Query 003463
Match_columns 818
No_of_seqs 685 out of 3490
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 02:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.6E-32 8.9E-37 290.8 21.1 237 74-320 22-272 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-31 4.2E-36 286.7 21.2 230 74-312 41-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2E-29 7E-34 258.6 16.0 166 149-316 12-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 3E-28 1E-32 236.7 18.0 157 153-311 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 7.4E-28 2.5E-32 235.0 18.7 155 151-309 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 9.1E-28 3.1E-32 233.5 19.1 155 151-309 1-167 (167)
7 2adc_A Polypyrimidine tract-bi 100.0 3.2E-27 1.1E-31 244.9 20.9 164 149-312 31-228 (229)
8 2qfj_A FBP-interacting repress 100.0 1.4E-27 4.9E-32 242.8 17.7 163 151-313 27-206 (216)
9 1fje_B Nucleolin RBD12, protei 99.9 5.9E-28 2E-32 238.2 12.2 161 149-312 10-174 (175)
10 1l3k_A Heterogeneous nuclear r 99.9 3.2E-27 1.1E-31 236.6 17.7 166 148-315 9-186 (196)
11 3pgw_A U1-A; protein-RNA compl 99.9 6.4E-27 2.2E-31 248.9 20.3 162 149-310 6-281 (282)
12 3smz_A Protein raver-1, ribonu 99.9 6.2E-27 2.1E-31 249.3 19.6 178 150-339 20-210 (284)
13 1qm9_A Polypyrimidine tract-bi 99.9 3.7E-27 1.3E-31 237.6 16.4 162 151-312 2-197 (198)
14 2g4b_A Splicing factor U2AF 65 99.9 4.5E-27 1.5E-31 230.6 16.6 153 151-309 3-171 (172)
15 2cjk_A Nuclear polyadenylated 99.9 2E-27 7E-32 232.0 13.8 155 151-312 2-166 (167)
16 3tyt_A Heterogeneous nuclear r 99.9 1.1E-26 3.6E-31 238.0 18.1 159 151-309 3-204 (205)
17 3nmr_A Cugbp ELAV-like family 99.9 1.1E-26 3.9E-31 227.8 17.3 157 151-310 2-175 (175)
18 2yh0_A Splicing factor U2AF 65 99.9 9.8E-27 3.4E-31 233.4 17.1 162 151-314 3-196 (198)
19 2ghp_A U4/U6 snRNA-associated 99.9 3.2E-26 1.1E-30 244.8 17.8 181 147-339 36-236 (292)
20 3sde_A Paraspeckle component 1 99.9 8.8E-25 3E-29 231.1 17.2 157 149-316 19-183 (261)
21 4f02_A Polyadenylate-binding p 99.8 6E-20 2E-24 188.1 12.6 155 74-228 15-182 (213)
22 2qfj_A FBP-interacting repress 99.8 3.6E-19 1.2E-23 180.7 14.9 157 74-230 28-208 (216)
23 1b7f_A Protein (SXL-lethal pro 99.8 4.5E-19 1.5E-23 172.6 13.7 150 75-224 4-168 (168)
24 1l3k_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 176.6 13.5 156 74-230 13-186 (196)
25 1fxl_A Paraneoplastic encephal 99.8 8.9E-19 3E-23 169.9 14.2 150 75-224 3-167 (167)
26 2i2y_A Fusion protein consists 99.8 5.8E-19 2E-23 171.0 12.2 127 186-313 10-149 (150)
27 3md3_A Nuclear and cytoplasmic 99.8 8.7E-19 3E-23 169.8 13.4 149 76-225 2-165 (166)
28 2cjk_A Nuclear polyadenylated 99.8 1.6E-19 5.4E-24 175.9 7.9 153 74-227 3-166 (167)
29 3nmr_A Cugbp ELAV-like family 99.8 1.1E-18 3.7E-23 170.9 13.7 152 74-225 3-175 (175)
30 2kn4_A Immunoglobulin G-bindin 99.8 3E-18 1E-22 167.1 15.2 130 185-314 9-152 (158)
31 1fje_B Nucleolin RBD12, protei 99.8 1.7E-19 5.7E-24 177.6 6.1 154 74-227 13-174 (175)
32 2g4b_A Splicing factor U2AF 65 99.7 5.2E-18 1.8E-22 166.0 10.9 148 74-224 4-171 (172)
33 2yh0_A Splicing factor U2AF 65 99.7 6.9E-18 2.4E-22 168.9 11.9 156 74-229 4-196 (198)
34 4f25_A Polyadenylate-binding p 99.7 7.1E-18 2.4E-22 156.5 9.7 103 151-253 4-113 (115)
35 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-17 8.9E-22 174.7 13.9 152 74-225 9-281 (282)
36 2adc_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 169.3 14.3 149 74-227 34-228 (229)
37 1qm9_A Polypyrimidine tract-bi 99.7 3.2E-17 1.1E-21 164.8 11.7 150 75-227 4-197 (198)
38 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7.4E-21 161.5 10.3 147 75-224 5-204 (205)
39 3sde_A Paraspeckle component 1 99.6 7.6E-16 2.6E-20 162.5 12.0 146 74-228 22-180 (261)
40 4fxv_A ELAV-like protein 1; RN 99.6 7.8E-16 2.7E-20 139.2 9.3 75 237-311 19-98 (99)
41 2lea_A Serine/arginine-rich sp 99.6 6.4E-16 2.2E-20 147.7 8.7 121 190-315 5-130 (135)
42 3lqv_A PRE-mRNA branch site pr 99.6 5.9E-16 2E-20 142.8 7.0 103 149-263 5-109 (115)
43 4fxv_A ELAV-like protein 1; RN 99.6 1.5E-15 5.1E-20 137.4 8.9 76 151-226 18-98 (99)
44 4f25_A Polyadenylate-binding p 99.6 2.3E-15 7.9E-20 139.5 9.4 80 237-316 5-87 (115)
45 3s8s_A Histone-lysine N-methyl 99.6 3.8E-15 1.3E-19 137.4 9.3 83 236-318 5-92 (110)
46 3lqv_A PRE-mRNA branch site pr 99.6 9.6E-15 3.3E-19 134.7 11.8 102 236-341 7-110 (115)
47 2hvz_A Splicing factor, argini 99.6 4.3E-15 1.5E-19 133.9 8.1 94 153-246 1-100 (101)
48 1whw_A Hypothetical protein ri 99.6 1.9E-14 6.4E-19 129.0 11.5 81 235-315 6-91 (99)
49 2lxi_A RNA-binding protein 10; 99.6 3.7E-15 1.3E-19 132.5 6.7 77 238-314 2-85 (91)
50 2kn4_A Immunoglobulin G-bindin 99.5 1.6E-14 5.4E-19 140.6 11.4 126 103-230 5-153 (158)
51 1x5u_A Splicing factor 3B subu 99.5 2.6E-14 9E-19 129.4 12.0 82 234-315 12-98 (105)
52 1sjq_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 131.9 10.6 82 149-231 13-96 (105)
53 3r27_A HnRNP L, heterogeneous 99.5 1.3E-14 4.4E-19 131.7 9.5 80 148-228 17-98 (100)
54 1whw_A Hypothetical protein ri 99.5 2.4E-14 8.3E-19 128.3 11.2 82 149-230 5-91 (99)
55 2lxi_A RNA-binding protein 10; 99.5 3.4E-15 1.2E-19 132.7 5.5 79 152-230 1-86 (91)
56 3s8s_A Histone-lysine N-methyl 99.5 1.7E-14 5.7E-19 133.1 10.1 79 149-227 3-86 (110)
57 2do4_A Squamous cell carcinoma 99.5 3E-14 1E-18 128.0 11.6 81 234-314 14-98 (100)
58 2cph_A RNA binding motif prote 99.5 3.7E-14 1.3E-18 128.8 12.3 83 233-315 11-100 (107)
59 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1E-14 3.5E-19 143.6 9.3 122 194-315 11-155 (165)
60 1x4a_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 129.7 12.2 81 234-314 19-101 (109)
61 1sjq_A Polypyrimidine tract-bi 99.5 1.2E-14 4.2E-19 133.0 8.6 79 236-315 15-95 (105)
62 3r27_A HnRNP L, heterogeneous 99.5 2.1E-14 7.1E-19 130.3 10.0 77 236-313 20-98 (100)
63 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.9E-14 6.6E-19 125.6 9.2 77 236-312 5-86 (87)
64 2d9p_A Polyadenylate-binding p 99.5 3.1E-14 1.1E-18 128.6 10.8 84 233-316 11-97 (103)
65 2dgs_A DAZ-associated protein 99.5 5.2E-14 1.8E-18 126.2 12.1 82 148-230 6-92 (99)
66 2wbr_A GW182, gawky, LD47780P; 99.5 1.7E-14 5.7E-19 127.3 8.5 73 237-310 7-79 (89)
67 1x5u_A Splicing factor 3B subu 99.5 4.7E-14 1.6E-18 127.8 11.9 84 147-230 10-98 (105)
68 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.5E-14 1.9E-18 127.0 12.0 83 234-316 12-97 (103)
69 2jvr_A Nucleolar protein 3; RN 99.5 2.1E-14 7.3E-19 132.8 9.5 90 217-313 15-106 (111)
70 2ad9_A Polypyrimidine tract-bi 99.5 2.9E-14 1E-18 133.4 10.2 91 141-232 20-112 (119)
71 2lkz_A RNA-binding protein 5; 99.5 1E-14 3.4E-19 131.2 6.8 76 236-311 8-94 (95)
72 3md1_A Nuclear and cytoplasmic 99.5 3E-14 1E-18 123.2 9.6 76 238-313 2-82 (83)
73 2cq0_A Eukaryotic translation 99.5 3.6E-14 1.2E-18 128.2 10.5 82 234-315 12-98 (103)
74 2dnm_A SRP46 splicing factor; 99.5 3.6E-14 1.2E-18 128.2 10.4 84 146-229 7-95 (103)
75 2dgv_A HnRNP M, heterogeneous 99.5 4.9E-14 1.7E-18 124.4 11.0 81 149-229 5-88 (92)
76 1why_A Hypothetical protein ri 99.5 6.4E-14 2.2E-18 125.3 11.8 78 236-314 16-95 (97)
77 2cqc_A Arginine/serine-rich sp 99.5 4.3E-14 1.5E-18 125.4 10.7 78 234-311 12-94 (95)
78 2cpz_A CUG triplet repeat RNA- 99.5 3.1E-14 1.1E-18 131.4 9.9 81 235-315 23-108 (115)
79 2dgs_A DAZ-associated protein 99.5 5.8E-14 2E-18 126.0 11.4 80 235-315 8-92 (99)
80 1wex_A Hypothetical protein (r 99.5 5.7E-14 2E-18 128.4 11.6 82 147-229 10-93 (104)
81 2cq1_A PTB-like protein L; RRM 99.5 6.2E-14 2.1E-18 127.5 11.7 80 235-315 13-94 (101)
82 2x1f_A MRNA 3'-END-processing 99.5 3.2E-14 1.1E-18 127.0 9.6 78 151-228 1-83 (96)
83 2cph_A RNA binding motif prote 99.5 5.9E-14 2E-18 127.4 11.5 83 148-230 11-100 (107)
84 2dgo_A Cytotoxic granule-assoc 99.5 5.4E-14 1.9E-18 129.6 11.4 82 234-315 12-98 (115)
85 2dnq_A RNA-binding protein 4B; 99.5 4.9E-14 1.7E-18 124.3 10.6 77 235-314 6-82 (90)
86 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.8E-14 1.3E-18 123.1 9.8 75 236-310 6-85 (85)
87 2dnz_A Probable RNA-binding pr 99.5 5.7E-14 2E-18 124.7 11.1 81 150-230 3-88 (95)
88 2dnz_A Probable RNA-binding pr 99.5 5.6E-14 1.9E-18 124.8 11.0 79 236-314 4-87 (95)
89 1x4a_A Splicing factor, argini 99.5 7.7E-14 2.6E-18 127.5 12.2 84 147-230 17-102 (109)
90 2do4_A Squamous cell carcinoma 99.5 6.5E-14 2.2E-18 125.8 11.5 82 148-229 13-98 (100)
91 2cq0_A Eukaryotic translation 99.5 4.5E-14 1.5E-18 127.6 10.4 83 148-230 11-98 (103)
92 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.9E-14 1E-18 124.4 8.9 78 150-227 4-86 (87)
93 2e5h_A Zinc finger CCHC-type a 99.5 8.6E-14 2.9E-18 123.3 11.8 76 235-310 14-94 (94)
94 2cpf_A RNA binding motif prote 99.5 4.9E-14 1.7E-18 126.0 10.3 81 150-230 3-91 (98)
95 2dgo_A Cytotoxic granule-assoc 99.5 8E-14 2.7E-18 128.5 12.0 84 147-230 10-98 (115)
96 2dnm_A SRP46 splicing factor; 99.5 4.7E-14 1.6E-18 127.4 10.3 80 235-314 11-95 (103)
97 3md1_A Nuclear and cytoplasmic 99.5 3.6E-14 1.2E-18 122.7 9.1 77 152-228 1-82 (83)
98 2d9p_A Polyadenylate-binding p 99.5 6.3E-14 2.1E-18 126.6 11.0 84 148-231 11-97 (103)
99 2dgx_A KIAA0430 protein; RRM d 99.5 6.1E-14 2.1E-18 125.5 10.8 79 236-314 8-92 (96)
100 2dnh_A Bruno-like 5, RNA bindi 99.5 6.7E-14 2.3E-18 126.7 11.2 82 235-316 13-101 (105)
101 1x4h_A RNA-binding protein 28; 99.5 9.5E-14 3.2E-18 126.9 12.3 81 235-315 13-104 (111)
102 4a8x_A RNA-binding protein wit 99.5 4.1E-14 1.4E-18 123.6 9.4 79 236-314 3-87 (88)
103 2x1f_A MRNA 3'-END-processing 99.5 5.8E-14 2E-18 125.3 10.5 79 237-315 2-85 (96)
104 1wf1_A RNA-binding protein RAL 99.5 3.7E-14 1.3E-18 129.9 9.4 95 215-313 6-101 (110)
105 2fy1_A RNA-binding motif prote 99.5 9.1E-14 3.1E-18 129.1 12.2 79 236-314 6-88 (116)
106 1x5s_A Cold-inducible RNA-bind 99.5 4E-14 1.4E-18 127.6 9.4 81 235-315 10-95 (102)
107 2cq1_A PTB-like protein L; RRM 99.5 7.7E-14 2.6E-18 126.9 11.3 83 147-230 10-94 (101)
108 1wex_A Hypothetical protein (r 99.5 5.8E-14 2E-18 128.3 10.5 79 236-315 14-94 (104)
109 2cq3_A RNA-binding protein 9; 99.5 1.2E-13 4E-18 124.8 12.4 82 234-315 12-96 (103)
110 1p27_B RNA-binding protein 8A; 99.5 4.3E-14 1.5E-18 128.3 9.4 79 235-313 21-104 (106)
111 3pgw_S U1-70K; protein-RNA com 99.5 1.4E-14 4.9E-19 164.2 7.7 145 169-313 9-183 (437)
112 1oo0_B CG8781-PA, drosophila Y 99.5 5.8E-14 2E-18 128.4 10.2 81 235-315 24-109 (110)
113 2cpf_A RNA binding motif prote 99.5 4.2E-14 1.4E-18 126.5 9.0 79 236-314 4-90 (98)
114 2dnh_A Bruno-like 5, RNA bindi 99.5 1E-13 3.4E-18 125.6 11.7 82 149-230 12-100 (105)
115 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.9E-14 1.7E-18 122.4 9.2 77 149-225 4-85 (85)
116 2cpz_A CUG triplet repeat RNA- 99.5 5.5E-14 1.9E-18 129.7 9.9 84 147-230 20-108 (115)
117 2cqi_A Nucleolysin TIAR; RNA r 99.5 9.1E-14 3.1E-18 125.6 11.2 83 148-230 11-96 (103)
118 2e5j_A Methenyltetrahydrofolat 99.5 5.7E-14 2E-18 125.7 9.8 79 235-313 17-95 (97)
119 2dnq_A RNA-binding protein 4B; 99.5 9.3E-14 3.2E-18 122.5 11.0 79 149-230 5-83 (90)
120 2ad9_A Polypyrimidine tract-bi 99.5 4.2E-14 1.5E-18 132.3 9.2 80 236-316 30-111 (119)
121 2cq3_A RNA-binding protein 9; 99.5 1.4E-13 4.6E-18 124.4 12.2 84 147-230 10-96 (103)
122 2cqb_A Peptidyl-prolyl CIS-tra 99.5 5.7E-14 1.9E-18 126.6 9.6 81 235-315 10-95 (102)
123 1x4d_A Matrin 3; structural ge 99.5 4.5E-14 1.6E-18 128.6 9.0 79 149-228 12-93 (102)
124 1x4h_A RNA-binding protein 28; 99.5 1E-13 3.6E-18 126.6 11.5 83 148-230 11-104 (111)
125 2dgt_A RNA-binding protein 30; 99.5 9E-14 3.1E-18 123.1 10.8 78 234-314 7-84 (92)
126 1p27_B RNA-binding protein 8A; 99.5 5.1E-14 1.7E-18 127.8 9.4 81 148-228 19-104 (106)
127 2dnp_A RNA-binding protein 14; 99.5 9.6E-14 3.3E-18 122.4 10.8 78 234-314 6-83 (90)
128 3p5t_L Cleavage and polyadenyl 99.5 1.6E-14 5.3E-19 127.7 5.7 76 238-313 2-84 (90)
129 1fjc_A Nucleolin RBD2, protein 99.5 3.4E-14 1.2E-18 126.6 7.9 82 234-315 13-94 (96)
130 1x4d_A Matrin 3; structural ge 99.5 5.2E-14 1.8E-18 128.3 9.2 77 236-313 14-93 (102)
131 2dgp_A Bruno-like 4, RNA bindi 99.5 9.2E-14 3.1E-18 126.1 10.7 82 234-315 10-99 (106)
132 2dgv_A HnRNP M, heterogeneous 99.5 5.9E-14 2E-18 123.9 9.2 79 236-314 7-88 (92)
133 2jvo_A Nucleolar protein 3; nu 99.5 5.1E-14 1.7E-18 129.2 9.0 80 233-315 27-106 (108)
134 1x5t_A Splicing factor 3B subu 99.5 4.6E-14 1.6E-18 125.6 8.5 80 236-315 4-89 (96)
135 2dhg_A TRNA selenocysteine ass 99.5 1.2E-13 4.1E-18 124.9 11.3 82 149-230 6-93 (104)
136 1why_A Hypothetical protein ri 99.5 9.3E-14 3.2E-18 124.2 10.4 79 149-228 14-94 (97)
137 2jrs_A RNA-binding protein 39; 99.5 7.5E-14 2.6E-18 128.0 9.9 81 148-228 22-107 (108)
138 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-13 4.2E-18 125.0 11.2 79 235-315 13-97 (104)
139 1u6f_A Tcubp1, RNA-binding pro 99.5 1.1E-13 3.8E-18 131.8 11.4 83 233-315 38-125 (139)
140 1x5s_A Cold-inducible RNA-bind 99.5 6.6E-14 2.2E-18 126.1 9.3 82 149-230 9-95 (102)
141 1x5t_A Splicing factor 3B subu 99.5 4.8E-14 1.6E-18 125.5 8.2 81 150-230 3-89 (96)
142 1wi8_A EIF-4B, eukaryotic tran 99.5 1.1E-13 3.7E-18 125.4 10.6 83 146-230 9-97 (104)
143 2dgt_A RNA-binding protein 30; 99.5 9E-14 3.1E-18 123.1 9.8 81 147-230 5-85 (92)
144 2jrs_A RNA-binding protein 39; 99.5 8.9E-14 3E-18 127.5 10.1 80 234-313 23-107 (108)
145 2ywk_A Putative RNA-binding pr 99.5 7.3E-14 2.5E-18 124.1 9.2 77 235-311 14-94 (95)
146 2cqb_A Peptidyl-prolyl CIS-tra 99.5 5.5E-14 1.9E-18 126.6 8.5 82 149-230 9-95 (102)
147 1x4g_A Nucleolysin TIAR; struc 99.5 9.7E-14 3.3E-18 126.9 10.2 79 236-315 24-102 (109)
148 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.9E-18 131.0 11.0 79 235-313 44-127 (129)
149 2dgp_A Bruno-like 4, RNA bindi 99.5 9.1E-14 3.1E-18 126.1 9.9 83 147-229 8-98 (106)
150 2xnq_A Nuclear polyadenylated 99.5 1.3E-13 4.3E-18 124.0 10.7 76 235-313 20-96 (97)
151 2la4_A Nuclear and cytoplasmic 99.5 5.2E-14 1.8E-18 126.7 8.2 76 236-312 26-101 (101)
152 2dgu_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 125.1 10.6 78 236-316 10-87 (103)
153 2cpd_A Apobec-1 stimulating pr 99.5 2E-13 7E-18 122.5 11.9 77 235-314 13-91 (99)
154 2e5h_A Zinc finger CCHC-type a 99.5 1E-13 3.4E-18 122.9 9.8 77 149-225 13-94 (94)
155 2cqc_A Arginine/serine-rich sp 99.5 7.9E-14 2.7E-18 123.7 9.1 79 148-226 11-94 (95)
156 2cpj_A Non-POU domain-containi 99.5 1E-13 3.6E-18 124.4 9.9 78 235-313 13-90 (99)
157 2ywk_A Putative RNA-binding pr 99.5 8E-14 2.7E-18 123.8 9.1 80 146-225 10-93 (95)
158 2i2y_A Fusion protein consists 99.5 1.2E-13 4E-18 133.6 11.0 81 148-228 69-149 (150)
159 2err_A Ataxin-2-binding protei 99.5 7.7E-14 2.6E-18 128.0 9.1 81 232-312 24-107 (109)
160 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.9E-18 120.2 9.6 76 234-310 9-85 (85)
161 2lkz_A RNA-binding protein 5; 99.5 3.6E-14 1.2E-18 127.6 6.5 78 149-226 6-94 (95)
162 3zzy_A Polypyrimidine tract-bi 99.5 7.4E-14 2.5E-18 132.5 9.0 77 238-314 29-108 (130)
163 2cpi_A CCR4-NOT transcription 99.5 1E-13 3.6E-18 127.4 9.8 80 234-313 12-102 (111)
164 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4.1E-18 130.8 10.4 80 236-315 28-113 (127)
165 1fjc_A Nucleolin RBD2, protein 99.5 5.2E-14 1.8E-18 125.4 7.4 82 148-229 12-93 (96)
166 1x4c_A Splicing factor, argini 99.5 1.6E-13 5.3E-18 125.5 10.7 77 236-314 14-95 (108)
167 2dhg_A TRNA selenocysteine ass 99.5 9.3E-14 3.2E-18 125.6 9.1 81 236-316 8-94 (104)
168 2khc_A Testis-specific RNP-typ 99.5 1.1E-13 3.9E-18 128.1 9.8 77 234-310 37-118 (118)
169 3ex7_B RNA-binding protein 8A; 99.5 1.2E-13 4E-18 129.4 9.9 81 235-315 20-105 (126)
170 2kxn_B Transformer-2 protein h 99.5 1.2E-13 4E-18 130.9 10.0 82 147-228 41-127 (129)
171 2div_A TRNA selenocysteine ass 99.5 1E-13 3.5E-18 124.2 9.0 80 149-228 6-95 (99)
172 2la6_A RNA-binding protein FUS 99.5 1.4E-13 4.8E-18 123.5 9.8 76 235-310 11-99 (99)
173 2cpj_A Non-POU domain-containi 99.5 1.2E-13 4.1E-18 124.0 9.4 80 149-229 12-91 (99)
174 4a8x_A RNA-binding protein wit 99.5 1E-13 3.5E-18 121.0 8.7 78 151-228 3-86 (88)
175 2ytc_A PRE-mRNA-splicing facto 99.5 1.4E-13 4.9E-18 119.6 9.6 77 148-225 8-85 (85)
176 2la4_A Nuclear and cytoplasmic 99.5 8.3E-14 2.8E-18 125.4 8.3 76 151-227 26-101 (101)
177 2fc9_A NCL protein; structure 99.5 1.1E-13 3.6E-18 124.7 8.9 81 234-314 12-93 (101)
178 2hvz_A Splicing factor, argini 99.5 6.3E-14 2.1E-18 126.2 7.3 77 238-314 1-77 (101)
179 2cq4_A RNA binding motif prote 99.5 4.2E-14 1.4E-18 130.3 6.3 79 235-314 23-106 (114)
180 1oo0_B CG8781-PA, drosophila Y 99.5 1.1E-13 3.8E-18 126.5 9.1 81 148-228 22-107 (110)
181 2fy1_A RNA-binding motif prote 99.5 1.6E-13 5.6E-18 127.4 10.3 81 149-229 4-88 (116)
182 2cpe_A RNA-binding protein EWS 99.5 1.4E-13 4.7E-18 126.5 9.6 82 234-315 12-106 (113)
183 1whx_A Hypothetical protein ri 99.5 1.2E-13 4.1E-18 127.2 9.2 76 236-312 9-84 (111)
184 2fc9_A NCL protein; structure 99.5 1.1E-13 3.9E-18 124.5 8.7 83 148-230 11-94 (101)
185 3p5t_L Cleavage and polyadenyl 99.5 3.8E-14 1.3E-18 125.3 5.4 77 153-229 2-85 (90)
186 2cqd_A RNA-binding region cont 99.5 2.6E-13 8.9E-18 125.3 11.3 80 233-313 13-97 (116)
187 2dh8_A DAZ-associated protein 99.5 1.5E-13 5.3E-18 124.5 9.6 83 147-230 11-98 (105)
188 2dgu_A Heterogeneous nuclear r 99.5 2.1E-13 7.1E-18 123.4 10.4 79 149-230 8-86 (103)
189 2a3j_A U1 small nuclear ribonu 99.5 1.5E-13 5.2E-18 130.0 9.9 80 149-228 26-111 (127)
190 3ucg_A Polyadenylate-binding p 99.5 1.5E-13 5.2E-18 120.3 9.2 76 236-312 5-85 (89)
191 2cqd_A RNA-binding region cont 99.5 2.7E-13 9.3E-18 125.2 11.3 83 147-230 12-99 (116)
192 2wbr_A GW182, gawky, LD47780P; 99.5 8.5E-14 2.9E-18 122.8 7.4 73 151-224 6-78 (89)
193 2khc_A Testis-specific RNP-typ 99.5 1.5E-13 5.1E-18 127.3 9.5 79 147-225 35-118 (118)
194 2dng_A Eukaryotic translation 99.5 2.4E-13 8.2E-18 122.9 10.6 79 235-315 13-96 (103)
195 3ex7_B RNA-binding protein 8A; 99.5 1.7E-13 5.8E-18 128.3 9.9 82 148-229 18-104 (126)
196 2cpx_A Hypothetical protein FL 99.5 1.6E-13 5.6E-18 126.2 9.7 81 235-315 23-108 (115)
197 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 4.3E-18 123.5 8.6 80 149-228 16-95 (97)
198 2cqh_A IGF-II mRNA-binding pro 99.5 8.1E-14 2.8E-18 123.5 7.3 78 236-315 7-86 (93)
199 2do0_A HnRNP M, heterogeneous 99.5 3.6E-13 1.2E-17 123.8 11.8 80 149-228 12-95 (114)
200 1p1t_A Cleavage stimulation fa 99.5 9E-14 3.1E-18 125.6 7.6 81 236-316 7-92 (104)
201 3ns6_A Eukaryotic translation 99.4 4.5E-14 1.5E-18 127.5 5.6 76 237-312 6-93 (100)
202 2dng_A Eukaryotic translation 99.4 2.4E-13 8.2E-18 122.9 10.4 82 147-230 10-96 (103)
203 1h2v_Z 20 kDa nuclear CAP bind 99.4 2E-13 6.8E-18 132.8 10.6 81 236-316 38-123 (156)
204 2do0_A HnRNP M, heterogeneous 99.4 2.8E-13 9.5E-18 124.5 10.9 80 235-314 13-96 (114)
205 1x4e_A RNA binding motif, sing 99.4 1.2E-13 4.1E-18 120.2 8.0 76 150-225 3-83 (85)
206 2kvi_A Nuclear polyadenylated 99.4 1.2E-13 4.3E-18 123.4 8.3 77 235-314 8-85 (96)
207 2fc8_A NCL protein; structure 99.4 2.1E-13 7.2E-18 122.8 9.8 83 233-315 11-95 (102)
208 1x4g_A Nucleolysin TIAR; struc 99.4 2.4E-13 8.4E-18 124.2 10.3 80 150-230 23-102 (109)
209 2div_A TRNA selenocysteine ass 99.4 1.2E-13 4.3E-18 123.6 8.2 78 236-313 8-95 (99)
210 2cqp_A RNA-binding protein 12; 99.4 1.3E-13 4.3E-18 123.4 8.2 79 235-313 13-96 (98)
211 1x4c_A Splicing factor, argini 99.4 3.3E-13 1.1E-17 123.4 11.1 79 149-229 12-95 (108)
212 2lea_A Serine/arginine-rich sp 99.4 7.5E-14 2.6E-18 133.3 7.1 85 146-230 41-130 (135)
213 1nu4_A U1A RNA binding domain; 99.4 1.3E-13 4.4E-18 122.9 8.1 79 236-314 7-91 (97)
214 2dnp_A RNA-binding protein 14; 99.4 2.5E-13 8.6E-18 119.7 9.9 78 149-229 6-83 (90)
215 2la6_A RNA-binding protein FUS 99.4 2E-13 6.7E-18 122.6 9.4 78 148-225 9-99 (99)
216 2kvi_A Nuclear polyadenylated 99.4 1.5E-13 5E-18 122.9 8.4 79 149-230 7-86 (96)
217 2dis_A Unnamed protein product 99.4 2.5E-13 8.6E-18 123.8 10.2 82 150-231 6-96 (109)
218 2m2b_A RNA-binding protein 10; 99.4 1.4E-13 4.8E-18 130.3 8.8 84 146-230 17-111 (131)
219 1u6f_A Tcubp1, RNA-binding pro 99.4 2.7E-13 9.1E-18 129.2 10.7 83 148-230 38-125 (139)
220 2err_A Ataxin-2-binding protei 99.4 1.3E-13 4.3E-18 126.6 8.1 80 148-227 25-107 (109)
221 3ns6_A Eukaryotic translation 99.4 5.9E-14 2E-18 126.7 5.8 78 150-227 4-93 (100)
222 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.9E-18 128.1 7.8 77 236-313 24-103 (112)
223 2dgx_A KIAA0430 protein; RRM d 99.4 2.1E-13 7E-18 122.1 9.2 80 151-230 8-93 (96)
224 1nu4_A U1A RNA binding domain; 99.4 1.1E-13 3.9E-18 123.3 7.5 80 149-228 5-90 (97)
225 2cpe_A RNA-binding protein EWS 99.4 1.9E-13 6.3E-18 125.6 9.1 83 148-230 11-106 (113)
226 2jwn_A Embryonic polyadenylate 99.4 3.9E-14 1.3E-18 132.4 4.5 77 236-313 35-116 (124)
227 1p1t_A Cleavage stimulation fa 99.4 6.4E-14 2.2E-18 126.5 5.8 79 150-228 6-89 (104)
228 2nlw_A Eukaryotic translation 99.4 2.4E-13 8.3E-18 123.7 9.7 77 236-312 14-100 (105)
229 2xnq_A Nuclear polyadenylated 99.4 3E-13 1E-17 121.5 10.1 77 148-227 18-95 (97)
230 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.2E-13 4E-18 124.6 7.4 77 235-313 17-99 (100)
231 1x5p_A Negative elongation fac 99.4 4.9E-13 1.7E-17 119.6 11.3 76 236-314 14-89 (97)
232 2cpd_A Apobec-1 stimulating pr 99.4 5.4E-13 1.8E-17 119.7 11.6 78 149-229 12-91 (99)
233 1x4f_A Matrin 3; structural ge 99.4 9.4E-14 3.2E-18 128.6 6.8 80 149-229 22-104 (112)
234 3ulh_A THO complex subunit 4; 99.4 2.6E-13 9E-18 123.2 9.7 76 235-310 27-106 (107)
235 2cpx_A Hypothetical protein FL 99.4 1.8E-13 6.1E-18 126.0 8.7 82 149-230 22-108 (115)
236 3ulh_A THO complex subunit 4; 99.4 2.7E-13 9.1E-18 123.2 9.7 78 148-225 25-106 (107)
237 1sjr_A Polypyrimidine tract-bi 99.4 2E-13 6.9E-18 134.3 9.5 77 237-313 46-125 (164)
238 2jvo_A Nucleolar protein 3; nu 99.4 1.7E-13 5.7E-18 125.8 8.4 79 147-228 26-104 (108)
239 2kt5_A RNA and export factor-b 99.4 6.4E-13 2.2E-17 124.3 12.3 79 235-313 33-115 (124)
240 2nlw_A Eukaryotic translation 99.4 3.4E-13 1.2E-17 122.7 10.1 80 148-227 11-100 (105)
241 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.6E-13 5.4E-18 123.7 7.8 78 149-228 16-99 (100)
242 2mss_A Protein (musashi1); RNA 99.4 1.5E-13 5.3E-18 116.7 7.3 70 239-309 1-75 (75)
243 2krb_A Eukaryotic translation 99.4 2.4E-13 8.2E-18 117.6 8.5 71 152-222 1-81 (81)
244 2rs2_A Musashi-1, RNA-binding 99.4 3.4E-13 1.2E-17 123.7 10.0 81 234-315 22-107 (109)
245 2dis_A Unnamed protein product 99.4 3.2E-13 1.1E-17 123.1 9.8 79 236-314 7-94 (109)
246 2dh8_A DAZ-associated protein 99.4 2.1E-13 7E-18 123.7 8.4 81 234-315 13-98 (105)
247 2fc8_A NCL protein; structure 99.4 2.4E-13 8.3E-18 122.4 8.8 83 148-230 11-95 (102)
248 1s79_A Lupus LA protein; RRM, 99.4 2.7E-13 9.3E-18 123.5 9.2 77 234-311 8-88 (103)
249 2cqh_A IGF-II mRNA-binding pro 99.4 1.3E-13 4.4E-18 122.2 6.7 79 150-230 6-86 (93)
250 2e44_A Insulin-like growth fac 99.4 5.7E-13 2E-17 118.6 10.9 78 236-313 14-93 (96)
251 3ucg_A Polyadenylate-binding p 99.4 2.8E-13 9.5E-18 118.7 8.6 76 151-227 5-85 (89)
252 1whx_A Hypothetical protein ri 99.4 1.5E-13 5.2E-18 126.6 7.3 77 150-227 8-84 (111)
253 1x4b_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 126.1 7.9 80 235-315 25-109 (116)
254 2jvr_A Nucleolar protein 3; RN 99.4 1.6E-13 5.4E-18 126.9 7.2 78 150-227 26-105 (111)
255 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.8E-13 1.6E-17 130.2 10.9 81 149-229 36-121 (156)
256 1wf1_A RNA-binding protein RAL 99.4 3.5E-13 1.2E-17 123.4 9.4 77 149-228 24-101 (110)
257 3n9u_C Cleavage and polyadenyl 99.4 1.7E-13 6E-18 134.1 7.8 78 236-313 54-138 (156)
258 2e5i_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 126.6 9.9 74 239-313 27-103 (124)
259 2m2b_A RNA-binding protein 10; 99.4 1.5E-13 5.2E-18 130.1 7.0 79 234-313 20-109 (131)
260 2ek1_A RNA-binding protein 12; 99.4 1.2E-13 4.2E-18 122.6 6.0 76 236-311 14-94 (95)
261 1x5o_A RNA binding motif, sing 99.4 5.7E-13 1.9E-17 122.5 10.4 78 235-312 23-112 (114)
262 3s7r_A Heterogeneous nuclear r 99.4 3.5E-13 1.2E-17 117.8 8.4 76 148-224 7-87 (87)
263 3s7r_A Heterogeneous nuclear r 99.4 4.5E-13 1.5E-17 117.1 9.1 75 234-309 8-87 (87)
264 1x5p_A Negative elongation fac 99.4 1E-12 3.5E-17 117.5 11.5 80 148-230 11-90 (97)
265 1x4e_A RNA binding motif, sing 99.4 1.1E-13 3.9E-18 120.4 5.1 76 236-311 4-84 (85)
266 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.4E-18 119.5 7.2 76 236-313 4-79 (88)
267 2ki2_A SS-DNA binding protein 99.4 1.1E-13 3.7E-18 121.8 4.9 75 238-313 2-81 (90)
268 2krb_A Eukaryotic translation 99.4 2E-13 6.7E-18 118.1 6.4 69 238-306 2-80 (81)
269 1x5o_A RNA binding motif, sing 99.4 6.9E-13 2.4E-17 122.0 10.4 79 149-227 22-112 (114)
270 3n9u_C Cleavage and polyadenyl 99.4 2.7E-13 9.2E-18 132.8 7.9 77 151-227 54-137 (156)
271 1fj7_A Nucleolin RBD1, protein 99.4 1.9E-13 6.6E-18 122.9 6.4 79 236-315 16-98 (101)
272 2cqp_A RNA-binding protein 12; 99.4 2.1E-13 7.1E-18 121.9 6.5 79 149-227 12-95 (98)
273 2dgw_A Probable RNA-binding pr 99.4 5.5E-13 1.9E-17 117.6 9.2 77 235-313 8-88 (91)
274 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 9E-13 3.1E-17 125.1 11.2 76 234-309 60-140 (140)
275 2ek1_A RNA-binding protein 12; 99.4 1.4E-13 4.7E-18 122.3 5.0 76 150-225 13-93 (95)
276 2cqg_A TDP-43, TAR DNA-binding 99.4 1E-12 3.5E-17 118.6 10.8 81 148-230 11-96 (103)
277 1wg5_A Heterogeneous nuclear r 99.4 7.8E-13 2.7E-17 120.1 9.9 79 149-228 12-95 (104)
278 1s79_A Lupus LA protein; RRM, 99.4 3.8E-13 1.3E-17 122.6 7.8 77 149-226 8-88 (103)
279 2rs2_A Musashi-1, RNA-binding 99.4 5.3E-13 1.8E-17 122.5 8.8 81 148-229 21-106 (109)
280 2dgw_A Probable RNA-binding pr 99.4 6E-13 2E-17 117.4 8.7 78 149-228 7-88 (91)
281 2cqg_A TDP-43, TAR DNA-binding 99.4 1.3E-12 4.5E-17 117.9 11.1 79 234-314 12-95 (103)
282 2cpi_A CCR4-NOT transcription 99.4 3.9E-13 1.3E-17 123.6 7.7 80 149-228 12-102 (111)
283 2kt5_A RNA and export factor-b 99.4 6.8E-13 2.3E-17 124.1 9.4 82 148-229 31-116 (124)
284 1wg5_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 118.8 10.8 78 235-313 13-95 (104)
285 3zzy_A Polypyrimidine tract-bi 99.4 8.1E-13 2.8E-17 125.4 9.7 78 153-230 29-109 (130)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7.3E-13 2.5E-17 125.8 9.4 77 148-224 59-140 (140)
287 2diu_A KIAA0430 protein; struc 99.4 9.9E-13 3.4E-17 117.2 9.6 72 238-314 10-86 (96)
288 2ki2_A SS-DNA binding protein 99.4 1.8E-13 6.2E-18 120.4 4.7 76 153-229 2-82 (90)
289 1wg1_A KIAA1579 protein, homol 99.4 3.3E-13 1.1E-17 118.7 6.2 76 150-227 3-78 (88)
290 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.5E-13 1.2E-17 114.8 6.0 71 238-309 1-76 (77)
291 2e44_A Insulin-like growth fac 99.4 1.3E-12 4.4E-17 116.3 10.0 79 150-228 13-93 (96)
292 2mss_A Protein (musashi1); RNA 99.4 3.3E-13 1.1E-17 114.6 5.8 70 154-224 1-75 (75)
293 2cq2_A Hypothetical protein LO 99.4 8.5E-13 2.9E-17 122.5 8.8 78 148-226 21-105 (114)
294 2cq4_A RNA binding motif prote 99.4 3.2E-13 1.1E-17 124.3 5.9 77 150-227 23-104 (114)
295 2diu_A KIAA0430 protein; struc 99.4 1.3E-12 4.5E-17 116.4 9.5 76 150-230 6-87 (96)
296 2e5g_A U6 snRNA-specific termi 99.4 2.9E-12 9.9E-17 113.9 11.7 79 150-229 6-84 (94)
297 1fj7_A Nucleolin RBD1, protein 99.4 4E-13 1.4E-17 120.9 6.2 80 149-229 14-97 (101)
298 3d2w_A TAR DNA-binding protein 99.4 1.4E-12 4.7E-17 115.5 9.5 77 235-315 9-87 (89)
299 1sjr_A Polypyrimidine tract-bi 99.4 1.5E-12 5.1E-17 128.1 10.6 79 152-230 46-127 (164)
300 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.8E-17 116.0 9.4 77 236-313 7-83 (94)
301 3beg_B Splicing factor, argini 99.4 1.1E-12 3.7E-17 121.5 9.0 75 236-312 15-94 (115)
302 2cq2_A Hypothetical protein LO 99.4 1.2E-12 4E-17 121.6 8.9 76 236-312 24-106 (114)
303 2jwn_A Embryonic polyadenylate 99.4 1.3E-12 4.5E-17 121.9 9.4 77 151-228 35-116 (124)
304 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.2E-13 1.1E-17 115.0 4.7 71 153-224 1-76 (77)
305 1x4b_A Heterogeneous nuclear r 99.4 9.5E-13 3.3E-17 121.5 7.9 80 150-230 25-109 (116)
306 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.4E-12 4.8E-17 128.3 9.4 83 147-229 67-154 (165)
307 3egn_A RNA-binding protein 40; 99.4 1.4E-12 4.9E-17 124.9 9.3 80 236-315 44-133 (143)
308 2cpy_A RNA-binding protein 12; 99.4 5.7E-13 1.9E-17 123.1 6.1 78 235-313 13-95 (114)
309 3egn_A RNA-binding protein 40; 99.3 1.4E-12 4.8E-17 124.9 8.7 81 149-229 42-132 (143)
310 2hgl_A HNRPF protein, heteroge 99.3 5.8E-13 2E-17 127.6 5.8 77 236-313 43-126 (136)
311 3d2w_A TAR DNA-binding protein 99.3 1.9E-12 6.5E-17 114.5 8.5 76 149-228 8-85 (89)
312 1iqt_A AUF1, heterogeneous nuc 99.3 7.3E-13 2.5E-17 112.3 5.4 70 239-309 1-75 (75)
313 1wez_A HnRNP H', FTP-3, hetero 99.3 1.8E-12 6.3E-17 117.6 8.2 78 149-228 12-93 (102)
314 2hgn_A Heterogeneous nuclear r 99.3 6.8E-13 2.3E-17 127.5 5.6 120 190-314 2-125 (139)
315 2e5i_A Heterogeneous nuclear r 99.3 3.5E-12 1.2E-16 120.2 10.2 79 150-229 21-104 (124)
316 1wf0_A TDP-43, TAR DNA-binding 99.3 9.2E-13 3.1E-17 115.6 5.7 79 150-230 3-81 (88)
317 1wez_A HnRNP H', FTP-3, hetero 99.3 1.6E-12 5.5E-17 118.0 7.2 77 235-313 13-93 (102)
318 2db1_A Heterogeneous nuclear r 99.3 9.9E-13 3.4E-17 122.4 5.9 76 236-312 16-98 (118)
319 1wf0_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.4E-17 114.7 6.2 78 236-315 4-81 (88)
320 2cpy_A RNA-binding protein 12; 99.3 6.6E-13 2.2E-17 122.6 4.5 78 149-227 12-94 (114)
321 2lcw_A RNA-binding protein FUS 99.0 1.5E-13 5.3E-18 127.0 0.0 79 236-314 6-97 (116)
322 1wel_A RNA-binding protein 12; 99.3 6E-13 2E-17 124.7 4.0 77 236-313 24-105 (124)
323 3q2s_C Cleavage and polyadenyl 99.3 1.4E-12 4.7E-17 135.6 6.9 78 236-313 67-151 (229)
324 2dnn_A RNA-binding protein 12; 99.3 3.8E-12 1.3E-16 117.2 9.1 74 236-311 15-92 (109)
325 2xs2_A Deleted in azoospermia- 99.3 8.3E-13 2.8E-17 119.0 4.5 79 149-229 6-88 (102)
326 2lcw_A RNA-binding protein FUS 99.0 1.8E-13 6E-18 126.6 0.0 82 149-230 4-98 (116)
327 2lmi_A GRSF-1, G-rich sequence 99.3 1E-12 3.5E-17 119.9 5.1 78 235-313 9-93 (107)
328 3beg_B Splicing factor, argini 99.3 2.5E-12 8.6E-17 119.1 7.7 71 150-222 14-84 (115)
329 2bz2_A Negative elongation fac 99.3 3.5E-12 1.2E-16 119.4 8.8 77 236-315 38-114 (121)
330 1wel_A RNA-binding protein 12; 99.3 6.2E-13 2.1E-17 124.6 3.4 77 149-226 22-103 (124)
331 1iqt_A AUF1, heterogeneous nuc 99.3 1E-12 3.5E-17 111.4 4.4 70 154-224 1-75 (75)
332 3q2s_C Cleavage and polyadenyl 99.3 2.3E-12 8E-17 133.8 7.6 76 151-226 67-149 (229)
333 2hzc_A Splicing factor U2AF 65 99.3 5.9E-12 2E-16 109.7 9.0 71 236-308 5-86 (87)
334 2db1_A Heterogeneous nuclear r 99.3 1.1E-12 3.8E-17 122.1 4.3 76 150-226 15-97 (118)
335 2f3j_A RNA and export factor b 99.3 6.8E-12 2.3E-16 125.3 10.3 78 236-313 87-168 (177)
336 2hzc_A Splicing factor U2AF 65 99.3 4.3E-12 1.5E-16 110.5 7.8 72 150-223 4-86 (87)
337 2voo_A Lupus LA protein; RNA-b 99.3 6.9E-12 2.3E-16 126.9 10.2 114 198-312 63-187 (193)
338 2lmi_A GRSF-1, G-rich sequence 99.3 1.8E-12 6.1E-17 118.4 5.0 78 149-227 8-92 (107)
339 3u1l_A PRE-mRNA-splicing facto 99.3 7.4E-12 2.5E-16 130.7 10.1 80 234-314 131-231 (240)
340 2hgl_A HNRPF protein, heteroge 99.3 1.7E-12 5.7E-17 124.3 4.8 76 150-226 42-124 (136)
341 2f3j_A RNA and export factor b 99.3 5.9E-12 2E-16 125.7 8.7 79 149-227 85-167 (177)
342 2xs2_A Deleted in azoospermia- 99.3 2.3E-12 7.8E-17 116.1 4.9 77 235-313 7-87 (102)
343 2bz2_A Negative elongation fac 99.3 6.2E-12 2.1E-16 117.8 8.0 78 149-229 36-113 (121)
344 2hgn_A Heterogeneous nuclear r 99.2 3.4E-12 1.2E-16 122.7 5.3 78 149-228 43-124 (139)
345 2hgm_A HNRPF protein, heteroge 99.2 9E-12 3.1E-16 117.7 7.8 76 149-226 39-120 (126)
346 2dnn_A RNA-binding protein 12; 99.2 4.2E-12 1.4E-16 116.9 5.3 74 151-226 15-92 (109)
347 2dha_A FLJ20171 protein; RRM d 99.2 3.1E-12 1.1E-16 120.4 3.6 76 236-312 22-105 (123)
348 2dha_A FLJ20171 protein; RRM d 99.2 4.9E-12 1.7E-16 119.0 4.4 76 150-226 21-104 (123)
349 2dnl_A Cytoplasmic polyadenyla 99.2 1.9E-11 6.6E-16 112.7 8.0 72 150-224 6-85 (114)
350 2hgm_A HNRPF protein, heteroge 99.2 1.1E-11 3.7E-16 117.2 6.4 75 236-312 41-121 (126)
351 2dnl_A Cytoplasmic polyadenyla 99.2 3.3E-11 1.1E-15 111.1 9.5 78 236-316 7-92 (114)
352 3u1l_A PRE-mRNA-splicing facto 99.2 1.9E-11 6.4E-16 127.7 8.5 81 149-230 131-232 (240)
353 2dit_A HIV TAT specific factor 99.2 5.5E-11 1.9E-15 109.4 10.7 79 235-313 13-103 (112)
354 2pe8_A Splicing factor 45; RRM 99.2 4.5E-11 1.5E-15 109.3 9.8 76 236-311 7-93 (105)
355 2dit_A HIV TAT specific factor 99.2 5.7E-11 2E-15 109.3 10.3 82 148-229 11-104 (112)
356 3pgw_S U1-70K; protein-RNA com 99.2 3.3E-11 1.1E-15 136.6 9.6 80 149-228 99-183 (437)
357 2pe8_A Splicing factor 45; RRM 99.2 7.9E-11 2.7E-15 107.6 9.0 77 150-226 6-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.1 3.8E-11 1.3E-15 112.9 6.3 77 238-314 3-98 (136)
359 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.5E-10 5E-15 105.0 8.6 66 247-314 27-92 (100)
360 3v4m_A Splicing factor U2AF 65 99.1 2.7E-10 9.3E-15 104.0 8.8 76 236-311 4-96 (105)
361 2voo_A Lupus LA protein; RNA-b 99.1 1.9E-10 6.3E-15 116.4 8.5 75 151-226 108-186 (193)
362 2j8a_A Histone-lysine N-methyl 99.1 8.2E-11 2.8E-15 110.7 4.5 73 153-225 3-94 (136)
363 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.2E-09 4.1E-14 99.0 11.6 75 152-228 10-91 (100)
364 3v4m_A Splicing factor U2AF 65 99.0 4.3E-10 1.5E-14 102.7 7.9 77 150-226 3-96 (105)
365 1jmt_A Splicing factor U2AF 35 99.0 1.7E-10 5.9E-15 105.1 3.5 68 242-309 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.0 6.7E-10 2.3E-14 121.7 8.7 76 148-224 14-96 (345)
367 3tht_A Alkylated DNA repair pr 99.0 8.1E-10 2.8E-14 121.1 9.2 74 236-310 17-97 (345)
368 3s6e_A RNA-binding protein 39; 98.9 2.1E-09 7E-14 99.8 9.1 76 236-311 6-92 (114)
369 3ue2_A Poly(U)-binding-splicin 98.9 1.6E-09 5.6E-14 101.1 7.3 75 237-311 20-108 (118)
370 1jmt_A Splicing factor U2AF 35 98.9 4.9E-10 1.7E-14 102.1 3.3 68 157-224 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.9 3.6E-09 1.2E-13 98.7 7.7 75 151-225 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.8 9.1E-09 3.1E-13 95.4 8.0 76 150-225 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 3.7E-08 1.3E-12 87.0 8.6 75 235-313 5-87 (91)
374 1uw4_A UPF3X; nonsense mediate 98.6 6.3E-08 2.2E-12 85.9 8.4 84 655-740 2-88 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.9E-07 6.5E-12 87.3 10.1 85 236-322 17-105 (121)
376 2l08_A Regulator of nonsense t 98.5 6E-08 2.1E-12 86.6 3.1 84 655-740 10-96 (97)
377 1ufw_A Synaptojanin 2; RNP dom 98.4 2.6E-07 8.9E-12 82.1 6.7 73 235-311 13-94 (95)
378 1owx_A Lupus LA protein, SS-B, 98.4 9.2E-07 3.2E-11 82.6 9.1 73 150-223 16-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.3 9.5E-07 3.3E-11 78.1 6.7 73 151-227 6-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 9.2E-07 3.1E-11 90.5 7.3 63 249-311 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.2 3.7E-06 1.3E-10 76.3 8.0 72 236-308 20-96 (117)
382 3dxb_A Thioredoxin N-terminall 98.0 6.1E-06 2.1E-10 84.3 7.2 74 152-225 124-211 (222)
383 1ufw_A Synaptojanin 2; RNP dom 98.0 6.3E-06 2.2E-10 73.2 4.9 71 151-225 14-93 (95)
384 2l9w_A U4/U6 snRNA-associated- 97.6 0.00011 3.9E-09 66.6 6.7 71 151-222 20-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.5 0.00059 2E-08 61.4 11.0 88 151-250 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.5 0.0006 2E-08 61.4 10.8 83 237-323 8-95 (104)
387 1wey_A Calcipressin 1; structu 97.0 0.00087 3E-08 60.5 5.6 75 238-313 6-85 (104)
388 1wwh_A Nucleoporin 35, nucleop 96.5 0.0068 2.3E-07 56.1 8.0 75 234-311 21-96 (119)
389 1wey_A Calcipressin 1; structu 96.4 0.0054 1.9E-07 55.3 6.6 76 152-228 5-85 (104)
390 1uw4_A UPF3X; nonsense mediate 95.6 0.029 9.9E-07 49.6 7.4 64 153-216 2-72 (91)
391 1whv_A Poly(A)-specific ribonu 95.4 0.028 9.6E-07 50.1 6.7 55 237-295 16-70 (100)
392 3ctr_A Poly(A)-specific ribonu 94.3 0.031 1.1E-06 49.9 4.0 54 238-295 7-60 (101)
393 1whv_A Poly(A)-specific ribonu 94.2 0.054 1.9E-06 48.2 5.2 55 152-210 16-70 (100)
394 3ctr_A Poly(A)-specific ribonu 94.1 0.057 1.9E-06 48.2 5.2 54 153-210 7-60 (101)
395 2l08_A Regulator of nonsense t 94.1 0.1 3.5E-06 46.5 6.8 72 238-309 10-93 (97)
396 1wwh_A Nucleoporin 35, nucleop 94.1 0.13 4.3E-06 47.6 7.6 71 151-224 23-94 (119)
397 3p3d_A Nucleoporin 53; structu 93.2 0.072 2.5E-06 50.0 4.4 71 238-310 8-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 92.6 0.052 1.8E-06 61.5 3.1 57 236-293 52-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 91.7 0.064 2.2E-06 60.7 2.4 56 151-207 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 85.8 0.48 1.6E-05 44.4 3.4 71 152-224 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 71.1 8.7 0.0003 43.9 8.4 56 237-296 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 66.9 11 0.00037 43.1 8.0 56 152-211 440-495 (507)
403 4eyt_A Telomerase associated p 31.2 2E+02 0.007 24.9 8.1 72 238-312 13-91 (129)
404 2g0c_A ATP-dependent RNA helic 22.1 1.1E+02 0.0039 24.8 4.9 59 248-310 12-75 (76)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.6e-32 Score=290.84 Aligned_cols=237 Identities=16% Similarity=0.231 Sum_probs=199.7
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 149 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~~e 149 (818)
.+.++|++||.++++.++.++|+.+|-+.+.. +.++|++||.|.+.+.|. .+++..+.+....+.. .
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-----~ 92 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-----Q 92 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----c
Confidence 47899999999999999999999999223433 567899999999987654 2333444443333332 2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|+.||.|..+++ +++++|||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999998873 5678999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccceeeecCCCCC-CHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCcc
Q 003463 225 IPKDNPSDKDLNQGTLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 299 (818)
Q Consensus 225 ~pk~~~~~~~~~~~tL~V~NLp~~v-teedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i 299 (818)
.++.... ......+|||+|||.++ |+++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|+..|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 33456799999999996 99999999999999999875 345689999999999999999999999999
Q ss_pred CCceEEEEecCCCcccchhhh
Q 003463 300 AGKRIKLEPSRPGGARRNLML 320 (818)
Q Consensus 300 ~Gr~L~V~~a~~~~~r~~~~~ 320 (818)
.|++|+|.|++++..++..+.
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp TTEECEEEECCSSSCHHHHHH
T ss_pred CCeEEEEEEecCCCcccchhh
Confidence 999999999999887665443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=1.2e-31 Score=286.75 Aligned_cols=230 Identities=18% Similarity=0.275 Sum_probs=189.2
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc---cCccccCCCCccccCCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTVAGEHPY 147 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~---~~~~~l~n~~~~~~g~~~~ 147 (818)
.+.++|++||.++++.++.++|..+|.| .|..+.. .++|++||.|.+.+.|.. +.+..+.+....+..
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~---- 114 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH---- 114 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE----
Confidence 5789999999999999999999999987 3444543 357999999999886553 333333333222222
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG-~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...++|||+|||.++++++|+++|+.|| .|..|++ .++++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 115 --~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 115 --LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred --CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 2578999999999999999999999999 9999984 34689999999999999999999999999999999999
Q ss_pred ccCCCCCCCC---CCCCccceeeecCCCC-CCHHHHHHHhhccCCeEEEEec------CCCCceEEEEEcCHHHHHHHHH
Q 003463 223 FSIPKDNPSD---KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALK 292 (818)
Q Consensus 223 ~a~pk~~~~~---~~~~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~------g~srG~aFVeF~d~e~A~~Ai~ 292 (818)
++.++..... ......+|||+|||.. +|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 9987654332 2334579999999999 9999999999999999999863 667899999999999999999
Q ss_pred HcCCCccCCceEEEEecCCC
Q 003463 293 SLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 293 ~LnG~~i~Gr~L~V~~a~~~ 312 (818)
.|||..|.|++|+|.|++++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2e-29 Score=258.59 Aligned_cols=166 Identities=19% Similarity=0.349 Sum_probs=146.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..|.++|||+|||.++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 357899999999999999999999999999999984 577899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 224 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 224 a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
+...... ......+|||+|||+.+|+++|+++|++||.|+.|++ .+.++|||||+|.+.++|.+|++.|||..|.
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8654321 2224568999999999999999999999999999976 3446899999999999999999999999999
Q ss_pred CceEEEEecCCCcccc
Q 003463 301 GKRIKLEPSRPGGARR 316 (818)
Q Consensus 301 Gr~L~V~~a~~~~~r~ 316 (818)
|++|+|++++++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876543
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-28 Score=236.68 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=142.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
|+|||+|||.++|+++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999984 35678999999999999999999999999999999999987665
Q ss_pred CCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCce
Q 003463 229 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 303 (818)
Q Consensus 229 ~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~ 303 (818)
.. ......+|||+|||..+|+++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3345679999999999999999999999999999876 3556889999999999999999999999999999
Q ss_pred EEEEecCC
Q 003463 304 IKLEPSRP 311 (818)
Q Consensus 304 L~V~~a~~ 311 (818)
|+|.||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=7.4e-28 Score=235.04 Aligned_cols=155 Identities=23% Similarity=0.429 Sum_probs=141.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
++++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999983 56688999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
++.. .....+|+|+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 7543 335679999999999999999999999999999875 4455799999999999999999999999998
Q ss_pred C--ceEEEEec
Q 003463 301 G--KRIKLEPS 309 (818)
Q Consensus 301 G--r~L~V~~a 309 (818)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=9.1e-28 Score=233.52 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=140.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
++++|||+|||.++++++|+++|+.||.|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999874 56788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6542 335578999999999999999999999999999876 3446899999999999999999999999999
Q ss_pred Cce--EEEEec
Q 003463 301 GKR--IKLEPS 309 (818)
Q Consensus 301 Gr~--L~V~~a 309 (818)
|+. |+|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888886
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3.2e-27 Score=244.87 Aligned_cols=164 Identities=26% Similarity=0.355 Sum_probs=147.0
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 149 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 149 e~~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
..++++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|+.|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35689999999999 99999999999999999999976666899999999999999999999999999999999998754
Q ss_pred CCCCCC-------------------------------CCCccceeeecCCCCCCHHHHHHHhhccC-CeEEEEecCCCCc
Q 003463 228 DNPSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRH 275 (818)
Q Consensus 228 ~~~~~~-------------------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~~g~srG 275 (818)
.....+ .....+|||+|||..+++++|+++|++|| .|..|++....+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211100 11246899999999999999999999999 9999999777789
Q ss_pred eEEEEEcCHHHHHHHHHHcCCCccC-CceEEEEecCCC
Q 003463 276 HKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 312 (818)
Q Consensus 276 ~aFVeF~d~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~~~ 312 (818)
+|||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.4e-27 Score=242.76 Aligned_cols=163 Identities=20% Similarity=0.380 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
+.++|||+|||.++|+++|+++|+.||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999985 56789999999999999999999999999999999998876
Q ss_pred CCCCCCC-------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHH
Q 003463 226 PKDNPSD-------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 226 pk~~~~~-------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
....... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 5432110 1234469999999999999999999999999999976 345689999999999999999999
Q ss_pred cCCCccCCceEEEEecCCCc
Q 003463 294 LNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 294 LnG~~i~Gr~L~V~~a~~~~ 313 (818)
|||..|.|+.|+|.|++++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5.9e-28 Score=238.17 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=144.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE----EeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v----~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 4568999999999999999999999999864331 1357789999999999999999995 9999999999999999
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 225 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 225 ~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
.++... ......+|||+|||..+|+++|+++|++||.|..+..++.++|+|||+|.+.++|.+|++.|||..+.|+.|
T Consensus 89 ~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 89 KGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp CCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred CCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 876532 334567999999999999999999999999999986677889999999999999999999999999999999
Q ss_pred EEEecCCC
Q 003463 305 KLEPSRPG 312 (818)
Q Consensus 305 ~V~~a~~~ 312 (818)
+|+|++++
T Consensus 167 ~v~~a~~k 174 (175)
T 1fje_B 167 SLYYTGEK 174 (175)
T ss_dssp EEEECSSC
T ss_pred EEEecCCC
Confidence 99999875
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=3.2e-27 Score=236.56 Aligned_cols=166 Identities=19% Similarity=0.374 Sum_probs=139.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++|+++|+++|+.||.|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 4456799999999999999999999999999999874 466899999999999999999985 8999999999999
Q ss_pred ccCCCCCCCC--CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcC
Q 003463 223 FSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 223 ~a~pk~~~~~--~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
++.++..... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 9876543221 2234579999999999999999999999999999976 455689999999999999999986 8
Q ss_pred CCccCCceEEEEecCCCccc
Q 003463 296 RSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 296 G~~i~Gr~L~V~~a~~~~~r 315 (818)
|..+.|+.|+|.++.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999987654
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=6.4e-27 Score=248.94 Aligned_cols=162 Identities=23% Similarity=0.453 Sum_probs=145.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr----~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
..++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4678999999999999999977 89999999999985 67889999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----------------------------------------------------------------------
Q 003463 223 FSIPKDNPS----------------------------------------------------------------------- 231 (818)
Q Consensus 223 ~a~pk~~~~----------------------------------------------------------------------- 231 (818)
++..+....
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 986544200
Q ss_pred ------------------------------------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCc
Q 003463 232 ------------------------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRH 275 (818)
Q Consensus 232 ------------------------------------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG 275 (818)
.......+|||+|||..+++++|+++|++||.|++|++....+|
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g 245 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 245 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 01123467999999999999999999999999999998776679
Q ss_pred eEEEEEcCHHHHHHHHHHcCCCccC-CceEEEEecC
Q 003463 276 HKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 310 (818)
Q Consensus 276 ~aFVeF~d~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~ 310 (818)
+|||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999999 9999999986
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=6.2e-27 Score=249.28 Aligned_cols=178 Identities=19% Similarity=0.317 Sum_probs=162.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
.++++|||+|||.++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3578999999999999999999999999 999987 7789999999999999999999999999999999999864
Q ss_pred CCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 230 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 230 ~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
...+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2358999999999999999999999999999865 45568999999999999999999999999999999
Q ss_pred EEEecCCCcc-------cchhhhccchhc-cHHHHHHHHhhcC
Q 003463 305 KLEPSRPGGA-------RRNLMLQLNQEL-EQDESRILQHQVG 339 (818)
Q Consensus 305 ~V~~a~~~~~-------r~~~~~ql~~~~-~~~~l~~~f~~~G 339 (818)
+|.++.++.. +..++.++...+ ++++++.+|.+||
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 9999987652 346888999996 8999999999887
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=3.7e-27 Score=237.62 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=145.4
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 151 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 151 ~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
.+++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|+.|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999997666689999999999999999999999999999999999875421
Q ss_pred CCCC-------------------------------CCCccceeeecCCCCCCHHHHHHHhhccC-CeEEEEecCCCCceE
Q 003463 230 PSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHHK 277 (818)
Q Consensus 230 ~~~~-------------------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~~g~srG~a 277 (818)
...+ .....+|||+|||..+++++|+++|++|| .|..+++....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1110 11256899999999999999999999999 999999977779999
Q ss_pred EEEEcCHHHHHHHHHHcCCCccC-CceEEEEecCCC
Q 003463 278 FIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 312 (818)
Q Consensus 278 FVeF~d~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~~~ 312 (818)
||+|.+.++|.+|+..|||..+. |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4.5e-27 Score=230.64 Aligned_cols=153 Identities=16% Similarity=0.345 Sum_probs=139.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
++++|||+|||.++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .+++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 57899999999999999999999999 7 7888865 567999999999999999999 799999999999
Q ss_pred cccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHc
Q 003463 220 DIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 294 (818)
Q Consensus 220 ~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~L 294 (818)
+|.++.+.... ....+|||+|||..+|+++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99987654322 24678999999999999999999999999999976 4556899999999999999999999
Q ss_pred CCCccCCceEEEEec
Q 003463 295 NRSDIAGKRIKLEPS 309 (818)
Q Consensus 295 nG~~i~Gr~L~V~~a 309 (818)
||..+.|++|+|++|
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999997
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2e-27 Score=231.96 Aligned_cols=155 Identities=20% Similarity=0.432 Sum_probs=139.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
++++|||+|||.++|+++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999984 567899999999999999999994 678999999999886
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
++. ......+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 543 2234568999999999999999999999999999975 45678999999999999999998 8999999
Q ss_pred CceEEEEecCCC
Q 003463 301 GKRIKLEPSRPG 312 (818)
Q Consensus 301 Gr~L~V~~a~~~ 312 (818)
|++|+|.+++++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999886
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1.1e-26 Score=238.04 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=137.4
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 151 PSRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 151 ~srtLfV~NLP-~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
++++|||+||| .++++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777799999999999999999999999999999999999864321
Q ss_pred CCC------------C---------------------CCCccceeeecCCCCCCHHHHHHHhhccCCe--EEEEecC---
Q 003463 230 PSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV--KEIRETP--- 271 (818)
Q Consensus 230 ~~~------------~---------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG~I--~~vr~~g--- 271 (818)
... + .....+|||+|||+++|+++|+++|++||.| .++++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123479999999999999999999999999 8887643
Q ss_pred CCCceEEEEEcCHHHHHHHHHHcCCCccCCc----eEEEEec
Q 003463 272 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK----RIKLEPS 309 (818)
Q Consensus 272 ~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr----~L~V~~a 309 (818)
.++|+|||+|.+.++|.+||..|||.+|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3468999999999999999999999999985 5776664
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=1.1e-26 Score=227.77 Aligned_cols=157 Identities=20% Similarity=0.405 Sum_probs=136.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CC--CcccEEEEEEccHHHHHHHHHHhcCcccc---ccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 220 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~--ksrG~AFV~F~d~e~A~~Al~~Lng~~l~---gr~L~ 220 (818)
++++|||+|||.++|+++|+++|++||+|..|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999874 22 78999999999999999999999998876 56777
Q ss_pred ccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 221 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 221 V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
+.++.+... ......+|||+|||..+|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655432 2345679999999999999999999999999999976 344688999999999999999999999
Q ss_pred CccC---CceEEEEecC
Q 003463 297 SDIA---GKRIKLEPSR 310 (818)
Q Consensus 297 ~~i~---Gr~L~V~~a~ 310 (818)
..+. |++|+|.||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=9.8e-27 Score=233.41 Aligned_cols=162 Identities=16% Similarity=0.324 Sum_probs=142.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
.+++|||+|||.++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 6 7777765 678999999999999999999 799999999999
Q ss_pred cccccCCCCCCCC----------------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEE
Q 003463 220 DIHFSIPKDNPSD----------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKF 278 (818)
Q Consensus 220 ~V~~a~pk~~~~~----------------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aF 278 (818)
+|.++.+...... ......+|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999866432110 1134579999999999999999999999999999976 445589999
Q ss_pred EEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 279 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 279 VeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
|+|.+.++|.+|++.|||..+.|+.|+|++++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999998764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=3.2e-26 Score=244.75 Aligned_cols=181 Identities=20% Similarity=0.270 Sum_probs=156.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
....+.++|||+|||.++|+++|+++|+.||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 345678999999999999999999999999999999842 2358999999999999999996 899999999999998
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccC-CeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 224 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 224 a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
+. ..+|||+|||..+++++|+++|++|| .|..|++. +.++|||||+|.+.++|.+|+..|+|..
T Consensus 115 ~~-----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 115 LT-----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp CC-----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CC-----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 62 56899999999999999999999999 99999763 3568999999999999999999999999
Q ss_pred cCCceEEEEecCCCcc-----------cchhhhccchh-ccHHHHHHHHhhcC
Q 003463 299 IAGKRIKLEPSRPGGA-----------RRNLMLQLNQE-LEQDESRILQHQVG 339 (818)
Q Consensus 299 i~Gr~L~V~~a~~~~~-----------r~~~~~ql~~~-~~~~~l~~~f~~~G 339 (818)
+.|+.|+|.++.+... +..++.++... +++++++.+|.+||
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp ETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred eCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 9999999999876543 34578889999 99999999999998
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=8.8e-25 Score=231.10 Aligned_cols=157 Identities=27% Similarity=0.411 Sum_probs=141.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|||.++|+++|+++|+.||.|..|.+ .+++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 345689999999999999999999999999999986 56799999999999999999999999999999999999864
Q ss_pred CCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCC-CccC---
Q 003463 229 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR-SDIA--- 300 (818)
Q Consensus 229 ~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG-~~i~--- 300 (818)
..+|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..||+ ..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 358999999999999999999999999999875 456789999999999999999999954 4444
Q ss_pred CceEEEEecCCCcccc
Q 003463 301 GKRIKLEPSRPGGARR 316 (818)
Q Consensus 301 Gr~L~V~~a~~~~~r~ 316 (818)
+++|.|.++.+.....
T Consensus 168 ~r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 168 PRPVIVEPMEQFDDED 183 (261)
T ss_dssp CCBCEEEECCCEESSS
T ss_pred CceEEEeeccccCccC
Confidence 8999999998765443
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=6e-20 Score=188.11 Aligned_cols=155 Identities=13% Similarity=0.238 Sum_probs=126.5
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc----cCccccCCCCccccCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP 146 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~----~~~~~l~n~~~~~~g~~~ 146 (818)
++.+||++||.+++|.++.++|+.+|.| .|..|..+++++||+||.|.+.+.|.. +....+.+...++.....
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 5789999999999999999999999987 577888899999999999999875542 222223333222222111
Q ss_pred C---CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 147 Y---GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 147 ~---~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
. .....++|||+|||.++|+++|+++|++||.|..|++ .+.++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 1 1224579999999999999999999999999999874 455799999999999999999999999999999999
Q ss_pred ccccCCCC
Q 003463 221 IHFSIPKD 228 (818)
Q Consensus 221 V~~a~pk~ 228 (818)
|.++.++.
T Consensus 175 V~~a~~~~ 182 (213)
T 4f02_A 175 VGRFKSRK 182 (213)
T ss_dssp EEECCCHH
T ss_pred EEEcCCCc
Confidence 99998754
No 22
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=3.6e-19 Score=180.69 Aligned_cols=157 Identities=13% Similarity=0.231 Sum_probs=127.4
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 146 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~ 146 (818)
.+.++|++||.++++.++.++|+.+|.| .+..+..++..+|++||.|.+.+.|. .+.+..+.+....+.....
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5789999999999999999999999987 46667778899999999999987654 2344444444444432222
Q ss_pred C------------CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHh
Q 003463 147 Y------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 209 (818)
Q Consensus 147 ~------------~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~L 209 (818)
. ...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 1 1235689999999999999999999999999999884 4577999999999999999999999
Q ss_pred cCcccccccccccccCCCCCC
Q 003463 210 QNKPLRRRKLDIHFSIPKDNP 230 (818)
Q Consensus 210 ng~~l~gr~L~V~~a~pk~~~ 230 (818)
++..|.|+.|.|.++.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999876543
No 23
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=4.5e-19 Score=172.64 Aligned_cols=150 Identities=21% Similarity=0.326 Sum_probs=124.4
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCC
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 147 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~ 147 (818)
+.++|++||.++++.++.++|+.+|.| .+..+..++.++|++||.|.+.+.|. .+.+..+.+....+....+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 679999999999999999999999987 45566678899999999999987654 23444444444444333322
Q ss_pred -CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccc--ccc
Q 003463 148 -GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKL 219 (818)
Q Consensus 148 -~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g--r~L 219 (818)
...+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..+.| ++|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 3356789999999999999999999999999999874 56678999999999999999999999999987 999
Q ss_pred ccccc
Q 003463 220 DIHFS 224 (818)
Q Consensus 220 ~V~~a 224 (818)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=5.5e-19 Score=176.59 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=121.7
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc---cCccccCCCCccccCC---
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTVAGE--- 144 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~---~~~~~l~n~~~~~~g~--- 144 (818)
.+.++|++||.++++.++.++|..+|.| .|..+..++.++||+||.|.+.+.|.. ..+..+.+....+...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 5789999999999999999999999987 577787889999999999999875542 2222233322222111
Q ss_pred ----CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 145 ----HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 145 ----~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
.+....+.++|||+|||.++|+++|+++|+.||.|..|.+ +++++|||||+|.+.++|++|++. ++..|.
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 1122335689999999999999999999999999999874 567899999999999999999996 799999
Q ss_pred cccccccccCCCCCC
Q 003463 216 RRKLDIHFSIPKDNP 230 (818)
Q Consensus 216 gr~L~V~~a~pk~~~ 230 (818)
|+.|.|.++.++...
T Consensus 172 G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 172 GHNCEVRKALSKQEM 186 (196)
T ss_dssp TEECEEEECC-----
T ss_pred CEEEEEEecCChhHh
Confidence 999999999887654
No 25
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=8.9e-19 Score=169.88 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=123.2
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc----cCccccCCCCccccCCCCC
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPY 147 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~----~~~~~l~n~~~~~~g~~~~ 147 (818)
+.++|++||.++++.++.++|+.+|.| .+..+..++.++|++||.|.+.+.|.. +.+..+.+....+....+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 679999999999999999999999987 466777789999999999999876542 3444444444444333222
Q ss_pred -CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccc--c
Q 003463 148 -GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK--L 219 (818)
Q Consensus 148 -~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~--L 219 (818)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+. |
T Consensus 83 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 2345689999999999999999999999999999874 4667999999999999999999999999999975 6
Q ss_pred ccccc
Q 003463 220 DIHFS 224 (818)
Q Consensus 220 ~V~~a 224 (818)
+|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66664
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=5.8e-19 Score=171.04 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=112.7
Q ss_pred CCcccEEEEEEccHHHHHHHHHHh-cCcccccccccccccCCCC------------CCCCCCCCccceeeecCCCCCCHH
Q 003463 186 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSDKDLNQGTLVVFNLDPSVSNE 252 (818)
Q Consensus 186 ~ksrG~AFV~F~d~e~A~~Al~~L-ng~~l~gr~L~V~~a~pk~------------~~~~~~~~~~tL~V~NLp~~vtee 252 (818)
.+.+|+++|+|.+.++|++|++.+ ++..+.| .+.+.++..+. .........++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356899999999999999999999 9999999 99999876521 112223455799999999999999
Q ss_pred HHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 253 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 253 dL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|+..|||..+.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998764
No 27
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.7e-19 Score=169.77 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=121.7
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccC---CC
Q 003463 76 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG---EH 145 (818)
Q Consensus 76 e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g---~~ 145 (818)
.++|++||.++++.++.++|+.+|.| .+..+. .+.++|++||.|.+.+.|. .+.+..+.+....+.. ..
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999987 344444 5778999999999987554 3344444444333321 22
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
.....+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 234456789999999999999999999999999999874 467899999999999999999999999999999999
Q ss_pred ccccC
Q 003463 221 IHFSI 225 (818)
Q Consensus 221 V~~a~ 225 (818)
|.|+.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99985
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=1.6e-19 Score=175.93 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=122.7
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccccCc--cccCCCCccccCCCCC-
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLH--YSVPNGAGTVAGEHPY- 147 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~~~~--~~l~n~~~~~~g~~~~- 147 (818)
.+.++|++||.++++.++.++|+.+|.| .+..+..++.++||+||.|.+.+.|..... ..+.+....+....+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchh
Confidence 3679999999999999999999999987 456666789999999999998875542211 1122222222211111
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++ +++..+.|++|+|.
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 1234679999999999999999999999999999983 46789999999999999999998 89999999999999
Q ss_pred ccCCC
Q 003463 223 FSIPK 227 (818)
Q Consensus 223 ~a~pk 227 (818)
++.|+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=1.1e-18 Score=170.87 Aligned_cols=152 Identities=15% Similarity=0.265 Sum_probs=120.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCC--CcccEEEEEecChhhcc----ccCccccCCC---Cccc
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQES--LSMSMSKISISDSASGN----GLLHYSVPNG---AGTV 141 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~--~skG~a~v~f~~~~~a~----~~~~~~l~n~---~~~~ 141 (818)
.+.++|++||.++++.++.++|..+|.| .|..+..++ .++||+||.|.+.+.|. .+.+..+..+ ...+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3679999999999999999999999987 466676665 89999999999987554 2333233221 1111
Q ss_pred --cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 142 --AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 142 --~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
.........+.++|||+|||.++|+++|+++|++||.|..+++ .++++|||||+|.+.++|++|++.|+|..+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 1111223346789999999999999999999999999999874 4567999999999999999999999998776
Q ss_pred ---cccccccccC
Q 003463 216 ---RRKLDIHFSI 225 (818)
Q Consensus 216 ---gr~L~V~~a~ 225 (818)
+++|.|.|+.
T Consensus 163 ~g~~~~l~V~~ad 175 (175)
T 3nmr_A 163 EGCSSPMVVKFAD 175 (175)
T ss_dssp TTCSSCCEEEECC
T ss_pred CCCCCCeEEEecC
Confidence 4999999873
No 30
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=3e-18 Score=167.05 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=102.9
Q ss_pred CCCcccEEEEEEccHHHHHHHHHHhcCcccc-------cccccccccCCCC--CCCCCCCCccceeeecCCCCCCHHHHH
Q 003463 185 ACKHRGFVMISYYDIRAARTAMRALQNKPLR-------RRKLDIHFSIPKD--NPSDKDLNQGTLVVFNLDPSVSNEDLR 255 (818)
Q Consensus 185 ~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~-------gr~L~V~~a~pk~--~~~~~~~~~~tL~V~NLp~~vteedL~ 255 (818)
..+++|||||+|.+.++|++|++.+++.... +............ ..........+|||+|||+++|+++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4468999999999999999999887753322 2222222111111 111223446799999999999999999
Q ss_pred HHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 256 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 256 ~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999976 466799999999999999999999999999999999999987653
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.77 E-value=1.7e-19 Score=177.55 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=126.9
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEE--EeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCccccCCCC--
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGME--LEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAGEHP-- 146 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~--V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~~~~g~~~-- 146 (818)
...++|++||.++++.++.++|..+|.+. +..+..++.++||+||.|.+.+.|. .+++..+.+....+....+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 47899999999999999999999988652 3455667889999999999887554 3444444444333332222
Q ss_pred -CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 147 -YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 147 -~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
....+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|+|..|.|+.|.|.|+.
T Consensus 93 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 93 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 2334678999999999999999999999999999885577899999999999999999999999999999999999998
Q ss_pred CC
Q 003463 226 PK 227 (818)
Q Consensus 226 pk 227 (818)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 32
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=5.2e-18 Score=165.99 Aligned_cols=148 Identities=14% Similarity=0.270 Sum_probs=118.4
Q ss_pred ccccccccCCCCCChHHHHHhhcCC----C-------cEEEeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCc
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSG----G-------GMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAG 139 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~----G-------~i~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~ 139 (818)
.+.++|++||.++++.++.++|+.+ | .| .+......+|++||.|.+.+.|. .+++..+.+...
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v---~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE---EEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCce---eeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 3789999999999999999999999 4 33 12234566899999999887554 333333433333
Q ss_pred cccCCCCC-CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcc
Q 003463 140 TVAGEHPY-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 213 (818)
Q Consensus 140 ~~~g~~~~-~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~ 213 (818)
.+...... .....++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 33322222 2234689999999999999999999999999999884 56779999999999999999999999999
Q ss_pred ccccccccccc
Q 003463 214 LRRRKLDIHFS 224 (818)
Q Consensus 214 l~gr~L~V~~a 224 (818)
+.|++|.|.+|
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999986
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=6.9e-18 Score=168.87 Aligned_cols=156 Identities=12% Similarity=0.210 Sum_probs=120.9
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---E-----EeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCcccc
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---E-----LEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVA 142 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~-----V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~~~~ 142 (818)
.+.++|++||.++++.++.++|+.+|.+ . ...+...+.++||+||.|.+.+.|. .+++..+.+....+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~ 83 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence 4789999999999999999999999522 0 1123334677899999999877554 233333333222221
Q ss_pred CCCC---------------------CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEE
Q 003463 143 GEHP---------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISY 196 (818)
Q Consensus 143 g~~~---------------------~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F 196 (818)
.... ....+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 84 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 1111 11246789999999999999999999999999999884 566799999999
Q ss_pred ccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 197 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 197 ~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
.+.++|++|++.|+|..|.|+.|.|.++.++..
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999987653
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=7.1e-18 Score=156.49 Aligned_cols=103 Identities=16% Similarity=0.317 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
.+++|||+|||+++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999874 4557899999999999999999999999999999999999876
Q ss_pred CCCCC----CCCCccceeeecCCCCCCHHH
Q 003463 228 DNPSD----KDLNQGTLVVFNLDPSVSNED 253 (818)
Q Consensus 228 ~~~~~----~~~~~~tL~V~NLp~~vteed 253 (818)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 122335799999999999864
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=2.6e-17 Score=174.72 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=119.2
Q ss_pred ccccccccCCCCCChHHHH----HhhcCCCcEEEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDY----DIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 145 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~----diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~ 145 (818)
.+.+||++||.++++.++. ++|..+|.|.-..-..++..+||+||.|.+.+.|. .+++..+.+...++....
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 4789999999999999955 89999999843232337889999999999877554 233333332211111000
Q ss_pred --------------------------------------------------------------------------------
Q 003463 146 -------------------------------------------------------------------------------- 145 (818)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (818)
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~ 168 (282)
T 3pgw_A 89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG 168 (282)
T ss_pred cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence
Q ss_pred --------------------------------CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEE
Q 003463 146 --------------------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVM 193 (818)
Q Consensus 146 --------------------------------~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AF 193 (818)
.....++++|||+|||.++++++|+++|++||.|..|++....+||||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~af 248 (282)
T 3pgw_A 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248 (282)
T ss_pred CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEE
Confidence 012235689999999999999999999999999999987655579999
Q ss_pred EEEccHHHHHHHHHHhcCcccc-cccccccccC
Q 003463 194 ISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 225 (818)
Q Consensus 194 V~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~ 225 (818)
|+|.+.++|++|++.|+|..|. |+.|+|.|++
T Consensus 249 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 249 VEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999 9999999975
No 36
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=3.6e-17 Score=169.27 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=119.9
Q ss_pred ccccccccCCC-CCChHHHHHhhcCCCcEE---EeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC
Q 003463 74 MDDFDLRGLPS-SLEDLEDYDIFGSGGGME---LEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 145 (818)
Q Consensus 74 ~~e~~V~~Lp~-s~~E~el~diF~~~G~i~---V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~ 145 (818)
...++|++||. ++++.++.++|+.+|.|. |..+. +||+||.|.+.+.|. .+++..+.+....+....
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 47899999999 999999999999999873 33332 789999999987554 234444433322221111
Q ss_pred C------------------------------------CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEeCCCc
Q 003463 146 P------------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKH 188 (818)
Q Consensus 146 ~------------------------------------~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG-~I~~v~~~~ks 188 (818)
. ....++++|||+|||.++++++|+++|++|| .|..|++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 0 0123468999999999999999999999999 99999986667
Q ss_pred ccEEEEEEccHHHHHHHHHHhcCcccc-cccccccccCCC
Q 003463 189 RGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 227 (818)
Q Consensus 189 rG~AFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~pk 227 (818)
+|||||+|.+.++|++|++.|+|..+. |++|+|.|+.++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999999999999 999999998763
No 37
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=164.77 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=118.3
Q ss_pred cccccccCCC-CCChHHHHHhhcCCCcE-EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCC--
Q 003463 75 DDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP-- 146 (818)
Q Consensus 75 ~e~~V~~Lp~-s~~E~el~diF~~~G~i-~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~-- 146 (818)
+.++|++||. ++++.++.++|+.+|.| .|.+-.. .+|++||.|.+.+.|. .+++..+.+....+.....
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT---CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 6799999999 99999999999999987 2322211 1789999999877554 2333334333222211100
Q ss_pred ----------------------------------CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEeCCCcccE
Q 003463 147 ----------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRGF 191 (818)
Q Consensus 147 ----------------------------------~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG-~I~~v~~~~ksrG~ 191 (818)
....++++|||+|||.++++++|+++|++|| .|..+++....+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~ 160 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKM 160 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSC
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcE
Confidence 0123578999999999999999999999999 99999986667999
Q ss_pred EEEEEccHHHHHHHHHHhcCcccc-cccccccccCCC
Q 003463 192 VMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 227 (818)
Q Consensus 192 AFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~pk 227 (818)
|||+|.+.++|++|++.|+|..+. |++|+|.|+.++
T Consensus 161 afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 161 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999999999 999999998764
No 38
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=2.1e-16 Score=161.47 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=109.4
Q ss_pred cccccccCC-CCCChHHHHHhhcCCCcEE-EeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCC----
Q 003463 75 DDFDLRGLP-SSLEDLEDYDIFGSGGGME-LEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGE---- 144 (818)
Q Consensus 75 ~e~~V~~Lp-~s~~E~el~diF~~~G~i~-V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~---- 144 (818)
..++|++|+ ..+++.+|+++|+.+|.|. |..-. ..+|++||.|.+.+.|. .+++..+.+....+...
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK---SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT---TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 679999999 8999999999999999983 32211 14799999999987554 23333333321111100
Q ss_pred ------------------------CC----------CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCE--EEEEeC---
Q 003463 145 ------------------------HP----------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDI--RTLYTA--- 185 (818)
Q Consensus 145 ------------------------~~----------~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I--~~v~~~--- 185 (818)
.. ....++++|||+|||.++|+++|+++|++||.| ..+++.
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 00 012356799999999999999999999999998 777742
Q ss_pred CCcccEEEEEEccHHHHHHHHHHhcCcccccc----ccccccc
Q 003463 186 CKHRGFVMISYYDIRAARTAMRALQNKPLRRR----KLDIHFS 224 (818)
Q Consensus 186 ~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr----~L~V~~a 224 (818)
++.+|+|||+|.+.++|.+|+..|+|..|.|+ ++.|+++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 34569999999999999999999999999876 4555543
No 39
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=7.6e-16 Score=162.51 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=117.4
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE-EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 148 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i-~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~~ 148 (818)
.+.++|++||.++++.++.++|+.+|.| .|.. .+.+|++||.|.+.+.|. .+++..+.+....+...
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i----~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a---- 93 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI----NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA---- 93 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE----eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec----
Confidence 4679999999999999999999999987 2322 245799999999987654 23444444443333322
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcC-cccc---ccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQN-KPLR---RRKLD 220 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng-~~l~---gr~L~ 220 (818)
.+.++|||+|||.++|+++|+++|+.||.|..|.+ +++++|||||+|.+.++|.+|++.|++ ..+. +++|.
T Consensus 94 -~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 -THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp -CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred -ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35789999999999999999999999999999874 567899999999999999999999955 4443 89999
Q ss_pred ccccCCCC
Q 003463 221 IHFSIPKD 228 (818)
Q Consensus 221 V~~a~pk~ 228 (818)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987654
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=7.8e-16 Score=139.21 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=70.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..+|||+|||+++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 458999999999999999999999999999975 466789999999999999999999999999999999999986
No 41
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=6.4e-16 Score=147.66 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=77.3
Q ss_pred cEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe
Q 003463 190 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 269 (818)
Q Consensus 190 G~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~ 269 (818)
-++|++|.+...|..|+..+++....|+. .+.+..+ ........+|||+|||.++|+++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36788999999999999999887766553 2233332 233445679999999999999999999999999999976
Q ss_pred -----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 270 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 270 -----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
++.++|||||+|.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999876543
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=5.9e-16 Score=142.82 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=92.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..++++|||+|||.++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346799999999999999999999999999999985 566799999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCC
Q 003463 227 KDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 263 (818)
Q Consensus 227 k~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~ 263 (818)
+... .+++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4422 467778899999999999984
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=137.36 Aligned_cols=76 Identities=22% Similarity=0.472 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3579999999999999999999999999999873 57889999999999999999999999999999999999997
Q ss_pred C
Q 003463 226 P 226 (818)
Q Consensus 226 p 226 (818)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=2.3e-15 Score=139.51 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=71.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
..+|||+|||+++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|++||+.|+|..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 458999999999999999999999999999876 23458999999999999999999999999999999999998866
Q ss_pred ccc
Q 003463 314 ARR 316 (818)
Q Consensus 314 ~r~ 316 (818)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=137.40 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=75.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||+.+++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3568999999999999999999999999999976 46778999999999999999999999999999999999998
Q ss_pred CCcccchh
Q 003463 311 PGGARRNL 318 (818)
Q Consensus 311 ~~~~r~~~ 318 (818)
.+..++.+
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 77655443
No 46
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=9.6e-15 Score=134.66 Aligned_cols=102 Identities=21% Similarity=0.405 Sum_probs=90.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3568999999999999999999999999999987 45678999999999999999999999999999999999998765
Q ss_pred ccchhhhccchhccHHHHHHHHhhcCCC
Q 003463 314 ARRNLMLQLNQELEQDESRILQHQVGSP 341 (818)
Q Consensus 314 ~r~~~~~ql~~~~~~~~l~~~f~~~GsP 341 (818)
.. .++.....++++..+|.++|.+
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 43 4556677888999999999854
No 47
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=133.86 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=81.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 232 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~ 232 (818)
++|||+|||.++|+++|+++|++||+|..|.+...++|||||+|.+.++|++|++.|++..+.|+.|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986444799999999999999999999999999999999999987653322
Q ss_pred C------CCCccceeeecCC
Q 003463 233 K------DLNQGTLVVFNLD 246 (818)
Q Consensus 233 ~------~~~~~tL~V~NLp 246 (818)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1124689999997
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=129.03 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=74.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 5567899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987643
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=132.54 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=69.7
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC-CeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcC-CCccCCceEEEEecC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIAGKRIKLEPSR 310 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~Ln-G~~i~Gr~L~V~~a~ 310 (818)
++|||+|||+++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|++|++.++ +..+.|++|+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8998865 46789999999999999999999874 568999999999998
Q ss_pred CCcc
Q 003463 311 PGGA 314 (818)
Q Consensus 311 ~~~~ 314 (818)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 50
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.6e-14 Score=140.60 Aligned_cols=126 Identities=23% Similarity=0.357 Sum_probs=95.1
Q ss_pred EeecCCCCCcccEEEEEecChhhccccC----ccccCCC-------C-------ccccCCCCCCCCCCcEEEEcCCCCCC
Q 003463 103 LEGEPQESLSMSMSKISISDSASGNGLL----HYSVPNG-------A-------GTVAGEHPYGEHPSRTLFVRNINSNV 164 (818)
Q Consensus 103 V~~d~~t~~skG~a~v~f~~~~~a~~~~----~~~l~n~-------~-------~~~~g~~~~~e~~srtLfV~NLP~~v 164 (818)
|..+.. ..+||+||.|.+.+.|.... .....++ . ............+.++|||+|||.++
T Consensus 5 l~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 5 LILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 444543 58899999999887654221 0000111 0 00011122233457899999999999
Q ss_pred cHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCC
Q 003463 165 EDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 230 (818)
Q Consensus 165 TEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~ 230 (818)
++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++...
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999984 5678999999999999999999999999999999999999876543
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=129.44 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887644
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=131.92 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC--cccccccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~~a~p 226 (818)
..+.++|||+|||+++||++|+++|++||+|.+|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|.++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 34679999999999999999999999999999998643 489999999999999999998864 789999999999987
Q ss_pred CCCCC
Q 003463 227 KDNPS 231 (818)
Q Consensus 227 k~~~~ 231 (818)
+....
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 76544
No 53
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=131.69 Aligned_cols=80 Identities=13% Similarity=0.269 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcc--cccccccccccC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 225 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~--l~gr~L~V~~a~ 225 (818)
...|+++|||+|||.++|+++|+++|++||.|.++++. +.||||||+|.+.++|++|++.|++.. +.|++|+|.|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34588999999999999999999999999999999863 468999999999999999999999876 789999999998
Q ss_pred CCC
Q 003463 226 PKD 228 (818)
Q Consensus 226 pk~ 228 (818)
+++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=128.29 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=132.73 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhc-Cccccccccccccc
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 224 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG-~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Ln-g~~l~gr~L~V~~a 224 (818)
+++|||+|||.++||++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 7988873 57789999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887643
No 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=133.09 Aligned_cols=79 Identities=18% Similarity=0.385 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||+++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999999999999984 578999999999999999999999999999999999999
Q ss_pred cCCC
Q 003463 224 SIPK 227 (818)
Q Consensus 224 a~pk 227 (818)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=128.03 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=73.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....++|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456799999999999999999999999999999763 456799999999999999999999999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 58
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=128.77 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=74.8
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec------CCCCceEEEEEcCHHHHHHHHHHc-CCCccCCceEE
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIK 305 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~------g~srG~aFVeF~d~e~A~~Ai~~L-nG~~i~Gr~L~ 305 (818)
......+|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34456799999999999999999999999999999873 445899999999999999999999 99999999999
Q ss_pred EEecCCCccc
Q 003463 306 LEPSRPGGAR 315 (818)
Q Consensus 306 V~~a~~~~~r 315 (818)
|++++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887643
No 59
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=1e-14 Score=143.58 Aligned_cols=122 Identities=18% Similarity=0.279 Sum_probs=72.5
Q ss_pred EEEccHHHHHHHHHHhcCcccc--cccccccccCCCC---------------C-CCCCCCCccceeeecCCCCCCHHHHH
Q 003463 194 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD---------------N-PSDKDLNQGTLVVFNLDPSVSNEDLR 255 (818)
Q Consensus 194 V~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~pk~---------------~-~~~~~~~~~tL~V~NLp~~vteedL~ 255 (818)
.+|.+.++|+.|+..+++.... |+.+......... . .........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999988887665 5555444321100 0 01122334689999999999999999
Q ss_pred HHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 256 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 256 ~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
++|++||.|..|++ ++.++|||||+|.+.++|.+||..|||..|.|+.|+|.|+.++..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999976 3446899999999999999999999999999999999999876644
No 60
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-14 Score=129.67 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=73.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
....++|||+|||.++|+++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999876 344689999999999999999999999999999999999988
Q ss_pred Ccc
Q 003463 312 GGA 314 (818)
Q Consensus 312 ~~~ 314 (818)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=132.99 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC--CccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~~~ 313 (818)
...+|||+|||+++|+++|+++|++||.|++|++.. .||||||+|.+.++|++|++.|++ ..|.|++|+|+|++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 456899999999999999999999999999999864 489999999999999999998864 78999999999998876
Q ss_pred cc
Q 003463 314 AR 315 (818)
Q Consensus 314 ~r 315 (818)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 62
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=130.32 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCc--cCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~--i~Gr~L~V~~a~~~~ 313 (818)
..++|||+|||.++|+++|+++|++||.|.+|++. +.||+|||+|.+.++|.+|++.|++.. +.|++|+|+||+++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 45789999999999999999999999999999885 468999999999999999999999886 789999999998754
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=125.55 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=69.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3568999999999999999999999999999976 44568999999999999999999999999999999999998
Q ss_pred CC
Q 003463 311 PG 312 (818)
Q Consensus 311 ~~ 312 (818)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 64
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.1e-14 Score=128.61 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=75.5
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec---CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~---g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
......+|||+|||+.+|+++|+++|++||.|..|++. +..++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34466799999999999999999999999999999763 467899999999999999999999999999999999999
Q ss_pred CCCcccc
Q 003463 310 RPGGARR 316 (818)
Q Consensus 310 ~~~~~r~ 316 (818)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=126.22 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457899999999999999999999999999999985 46689999999999999999999 99999999999999
Q ss_pred ccCCCCCC
Q 003463 223 FSIPKDNP 230 (818)
Q Consensus 223 ~a~pk~~~ 230 (818)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99877654
No 66
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.7e-14 Score=127.34 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..-|||+||++.+|+++|+++|.+||+|+++++. .++|||||+|.+.++|.+|++.||+..+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999985 479999999999999999999999999999999999983
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.7e-14 Score=127.75 Aligned_cols=84 Identities=15% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999984 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.5e-14 Score=127.02 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC---CCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g---~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....++|||+|||..+++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|+|..+.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34567999999999999999999999999999997633 357999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003463 311 PGGARR 316 (818)
Q Consensus 311 ~~~~r~ 316 (818)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 69
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2.1e-14 Score=132.79 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=71.7
Q ss_pred ccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccC-CeEEEEec-CCCCceEEEEEcCHHHHHHHHHHc
Q 003463 217 RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALKSL 294 (818)
Q Consensus 217 r~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~~-g~srG~aFVeF~d~e~A~~Ai~~L 294 (818)
.++.+.|+.+.. ...+|||+|||+++++++|+++|++|| .|..+++. ..++|||||+|.+.++|++||+.|
T Consensus 15 ~~~~~~~~~~p~-------~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 15 VPRGSHMSKLPA-------KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp ----------CC-------CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT
T ss_pred eecchhcCCCCC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc
Confidence 345566654322 356899999999999999999999999 99999883 568999999999999999999999
Q ss_pred CCCccCCceEEEEecCCCc
Q 003463 295 NRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 295 nG~~i~Gr~L~V~~a~~~~ 313 (818)
||.++.|++|+|++++.+.
T Consensus 88 ng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 88 NNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp TTEEETTEEEEEEESCC--
T ss_pred CCCEECCeEEEEEECCCCC
Confidence 9999999999999997654
No 70
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=133.43 Aligned_cols=91 Identities=24% Similarity=0.333 Sum_probs=77.1
Q ss_pred ccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC--ccccccc
Q 003463 141 VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 218 (818)
Q Consensus 141 ~~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng--~~l~gr~ 218 (818)
..+.......++++|||+|||+++||++|+++|++||.|..|++. +.+|||||+|.+.++|++|++.+++ ..|.|++
T Consensus 20 ~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp --CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344444556688999999999999999999999999999999864 3589999999999999999998874 6899999
Q ss_pred ccccccCCCCCCCC
Q 003463 219 LDIHFSIPKDNPSD 232 (818)
Q Consensus 219 L~V~~a~pk~~~~~ 232 (818)
|+|.++.++.....
T Consensus 99 l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 99 IYIQFSNHKELKTD 112 (119)
T ss_dssp CEEEECSSSSCCCC
T ss_pred EEEEEccCCCCCcc
Confidence 99999987765443
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=131.23 Aligned_cols=76 Identities=22% Similarity=0.396 Sum_probs=68.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCC--eEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCC----ccCCceE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGKRI 304 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~--I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~----~i~Gr~L 304 (818)
.-.||||+|||+++|+++|+++|++||. |.+|++ ++.++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4468999999999999999999999995 567764 4678999999999999999999999997 4899999
Q ss_pred EEEecCC
Q 003463 305 KLEPSRP 311 (818)
Q Consensus 305 ~V~~a~~ 311 (818)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=3e-14 Score=123.19 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=70.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
.+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999875 3556899999999999999999999999999999999999876
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=128.21 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445679999999999999999999999999999976 445688999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887643
No 74
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=128.21 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
+....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 334567899999999999999999999999999999984 367899999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 003463 221 IHFSIPKDN 229 (818)
Q Consensus 221 V~~a~pk~~ 229 (818)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999987654
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=4.9e-14 Score=124.42 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356799999999999999999999999999999874 56689999999999999999999999999999999999998
Q ss_pred CCCC
Q 003463 226 PKDN 229 (818)
Q Consensus 226 pk~~ 229 (818)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.4e-14 Score=125.32 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccC--CceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~--Gr~L~V~~a~~~~ 313 (818)
..++|||+|||..+|+++|+++|++||.|..|++... ++||||+|.+.++|++|++.|||..+. |++|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4568999999999999999999999999999988643 899999999999999999999999999 9999999999875
Q ss_pred c
Q 003463 314 A 314 (818)
Q Consensus 314 ~ 314 (818)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.3e-14 Score=125.39 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=71.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.....+|||+|||..+++++|+++|++||.|..|++. +..+|||||+|.+.++|.+|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999763 55688999999999999999999999999999999999
Q ss_pred cCC
Q 003463 309 SRP 311 (818)
Q Consensus 309 a~~ 311 (818)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 976
No 78
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=3.1e-14 Score=131.39 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=73.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45579999999999999999999999999999875 4556789999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 987643
No 79
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=125.95 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=73.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ |++..+.|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999986 35578999999999999999998 9999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987643
No 80
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=128.35 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCc--cccccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFS 224 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~--~l~gr~L~V~~a 224 (818)
....++++|||+|||.++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|++. .+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345678999999999999999999999999999999864 35899999999999999999988765 489999999999
Q ss_pred CCCCC
Q 003463 225 IPKDN 229 (818)
Q Consensus 225 ~pk~~ 229 (818)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 81
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=127.45 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHc--CCCccCCceEEEEecCCC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL--NRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~L--nG~~i~Gr~L~V~~a~~~ 312 (818)
...++|||+|||+++++++|+++|++||.|.+|++.. .+|||||+|.+.++|.+|++.| ++..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3457999999999999999999999999999998754 4899999999999999999987 467899999999999877
Q ss_pred ccc
Q 003463 313 GAR 315 (818)
Q Consensus 313 ~~r 315 (818)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 644
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=3.2e-14 Score=126.98 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
|+++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999984 36779999999999999999999999999999999999998
Q ss_pred CCC
Q 003463 226 PKD 228 (818)
Q Consensus 226 pk~ 228 (818)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=127.44 Aligned_cols=83 Identities=25% Similarity=0.490 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEEccHHHHHHHHHHh-cCccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLD 220 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~------~~ksrG~AFV~F~d~e~A~~Al~~L-ng~~l~gr~L~ 220 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.| ++..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4457899999999999999999999999999999985 4557999999999999999999999 99999999999
Q ss_pred ccccCCCCCC
Q 003463 221 IHFSIPKDNP 230 (818)
Q Consensus 221 V~~a~pk~~~ 230 (818)
|.++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 84
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=5.4e-14 Score=129.60 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.....+|||+|||..+++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|+|..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 445689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=124.27 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 78999999999999999999999999999999999988764
No 86
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=3.8e-14 Score=123.11 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=69.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||+++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999975 34568999999999999999999999999999999999985
No 87
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-14 Score=124.75 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999984 4668999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 88
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.6e-14 Score=124.81 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=72.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3568999999999999999999999999999976 35568999999999999999999999999999999999998
Q ss_pred CCcc
Q 003463 311 PGGA 314 (818)
Q Consensus 311 ~~~~ 314 (818)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8654
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.7e-14 Score=127.48 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34456799999999999999999999999999999885 4557899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 90
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.5e-14 Score=125.84 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999884 467789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003463 224 SIPKDN 229 (818)
Q Consensus 224 a~pk~~ 229 (818)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987653
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.5e-14 Score=127.58 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457899999999999999999999999999999884 56789999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003463 223 FSIPKDNP 230 (818)
Q Consensus 223 ~a~pk~~~ 230 (818)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 92
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=124.43 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999884 5668999999999999999999999999999999999998
Q ss_pred CCC
Q 003463 225 IPK 227 (818)
Q Consensus 225 ~pk 227 (818)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 93
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.6e-14 Score=123.35 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=70.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+++++|+++|++||.|..|++. +.+++||||+|.+.++|++|++.|||..+.|++|+|+|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999999763 456899999999999999999999999999999999998
Q ss_pred C
Q 003463 310 R 310 (818)
Q Consensus 310 ~ 310 (818)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=126.04 Aligned_cols=81 Identities=25% Similarity=0.452 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--------~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
.+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46799999999999999999999999999999874 2277899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=8e-14 Score=128.46 Aligned_cols=84 Identities=17% Similarity=0.381 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457899999999999999999999999999999884 5667999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 96
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=127.43 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=73.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999763 567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 97
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=3.6e-14 Score=122.69 Aligned_cols=77 Identities=27% Similarity=0.458 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
+.+|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999874 467799999999999999999999999999999999999987
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 98
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.3e-14 Score=126.63 Aligned_cols=84 Identities=18% Similarity=0.404 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3457899999999999999999999999999999884 4578999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 003463 225 IPKDNPS 231 (818)
Q Consensus 225 ~pk~~~~ 231 (818)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8876543
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=125.54 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=72.0
Q ss_pred CccceeeecCCCCCCHHHHH----HHhhccCCeEEEEecCC--CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~----~lFs~fG~I~~vr~~g~--srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...+|||+|||..+++++|+ ++|++||.|.+|++... .++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45689999999999999999 99999999999987422 2899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=6.7e-14 Score=126.75 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=73.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCC---ceEEEE
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG---KRIKLE 307 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G---r~L~V~ 307 (818)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34679999999999999999999999999999976 34457999999999999999999999999998 999999
Q ss_pred ecCCCcccc
Q 003463 308 PSRPGGARR 316 (818)
Q Consensus 308 ~a~~~~~r~ 316 (818)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=9.5e-14 Score=126.90 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.2
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcC------CCccCCce
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLN------RSDIAGKR 303 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~Ln------G~~i~Gr~ 303 (818)
...++|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346799999999999999999999999999999763 5678999999999999999999999 99999999
Q ss_pred EEEEecCCCccc
Q 003463 304 IKLEPSRPGGAR 315 (818)
Q Consensus 304 L~V~~a~~~~~r 315 (818)
|+|.+++++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987644
No 102
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=123.63 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC-----C-CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g-----~-srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
..++|||+|||.++|+++|+++|++||.|..+++.. . .+|+|||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999999997621 2 6899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
++...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 103
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=5.8e-14 Score=125.35 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.8
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
.++|||+|||..+++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 358999999999999999999999999999976 356689999999999999999999999999999999999998
Q ss_pred Cccc
Q 003463 312 GGAR 315 (818)
Q Consensus 312 ~~~r 315 (818)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 104
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=3.7e-14 Score=129.94 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=80.9
Q ss_pred ccccccccccCCCCCCCCCCCCccceeeecCCCC-CCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHH
Q 003463 215 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 215 ~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
.|.+|.+..+.+..... .....++|||+|||.. +++++|+++|++||.|..|++ +++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~~-~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND-PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSCC-CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCCC-CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 45667777665443322 2334579999999999 999999999999999999998 589999999999999999999
Q ss_pred cCCCccCCceEEEEecCCCc
Q 003463 294 LNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 294 LnG~~i~Gr~L~V~~a~~~~ 313 (818)
|+|..+.|++|+|++++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998654
No 105
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=9.1e-14 Score=129.07 Aligned_cols=79 Identities=28% Similarity=0.448 Sum_probs=72.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4568999999999999999999999999999976 455689999999999999999999999999999999999987
Q ss_pred Ccc
Q 003463 312 GGA 314 (818)
Q Consensus 312 ~~~ 314 (818)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 106
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=127.56 Aligned_cols=81 Identities=22% Similarity=0.481 Sum_probs=73.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999763 446899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887643
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.7e-14 Score=126.86 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhc--Cccccccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFS 224 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~V~~a 224 (818)
....++++|||+|||.++++++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 3445789999999999999999999999999999998643 48999999999999999999875 57799999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.8e-14 Score=128.30 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=71.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCC--ccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~--~i~Gr~L~V~~a~~~~ 313 (818)
..++|||+|||+++++++|+++|++||.|.+|++.. .||||||+|.+.++|.+|++.|++. .+.|++|+|+|++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 457999999999999999999999999999998754 4899999999999999999998765 5999999999998765
Q ss_pred cc
Q 003463 314 AR 315 (818)
Q Consensus 314 ~r 315 (818)
.+
T Consensus 93 ~~ 94 (104)
T 1wex_A 93 IT 94 (104)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=124.80 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC---CCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g---~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....++|||+|||.++++++|+++|++||.|..|++.. .+++||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567999999999999999999999999999998742 358999999999999999999999999999999999998
Q ss_pred CCccc
Q 003463 311 PGGAR 315 (818)
Q Consensus 311 ~~~~r 315 (818)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 87643
No 110
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=128.27 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=72.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 345789999999999999999999999999999763 556899999999999999999999999999999999999
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8765
No 111
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=1.4e-14 Score=164.20 Aligned_cols=145 Identities=24% Similarity=0.356 Sum_probs=103.4
Q ss_pred HHHHhhcCCCEEEEEe-------CCCcccEE-----EEEEccHHHHHHHHHHhcCcccccc-----------cc--cccc
Q 003463 169 LRALFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-----------KL--DIHF 223 (818)
Q Consensus 169 Lr~lFs~fG~I~~v~~-------~~ksrG~A-----FV~F~d~e~A~~Al~~Lng~~l~gr-----------~L--~V~~ 223 (818)
|..+|..+|+|..|.. ..+..+|+ |+.|.+..++..++..++......+ .+ .+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999887731 11233444 7778776655544433222221111 00 1111
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 224 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 224 a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
..+............+|||+|||+.+|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 2222222223334579999999999999999999999999999976 45679999999999999999999999999
Q ss_pred cCCceEEEEecCCCc
Q 003463 299 IAGKRIKLEPSRPGG 313 (818)
Q Consensus 299 i~Gr~L~V~~a~~~~ 313 (818)
|.|+.|.|.++++..
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=5.8e-14 Score=128.35 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=73.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..|||..+.|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45578999999999999999999999999999976 3456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 877644
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=126.49 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=71.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEec--------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~--------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
..++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 35689999999999999999999999999998763 2567899999999999999999999999999999999
Q ss_pred ecCCCcc
Q 003463 308 PSRPGGA 314 (818)
Q Consensus 308 ~a~~~~~ 314 (818)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988654
No 114
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=1e-13 Score=125.58 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccc---ccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLDI 221 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g---r~L~V 221 (818)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.+ +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999884 45679999999999999999999999999998 99999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876643
No 115
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=4.9e-14 Score=122.43 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999984 456899999999999999999999999999999999998
Q ss_pred cC
Q 003463 224 SI 225 (818)
Q Consensus 224 a~ 225 (818)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 116
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=5.5e-14 Score=129.70 Aligned_cols=84 Identities=15% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999998874 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999877653
No 117
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.1e-14 Score=125.56 Aligned_cols=83 Identities=18% Similarity=0.429 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4467899999999999999999999999999999984 2346899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 876543
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=125.72 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=71.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
....+|||+|||..+++++|+++|++||.|....+++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3457999999999999999999999999996333456789999999999999999999999999999999999998865
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9.3e-14 Score=122.52 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|.++.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999864 7999999999999999999999999999999999998766
Q ss_pred CC
Q 003463 229 NP 230 (818)
Q Consensus 229 ~~ 230 (818)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=132.34 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=72.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC--CccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~~~ 313 (818)
..++|||+|||+++|+++|+++|++||.|++|++.. .+|||||+|.+.++|.+|++.|++ ..|.|++|+|.|++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999998753 489999999999999999999984 68999999999998876
Q ss_pred ccc
Q 003463 314 ARR 316 (818)
Q Consensus 314 ~r~ 316 (818)
.+.
T Consensus 109 ~~~ 111 (119)
T 2ad9_A 109 LKT 111 (119)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 121
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=124.41 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456799999999999999999999999999999985 234689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876643
No 122
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.7e-14 Score=126.56 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=73.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999976 3457899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887644
No 123
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.5e-14 Score=128.65 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCc--ccccccccccccC
Q 003463 149 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFSI 225 (818)
Q Consensus 149 e~~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~--~l~gr~L~V~~a~ 225 (818)
..++++|||+|||+ ++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.|++. .|.|++|+|.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 45789999999999 99999999999999999999864 45799999999999999999999865 4999999999998
Q ss_pred CCC
Q 003463 226 PKD 228 (818)
Q Consensus 226 pk~ 228 (818)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 124
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1e-13 Score=126.63 Aligned_cols=83 Identities=20% Similarity=0.460 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhc------Cccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLRR 216 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Ln------g~~l~g 216 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4457899999999999999999999999999999984 35789999999999999999999999 999999
Q ss_pred ccccccccCCCCCC
Q 003463 217 RKLDIHFSIPKDNP 230 (818)
Q Consensus 217 r~L~V~~a~pk~~~ 230 (818)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999877543
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9e-14 Score=123.09 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..+.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998865
Q ss_pred c
Q 003463 314 A 314 (818)
Q Consensus 314 ~ 314 (818)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 126
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=127.77 Aligned_cols=81 Identities=17% Similarity=0.448 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...++++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999984 36789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.6e-14 Score=122.42 Aligned_cols=78 Identities=28% Similarity=0.409 Sum_probs=72.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
.....+|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998765
Q ss_pred c
Q 003463 314 A 314 (818)
Q Consensus 314 ~ 314 (818)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 128
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=1.6e-14 Score=127.73 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=65.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG--~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
.+|||+|||.++|+++|+++|++|| .|.++++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8988864 56778999999999999999999999999999999999998
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=126.61 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
.....+|||+|||..+++++|+++|++||.|..++.++.++|||||+|.+.++|.+|++.|+|..+.|++|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34567999999999999999999999999998887777889999999999999999999999999999999999998876
Q ss_pred cc
Q 003463 314 AR 315 (818)
Q Consensus 314 ~r 315 (818)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.2e-14 Score=128.27 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=69.9
Q ss_pred CccceeeecCCC-CCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCC--ccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~-~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~--~i~Gr~L~V~~a~~~ 312 (818)
...+|||+|||+ ++|++||+++|++||.|.+|++. ..++||||+|.+.++|.+|++.|++. .|.|++|+|.+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 457899999999 99999999999999999999985 35799999999999999999999865 599999999999864
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=9.2e-14 Score=126.08 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCcc---CCceEE
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIK 305 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i---~Gr~L~ 305 (818)
.....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345679999999999999999999999999999976 355789999999999999999999999988 899999
Q ss_pred EEecCCCccc
Q 003463 306 LEPSRPGGAR 315 (818)
Q Consensus 306 V~~a~~~~~r 315 (818)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887643
No 132
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=5.9e-14 Score=123.89 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=72.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
...+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999999876 4456899999999999999999999999999999999999886
Q ss_pred cc
Q 003463 313 GA 314 (818)
Q Consensus 313 ~~ 314 (818)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=5.1e-14 Score=129.20 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.8
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
.....++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34566799999999999999999999999999999986 899999999999999999999999999999999999887
Q ss_pred ccc
Q 003463 313 GAR 315 (818)
Q Consensus 313 ~~r 315 (818)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=125.58 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=72.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEE-Ee-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v-r~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
..++|||+|||..+++++|+++|++||.|..+ ++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999887 65 3456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887644
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=124.88 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhc-CCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcc-ccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~-fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~-l~gr~L~V~ 222 (818)
..+.++|||+|||.++++++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456799999999999999999999999 999999885 56789999999999999999999999999 999999999
Q ss_pred ccCCCCCC
Q 003463 223 FSIPKDNP 230 (818)
Q Consensus 223 ~a~pk~~~ 230 (818)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 136
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.3e-14 Score=124.23 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccc--cccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~p 226 (818)
..++++|||+|||.++++++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|++..+. |++|+|.++.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 35679999999999999999999999999999998654 3899999999999999999999999999 99999999987
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 137
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=128.02 Aligned_cols=81 Identities=22% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999874 46789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 138
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=125.03 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=72.2
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....+|||+|||.++++++|+++|++|| |..|++. +.++|||||+|.+.++|++|+ .|++..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 9999763 567899999999999999999 9999999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 139
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=131.80 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
.....++|||+|||.++++++|+++|+.||.|++|++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3345679999999999999999999999999999976 34568999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 003463 308 PSRPGGAR 315 (818)
Q Consensus 308 ~a~~~~~r 315 (818)
+++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 140
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.6e-14 Score=126.14 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999985 456789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 141
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=125.48 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE-Ee-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v-~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
.+.++|||+|||.++++++|+++|++||.|..+ ++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999877 63 456799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876643
No 142
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=125.41 Aligned_cols=83 Identities=16% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
+....+.++|||+|||.++++++|+++|++|| |..|.+. ++++|||||+|.+.++|++|+ .|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456779999999999999999999999999 9999842 678999999999999999999 899999999999
Q ss_pred cccccCCCCCC
Q 003463 220 DIHFSIPKDNP 230 (818)
Q Consensus 220 ~V~~a~pk~~~ 230 (818)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876643
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9e-14 Score=123.11 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
....+.++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678999999999999999999999999999999874 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 003463 227 KDNP 230 (818)
Q Consensus 227 k~~~ 230 (818)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 144
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=8.9e-14 Score=127.52 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=73.0
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|+|..+.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999875 345689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003463 309 SRPGG 313 (818)
Q Consensus 309 a~~~~ 313 (818)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=7.3e-14 Score=124.05 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=70.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...++|||+|||+.+++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356799999999999999999999999999999763 3457899999999999999999999999999999999987
Q ss_pred C
Q 003463 311 P 311 (818)
Q Consensus 311 ~ 311 (818)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 146
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.5e-14 Score=126.63 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 356899999999999999999999999999999984 356899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876644
No 147
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.7e-14 Score=126.92 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=73.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
..++|||+|||..+++++|+++|++||.|..|++... +|||||+|.+.++|.+|++.|+|..+.|++|+|.|++++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 4579999999999999999999999999999998654 899999999999999999999999999999999999887643
No 148
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.1e-13 Score=131.05 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=73.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||.++++++|+++|++||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999976 3567899999999999999999999999999999999999
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8765
No 149
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=9.1e-14 Score=126.10 Aligned_cols=83 Identities=24% Similarity=0.475 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccc---cccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRK 218 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l---~gr~ 218 (818)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999999999999999999999999984 466899999999999999999999999988 8999
Q ss_pred ccccccCCCCC
Q 003463 219 LDIHFSIPKDN 229 (818)
Q Consensus 219 L~V~~a~pk~~ 229 (818)
|+|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 150
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.3e-13 Score=123.96 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCccceeeecCCC-CCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 235 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 235 ~~~~tL~V~NLp~-~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 99999999999999999999984 8999999999999999999999999999999999998754
No 151
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.2e-14 Score=126.70 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
..++|||+|||.++++++|+++|++||.|.++++. .++|||||+|.+.++|.+|+..|||..+.|++|+|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35789999999999999999999999999999986 67899999999999999999999999999999999999864
No 152
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=1.2e-13 Score=125.07 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=72.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
..++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|+.|+|++++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45789999999999999999999999999999986 679999999999999999999999999999999999987654
Q ss_pred c
Q 003463 316 R 316 (818)
Q Consensus 316 ~ 316 (818)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2e-13 Score=122.46 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=71.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhcc--CCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~f--G~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
...++|||+|||..+|+++|+++|++| |.|..|++. ++||||+|.+.++|.+|++.|||..+.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 356799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred cc
Q 003463 313 GA 314 (818)
Q Consensus 313 ~~ 314 (818)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 154
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.93 Aligned_cols=77 Identities=25% Similarity=0.466 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999985 356789999999999999999999999999999999998
Q ss_pred cC
Q 003463 224 SI 225 (818)
Q Consensus 224 a~ 225 (818)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 155
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.9e-14 Score=123.70 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999884 36789999999999999999999999999999999999
Q ss_pred ccCC
Q 003463 223 FSIP 226 (818)
Q Consensus 223 ~a~p 226 (818)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 156
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=124.38 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...++|||+|||..+|+++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 355799999999999999999999999999999886 458999999999999999999999999999999999998865
No 157
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=8e-14 Score=123.80 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
+....+.++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 334567799999999999999999999999999999884 3567899999999999999999999999999999999
Q ss_pred cccC
Q 003463 222 HFSI 225 (818)
Q Consensus 222 ~~a~ 225 (818)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9875
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.48 E-value=1.2e-13 Score=133.61 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...+.++|||+|||+++++++|+++|++||.|..|++...++|||||+|.+.++|++|++.|+|..|.|++|+|.++.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34567999999999999999999999999999999987668999999999999999999999999999999999999875
Q ss_pred C
Q 003463 228 D 228 (818)
Q Consensus 228 ~ 228 (818)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.7e-14 Score=128.00 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=73.3
Q ss_pred CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec---CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 232 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 232 ~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~---g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
......++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|+|..+.|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344456799999999999999999999999999999763 34589999999999999999999999999999999999
Q ss_pred cCCC
Q 003463 309 SRPG 312 (818)
Q Consensus 309 a~~~ 312 (818)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 160
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=120.25 Aligned_cols=76 Identities=30% Similarity=0.464 Sum_probs=70.3
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHc-CCCccCCceEEEEecC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSR 310 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~L-nG~~i~Gr~L~V~~a~ 310 (818)
....++|||+|||..+++++|+++|++||.|..|++.. ++|||||+|.+.++|.+|++.| +|..+.|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999998863 5899999999999999999999 9999999999999985
No 161
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-14 Score=127.60 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCC--EEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCc----ccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGD--IRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNK----PLRRR 217 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~--I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~----~l~gr 217 (818)
+..-.||||+|||+++|+++|+++|++||. |.+|+ .+++++|||||+|.+.++|++|++.|++. .|.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 45665 25789999999999999999999999997 48899
Q ss_pred cccccccCC
Q 003463 218 KLDIHFSIP 226 (818)
Q Consensus 218 ~L~V~~a~p 226 (818)
+|.|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=7.4e-14 Score=132.52 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCce-EEEEEcCHHHHHHHHHHcCCCccCC--ceEEEEecCCCcc
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGGA 314 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~-aFVeF~d~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~~~~ 314 (818)
-.|||+||++.+|+++|+++|++||.|.+|++..+.+|+ |||+|.+.++|.+|++.|||..|.| ++|+|+|++++.-
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 468899999999999999999999999999886666787 9999999999999999999999998 9999999998753
No 163
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=127.42 Aligned_cols=80 Identities=13% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCccceeeecCCCCCCHHHHH---HHhhccCCeEEEEecC--------CCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~---~lFs~fG~I~~vr~~g--------~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
.....+|||+|||+++++++|+ ++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999997632 3458999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003463 303 RIKLEPSRPGG 313 (818)
Q Consensus 303 ~L~V~~a~~~~ 313 (818)
+|+|++++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 164
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=130.79 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.5
Q ss_pred CccceeeecCCCCCCHHHHH----HHhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~----~lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...+|||+|||+.+++++|+ ++|++||.|.+|.+ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45689999999999999876 69999999999876 4578999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++...
T Consensus 108 ~~~~~~ 113 (127)
T 2a3j_A 108 ETPQSQ 113 (127)
T ss_dssp CCCCHH
T ss_pred cCcchh
Confidence 987643
No 165
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5.2e-14 Score=125.41 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 34567999999999999999999999999999888778889999999999999999999999999999999999999876
Q ss_pred CC
Q 003463 228 DN 229 (818)
Q Consensus 228 ~~ 229 (818)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 166
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=125.54 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCC-----ceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G-----r~L~V~~a~ 310 (818)
...+|||+|||+++|+++|+++|++||.|..|++... +||||+|.+.++|++||+.|||..|.| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4579999999999999999999999999999998644 999999999999999999999999999 999999998
Q ss_pred CCcc
Q 003463 311 PGGA 314 (818)
Q Consensus 311 ~~~~ 314 (818)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 167
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.3e-14 Score=125.59 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=73.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhc-cCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCc-cCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD-IAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~-fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~-i~Gr~L~V~~a 309 (818)
...+|||+|||.++|+++|+++|++ ||.|..|++ ++.++|||||+|.+.++|.+|++.|+|.. +.|++|+|+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4579999999999999999999999 999999976 45578999999999999999999999999 99999999999
Q ss_pred CCCcccc
Q 003463 310 RPGGARR 316 (818)
Q Consensus 310 ~~~~~r~ 316 (818)
+++..++
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8876543
No 168
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.1e-13 Score=128.05 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=70.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3455799999999999999999999999999999763 45689999999999999999999999999999999999
Q ss_pred cC
Q 003463 309 SR 310 (818)
Q Consensus 309 a~ 310 (818)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 169
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=1.2e-13 Score=129.40 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34579999999999999999999999999999976 4556899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 170
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=1.2e-13 Score=130.93 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999984 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 003463 222 HFSIPKD 228 (818)
Q Consensus 222 ~~a~pk~ 228 (818)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 171
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=124.21 Aligned_cols=80 Identities=11% Similarity=0.352 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE-EEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccc----
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK---- 218 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~-~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~---- 218 (818)
..++++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999998 8873 5678899999999999999999999999999999
Q ss_pred ccccccCCCC
Q 003463 219 LDIHFSIPKD 228 (818)
Q Consensus 219 L~V~~a~pk~ 228 (818)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998654
No 172
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=123.53 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.5
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEE--------EEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~--------vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
....+|||+|||.++++++|+++|++||.|.. +++ ++.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35679999999999999999999999999998 764 35568999999999999999999999999999
Q ss_pred ceEEEEecC
Q 003463 302 KRIKLEPSR 310 (818)
Q Consensus 302 r~L~V~~a~ 310 (818)
++|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 173
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=123.95 Aligned_cols=80 Identities=30% Similarity=0.523 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|||.++++++|+++|++||.|..|++. +.+|||||+|.+.++|++|++.|++..|.|++|+|.++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3567899999999999999999999999999999864 468999999999999999999999999999999999998765
Q ss_pred C
Q 003463 229 N 229 (818)
Q Consensus 229 ~ 229 (818)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=121.03 Aligned_cols=78 Identities=12% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..++|||+|||.++++++|+++|++||.|..+.+. ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999841 238999999999999999999999999999999999998
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 175
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=119.58 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHh-cCcccccccccccccC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 225 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~L-ng~~l~gr~L~V~~a~ 225 (818)
...+.++|||+|||.++++++|+++|++||.|..|++. +++|||||+|.+.++|++|++.| ++..+.|++|+|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 44567999999999999999999999999999999864 36899999999999999999998 9999999999999873
No 176
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.3e-14 Score=125.36 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
..++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|++|++.|++..+.|+.|+|.++.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46899999999999999999999999999999864 67999999999999999999999999999999999998763
No 177
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=124.65 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=72.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
....++|||+|||.++|+++|+++|++||.|.-++. ++..+|||||+|.+.++|++|++.|||..|.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345679999999999999999999999999854433 5667999999999999999999999999999999999999887
Q ss_pred cc
Q 003463 313 GA 314 (818)
Q Consensus 313 ~~ 314 (818)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 178
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=126.18 Aligned_cols=77 Identities=27% Similarity=0.400 Sum_probs=72.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
.+|||+|||.++|+++|+++|++||.|..|++...++|||||+|.+.++|++|++.|+|..+.|+.|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 37999999999999999999999999999988655789999999999999999999999999999999999988653
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.2e-14 Score=130.30 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999874 567899999999999999999 99999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 180
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=1.1e-13 Score=126.51 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999984 46679999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 181
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=127.37 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356799999999999999999999999999999884 5678899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003463 225 IPKDN 229 (818)
Q Consensus 225 ~pk~~ 229 (818)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 182
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=126.51 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=73.3
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeE--------EEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~--------~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
....++|||+|||..+|+++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 4654 3566899999999999999999999999999
Q ss_pred CceEEEEecCCCccc
Q 003463 301 GKRIKLEPSRPGGAR 315 (818)
Q Consensus 301 Gr~L~V~~a~~~~~r 315 (818)
|++|+|++++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999887643
No 183
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=127.24 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=71.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
..++|||+|||..+++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..+.|++|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 45699999999999999999999999999999985 47899999999999999999999999999999999999754
No 184
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=124.49 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
...+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 345789999999999999999999999999995444 2567899999999999999999999999999999999999987
Q ss_pred CCCC
Q 003463 227 KDNP 230 (818)
Q Consensus 227 k~~~ 230 (818)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 185
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.46 E-value=3.8e-14 Score=125.27 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
.+|||+|||.++++++|+++|++|| .|.++++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8888773 67889999999999999999999999999999999999998
Q ss_pred CCCC
Q 003463 226 PKDN 229 (818)
Q Consensus 226 pk~~ 229 (818)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 186
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=125.33 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
.+...++|||+|||..+|+++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3445679999999999999999999999999999976 355789999999999999999999998 8999999999
Q ss_pred ecCCCc
Q 003463 308 PSRPGG 313 (818)
Q Consensus 308 ~a~~~~ 313 (818)
+++++.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 998754
No 187
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=124.47 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999874 467889999999999999999998 999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 188
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.46 E-value=2.1e-13 Score=123.41 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|.|+.|.|.++.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 3467999999999999999999999999999999864 6799999999999999999999999999999999998765
Q ss_pred CC
Q 003463 229 NP 230 (818)
Q Consensus 229 ~~ 230 (818)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 189
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=130.05 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr----~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
..++++|||+|||+++++++|+ ++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4568999999999999999876 69999999999885 46789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 190
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=1.5e-13 Score=120.33 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|+ .|||..+.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999865 4566899999999999999999 899999999999999998
Q ss_pred CC
Q 003463 311 PG 312 (818)
Q Consensus 311 ~~ 312 (818)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 191
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.7e-13 Score=125.21 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
..+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34567899999999999999999999999999999984 466899999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999776544
No 192
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=8.5e-14 Score=122.83 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999986 348999999999999999999999999999999999987
No 193
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.5e-13 Score=127.25 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999985 3567999999999999999999999999999999999
Q ss_pred cccC
Q 003463 222 HFSI 225 (818)
Q Consensus 222 ~~a~ 225 (818)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 194
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=122.91 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=71.2
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||.++++++|+++|++|| |..|++ ++.++|||||+|.+.++|++|+ .|||..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567999999999999999999999997 999876 3556899999999999999999 89999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887643
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.7e-13 Score=128.34 Aligned_cols=82 Identities=17% Similarity=0.439 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999984 56779999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003463 223 FSIPKDN 229 (818)
Q Consensus 223 ~a~pk~~ 229 (818)
++.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976554
No 196
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=126.23 Aligned_cols=81 Identities=28% Similarity=0.357 Sum_probs=72.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCe----EEEE-ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I----~~vr-~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||.++|+++|+++|++||.| ..++ .++.++|||||+|.+.++|++|++.|+|..+.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 345799999999999999999999999998 4554 36778999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 887644
No 197
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=123.52 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
....++|||+|||.++++++|+++|++||.|....+.++++|||||+|.+.++|++|++.|++..|.|+.|+|.++.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34578999999999999999999999999986322456889999999999999999999999999999999999998754
No 198
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.1e-14 Score=123.54 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=70.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCC-eEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC-CccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-SDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~-I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG-~~i~Gr~L~V~~a~~~~ 313 (818)
..++|||+|||.++|+++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||| ..+.|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4578999999999999999999999999 665655 3589999999999999999999999 99999999999998876
Q ss_pred cc
Q 003463 314 AR 315 (818)
Q Consensus 314 ~r 315 (818)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 199
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.6e-13 Score=123.75 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456899999999999999999999999999998874 4567899999999999999999999999999999999998
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9e-14 Score=125.55 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=73.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4579999999999999999999999999999875 34568999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003463 311 PGGARR 316 (818)
Q Consensus 311 ~~~~r~ 316 (818)
++..+.
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 876543
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=4.5e-14 Score=127.54 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=71.0
Q ss_pred ccceeeecCCC------CCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCC-ceE
Q 003463 237 QGTLVVFNLDP------SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRI 304 (818)
Q Consensus 237 ~~tL~V~NLp~------~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G-r~L 304 (818)
.++|||+|||. ++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999999999999999976 36789999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 003463 305 KLEPSRPG 312 (818)
Q Consensus 305 ~V~~a~~~ 312 (818)
+|.++++.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=122.88 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445789999999999999999999999997 998874 4678999999999999999999 79999999999999
Q ss_pred cccCCCCCC
Q 003463 222 HFSIPKDNP 230 (818)
Q Consensus 222 ~~a~pk~~~ 230 (818)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 203
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=2e-13 Score=132.83 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=74.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...+|||+|||..+|+++|+++|++||.|..|++ ++.+++||||+|.+.++|++||+.||+..|.|++|+|++++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999987 45578999999999999999999999999999999999998
Q ss_pred CCcccc
Q 003463 311 PGGARR 316 (818)
Q Consensus 311 ~~~~r~ 316 (818)
+...++
T Consensus 118 ~~~~~~ 123 (156)
T 1h2v_Z 118 GFKEGR 123 (156)
T ss_dssp CCCTTC
T ss_pred CCCCcC
Confidence 865443
No 204
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=124.51 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...++|||+|||..+++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34579999999999999999999999999999875 33457899999999999999999999999999999999998
Q ss_pred CCcc
Q 003463 311 PGGA 314 (818)
Q Consensus 311 ~~~~ 314 (818)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=120.20 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999983 4677999999999999999999999999999999998875
Q ss_pred C
Q 003463 225 I 225 (818)
Q Consensus 225 ~ 225 (818)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-13 Score=123.38 Aligned_cols=77 Identities=29% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCccceeeecCCC-CCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 235 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 235 ~~~~tL~V~NLp~-~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|+|..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3467999999998 99999999999999999999984 7999999999999999999999999999999999998765
Q ss_pred c
Q 003463 314 A 314 (818)
Q Consensus 314 ~ 314 (818)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 207
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=122.81 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=73.5
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEE--ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr--~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
.....++|||+|||.++|+++|+++|+.|+.|.-++ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 445668999999999999999999999998776664 356678999999999999999999999999999999999999
Q ss_pred CCccc
Q 003463 311 PGGAR 315 (818)
Q Consensus 311 ~~~~r 315 (818)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87643
No 208
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.4e-13 Score=124.22 Aligned_cols=80 Identities=14% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
.+.++|||+|||.++++++|+++|++||.|..|++... +|||||+|.+.++|++|++.|++..|.|+.|+|.++.++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45789999999999999999999999999999986443 89999999999999999999999999999999999987654
Q ss_pred C
Q 003463 230 P 230 (818)
Q Consensus 230 ~ 230 (818)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 209
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=123.63 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeE-EEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCce----EE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR----IK 305 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~-~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~----L~ 305 (818)
..++|||+|||..+++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 8865 4556799999999999999999999999999999 99
Q ss_pred EEecCCCc
Q 003463 306 LEPSRPGG 313 (818)
Q Consensus 306 V~~a~~~~ 313 (818)
|.|+++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998765
No 210
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=123.37 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||..+++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3457899999999999999999999999986442 34567899999999999999999999999999999999999
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
+.+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 211
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=3.3e-13 Score=123.36 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccc-----ccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g-----r~L~V~~ 223 (818)
....++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++||+.|++..|.| +.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 356789999999999999999999999999999986443 999999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 003463 224 SIPKDN 229 (818)
Q Consensus 224 a~pk~~ 229 (818)
+.++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987654
No 212
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=7.5e-14 Score=133.27 Aligned_cols=85 Identities=28% Similarity=0.479 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
+....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999984 567899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 003463 221 IHFSIPKDNP 230 (818)
Q Consensus 221 V~~a~pk~~~ 230 (818)
|.++.++..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 213
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.3e-13 Score=122.94 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=72.7
Q ss_pred CccceeeecCCCCCCHHHHH----HHhhccCCeEEEEec--CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~----~lFs~fG~I~~vr~~--g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
..++|||+|||.++++++|+ ++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999 999999999999874 356899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003463 310 RPGGA 314 (818)
Q Consensus 310 ~~~~~ 314 (818)
+++..
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 98764
No 214
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=119.71 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|+|.++.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3567899999999999999999999999999999874 5699999999999999999999999999999999998765
Q ss_pred C
Q 003463 229 N 229 (818)
Q Consensus 229 ~ 229 (818)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=122.56 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 214 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l 214 (818)
...+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999988 663 467899999999999999999999999999
Q ss_pred ccccccccccC
Q 003463 215 RRRKLDIHFSI 225 (818)
Q Consensus 215 ~gr~L~V~~a~ 225 (818)
.|+.|+|.++.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 216
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.5e-13 Score=122.93 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 149 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 149 e~~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
..++++|||+|||. ++++++|+++|++||.|..|.+ .+|||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 35789999999998 9999999999999999999987 4899999999999999999999999999999999999776
Q ss_pred CCC
Q 003463 228 DNP 230 (818)
Q Consensus 228 ~~~ 230 (818)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 217
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=123.78 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEeC------CCcccEEEEEEccHHHHHHHHHHhc--Cccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 220 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~-I~~v~~~------~ksrG~AFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~ 220 (818)
.+.++|||+|||.++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999853 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCCC
Q 003463 221 IHFSIPKDNPS 231 (818)
Q Consensus 221 V~~a~pk~~~~ 231 (818)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 218
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=130.29 Aligned_cols=84 Identities=19% Similarity=0.374 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--EEe-----CCCcccEEEEEEccHHHHHHHHHHhcCc----cc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PL 214 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~--v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~----~l 214 (818)
+....+.++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|++|++.|++. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567899999999999999999999999999966 662 678999999999999 999999999999 99
Q ss_pred ccccccccccCCCCCC
Q 003463 215 RRRKLDIHFSIPKDNP 230 (818)
Q Consensus 215 ~gr~L~V~~a~pk~~~ 230 (818)
.|+.|+|.++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999886543
No 219
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.44 E-value=2.7e-13 Score=129.17 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|+.||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999874 46779999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003463 223 FSIPKDNP 230 (818)
Q Consensus 223 ~a~pk~~~ 230 (818)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 220
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=126.57 Aligned_cols=80 Identities=23% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...+.++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4456799999999999999999999999999999885 3457999999999999999999999999999999999999
Q ss_pred CCC
Q 003463 225 IPK 227 (818)
Q Consensus 225 ~pk 227 (818)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 221
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.44 E-value=5.9e-14 Score=126.75 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccc-c
Q 003463 150 HPSRTLFVRNINS------NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-R 217 (818)
Q Consensus 150 ~~srtLfV~NLP~------~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g-r 217 (818)
..+++|||+|||. ++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999984 47899999999999999999999999999999 9
Q ss_pred cccccccCCC
Q 003463 218 KLDIHFSIPK 227 (818)
Q Consensus 218 ~L~V~~a~pk 227 (818)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998654
No 222
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=128.09 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=70.1
Q ss_pred CccceeeecCCCC-CCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC--CccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG--~~i~Gr~L~V~~a~~~ 312 (818)
..++|||+|||++ +++++|+++|++||.|.+|++. +.+|||||+|.+.++|.+|++.|++ ..|.|++|+|.+++.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 4579999999998 9999999999999999999985 5689999999999999999998864 5699999999999876
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 103 ~ 103 (112)
T 1x4f_A 103 K 103 (112)
T ss_dssp S
T ss_pred c
Confidence 5
No 223
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=122.06 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr----~lFs~fG~I~~v~~~--~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
+.++|||+|||.++++++|+ ++|++||.|..|++. ...+|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 999999999999853 223899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.+...+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 224
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=1.1e-13 Score=123.27 Aligned_cols=80 Identities=24% Similarity=0.597 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr----~lFs~fG~I~~v~~~--~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
..++++|||+|||.++++++|+ ++|++||.|..|.+. ++++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 999999999999853 4678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
++.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998754
No 225
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=125.61 Aligned_cols=83 Identities=22% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE--------EEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 214 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~--------~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l 214 (818)
...+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 446789999999999999999999999999998 4663 467799999999999999999999999999
Q ss_pred ccccccccccCCCCCC
Q 003463 215 RRRKLDIHFSIPKDNP 230 (818)
Q Consensus 215 ~gr~L~V~~a~pk~~~ 230 (818)
.|+.|+|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 226
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=3.9e-14 Score=132.36 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=70.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3479999999999999999999999999999875 4567899999999999999999 799999999999999998
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 227
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.4e-14 Score=126.52 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999988874 5677999999999999999999999999999999999999
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8654
No 228
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=123.70 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=70.5
Q ss_pred CccceeeecCCCCC------CHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc-eEE
Q 003463 236 NQGTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIK 305 (818)
Q Consensus 236 ~~~tL~V~NLp~~v------teedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~L~ 305 (818)
..++|||+|||..+ |+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..|||..+.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45789999999999 78999999999999999976 456789999999999999999999999999998 999
Q ss_pred EEecCCC
Q 003463 306 LEPSRPG 312 (818)
Q Consensus 306 V~~a~~~ 312 (818)
|.++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998754
No 229
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.44 E-value=3e-13 Score=121.51 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 148 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 148 ~e~~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
...++++|||+|||. ++++++|+++|++||.|..+++ .+|||||+|.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345689999999998 9999999999999999999987 489999999999999999999999999999999999876
Q ss_pred C
Q 003463 227 K 227 (818)
Q Consensus 227 k 227 (818)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 230
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=124.59 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe------cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~------~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...++|||+|||.++++++|+++|++|| |.+|++ ++.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3557999999999999999999999999 999976 3556899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 003463 309 SRPGG 313 (818)
Q Consensus 309 a~~~~ 313 (818)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 231
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.9e-13 Score=119.65 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=70.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
...+|||+|| ++|+++|+++|++||.|..|++ +.++|||||+|.+.++|.+|++.|+|..+.|++|+|++++++..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 4579999996 8999999999999999999998 46789999999999999999999999999999999999988654
No 232
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.4e-13 Score=119.71 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~f--G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..+.++|||+|||.++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3567999999999999999999999999 99999875 478999999999999999999999999999999999987
Q ss_pred CCC
Q 003463 227 KDN 229 (818)
Q Consensus 227 k~~ 229 (818)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 233
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=9.4e-14 Score=128.63 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC--cccccccccccccC
Q 003463 149 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 225 (818)
Q Consensus 149 e~~srtLfV~NLP~~-vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~~a~ 225 (818)
..++++|||+|||++ +++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++ ..|.|++|+|.++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 457899999999998 999999999999999999986 35789999999999999999998865 56999999999997
Q ss_pred CCCC
Q 003463 226 PKDN 229 (818)
Q Consensus 226 pk~~ 229 (818)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6554
No 234
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.6e-13 Score=123.24 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....+|||+|||+.+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34579999999999999999999999999999875 34568899999999999999999999999999999999985
No 235
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=126.00 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCE----EEEE-eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I----~~v~-~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..++++|||+|||.++|+++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999998 4444 4788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.7e-13 Score=123.20 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999999874 567899999999999999999999999999999999998
Q ss_pred cC
Q 003463 224 SI 225 (818)
Q Consensus 224 a~ 225 (818)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 237
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=2e-13 Score=134.31 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=70.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-CCCCceEEEEEcCHHHHHHHHHHcCCCccCC--ceEEEEecCCCc
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 313 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~~~ 313 (818)
-.+|||+||++.+|+++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3579999999999999999999999999999874 4457899999999999999999999999965 999999999875
No 238
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=1.7e-13 Score=125.78 Aligned_cols=79 Identities=24% Similarity=0.494 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..+.+.++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 345678999999999999999999999999999999865 89999999999999999999999999999999999987
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 239
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=6.4e-13 Score=124.26 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..+.|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34579999999999999999999999999999976 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=122.75 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccc-
Q 003463 148 GEHPSRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 217 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~v------TEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr- 217 (818)
....+++|||+|||.++ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 78999999999999999985 567899999999999999999999999999998
Q ss_pred cccccccCCC
Q 003463 218 KLDIHFSIPK 227 (818)
Q Consensus 218 ~L~V~~a~pk 227 (818)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 241
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=123.74 Aligned_cols=78 Identities=18% Similarity=0.399 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~------~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 999984 4667999999999999999999 799999999999999
Q ss_pred ccCCCC
Q 003463 223 FSIPKD 228 (818)
Q Consensus 223 ~a~pk~ 228 (818)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998653
No 242
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.5e-13 Score=116.66 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
+|||+|||+++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++ |+|..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999975 45678999999999999999998 9999999999999885
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=117.56 Aligned_cols=71 Identities=15% Similarity=0.362 Sum_probs=65.5
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccc-cccc
Q 003463 152 SRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 221 (818)
Q Consensus 152 srtLfV~NLP~~v------TEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr-~L~V 221 (818)
+++|||+|||.++ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999984 567899999999999999999999999999999 8887
Q ss_pred c
Q 003463 222 H 222 (818)
Q Consensus 222 ~ 222 (818)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 244
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.43 E-value=3.4e-13 Score=123.73 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=70.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.+ +..+.|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999976 3567899999999999999999976 5999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887644
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.2e-13 Score=123.06 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=72.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCC-eEEEEec------CCCCceEEEEEcCHHHHHHHHHHcC--CCccCCceEEE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKL 306 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~-I~~vr~~------g~srG~aFVeF~d~e~A~~Ai~~Ln--G~~i~Gr~L~V 306 (818)
..++|||+|||..+|+++|+++|++||. |..|++. +.++|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999764 3678999999999999999999996 58999999999
Q ss_pred EecCCCcc
Q 003463 307 EPSRPGGA 314 (818)
Q Consensus 307 ~~a~~~~~ 314 (818)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988764
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=123.66 Aligned_cols=81 Identities=32% Similarity=0.473 Sum_probs=73.0
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||+.+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++. ++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 445679999999999999999999999999999875 345679999999999999999998 99999999999999
Q ss_pred cCCCccc
Q 003463 309 SRPGGAR 315 (818)
Q Consensus 309 a~~~~~r 315 (818)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887643
No 247
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=122.40 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE--eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~--~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345789999999999999999999999998877776 367789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003463 226 PKDNP 230 (818)
Q Consensus 226 pk~~~ 230 (818)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87643
No 248
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.7e-13 Score=123.51 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=70.3
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....++|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. ++|..+.|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999763 5678999999999999999999 9999999999999987
Q ss_pred CC
Q 003463 310 RP 311 (818)
Q Consensus 310 ~~ 311 (818)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 249
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-13 Score=122.23 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC-cccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~-I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng-~~l~gr~L~V~~a~pk 227 (818)
.+.++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|+|.++.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 46789999999999999999999999999 665554 4689999999999999999999999 9999999999999876
Q ss_pred CCC
Q 003463 228 DNP 230 (818)
Q Consensus 228 ~~~ 230 (818)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.7e-13 Score=118.59 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEE-ec-CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-~~-g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...+|||+|||+.+++++|+++|++||.|..|+ +. ....+.|||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 43 3345569999999999999999999999999999999998874
No 251
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.42 E-value=2.8e-13 Score=118.69 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|++..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999873 5678999999999999999999 899999999999999987
Q ss_pred CC
Q 003463 226 PK 227 (818)
Q Consensus 226 pk 227 (818)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 252
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=126.56 Aligned_cols=77 Identities=13% Similarity=0.283 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...++|||+|||.++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|++..+.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 346899999999999999999999999999999864 58899999999999999999999999999999999998643
No 253
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2e-13 Score=126.08 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...++|||+|||..+|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++. ++..|.|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34579999999999999999999999999999976 345689999999999999999997 999999999999999
Q ss_pred CCCccc
Q 003463 310 RPGGAR 315 (818)
Q Consensus 310 ~~~~~r 315 (818)
+++..+
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887643
No 254
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.42 E-value=1.6e-13 Score=126.94 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCC-CEEEEEe-CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG-~I~~v~~-~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..|.|+.|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3468999999999999999999999999 8999986 4678999999999999999999999999999999999998643
No 255
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=4.8e-13 Score=130.15 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003463 224 SIPKDN 229 (818)
Q Consensus 224 a~pk~~ 229 (818)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987543
No 256
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=3.5e-13 Score=123.39 Aligned_cols=77 Identities=25% Similarity=0.508 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 149 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 149 e~~srtLfV~NLP~~-vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
..+.++|||+|||.+ +++++|+++|++||.|..|.+ .+|||||+|.+.++|++|++.|++..|.|+.|+|.++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999987 7899999999999999999999999999999999999754
Q ss_pred C
Q 003463 228 D 228 (818)
Q Consensus 228 ~ 228 (818)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 257
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=134.11 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG--~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...+|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346999999999999999999999999 9999875 567789999999999999999999999999999999999
Q ss_pred cCCCc
Q 003463 309 SRPGG 313 (818)
Q Consensus 309 a~~~~ 313 (818)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 258
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=4.1e-13 Score=126.60 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=68.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCce-EEEEEcCHHHHHHHHHHcCCCccCC--ceEEEEecCCCc
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 313 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~-aFVeF~d~e~A~~Ai~~LnG~~i~G--r~L~V~~a~~~~ 313 (818)
.|||+||++.+|+++|+++|++||.|++|++..+ .|+ |||+|.+.++|.+|++.|||..|.| +.|+|+||+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4689999999999999999999999999987544 586 9999999999999999999999988 699999999875
No 259
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=130.05 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEE--EEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCC----ccCCc
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGK 302 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~--vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~----~i~Gr 302 (818)
....++|||+|||+++|+++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 654 567899999999999 999999999999 99999
Q ss_pred eEEEEecCCCc
Q 003463 303 RIKLEPSRPGG 313 (818)
Q Consensus 303 ~L~V~~a~~~~ 313 (818)
+|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 260
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.42 E-value=1.2e-13 Score=122.57 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=67.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999875532 45678999999999999999999999999999999999986
Q ss_pred C
Q 003463 311 P 311 (818)
Q Consensus 311 ~ 311 (818)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.7e-13 Score=122.54 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCcc--------CCc
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI--------AGK 302 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i--------~Gr 302 (818)
....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45579999999999999999999999999999976 345689999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 003463 303 RIKLEPSRPG 312 (818)
Q Consensus 303 ~L~V~~a~~~ 312 (818)
+|+|.|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 262
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=3.5e-13 Score=117.81 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..+.|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999984 47789999999999999999997 58888999999998
Q ss_pred cc
Q 003463 223 FS 224 (818)
Q Consensus 223 ~a 224 (818)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 263
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=4.5e-13 Score=117.09 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=67.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||+.+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ +++..+.|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 35668999999999999999996 688899999999987
Q ss_pred c
Q 003463 309 S 309 (818)
Q Consensus 309 a 309 (818)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 264
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=117.55 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456799999996 9999999999999999999987 578999999999999999999999999999999999999876
Q ss_pred CCC
Q 003463 228 DNP 230 (818)
Q Consensus 228 ~~~ 230 (818)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 265
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-13 Score=120.40 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=69.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||+.+++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3568999999999999999999999999999975 35568999999999999999999999999999999988765
Q ss_pred C
Q 003463 311 P 311 (818)
Q Consensus 311 ~ 311 (818)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 266
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.5e-13 Score=119.48 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=70.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...+|||+|||+++++++|+++|++| .|..+++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 35689999999999999999999999 99999885 788999999999999999999999999999999999987643
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=1.1e-13 Score=121.83 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |.+|+..|||..+.|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999763 567899999999999 99999999999999999999999875
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 268
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=118.13 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=63.8
Q ss_pred cceeeecCCCCC------CHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc-eEEE
Q 003463 238 GTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKL 306 (818)
Q Consensus 238 ~tL~V~NLp~~v------teedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~L~V 306 (818)
++|||+|||..+ ++++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 77999999999999999976 446789999999999999999999999999999 8876
No 269
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.9e-13 Score=121.96 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccc--------cc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------RR 216 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l--------~g 216 (818)
+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456789999999999999999999999999999874 467899999999999999999999999999 46
Q ss_pred ccccccccCCC
Q 003463 217 RKLDIHFSIPK 227 (818)
Q Consensus 217 r~L~V~~a~pk 227 (818)
++|.|.|+.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888888754
No 270
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=132.78 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..++|||+|||+++|+++|+++|++|| .|..|++ +++++|||||+|.+.++|++||+.|+|..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999884 678899999999999999999999999999999999999
Q ss_pred cCCC
Q 003463 224 SIPK 227 (818)
Q Consensus 224 a~pk 227 (818)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 271
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-13 Score=122.95 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=70.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEE----EecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v----r~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
...+|||+|||.++|+++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++ |||..+.|+.|+|.++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 45799999999999999999999999987652 2356789999999999999999998 999999999999999998
Q ss_pred Cccc
Q 003463 312 GGAR 315 (818)
Q Consensus 312 ~~~r 315 (818)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 272
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=121.94 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
....++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999886432 3567899999999999999999999999999999999999
Q ss_pred cCCC
Q 003463 224 SIPK 227 (818)
Q Consensus 224 a~pk 227 (818)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 273
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.5e-13 Score=117.63 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....+|||+|||.++++++|+++|++| .|..|++ ++.++|||||+|.+.++|.+|++ |||..|.|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356799999999999999999999999 8988875 45568899999999999999999 99999999999999998
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 274
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=9e-13 Score=125.13 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
....++|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 355789999999999999999999999999999999998
Q ss_pred c
Q 003463 309 S 309 (818)
Q Consensus 309 a 309 (818)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 275
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.40 E-value=1.4e-13 Score=122.26 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999986443 25678999999999999999999999999999999999987
Q ss_pred C
Q 003463 225 I 225 (818)
Q Consensus 225 ~ 225 (818)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 276
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1e-12 Score=118.59 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999874 47789999999999999999999 4778999999999
Q ss_pred ccCCCCCC
Q 003463 223 FSIPKDNP 230 (818)
Q Consensus 223 ~a~pk~~~ 230 (818)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887654
No 277
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.8e-13 Score=120.13 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE-EEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~-v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
....++|||+|||+++|+++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346789999999999999999999999999987 653 678899999999999999999997 99999999999998
Q ss_pred cCCCC
Q 003463 224 SIPKD 228 (818)
Q Consensus 224 a~pk~ 228 (818)
+.+++
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 278
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.8e-13 Score=122.56 Aligned_cols=77 Identities=12% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
+.+.++|||+|||.++|+++|+++|++||+|..|.+ .++++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999984 36789999999999999999999 8999999999999876
Q ss_pred CC
Q 003463 225 IP 226 (818)
Q Consensus 225 ~p 226 (818)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 279
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=5.3e-13 Score=122.48 Aligned_cols=81 Identities=16% Similarity=0.401 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999985 3678999999999999999999976 599999999999
Q ss_pred ccCCCCC
Q 003463 223 FSIPKDN 229 (818)
Q Consensus 223 ~a~pk~~ 229 (818)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 280
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6e-13 Score=117.41 Aligned_cols=78 Identities=9% Similarity=0.215 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
....++|||+|||.++++++|+++|+.| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 8888873 56789999999999999999999 9999999999999998
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 281
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-12 Score=117.92 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.....+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++ ++..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345679999999999999999999999999999975 35668999999999999999999 57899999999999
Q ss_pred cCCCcc
Q 003463 309 SRPGGA 314 (818)
Q Consensus 309 a~~~~~ 314 (818)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988654
No 282
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.9e-13 Score=123.57 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHhhcCCCEEEEEeC--------CCcccEEEEEEccHHHHHHHHHHhcCcccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr---~lFs~fG~I~~v~~~--------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
....++|||+|||+++++++|+ ++|++||+|..|++. ++++|||||+|.+.++|++|++.|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999842 24569999999999999999999999999999
Q ss_pred cccccccCCCC
Q 003463 218 KLDIHFSIPKD 228 (818)
Q Consensus 218 ~L~V~~a~pk~ 228 (818)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 283
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.39 E-value=6.8e-13 Score=124.07 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999874 456899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003463 224 SIPKDN 229 (818)
Q Consensus 224 a~pk~~ 229 (818)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987554
No 284
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-12 Score=118.76 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEE-EEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~-vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34579999999999999999999999999987 765 567799999999999999999997 999999999999998
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7644
No 285
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=8.1e-13 Score=125.39 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEEccHHHHHHHHHHhcCccccc--ccccccccCCCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 229 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~-AFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~~ 229 (818)
-.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.| +.|+|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 467799999999999999999999999999876667888 9999999999999999999999988 8999999988754
Q ss_pred C
Q 003463 230 P 230 (818)
Q Consensus 230 ~ 230 (818)
.
T Consensus 109 ~ 109 (130)
T 3zzy_A 109 N 109 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=7.3e-13 Score=125.75 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456899999999999999999999999999999984 45689999999999999999999999999999999998
Q ss_pred cc
Q 003463 223 FS 224 (818)
Q Consensus 223 ~a 224 (818)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 287
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.9e-13 Score=117.22 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=65.0
Q ss_pred cceeeecCCCCCCHHH----HHHHhhcc-CCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~vteed----L~~lFs~f-G~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
..|||.|||..+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+|.||+.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599998 33 99999999999999999999999999999999999876
Q ss_pred cc
Q 003463 313 GA 314 (818)
Q Consensus 313 ~~ 314 (818)
..
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 288
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.38 E-value=1.8e-13 Score=120.39 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.+ |++|++.|++..+.|++|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999884 3678999999999999 99999999999999999999999875
Q ss_pred CC
Q 003463 228 DN 229 (818)
Q Consensus 228 ~~ 229 (818)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 289
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=3.3e-13 Score=118.68 Aligned_cols=76 Identities=16% Similarity=0.371 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|++..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 99998874 78999999999999999999999999999999999998643
No 290
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.5e-13 Score=114.79 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=65.8
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
++|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|++|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999998875 35568999999999999999999999 9999999999986
No 291
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=116.29 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE--eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~--~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
...++|||+|||+++++++|+++|++||.|..|+ ...+..|.|||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999994 34445666999999999999999999999999999999999876
Q ss_pred C
Q 003463 228 D 228 (818)
Q Consensus 228 ~ 228 (818)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 292
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=3.3e-13 Score=114.57 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
+|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999874 56789999999999999999998 9999999999999875
No 293
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.5e-13 Score=122.49 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=70.2
Q ss_pred CCCCCcEEEE--cCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccc-----cccccc
Q 003463 148 GEHPSRTLFV--RNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 220 (818)
Q Consensus 148 ~e~~srtLfV--~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l-----~gr~L~ 220 (818)
...++++||| +||+.++++++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|+|..+ .+++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3457899999 7799999999999999999999999864 4689999999999999999999999988 689999
Q ss_pred ccccCC
Q 003463 221 IHFSIP 226 (818)
Q Consensus 221 V~~a~p 226 (818)
|.|+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 998764
No 294
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-13 Score=124.30 Aligned_cols=77 Identities=17% Similarity=0.381 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC-----CCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~-----~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|+ .|++..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 346899999999999999999999999999999853 678999999999999999999 89999999999999998
Q ss_pred CCC
Q 003463 225 IPK 227 (818)
Q Consensus 225 ~pk 227 (818)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 295
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=116.41 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=67.6
Q ss_pred CCCcE-EEEcCCCCCCcHHH----HHHHhhcC-CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 150 HPSRT-LFVRNINSNVEDSE----LRALFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 150 ~~srt-LfV~NLP~~vTEee----Lr~lFs~f-G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
.|+.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 35666 99999999999988 55899999 599998 33 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003463 224 SIPKDNP 230 (818)
Q Consensus 224 a~pk~~~ 230 (818)
+..+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876643
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=113.91 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
...++|||+|||.++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985433222299999999999999999 999999999999999876554
No 297
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=4e-13 Score=120.87 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999765511 356789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 003463 225 IPKDN 229 (818)
Q Consensus 225 ~pk~~ 229 (818)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 298
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1.4e-12 Score=115.47 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=63.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCc--cCCceEEEEecCCC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPG 312 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~--i~Gr~L~V~~a~~~ 312 (818)
....+|||+|||+++|+++|+++|++||.|.+|++...++|||||+|.+.++|++ |++.. +.|++|.|.+++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3457999999999999999999999999999999877789999999999999983 56655 45999999999987
Q ss_pred ccc
Q 003463 313 GAR 315 (818)
Q Consensus 313 ~~r 315 (818)
..+
T Consensus 85 ~~~ 87 (89)
T 3d2w_A 85 HNK 87 (89)
T ss_dssp ---
T ss_pred CcC
Confidence 643
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=1.5e-12 Score=128.12 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC-CCcccEEEEEEccHHHHHHHHHHhcCccccc--ccccccccCCCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 228 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~-~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~ 228 (818)
..+|||+||++++|+++|+++|++||+|++|++. .+.+|||||+|.+.++|++|++.|+|..|.| ++|+|.|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999863 4468899999999999999999999999965 999999999875
Q ss_pred CC
Q 003463 229 NP 230 (818)
Q Consensus 229 ~~ 230 (818)
..
T Consensus 126 l~ 127 (164)
T 1sjr_A 126 LN 127 (164)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=115.98 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=67.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...+|||+|||.++|+++|+++|++||.|.+|........||||+|.+.++|.+|+. |+|..|.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 456899999999999999999999999999984433222299999999999999999 99999999999999987654
No 301
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=1.1e-12 Score=121.50 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=65.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCce-----EEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-----IKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~-----L~V~~a~ 310 (818)
...+|||.|||+++|+++|+++|++||.|..|++... |||||+|.+.++|++||+.|||.+|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3568999999999999999999999999999998644 99999999999999999999999999998 6666665
Q ss_pred CC
Q 003463 311 PG 312 (818)
Q Consensus 311 ~~ 312 (818)
+.
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 302
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=121.58 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=68.9
Q ss_pred Cccceee--ecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCcc-----CCceEEEEe
Q 003463 236 NQGTLVV--FNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI-----AGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V--~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i-----~Gr~L~V~~ 308 (818)
...+||| +||+..+++++|+++|++||.|.+|.+. ..+|||||+|.+.++|++|++.|||+++ .|++|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 3568999 6699999999999999999999999885 3589999999999999999999999988 689999999
Q ss_pred cCCC
Q 003463 309 SRPG 312 (818)
Q Consensus 309 a~~~ 312 (818)
++.-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 303
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=1.3e-12 Score=121.91 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999874 5778999999999999999999 799999999999999987
Q ss_pred CCC
Q 003463 226 PKD 228 (818)
Q Consensus 226 pk~ 228 (818)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 304
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=3.2e-13 Score=115.01 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
++|||+|||.++++++|+++|++||+|..+.+ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999988873 46789999999999999999999988 9999999999876
No 305
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.5e-13 Score=121.53 Aligned_cols=80 Identities=19% Similarity=0.437 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999998874 367899999999999999999997 999999999999999
Q ss_pred CCCCCC
Q 003463 225 IPKDNP 230 (818)
Q Consensus 225 ~pk~~~ 230 (818)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887653
No 306
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.35 E-value=1.4e-12 Score=128.29 Aligned_cols=83 Identities=19% Similarity=0.395 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....+.++|||+|||.++++++|+.+|++||.|..|.+ +++++|||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999884 5667999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003463 222 HFSIPKDN 229 (818)
Q Consensus 222 ~~a~pk~~ 229 (818)
.|+.++..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99976553
No 307
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=124.88 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEE--------E--EecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~--------v--r~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
...+|||+|||+.+|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4578999999999999999999999998865 3 34678899999999999999999999999999999999
Q ss_pred EEecCCCccc
Q 003463 306 LEPSRPGGAR 315 (818)
Q Consensus 306 V~~a~~~~~r 315 (818)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 308
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.7e-13 Score=123.07 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=70.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCe-EEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I-~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
....+|||+|||+++|+++|+++|++||.| ..|++ ++.++|||||+|.+.++|++||+. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 345799999999999999999999999999 66655 466799999999999999999986 999999999999999
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=124.95 Aligned_cols=81 Identities=19% Similarity=0.401 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------E--EeCCCcccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------L--YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~--------v--~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
..++++|||+|||.++|+++|+++|++||.|.. + ..+++++|||||+|.+.++|++|++.|+|..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356799999999999999999999999998754 2 246889999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 003463 219 LDIHFSIPKDN 229 (818)
Q Consensus 219 L~V~~a~pk~~ 229 (818)
|.|.++.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 310
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=5.8e-13 Score=127.56 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCC---eEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~---I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...+|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4568999999999999999999999999 777754 35678999999999999999999 999999999999999
Q ss_pred cCCCc
Q 003463 309 SRPGG 313 (818)
Q Consensus 309 a~~~~ 313 (818)
+.++.
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 86543
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.34 E-value=1.9e-12 Score=114.51 Aligned_cols=76 Identities=22% Similarity=0.470 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcc--cccccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~--l~gr~L~V~~a~p 226 (818)
..+..+|||+|||+++|+++|+++|++||.|.+|++...++|||||+|.+.++|++ +++.. +.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 35678999999999999999999999999999999877799999999999999984 34544 4589999999987
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 64
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=7.3e-13 Score=112.33 Aligned_cols=70 Identities=23% Similarity=0.453 Sum_probs=64.6
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999975 35678999999999999999998 5999999999999875
No 313
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=117.64 Aligned_cols=78 Identities=9% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++||+ +++..|.++.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999965 6653 57789999999999999999995 7999999999999988
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 314
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=6.8e-13 Score=127.53 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=69.1
Q ss_pred cEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe
Q 003463 190 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 269 (818)
Q Consensus 190 G~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~ 269 (818)
|+||.+|.-.+.+..++..+... ..+....-..... ..........+|||+|||+++|++||+++|++|| |++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 56777777777766666543322 2222221111111 1111223456899999999999999999999999 668865
Q ss_pred ----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 270 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 270 ----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
.++++|||||+|.+.++|++|| .+|+..|.|+.|+|..+.+...
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3567899999999999999999 7999999999999999887653
No 315
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=3.5e-12 Score=120.24 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=69.5
Q ss_pred CCCcE--EEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEEccHHHHHHHHHHhcCccccc--cccccccc
Q 003463 150 HPSRT--LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFS 224 (818)
Q Consensus 150 ~~srt--LfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~-AFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a 224 (818)
.++++ |||+||++.+++++|+++|++||.|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34554 679999999999999999999999999986444 496 9999999999999999999999987 68999999
Q ss_pred CCCCC
Q 003463 225 IPKDN 229 (818)
Q Consensus 225 ~pk~~ 229 (818)
.++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 88764
No 316
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.2e-13 Score=115.60 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
.++++|||+|||.++++++|+++|++||.|..|++...++|||||+|.+.++|++|+.. ...+.+++|+|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 45799999999999999999999999999999998777899999999999999865432 3456899999999987654
Q ss_pred C
Q 003463 230 P 230 (818)
Q Consensus 230 ~ 230 (818)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 317
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-12 Score=118.03 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=68.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
....+|||+|||+++|++||+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345699999999999999999999999955 7754 45678999999999999999995 89999999999999987
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 318
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=9.9e-13 Score=122.44 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=68.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCC---eEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~---I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999998 777764 35678999999999999999999 999999999999999
Q ss_pred cCCC
Q 003463 309 SRPG 312 (818)
Q Consensus 309 a~~~ 312 (818)
+.++
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 319
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.3e-12 Score=114.67 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=66.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
..++|||+|||.++++++|+++|++||.|.+|++...++|||||+|.+.++|++|+. ....+.|++|+|.+++++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 357899999999999999999999999999999877789999999999999976433 133558999999999887643
No 320
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.6e-13 Score=122.64 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCE-EEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I-~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||+++|+++|+++|+.||.| ..|++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 56653 467899999999999999999996 99999999999999
Q ss_pred cCCC
Q 003463 224 SIPK 227 (818)
Q Consensus 224 a~pk 227 (818)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-13 Score=126.98 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=71.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEE--------EEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~--------vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
..++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999988 644 356789999999999999999999999999999
Q ss_pred eEEEEecCCCcc
Q 003463 303 RIKLEPSRPGGA 314 (818)
Q Consensus 303 ~L~V~~a~~~~~ 314 (818)
+|+|++++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987654
No 322
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6e-13 Score=124.67 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=68.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEE---E--ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI---R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v---r--~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...+|||+|||+++|+++|+++|++||.|..+ . .++.++|||||+|.+.++|.+||+ |||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 1 356678999999999999999999 99999999999999987
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.31 E-value=1.4e-12 Score=135.59 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=71.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccC--CeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG--~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...+|||+||++.+|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.|||+.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 9999975 567789999999999999999999999999999999999
Q ss_pred cCCCc
Q 003463 309 SRPGG 313 (818)
Q Consensus 309 a~~~~ 313 (818)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=117.24 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=67.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
...+|||+|||+++|++||+++|++| .|..|++ .++++|||||+|.+.++|++|| .||+..|.||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 8888876 3567899999999999999999 6999999999999988754
No 325
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=8.3e-13 Score=119.00 Aligned_cols=79 Identities=22% Similarity=0.482 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 445789999999999999999999999999999884 56789999999999999999999 899999999999988
Q ss_pred CCCCC
Q 003463 225 IPKDN 229 (818)
Q Consensus 225 ~pk~~ 229 (818)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-13 Score=126.59 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
..+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356799999999999999999999999999987 552 4678999999999999999999999999999
Q ss_pred cccccccccCCCCCC
Q 003463 216 RRKLDIHFSIPKDNP 230 (818)
Q Consensus 216 gr~L~V~~a~pk~~~ 230 (818)
|++|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=119.93 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=69.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCC---eEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~---I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
....+|||+|||+++|+++|+++|+.||. |..|++. +.++|||||+|.+.++|++||+ +++..+.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35578999999999999999999999998 8888652 5678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 003463 308 PSRPGG 313 (818)
Q Consensus 308 ~a~~~~ 313 (818)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987643
No 328
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=2.5e-12 Score=119.06 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...++|||+|||.++++++|+++|++||+|..|.+... |||||+|.+.++|++||+.|++..|.|+.|+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 35689999999999999999999999999999987544 999999999999999999999999999994433
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=3.5e-12 Score=119.45 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=70.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCccc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r 315 (818)
...+|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++++...
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 4579999996 69999999999999999999884 67899999999999999999999999999999999999887543
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.2e-13 Score=124.57 Aligned_cols=77 Identities=9% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE---EE--eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT---LY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~---v~--~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||+++|+++|+++|+.||.|.. +. .+++++|||||+|.+.++|++||+ +++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999998754 22 367889999999999999999999 999999999999998
Q ss_pred cCC
Q 003463 224 SIP 226 (818)
Q Consensus 224 a~p 226 (818)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 331
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.30 E-value=1e-12 Score=111.40 Aligned_cols=70 Identities=19% Similarity=0.469 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
+|||+|||.++++++|+++|++||+|..+.+ +++++|||||+|.+.++|++|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999874 36789999999999999999999 4899999999999864
No 332
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=2.3e-12 Score=133.83 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..++|||+|||+++|+++|+++|++|| .|..|++ +++++|||||+|.+.++|++||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 9999884 678999999999999999999999999999999999999
Q ss_pred cCC
Q 003463 224 SIP 226 (818)
Q Consensus 224 a~p 226 (818)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=5.9e-12 Score=109.69 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=65.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhcc----C-------CeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~f----G-------~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
..++|||+|||.++++++|+++|++| | .|.++++. ..+|||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45789999999999999999999999 8 89999885 45899999999999999999 999999999999
Q ss_pred EEEe
Q 003463 305 KLEP 308 (818)
Q Consensus 305 ~V~~ 308 (818)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 334
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=1.1e-12 Score=122.13 Aligned_cols=76 Identities=7% Similarity=0.115 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999998 666652 47789999999999999999999 99999999999998
Q ss_pred ccCC
Q 003463 223 FSIP 226 (818)
Q Consensus 223 ~a~p 226 (818)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=6.8e-12 Score=125.29 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=71.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
...+|||+|||+.+++++|+++|++||.|+.|++. +.++|||||+|.+.++|++|++.|||..|.|+.|+|+++.+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45699999999999999999999999999999763 55789999999999999999999999999999999999976
Q ss_pred Cc
Q 003463 312 GG 313 (818)
Q Consensus 312 ~~ 313 (818)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.29 E-value=4.3e-12 Score=110.52 Aligned_cols=72 Identities=18% Similarity=0.387 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
.+.++|||+|||.++++++|+++|++| | .|..+++. +.+|||||+|.+.++|++|+ .|++..+.|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457899999999999999999999999 8 99999864 45999999999999999999 89999999999
Q ss_pred ccccc
Q 003463 219 LDIHF 223 (818)
Q Consensus 219 L~V~~ 223 (818)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99863
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=6.9e-12 Score=126.92 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHh--cCcccccccccccccCCCCCCCC-----CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec
Q 003463 198 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSD-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 270 (818)
Q Consensus 198 d~e~A~~Al~~L--ng~~l~gr~L~V~~a~pk~~~~~-----~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~ 270 (818)
+.+.+..|++.. ....+.+....|........+.. .....++|||+|||.++|+++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567778888766 44455555555554422222111 12345799999999999999999999999999999763
Q ss_pred ----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 271 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 271 ----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
+..+|||||+|.+.++|.+|+..+ +..+.|++|+|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 567899999999999999999855 56999999999997653
No 338
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=118.37 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999998 777763 36789999999999999999999 9999999999999
Q ss_pred cccCCC
Q 003463 222 HFSIPK 227 (818)
Q Consensus 222 ~~a~pk 227 (818)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 987653
No 339
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=7.4e-12 Score=130.66 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCccceeeecCCCCC---------CHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCcc-----
Q 003463 234 DLNQGTLVVFNLDPSV---------SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI----- 299 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~v---------teedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i----- 299 (818)
....++|||+||+..+ ++++|+++|++||.|.+|++. .++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3456799999999998 799999999999999999985 4689999999999999999999999999
Q ss_pred -------CCceEEEEecCCCcc
Q 003463 300 -------AGKRIKLEPSRPGGA 314 (818)
Q Consensus 300 -------~Gr~L~V~~a~~~~~ 314 (818)
.|+.|.|.||+....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 340
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.28 E-value=1.7e-12 Score=124.34 Aligned_cols=76 Identities=7% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
...++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999998 666552 47789999999999999999999 99999999999998
Q ss_pred ccCC
Q 003463 223 FSIP 226 (818)
Q Consensus 223 ~a~p 226 (818)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.27 E-value=5.9e-12 Score=125.74 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999985 3678999999999999999999999999999999999998
Q ss_pred CCC
Q 003463 225 IPK 227 (818)
Q Consensus 225 ~pk 227 (818)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.27 E-value=2.3e-12 Score=116.11 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999976 44568999999999999999998 9999999999999987
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=6.2e-12 Score=117.77 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|||+|| ++++++|+++|++||.|..|.+ .+++|||||+|.+.++|++|++.|++..+.|+.|+|.++.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 356799999996 7999999999999999999886 4789999999999999999999999999999999999998764
Q ss_pred C
Q 003463 229 N 229 (818)
Q Consensus 229 ~ 229 (818)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 344
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.25 E-value=3.4e-12 Score=122.69 Aligned_cols=78 Identities=9% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .+++..|.++.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 557773 4678999999999999999999 68999999999999988
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.++.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 345
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.24 E-value=9e-12 Score=117.73 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEE--EEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~--~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++. ++..|.|+.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3457899999999999999999999999 566 7763 467899999999999999999994 7899999999998
Q ss_pred ccCC
Q 003463 223 FSIP 226 (818)
Q Consensus 223 ~a~p 226 (818)
.+.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 346
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=116.95 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..++|||+|||+++|+++|+++|+.| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8888874 4678999999999999999999 5899999999999987643
No 347
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-12 Score=120.36 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=66.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCe----EEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I----~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
...+|||+|||+++|++||+++|++||.| ..|++ +++++|||||+|.+.++|++|++. |+..|.|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34689999999999999999999999975 45543 566789999999999999999986 9999999999999
Q ss_pred ecCCC
Q 003463 308 PSRPG 312 (818)
Q Consensus 308 ~a~~~ 312 (818)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88644
No 348
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.9e-12 Score=119.03 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCE----EEEE----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I----~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
...++|||+|||+++|+++|+++|++||.| ..|. .+++++|||||+|.+.++|++|++. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356899999999999999999999999975 3443 2678899999999999999999996 999999999998
Q ss_pred cccCC
Q 003463 222 HFSIP 226 (818)
Q Consensus 222 ~~a~p 226 (818)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=112.75 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----C---CCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~---~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
..+++|||+|||+++++++|+++|++||.|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999999 552 2 57899999999999999999998842 56666655
Q ss_pred ccc
Q 003463 222 HFS 224 (818)
Q Consensus 222 ~~a 224 (818)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 350
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.21 E-value=1.1e-11 Score=117.16 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=66.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeE--EEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--EIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~--~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
...+|||+|||+++|+++|+++|++| .|+ .|++ .++++|||||+|.+.++|++||+ +++..|.||.|+|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45789999999999999999999999 566 7765 35679999999999999999998 5789999999999988
Q ss_pred CCC
Q 003463 310 RPG 312 (818)
Q Consensus 310 ~~~ 312 (818)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.3e-11 Score=111.14 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=65.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----c---CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----T---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~---g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
..++|||+|||+++|+++|+++|++||.|. +++ + +.++|||||+|.+.++|++|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 643 2 4779999999999999999999994 4788888887
Q ss_pred ecCCCcccc
Q 003463 308 PSRPGGARR 316 (818)
Q Consensus 308 ~a~~~~~r~ 316 (818)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 766554443
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.9e-11 Score=127.66 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccc-----
Q 003463 149 EHPSRTLFVRNINSNV---------EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 214 (818)
Q Consensus 149 e~~srtLfV~NLP~~v---------TEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l----- 214 (818)
....++|||+||+.++ +|++|+++|++||+|.+|++. .++|||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 799999999999999999864 5799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCC
Q 003463 215 -------RRRKLDIHFSIPKDNP 230 (818)
Q Consensus 215 -------~gr~L~V~~a~pk~~~ 230 (818)
.|+.|.|.|+....++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.5e-11 Score=109.41 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCccceeeecCCCCCC-----------HHHHHHHhhccCCeEEEEe-cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 235 LNQGTLVVFNLDPSVS-----------NEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vt-----------eedL~~lFs~fG~I~~vr~-~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
...++|+|.||....+ +++|+++|++||.|.+|.+ ...++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3567999999954332 5899999999999999976 345789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003463 303 RIKLEPSRPGG 313 (818)
Q Consensus 303 ~L~V~~a~~~~ 313 (818)
+|+|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998764
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=4.5e-11 Score=109.29 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=66.6
Q ss_pred CccceeeecCCC-----CCCHHHHHHHhhccCCeEEEEec------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 236 NQGTLVVFNLDP-----SVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 236 ~~~tL~V~NLp~-----~vteedL~~lFs~fG~I~~vr~~------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
..++|+|.||.. +-++++|+++|++||.|.+|++. +.++|+|||+|.+.++|.+|++.|||+.+.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 356899999963 23789999999999999999762 3568999999999999999999999999999999
Q ss_pred EEEecCC
Q 003463 305 KLEPSRP 311 (818)
Q Consensus 305 ~V~~a~~ 311 (818)
+|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999875
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=5.7e-11 Score=109.28 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhcCCCEEEEEe-CCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 148 GEHPSRTLFVRNINSNVE-----------DSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vT-----------EeeLr~lFs~fG~I~~v~~-~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
...++++|+|+||....+ +++|+++|++||.|..|.+ ...++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456789999999944432 6899999999999999875 4457999999999999999999999999999
Q ss_pred cccccccccCCCCC
Q 003463 216 RRKLDIHFSIPKDN 229 (818)
Q Consensus 216 gr~L~V~~a~pk~~ 229 (818)
|++|.|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987654
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=3.3e-11 Score=136.60 Aligned_cols=80 Identities=28% Similarity=0.469 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
..+.++|||+|||.+||+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|+|..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999875 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003463 224 SIPKD 228 (818)
Q Consensus 224 a~pk~ 228 (818)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.15 E-value=7.9e-11 Score=107.65 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 150 HPSRTLFVRNINS-----NVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 150 ~~srtLfV~NLP~-----~vTEeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
.++++|+|+|+.. +-++++|+++|++||.|.+|.+. ++++|||||+|.+.++|++|++.|+|..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999963 23789999999999999999841 467999999999999999999999999999999
Q ss_pred ccccccCC
Q 003463 219 LDIHFSIP 226 (818)
Q Consensus 219 L~V~~a~p 226 (818)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.8e-11 Score=112.91 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=67.9
Q ss_pred cceeeecC----CCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcC----HHH----HHHHHH--HcCCCc
Q 003463 238 GTLVVFNL----DPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALK--SLNRSD 298 (818)
Q Consensus 238 ~tL~V~NL----p~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d----~e~----A~~Ai~--~LnG~~ 298 (818)
..|||+|| |+.+++++|+++|+.||+|.++++ ++.++|||||+|.| .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999964 77889999999996 333 899998 899999
Q ss_pred cCCceEEEEecCCCcc
Q 003463 299 IAGKRIKLEPSRPGGA 314 (818)
Q Consensus 299 i~Gr~L~V~~a~~~~~ 314 (818)
|.|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999887765
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=105.01 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 247 PSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 247 ~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
..+++++|+++|++||.|.+|++.+.++|||||+|.+.++|++|++.++ .+.|++|+|+|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 5689999999999999999999988899999999999999999999755 46799999999987754
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.7e-10 Score=104.03 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=64.8
Q ss_pred CccceeeecC--CCCCC--------HHHHHHHhhccCCeEEEEecC-------CCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 236 NQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 236 ~~~tL~V~NL--p~~vt--------eedL~~lFs~fG~I~~vr~~g-------~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
..+.|.|.|+ +..+. ++||++.|++||.|.+|++.. .++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567889998 33332 379999999999999998732 468999999999999999999999999
Q ss_pred cCCceEEEEecCC
Q 003463 299 IAGKRIKLEPSRP 311 (818)
Q Consensus 299 i~Gr~L~V~~a~~ 311 (818)
+.||+|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.07 E-value=1.9e-10 Score=116.38 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..++|||+|||.++++++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.+ +..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999974 4678999999999999999999865 5689999999998654
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.2e-11 Score=110.69 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=64.6
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcc----HHH----HHHHHH--HhcCcc
Q 003463 153 RTLFVRNI----NSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 213 (818)
Q Consensus 153 rtLfV~NL----P~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d----~e~----A~~Al~--~Lng~~ 213 (818)
++|||+|| |+.+++++|+++|+.||+|.+|. .+++++|||||+|.+ .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999988 378999999999996 333 889988 789999
Q ss_pred cccccccccccC
Q 003463 214 LRRRKLDIHFSI 225 (818)
Q Consensus 214 l~gr~L~V~~a~ 225 (818)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=98.98 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=63.8
Q ss_pred CcEEEEcCCC-------CCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 152 SRTLFVRNIN-------SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 152 srtLfV~NLP-------~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.++|.|.-.. .++++++|+++|++||+|..|.+.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4456665443 56899999999999999999998788999999999999999999997544 67999999998
Q ss_pred CCCC
Q 003463 225 IPKD 228 (818)
Q Consensus 225 ~pk~ 228 (818)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=4.3e-10 Score=102.70 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=67.0
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHhhcCCCEEEEEeC-------CCcccEEEEEEccHHHHHHHHHHhcCc
Q 003463 150 HPSRTLFVRNI--NSNVE--------DSELRALFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQNK 212 (818)
Q Consensus 150 ~~srtLfV~NL--P~~vT--------EeeLr~lFs~fG~I~~v~~~-------~ksrG~AFV~F~d~e~A~~Al~~Lng~ 212 (818)
.|++.|.|+|+ |.++. +++|++.|++||.|.+|++. .+++|+|||+|.+.++|++|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57999999998 44443 36899999999999999852 246899999999999999999999999
Q ss_pred ccccccccccccCC
Q 003463 213 PLRRRKLDIHFSIP 226 (818)
Q Consensus 213 ~l~gr~L~V~~a~p 226 (818)
.+.||.|.|.|+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.98 E-value=1.7e-10 Score=105.14 Aligned_cols=68 Identities=28% Similarity=0.401 Sum_probs=58.3
Q ss_pred eecCCCCCCHHHHHHHh------------hccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 242 VFNLDPSVSNEDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 242 V~NLp~~vteedL~~lF------------s~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
+.||+..+++++|++.| ++||.|.+|++. ++++|||||+|.+.++|.+|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777766666 999999999874 34589999999999999999999999999999999
Q ss_pred EEec
Q 003463 306 LEPS 309 (818)
Q Consensus 306 V~~a 309 (818)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=6.7e-10 Score=121.74 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccc---cc--ccc
Q 003463 148 GEHPSRTLFVRN--INSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLD 220 (818)
Q Consensus 148 ~e~~srtLfV~N--LP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~---gr--~L~ 220 (818)
...|+++|||+| |+..+||++|+++|++||+|.+|.+. .+||||||+|.+.++|++|++.|||..+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356899999999 58899999999999999999999764 47899999999999999999999999873 33 466
Q ss_pred cccc
Q 003463 221 IHFS 224 (818)
Q Consensus 221 V~~a 224 (818)
|.|+
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6664
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=8.1e-10 Score=121.08 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=65.6
Q ss_pred Cccceeeec--CCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccC---Cc--eEEEEe
Q 003463 236 NQGTLVVFN--LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GK--RIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~N--Lp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~---Gr--~L~V~~ 308 (818)
...+|||+| |+..+|+++|+++|++||+|++|++.. +||||||+|.+.++|++|+++|||+++. |+ .|.|.|
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 456899999 578999999999999999999998854 7899999999999999999999999873 44 688888
Q ss_pred cC
Q 003463 309 SR 310 (818)
Q Consensus 309 a~ 310 (818)
+.
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 75
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.94 E-value=2.1e-09 Score=99.77 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=64.1
Q ss_pred CccceeeecCCCCC----------CHHHHHHHhhccCCeEEEEecCC-CCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 236 NQGTLVVFNLDPSV----------SNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 236 ~~~tL~V~NLp~~v----------teedL~~lFs~fG~I~~vr~~g~-srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
..++|.|.|+=..- .++||++.|++||.|.+|.+... .+|++||+|.+.++|.+|++.|||+.+.||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35578888874322 23689999999999999987543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 003463 305 KLEPSRP 311 (818)
Q Consensus 305 ~V~~a~~ 311 (818)
+|.|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999854
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=1.6e-09 Score=101.06 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=63.5
Q ss_pred ccceeeecCCC--CC---CHHHHHHHhhccCCeEEEEec---------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 237 QGTLVVFNLDP--SV---SNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 237 ~~tL~V~NLp~--~v---teedL~~lFs~fG~I~~vr~~---------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
.++|+|.|+-. ++ .++||++.|++||.|.+|++. +.++|++||+|.+.++|.+|++.|||+.+.||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46889999842 22 368999999999999998652 23468999999999999999999999999999
Q ss_pred eEEEEecCC
Q 003463 303 RIKLEPSRP 311 (818)
Q Consensus 303 ~L~V~~a~~ 311 (818)
.|+|.|+..
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999854
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.90 E-value=4.9e-10 Score=102.09 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=59.4
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCEEEEEeC----CCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 157 VRNINSNVEDSELRALF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 157 V~NLP~~vTEeeLr~lF------------s~fG~I~~v~~~----~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
+.+||..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677778888777666 999999999853 45799999999999999999999999999999999
Q ss_pred cccc
Q 003463 221 IHFS 224 (818)
Q Consensus 221 V~~a 224 (818)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.86 E-value=3.6e-09 Score=98.71 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHHhhcCCCEEEEEeC---------CCcccEEEEEEccHHHHHHHHHHhcCccccc
Q 003463 151 PSRTLFVRNINS--N---VEDSELRALFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 216 (818)
Q Consensus 151 ~srtLfV~NLP~--~---vTEeeLr~lFs~fG~I~~v~~~---------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g 216 (818)
++++|+|+|+-. + -.+++|++.|++||.|.+|++. ++++|++||+|.+.++|++|++.|+|..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999842 2 2368999999999999998731 2467999999999999999999999999999
Q ss_pred ccccccccC
Q 003463 217 RKLDIHFSI 225 (818)
Q Consensus 217 r~L~V~~a~ 225 (818)
|.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.79 E-value=9.1e-09 Score=95.42 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCc----------HHHHHHHhhcCCCEEEEEeCCC-cccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 150 HPSRTLFVRNINSNVE----------DSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 150 ~~srtLfV~NLP~~vT----------EeeLr~lFs~fG~I~~v~~~~k-srG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
.+++.|.++|+=..-. +++|++.|++||.|.+|.+... .+|+|||+|.+.++|++|++.|+|..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4788999999833211 3578999999999999986433 5899999999999999999999999999999
Q ss_pred ccccccC
Q 003463 219 LDIHFSI 225 (818)
Q Consensus 219 L~V~~a~ 225 (818)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=3.7e-08 Score=87.04 Aligned_cols=75 Identities=25% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCccceeeecCC----CCCCH----HHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEE
Q 003463 235 LNQGTLVVFNLD----PSVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 306 (818)
Q Consensus 235 ~~~~tL~V~NLp----~~vte----edL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V 306 (818)
+...||+|.-.+ .++-. .+|.+.|++||+|..+|+.. +.+||+|.+.++|.+||+ |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 345688888776 23333 67999999999999999864 349999999999999998 9999999999999
Q ss_pred EecCCCc
Q 003463 307 EPSRPGG 313 (818)
Q Consensus 307 ~~a~~~~ 313 (818)
+++++.-
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998764
No 374
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.64 E-value=6.3e-08 Score=85.95 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=71.5
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcccEEE-eeeccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003463 655 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY-LPIDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 731 (818)
Q Consensus 655 TtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Y-lp~d~~~~-~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 731 (818)
|.|.||++|..+|++.+++.|+... ++||+| .|-+...+ +--+.|||||++++++..|.+.|+|+.|..-+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7899999999999999999999764 688885 57776544 44578999999999999999999999998653 4577
Q ss_pred EEEEeeecc
Q 003463 732 ASLAYARIQ 740 (818)
Q Consensus 732 ~~~~~A~iQ 740 (818)
+.|.||--|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 889999877
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.9e-07 Score=87.29 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=70.6
Q ss_pred CccceeeecCCCC-CCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcC-HHHHHHHHHHcC--CCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALKSLN--RSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d-~e~A~~Ai~~Ln--G~~i~Gr~L~V~~a~~ 311 (818)
....|+|+||+.. ++.++|+++|++||+|..|++.... ..|||+|.+ .++|.+|+++|+ +..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4568999999999 9999999999999999999985433 479999999 899999999995 7799999999988764
Q ss_pred Ccccchhhhcc
Q 003463 312 GGARRNLMLQL 322 (818)
Q Consensus 312 ~~~r~~~~~ql 322 (818)
..++ .|+...
T Consensus 96 eeE~-~yw~Ki 105 (121)
T 1owx_A 96 EVEK-EALKKI 105 (121)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHHHH
Confidence 4433 344443
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.46 E-value=6e-08 Score=86.62 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=69.7
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcccEE-Eeeecccccce-eEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003463 655 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL-YLPIDFKNKCN-VGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 731 (818)
Q Consensus 655 TtvMirNIPn~~~~~~l~~~id~~~~~~ydf~-Ylp~d~~~~~n-~gyafin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 731 (818)
-.|.||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|..-+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 47999999999999999999997654 4666 57777665433 367999999999999999999999998653 4578
Q ss_pred EEEEeeecc
Q 003463 732 ASLAYARIQ 740 (818)
Q Consensus 732 ~~~~~A~iQ 740 (818)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999877
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=2.6e-07 Score=82.09 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCccceeeecCCCC-----CCH----HHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 235 LNQGTLVVFNLDPS-----VSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 235 ~~~~tL~V~NLp~~-----vte----edL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
+...||+|.-++.. +-. .+|.+.|.+||+|..+|+.... +||+|.+.++|.+||+ |||.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45679999988743 222 5689999999999999986433 9999999999999998 999999999999
Q ss_pred EEecCC
Q 003463 306 LEPSRP 311 (818)
Q Consensus 306 V~~a~~ 311 (818)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998654
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=9.2e-07 Score=82.63 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcc-HHHHHHHHHHhc--Ccccccccccccc
Q 003463 150 HPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 223 (818)
Q Consensus 150 ~~srtLfV~NLP~~-vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d-~e~A~~Al~~Ln--g~~l~gr~L~V~~ 223 (818)
.+.+.|||+||+.+ +++++|+++|++||+|..|.+.. ..-.|||.|.+ .++|+.|++.++ +..|.+..+.+..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 45789999999999 99999999999999999998532 33479999999 899999999984 6778887766654
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=9.5e-07 Score=78.06 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=61.1
Q ss_pred CCcEEEEcCCC----CCCcH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 151 PSRTLFVRNIN----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 151 ~srtLfV~NLP----~~vTE----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
|.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|++ |+|..+.||.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 56788888776 23434 67899999999999998643 239999999999999999 99999999999999
Q ss_pred ccCCC
Q 003463 223 FSIPK 227 (818)
Q Consensus 223 ~a~pk 227 (818)
++.|.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.28 E-value=9.2e-07 Score=90.49 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCHHHHHHHhhccCCeEEEEec---------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 249 VSNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 249 vteedL~~lFs~fG~I~~vr~~---------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
-.+++|++.|++||.|.++.+. +.++|++||+|.+.++|.+|++.|||+.+.||.|+|.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3568999999999999999762 26789999999999999999999999999999999999753
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.7e-06 Score=76.27 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=65.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhcc-----CCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~f-----G~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
..++|-+.|||..+++..|+.+.++| |.|+.|.+.+...| |+|+|.|...|.+|..+|+|.+|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35689999999999999999999999 99999988666544 99999999999999999999999999999864
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.03 E-value=6.1e-06 Score=84.34 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=61.6
Q ss_pred CcEEEEcCCC-----CCCcHHHHHHHhhcCCCEEEEEe---------CCCcccEEEEEEccHHHHHHHHHHhcCcccccc
Q 003463 152 SRTLFVRNIN-----SNVEDSELRALFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 152 srtLfV~NLP-----~~vTEeeLr~lFs~fG~I~~v~~---------~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
++.+.+.++- .+-.+++|++.|++||+|.++.+ +++++|++||+|.+.++|++|++.|+|+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555542 23456889999999999999984 227889999999999999999999999999999
Q ss_pred cccccccC
Q 003463 218 KLDIHFSI 225 (818)
Q Consensus 218 ~L~V~~a~ 225 (818)
.|.+.|+.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999874
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=6.3e-06 Score=73.23 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCC-----CcH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 151 PSRTLFVRNINSN-----VED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 151 ~srtLfV~NLP~~-----vTE----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
|.-||+|.-++.+ +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+||+ |+|..+.||.|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 6789999988743 222 5688999999999998853322 9999999999999999 9999999999999
Q ss_pred cccC
Q 003463 222 HFSI 225 (818)
Q Consensus 222 ~~a~ 225 (818)
++-.
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8754
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00011 Score=66.64 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-----CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~f-----G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
..++|-+-+||-.++++.|+.+.+++ |.|+.|..-.. .+=|+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46899999999999999999999999 99999876444 4459999999999999998999999999999875
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00059 Score=61.40 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~-----fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..++|.|.|||.+++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++. ....|.+..|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 4689999999999999999999996 26899987544 7799999999999999983 4788899999997665
Q ss_pred CCCCCCCCCCCccceeeecCCCCCC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVS 250 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vt 250 (818)
++. ..+|.+.+|++.++
T Consensus 83 ~~~--------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PRA--------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCSCCCCCC
T ss_pred CCC--------cceEeeecCCCCCC
Confidence 433 34799999998875
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.0006 Score=61.37 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=71.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhc-----cCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGA-----YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~-----fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..+|.|.|||+.+.++.|.-+|+. =|.|..++..+ +-|+|+|.+.+.|++.++ -..+.|.|.+|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 468999999999999999999987 26899998876 679999999999999997 237899999999999888
Q ss_pred Ccccchhhhccc
Q 003463 312 GGARRNLMLQLN 323 (818)
Q Consensus 312 ~~~r~~~~~ql~ 323 (818)
....+.+++.+.
T Consensus 84 ~~~~r~ll~gl~ 95 (104)
T 2dhx_A 84 RAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCSCC
T ss_pred CCcceEeeecCC
Confidence 888888877764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.00087 Score=60.51 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=62.4
Q ss_pred cceeeecCCCCC-CH----HHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~v-te----edL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
++|+|.||+.++ +. +.++++|..|+++.....-+.-+ -..|.|.+.++|.+|...|++..+.|++|+|-|+.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 589999999866 32 56789999999888876543333 3789999999999999999999999999999999865
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.49 E-value=0.0068 Score=56.09 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=61.9
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCC-ceEEEEecCC
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 311 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G-r~L~V~~a~~ 311 (818)
.....-|.|.+.|+.. ...|.+.|++||+|.+... .....+-.|+|.++.+|++||. .||..+.| -.|-|.+...
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 3445689999999885 6778899999999999987 3456799999999999999998 69999985 6677777643
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.40 E-value=0.0054 Score=55.34 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNV-E----DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~v-T----EeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
.++|+|.||+.+| . .+.++.+|..|+++.....- ++-.=..|.|.+.++|.+|...|++..+.|+.++|.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4689999998865 2 25778999999988776532 3444579999999999999999999999999999999875
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.59 E-value=0.029 Score=49.56 Aligned_cols=64 Identities=5% Similarity=0.050 Sum_probs=52.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-eCCC------cccEEEEEEccHHHHHHHHHHhcCccccc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRR 216 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-~~~k------srG~AFV~F~d~e~A~~Al~~Lng~~l~g 216 (818)
++|.|++||+.+||+++.+.+..+.++.... ..|+ .-.-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999988765544 2222 23469999999999999999999988754
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.45 E-value=0.028 Score=50.06 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=43.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
...++| ++|+++...||.++|++||.|.--.++ ...|||-|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999854333332 2469999999999999999763
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.33 E-value=0.031 Score=49.89 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=43.8
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
..++| ++|+++...||.++|++||.|.--.++ ...|||-|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999954333333 3469999999999999999765
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.20 E-value=0.054 Score=48.23 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhc
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 210 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Ln 210 (818)
.+.++| ++|+++...||.++|+.||.|.--.+ ....|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 456677 99999999999999999996543223 34579999999999999999764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.057 Score=48.22 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 210 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Ln 210 (818)
+.++| ++|+++...||.++|+.||.|.--.+ ....|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45566 99999999999999999995443223 35579999999999999999765
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.08 E-value=0.1 Score=46.53 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=53.2
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEe-cCC------CCceEEEEEcCHHHHHHHHHHcCCCccCC-----ceEE
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPH------KRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIK 305 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-~g~------srG~aFVeF~d~e~A~~Ai~~LnG~~i~G-----r~L~ 305 (818)
-+|.|+.||+.+|++++.+.+++.-++..... .|+ .-.-|+|.|.+.++...-.+.++|..+-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 37999999999999999988887655433221 111 12348999999999999999999987654 2455
Q ss_pred EEec
Q 003463 306 LEPS 309 (818)
Q Consensus 306 V~~a 309 (818)
|++|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6665
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.07 E-value=0.13 Score=47.63 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccc-cccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHFS 224 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g-r~L~V~~a 224 (818)
..+-|.|-+.|+.. ...|...|++||+|.+... ........|.|.+..+|++||. .||..|.+ --|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35789999999885 6678889999999999875 3356799999999999999999 59988874 44555443
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.19 E-value=0.072 Score=49.96 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=56.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEE-EEec----------------C--CCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRET----------------P--HKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~-vr~~----------------g--~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
.-|.|.+.|++. ...+.+.|++||.|.+ +... + ...++..|+|++..+|.+||. -||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 468889997765 4667889999999977 2211 1 135678999999999999998 69999
Q ss_pred cCCceEEEEecC
Q 003463 299 IAGKRIKLEPSR 310 (818)
Q Consensus 299 i~Gr~L~V~~a~ 310 (818)
|.|.-|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888875
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.58 E-value=0.052 Score=61.45 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=44.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHH
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
..++|+|. .+..+++.+|.+.|++||.|.++........||.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 34689998 7999999999999999999999988776677999999999998877653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.69 E-value=0.064 Score=60.71 Aligned_cols=56 Identities=9% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHH
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 207 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~ 207 (818)
..|+|+|. .|..+++.+|.++|++||+|.++.......-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35899997 799999999999999999999998655555699999999999997765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.82 E-value=0.48 Score=44.42 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=52.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-eC-------------C-----CcccEEEEEEccHHHHHHHHHHhcCc
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TA-------------C-----KHRGFVMISYYDIRAARTAMRALQNK 212 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-~~-------------~-----ksrG~AFV~F~d~e~A~~Al~~Lng~ 212 (818)
..-|.|-+.|++.+ ..+.+.|++||.|.+-. .. . .......|+|.+..+|++||. .+|.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677888876644 56778999999987732 11 0 135678999999999999999 5999
Q ss_pred cccccccccccc
Q 003463 213 PLRRRKLDIHFS 224 (818)
Q Consensus 213 ~l~gr~L~V~~a 224 (818)
.|.|.-|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 998876666554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.11 E-value=8.7 Score=43.91 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=45.2
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
...++|+ +|..+...+|.++|+.||.|.-..++ ...|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 99999999999999999976444444 35699999999999999998863
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.93 E-value=11 Score=43.15 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=45.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 211 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng 211 (818)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3577776 9999999999999999997654433 345699999999999999998753
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.21 E-value=2e+02 Score=24.86 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=52.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCC-------ccCCceEEEEecC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-------DIAGKRIKLEPSR 310 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~-------~i~Gr~L~V~~a~ 310 (818)
.-+.|-|+|..+-..++.-.....|---.|+.. .|.|.|+|.+.++..-|+..|-.. ++.|..+.|--.-
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvisti 89 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTI 89 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECCC
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeecC
Confidence 456788999998888887777777766667653 478999999999999999877322 4556555554444
Q ss_pred CC
Q 003463 311 PG 312 (818)
Q Consensus 311 ~~ 312 (818)
|.
T Consensus 90 pe 91 (129)
T 4eyt_A 90 PE 91 (129)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.10 E-value=1.1e+02 Score=24.77 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 248 SVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 248 ~vteedL~~lFs~fG-----~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
.+...+|..++..-+ .|-.|++. ..|.||+-.. +.|.++++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456667777666443 45556664 3589999875 56788999999999999999998764
Done!