BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003465
(818 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 152/557 (27%), Positives = 218/557 (39%), Gaps = 94/557 (16%)
Query: 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSH 134
G + +++SG N I G +D S NLE + +N S IP +G S LQ LD+S
Sbjct: 175 GELKHLAISG-NKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 229
Query: 135 NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTL 193
N L+G + L L +S + GPIP L L L L+ N G IP F
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 287
Query: 194 GHLTQLTTLKLFSNQINGCIPLDFG-------------------------NLRHLKEVDL 228
G LT L L N G +P FG +R LK +DL
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 229 SGNKLNGPIASTI-GXXXXXXXXXXXXKQLSGPLPQEI--GXXXXXXXXXXXXXXXTGPI 285
S N+ +G + ++ SGP+ + TG I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 286 PXXXXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLER 345
P G IP +L L++L LKL+ N + G IP + ++ LE
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSI 405
+ + N L G IP + + TNL ++ LS N+L+G IP G G+I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 406 PSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLSLNFIS----------GMTPP 455
P+EL +C G IP+ + + ++ NFI+ GM
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 456 QH----FKQKHSIR----DRLLT--------------------------YVNHQFNRLSG 481
H + IR +RL T +++ +N LSG
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 482 QIPMTIG----------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFL 531
IP IG G + +SGS+P E+G+ GL + LS+N LDG IP M + L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 532 EYLDLSYNNIPGTVPEF 548
+DLS NN+ G +PE
Sbjct: 704 TEIDLSNNNLSGPIPEM 720
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 148/555 (26%), Positives = 216/555 (38%), Gaps = 87/555 (15%)
Query: 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN 162
L+ I + ISG++ ++ L+ LD+S NN + IP LG+ + L L +S + L+
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 163 GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDF--GNL 220
G + T L +L++SSN VGPIP L L L L N+ G IP DF G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGAC 290
Query: 221 RHLKEVDLSGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQE-IGXXXXXXXXXXXXX 279
L +DLSGN G + G SG LP + +
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 280 XXTGPIPXXXXXXXXXXXXXXXXXXXF-GP--------------------------IPPT 312
+G +P F GP IPPT
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
LS+ + L +L L N ++G+IP +G+L L + + N LEG IP + + L L L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 373 SLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSE 432
N L+G IPS + G IP + +G IP+E
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 433 IRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLT---YV----------------- 472
+ + L LDL+ N +G P FKQ I + YV
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 473 -------NHQFNRLSGQIPMTI-----GG------------------LSKLSGSVPSEIG 502
+ Q NRLS + P I GG + LSG +P EIG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 503 NCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMIN 562
+ L + L +N + G+IP E+G + L LDLS N + G +P+ ++ + + + N
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 563 FSISPTPSPASPQQE 577
++S P P Q E
Sbjct: 711 NNLS-GPIPEMGQFE 724
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 178/485 (36%), Gaps = 105/485 (21%)
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP--FTLG------------------ 194
+LS S++NG + S L+ LDLS NSL GP+ +LG
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 195 -------HLTQLTTLKLFSNQINGCIPLDF------GNLRHLKEVDLSGNKLNGPIAST- 240
L L L L +N I+G + + G L+HL +SGNK++G + +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 195
Query: 241 --------------------IGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXX 280
+G +LSG + I
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 281 XTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLS-HLTRLTTLKLFSNQINGSIPLGIG- 338
GPIP G IP LS LT L L N G++P G
Sbjct: 256 FVGPIPPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 339 ------------------------NLENLERVDMSSNKLEGPIPLTIGDLT-NLIYLDLS 373
+ L+ +D+S N+ G +P ++ +L+ +L+ LDLS
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 374 LNQLSGPIPSTFGH--XXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPS 431
N SGPI G IP L NC +G IPS
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 432 EIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491
+ +LS L +L L LN + G PQ ++ +L FN L+G+IP + +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLIL-----DFNDLTGEIPSGLSNCT 487
Query: 492 ----------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+L+G +P IG L + LSNNS G IP E+G L +LDL+ N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 542 PGTVP 546
GT+P
Sbjct: 548 NGTIP 552
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
Y+ +SG IP EIG++ L IL+L HN+++G+IP ++G+L L L LS + L+G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
LT L+ +DLS+N+L GPIP +G K +N
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 74 NGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLS 133
NGS++ + +S N + G + + P L + +++ISG+IP E+G L L ILDLS
Sbjct: 628 NGSMMFLDMS-YNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 134 HNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIP 166
N L G IP + L L E+ LS +NL+GPIP
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 46/239 (19%)
Query: 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP--LTIGDLTNLIYLDLSLNQLSGPI 381
L ++ INGS+ G +L +D+S N L GP+ ++G + L +L++S N L P
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP- 138
Query: 382 PSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHE 441
G + + G + S+ L
Sbjct: 139 -----------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKH 179
Query: 442 LDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP----------MTIGGLS 491
L +S N ISG R L +++ N S IP + I G +
Sbjct: 180 LAISGNKISG--------DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG-N 230
Query: 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTI-PLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
KLSG I C+ L + +S+N G I PL + L+YL L+ N G +P+F+
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFL 286
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 152/557 (27%), Positives = 218/557 (39%), Gaps = 94/557 (16%)
Query: 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSH 134
G + +++SG N I G +D S NLE + +N S IP +G S LQ LD+S
Sbjct: 178 GELKHLAISG-NKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232
Query: 135 NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTL 193
N L+G + L L +S + GPIP L L L L+ N G IP F
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290
Query: 194 GHLTQLTTLKLFSNQINGCIPLDFG-------------------------NLRHLKEVDL 228
G LT L L N G +P FG +R LK +DL
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 229 SGNKLNGPIASTI-GXXXXXXXXXXXXKQLSGPLPQEI--GXXXXXXXXXXXXXXXTGPI 285
S N+ +G + ++ SGP+ + TG I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 286 PXXXXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLER 345
P G IP +L L++L LKL+ N + G IP + ++ LE
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 346 VDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSI 405
+ + N L G IP + + TNL ++ LS N+L+G IP G G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 406 PSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLSLNFIS----------GMTPP 455
P+EL +C G IP+ + + ++ NFI+ GM
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 456 QH----FKQKHSIR----DRLLT--------------------------YVNHQFNRLSG 481
H + IR +RL T +++ +N LSG
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 482 QIPMTIG----------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFL 531
IP IG G + +SGS+P E+G+ GL + LS+N LDG IP M + L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 532 EYLDLSYNNIPGTVPEF 548
+DLS NN+ G +PE
Sbjct: 707 TEIDLSNNNLSGPIPEM 723
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 178/485 (36%), Gaps = 105/485 (21%)
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP--FTLG------------------ 194
+LS S++NG + S L+ LDLS NSL GP+ +LG
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 195 -------HLTQLTTLKLFSNQINGCIPLDF------GNLRHLKEVDLSGNKLNGPIAST- 240
L L L L +N I+G + + G L+HL +SGNK++G + +
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSR 198
Query: 241 --------------------IGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXX 280
+G +LSG + I
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 281 XTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLS-HLTRLTTLKLFSNQINGSIPLGIG- 338
GPIP G IP LS LT L L N G++P G
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 339 ------------------------NLENLERVDMSSNKLEGPIPLTIGDLT-NLIYLDLS 373
+ L+ +D+S N+ G +P ++ +L+ +L+ LDLS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 374 LNQLSGPIPSTFGH--XXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPS 431
N SGPI G IP L NC +G IPS
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 432 EIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491
+ +LS L +L L LN + G PQ ++ +L FN L+G+IP + +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLIL-----DFNDLTGEIPSGLSNCT 490
Query: 492 ----------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNI 541
+L+G +P IG L + LSNNS G IP E+G L +LDL+ N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 542 PGTVP 546
GT+P
Sbjct: 551 NGTIP 555
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
Y+ +SG IP EIG++ L IL+L HN+++G+IP ++G+L L L LS + L+G IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
LT L+ +DLS+N+L GPIP +G K +N
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 74 NGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLS 133
NGS++ + +S N + G + + P L + +++ISG+IP E+G L L ILDLS
Sbjct: 631 NGSMMFLDMS-YNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 134 HNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIP 166
N L G IP + L L E+ LS +NL+GPIP
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 46/239 (19%)
Query: 324 LFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP--LTIGDLTNLIYLDLSLNQLSGPI 381
L ++ INGS+ G +L +D+S N L GP+ ++G + L +L++S N L P
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP- 141
Query: 382 PSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHE 441
G + + G + S+ L
Sbjct: 142 -----------------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKH 182
Query: 442 LDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP----------MTIGGLS 491
L +S N ISG R L +++ N S IP + I G +
Sbjct: 183 LAISGNKISG--------DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG-N 233
Query: 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTI-PLEMGKIIFLEYLDLSYNNIPGTVPEFI 549
KLSG I C+ L + +S+N G I PL + L+YL L+ N G +P+F+
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFL 289
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 45/241 (18%)
Query: 307 GPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTN 366
GPIPP ++ LT+L L + ++G+IP + ++ L +D S N L G +P +I L N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 367 LIYLDLSLNQLSGPIPSTFGHXXXXXXXXXXXXXXXGSIPSELMNCFXXXXXXXXXXXXT 426
L+ + N++SG IP ++G S+L T
Sbjct: 151 LVGITFDGNRISGAIPDSYGSF------------------SKLF-----TSMTISRNRLT 187
Query: 427 GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMT 486
G+IP NL+ L +DLS N + G K++ + L N L+ +
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK------NSLAFDLGKV 240
Query: 487 IGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546
GLSK N +GL L NN + GT+P + ++ FL L++S+NN+ G +P
Sbjct: 241 --GLSK----------NLNGL---DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 547 E 547
+
Sbjct: 286 Q 286
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 99 CFPNLESFRIWYSNISG-------NIPSEIGALSKLQILDLSH-NNLTGTIPSKLGNLNN 150
C + +++R+ ++SG IPS + L L L + NNL G IP + L
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102
Query: 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L LY++ +N++G IP L + L LD S N+L G +P ++ L L + N+I+
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 211 GCIPLDFGNLRHL-KEVDLSGNKLNGPIASTIG 242
G IP +G+ L + +S N+L G I T
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 26/220 (11%)
Query: 164 PIPSTLGHLTRLSILDLSS-NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRH 222
PIPS+L +L L+ L + N+LVGPIP + LTQL L + ++G IP ++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 223 LKEVDLSGNKLNGPIASTIGXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXT 282
L +D S N L+G + +I ++SG +P G
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---------------- 170
Query: 283 GPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN 342
G IPPT ++L L + L N + G + G+ +N
Sbjct: 171 -------SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 343 LERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382
+++ ++ N L + +G NL LDL N++ G +P
Sbjct: 223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 98 SCFPNLESFRIWYSNISGNIPSEIGALSKL-QILDLSHNNLTGTIPSKLGNLNNLVELYL 156
S PNL + ISG IP G+ SKL + +S N LTG IP NL NL + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHL---TQLTTLKLFSNQINGCI 213
SR+ L G G + L+ NSL F LG + L L L +N+I G +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 214 PLDFGNLRHLKEVDLSGNKLNGPI 237
P L+ L +++S N L G I
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 78/204 (38%), Gaps = 11/204 (5%)
Query: 256 QLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXXXXFGPIPPTLSH 315
L GP+P I +G IP G +PP++S
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENL-ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL 374
L L + N+I+G+IP G+ L + +S N+L G IP T +L NL ++DLS
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 375 NQLSGPIPSTFG---HXXXXXXXXXXXXXXXGSIP-SELMNCFXXXXXXXXXXXXTGRIP 430
N L G FG + G + S+ +N G +P
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-----GTLP 261
Query: 431 SEIRNLSYLHELDLSLNFISGMTP 454
+ L +LH L++S N + G P
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 86/226 (38%), Gaps = 26/226 (11%)
Query: 343 LERVDMSSNKLEGPIPLTIGDLTNLIYLDL----SLNQLSGPIPSTFGHXXXXXXXXXXX 398
+ +D+S L P P+ L NL YL+ +N L GPIP
Sbjct: 52 VNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 399 XXXXGSIPSELMNCFXXXXXXXXXXXXTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458
G+IP L +G +P I +L L + N ISG P
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---- 166
Query: 459 KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS---------KLSGSVPSEIGNCSGLLN 509
+ +L T + NRL+G+IP T L+ L G G+
Sbjct: 167 -DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 510 VTLSNNSLDGTIPLEMGKIIF---LEYLDLSYNNIPGTVPEFINRI 552
+ L+ NSL ++GK+ L LDL N I GT+P+ + ++
Sbjct: 226 IHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 120 EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179
++G L LDL +N + GT+P L L L L +S +NL G IP G+L R +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 180 LSSNSLV--GPIP 190
++N + P+P
Sbjct: 298 YANNKCLCGSPLP 310
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 127/320 (39%), Gaps = 45/320 (14%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 81
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGX 243
+ + I L LT L L SNQ+ PL NL L+ +D+S NK++ S +
Sbjct: 140 T-ISDIS-ALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAK 193
Query: 244 XXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXX 303
Q+S P I G +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--- 250
Query: 304 XXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLTIG 362
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P I
Sbjct: 251 --ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--IS 302
Query: 363 DLTNLIYLDLSLNQLSGPIP 382
+L NL YL L N +S P
Sbjct: 303 NLKNLTYLTLYFNNISDISP 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 127/320 (39%), Gaps = 45/320 (14%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 81
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGX 243
+ + I L LT L L SNQ+ PL NL L+ +D+S NK++ S +
Sbjct: 140 T-ISDIS-ALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAK 193
Query: 244 XXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXX 303
Q+S P I G +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--- 250
Query: 304 XXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLTIG 362
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P I
Sbjct: 251 --ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--IS 302
Query: 363 DLTNLIYLDLSLNQLSGPIP 382
+L NL YL L N +S P
Sbjct: 303 NLKNLTYLTLYFNNISDISP 322
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 81 SLSGVNGIRG--KLDQFNFSC--------FPNLESFRIWYSNISGNIPSEIGALSKLQIL 130
++S ++ + G L Q NFS NL + +IS N S+I L+KL L
Sbjct: 140 TISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL--DISSNKVSDISVLAKLTNL 197
Query: 131 D---LSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG 187
+ ++N ++ P LG L NL EL L+ + L TL LT L+ LDL++N +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 253
Query: 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
P L LT+LT LKL +NQI+ PL L L ++L+ N+L
Sbjct: 254 LAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQL 295
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 127/320 (39%), Gaps = 45/320 (14%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 81
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGX 243
+ + I L LT L L SNQ+ PL NL L+ +D+S NK++ S +
Sbjct: 140 T-ISDIS-ALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAK 193
Query: 244 XXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXXXX 303
Q+S P I G +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--- 250
Query: 304 XXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLTIG 362
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P I
Sbjct: 251 --ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP--IS 302
Query: 363 DLTNLIYLDLSLNQLSGPIP 382
+L NL YL L N +S P
Sbjct: 303 NLKNLTYLTLYFNNISDISP 322
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 60/146 (41%), Gaps = 3/146 (2%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISG--NIPSEI-GALSKLQILDLSHNNLTGTIPSKLGN 147
KL F L R+ Y N + +P+ I L L+ L ++ N L
Sbjct: 48 KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107
Query: 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L NL EL L R+ L P LT+L+ L L N L LT L L+L++N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 208 QINGCIPLDFGNLRHLKEVDLSGNKL 233
Q+ F L LK + L N+L
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 316 LTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLS 373
LT+L L L N++ ++P GI L+NLE + ++ NKL+ +P+ + D L NL L L
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD 117
Query: 374 LNQLSGPIPSTF 385
NQL P F
Sbjct: 118 RNQLKSLPPRVF 129
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
L L TL + N++ ++P+G+ L NL + + N+L+ P LT L YL
Sbjct: 81 FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 372 LSLNQL 377
L N+L
Sbjct: 140 LGYNEL 145
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 50/322 (15%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 81
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 184 SLVGPIPFTLGHLTQLTTLKL--FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
++ + L+ LT+L+ F NQ+ PL NL L+ +D+S NK++ S +
Sbjct: 140 TISD-----ISALSGLTSLQQLNFGNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVL 190
Query: 242 GXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXX 301
Q+S P I G +
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ- 249
Query: 302 XXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLT 360
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P
Sbjct: 250 ----ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP-- 299
Query: 361 IGDLTNLIYLDLSLNQLSGPIP 382
I +L NL YL L N +S P
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP 321
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 50/322 (15%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 81
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 82 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 184 SLVGPIPFTLGHLTQLTTLKL--FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
++ + L+ LT+L+ F NQ+ PL NL L+ +D+S NK++ S +
Sbjct: 140 TISD-----ISALSGLTSLQQLNFGNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVL 190
Query: 242 GXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXX 301
Q+S P I G +
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ- 249
Query: 302 XXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLT 360
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P
Sbjct: 250 ----ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP-- 299
Query: 361 IGDLTNLIYLDLSLNQLSGPIP 382
I +L NL YL L N +S P
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP 321
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 50/322 (15%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 32 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 86
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 87 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144
Query: 184 SLVGPIPFTLGHLTQLTTLKL--FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
++ + L+ LT+L+ F NQ+ PL NL L+ +D+S NK++ S +
Sbjct: 145 TISD-----ISALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVL 195
Query: 242 GXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXX 301
Q+S P I G +
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ- 254
Query: 302 XXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLT 360
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P
Sbjct: 255 ----ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP-- 304
Query: 361 IGDLTNLIYLDLSLNQLSGPIP 382
I +L NL YL L N +S P
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 50/322 (15%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS 143
G + + Q + L++ R+ +I G + L+ L ++ S+N LT P
Sbjct: 31 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPL 85
Query: 144 K--------------------LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
K L NL NL L L + + P L +LT L+ L+LSSN
Sbjct: 86 KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 143
Query: 184 SLVGPIPFTLGHLTQLTTLKL--FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI 241
++ + L+ LT+L+ F NQ+ PL NL L+ +D+S NK++ S +
Sbjct: 144 TISD-----ISALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVL 194
Query: 242 GXXXXXXXXXXXXKQLSGPLPQEIGXXXXXXXXXXXXXXXTGPIPXXXXXXXXXXXXXXX 301
Q+S P I G +
Sbjct: 195 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ- 253
Query: 302 XXXXFGPIPPTLSHLTRLTTLKLFSNQINGSIPL-GIGNLENLERVDMSSNKLEGPIPLT 360
+ P LS LT+LT LKL +NQI+ PL G+ L NLE ++ N+LE P
Sbjct: 254 ----ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISP-- 303
Query: 361 IGDLTNLIYLDLSLNQLSGPIP 382
I +L NL YL L N +S P
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP 325
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
LS LQI ++S N + + L LYL+ ++L +P+ + +L+ L +LDLS N
Sbjct: 231 LSNLQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L +P LG QL F N + +P +FGNL +L+ + + GN L
Sbjct: 281 RLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P+EI LS L++LDLSHN LT ++P++LG+ L Y N+ +P G+L L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQ 319
Query: 177 ILDLSSNSL 185
L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP-EFIN 550
+P+EI N S L + LS+N L ++P E+G L+Y ++N+ T+P EF N
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGN 314
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 116 NIPSEIGALSKLQILDLSHNNLT----GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGH 171
N+P + + + L LDLSHNNL+ P++L NL++L+ LS ++LN
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVP 86
Query: 172 LTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
+ L LDLSSN L F L L L L++N I F ++ L+++ LS N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 232 KL 233
++
Sbjct: 147 QI 148
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181
G + QIL L N +T P +L NL ELYL + L LT+L++LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
+N L L L L + N++ +P L HL + L N+L
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK 148
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPSEI-GALSKLQILDLSHNNLTGTIPSKLGNLN 149
KL+ F NL+ + SN G +P + +L++L +LDL N LT + L
Sbjct: 54 KLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
+L EL++ + L +P + LT L+ L L N L L+ LT LF N
Sbjct: 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 317 TRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLSLN 375
T L L NQI P +L NL+ + + SN+L G +P+ + D LT L LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 376 QLS 378
QL+
Sbjct: 99 QLT 101
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLN 375
LT+LT L L +NQ+ L +L+ + M NKL +P I LT+L +L L N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 376 QL 377
QL
Sbjct: 146 QL 147
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 119 SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178
S I L ++ LDL+ +T P L L+NL LYL + + P L LT L L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN--GP 236
+ + + P L +L++LTTLK N+I+ PL +L +L EV L N+++ P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP 212
Query: 237 IAST 240
+A+T
Sbjct: 213 LANT 216
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 49/111 (44%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
L++L L L++N L +L L +LYL + L LT+L L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L LT L TL L +NQ+ F L L+ + L GN+ +
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 49/111 (44%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L+KL L+L +N L +L L L L+ + L HLT+L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
N L LT+L L+L +NQ+ F L +L+ + LS N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
++PS I A + LDL L + L L L L + L LT L
Sbjct: 28 SVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L L++N L HLTQL L L NQ+ F L LKE+ L+ N+L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Score = 35.8 bits (81), Expect = 0.094, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
HLT+L L L NQ+ S+P G+ L L+ + +++N+L+ LTNL L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 372 LSLNQL 377
LS NQL
Sbjct: 162 LSTNQL 167
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 316 LTRLTTLKLFSNQINGSIPLG-IGNLENLERVDMSSNKLE 354
LT+L L+L +NQ+ SIP G L NL+ + +S+N+L+
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 81 SLSGVNGIRG-KLDQFNFSCFPN--------LESFRIWYSNISGNIPSEIGALSKLQILD 131
+ SG+N + L++ N + P L R+ + NI+ L +L++L+
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 132 LSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP 190
+SH T+ P+ L LN L L ++ NL + HL L L+LS N +
Sbjct: 207 ISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 191 FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L L +L ++L Q+ P F L +L+ +++SGN+L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 310 PPTLSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLI 368
P ++L L TL L SN++ IPLG+ L NL ++D+S NK+ + DL NL
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 369 YLDLSLNQL 377
L++ N L
Sbjct: 132 SLEVGDNDL 140
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 95 FNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
+ F NL+S + +++ L+ L+ L L NLT L +L+ L+ L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP 214
L N+N + L RL +L++S + + + LT+L + +
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 215 LDFGNLRHLKEVDLSGNKLNGPIASTIG 242
L +L +L+ ++LS N PI++ G
Sbjct: 242 LAVRHLVYLRFLNLSYN----PISTIEG 265
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 119 SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178
S I L ++ LDL+ +T P L L+NL LYL + + P L LT L L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
+ +N + P L +L++LTTL+ N+I+ PL +L +L EV L N++
Sbjct: 163 SIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPL--ASLPNLIEVHLKDNQI 213
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
L+ LT L L + +NQ+N PL NL L + NK+ PL L NLI + L
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTTLRADDNKISDISPL--ASLPNLIEVHL 208
Query: 373 SLNQLSGPIP 382
NQ+S P
Sbjct: 209 KDNQISDVSP 218
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 110 YSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169
YS ++P+ I A + LDL N+L L +L +LYL + L
Sbjct: 15 YSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72
Query: 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229
LT L+ L+LS+N L LTQL L L +NQ+ F L LK++ L
Sbjct: 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 230 GNKL 233
N+L
Sbjct: 133 QNQL 136
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
L+ L L L N L L +L L LS + L LT+L L L++N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
L LTQL L+L+ NQ+ F L L+ + L N
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 696 NILLNSEFEAFFGNFGVARLLN-SDSSNRTLIAGTYRYIAP 735
NILL+ EFEA G+FG+A+L++ D + GT +IAP
Sbjct: 172 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAP 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 108 IWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGN-----LNNLVELYLSRSNLN 162
+ Y + GN +I AL +L +L++ LTG L N L NL EL L + L
Sbjct: 65 VRYLALGGNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 163 GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRH 222
LT L+ L+L+ N L LT LT L L NQ+ F L
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 223 LKEVDLSGNKL 233
LK++ L N+L
Sbjct: 183 LKDLRLYQNQL 193
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 44/108 (40%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
L+ L+ L L N L L NL L L+ + L LT L+ LDLS N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
L LTQL L+L+ NQ+ F L L+ + L N
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
L LT LT L L NQ+ S+P G+ L NL+ + + N+L+ LTNL YL+
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 372 LSLNQL 377
L+ NQL
Sbjct: 140 LAHNQL 145
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
LT L L L NQ+ S+P G+ L NL ++++ N+L+ LTNL LD
Sbjct: 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 372 LSLNQL 377
LS NQL
Sbjct: 164 LSYNQL 169
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
LT LT L L NQ+ S+P G+ L NL +D+S N+L+ LT L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 372 LSLNQL 377
L NQL
Sbjct: 188 LYQNQL 193
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 85 VNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTG 139
V I + ++ NF P+ F ++S N +G+ S +LQ+LDLS +
Sbjct: 8 VPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 67
Query: 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L++L L L+ + + L+ L L +L F +GHL L
Sbjct: 68 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 127
Query: 200 TTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNG 235
L + N I +P F NL +L+ +DLS NK+
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 85 VNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTG 139
V I + + NF P+ F ++S N +G+ S +LQ+LDLS +
Sbjct: 9 VPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 68
Query: 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L++L L L+ + + L+ L L +L F +GHL L
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 128
Query: 200 TTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNG 235
L + N I +P F NL +L+ +DLS NK+
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 108 IWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGN-----LNNLVELYLSRSNLN 162
+ Y + GN +I AL +L +L++ LTG L N L NL EL L + L
Sbjct: 65 VRYLALGGNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 163 GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRH 222
LT L+ L L N L LT LT L L +NQ+ F L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 223 LKEVDLSGNKL 233
LK++ L+ N+L
Sbjct: 183 LKQLSLNDNQL 193
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 314 SHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
LT LT L L+ NQ+ S+P G+ L NL R+D+ +N+L+ LT L L L
Sbjct: 130 DKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 373 SLNQL 377
+ NQL
Sbjct: 189 NDNQL 193
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 41/108 (37%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
L+ L+ L L N L L NL LYL + L LT L+ LDL +N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
L LTQL L L NQ+ F L L + L N
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLD 371
L LT LT L L NQ+ S+P G+ L NL+ + + N+L+ LTNL YL
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 372 LSLNQL 377
L NQL
Sbjct: 140 LYHNQL 145
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 314 SHLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372
LT L L L NQ+ S+P G+ L NL + + N+L+ LTNL LDL
Sbjct: 106 DKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 373 SLNQL 377
NQL
Sbjct: 165 DNNQL 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 85 VNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTG 139
V I + + NF P+ F ++S N +G+ S +LQ+LDLS +
Sbjct: 8 VPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 67
Query: 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L++L L L+ + + L+ L L +L F +GHL L
Sbjct: 68 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 127
Query: 200 TTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNG 235
L + N I +P F NL +L+ +DLS NK+
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 696 NILLNSEFEAFFGNFGVARLLN-SDSSNRTLIAGTYRYIAP 735
NILL+ EFEA G+FG+A+L++ D + G +IAP
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAP 204
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 85 VNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTG 139
V I + + NF P+ F ++S N +G+ S +LQ+LDLS +
Sbjct: 7 VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L++L L L+ + + L+ L L +L F +GHL L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 200 TTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNG 235
L + N I +P F NL +L+ +DLS NK+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L+KL L+L +N L +L L L L+ + L HLT+L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
N L LT+L L+L +NQ+ F L +L+ + LS N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%)
Query: 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183
L++L L L++N L +L L +LYL + L LT+L L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234
L LT L TL L +NQ+ F L L+ + L GN+ +
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
++PS I A + LDL L + L L L L + L LT L
Sbjct: 28 SVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L L++N L HLTQL L L NQ+ F L LKE+ L+ N+L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 315 HLTRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLS 373
HLT+L L L NQ+ S+P G+ L L+ + +++N+L+ LTNL L LS
Sbjct: 105 HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 374 LNQL 377
NQL
Sbjct: 164 TNQL 167
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + ++ GT YIAP
Sbjct: 171 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 210
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + ++ GT YIAP
Sbjct: 169 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 208
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + ++ GT YIAP
Sbjct: 145 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAP 184
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 85 VNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTG 139
V I + + NF P+ F ++S N +G+ S +LQ+LDLS +
Sbjct: 9 VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 68
Query: 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199
+L++L L L+ + + L+ L L +L F +GHL L
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTL 128
Query: 200 TTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNG 235
L + N I +P F NL +L+ +DLS NK+
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
++ ELYL N +P L + L+++DLS+N + + ++TQL TL L N++
Sbjct: 32 DVTELYLD-GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 210 NGCIPLDFGNLRHLKEVDLSGNKLN 234
P F L+ L+ + L GN ++
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P E+ L ++DLS+N ++ N+ L+ L LS + L P T L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 177 ILDLSSNSL 185
+L L N +
Sbjct: 106 LLSLHGNDI 114
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS 378
+T L L NQ +P + N ++L +D+S+N++ + ++T L+ L LS N+L
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 379 GPIPSTF 385
P TF
Sbjct: 92 CIPPRTF 98
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488
+P E+ N +L +DLS N IS ++ Q S +LLT + +NRL P T
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTLI-LSYNRLRCIPPRTFD 99
Query: 489 GLSKL 493
GL L
Sbjct: 100 GLKSL 104
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNL 161
N ++ R+ +++ IP++ Q L L++N +T P +L NL +LY + + L
Sbjct: 18 NCQNIRL--ASVPAGIPTD------KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 162 NGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
LT+L+ LDL+ N L +L LT + L++N
Sbjct: 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
L+L+ + + P HL L L +SN L LTQLT L L N +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 214 PLDFGNLRHLKEVDLSGN 231
F NL+ L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 322 LKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD-LTNLIYLDLSLNQL 377
L L +NQI P +L NL+++ +SNKL IP + D LT L LDL+ N L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHL 93
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%)
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
LYL + + P LT+L+ LDL +N L LTQLT L L NQ+
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 214 PLDFGNLRHLKEVDLSGN 231
F NLR L + L N
Sbjct: 95 RGAFDNLRSLTHIWLLNN 112
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + + GT YIAP
Sbjct: 147 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 186
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + + GT YIAP
Sbjct: 147 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 186
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + E G+FG+A + D + + GT YIAP
Sbjct: 151 NLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAP 190
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 108 IW-YSNISGNI-PSEIGALSKLQILDLSHN-NLTGTIPSKLGNLNNLVELYLSRSNLNGP 164
+W +SN+ I + L+ L+ LDLS N L P+ L L L+L R L
Sbjct: 60 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224
P L L L L N+L T L LT L L N+I+ F L L
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 225 EVDLSGNKL 233
+ L N++
Sbjct: 180 RLLLHQNRV 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 94 QFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTGTIPSKLGNL 148
+ NF P+ F ++S N +G+ S +LQ+LDLS + +L
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
++L L L+ + + L+ L L +L F +GHL L L + N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 209 INGC-IPLDFGNLRHLKEVDLSGNKL 233
I +P F NL +L+ +DLS NK+
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 96 NFSCFPNLESFRIWYSNISGNIP-SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154
NF LE +SN+ S +L L LD+SH + L++L L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 155 YLSRSNLN-GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
++ ++ +P L L+ LDLS L P L+ L L + SNQ+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Query: 214 PLDFGNLRHLKEVDLSGN 231
F L L+++ L N
Sbjct: 511 DGIFDRLTSLQKIWLHTN 528
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 108 IW-YSNISGNI-PSEIGALSKLQILDLSHN-NLTGTIPSKLGNLNNLVELYLSRSNLNGP 164
+W +SN+ I + L+ L+ LDLS N L P+ L L L+L R L
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 165 IPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224
P L L L L N+L T L LT L L N+I+ F L L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 225 EVDLSGNKL 233
+ L N++
Sbjct: 181 RLLLHQNRV 189
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 94 QFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTGTIPSKLGNL 148
+ NF P+ F ++S N +G+ S +LQ+LDLS + +L
Sbjct: 40 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
++L L L+ + + L+ L L +L F +GHL L L + N
Sbjct: 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159
Query: 209 INGC-IPLDFGNLRHLKEVDLSGNKL 233
I +P F NL +L+ +DLS NK+
Sbjct: 160 IQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 118 PSEIGALSKLQILDLSHNNL--TGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL-TR 174
P+ +LS LQ+L++SHNN T P K LN+L L S +++ L H +
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSS 568
Query: 175 LSILDLSSNSLV 186
L+ L+L+ N
Sbjct: 569 LAFLNLTQNDFA 580
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 114 SGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLT 173
S + E L LQ L L + ++P+ + NL NL L + S L+ P+ + HL
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLP 229
Query: 174 RLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSG 230
+L LDL + + P G L L L +PLD L L+++DL G
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 94 QFNFSCFPNLESFRIWYSNISGNIPSEIGALS-----KLQILDLSHNNLTGTIPSKLGNL 148
+ NF P+ F ++S N +G+ S +LQ+LDLS + +L
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 149 NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ 208
++L L L+ + + L+ L L +L F +GHL L L + N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 209 INGC-IPLDFGNLRHLKEVDLSGNKL 233
I +P F NL +L+ +DLS NK+
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 118 PSEIGALSKLQILDLSHNNL--TGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL-TR 174
P+ +LS LQ+L++SHNN T P K LN+L L S +++ L H +
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSS 544
Query: 175 LSILDLSSNSLV 186
L+ L+L+ N
Sbjct: 545 LAFLNLTQNDFA 556
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 313 LSHLTRLTTLKLFSNQING-SIPLGIGNLENLERVDMSSNKLEG 355
+ HL L L + N I +P NL NLE +D+SSNK++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%)
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
LYL + + P LT+L+ LDL +N L LTQLT L L NQ+
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 214 PLDFGNLRHLKEVDLSGN 231
F NL+ L + L N
Sbjct: 103 RGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%)
Query: 154 LYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCI 213
LYL + + P LT+L+ LDL +N L LTQLT L L NQ+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 214 PLDFGNLRHLKEVDLSGN 231
F NL+ L + L N
Sbjct: 95 RGAFDNLKSLTHIWLLNN 112
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
NILLN+E A +FGVA L + R + GT ++AP
Sbjct: 155 NILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAP 194
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + + G+FG+A + D + + GT YIAP
Sbjct: 172 NLFLNDDMDVKIGDFGLATKIEFDGERKKXLCGTPNYIAP 211
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK 737
N+ L+ + G+FG+AR+LN D+S GT Y++P +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQ 187
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK 737
N+ L+ + G+FG+AR+LN D+S GT Y++P +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ 187
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + + G+FG+A + D + + GT YIAP
Sbjct: 172 NLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAP 211
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184
S ++ DLS + + + S + +L +L L+++ +N + LT L L+LS N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 185 LVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L +L +L L L N I F L +LKE+ L N+L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%)
Query: 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365
F + SH T L L L N+IN L +L ++++S N L +L
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347
Query: 366 NLIYLDLSLNQLSGPIPSTF 385
L LDLS N + +F
Sbjct: 348 KLEVLDLSYNHIRALGDQSF 367
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 99 CFPNLESFRIWYSNISGNIPSE-----IGALSKLQILDLSHNNLTGTIPSKL--GNLNNL 151
C P+ SF + N + N+ ++ L +LQ L L N L L N+++L
Sbjct: 348 CPPSPSSFT--FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405
Query: 152 VELYLSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L +S ++LN T + +L+LSSN L G + L ++ L L +N+I
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463
Query: 211 GCIPLDFGNLRHLKEVDLSGNKLNG 235
IP D +L+ L+E++++ N+L
Sbjct: 464 S-IPKDVTHLQALQELNVASNQLKS 487
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 124 LSKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
+S L+ LD+S N+L + +++ L LS + L G + L ++ +LDL +
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
N ++ IP + HL L L + SNQ+ F L L+ + L N
Sbjct: 460 NRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
DLS + + + H T L L L N+IN F L HLKE+ L N+L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L+NL L L+ NL IP+ L L +L LDLS N L P + L L L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 208 QINGCIPLDFGNLRHLKEVDLSGNKL 233
QI F NL+ L E++L+ N L
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
F CF L+ + +++ G +PS + L+ L+ L LS N+ N +L LY+
Sbjct: 271 FQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI 329
Query: 157 SRSNLNGPI--PSTLGHLTRLSILDLSSNSLVGP--IPFTLGHLTQLTTLKLFSNQINGC 212
R N+ L L L LDLS N + L +L+ L TL L N+ G
Sbjct: 330 -RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 213 IPLDFGNLRHLKEVDLSGNKL--NGP 236
F L+ +DL+ +L N P
Sbjct: 389 QSQAFKECPQLELLDLAFTRLHINAP 414
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 70/163 (42%), Gaps = 21/163 (12%)
Query: 91 KLDQFNFSCFPNLESFRIWYSNISGNIPS---EIGALSKL---QILDLSHNNLTGT--IP 142
+L Q + + FP+L I GN+ +G L KL Q LDLSHN++ +
Sbjct: 312 QLCQISAANFPSLTHLYI-----RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL---VGPIPFTLGHLTQL 199
+L NL++L L LS + G +L +LDL+ L PF H Q+
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 200 TTLK-LFSNQINGCIPLDFGNLRHLKEVDLSGNKL-NGPIAST 240
L F + N + LRHL +L GN +G I T
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHL---NLKGNHFQDGTITKT 466
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + + G+FG+A + D + + GT YIAP
Sbjct: 172 NLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAP 211
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG 122
H K + +L +I ++L+ N +R +L NF+ + L S + ++ IS P
Sbjct: 13 HLKLTQVPDDLPTNITVLNLTH-NQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L++L+L HN L+ NL EL+L +++ + L LDLS
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 183 NSL 185
N L
Sbjct: 131 NGL 133
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG 122
H K + +L +I ++L+ N +R +L NF+ + L S + ++ IS P
Sbjct: 18 HLKLTQVPDDLPTNITVLNLTH-NQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 75
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L++L+L HN L+ NL EL+L +++ + L LDLS
Sbjct: 76 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 135
Query: 183 NSL 185
N L
Sbjct: 136 NGL 138
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
N+ LN + + G+FG+A + D + + GT YIAP
Sbjct: 156 NLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAP 195
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIG 122
H K + +L +I ++L+ N +R +L NF+ + L S + ++ IS P
Sbjct: 23 HLKLTQVPDDLPTNITVLNLTH-NQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 80
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L++L+L HN L+ NL EL+L +++ + L LDLS
Sbjct: 81 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 140
Query: 183 NSL 185
N L
Sbjct: 141 NGL 143
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR--- 174
P L+ LQ L L NNL + +L NL L+L + IPS H R
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR----IPSVPEHAFRGLH 176
Query: 175 -LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQIN 210
L L L N + P L +L TL LF+N ++
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 139 GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQ 198
++P+ + ++ LY+++ + P LT+L+ L+L+ N L LT+
Sbjct: 32 ASVPAGIPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 199 LTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGN 231
LT L L NQ+ IP+ F NL+ L + L N
Sbjct: 90 LTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNN 122
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185
+L IL L HNNLT T + L N LVE+ LS + L + + RL L +S+N L
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 186 VG------PIP 190
V PIP
Sbjct: 291 VALNLYGQPIP 301
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 696 NILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK 737
N+ L+ + G+FG+AR+LN D GT Y++P +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQ 187
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185
+L IL L HNNLT T + L N LVE+ LS + L + + RL L +S+N L
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 186 VG------PIP 190
V PIP
Sbjct: 285 VALNLYGQPIP 295
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNL----------NNLVELYLSRSNLNGPIPS 167
PS L L ILDLS+NN+ L L NNL L+ R+N GP+ +
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLW-KRANPGGPV-N 530
Query: 168 TLGHLTRLSILDLSSNSLVGPIPF-TLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226
L L+ L IL+L SN L IP +L +L ++ L N +N P F + L+ +
Sbjct: 531 FLKGLSHLHILNLESNGL-DEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSL 589
Query: 227 DLSGN 231
+L N
Sbjct: 590 NLQKN 594
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%)
Query: 130 LDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPI 189
L+L N L L L +L LS++ + LT+L+IL L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 190 PFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231
LTQL L L +NQ+ F L L+++ L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N L L L L TL L N +
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N L L L L TL L N +
Sbjct: 158 NDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 117 IPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176
+P EI + L LDL +N+++ L +L L L + ++ L +L
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
L +S N LV IP L + L L++ N+I F LR++ +++ GN L
Sbjct: 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N+L L L L TL L N +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N L L L L TL L N +
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N+L L L L TL L N +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N+L L L L TL L N +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL---TRLSILD 179
LS LQ+L L+HN L P +L L L L+ + L + L H L ILD
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-----TVLSHNDLPANLEILD 532
Query: 180 LSSNSLVGPIP 190
+S N L+ P P
Sbjct: 533 ISRNQLLAPNP 543
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 62 DHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEI 121
D +AG+ S+ + LS +G L+ F +L+ + Y+ I+
Sbjct: 256 DQNTFAGLA---RSSVRHLDLS--HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181
L LQ+L+LS+N L S L + + L ++++ T L +L LDL
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 182 SNSL 185
N+L
Sbjct: 371 DNAL 374
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL-TNLIYLDLSL 374
L+ L L L N +N P +L L + ++SN+L L+ DL NL LD+S
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL---TVLSHNDLPANLEILDISR 535
Query: 375 NQLSGPIPSTF 385
NQL P P F
Sbjct: 536 NQLLAPNPDVF 546
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N+L L L L TL L N +
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 99 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 158
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N+L L L L TL L N +
Sbjct: 159 NNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N L L L L TL L N +
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%)
Query: 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182
L L +LD+S N LT L L L ELYL + L P L +L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 183 NSLVGPIPFTLGHLTQLTTLKLFSNQI 209
N L L L L TL L N +
Sbjct: 158 NQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 38/159 (23%)
Query: 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR- 158
PNL S + + I+ P I L + L L+ N LT P L NL NL L+L
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 159 ------------------------SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG 194
S++NG L HL +L L L +N + L
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITDIT--VLS 173
Query: 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233
LT+L TL L NQI+ +PL L L+ + LS N +
Sbjct: 174 RLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI 210
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 203
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 310 PPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLI 368
P + S LT L L ++ IG L L++++++ N + +P +LTNL+
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 369 YLDLSLNQL 377
++DLS N +
Sbjct: 152 HVDLSYNYI 160
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 97 FSCFPNLESF---RIWYSNISGNIPSEIGALSKLQILDLSHNNLT-GTIPSKLGNLNNLV 152
FS F +LE I Y+N + L+ L L ++ N+ T+ + N NL
Sbjct: 412 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 471
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
L LS+ L L RL +L++S N+L+ L L+TL N+I
Sbjct: 472 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 310 PPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-PIPLTIGDLTNLI 368
P + S LT L L ++ IG L L++++++ N + +P +LTNL+
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 369 YLDLSLNQL 377
++DLS N +
Sbjct: 157 HVDLSYNYI 165
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 97 FSCFPNLESF---RIWYSNISGNIPSEIGALSKLQILDLSHNNLT-GTIPSKLGNLNNLV 152
FS F +LE I Y+N + L+ L L ++ N+ T+ + N NL
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 153 ELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQI 209
L LS+ L L RL +L++S N+L+ L L+TL N+I
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 118 PSEIGALSKLQILDLSHNNL--TGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL-TR 174
P+ +LS LQ+L++SHNN T P K LN+L L S +++ L H +
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 175 LSILDLSSNSLV 186
L+ L+L+ N
Sbjct: 250 LAFLNLTQNDFA 261
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSR 158
C ++ES + S S +++Q LDL+ +L G +PS + +N+L +L L+
Sbjct: 251 CDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNA 309
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPI-PFTLGHLTQLTTLKLFSNQING--CIPL 215
++ + L L + N + L L L L L + I C L
Sbjct: 310 NSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL 369
Query: 216 DFGNLRHLKEVDLSGNK 232
NLRHL+ ++LS N+
Sbjct: 370 QLKNLRHLQYLNLSYNE 386
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 130 LDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN--GPIPSTLGHLTRLSILDLSSNSLV- 186
LD S+N LT T+ G+L L L L + L I + L LD+S NS+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 187 ----GPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235
G +T L+ + + ++ I C+P +K +DL NK+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------PRIKVLDLHSNKIKS 435
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
S++NG L HL +L L L +N + L LT+L TL L NQI+ +PL
Sbjct: 122 SDING-----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--A 172
Query: 219 NLRHLKEVDLSGNKL 233
L L+ + LS N +
Sbjct: 173 GLTKLQNLYLSKNHI 187
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
S++NG L HL +L L L +N + L LT+L TL L NQI+ +PL
Sbjct: 125 SDING-----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--A 175
Query: 219 NLRHLKEVDLSGNKL 233
L L+ + LS N +
Sbjct: 176 GLTKLQNLYLSKNHI 190
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175
+IPS G ++ LDLS+N +T S L NL L L+ + +N + L L
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
LDLS N L L+ LT L L N
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYL 156
F P+L + + ++G P+ S +Q L L N + L+ L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 157 SRSNLNGPIPSTLGHLTRLSILDLSSN 183
+ ++ +P + HL L+ L+L+SN
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 695 NNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAP 735
NI L + G+FG+AR+LNS GT Y++P
Sbjct: 154 QNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSP 194
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 28/100 (28%)
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL--- 215
S++NG L HL +L L L +N + L LT+L TL L NQI +PL
Sbjct: 123 SDING-----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPLARL 175
Query: 216 --------------DFGNLRHLKEVDL----SGNKLNGPI 237
D LR LK +D+ S LN PI
Sbjct: 176 TKLQNLYLSKNHISDLRALRGLKNLDVLELFSQEALNKPI 215
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 181
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
S++NG L HL +L L L +N + L LT+L TL L NQI+ +PL
Sbjct: 123 SDING-----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--A 173
Query: 219 NLRHLKEVDLSGNKL 233
L L+ + LS N +
Sbjct: 174 GLTKLQNLYLSKNHI 188
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 115 GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTR 174
+IPS G ++ LDLS+N +T S L NL L L+ + +N + L
Sbjct: 18 NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 175 LSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207
L LDLS N L L+ LT L L N
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 168 TLGHLTRLSILDLSSNSLVGPIPF-TLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEV 226
T HL L IL LS N LV I L L TL+LF N++ F L L+E+
Sbjct: 54 TFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 227 DLSGN 231
L N
Sbjct: 113 WLRNN 117
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG 218
S++NG L HL +L L L +N + L LT+L TL L NQI+ +PL
Sbjct: 125 SDING-----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--A 175
Query: 219 NLRHLKEVDLSGNKL 233
L L+ + LS N +
Sbjct: 176 GLTKLQNLYLSKNHI 190
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 313 LSHLTRLTTLKLFSNQINGSIPL-GIGNLENL 343
LS LT+L TL L NQI+ +PL G+ L+NL
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 178
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 87 GIRGKLDQFNFSCFPNLESFRIWYSNI---SGNIPSEIGALSKLQILDLSHNNLTGTI-- 141
G RG + FP L+ + + + SG + A +LQ LDLSHN+L
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 142 -----PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185
PS+L +LN LS + L +P G +LS+LDLS N L
Sbjct: 247 PSCDWPSQLNSLN------LSFTGLKQ-VPK--GLPAKLSVLDLSYNRL 286
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 84 GVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-P 142
G G+ L F NL +G + A + LDLSHN+L T+ P
Sbjct: 183 GERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242
Query: 143 SKLGNL--NNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL-VGPIPFTLGHLTQL 199
S + + L L LS + L +P G +L +LDLSSN L P P L + L
Sbjct: 243 SAPRCMWSSALNSLNLSFAGLEQ-VPK--GLPAKLRVLDLSSNRLNRAPQPDELPEVDNL 299
Query: 200 T 200
T
Sbjct: 300 T 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,747,048
Number of Sequences: 62578
Number of extensions: 809873
Number of successful extensions: 2810
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 604
length of query: 818
length of database: 14,973,337
effective HSP length: 107
effective length of query: 711
effective length of database: 8,277,491
effective search space: 5885296101
effective search space used: 5885296101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)