Query 003465
Match_columns 818
No_of_seqs 922 out of 5642
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 02:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.5E-68 2.2E-72 634.7 37.5 536 34-577 7-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 6E-54 2.1E-58 513.7 36.1 458 97-562 73-715 (768)
3 4eco_A Uncharacterized protein 100.0 6.2E-53 2.1E-57 493.4 22.3 472 38-543 29-601 (636)
4 3t6q_A CD180 antigen; protein- 100.0 4.3E-50 1.5E-54 469.6 42.6 466 76-565 34-561 (606)
5 4ecn_A Leucine-rich repeat pro 100.0 6E-50 2E-54 475.1 28.9 465 36-547 266-845 (876)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-48 8.1E-53 461.1 42.4 482 75-565 25-623 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.5E-48 5E-53 456.7 38.4 428 102-547 34-518 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-48 8E-53 470.2 37.6 482 64-565 14-561 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3E-48 1E-52 454.0 35.6 459 75-565 32-559 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-46 1.9E-50 440.8 42.3 440 101-547 25-553 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-46 6.5E-51 438.7 35.1 436 101-564 32-534 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 2.9E-46 1E-50 434.0 33.7 442 75-547 28-536 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-46 1.5E-50 450.3 33.2 451 100-565 23-540 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-46 1.4E-50 430.6 29.9 456 63-565 3-511 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.2E-45 4E-50 428.9 31.5 437 101-565 28-532 (570)
16 4eco_A Uncharacterized protein 100.0 6E-47 2E-51 442.8 19.7 433 101-565 81-601 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 2E-45 7E-50 436.3 26.7 434 101-565 323-841 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-44 1.1E-48 411.7 20.5 411 101-546 21-485 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 3E-43 1E-47 406.7 27.1 429 103-564 7-486 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.6E-48 407.4 20.5 426 104-565 3-482 (520)
21 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.9E-45 375.6 30.4 354 101-454 30-412 (455)
22 4g8a_A TOLL-like receptor 4; l 100.0 7.7E-40 2.6E-44 385.1 35.3 436 102-565 53-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5E-45 384.6 27.9 412 101-547 52-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 5.1E-40 1.7E-44 370.3 29.6 382 104-547 13-413 (455)
25 1jl5_A Outer protein YOPM; leu 100.0 4.9E-39 1.7E-43 359.4 32.5 377 99-547 9-416 (454)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-38 1.3E-42 370.6 31.8 422 116-565 45-556 (635)
27 1jl5_A Outer protein YOPM; leu 100.0 9.8E-38 3.3E-42 348.9 31.4 390 92-547 26-434 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-37 5.2E-42 359.2 33.1 421 66-523 43-515 (562)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-37 5.5E-42 347.5 28.7 358 96-549 37-394 (457)
30 1o6v_A Internalin A; bacterial 100.0 1.3E-36 4.5E-41 342.9 34.6 346 99-481 44-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-37 1.5E-41 343.8 27.7 353 75-525 42-394 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.9E-36 9.8E-41 340.1 33.2 347 122-543 43-389 (466)
33 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-37 4.8E-42 331.1 15.5 290 35-352 2-302 (313)
34 2id5_A Lingo-1, leucine rich r 100.0 9E-36 3.1E-40 337.5 28.1 301 101-425 32-332 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 1.1E-35 3.8E-40 336.8 27.0 324 104-454 14-337 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2E-34 6.8E-39 317.5 29.0 312 99-452 43-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.4E-34 8.2E-39 334.3 29.5 313 99-453 49-361 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 1.7E-33 5.7E-38 310.1 27.7 332 148-565 44-375 (390)
39 4fmz_A Internalin; leucine ric 100.0 4.6E-33 1.6E-37 301.6 29.2 307 97-450 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.6E-38 326.7 27.8 332 148-565 50-381 (597)
41 4fmz_A Internalin; leucine ric 100.0 7.3E-33 2.5E-37 300.0 28.0 302 76-426 45-346 (347)
42 1xku_A Decorin; proteoglycan, 100.0 5.4E-31 1.8E-35 283.0 28.8 295 102-424 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 4E-31 1.4E-35 284.2 26.8 294 102-424 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-31 1.6E-35 283.7 26.5 289 125-448 33-331 (332)
45 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-32 1.3E-36 289.2 17.0 250 270-565 51-305 (313)
46 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.7E-35 280.6 28.4 290 125-448 31-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 5E-35 1.7E-39 330.1 -14.9 350 101-450 3-411 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2E-34 6.7E-39 325.2 -11.6 388 125-543 3-441 (461)
49 4fcg_A Uncharacterized protein 100.0 7.3E-31 2.5E-35 280.9 12.9 282 35-353 23-313 (328)
50 2z80_A TOLL-like receptor 2, v 100.0 7.8E-29 2.7E-33 268.8 18.2 286 60-380 26-316 (353)
51 3ogk_B Coronatine-insensitive 100.0 1.7E-31 5.9E-36 311.2 -8.2 404 97-521 69-529 (592)
52 2z66_A Variable lymphocyte rec 100.0 8.7E-29 3E-33 262.8 13.3 250 64-330 7-261 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.8E-33 265.6 16.3 276 100-402 30-314 (353)
54 2z66_A Variable lymphocyte rec 100.0 3.7E-28 1.3E-32 257.9 16.3 227 150-377 29-260 (306)
55 4fcg_A Uncharacterized protein 100.0 1.6E-27 5.6E-32 254.8 19.8 236 123-378 79-314 (328)
56 3ogk_B Coronatine-insensitive 100.0 3.9E-31 1.3E-35 308.2 -9.2 406 118-544 66-528 (592)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-27 7.7E-32 249.1 17.7 206 101-330 32-238 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 1.8E-26 6.3E-31 258.8 25.4 106 101-206 75-180 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 2.6E-26 8.8E-31 256.7 25.7 227 101-352 64-290 (440)
60 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-27 2.5E-31 245.2 19.0 254 152-433 14-268 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 5.4E-26 1.8E-30 255.0 26.1 247 127-401 56-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 9.4E-26 3.2E-30 252.1 26.3 245 127-400 45-290 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-25 1.9E-29 253.0 29.8 265 102-458 41-305 (622)
64 1wwl_A Monocyte differentiatio 99.9 3.4E-28 1.1E-32 258.7 2.1 245 101-379 43-310 (312)
65 1wwl_A Monocyte differentiatio 99.9 6.3E-28 2.1E-32 256.6 3.6 256 121-403 39-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-24 6.4E-29 248.6 31.8 268 125-490 40-307 (622)
67 2o6q_A Variable lymphocyte rec 99.9 8.4E-25 2.9E-29 227.4 25.1 217 61-306 2-218 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.9E-32 255.2 3.4 257 103-397 12-270 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-27 4.3E-32 254.9 3.2 269 125-431 10-281 (317)
70 2p1m_B Transport inhibitor res 99.9 9.2E-30 3.2E-34 296.7 -22.2 405 97-542 62-519 (594)
71 3oja_A Leucine-rich immune mol 99.9 4.4E-26 1.5E-30 257.1 8.3 217 124-354 33-250 (487)
72 3oja_A Leucine-rich immune mol 99.9 8.2E-26 2.8E-30 254.9 8.7 238 146-421 31-270 (487)
73 2p1m_B Transport inhibitor res 99.9 6E-28 2E-32 281.4 -13.3 405 120-561 61-516 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.3E-28 219.3 19.5 204 102-306 29-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.3E-28 218.1 19.9 133 126-258 29-162 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.9E-22 6.6E-27 209.5 25.7 202 126-330 17-218 (270)
77 3rfs_A Internalin B, repeat mo 99.9 7.2E-24 2.5E-28 220.5 14.4 207 121-338 37-243 (272)
78 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.5E-28 218.5 14.4 229 123-364 17-245 (272)
79 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.7E-27 211.3 22.0 204 96-306 5-208 (290)
80 1p9a_G Platelet glycoprotein I 99.9 4.4E-22 1.5E-26 208.6 22.0 202 121-329 6-207 (290)
81 3m19_A Variable lymphocyte rec 99.9 4.7E-22 1.6E-26 204.1 20.5 190 62-282 3-192 (251)
82 3goz_A Leucine-rich repeat-con 99.9 5.5E-24 1.9E-28 231.2 -0.5 259 178-456 3-303 (362)
83 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.7E-28 226.8 3.3 266 250-546 3-301 (362)
84 2ca6_A RAN GTPase-activating p 99.9 6.1E-24 2.1E-28 233.2 -1.0 245 261-545 24-319 (386)
85 2ca6_A RAN GTPase-activating p 99.9 7E-24 2.4E-28 232.7 -1.5 244 116-381 23-319 (386)
86 4glp_A Monocyte differentiatio 99.9 3.6E-22 1.2E-26 212.0 11.8 198 151-354 93-307 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6.1E-26 198.3 15.2 178 102-282 32-218 (239)
88 2ast_B S-phase kinase-associat 99.9 1.5E-23 5.1E-28 225.6 -0.3 197 103-303 49-257 (336)
89 4glp_A Monocyte differentiatio 99.9 7.8E-22 2.7E-26 209.3 12.6 227 99-331 62-308 (310)
90 3m19_A Variable lymphocyte rec 99.9 1.7E-20 5.9E-25 192.5 22.1 181 125-308 14-194 (251)
91 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8.3E-26 197.3 14.5 198 125-328 31-237 (239)
92 2ast_B S-phase kinase-associat 99.9 8.6E-23 2.9E-27 219.7 3.4 224 198-447 48-282 (336)
93 1h6u_A Internalin H; cell adhe 99.9 5.3E-21 1.8E-25 202.4 16.6 193 98-330 38-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 3.7E-21 1.3E-25 203.6 15.4 212 125-354 19-230 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.3E-25 187.6 16.1 181 63-266 6-186 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.5E-24 194.9 19.7 199 128-330 12-215 (350)
97 2o6s_A Variable lymphocyte rec 99.8 2E-19 6.9E-24 178.8 17.8 181 104-294 10-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.8E-19 6.3E-24 194.5 18.4 221 101-350 30-255 (350)
99 4gt4_A Tyrosine-protein kinase 99.8 2.1E-21 7.2E-26 203.6 2.3 114 694-807 173-304 (308)
100 4aoj_A High affinity nerve gro 99.8 5E-21 1.7E-25 202.7 3.7 116 694-809 186-319 (329)
101 3cvr_A Invasion plasmid antige 99.8 5.4E-19 1.9E-23 200.6 17.9 194 102-340 60-253 (571)
102 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.3E-23 196.3 19.8 186 222-459 60-252 (571)
103 4asz_A BDNF/NT-3 growth factor 99.8 1.8E-20 6.2E-25 195.6 2.6 115 694-808 156-288 (299)
104 3e6j_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 172.4 17.7 158 60-234 15-172 (229)
105 1m9s_A Internalin B; cell inva 99.8 8.4E-19 2.9E-23 201.4 13.0 187 104-306 24-210 (605)
106 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 200.7 13.3 193 123-331 19-211 (605)
107 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.6E-23 181.0 13.6 106 217-330 108-213 (291)
108 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.4E-23 181.1 13.4 170 99-282 44-213 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 1.4E-17 4.8E-22 166.7 16.7 133 101-233 32-164 (220)
110 3omv_A RAF proto-oncogene seri 99.7 6.8E-19 2.3E-23 183.6 6.9 115 694-808 160-299 (307)
111 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 166.1 16.6 150 104-256 14-163 (220)
112 2xot_A Amphoterin-induced prot 99.7 6E-18 2.1E-22 183.3 13.4 156 126-281 40-201 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 165.7 15.6 131 103-233 34-165 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 7.9E-22 165.1 15.8 152 104-258 14-166 (220)
115 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6E-22 179.6 15.3 129 128-259 21-150 (361)
116 3e6j_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 163.0 18.1 152 104-259 22-173 (229)
117 3hmm_A TGF-beta receptor type- 99.7 8E-19 2.7E-23 184.5 4.2 115 694-808 136-296 (303)
118 4ezg_A Putative uncharacterize 99.7 2.5E-17 8.6E-22 162.0 11.5 152 122-281 41-193 (197)
119 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 162.9 9.9 155 97-259 40-195 (197)
120 4ase_A Vascular endothelial gr 99.7 2.9E-18 9.8E-23 183.0 3.5 112 694-808 213-346 (353)
121 4fih_A Serine/threonine-protei 99.7 1.3E-17 4.6E-22 176.1 7.3 152 650-802 76-323 (346)
122 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 168.7 9.7 169 123-306 17-185 (263)
123 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 168.6 9.5 171 99-284 17-187 (263)
124 4b8c_D Glucose-repressible alc 99.7 2.6E-18 8.9E-23 202.5 1.0 185 39-239 132-334 (727)
125 1dce_A Protein (RAB geranylger 99.7 8.2E-20 2.8E-24 208.6 -11.8 187 122-331 346-547 (567)
126 1dce_A Protein (RAB geranylger 99.7 8E-20 2.7E-24 208.7 -12.1 204 97-323 345-566 (567)
127 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.5E-22 196.5 5.9 228 269-546 173-408 (727)
128 4b9d_A Serine/threonine-protei 99.7 4.6E-18 1.6E-22 180.0 0.3 154 649-802 25-276 (350)
129 3uim_A Brassinosteroid insensi 99.7 1.8E-16 6.2E-21 169.3 11.1 171 635-808 17-310 (326)
130 4fie_A Serine/threonine-protei 99.7 9.7E-17 3.3E-21 173.9 8.6 152 650-802 153-400 (423)
131 2qkw_B Protein kinase; three-h 99.6 6.1E-17 2.1E-21 172.6 5.1 169 637-808 28-314 (321)
132 3sb4_A Hypothetical leucine ri 99.6 1E-16 3.5E-21 171.3 5.5 102 340-443 225-327 (329)
133 2ell_A Acidic leucine-rich nuc 99.6 9.7E-16 3.3E-20 146.4 10.9 133 100-234 23-160 (168)
134 4g3f_A NF-kappa-beta-inducing 99.6 1.4E-16 4.9E-21 167.8 5.5 114 694-807 178-314 (336)
135 3sb4_A Hypothetical leucine ri 99.6 1.5E-16 5.1E-21 170.1 5.4 102 316-419 225-327 (329)
136 1w8a_A SLIT protein; signaling 99.6 2.8E-15 9.7E-20 146.5 13.9 109 126-234 30-139 (192)
137 3hyh_A Carbon catabolite-derep 99.6 1.4E-16 4.8E-21 163.4 4.1 153 648-802 13-262 (275)
138 4aw0_A HPDK1, 3-phosphoinositi 99.6 1E-16 3.5E-21 166.8 2.6 152 648-800 32-282 (311)
139 1w8a_A SLIT protein; signaling 99.6 3.9E-15 1.3E-19 145.4 13.8 130 128-260 11-141 (192)
140 4g31_A Eukaryotic translation 99.6 2.5E-16 8.4E-21 164.6 5.1 114 694-807 146-286 (299)
141 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 144.7 9.5 133 124-258 23-160 (168)
142 3fpq_A Serine/threonine-protei 99.6 6.6E-16 2.3E-20 159.8 7.1 107 694-802 159-282 (290)
143 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 143.0 7.6 128 100-229 16-148 (149)
144 3ubd_A Ribosomal protein S6 ki 99.6 3.6E-16 1.2E-20 162.6 3.6 103 694-797 154-271 (304)
145 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.6E-19 138.6 14.4 111 101-211 28-138 (177)
146 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 7.7E-20 140.7 6.7 129 123-253 15-148 (149)
147 2wfh_A SLIT homolog 2 protein 99.6 2.5E-14 8.5E-19 139.7 14.2 106 126-232 32-137 (193)
148 2wfh_A SLIT homolog 2 protein 99.6 3E-14 1E-18 139.1 14.7 127 128-258 13-139 (193)
149 2nru_A Interleukin-1 receptor- 99.6 7.6E-15 2.6E-19 155.2 11.3 169 636-809 13-306 (307)
150 4fdw_A Leucine rich hypothetic 99.5 3E-13 1E-17 147.5 22.2 269 125-425 113-382 (401)
151 2o6r_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 134.6 15.0 109 150-258 29-137 (177)
152 4fdw_A Leucine rich hypothetic 99.5 3.4E-13 1.2E-17 147.1 22.1 267 98-401 110-382 (401)
153 4fs7_A Uncharacterized protein 99.5 4.9E-13 1.7E-17 146.5 21.9 330 93-441 63-392 (394)
154 2c30_A Serine/threonine-protei 99.5 1.3E-14 4.5E-19 154.3 8.5 167 636-803 23-295 (321)
155 1a9n_A U2A', U2A'; complex (nu 99.5 6.5E-14 2.2E-18 134.7 7.3 131 97-233 15-152 (176)
156 4b99_A Mitogen-activated prote 99.4 5.4E-14 1.8E-18 152.7 7.1 54 694-747 186-248 (398)
157 1qcf_A Haematopoetic cell kina 99.4 3.1E-14 1.1E-18 159.1 5.2 160 648-811 188-446 (454)
158 3kul_A Ephrin type-A receptor 99.4 2.3E-14 7.8E-19 152.7 2.8 116 694-809 179-313 (325)
159 3s95_A LIMK-1, LIM domain kina 99.4 3.7E-14 1.2E-18 150.2 4.2 158 650-807 12-280 (310)
160 4fs7_A Uncharacterized protein 99.4 4.2E-12 1.4E-16 139.1 20.1 316 114-446 60-375 (394)
161 3p1a_A MYT1 kinase, membrane-a 99.4 2.3E-14 7.7E-19 151.8 1.6 105 694-802 185-304 (311)
162 4f9c_A Cell division cycle 7-r 99.4 9.2E-14 3.2E-18 149.2 5.9 54 694-747 145-232 (361)
163 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.7E-18 130.2 8.7 131 315-450 17-153 (176)
164 1ds9_A Outer arm dynein; leuci 99.4 2.9E-16 1E-20 154.5 -12.8 128 102-234 19-153 (198)
165 3gxj_A TGF-beta receptor type- 99.4 2.1E-13 7.1E-18 143.7 8.2 117 694-810 136-298 (303)
166 1fmk_A C-SRC, P60-SRC, tyrosin 99.4 1.3E-13 4.5E-18 153.8 6.8 159 649-808 185-439 (452)
167 3cbl_A C-FES, proto-oncogene t 99.4 7.8E-14 2.7E-18 151.9 4.3 157 649-808 115-373 (377)
168 3fxz_A Serine/threonine-protei 99.4 2.9E-13 1E-17 142.2 8.4 107 694-802 144-269 (297)
169 2qol_A Ephrin receptor; recept 99.4 5.6E-14 1.9E-18 152.6 2.8 111 694-807 175-307 (373)
170 1opk_A P150, C-ABL, proto-onco 99.4 1.1E-13 3.8E-18 156.2 4.6 157 649-809 221-478 (495)
171 1ds9_A Outer arm dynein; leuci 99.4 6.8E-16 2.3E-20 151.8 -11.9 132 121-257 14-152 (198)
172 3ugc_A Tyrosine-protein kinase 99.4 4.3E-14 1.5E-18 148.5 0.9 112 694-808 142-290 (295)
173 3p86_A Serine/threonine-protei 99.4 1.5E-13 5.1E-18 145.2 4.6 114 694-807 167-296 (309)
174 2psq_A Fibroblast growth facto 99.4 3.4E-13 1.2E-17 146.3 6.8 114 694-807 231-362 (370)
175 3sxs_A Cytoplasmic tyrosine-pr 99.4 2.6E-13 9E-18 140.2 5.5 116 694-809 132-264 (268)
176 4hcu_A Tyrosine-protein kinase 99.4 1.6E-13 5.4E-18 142.0 3.8 115 694-808 134-265 (269)
177 3g39_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 121.6 12.9 84 150-233 31-114 (170)
178 3g39_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 121.5 13.0 106 104-212 12-117 (170)
179 1k9a_A Carboxyl-terminal SRC k 99.4 2.6E-13 9E-18 151.2 5.7 112 694-808 317-444 (450)
180 3poz_A Epidermal growth factor 99.4 1.2E-13 4.2E-18 147.3 2.7 111 694-807 145-276 (327)
181 3q4u_A Activin receptor type-1 99.4 1.1E-12 3.7E-17 138.1 9.6 114 694-807 141-300 (301)
182 3lxl_A Tyrosine-protein kinase 99.4 3.1E-13 1.1E-17 144.2 5.2 112 694-808 155-302 (327)
183 2r9u_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 120.3 13.0 104 104-210 15-118 (174)
184 3soc_A Activin receptor type-2 99.3 4.1E-13 1.4E-17 142.9 5.2 115 694-808 159-317 (322)
185 3fe3_A MAP/microtubule affinit 99.3 3.6E-13 1.2E-17 143.3 4.6 108 694-803 142-265 (328)
186 2r9u_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 120.3 12.8 105 128-235 15-119 (174)
187 3niz_A Rhodanese family protei 99.3 7.4E-13 2.5E-17 140.1 6.8 43 694-736 147-189 (311)
188 3o0g_A Cell division protein k 99.3 1.6E-12 5.4E-17 136.2 8.7 43 694-736 129-171 (292)
189 2h8h_A Proto-oncogene tyrosine 99.3 4.7E-13 1.6E-17 152.5 4.7 159 649-808 268-522 (535)
190 2ozo_A Tyrosine-protein kinase 99.3 5.3E-13 1.8E-17 154.3 4.6 114 694-807 464-596 (613)
191 3l9p_A Anaplastic lymphoma kin 99.3 6.6E-13 2.3E-17 143.9 5.0 114 694-807 209-343 (367)
192 3gen_A Tyrosine-protein kinase 99.3 5.6E-13 1.9E-17 138.9 4.2 155 649-807 25-278 (283)
193 3uto_A Twitchin; kinase, muscl 99.3 7.4E-13 2.5E-17 151.2 5.5 153 648-802 157-410 (573)
194 3zgw_A Maternal embryonic leuc 99.3 4.9E-13 1.7E-17 143.2 3.8 108 694-802 136-260 (347)
195 3c1x_A Hepatocyte growth facto 99.3 6.8E-13 2.3E-17 143.9 4.9 114 694-807 220-353 (373)
196 3kex_A Receptor tyrosine-prote 99.3 6E-13 2E-17 141.8 4.2 115 694-808 143-275 (325)
197 3qup_A Tyrosine-protein kinase 99.3 7.9E-13 2.7E-17 140.7 5.1 114 694-807 165-296 (323)
198 4fl3_A Tyrosine-protein kinase 99.3 4.9E-13 1.7E-17 155.0 3.8 111 694-807 497-629 (635)
199 4e5w_A Tyrosine-protein kinase 99.3 7E-13 2.4E-17 139.6 4.1 114 694-807 154-300 (302)
200 3tt0_A Basic fibroblast growth 99.3 8.7E-13 3E-17 143.9 5.0 114 694-807 219-350 (382)
201 3dls_A PAS domain-containing s 99.3 2.7E-12 9.4E-17 137.1 8.8 104 694-803 158-275 (335)
202 1ob3_A PFPK5, cell division co 99.3 1.2E-12 4.2E-17 136.8 5.9 43 694-736 128-170 (288)
203 3v5w_A G-protein coupled recep 99.3 5.9E-13 2E-17 151.1 3.6 105 694-801 320-448 (689)
204 3h4j_B AMPK kdaid, SNF1-like p 99.3 1.6E-12 5.5E-17 138.6 6.8 107 694-802 136-258 (336)
205 1o6l_A RAC-beta serine/threoni 99.3 1.3E-12 4.3E-17 139.6 5.7 104 694-802 133-260 (337)
206 1mp8_A Focal adhesion kinase 1 99.3 9.8E-13 3.4E-17 137.0 4.5 114 694-807 144-274 (281)
207 4hgt_A Casein kinase I isoform 99.3 7.9E-13 2.7E-17 138.7 3.8 114 694-807 133-278 (296)
208 1luf_A Muscle-specific tyrosin 99.3 1E-12 3.4E-17 141.2 4.2 118 694-811 202-337 (343)
209 3t9t_A Tyrosine-protein kinase 99.3 8.9E-13 3.1E-17 136.1 3.5 115 694-808 132-263 (267)
210 1qpc_A LCK kinase; alpha beta 99.3 7.4E-13 2.5E-17 137.7 2.9 114 694-807 137-267 (279)
211 3uzp_A CKI-delta, CKID, casein 99.3 8.4E-13 2.9E-17 138.6 3.4 114 694-807 133-278 (296)
212 4f0f_A Serine/threonine-protei 99.3 4.1E-12 1.4E-16 132.7 8.3 108 694-807 152-287 (287)
213 1csn_A Casein kinase-1; phosph 99.3 1.4E-12 4.7E-17 137.1 4.7 114 694-807 134-281 (298)
214 2zv2_A Calcium/calmodulin-depe 99.3 1.7E-12 5.8E-17 136.4 5.2 106 694-802 165-292 (298)
215 3mdy_A Bone morphogenetic prot 99.3 5.8E-12 2E-16 134.8 9.3 116 694-809 170-331 (337)
216 3ll6_A Cyclin G-associated kin 99.3 1.9E-12 6.5E-17 138.6 5.3 111 694-807 166-306 (337)
217 1ua2_A CAK, cell division prot 99.3 3.8E-12 1.3E-16 136.8 7.7 43 694-736 140-182 (346)
218 1mqb_A Ephrin type-A receptor 99.3 2E-12 6.8E-17 138.2 5.4 114 694-807 175-307 (333)
219 3kfa_A Tyrosine-protein kinase 99.3 2E-12 6.9E-17 135.1 5.3 111 694-807 139-269 (288)
220 3sv0_A Casein kinase I-like; t 99.3 2.2E-12 7.5E-17 144.2 5.6 114 694-807 131-276 (483)
221 3cok_A Serine/threonine-protei 99.3 2.3E-12 7.8E-17 133.9 5.4 108 694-802 140-262 (278)
222 1byg_A CSK, protein (C-termina 99.3 2.8E-12 9.6E-17 133.2 6.0 112 694-808 145-272 (278)
223 3f66_A Hepatocyte growth facto 99.3 2.4E-12 8.1E-17 135.3 5.4 114 694-807 156-289 (298)
224 3dtc_A Mitogen-activated prote 99.3 1.7E-12 5.9E-17 134.3 4.2 109 694-807 136-271 (271)
225 2izr_A Casein kinase I isoform 99.3 2.6E-12 8.8E-17 137.2 5.7 112 694-807 133-279 (330)
226 2w1i_A JAK2; chromosomal rearr 99.3 2.8E-12 9.6E-17 136.7 5.8 112 694-808 173-321 (326)
227 3cc6_A Protein tyrosine kinase 99.3 1.9E-12 6.4E-17 134.8 4.3 112 694-808 141-272 (281)
228 3lxp_A Non-receptor tyrosine-p 99.3 1.1E-12 3.7E-17 139.3 2.5 111 694-807 162-308 (318)
229 3soa_A Calcium/calmodulin-depe 99.3 4.4E-12 1.5E-16 140.5 7.5 155 647-802 10-267 (444)
230 4agu_A Cyclin-dependent kinase 99.3 4.4E-12 1.5E-16 134.1 7.2 43 694-736 130-172 (311)
231 3lzb_A Epidermal growth factor 99.3 1.6E-12 5.5E-17 138.5 3.7 111 694-807 145-276 (327)
232 3g2f_A Bone morphogenetic prot 99.3 1.3E-12 4.4E-17 139.9 2.9 113 694-807 148-316 (336)
233 3dbq_A Dual specificity protei 99.3 1.9E-12 6.6E-17 139.0 4.2 106 694-803 136-274 (343)
234 2wqm_A Serine/threonine-protei 99.3 1.7E-12 6E-17 137.2 3.8 111 694-807 164-295 (310)
235 3og7_A AKAP9-BRAF fusion prote 99.3 1.2E-12 4.2E-17 136.9 2.5 116 694-809 148-288 (289)
236 4gt6_A Cell surface protein; l 99.3 7E-10 2.4E-14 121.3 24.6 331 93-449 55-390 (394)
237 3lb7_A RAF proto-oncogene seri 99.2 3E-12 1E-16 135.1 5.4 116 694-809 160-300 (307)
238 3g33_A Cell division protein k 99.2 7E-12 2.4E-16 132.4 8.3 42 694-736 148-189 (308)
239 3qd2_B Eukaryotic translation 99.2 3.9E-12 1.3E-16 135.8 6.4 109 694-802 192-325 (332)
240 4ejn_A RAC-alpha serine/threon 99.2 2E-12 6.9E-17 144.1 4.3 108 694-802 277-404 (446)
241 2pmi_A Negative RE, cyclin-dep 99.2 6.9E-12 2.3E-16 133.0 8.1 43 694-736 136-178 (317)
242 3txo_A PKC-L, NPKC-ETA, protei 99.2 9.1E-13 3.1E-17 141.7 1.1 108 694-802 152-280 (353)
243 4eqm_A Protein kinase; transfe 99.2 2.4E-12 8.1E-17 135.0 4.1 116 694-809 139-275 (294)
244 3brb_A Proto-oncogene tyrosine 99.2 3E-12 1E-16 135.6 4.8 114 694-807 175-306 (313)
245 3pls_A Macrophage-stimulating 99.2 4.9E-12 1.7E-16 132.8 6.4 111 694-807 152-285 (298)
246 2i1m_A Macrophage colony-stimu 99.2 1.9E-12 6.5E-17 138.4 3.3 112 694-808 192-325 (333)
247 4gt6_A Cell surface protein; l 99.2 5.1E-10 1.7E-14 122.4 22.6 331 118-479 56-390 (394)
248 3pfq_A PKC-B, PKC-beta, protei 99.2 3.9E-12 1.3E-16 148.6 5.9 107 694-801 470-596 (674)
249 2zmd_A Dual specificity protei 99.2 2.7E-12 9.3E-17 140.2 4.2 105 694-802 183-320 (390)
250 3ttj_A Mitogen-activated prote 99.2 6.6E-12 2.3E-16 140.2 7.2 42 694-736 192-233 (464)
251 1b6c_B TGF-B superfamily recep 99.2 1.1E-11 3.9E-16 132.8 8.7 115 694-808 175-335 (342)
252 3rp9_A Mitogen-activated prote 99.2 4.7E-12 1.6E-16 141.7 5.7 43 694-736 184-253 (458)
253 2eue_A Carbon catabolite derep 99.2 2.4E-12 8.1E-17 133.6 2.9 107 694-802 140-262 (275)
254 1u59_A Tyrosine-protein kinase 99.2 2.6E-12 8.8E-17 134.2 3.2 114 694-807 138-270 (287)
255 4aaa_A Cyclin-dependent kinase 99.2 5.5E-12 1.9E-16 134.7 5.6 43 694-736 152-194 (331)
256 3oz6_A Mitogen-activated prote 99.2 8.3E-12 2.8E-16 136.5 7.1 43 694-736 137-200 (388)
257 2x4f_A Myosin light chain kina 99.2 5.1E-12 1.7E-16 137.1 5.4 148 653-802 94-342 (373)
258 1p4o_A Insulin-like growth fac 99.2 3.2E-12 1.1E-16 136.0 3.7 114 694-807 166-297 (322)
259 3op5_A Serine/threonine-protei 99.2 2.8E-12 9.6E-17 138.9 3.3 108 694-807 180-327 (364)
260 2r5t_A Serine/threonine-protei 99.2 3.1E-12 1.1E-16 138.5 3.6 106 694-804 167-291 (373)
261 2y7j_A Phosphorylase B kinase 99.2 2.1E-11 7.3E-16 131.8 10.2 107 694-802 228-359 (365)
262 3pg1_A Mitogen-activated prote 99.2 6.4E-12 2.2E-16 136.0 6.0 97 639-736 13-203 (362)
263 2pvf_A Fibroblast growth facto 99.2 2.5E-12 8.6E-17 137.5 2.7 111 694-807 185-316 (334)
264 1xjd_A Protein kinase C, theta 99.2 1.8E-12 6.1E-17 138.8 1.4 107 694-801 146-268 (345)
265 1u5q_A Serine/threonine protei 99.2 6.4E-12 2.2E-16 134.9 5.7 149 648-803 54-306 (348)
266 2ivs_A Proto-oncogene tyrosine 99.2 4E-12 1.4E-16 134.6 3.9 114 694-807 178-309 (314)
267 2y94_A 5'-AMP-activated protei 99.2 6.4E-12 2.2E-16 140.2 5.8 107 694-802 144-266 (476)
268 2i0e_A Protein kinase C-beta I 99.2 3.6E-12 1.2E-16 136.9 3.6 99 694-797 149-266 (353)
269 3a7i_A MST3 kinase, serine/thr 99.2 5.8E-12 2E-16 132.7 5.0 107 694-803 147-271 (303)
270 2buj_A Serine/threonine-protei 99.2 3E-12 1E-16 135.8 2.7 116 694-812 162-309 (317)
271 4dc2_A Protein kinase C IOTA t 99.2 7.5E-12 2.6E-16 136.2 5.9 43 694-736 181-223 (396)
272 3mtl_A Cell division protein k 99.2 5.1E-12 1.7E-16 134.5 4.4 43 694-736 128-170 (324)
273 3tki_A Serine/threonine-protei 99.2 6E-12 2.1E-16 133.8 4.9 107 694-803 133-262 (323)
274 3a62_A Ribosomal protein S6 ki 99.2 5.6E-12 1.9E-16 134.3 4.6 104 694-802 149-276 (327)
275 2clq_A Mitogen-activated prote 99.2 7E-12 2.4E-16 131.4 5.1 106 694-802 150-278 (295)
276 1xbb_A Tyrosine-protein kinase 99.2 3.2E-12 1.1E-16 133.8 2.6 111 694-807 145-277 (291)
277 2j0j_A Focal adhesion kinase 1 99.2 4.4E-12 1.5E-16 147.6 3.9 114 694-807 519-649 (656)
278 2eva_A TAK1 kinase - TAB1 chim 99.2 1.3E-11 4.3E-16 130.3 7.0 111 694-807 133-261 (307)
279 1t46_A HOMO sapiens V-KIT hard 99.2 6.5E-12 2.2E-16 132.9 4.7 111 694-807 173-305 (313)
280 3gbz_A Kinase, CMGC CDK; ssgci 99.2 7.7E-12 2.6E-16 133.4 5.3 43 694-736 160-207 (329)
281 2a19_B Interferon-induced, dou 99.2 6E-12 2.1E-16 131.1 4.2 110 694-811 150-276 (284)
282 3vhe_A Vascular endothelial gr 99.2 4.9E-12 1.7E-16 136.8 3.6 111 694-807 221-353 (359)
283 2yab_A Death-associated protei 99.2 2.3E-11 7.9E-16 131.0 8.7 108 694-802 143-272 (361)
284 1rjb_A FL cytokine receptor; k 99.2 6.8E-12 2.3E-16 134.8 4.4 114 694-810 200-335 (344)
285 3kvw_A DYRK2, dual specificity 99.2 1.8E-11 6E-16 135.5 7.8 40 694-736 228-269 (429)
286 2v62_A Serine/threonine-protei 99.2 1.6E-11 5.5E-16 131.8 7.2 115 694-808 179-327 (345)
287 3i6u_A CDS1, serine/threonine- 99.2 1.8E-11 6.1E-16 135.1 7.7 108 694-802 267-399 (419)
288 3c0i_A Peripheral plasma membr 99.2 6.8E-12 2.3E-16 135.0 4.2 108 694-802 158-286 (351)
289 3mi9_A Cell division protein k 99.2 2.5E-11 8.4E-16 130.8 8.6 43 694-736 152-198 (351)
290 3n9x_A Phosphotransferase; mal 99.2 8.5E-12 2.9E-16 138.3 5.1 43 694-736 157-221 (432)
291 2y0a_A Death-associated protei 99.2 2.4E-11 8.3E-16 129.3 8.3 107 694-802 142-271 (326)
292 3un9_A NLR family member X1; l 99.2 6E-13 2.1E-17 143.7 -4.5 25 501-525 235-259 (372)
293 4fvq_A Tyrosine-protein kinase 99.2 6.8E-12 2.3E-16 131.1 3.6 110 694-812 141-278 (289)
294 2rku_A Serine/threonine-protei 99.2 6.7E-12 2.3E-16 131.6 3.5 108 694-802 143-265 (294)
295 1u46_A ACK-1, activated CDC42 99.2 4.5E-12 1.5E-16 132.6 1.8 117 694-810 149-285 (291)
296 2xir_A Vascular endothelial gr 99.2 1E-11 3.5E-16 131.6 4.5 112 694-808 176-309 (316)
297 2h34_A Serine/threonine-protei 99.2 2.1E-11 7.2E-16 128.7 6.8 116 694-810 162-297 (309)
298 2jii_A Serine/threonine-protei 99.2 1.2E-11 4E-16 133.4 4.7 114 694-807 187-334 (352)
299 3dzo_A Rhoptry kinase domain; 99.2 7.6E-12 2.6E-16 137.7 3.3 99 694-801 239-362 (413)
300 3kn6_A Ribosomal protein S6 ki 99.2 7E-12 2.4E-16 133.4 2.8 109 694-802 134-270 (325)
301 2r3i_A Cell division protein k 99.2 2.3E-11 8E-16 127.7 6.7 43 694-736 131-173 (299)
302 3e3p_A Protein kinase, putativ 99.2 2.4E-11 8.4E-16 131.3 7.1 42 694-736 159-201 (360)
303 2yfx_A Tyrosine-protein kinase 99.2 1.1E-11 3.9E-16 132.0 4.4 114 694-807 168-302 (327)
304 3f3z_A Calcium/calmodulin-depe 99.2 2E-11 6.8E-16 126.7 6.1 153 648-802 9-261 (277)
305 3byv_A Rhoptry kinase; malaria 99.2 1.3E-11 4.6E-16 134.2 5.0 100 694-802 234-359 (377)
306 1cm8_A Phosphorylated MAP kina 99.2 5.1E-11 1.7E-15 128.9 9.5 40 694-736 156-195 (367)
307 3un9_A NLR family member X1; l 99.2 8E-13 2.7E-17 142.7 -4.7 138 317-454 101-256 (372)
308 2w5a_A Serine/threonine-protei 99.2 4.7E-12 1.6E-16 131.6 1.2 114 694-807 144-272 (279)
309 2bdw_A Hypothetical protein K1 99.2 1.8E-11 6E-16 132.3 5.7 155 647-803 28-285 (362)
310 1rdq_E PKA C-alpha, CAMP-depen 99.2 1.5E-11 5.2E-16 132.0 5.0 101 694-802 169-293 (350)
311 3a8x_A Protein kinase C IOTA t 99.2 1.7E-11 5.8E-16 131.4 5.3 43 694-736 138-180 (345)
312 4fr4_A YANK1, serine/threonine 99.1 1.9E-11 6.4E-16 132.6 5.6 106 694-801 143-270 (384)
313 3kk8_A Calcium/calmodulin depe 99.1 2.2E-11 7.6E-16 126.8 5.8 107 694-802 133-261 (284)
314 3a99_A Proto-oncogene serine/t 99.1 1.8E-11 6.1E-16 130.0 5.1 102 694-802 177-293 (320)
315 1kob_A Twitchin; kinase, intra 99.1 1.6E-11 5.4E-16 133.6 4.7 154 648-803 51-305 (387)
316 2owb_A Serine/threonine-protei 99.1 9.1E-12 3.1E-16 133.2 2.8 104 694-802 169-291 (335)
317 3qyz_A Mitogen-activated prote 99.1 3.2E-11 1.1E-15 130.6 6.9 43 694-736 156-201 (364)
318 3llt_A Serine/threonine kinase 99.1 3E-11 1E-15 130.6 6.7 40 694-736 165-229 (360)
319 2w4o_A Calcium/calmodulin-depe 99.1 1.4E-11 4.7E-16 132.5 3.8 107 694-802 176-305 (349)
320 3ork_A Serine/threonine protei 99.1 1.6E-11 5.6E-16 129.7 4.4 114 694-807 144-279 (311)
321 1vzo_A Ribosomal protein S6 ki 99.1 9.8E-12 3.4E-16 134.0 2.6 109 694-803 187-322 (355)
322 1fot_A TPK1 delta, CAMP-depend 99.1 2.2E-11 7.5E-16 128.9 5.0 101 694-802 134-258 (318)
323 2a2a_A Death-associated protei 99.1 8.7E-11 3E-15 124.7 9.7 108 694-802 143-272 (321)
324 1tki_A Titin; serine kinase, m 99.1 1.2E-11 4.1E-16 131.3 2.9 107 694-802 130-257 (321)
325 3hko_A Calcium/calmodulin-depe 99.1 4.9E-11 1.7E-15 128.0 7.7 108 694-802 196-330 (345)
326 3fdn_A Serine/threonine-protei 99.1 1.1E-11 3.6E-16 128.9 2.3 104 694-802 137-257 (279)
327 2fst_X Mitogen-activated prote 99.1 3.4E-11 1.2E-15 130.2 6.2 40 694-736 160-199 (367)
328 3com_A Serine/threonine-protei 99.1 3.8E-11 1.3E-15 127.1 6.4 108 694-802 153-278 (314)
329 4aw2_A Serine/threonine-protei 99.1 1.4E-11 4.6E-16 136.0 3.0 98 639-736 65-246 (437)
330 3kmu_A ILK, integrin-linked ki 99.1 2.1E-11 7.3E-16 125.9 4.3 107 694-808 141-269 (271)
331 2vx3_A Dual specificity tyrosi 99.1 5.1E-11 1.7E-15 129.8 7.3 40 694-736 187-228 (382)
332 3nsz_A CK II alpha, casein kin 99.1 5.6E-11 1.9E-15 126.7 7.5 42 694-736 158-200 (330)
333 3v8s_A RHO-associated protein 99.1 1.8E-11 6.2E-16 133.9 3.4 107 694-803 196-330 (410)
334 2h6d_A 5'-AMP-activated protei 99.1 2.5E-11 8.5E-16 125.8 4.1 108 694-803 139-262 (276)
335 3lm5_A Serine/threonine-protei 99.1 2.4E-11 8.4E-16 129.4 4.1 108 694-803 159-288 (327)
336 3c4z_A Rhodopsin kinase; Ser/T 99.1 2.3E-11 8E-16 137.3 4.1 103 694-797 317-438 (543)
337 2j7t_A Serine/threonine-protei 99.1 1.3E-11 4.5E-16 129.8 1.9 151 650-802 21-275 (302)
338 2x7f_A TRAF2 and NCK-interacti 99.1 1.4E-11 5E-16 131.1 2.2 106 694-802 157-286 (326)
339 2yex_A Serine/threonine-protei 99.1 5.8E-11 2E-15 123.0 6.7 106 694-802 133-261 (276)
340 3is5_A Calcium-dependent prote 99.1 4.9E-11 1.7E-15 124.3 6.2 104 694-802 152-278 (285)
341 2jam_A Calcium/calmodulin-depe 99.1 3.9E-11 1.3E-15 126.3 5.4 106 694-802 134-261 (304)
342 3e7e_A HBUB1, BUB1A, mitotic c 99.1 8.1E-11 2.8E-15 127.4 7.9 108 694-807 200-337 (365)
343 3uc3_A Serine/threonine-protei 99.1 6E-11 2.1E-15 128.0 6.9 106 694-803 144-275 (361)
344 2xrw_A Mitogen-activated prote 99.1 5.1E-11 1.7E-15 129.3 6.3 42 694-736 155-196 (371)
345 4exu_A Mitogen-activated prote 99.1 6.1E-11 2.1E-15 128.6 6.9 40 694-736 172-211 (371)
346 3fme_A Dual specificity mitoge 99.1 2E-11 6.8E-16 127.6 2.9 105 694-802 138-266 (290)
347 1x8b_A WEE1HU, WEE1-like prote 99.1 6.5E-11 2.2E-15 123.4 6.8 101 694-802 143-279 (289)
348 3cek_A Dual specificity protei 99.1 2.5E-11 8.5E-16 128.5 3.4 105 694-802 155-292 (313)
349 4euu_A Serine/threonine-protei 99.1 9.3E-11 3.2E-15 124.4 7.7 112 694-807 140-307 (319)
350 2b9h_A MAP kinase FUS3, mitoge 99.1 6.7E-11 2.3E-15 127.4 6.7 43 694-736 140-192 (353)
351 2ifg_A High affinity nerve gro 99.1 2E-10 6.8E-15 123.4 10.3 89 121-210 27-116 (347)
352 3aln_A Dual specificity mitoge 99.1 4.4E-11 1.5E-15 127.4 5.0 108 694-802 154-285 (327)
353 2vd5_A DMPK protein; serine/th 99.1 2.2E-11 7.4E-16 133.4 2.7 99 638-736 51-233 (412)
354 1blx_A Cyclin-dependent kinase 99.1 6.7E-11 2.3E-15 125.9 6.2 42 694-736 148-189 (326)
355 2wtk_C Serine/threonine-protei 99.1 4.9E-11 1.7E-15 125.6 5.0 109 694-803 137-264 (305)
356 1zy4_A Serine/threonine-protei 99.1 4.2E-11 1.4E-15 125.8 4.5 109 694-803 144-284 (303)
357 1nxk_A MAP kinase-activated pr 99.1 7.8E-11 2.7E-15 129.0 6.7 108 694-803 189-322 (400)
358 3eqc_A Dual specificity mitoge 99.1 4.3E-11 1.5E-15 129.3 4.5 41 694-736 160-200 (360)
359 2iwi_A Serine/threonine-protei 99.1 1.1E-10 3.7E-15 123.4 7.3 102 694-802 167-283 (312)
360 3an0_A Dual specificity mitoge 99.1 2.9E-11 9.8E-16 129.6 2.9 105 694-802 182-310 (340)
361 2ac3_A MAP kinase-interacting 99.1 1E-10 3.4E-15 123.9 6.9 43 694-736 139-191 (316)
362 3p23_A Serine/threonine-protei 99.1 1.1E-10 3.7E-15 129.1 7.4 109 694-802 146-283 (432)
363 2vwi_A Serine/threonine-protei 99.1 7.8E-11 2.7E-15 123.9 6.0 109 694-802 149-287 (303)
364 2ifg_A High affinity nerve gro 99.1 2.9E-10 1E-14 122.1 10.6 101 130-233 13-115 (347)
365 3bhy_A Death-associated protei 99.1 1.4E-10 4.7E-15 120.7 7.6 108 694-802 136-265 (283)
366 1z57_A Dual specificity protei 99.1 1.2E-10 4.1E-15 124.5 7.4 40 694-736 146-204 (339)
367 4eut_A Serine/threonine-protei 99.1 4.8E-11 1.6E-15 130.7 4.1 112 694-807 140-307 (396)
368 2vgo_A Serine/threonine-protei 99.1 6.5E-11 2.2E-15 123.3 4.8 102 694-802 142-262 (284)
369 1fvr_A Tyrosine-protein kinase 99.1 2.8E-11 9.6E-16 128.9 1.9 113 694-807 170-298 (327)
370 2eu9_A Dual specificity protei 99.1 1.3E-10 4.5E-15 125.1 7.1 40 694-736 151-209 (355)
371 3nyv_A Calmodulin-domain prote 99.1 5.3E-11 1.8E-15 134.1 4.2 107 694-802 154-281 (484)
372 3lij_A Calcium/calmodulin depe 99.1 1E-10 3.5E-15 132.0 6.4 107 694-802 164-291 (494)
373 1phk_A Phosphorylase kinase; g 99.0 7.5E-11 2.5E-15 123.7 4.8 107 694-802 152-283 (298)
374 3mwu_A Calmodulin-domain prote 99.0 1.3E-10 4.4E-15 131.0 7.0 108 694-803 149-277 (486)
375 1t4h_A Serine/threonine-protei 99.0 1.9E-10 6.5E-15 120.1 7.8 107 694-802 159-282 (290)
376 2y4i_B KSR2, HKSR2, kinase sup 99.0 7.6E-11 2.6E-15 125.0 4.8 113 694-809 158-302 (319)
377 2i6l_A Mitogen-activated prote 99.0 1.1E-10 3.7E-15 123.8 5.8 43 694-736 148-194 (320)
378 1j1b_A Glycogen synthase kinas 99.0 1.1E-10 3.8E-15 128.7 6.1 42 694-736 184-226 (420)
379 2acx_A G protein-coupled recep 99.0 3.7E-11 1.3E-15 136.0 2.0 107 694-802 314-444 (576)
380 1wak_A Serine/threonine-protei 99.0 1.3E-10 4.5E-15 127.3 6.4 30 773-802 362-391 (397)
381 3rgf_A Cyclin-dependent kinase 99.0 7E-11 2.4E-15 129.9 4.1 43 694-736 156-205 (405)
382 3coi_A Mitogen-activated prote 99.0 1.7E-10 5.8E-15 124.3 6.7 40 694-736 154-193 (353)
383 3q60_A ROP5B; pseudokinase, tr 99.0 9.6E-11 3.3E-15 127.1 4.8 103 694-802 222-352 (371)
384 2rio_A Serine/threonine-protei 99.0 1.3E-10 4.6E-15 128.7 5.8 109 694-802 143-295 (434)
385 3q5i_A Protein kinase; CDPK, m 99.0 2.5E-10 8.7E-15 129.1 8.1 107 694-802 174-301 (504)
386 3gni_B Strad alpha; kinase fol 99.0 2.5E-10 8.7E-15 124.7 7.8 43 694-736 156-205 (389)
387 2dyl_A Dual specificity mitoge 99.0 2.1E-10 7E-15 121.6 6.8 108 694-802 153-283 (318)
388 2qr7_A Ribosomal protein S6 ki 99.0 1.4E-10 4.9E-15 124.0 5.3 108 694-802 144-277 (342)
389 2pml_X PFPK7, Ser/Thr protein 99.0 1.2E-10 4.2E-15 125.0 4.8 107 694-802 180-322 (348)
390 2ycf_A Serine/threonine-protei 99.0 1.3E-10 4.6E-15 123.3 5.0 107 694-802 142-274 (322)
391 4e7w_A Glycogen synthase kinas 99.0 2.3E-10 7.8E-15 125.1 6.5 42 694-736 169-211 (394)
392 3eb0_A Putative uncharacterize 99.0 2.7E-10 9.2E-15 124.2 6.1 42 694-736 169-211 (383)
393 1q8y_A SR protein kinase; tran 99.0 3.5E-10 1.2E-14 122.7 6.5 40 694-736 160-205 (373)
394 2wei_A Calmodulin-domain prote 98.9 3.6E-10 1.2E-14 117.8 4.9 107 694-802 149-276 (287)
395 3fhr_A MAP kinase-activated pr 98.9 4.1E-10 1.4E-14 120.2 5.2 106 694-802 156-287 (336)
396 4h09_A Hypothetical leucine ri 98.9 1.5E-07 5.1E-12 102.2 24.7 107 337-446 236-342 (379)
397 2pzi_A Probable serine/threoni 98.9 1.6E-09 5.6E-14 127.1 8.4 106 694-806 210-325 (681)
398 4h09_A Hypothetical leucine ri 98.9 1.9E-07 6.4E-12 101.3 22.9 164 268-437 193-356 (379)
399 3qa8_A MGC80376 protein; kinas 98.8 1.5E-09 5E-14 124.3 4.8 42 694-736 149-193 (676)
400 2ra8_A Uncharacterized protein 98.8 2.3E-09 7.7E-14 114.6 5.1 90 436-540 251-341 (362)
401 2ra8_A Uncharacterized protein 98.7 2.8E-09 9.6E-14 113.9 3.4 139 311-452 166-322 (362)
402 3rw6_A Nuclear RNA export fact 98.6 2.8E-10 9.7E-15 115.2 -10.1 105 121-227 137-257 (267)
403 2vuw_A Serine/threonine-protei 98.5 7.1E-08 2.4E-12 102.8 7.2 38 694-736 190-247 (336)
404 4azs_A Methyltransferase WBDD; 98.5 2.1E-08 7.2E-13 114.3 0.1 43 694-736 367-409 (569)
405 3m2w_A MAP kinase-activated pr 98.4 1E-07 3.5E-12 99.7 4.0 27 776-802 230-256 (299)
406 1io0_A Tropomodulin; LRR prote 98.3 4.4E-08 1.5E-12 94.3 -1.8 87 147-233 63-163 (185)
407 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.2E-12 89.5 2.6 43 500-542 116-164 (185)
408 3uqc_A Probable conserved tran 98.2 4.3E-07 1.5E-11 94.2 4.2 31 777-808 234-264 (286)
409 3rw6_A Nuclear RNA export fact 98.1 1.7E-06 5.7E-11 87.5 3.7 106 97-204 137-258 (267)
410 3e4g_A ATP synthase subunit S, 97.8 4E-06 1.4E-10 78.5 1.5 83 125-207 61-149 (176)
411 3e4g_A ATP synthase subunit S, 97.8 7.6E-06 2.6E-10 76.6 2.5 84 365-448 61-150 (176)
412 3en9_A Glycoprotease, O-sialog 97.7 4.4E-06 1.5E-10 94.6 -0.0 41 694-736 459-506 (540)
413 1zar_A RIO2 kinase; serine kin 97.2 0.00015 5.1E-09 74.6 3.9 22 694-716 221-242 (282)
414 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00013 4.5E-09 69.5 0.0 85 122-206 38-135 (197)
415 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00025 8.4E-09 67.6 1.0 17 433-449 153-169 (197)
416 1zth_A RIO1 serine protein kin 96.1 0.0033 1.1E-07 63.5 4.2 21 694-716 199-219 (258)
417 3rfe_A Platelet glycoprotein I 95.7 0.017 6E-07 51.1 6.6 34 151-184 33-66 (130)
418 3rfe_A Platelet glycoprotein I 95.4 0.029 1E-06 49.6 6.9 33 199-231 33-65 (130)
419 2ks1_B Epidermal growth factor 92.9 0.17 5.9E-06 34.4 4.7 7 604-610 32-38 (44)
420 2l2t_A Receptor tyrosine-prote 91.3 0.25 8.6E-06 33.5 4.0 7 586-592 12-18 (44)
421 4gyi_A RIO2 kinase; protein ki 87.5 0.2 6.8E-06 53.1 2.0 20 658-677 109-128 (397)
422 1iij_A ERBB-2 receptor protein 47.3 7.2 0.00024 24.9 1.2 7 586-592 10-16 (35)
423 2l8s_A Integrin alpha-1; trans 31.1 41 0.0014 23.8 3.0 16 585-600 11-26 (54)
424 2lz0_A Uncharacterized protein 26.9 1.6E+02 0.0054 23.8 6.6 15 143-157 14-28 (100)
425 2knc_A Integrin alpha-IIB; tra 26.4 85 0.0029 22.3 4.0 16 585-600 14-29 (54)
426 2lz0_A Uncharacterized protein 24.3 94 0.0032 25.2 4.7 39 118-157 13-51 (100)
427 1nd4_A Aminoglycoside 3'-phosp 20.4 27 0.00092 33.9 0.7 22 694-715 193-214 (264)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-68 Score=634.68 Aligned_cols=536 Identities=32% Similarity=0.474 Sum_probs=376.2
Q ss_pred CCCCHHHHHHHHcCCCC-----CCCCCCCCCCCCCCCccceeeCCCCCEEEEEec--CCccc---cC-------------
Q 003465 34 IVPIRLEREALLNTGWW-----NNSREKASNHSDHCKWAGIVCNLNGSIIRISLS--GVNGI---RG------------- 90 (818)
Q Consensus 34 ~~~~~~~~~~ll~~~~~-----~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~--~~~g~---~~------------- 90 (818)
..+.+.||+||+++|.. .+++|. .++|||+|.||+|+ +|+|+.+++. ++.|. +.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~--~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWS--SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCC--TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCC--CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 34567899999987543 467896 47899999999999 7999999994 34443 10
Q ss_pred -------CCCCCCcCCCCCCcEEEcCCCCCcccCCc--cccCCCcCceecccCcccccCCCCCC-CCCCCCcEEECcCCC
Q 003465 91 -------KLDQFNFSCFPNLESFRIWYSNISGNIPS--EIGALSKLQILDLSHNNLTGTIPSKL-GNLNNLVELYLSRSN 160 (818)
Q Consensus 91 -------~l~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~ 160 (818)
.++. .|..+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.
T Consensus 84 ~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 0112 388899999999999999988888 88899999999999888877666544 445555555555544
Q ss_pred CCCCCccc-------------------------cCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCc
Q 003465 161 LNGPIPST-------------------------LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPL 215 (818)
Q Consensus 161 l~~~~p~~-------------------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 215 (818)
+++..|.. +..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 43322211 12334444444444444443333 44444444444444444433333
Q ss_pred cccCCCCCCE----------------------EEccCCcCCCCCCCCCCCC-CcceEEEccCCCCCCCCCccccCCCCCc
Q 003465 216 DFGNLRHLKE----------------------VDLSGNKLNGPIASTIGDL-TNLNSLDLSSKQLSGPLPQEIGYLENLV 272 (818)
Q Consensus 216 ~l~~l~~L~~----------------------L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 272 (818)
.+.++++|++ |++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 3333333333 3333333333344444333 5555555555555555555554444444
Q ss_pred EEEccccccCCcCCcc-cCCCC---------------------------------------------------CCCEEEc
Q 003465 273 YLSLNVNNLTGPIPST-LGRLT---------------------------------------------------SLSDLDL 300 (818)
Q Consensus 273 ~L~L~~n~l~~~~~~~-l~~l~---------------------------------------------------~L~~L~L 300 (818)
+|++++|.+++.+|.. +..++ +|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 4444444444333322 33333 3444444
Q ss_pred cCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCC
Q 003465 301 SHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP 380 (818)
Q Consensus 301 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (818)
++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 44444445555666667777777777777777777777777777777777777777777778888888888888888888
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcC
Q 003465 381 IPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQ 460 (818)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 460 (818)
+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+.++++|+.|++++|+++|.+|..++..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 88888888888888888888888888888888888888888888888888888888999999999999988888776542
Q ss_pred cccc----------------------------------------------------------------ccccccEEECCC
Q 003465 461 KHSI----------------------------------------------------------------RDRLLTYVNHQF 476 (818)
Q Consensus 461 ~~~~----------------------------------------------------------------~~~~L~~l~ls~ 476 (818)
.... ....++.||+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 1100 013578999999
Q ss_pred CcCcccCCcccccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCC
Q 003465 477 NRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 477 n~l~g~~p~~~~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 546 (818)
|+++|.+|..++.+.. ++|.||+.++++++|+.||||+|+++|.+|..++.+++|++||+|+|+++|.||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999987765 789999999999999999999999999999999999999999999999999999
Q ss_pred c-ccccCCCCCcccCcCCCC-CCCCCCCCCCCC
Q 003465 547 E-FINRIMPADLVPMINFSI-SPTPSPASPQQE 577 (818)
Q Consensus 547 ~-~~~~~~~~~~~~~n~~~~-~~~~~~~~~~~~ 577 (818)
+ +++.+++..+|.||+++| .|.+ +|...
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~---~C~~~ 751 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP---RCDPS 751 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC---CCCSC
T ss_pred CchhhccCCHHHhcCCchhcCCCCc---CCCCC
Confidence 9 889999999999999999 5543 67643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-54 Score=513.74 Aligned_cols=458 Identities=34% Similarity=0.476 Sum_probs=340.9
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCC--CCCCCCCCcEEECcCCCCCCCCcccc-CCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPS--KLGNLNNLVELYLSRSNLNGPIPSTL-GHLT 173 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~ 173 (818)
+.++++|+.++++.+.+. .+|..|+++++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .+++
T Consensus 73 l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred HhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 778899999999988775 3678899999999999999999998888 89999999999999999998888766 8899
Q ss_pred CCCEEEccCCCCCCCCccC-------------------------CCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEc
Q 003465 174 RLSILDLSSNSLVGPIPFT-------------------------LGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDL 228 (818)
Q Consensus 174 ~L~~L~L~~n~l~~~~~~~-------------------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 228 (818)
+|++|+|++|.+++..|.. +..+++|++|++++|.+++.+|. ++++++|++|++
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 230 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence 9999999999887654432 25678889999999999987777 999999999999
Q ss_pred cCCcCCCCCCCCCCCCCcceEEEccCCCCCC----------------------CCCccccCC-CCCcEEEccccccCCcC
Q 003465 229 SGNKLNGPIASTIGDLTNLNSLDLSSKQLSG----------------------PLPQEIGYL-ENLVYLSLNVNNLTGPI 285 (818)
Q Consensus 229 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----------------------~~~~~l~~l-~~L~~L~L~~n~l~~~~ 285 (818)
++|.+++..+..+..+++|++|++++|.+++ .+|..+... ++|++|++++|.+++.+
T Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 9999998777777777777777777766553 455666554 99999999999999999
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchh-hcCCCCCCeeeccCCcCCCCcC------------------------------
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPT-LSHLTRLTTLKLFSNQINGSIP------------------------------ 334 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~------------------------------ 334 (818)
|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+.+|
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999999988666654 6666666666666665543333
Q ss_pred ---------------------ccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCE
Q 003465 335 ---------------------LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKF 393 (818)
Q Consensus 335 ---------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 393 (818)
..+..+++|+.|++++|++.+..|..++.+++|+.|++++|.+++.+|..+..+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 33344445555555555555555555555555666666666665556666666666666
Q ss_pred EEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEE
Q 003465 394 LNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVN 473 (818)
Q Consensus 394 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ 473 (818)
|++++|++++.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+. .|+.|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------~L~~L~ 544 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR------SLIWLD 544 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT------TCCEEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC------CCCEEE
Confidence 66666666666666666666677777777776666666666677777777777777766666666655 788899
Q ss_pred CCCCcCcccCCcccccc---------------------------------------------------------------
Q 003465 474 HQFNRLSGQIPMTIGGL--------------------------------------------------------------- 490 (818)
Q Consensus 474 ls~n~l~g~~p~~~~~~--------------------------------------------------------------- 490 (818)
+++|.++|.+|..+..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 99998888888654321
Q ss_pred -----------------cCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--cccc
Q 003465 491 -----------------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINR 551 (818)
Q Consensus 491 -----------------~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~ 551 (818)
..++|.||..++++++|+.|||++|+++|.+|..++++++|++||||+|+++|.||+ ....
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 014567777777777777777777777777777777777777777777777777776 3333
Q ss_pred CCCCCcccCcC
Q 003465 552 IMPADLVPMIN 562 (818)
Q Consensus 552 ~~~~~~~~~n~ 562 (818)
.+....+++|.
T Consensus 705 ~L~~L~ls~N~ 715 (768)
T 3rgz_A 705 MLTEIDLSNNN 715 (768)
T ss_dssp CCSEEECCSSE
T ss_pred CCCEEECcCCc
Confidence 44444455553
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-53 Score=493.42 Aligned_cols=472 Identities=21% Similarity=0.292 Sum_probs=351.6
Q ss_pred HHHHHHHHcC-------CCCCC-------CCCCCCCCCCCCCc---cceeeCCCCCEEEEEe--cCCccccCCCCCCCcC
Q 003465 38 RLEREALLNT-------GWWNN-------SREKASNHSDHCKW---AGIVCNLNGSIIRISL--SGVNGIRGKLDQFNFS 98 (818)
Q Consensus 38 ~~~~~~ll~~-------~~~~~-------~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l--~~~~g~~~~l~~~~l~ 98 (818)
..|+.||... .|... .+|. .+.|||.| .||+|+..|+|++|++ .++.|.+ ++. +.
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l---p~~-l~ 102 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN--FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV---PDA-IG 102 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC--CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE---CGG-GG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC--CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC---ChH-Hh
Confidence 4688899863 23322 2686 46899999 9999988899999999 4566766 654 99
Q ss_pred CCCCCcEEEcCCCCC------cc------cCCccccCCCcCceecccCcccccCCCCCCCCC------------------
Q 003465 99 CFPNLESFRIWYSNI------SG------NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNL------------------ 148 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------------------ 148 (818)
+|++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+..+
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999976 22 334333 45666 7777777776666555421
Q ss_pred -CCCcEEECc--CCCCCCCCccccCCCCCCCEEEccCCCCCCC-----------------CccCCC--CCCCCcEEEccc
Q 003465 149 -NNLVELYLS--RSNLNGPIPSTLGHLTRLSILDLSSNSLVGP-----------------IPFTLG--HLTQLTTLKLFS 206 (818)
Q Consensus 149 -~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~ 206 (818)
..++.+.+. +|++++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 112222222 466766 777788888888888888888764 777777 888888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCc-CCC-CCCCCCCCC------CcceEEEccCCCCCCCCCc--cccCCCCCcEEEc
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNK-LNG-PIASTIGDL------TNLNSLDLSSKQLSGPLPQ--EIGYLENLVYLSL 276 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L 276 (818)
|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 88888888888888888888888887 776 667666655 78888888888888 6777 7888888888888
Q ss_pred cccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC-CCeeeccCCcCCCCcCccccCCC--CCCEEEcCCCcc
Q 003465 277 NVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR-LTTLKLFSNQINGSIPLGIGNLE--NLERVDMSSNKL 353 (818)
Q Consensus 277 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l 353 (818)
++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 8888887777 7777888888888888887 66777888888 888888888887 6777666544 788888888888
Q ss_pred cccCCcCcC-------CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC-C-------CCCCEE
Q 003465 354 EGPIPLTIG-------DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN-C-------FSLQSL 418 (818)
Q Consensus 354 ~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l-------~~L~~L 418 (818)
.+..|..+. .+++|+.|++++|.++...+..+..+++|++|+|++|+++ .+|..+.. . ++|+.|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 887777777 7778888888888888544445666888888888888888 45543322 2 278888
Q ss_pred ecccCcCcccCCcccc--CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCccc
Q 003465 419 ILSNNSLTGRIPSEIR--NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGS 496 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ 496 (818)
++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+. .|+.|++++|+.. ....+.+.
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~------~L~~L~Ls~N~~l--------s~N~l~~~ 557 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS------TLKGFGIRNQRDA--------QGNRTLRE 557 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS------SCCEEECCSCBCT--------TCCBCCCC
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC------CCCEEECCCCccc--------ccCccccc
Confidence 88888888 6777776 88888888888888887 677777666 7888888554311 01123344
Q ss_pred CChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcc
Q 003465 497 VPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 497 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 543 (818)
+|..++++++|+.|+|++|++ +.+|..+. ++|+.||+++|++..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 555888899999999999999 78888766 799999999998763
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-50 Score=469.63 Aligned_cols=466 Identities=21% Similarity=0.194 Sum_probs=357.6
Q ss_pred CEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEE
Q 003465 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155 (818)
Q Consensus 76 ~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 155 (818)
.++.|++.+- .+..+++.+|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 34 ~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 5677777321 12223455588999999999999999888888999999999999999999888888899999999999
Q ss_pred CcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCC--EEEccCCcC
Q 003465 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK--EVDLSGNKL 233 (818)
Q Consensus 156 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l 233 (818)
+++|.+++..|..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999876677889999999999999998875444555589999999999999888788888899998 889999988
Q ss_pred CCCCCCCCCCC---------------------------------------------------CcceEEEccCCCCCCCCC
Q 003465 234 NGPIASTIGDL---------------------------------------------------TNLNSLDLSSKQLSGPLP 262 (818)
Q Consensus 234 ~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~~~ 262 (818)
.+..+..+... .+|+.|++++|.+++..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 87666554321 156677777777776666
Q ss_pred ccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcc-ccCCC
Q 003465 263 QEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG-IGNLE 341 (818)
Q Consensus 263 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 341 (818)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 66777777777777777777 56666777777777777777777666667777777777777777776555543 67777
Q ss_pred CCCEEEcCCCcccccC--CcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCcc-ccCCCCCCEE
Q 003465 342 NLERVDMSSNKLEGPI--PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSE-LMNCFSLQSL 418 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 418 (818)
+|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 7777777777776554 566777777777777777777776777777777777777777777655443 6677777777
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccC---ChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT---PPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG 495 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g 495 (818)
++++|.+.+..|..+..+++|++|++++|++++.. +..+..+. .|+.|++++|.+++..|.
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~---------- 494 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG------RLEILVLSFCDLSSIDQH---------- 494 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT------TCCEEECTTSCCCEECTT----------
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC------CccEEECCCCccCccChh----------
Confidence 77777777767777777777777777777776531 12333344 677777777777765554
Q ss_pred cCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 496 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
.++.+++|+.|||++|++++.+|..+..++.| +|++++|++++.+|. .....+....+.+|+..|
T Consensus 495 ----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 495 ----AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ----TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ----hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 78889999999999999999999999999999 999999999987776 345566777788888777
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6e-50 Score=475.07 Aligned_cols=465 Identities=20% Similarity=0.243 Sum_probs=260.8
Q ss_pred CCHHHHHHHHcCCCC-CCCCCCCCC---CCCC--CCc------------cceeeCCCCCEEEEEe--cCCccccCCCCCC
Q 003465 36 PIRLEREALLNTGWW-NNSREKASN---HSDH--CKW------------AGIVCNLNGSIIRISL--SGVNGIRGKLDQF 95 (818)
Q Consensus 36 ~~~~~~~~ll~~~~~-~~~~~~~~~---~~~~--c~w------------~gv~c~~~~~v~~l~l--~~~~g~~~~l~~~ 95 (818)
+...|++||+.++.. ...+|.... ..+| |.| .||.|+..|+|+.|++ .++.|.+ ++.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i---p~~ 342 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV---PDA 342 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE---CGG
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC---chH
Confidence 345799999985421 122564322 2355 999 9999998899999999 4566666 655
Q ss_pred CcCCCCCCcEEEc-CCCCCcccCCcccc---------------------------------------------------C
Q 003465 96 NFSCFPNLESFRI-WYSNISGNIPSEIG---------------------------------------------------A 123 (818)
Q Consensus 96 ~l~~l~~L~~L~L-~~n~~~~~~~~~~~---------------------------------------------------~ 123 (818)
|.+|++|++|+| ++|.+.|..|.... .
T Consensus 343 -l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 343 -IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp -GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred -HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 899999999999 78877766332211 1
Q ss_pred CCcCceecccC--cccccCCCCCCCCCCCCcEEECcCCCCCC-----------------CCccccC--CCCCCCEEEccC
Q 003465 124 LSKLQILDLSH--NNLTGTIPSKLGNLNNLVELYLSRSNLNG-----------------PIPSTLG--HLTRLSILDLSS 182 (818)
Q Consensus 124 l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~L~~ 182 (818)
...++.+.+.. |++++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++
T Consensus 422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 11222222222 44444 44455555555555555555554 1444443 444444444444
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCc-CCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQ-ING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ ..+..+++|+.|++++|.++ .
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------DDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------HCTTTTTTCCEEECCSSCCC-B
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------hcccccCCccEEEeeCCcCC-c
Confidence 44444444444444444444444444 443 3343333222 01122235555555555555 4
Q ss_pred CCc--cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC-CCeeeccCCcCCCCcCccc
Q 003465 261 LPQ--EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR-LTTLKLFSNQINGSIPLGI 337 (818)
Q Consensus 261 ~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l 337 (818)
+|. .+..+++|++|+|++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|+|++|++. .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 444 4555555555555555555 444 4555555555555555555 45555555555 555555555555 445444
Q ss_pred cCCCC--CCEEEcCCCcccccCCcC---cC--CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCcccc
Q 003465 338 GNLEN--LERVDMSSNKLEGPIPLT---IG--DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELM 410 (818)
Q Consensus 338 ~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 410 (818)
..++. |+.|++++|++.+.+|.. +. .+++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+.
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHh
Confidence 44332 555556555555443321 11 2235666666666665322222345566666666666665 3443332
Q ss_pred CC--------CCCCEEecccCcCcccCCcccc--CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCc
Q 003465 411 NC--------FSLQSLILSNNSLTGRIPSEIR--NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLS 480 (818)
Q Consensus 411 ~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~ 480 (818)
.. ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+. .|+.|++++|+.
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~------~L~~L~Ls~N~~- 788 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS------QLKAFGIRHQRD- 788 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT------TCCEEECCCCBC-
T ss_pred ccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC------CCCEEECCCCCC-
Confidence 21 25666666666666 5555554 66666666666666665 355555444 566666655330
Q ss_pred ccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 481 GQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 481 g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.....+.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.||||+|++...-+.
T Consensus 789 -------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 789 -------AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 001123344555888999999999999999 88898866 6999999999998654443
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-48 Score=461.09 Aligned_cols=482 Identities=24% Similarity=0.246 Sum_probs=332.9
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.|++.+- .+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|
T Consensus 25 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 46778887431 1223355558999999999999999998889999999999999999999996555679999999999
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCcccc--CCCCCCEEEccCCc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFG--NLRHLKEVDLSGNK 232 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 232 (818)
++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888889999999999999998876665543 45778888888777
Q ss_pred CCCCCCCCCCCC---------------------------Cc--------------------------ceEEEccCCCCCC
Q 003465 233 LNGPIASTIGDL---------------------------TN--------------------------LNSLDLSSKQLSG 259 (818)
Q Consensus 233 l~~~~~~~l~~l---------------------------~~--------------------------L~~L~L~~n~l~~ 259 (818)
+++..+..+..+ ++ |+.|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 766555443322 22 5555555555554
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC-----CCch----hhcCCCCCCeeeccCCcCC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG-----PIPP----TLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~l~ 330 (818)
..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|...+ .+|. .+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 444455555555555555555554444444444444444444332221 1111 3444555566666666665
Q ss_pred CCcCccccCCCCCCEEEcCC----------------------------CcccccCCcCcCCCCCCCEEeccCCcCCCCCC
Q 003465 331 GSIPLGIGNLENLERVDMSS----------------------------NKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIP 382 (818)
Q Consensus 331 ~~~~~~l~~l~~L~~L~Ls~----------------------------n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 382 (818)
+..+..+..+++|+.|++++ |++.+..+..+..+++|+.|++++|.+++.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 55554555555555544444 33444444555566666666666666654433
Q ss_pred -cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCc--ccCCccccCCCCCCEEECcCCcCCccCChhhhc
Q 003465 383 -STFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLT--GRIPSEIRNLSYLHELDLSLNFISGMTPPQHFK 459 (818)
Q Consensus 383 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 459 (818)
..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+.++++|+.|++++|.+++..+..+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45566666666666666666555556666666666666666664 456777888888888888888888776665655
Q ss_pred CccccccccccEEECCCCcCcccCCc--------ccccccC----------CcccCCh-hhcCCcCCCEEECCCCcCccC
Q 003465 460 QKHSIRDRLLTYVNHQFNRLSGQIPM--------TIGGLSK----------LSGSVPS-EIGNCSGLLNVTLSNNSLDGT 520 (818)
Q Consensus 460 ~~~~~~~~~L~~l~ls~n~l~g~~p~--------~~~~~~~----------l~g~ip~-~~~~l~~L~~L~Ls~N~l~~~ 520 (818)
+. .|+.|++++|++++..+. .+.++.. ++ .+|. .|+++++|+.|||++|++++.
T Consensus 503 l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 503 LE------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp CT------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cc------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcC
Confidence 55 788888888888764221 1333332 33 4554 589999999999999999987
Q ss_pred CcccccCCCCCCeeeCcCCCCcccCCc--c-cccCCCCCcccCcCCCC
Q 003465 521 IPLEMGKIIFLEYLDLSYNNIPGTVPE--F-INRIMPADLVPMINFSI 565 (818)
Q Consensus 521 ~p~~l~~l~~L~~L~ls~N~l~g~ip~--~-~~~~~~~~~~~~n~~~~ 565 (818)
.+..+..+++|+.|++++|++++..|. . .+..+....+.+|+..|
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 777889999999999999999987665 2 45677778889999988
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-48 Score=456.65 Aligned_cols=428 Identities=20% Similarity=0.185 Sum_probs=360.6
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 68999999999999989999999999999999999998889999999999999999999998889999999999999999
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce--EEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN--SLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~ 259 (818)
+|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9999987788899999999999999999975545566699999999999999987788889999999 89999999987
Q ss_pred CCCccccCC---------------------------------------------------CCCcEEEccccccCCcCCcc
Q 003465 260 PLPQEIGYL---------------------------------------------------ENLVYLSLNVNNLTGPIPST 288 (818)
Q Consensus 260 ~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~~~~~ 288 (818)
..|..+... .+|++|++++|.+++..+..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 666554321 15677777888887776777
Q ss_pred cCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCc-CcCCCCCC
Q 003465 289 LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPL-TIGDLTNL 367 (818)
Q Consensus 289 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L 367 (818)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 888888888888888887 5677778888888888888888877777788888888888888887765544 47788888
Q ss_pred CEEeccCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCcc-ccCCCCCCEEEC
Q 003465 368 IYLDLSLNQLSGPI--PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSE-IRNLSYLHELDL 444 (818)
Q Consensus 368 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 444 (818)
++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +.++++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 88888888887654 667788888888888888888777778888888888888888887665543 778888888888
Q ss_pred cCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc
Q 003465 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE 524 (818)
Q Consensus 445 s~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 524 (818)
++|.+++..|..+..+. .|+.|++++|.+++.... .+..++.+++|+.|++++|++++.+|..
T Consensus 433 ~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLP------ALQHLNLQGNHFPKGNIQ-----------KTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCCBTTCTTTTTTCT------TCCEEECTTCBCGGGEEC-----------SSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred CCCccCCcCHHHHhCCC------CCCEEECCCCCCCccccc-----------cchhhccCCCccEEECCCCccCccChhh
Confidence 88888877776666555 788888888888763211 1236889999999999999999999999
Q ss_pred ccCCCCCCeeeCcCCCCcccCCc
Q 003465 525 MGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 525 l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
++.+++|++|++++|++++.+|+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGG
T ss_pred hccccCCCEEECCCCccCcCChh
Confidence 99999999999999999998887
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-48 Score=470.19 Aligned_cols=482 Identities=21% Similarity=0.194 Sum_probs=377.8
Q ss_pred CCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccC-CccccCCCcCceecccCcccccCCC
Q 003465 64 CKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNI-PSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 64 c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
|.|..|.+ ....++.|++..- .+..+.+.+|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+++..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC-CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 56777877 5677888888421 122234455999999999999999776666 7789999999999999999998889
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccc--cCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccCcCCccCCccccC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPST--LGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCIPLDFGN 219 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 219 (818)
..|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..++++++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766665 8999999999999999987654 57899999999999999999888888887
Q ss_pred C--CCCCEEEccCCcCCCCCCCCCCCCCc------ceEEEccCCCCCCCCCccccC------------------------
Q 003465 220 L--RHLKEVDLSGNKLNGPIASTIGDLTN------LNSLDLSSKQLSGPLPQEIGY------------------------ 267 (818)
Q Consensus 220 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~------------------------ 267 (818)
+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+++..+..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 7 89999999999998877777666655 999999999877665544321
Q ss_pred --------------CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCc
Q 003465 268 --------------LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSI 333 (818)
Q Consensus 268 --------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 333 (818)
.++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 257888888888888777778888888888888888888777778888888888888888888777
Q ss_pred CccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCC
Q 003465 334 PLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF 413 (818)
Q Consensus 334 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 413 (818)
|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---cc
Confidence 77888888888888888888777777788888888888888887742 23677888888888877 44432 45
Q ss_pred CCCEEecccCcCcccC-CccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcc-----cCCccc
Q 003465 414 SLQSLILSNNSLTGRI-PSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG-----QIPMTI 487 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g-----~~p~~~ 487 (818)
+++.|++++|.+++.. +..+.++++|+.|++++|++++..+...... ...|+.|++++|.+++ ..|..+
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-----NPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-----CTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc-----CCccccccCCCCccccccccccchhhh
Confidence 6778888888877532 2234578888888888888887644322111 1268888888888863 333334
Q ss_pred ccccC----------CcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCc
Q 003465 488 GGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADL 557 (818)
Q Consensus 488 ~~~~~----------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 557 (818)
..+.. +++..|..++.+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|+. +..+....
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-~~~L~~l~ 553 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-FVSLSVLD 553 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-CSSCCEEE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-hCCcCEEE
Confidence 44433 4566777889999999999999999988877766 89999999999999988863 34566667
Q ss_pred ccCcCCCC
Q 003465 558 VPMINFSI 565 (818)
Q Consensus 558 ~~~n~~~~ 565 (818)
+.+|+..|
T Consensus 554 l~~Np~~C 561 (844)
T 3j0a_A 554 ITHNKFIC 561 (844)
T ss_dssp EEEECCCC
T ss_pred ecCCCccc
Confidence 78888877
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-48 Score=454.01 Aligned_cols=459 Identities=21% Similarity=0.171 Sum_probs=305.2
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.+++.+- .+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 35677777321 1222244447888888888888888887778788888888888888888887778888888888888
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCC----EEEcc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK----EVDLS 229 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~ 229 (818)
++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 888888886666778888888888888888875 4677888888888888888888877777776666554 78888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCCC-CCCcc--------------------------------------------
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLSG-PLPQE-------------------------------------------- 264 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------------------- 264 (818)
+|.+++..+..+... +|+.|++++|.+++ ..|..
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 888876555555444 78888888876541 11111
Q ss_pred ------------ccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 265 ------------IGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 265 ------------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 333455555555555554 233 455555666666666655 3444 23 555666666665543332
Q ss_pred cCccccCCCCCCEEEcCCCccccc--CCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-ccc
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGP--IPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SEL 409 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 409 (818)
+ .+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 2 344556666666666655543 24455556666666666666553 33555556666666666666655544 455
Q ss_pred cCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCcc-CChhhhcCccccccccccEEECCCCcCcccCCcccc
Q 003465 410 MNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM-TPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIG 488 (818)
Q Consensus 410 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~ 488 (818)
..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++. .|..+..+. .|+.|++++|++++..
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~----- 489 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT------NLTFLDLSKCQLEQIS----- 489 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEEC-----
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC------CCCEEECCCCcCCccC-----
Confidence 5566666666666666655555566666666666666666552 344444333 5666666666655444
Q ss_pred cccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcc--cc-cCCCCCcccCcCCCC
Q 003465 489 GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF--IN-RIMPADLVPMINFSI 565 (818)
Q Consensus 489 ~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~-~~~~~~~~~~n~~~~ 565 (818)
|..++.+++|+.|++++|++++.+|..++.+++|++||+++|+++ .+|.. .. ..+....+.+|+..|
T Consensus 490 ---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 490 ---------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ---------hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 447888999999999999999999999999999999999999998 67763 22 235566778888877
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-46 Score=440.76 Aligned_cols=440 Identities=22% Similarity=0.204 Sum_probs=315.2
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999999888888999999999999999999988999999999999999999999665567999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCC--CCCcceEEEccCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG--DLTNLNSLDLSSKQLS 258 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~ 258 (818)
++|.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999988778899999999999999999998899999999999999999999877666543 5689999999999998
Q ss_pred CCCCccccCC---------------------------CCCcEEEccccccCCcCCcccCCCCC--CCEEEccCCcCCCCC
Q 003465 259 GPLPQEIGYL---------------------------ENLVYLSLNVNNLTGPIPSTLGRLTS--LSDLDLSHNSLFGPI 309 (818)
Q Consensus 259 ~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~ 309 (818)
+..|..+..+ ++|++|++++|.+++..|..+..++. |+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 8777655433 45566666666666666666665543 777777777776666
Q ss_pred chhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccc-----cCC----cCcCCCCCCCEEeccCCcCCCC
Q 003465 310 PPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEG-----PIP----LTIGDLTNLIYLDLSLNQLSGP 380 (818)
Q Consensus 310 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~----~~l~~l~~L~~L~Ls~n~l~~~ 380 (818)
+..+..+++|++|++++|++.+..|..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 6666777777777777777666555555555555555554433221 111 1334444444444444444444
Q ss_pred CCcccCCCC----------------------------CCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-c
Q 003465 381 IPSTFGHLT----------------------------LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-S 431 (818)
Q Consensus 381 ~~~~~~~l~----------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~ 431 (818)
.+..|..++ +|+.|++++|++++..|..+..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 333333333 45555555566666667777888888888888888876655 5
Q ss_pred cccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCc--ccCCcccccccC----------CcccCCh
Q 003465 432 EIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLS--GQIPMTIGGLSK----------LSGSVPS 499 (818)
Q Consensus 432 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~--g~~p~~~~~~~~----------l~g~ip~ 499 (818)
.+.++++|++|++++|++++..+..+..+. .|+.|++++|.+. +.+|..+..+.. +++..|.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVP------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCT------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCc------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 677888888888888888776665555444 5666666666655 344544444332 3334444
Q ss_pred hhcCCcCCCEEECCCCcCccCCc--------ccccCCCCCCeeeCcCCCCcccCCc
Q 003465 500 EIGNCSGLLNVTLSNNSLDGTIP--------LEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 500 ~~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.++.+++|+.|++++|++++..+ ..++.+++|++|++++|+++ .+|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 56666667777777776665311 22566666666777666666 4554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-46 Score=438.71 Aligned_cols=436 Identities=21% Similarity=0.179 Sum_probs=327.5
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 68999999999999988889999999999999999999888899999999999999999999888999999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce----EEEccCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN----SLDLSSK 255 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n 255 (818)
++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998877889999999999999999986 5699999999999999999999988888887776655 8999999
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCC-cCCcc----------------------------------------------
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTG-PIPST---------------------------------------------- 288 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~---------------------------------------------- 288 (818)
.+++..+..+.. .+|++|++++|.+++ ..|..
T Consensus 192 ~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 999665555544 489999999987652 12222
Q ss_pred ----------cCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCC
Q 003465 289 ----------LGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIP 358 (818)
Q Consensus 289 ----------l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 358 (818)
+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|...+..
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 3344556666666666542 33 455566666666666666 3555 23 5666666666666443322
Q ss_pred cCcCCCCCCCEEeccCCcCCCC--CCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-ccccC
Q 003465 359 LTIGDLTNLIYLDLSLNQLSGP--IPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-SEIRN 435 (818)
Q Consensus 359 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 435 (818)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.+
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 445566666666666666544 24555666666666666666553 44556666666666666666665554 45566
Q ss_pred CCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCC
Q 003465 436 LSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNN 515 (818)
Q Consensus 436 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N 515 (818)
+++|+.|++++|.+++..|..+..+. .|+.|++++|.+++. .+|..++.+++|+.|++++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~-------------~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLT------SLNTLKMAGNSFKDN-------------TLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGG-------------EECSCCTTCTTCCEEECTTS
T ss_pred cccCCEEECcCCCCCccchhhhcCCC------CCCEEECCCCcCCCc-------------chHHhhccCCCCCEEECCCC
Confidence 66666666666666665555554444 566666666666542 23457889999999999999
Q ss_pred cCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCC
Q 003465 516 SLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFS 564 (818)
Q Consensus 516 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~ 564 (818)
++++.+|..++.+++|++|++++|++++.+|. .....+....+.+|...
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999999999999999999999999998887 33455666666676543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=434.03 Aligned_cols=442 Identities=22% Similarity=0.227 Sum_probs=281.7
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.|++.+- .+..+++..|.++++|++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|.++++|++|
T Consensus 28 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCC--ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 35667777321 1222244458888888888888888887777788888888888888888887777788888888888
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC----CEEEcc
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL----KEVDLS 229 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~ 229 (818)
++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| ++|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888888886555568888888888888888876 467888888888888888888887777778777777 788888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCC----------------------------------------------------
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQL---------------------------------------------------- 257 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l---------------------------------------------------- 257 (818)
+|.+.+..+..+... +|+.|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 888887767666655 788888777622
Q ss_pred ------CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCC
Q 003465 258 ------SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 258 ------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 2223334444555555555555555 344445555 5555555555554 2332 345555555555555544
Q ss_pred CcCccccCCCCCCEEEcCCCcccccC--CcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-cc
Q 003465 332 SIPLGIGNLENLERVDMSSNKLEGPI--PLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SE 408 (818)
Q Consensus 332 ~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 408 (818)
..+. ..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 3333 44555555555555555332 34445555555555555555543332 5555555556665555554433 34
Q ss_pred ccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCC-ccCChhhhcCccccccccccEEECCCCcCcccCCccc
Q 003465 409 LMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS-GMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTI 487 (818)
Q Consensus 409 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~ 487 (818)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+. .|+.|++++|++++..|.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~------~L~~L~l~~n~l~~~~~~-- 488 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPT-- 488 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTT--
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc------CCCEEECCCCccccCChh--
Confidence 455555556666555555555555555555566666555554 33444443333 555555555555544333
Q ss_pred ccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 488 GGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 488 ~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
.++.+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.
T Consensus 489 ------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 489 ------------AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ------------hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 556666666666666666666666666666666666666666666664
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-46 Score=450.26 Aligned_cols=451 Identities=24% Similarity=0.222 Sum_probs=370.4
Q ss_pred CCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC-CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999999999999999999999999766555 7889999999999999999998889999999999999
Q ss_pred EccCCCCCCCCccC--CCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCcCCCCCCCCCCCC--CcceEEEcc
Q 003465 179 DLSSNSLVGPIPFT--LGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNKLNGPIASTIGDL--TNLNSLDLS 253 (818)
Q Consensus 179 ~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~ 253 (818)
+|++|.+++..|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999866665 8999999999999999987655 579999999999999999998888888877 899999999
Q ss_pred CCCCCCCCCccccCCCC------CcEEEccccccCCcCCcccCC------------------------------------
Q 003465 254 SKQLSGPLPQEIGYLEN------LVYLSLNVNNLTGPIPSTLGR------------------------------------ 291 (818)
Q Consensus 254 ~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~------------------------------------ 291 (818)
+|.+.+..|..+..+.+ |++|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99999988877776665 999999999887655543321
Q ss_pred --CCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCE
Q 003465 292 --LTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIY 369 (818)
Q Consensus 292 --l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 369 (818)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|++.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 257888888888888777778888888888888888888777777888888888888888888777888888888888
Q ss_pred EeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcC
Q 003465 370 LDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 370 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 449 (818)
|++++|.+.+..+..|..+++|+.|++++|.+++. + .+++|+.|++++|+++ .+|.. ..+++.|++++|.+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL 413 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence 88888888877777788888888888888888742 2 3678888888888887 45543 46788899999998
Q ss_pred CccCChhh-hcCccccccccccEEECCCCcCcccCCcc----cccccC-------Cc-----ccCChhhcCCcCCCEEEC
Q 003465 450 SGMTPPQH-FKQKHSIRDRLLTYVNHQFNRLSGQIPMT----IGGLSK-------LS-----GSVPSEIGNCSGLLNVTL 512 (818)
Q Consensus 450 ~~~~p~~~-~~~~~~~~~~~L~~l~ls~n~l~g~~p~~----~~~~~~-------l~-----g~ip~~~~~l~~L~~L~L 512 (818)
++...... ..+. .|+.|++++|++++..+.. ...+.. ++ +..|..+..+++|+.|||
T Consensus 414 ~~l~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 414 ENLDILYFLLRVP------HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CSSTTHHHHTTCT------TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred ccCchhhhhhcCC------ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 87643322 2333 8999999999999654431 112211 22 455677899999999999
Q ss_pred CCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 513 SNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 513 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
++|++++.+|..+..+++|+.|+|++|++++..|......+....+.+|.-..
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCC
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCC
Confidence 99999999999999999999999999999986665433455555555654433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-46 Score=430.62 Aligned_cols=456 Identities=20% Similarity=0.212 Sum_probs=309.0
Q ss_pred CCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC
Q 003465 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 63 ~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
.|.|.|+ |+..+. .+..+|.. + .++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|
T Consensus 3 ~C~~~~~-c~~~~~-----------~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 3 SCDASGV-CDGRSR-----------SFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSE-EECTTS-----------CCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred cCCCCce-EECCCC-----------cccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh
Confidence 4999998 864321 12222433 3 2689999999999998888899999999999999999998888
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCC-CCccCCCCCCCCcEEEcccCcCCccC-CccccCC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCI-PLDFGNL 220 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l 220 (818)
..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..|.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 899999999999999999998777779999999999999999986 35678899999999999999844444 4679999
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcc-ccCCCCCcEEEccccccCCcC--C-cccCCCCCCC
Q 003465 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQE-IGYLENLVYLSLNVNNLTGPI--P-STLGRLTSLS 296 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~ 296 (818)
++|++|++++|.+++..+..+..+++|+.|++++|.+.. +|.. +..+++|++|++++|.+++.. + .....+++|+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 999999999999998888999999999999999988763 3433 356889999999999888642 1 1223456677
Q ss_pred EEEccCCcCCCCCch----hhcCCCCCCeeeccCCcCCCCc-----------------------------------Cccc
Q 003465 297 DLDLSHNSLFGPIPP----TLSHLTRLTTLKLFSNQINGSI-----------------------------------PLGI 337 (818)
Q Consensus 297 ~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~-----------------------------------~~~l 337 (818)
.|++++|.+.+..+. .+..+++|+.|++++|.+.+.. +..+
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 777777665543222 2233445555555554433210 0001
Q ss_pred cCCCCCCEEEcCCCcccccCCcCc-CCCCCCCEEeccCCcCCCCCC---cccCCCCCCCEEEccCCcCcccCC--ccccC
Q 003465 338 GNLENLERVDMSSNKLEGPIPLTI-GDLTNLIYLDLSLNQLSGPIP---STFGHLTLLKFLNLNSNKLNGSIP--SELMN 411 (818)
Q Consensus 338 ~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~ 411 (818)
...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+ ..+..
T Consensus 307 ~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 12345677777777765 445444 457777777777777776543 235667777777777777764422 34666
Q ss_pred CCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCccccccc
Q 003465 412 CFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491 (818)
Q Consensus 412 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~ 491 (818)
+++|++|++++|+++ .+|..+..+++|++|++++|.+++.. ..+. ..|+.|++++|++++.+
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~~--------~~L~~L~Ls~N~l~~~~-------- 447 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCIP--------QTLEVLDVSNNNLDSFS-------- 447 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTSC--------TTCSEEECCSSCCSCCC--------
T ss_pred CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chhc--------CCceEEECCCCChhhhc--------
Confidence 777777777777777 56666777777777777777776432 2111 15677777777776532
Q ss_pred CCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 492 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
+.+++|+.|||++|+++ .+|. .+.+++|++||+++|++++.+|. .....+....+.+|+..|
T Consensus 448 ----------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 448 ----------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp ----------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred ----------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 23445555555555554 3443 24455555555555555554443 223333444444554444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=428.93 Aligned_cols=437 Identities=21% Similarity=0.210 Sum_probs=345.0
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47999999999999988889999999999999999999887889999999999999999999878889999999999999
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcc----eEEEccCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL----NSLDLSSK 255 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~n 255 (818)
++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+..+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999987 468999999999999999999998777888888888 89999999
Q ss_pred CCCCCCCccccCCCCCcEEEccccc-------------------------------------------------------
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNN------------------------------------------------------- 280 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~------------------------------------------------------- 280 (818)
.+++..+..+... +|++|++++|.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998777776655 78888888762
Q ss_pred ---cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccC
Q 003465 281 ---LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPI 357 (818)
Q Consensus 281 ---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 357 (818)
+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 22334455556677777777777765 355556666 7777777777766 4443 35667777777777766544
Q ss_pred CcCcCCCCCCCEEeccCCcCCCCC--CcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCC-cccc
Q 003465 358 PLTIGDLTNLIYLDLSLNQLSGPI--PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIP-SEIR 434 (818)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~ 434 (818)
+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 43 56677777777777776543 45566777777777777777654333 6777777777777777765544 3566
Q ss_pred CCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCC
Q 003465 435 NLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSN 514 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~ 514 (818)
++++|++|++++|.+.+..|..+..+. .|+.|++++|.+++ +.+|..++.+++|+.|++++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~-------------~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQE-------------NFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGG-------------GEECSCCTTCTTCCEEECTT
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCC------cCcEEECcCCcCcc-------------ccchhhhhcccCCCEEECCC
Confidence 777777777777777776666555555 67777777777662 23444888999999999999
Q ss_pred CcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 515 NSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 515 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
|++++..|..++.+++|++|++++|++++..|. .....+....+.+|+..|
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999999999999999999999999999987775 334556666778888777
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6e-47 Score=442.81 Aligned_cols=433 Identities=20% Similarity=0.259 Sum_probs=372.8
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccc------c------CCCCCCCCCCCCcEEECcCCCCCCCCccc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT------G------TIPSKLGNLNNLVELYLSRSNLNGPIPST 168 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 168 (818)
.+++.|+|+++.+.|.+|++|+++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46899999999999999999999999999999999762 2 223222 45677 888888887777766
Q ss_pred cCC-------------------CCCCCEEEcc--CCCCCCCCccCCCCCCCCcEEEcccCcCCcc---------------
Q 003465 169 LGH-------------------LTRLSILDLS--SNSLVGPIPFTLGHLTQLTTLKLFSNQINGC--------------- 212 (818)
Q Consensus 169 l~~-------------------l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--------------- 212 (818)
+.. ...++.+.+. .|.+++ +|..++++++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 551 1122322232 578887 899999999999999999999985
Q ss_pred --CCcccc--CCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC-CCC-CCCccccCC------CCCcEEEccccc
Q 003465 213 --IPLDFG--NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ-LSG-PLPQEIGYL------ENLVYLSLNVNN 280 (818)
Q Consensus 213 --~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~ 280 (818)
+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 899999 99999999999999999999999999999999999998 988 788888776 999999999999
Q ss_pred cCCcCCc--ccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCC-CCEEEcCCCcccccC
Q 003465 281 LTGPIPS--TLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN-LERVDMSSNKLEGPI 357 (818)
Q Consensus 281 l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~ 357 (818)
++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.+. .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7888 89999999999999999998888 8999999999999999999 78888999999 999999999998 77
Q ss_pred CcCcCCCC--CCCEEeccCCcCCCCCCcccC-------CCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 358 PLTIGDLT--NLIYLDLSLNQLSGPIPSTFG-------HLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 358 ~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
|..+..++ +|+.|++++|.+++.+|..+. .+++|++|++++|.++...+..+..+++|+.|++++|.++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 88777655 899999999999999998888 8889999999999999544444667899999999999999 5
Q ss_pred CCccc-cCC-------CCCCEEECcCCcCCccCChhhh--cCccccccccccEEECCCCcCcccCCcccccccCCcccCC
Q 003465 429 IPSEI-RNL-------SYLHELDLSLNFISGMTPPQHF--KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVP 498 (818)
Q Consensus 429 ~p~~l-~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip 498 (818)
+|..+ ... ++|+.|++++|.++ .+|..+. .+. .|+.|++++|++++ +|.
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~------~L~~L~Ls~N~l~~-ip~------------- 530 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP------YLVGIDLSYNSFSK-FPT------------- 530 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT------TCCEEECCSSCCSS-CCC-------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC------CcCEEECCCCCCCC-cCh-------------
Confidence 66543 322 39999999999999 5676665 555 89999999999986 665
Q ss_pred hhhcCCcCCCEEEC------CCCcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 499 SEIGNCSGLLNVTL------SNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 499 ~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
.++++++|+.|+| ++|++.+.+|..++.+++|++|++++|++ +.||......+....+.+|+..|
T Consensus 531 -~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 531 -QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp -GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred -hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 7888999999999 56889999999999999999999999999 89998655677777788887776
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-45 Score=436.27 Aligned_cols=434 Identities=22% Similarity=0.262 Sum_probs=347.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecc-cCcccccCCCCCCCCC----CCCc--EEE---------C-cCCCCC-
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDL-SHNNLTGTIPSKLGNL----NNLV--ELY---------L-SRSNLN- 162 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l----~~L~--~L~---------L-s~n~l~- 162 (818)
.+++.|+|+++.+.|.+|+.|++|++|++|+| ++|.+.|..|...... ..++ .+. . ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999999999999999999999999 8898887644221111 0000 000 0 000000
Q ss_pred ----------CCCccccCCCCCCCEEEccC--CCCCCCCccCCCCCCCCcEEEcccCcCCc-----------------cC
Q 003465 163 ----------GPIPSTLGHLTRLSILDLSS--NSLVGPIPFTLGHLTQLTTLKLFSNQING-----------------CI 213 (818)
Q Consensus 163 ----------~~~p~~l~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~ 213 (818)
...+........++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00111112223344444443 67776 77788888888888888888887 48
Q ss_pred Ccccc--CCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC-CCC-CCCccccCC-------CCCcEEEccccccC
Q 003465 214 PLDFG--NLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ-LSG-PLPQEIGYL-------ENLVYLSLNVNNLT 282 (818)
Q Consensus 214 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~ 282 (818)
|..++ ++++|++|+|++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+ ++|++|+|++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88887 99999999999999999999999999999999999998 887 677766544 59999999999999
Q ss_pred CcCCc--ccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCC-CCEEEcCCCcccccCCc
Q 003465 283 GPIPS--TLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLEN-LERVDMSSNKLEGPIPL 359 (818)
Q Consensus 283 ~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~ 359 (818)
.+|. .++.+++|+.|+|++|.+. .+| .+..+++|+.|+|++|++. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8888 8999999999999999998 777 8999999999999999999 88988999999 999999999998 7788
Q ss_pred CcCCCCC--CCEEeccCCcCCCCCCccc---C--CCCCCCEEEccCCcCcccCCccc-cCCCCCCEEecccCcCcccCCc
Q 003465 360 TIGDLTN--LIYLDLSLNQLSGPIPSTF---G--HLTLLKFLNLNSNKLNGSIPSEL-MNCFSLQSLILSNNSLTGRIPS 431 (818)
Q Consensus 360 ~l~~l~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 431 (818)
.+..++. |+.|++++|.+.+.+|... . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|.++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 8777654 9999999999998766432 2 3458999999999999 566654 48899999999999999 6666
Q ss_pred cccC--------CCCCCEEECcCCcCCccCChhhh--cCccccccccccEEECCCCcCcccCCcccccccCCcccCChhh
Q 003465 432 EIRN--------LSYLHELDLSLNFISGMTPPQHF--KQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI 501 (818)
Q Consensus 432 ~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~ 501 (818)
.+.. +++|+.|+|++|+++ .+|..+. .+. .|+.|++++|++++ +|. .+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------~L~~L~Ls~N~L~~-lp~--------------~l 772 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------YLSNMDVSYNCFSS-FPT--------------QP 772 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------TCCEEECCSSCCSS-CCC--------------GG
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------CcCEEEeCCCCCCc-cch--------------hh
Confidence 5433 238999999999999 5677665 555 89999999999986 555 78
Q ss_pred cCCcCCCEEECCC------CcCccCCcccccCCCCCCeeeCcCCCCcccCCcccccCCCCCcccCcCCCC
Q 003465 502 GNCSGLLNVTLSN------NSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVPMINFSI 565 (818)
Q Consensus 502 ~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~n~~~~ 565 (818)
+.+++|+.|+|++ |++.+.+|..++.+++|+.|+|++|++ +.||......+....+.+|+...
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 8899999999977 889999999999999999999999999 89999655667777777876544
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-44 Score=411.69 Aligned_cols=411 Identities=22% Similarity=0.219 Sum_probs=263.0
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|+|++|.+.+..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 78888888888888777778888888888888888888777888888888888888888887 56655 7888888888
Q ss_pred cCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC--CEEEccCCcC--CCCCCCCCCCCC-cceEEEccC
Q 003465 181 SSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL--KEVDLSGNKL--NGPIASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 181 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~ 254 (818)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888876 467788888888888888888875 356667777 8888888888 666666666654 233455566
Q ss_pred CCCCCCCCc-cccCCCCCcEEEccccc-------cCCcCCcccCCCCCC---------------------------CEEE
Q 003465 255 KQLSGPLPQ-EIGYLENLVYLSLNVNN-------LTGPIPSTLGRLTSL---------------------------SDLD 299 (818)
Q Consensus 255 n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L---------------------------~~L~ 299 (818)
|.+.+.++. .+..+++|+.|++++|. +.+.+| .+..+++| ++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 665543332 33445566666666554 333333 34444444 4455
Q ss_pred ccCCcCCCCCchhh-----cCCCCCCeeeccCCcCCCCcC-ccccCC---CCCCEEEcCCCcccccCCcCcCCCCCCCEE
Q 003465 300 LSHNSLFGPIPPTL-----SHLTRLTTLKLFSNQINGSIP-LGIGNL---ENLERVDMSSNKLEGPIPLTIGDLTNLIYL 370 (818)
Q Consensus 300 Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 370 (818)
+++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 55554444444444 4444555555555444 223 122222 34555555555544221 11455666666
Q ss_pred eccCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEecccCcCcccCCcc-ccCCCCCCEEECcCC
Q 003465 371 DLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQSLILSNNSLTGRIPSE-IRNLSYLHELDLSLN 447 (818)
Q Consensus 371 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N 447 (818)
++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|.. +..+++|+.|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 666666666666666666666666666666664 34455666666666666666666534443 556666666666666
Q ss_pred cCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc-cc
Q 003465 448 FISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE-MG 526 (818)
Q Consensus 448 ~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 526 (818)
.+++..|..+. . .|+.|++++|+++ .+| ..+..+++|+.|++++|+++. +|.. +.
T Consensus 410 ~l~~~~~~~l~--~------~L~~L~Ls~N~l~-~ip--------------~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 465 (520)
T 2z7x_B 410 ILTDTIFRCLP--P------RIKVLDLHSNKIK-SIP--------------KQVVKLEALQELNVASNQLKS-VPDGIFD 465 (520)
T ss_dssp CCCGGGGGSCC--T------TCCEEECCSSCCC-CCC--------------GGGGGCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred CCCcchhhhhc--c------cCCEEECCCCccc-ccc--------------hhhhcCCCCCEEECCCCcCCc-cCHHHhc
Confidence 66655443332 1 5666666666665 333 355567777777777777773 4443 67
Q ss_pred CCCCCCeeeCcCCCCcccCC
Q 003465 527 KIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 527 ~l~~L~~L~ls~N~l~g~ip 546 (818)
.+++|++|++++|++++..+
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccEEECcCCCCcccCC
Confidence 77777777777777776655
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-43 Score=406.65 Aligned_cols=429 Identities=22% Similarity=0.233 Sum_probs=348.1
Q ss_pred CcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
..+.+++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 344677777777 5666554 7999999999999988889999999999999999999988889999999999999999
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCC-CCCCCCCCcceEEEccCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPI-ASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 99998888779999999999999999986 35678999999999999999854444 46899999999999999999998
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCC--c-hhhcCCCCCCeeeccCCcCCCCcC---
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI--P-PTLSHLTRLTTLKLFSNQINGSIP--- 334 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~--- 334 (818)
.|..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+..+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 9999999999999999999987433333456899999999999998742 1 223457899999999999876443
Q ss_pred -ccccCCCCCCEEEcCCCcccccCC---------cCc--------------------------CCCCCCCEEeccCCcCC
Q 003465 335 -LGIGNLENLERVDMSSNKLEGPIP---------LTI--------------------------GDLTNLIYLDLSLNQLS 378 (818)
Q Consensus 335 -~~l~~l~~L~~L~Ls~n~l~~~~~---------~~l--------------------------~~l~~L~~L~Ls~n~l~ 378 (818)
..+..+++|+.+++++|.+.+... ..+ ...++|+.|++++|.+.
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 334667888999998888765211 001 11357888999999887
Q ss_pred CCCCccc-CCCCCCCEEEccCCcCcccCCc---cccCCCCCCEEecccCcCcccCC--ccccCCCCCCEEECcCCcCCcc
Q 003465 379 GPIPSTF-GHLTLLKFLNLNSNKLNGSIPS---ELMNCFSLQSLILSNNSLTGRIP--SEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 379 ~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
.+|..+ ..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-
Confidence 456554 6799999999999999987643 47789999999999999986432 458899999999999999995
Q ss_pred CChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCC
Q 003465 453 TPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532 (818)
Q Consensus 453 ~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 532 (818)
+|..+.... .|+.|++++|.+++ +|. .+| ++|+.||+++|++++.+ +.+++|+
T Consensus 402 lp~~~~~~~------~L~~L~Ls~N~l~~-l~~----------~~~------~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 402 MPDSCQWPE------KMRFLNLSSTGIRV-VKT----------CIP------QTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp CCSCCCCCT------TCCEEECTTSCCSC-CCT----------TSC------TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred CChhhcccc------cccEEECCCCCccc-ccc----------hhc------CCceEEECCCCChhhhc----ccCChhc
Confidence 465555444 89999999999873 222 122 58999999999999864 5789999
Q ss_pred eeeCcCCCCcccCCc-ccccCCCCCcccCcCCC
Q 003465 533 YLDLSYNNIPGTVPE-FINRIMPADLVPMINFS 564 (818)
Q Consensus 533 ~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~ 564 (818)
+|++++|+++ .||. .....+....+.+|...
T Consensus 455 ~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 455 ELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp EEECCSSCCS-SCCCGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCccC-cCCCcccCccCCEEecCCCccC
Confidence 9999999998 7887 44555666666676443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=407.38 Aligned_cols=426 Identities=20% Similarity=0.204 Sum_probs=317.2
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
++|++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999999 5777666 89999999999999887789999999999999999999888999999999999999999
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcc--eEEEccCCCC--C
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNL--NSLDLSSKQL--S 258 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 258 (818)
.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56665 89999999999999987 478899999999999999999976 356667777 9999999999 7
Q ss_pred CCCCccccCCC-CCcEEEccccccCCcCCc-ccCCCCCCCEEEccCCc-------CCCCCchhhcCCCCCCeeeccCCcC
Q 003465 259 GPLPQEIGYLE-NLVYLSLNVNNLTGPIPS-TLGRLTSLSDLDLSHNS-------LFGPIPPTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 259 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l 329 (818)
+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 77888777665 344678888888776554 56789999999999987 444443 566677777777766665
Q ss_pred CCCcCcccc---CCCCCCEEEcCCCcccccCCcCc-----CCCCCCCEEeccCCcC------------------------
Q 003465 330 NGSIPLGIG---NLENLERVDMSSNKLEGPIPLTI-----GDLTNLIYLDLSLNQL------------------------ 377 (818)
Q Consensus 330 ~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l------------------------ 377 (818)
.+..+..+. ..++|+.|++++|++.+.+|..+ ..+++|+.+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 542221110 13466666666666666666655 5555555555555554
Q ss_pred --CCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcc--cCCccccCCCCCCEEECcCCcCCccC
Q 003465 378 --SGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG--RIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 378 --~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
.... .+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 3211 11456677777777777776666667777777777777777765 44455667777777777777776644
Q ss_pred Chh-hhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCC
Q 003465 454 PPQ-HFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE 532 (818)
Q Consensus 454 p~~-~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 532 (818)
|.. +.... .|+.|++++|++++.+|. .+. ++|+.||+++|+++ .+|..+..+++|+
T Consensus 391 ~~~~~~~l~------~L~~L~Ls~N~l~~~~~~--------------~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 391 KKGDCSWTK------SLLSLNMSSNILTDTIFR--------------CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp GGCSCCCCT------TCCEEECCSSCCCGGGGG--------------SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred ccchhccCc------cCCEEECcCCCCCcchhh--------------hhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 443 22222 667777777777655443 333 68999999999998 7888888999999
Q ss_pred eeeCcCCCCcccCCccc---ccCCCCCcccCcCCCC
Q 003465 533 YLDLSYNNIPGTVPEFI---NRIMPADLVPMINFSI 565 (818)
Q Consensus 533 ~L~ls~N~l~g~ip~~~---~~~~~~~~~~~n~~~~ 565 (818)
+|++++|+++ .+|... ...+....+.+|+..|
T Consensus 448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 9999999998 577632 2344455566776655
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=375.63 Aligned_cols=354 Identities=21% Similarity=0.220 Sum_probs=267.1
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC-CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI-PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999999988999999999999999999997555 56799999999999999999988899999999999999
Q ss_pred ccCCCCCCCCccC--CCCCCCCcEEEcccCcCCccCCcc-ccCCCCCCEEEccCCcCCCCCCCCCCCC--CcceEEEccC
Q 003465 180 LSSNSLVGPIPFT--LGHLTQLTTLKLFSNQINGCIPLD-FGNLRHLKEVDLSGNKLNGPIASTIGDL--TNLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~ 254 (818)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|++.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887776 8899999999999999998888888766 7899999999
Q ss_pred CCCCCCCCccc--------cCCCCCcEEEccccccCCcCCcccCC---CCCCCEEEccCCcCCCCCc----------hhh
Q 003465 255 KQLSGPLPQEI--------GYLENLVYLSLNVNNLTGPIPSTLGR---LTSLSDLDLSHNSLFGPIP----------PTL 313 (818)
Q Consensus 255 n~l~~~~~~~l--------~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~Ls~n~l~~~~~----------~~l 313 (818)
|.+.+..+..+ ..+++|++|++++|.+++..|..+.. .++|+.|++++|...+... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 99987554432 35678999999999988777665543 3788999998886553211 111
Q ss_pred c--CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCC
Q 003465 314 S--HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLL 391 (818)
Q Consensus 314 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 391 (818)
. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 12456666666666666556666666666666666666665555566666666666666666665555566666666
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 392 KFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 392 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666666665556666666666666666666665444445566666666666666665554
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.7e-40 Score=385.15 Aligned_cols=436 Identities=22% Similarity=0.218 Sum_probs=287.7
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|||++|.+++..+.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 57888888888877777778888888888888888876666678888888888888888876666677888888888888
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCc-cCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCc----ceEEEccCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQING-CIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTN----LNSLDLSSKQ 256 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----L~~L~L~~n~ 256 (818)
+|.+++..+..|+++++|++|++++|.++. ..|..++.+++|++|++++|++++..+..+..+.+ +..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 888876666667888888888888888765 34666777888888888888777655554433222 2244455444
Q ss_pred CCCCCCccc------------------------cCC--------------------------------------------
Q 003465 257 LSGPLPQEI------------------------GYL-------------------------------------------- 268 (818)
Q Consensus 257 l~~~~~~~l------------------------~~l-------------------------------------------- 268 (818)
++...+..+ ..+
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 432211111 111
Q ss_pred -------------CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 269 -------------ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 269 -------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
.+++.+.+..+.+... ..+.....|+.|++.+|.+....+ ..++.|+.+++..|.+... .
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~ 365 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--F 365 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--C
T ss_pred ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--c
Confidence 1222222222222211 112333455566666655543322 2344555556555554422 2
Q ss_pred cccCCCCCCEEEcCCCcccc--cCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCC-ccccCC
Q 003465 336 GIGNLENLERVDMSSNKLEG--PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIP-SELMNC 412 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l 412 (818)
....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|......+ ..+..+
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence 23457788888888887753 344455567778888888777664 34456677888888888776654443 346677
Q ss_pred CCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCc-cCChhhhcCccccccccccEEECCCCcCcccCCccccccc
Q 003465 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISG-MTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLS 491 (818)
Q Consensus 413 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~ 491 (818)
.+++.++++.|.+.+..+..+..++.|+.|++++|.+.. ..|..+..+. .|+.|++++|++++..|.
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------~L~~L~Ls~N~L~~l~~~------ 512 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPT------ 512 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTT------
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------ccCEEECCCCccCCcChH------
Confidence 788888888888877777777778888888888876443 3444444444 678888888887766554
Q ss_pred CCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCccc---ccCCCCCcccCcCCCC
Q 003465 492 KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVPMINFSI 565 (818)
Q Consensus 492 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~---~~~~~~~~~~~n~~~~ 565 (818)
.|+++++|+.|+|++|+|++..|..++.+++|++|||++|++++..|+.. ...+....+.+|+..|
T Consensus 513 --------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 513 --------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp --------TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred --------HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 67777888888888888888777788888888888888888887777622 2345556677787777
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=384.55 Aligned_cols=412 Identities=21% Similarity=0.209 Sum_probs=308.8
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 78999999999999888889999999999999999999888999999999999999999998 56765 8999999999
Q ss_pred cCCCCCC-CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCC--CEEEccCCcC--CCCCCCCCCCCC-cceEEEccC
Q 003465 181 SSNSLVG-PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHL--KEVDLSGNKL--NGPIASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 181 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~ 254 (818)
++|.+++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..+..+..+. ..-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3467899999999999999999863 45555666 9999999999 777777776654 122446666
Q ss_pred CCCCCCCCc-cccCCCCCcEEEcccccc-----CCcCCcccCCC---------------------------CCCCEEEcc
Q 003465 255 KQLSGPLPQ-EIGYLENLVYLSLNVNNL-----TGPIPSTLGRL---------------------------TSLSDLDLS 301 (818)
Q Consensus 255 n~l~~~~~~-~l~~l~~L~~L~L~~n~l-----~~~~~~~l~~l---------------------------~~L~~L~Ls 301 (818)
|.+.+.++. .+..+++|+.|++++|.. .+. ...+..+ ++|++|+++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 666654433 234456666666666531 100 0112222 366666666
Q ss_pred CCcCCCCCchhh-----cCCCCCCeeeccCCcCCCCcCc-ccc---CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEec
Q 003465 302 HNSLFGPIPPTL-----SHLTRLTTLKLFSNQINGSIPL-GIG---NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDL 372 (818)
Q Consensus 302 ~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~-~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 372 (818)
+|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|+.|++++|.+.... ....+++|++|++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 666666666554 4444444444444444 2331 111 1256888888888775322 1267888999999
Q ss_pred cCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEecccCcCcccCCc-cccCCCCCCEEECcCCcC
Q 003465 373 SLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQSLILSNNSLTGRIPS-EIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 373 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l 449 (818)
++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999988888888889999999999999886 3346678889999999999999874554 477888999999999998
Q ss_pred CccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccc-ccCC
Q 003465 450 SGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLE-MGKI 528 (818)
Q Consensus 450 ~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l 528 (818)
++..|..+. . .|+.|++++|+++ .+|. .+..+++|+.|+|++|+++. +|.. +..+
T Consensus 441 ~~~~~~~l~--~------~L~~L~L~~N~l~-~ip~--------------~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l 496 (562)
T 3a79_B 441 TGSVFRCLP--P------KVKVLDLHNNRIM-SIPK--------------DVTHLQALQELNVASNQLKS-VPDGVFDRL 496 (562)
T ss_dssp CGGGGSSCC--T------TCSEEECCSSCCC-CCCT--------------TTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred Ccchhhhhc--C------cCCEEECCCCcCc-ccCh--------------hhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence 876654432 2 7889999999887 3443 66688999999999999984 5554 8899
Q ss_pred CCCCeeeCcCCCCcccCCc
Q 003465 529 IFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 529 ~~L~~L~ls~N~l~g~ip~ 547 (818)
++|++|++++|++.+..|.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 9999999999999887765
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-40 Score=370.30 Aligned_cols=382 Identities=21% Similarity=0.228 Sum_probs=254.4
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCC-ccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPI-PSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 182 (818)
+.++.+++.++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777766 4454 32 68899999999998877888889999999999998887544 56788888999999999
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCcc--ccCCCCCCEEEccCCcCCCCCCCC-CCCCCcceEEEccCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLD--FGNLRHLKEVDLSGNKLNGPIAST-IGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~ 259 (818)
|.+++..|..++++++|++|++++|.+++..+.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888777888888888888888888888754444 788888888888888888766665 7788888888888888887
Q ss_pred CCCccccCC--CCCcEEEccccccCCcCCccc--------CCCCCCCEEEccCCcCCCCCchhhcCC---CCCCeeeccC
Q 003465 260 PLPQEIGYL--ENLVYLSLNVNNLTGPIPSTL--------GRLTSLSDLDLSHNSLFGPIPPTLSHL---TRLTTLKLFS 326 (818)
Q Consensus 260 ~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~ 326 (818)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777766654 577777887777775443322 244566666666666655555444332 4555555555
Q ss_pred CcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC--CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCccc
Q 003465 327 NQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG--DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGS 404 (818)
Q Consensus 327 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 404 (818)
|.+.+... ..+.+.+..+..+. ..++|+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 249 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 54432110 11111111111111 123455555555555554455555555555555555555544
Q ss_pred CCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCC
Q 003465 405 IPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484 (818)
Q Consensus 405 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p 484 (818)
.|..+..+++|+.|++++|.+++..|..+..+++|+.|++++ |++++..|
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------------------------------N~l~~~~~ 364 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY------------------------------NHIRALGD 364 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS------------------------------SCCCEECT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC------------------------------CcccccCh
Confidence 444455555555555555555444444444455555555544 44443333
Q ss_pred cccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 485 ~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
. .++.+++|+.|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 365 ~--------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 365 Q--------------SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp T--------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred h--------------hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 3 677788999999999999987777889999999999999999999985
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-39 Score=359.43 Aligned_cols=377 Identities=23% Similarity=0.280 Sum_probs=269.6
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCC-------------cEEECcCCCCCCCC
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNL-------------VELYLSRSNLNGPI 165 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~~ 165 (818)
..++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 457899999999999 7899999999999999999999999999999988875 999999999985 4
Q ss_pred ccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCC
Q 003465 166 PSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLT 245 (818)
Q Consensus 166 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 245 (818)
|.. .++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|++++ +| .+.+++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 542 3789999999999986 5643 47899999999998852 221 2689999999999986 56 599999
Q ss_pred cceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeecc
Q 003465 246 NLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLF 325 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 325 (818)
+|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. .++|+.|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 99999999999985 5544 3589999999999996 56 58899999999999999986 3432 3589999999
Q ss_pred CCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccC
Q 003465 326 SNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSI 405 (818)
Q Consensus 326 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 405 (818)
+|.+. .+| .++.+++|+.|++++|++.+ +|. .+++|+.|++++|.+++ +|.. .++|+.|++++|.+++.
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-
Confidence 99998 677 48899999999999999985 443 24789999999999986 4443 47899999999999862
Q ss_pred CccccCCCCCCEEecccCcCcccCCccccCC-CCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCC
Q 003465 406 PSELMNCFSLQSLILSNNSLTGRIPSEIRNL-SYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIP 484 (818)
Q Consensus 406 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p 484 (818)
|. ..++|+.|++++|.+++ ++ .+ ++|+.|++++|++++. |..+ . .|+.|++++|++++ +|
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l-p~~~---~------~L~~L~L~~N~l~~-lp 353 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL-PALP---P------RLERLIASFNHLAE-VP 353 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC-CCCC---T------TCCEEECCSSCCSC-CC
T ss_pred cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc-cccC---C------cCCEEECCCCcccc-cc
Confidence 22 12689999999999985 22 23 5899999999999874 4331 2 78999999998883 33
Q ss_pred cccccccCCcccCChhhcCCcCCCEEECCCCcCcc--CCcccccCC-------------CCCCeeeCcCCCCcc--cCCc
Q 003465 485 MTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDG--TIPLEMGKI-------------IFLEYLDLSYNNIPG--TVPE 547 (818)
Q Consensus 485 ~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~g--~ip~ 547 (818)
. .+++|+.|++++|++++ .+|..++.+ ++|++||+++|+++| .+|.
T Consensus 354 ~-----------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 354 E-----------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp C-----------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred c-----------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 2 35789999999999999 888888887 789999999999988 7775
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-38 Score=370.63 Aligned_cols=422 Identities=22% Similarity=0.195 Sum_probs=320.0
Q ss_pred cCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCC
Q 003465 116 NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGH 195 (818)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 195 (818)
.+|..+. +++++|||++|+|++..+.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3454442 47999999999999877789999999999999999999877888999999999999999999777778999
Q ss_pred CCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC-CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCC----
Q 003465 196 LTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLEN---- 270 (818)
Q Consensus 196 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---- 270 (818)
+++|++|++++|++++..+..|+++++|++|++++|.++. ..|..+..+++|++|++++|++++..+..+..+.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999998877889999999999999999976 35778889999999999999999887777765443
Q ss_pred CcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCC------------------------------------------
Q 003465 271 LVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGP------------------------------------------ 308 (818)
Q Consensus 271 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~------------------------------------------ 308 (818)
+..++++.|.++...+..+ ....++.+++.+|.....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 3467788887764333322 222334444443321100
Q ss_pred ----------------Cc----------------------hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCC
Q 003465 309 ----------------IP----------------------PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS 350 (818)
Q Consensus 309 ----------------~~----------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 350 (818)
.. ..+.....|+.|++.+|.+....+ ..++.|+.+++..
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEES
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhccccc
Confidence 00 011222334444444444432211 1234455555555
Q ss_pred CcccccCCcCcCCCCCCCEEeccCCcCCC--CCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 351 NKLEGPIPLTIGDLTNLIYLDLSLNQLSG--PIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 351 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
|.+.. +.....+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.... .+..+..+++|+.++++.|.....
T Consensus 359 n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 359 NKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred ccCCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 55432 2234568899999999998863 345566778899999999998874 456688899999999999987655
Q ss_pred CC-ccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCC
Q 003465 429 IP-SEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGL 507 (818)
Q Consensus 429 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L 507 (818)
.+ ..+..+++++.++++.|.+.+..+..+.... .++.|++++|.+... .+|..++.+++|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~------~L~~L~Ls~N~~~~~-------------~~~~~~~~l~~L 496 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQEN-------------FLPDIFTELRNL 496 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGG-------------EECSCCTTCTTC
T ss_pred ccccccccccccccccccccccccccccccccch------hhhhhhhhhcccccc-------------cCchhhhhcccc
Confidence 44 4578899999999999999998877666665 899999999986543 223478889999
Q ss_pred CEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc--ccccCCCCCcccCcCCCC
Q 003465 508 LNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE--FINRIMPADLVPMINFSI 565 (818)
Q Consensus 508 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~--~~~~~~~~~~~~~n~~~~ 565 (818)
+.|||++|++++.+|..|+.+++|++|+|++|++++..|. .....+....+.+|....
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 9999999999999999999999999999999999987775 334556666677775444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.8e-38 Score=348.89 Aligned_cols=390 Identities=25% Similarity=0.309 Sum_probs=279.2
Q ss_pred CCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcC-------------ceecccCcccccCCCCCCCCCCCCcEEECcC
Q 003465 92 LDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKL-------------QILDLSHNNLTGTIPSKLGNLNNLVELYLSR 158 (818)
Q Consensus 92 l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 158 (818)
+|.. +.++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.. .++|++|++++
T Consensus 26 iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 26 MPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCS
T ss_pred CChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccC
Confidence 3665 9999999999999999999999999999875 999999999985 4542 37899999999
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCC
Q 003465 159 SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA 238 (818)
Q Consensus 159 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 238 (818)
|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|++++ +| .++++++|++|++++|++++ +|
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 99996 6753 4799999999999985 3321 2799999999999996 66 69999999999999999986 45
Q ss_pred CCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC
Q 003465 239 STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318 (818)
Q Consensus 239 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 318 (818)
..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .+..+++
T Consensus 170 ~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~ 238 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPF 238 (454)
T ss_dssp CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred CCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCC
Confidence 443 599999999999997 55 68999999999999999995 5543 368999999999998 566 4889999
Q ss_pred CCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccC
Q 003465 319 LTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNS 398 (818)
Q Consensus 319 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 398 (818)
|+.|++++|++.+ +|. .+++|+.|++++|++.+ +|.. +++|+.|++++|.+++. +.. .++|+.|++++
T Consensus 239 L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~ 306 (454)
T 1jl5_A 239 LTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASS 306 (454)
T ss_dssp CCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcC
Confidence 9999999999985 554 24899999999999986 4443 47999999999999863 211 26899999999
Q ss_pred CcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCc
Q 003465 399 NKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478 (818)
Q Consensus 399 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~ 478 (818)
|.+++ ++. ..++|+.|++++|++++ +|.. +++|+.|++++|.+++. |. ... .|+.|++++|+
T Consensus 307 N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~------~L~~L~L~~N~ 368 (454)
T 1jl5_A 307 NEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQ------NLKQLHVEYNP 368 (454)
T ss_dssp SCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCT------TCCEEECCSSC
T ss_pred CcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhh------hccEEECCCCC
Confidence 99985 222 12589999999999996 6654 58999999999999964 44 223 89999999999
Q ss_pred Ccc--cCCccccccc--CCcccCChhhcCCcCCCEEECCCCcCcc--CCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 479 LSG--QIPMTIGGLS--KLSGSVPSEIGNCSGLLNVTLSNNSLDG--TIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 479 l~g--~~p~~~~~~~--~l~g~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
+++ .+|..+..+. .+.|.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 369 l~~l~~ip~~l~~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 369 LREFPDIPESVEDLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp CSSCCCCCTTCCEEECCC---------------------------------------------------------
T ss_pred CCcCCCChHHHHhhhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 999 8888877653 366777763 5789999999999998 77764 56677888988887764
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=359.25 Aligned_cols=421 Identities=20% Similarity=0.169 Sum_probs=334.1
Q ss_pred ccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCC
Q 003465 66 WAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKL 145 (818)
Q Consensus 66 w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 145 (818)
+.++..+....++.|++.+- .+..+++.+|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++ .+|..
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~- 118 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC- 118 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-
T ss_pred CccCCCCCCCCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-
Confidence 33343333356778888431 133345556999999999999999999999999999999999999999999 56766
Q ss_pred CCCCCCcEEECcCCCCCC-CCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC--cEEEcccCcC--CccCCccccCC
Q 003465 146 GNLNNLVELYLSRSNLNG-PIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL--TTLKLFSNQI--NGCIPLDFGNL 220 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l 220 (818)
.+++|++|++++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 89999999999999986 3468999999999999999999864 44555555 9999999999 88888888776
Q ss_pred C--CCCEEEccCCcCCCCCCC-CCCCCCcceEEEccCCCCC----------------------------CC----CCccc
Q 003465 221 R--HLKEVDLSGNKLNGPIAS-TIGDLTNLNSLDLSSKQLS----------------------------GP----LPQEI 265 (818)
Q Consensus 221 ~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~----------------------------~~----~~~~l 265 (818)
. .+ .+++++|.+.+.++. .+..+++|+.|++++|... +. ++..
T Consensus 195 ~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~- 272 (562)
T 3a79_B 195 NTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF- 272 (562)
T ss_dssp CEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-
T ss_pred CcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-
Confidence 5 33 567888887764443 4567788888888887411 00 0011
Q ss_pred cCCCCCcEEEccccccCCcCCccc-----CCCCCCCEEEccCCcCCCCCc-hhhc---CCCCCCeeeccCCcCCCCcCcc
Q 003465 266 GYLENLVYLSLNVNNLTGPIPSTL-----GRLTSLSDLDLSHNSLFGPIP-PTLS---HLTRLTTLKLFSNQINGSIPLG 336 (818)
Q Consensus 266 ~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~l~---~l~~L~~L~L~~n~l~~~~~~~ 336 (818)
...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|+.|++++|.+.... .
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--C
Confidence 123489999999999998888877 6777777777777776 344 3332 2368999999999986432 1
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCC--CCcccCCCCCCCEEEccCCcCcccCCc-cccCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGP--IPSTFGHLTLLKFLNLNSNKLNGSIPS-ELMNCF 413 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 413 (818)
...+++|+.|++++|.+.+..|..+..+++|+.|++++|++++. +|..+..+++|++|++++|.+++.+|. .+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 26789999999999999998899999999999999999999974 356789999999999999999985655 478899
Q ss_pred CCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCC
Q 003465 414 SLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKL 493 (818)
Q Consensus 414 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l 493 (818)
+|+.|++++|++++.+|..+. ++|+.|++++|+++. +|..++.+. .|+.|++++|+++ .+|..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~------~L~~L~L~~N~l~-~l~~~------- 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQ------ALQELNVASNQLK-SVPDG------- 491 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSC------CCSEEECCSSCCC-CCCTT-------
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCC------CCCEEECCCCCCC-CCCHH-------
Confidence 999999999999987776554 799999999999984 566666666 8999999999998 45541
Q ss_pred cccCChhhcCCcCCCEEECCCCcCccCCcc
Q 003465 494 SGSVPSEIGNCSGLLNVTLSNNSLDGTIPL 523 (818)
Q Consensus 494 ~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 523 (818)
.++.+++|+.|++++|.+++..|.
T Consensus 492 ------~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 492 ------VFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp ------STTTCTTCCCEECCSCCBCCCHHH
T ss_pred ------HHhcCCCCCEEEecCCCcCCCcch
Confidence 278899999999999999987763
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-37 Score=347.47 Aligned_cols=358 Identities=23% Similarity=0.208 Sum_probs=264.1
Q ss_pred CcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.+..+++|++|++++|.+.+. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 367788888999988888864 4 688888899999998888864 3 78888888999988888864 3 7888888
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
++|++++|.+++. + ++.+++|++|++++|++++. .++++++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 8888888888863 3 78888888888888888863 3778888888888888655444 4777888888888888
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
.+++ +| +..+++|++|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 8886 33 77788888888888888864 37778888888888888876 44 677888888888888887643
Q ss_pred cccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 003465 336 GIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL 415 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 415 (818)
++.+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 456677777777665 34566777777666665 45677788888888877666653 23445
Q ss_pred CEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcc
Q 003465 416 QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSG 495 (818)
Q Consensus 416 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g 495 (818)
+.|++++| ++|+.|++++|++++. + +..+. .|+.|++++|++++
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~------~L~~L~l~~N~l~~-------------- 353 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT------KLKSLSCVNAHIQD-------------- 353 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT------TCSEEECCSSCCCB--------------
T ss_pred eEechhhc-------------ccCCEEECCCCccccc-c--cccCC------cCcEEECCCCCCCC--------------
Confidence 55544443 5677777777777774 2 34444 67777777777764
Q ss_pred cCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCccc
Q 003465 496 SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI 549 (818)
Q Consensus 496 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 549 (818)
++.|..|++++|.++|. +.+..|..+++++|+++|.||...
T Consensus 354 --------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 --------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp --------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred --------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 12344456777777775 345667888888888888888643
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-36 Score=342.87 Aligned_cols=346 Identities=30% Similarity=0.418 Sum_probs=269.4
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++++++|+++++.+.. +| .+..+++|++|+|++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35678888888888764 44 47888899999999998886543 8888899999999998885544 8888899999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++..+ +.++++|++|++++|.+.+. + .+.++++|++|+++ |.+.+.. .+.++++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999988886533 78888999999998888753 3 47888889998886 4444332 3788888889999888887
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+. ..+..+++|++|++++|.+++..| ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 53 347788888888888888886544 66788888888888888753 457788888888888888876544 77
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 88888888888888876443 7788888888888888886544 6778888888888888887655 6778888888
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSG 481 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g 481 (818)
++++|++++. ..+.++++|+.|++++|++++..| +..+. .|+.|++++|.+++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT------RITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT------TCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC------CCCEEeccCCcccC
Confidence 8888888754 467788888888888888887765 44444 67777888777776
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-37 Score=343.81 Aligned_cols=353 Identities=22% Similarity=0.226 Sum_probs=278.2
Q ss_pred CCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEE
Q 003465 75 GSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVEL 154 (818)
Q Consensus 75 ~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 154 (818)
.+++.+++.+- .+..++ .+..+++|++|++++|.+++. | ++.+++|++|+|++|.+++. + ++++++|++|
T Consensus 42 ~~L~~L~Ls~n--~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNS--SITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSS--CCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred CCCCEEEccCC--CcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 35677777431 122223 389999999999999999974 4 89999999999999999974 3 8999999999
Q ss_pred ECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCC
Q 003465 155 YLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 155 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 234 (818)
++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|+++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999999996 44 89999999999999999974 3889999999999999665555 5889999999999999998
Q ss_pred CCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhc
Q 003465 235 GPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLS 314 (818)
Q Consensus 235 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 314 (818)
+. + +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+.. +.
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~ 251 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VS 251 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HH
Confidence 74 3 88899999999999999975 48889999999999999997 55 889999999999999998764 45
Q ss_pred CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 315 HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|
T Consensus 252 ~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L 312 (457)
T 3bz5_A 252 TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITEL 312 (457)
T ss_dssp TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCC
T ss_pred HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEe
Confidence 6788888888765 35567788887776665 46778888888888887766663 33455555
Q ss_pred EccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEEC
Q 003465 395 NLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNH 474 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~l 474 (818)
++++| ++|+.|++++|++++. + +.++++|+.|++++|++++. + .|..+++
T Consensus 313 ~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~-------------~L~~L~l 362 (457)
T 3bz5_A 313 DLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-S-------------SVGKIPA 362 (457)
T ss_dssp CCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-T-------------TGGGSSG
T ss_pred chhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-c-------------ccccccc
Confidence 55443 5777888888888763 2 67778888888888887763 1 3445566
Q ss_pred CCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccc
Q 003465 475 QFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEM 525 (818)
Q Consensus 475 s~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 525 (818)
+.|.++|. +.+..|..+++++|+++|.+|..+
T Consensus 363 ~~n~l~g~-------------------~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 363 LNNNFEAE-------------------GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GGTSEEEE-------------------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cCCcEEec-------------------ceeeecCccccccCcEEEEcChhH
Confidence 77777654 234456667788888888877654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=340.09 Aligned_cols=347 Identities=29% Similarity=0.400 Sum_probs=212.2
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
..+++|+.|+++++.+.. +| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346778888888888773 44 377788888888888888754 33 7788888888888888775544 777888888
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEcccccc
Q 003465 202 LKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNL 281 (818)
Q Consensus 202 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 281 (818)
|++++|.+++..+ +.++++|++|++++|.+.+. ..+..+++|+.|+++ |.+.+. ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 8888887775432 77777777777777777642 236666777777765 333322 1255666666666666665
Q ss_pred CCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCc
Q 003465 282 TGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI 361 (818)
Q Consensus 282 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 361 (818)
++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+. ..+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 532 224555666666666665554433 44555555555555555432 234445555555555555543322 4
Q ss_pred CCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCE
Q 003465 362 GDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHE 441 (818)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 441 (818)
..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--------------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--------------------------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccCcccc--------------------------ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 444455555555554443322 4444455555555555443222 444555555
Q ss_pred EECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCC
Q 003465 442 LDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTI 521 (818)
Q Consensus 442 L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~ 521 (818)
|++++|++++..| +..+. .|+.|++++|.+++. ..++.+++|+.|++++|++++.+
T Consensus 314 L~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLT------KLQRLFFYNNKVSDV----------------SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp EECCSSCCSCCGG--GGGCT------TCCEEECCSSCCCCC----------------GGGTTCTTCCEEECCSSCCCBCG
T ss_pred EECcCCcCCCchh--hccCc------cCCEeECCCCccCCc----------------hhhccCCCCCEEeCCCCccCccc
Confidence 5555555554433 22222 455555555555432 14667888999999999999888
Q ss_pred cccccCCCCCCeeeCcCCCCcc
Q 003465 522 PLEMGKIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 522 p~~l~~l~~L~~L~ls~N~l~g 543 (818)
| +..+++|+.|++++|++++
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEEC
T ss_pred h--hhcCCCCCEEeccCCcccC
Confidence 7 8889999999999999887
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-37 Score=331.06 Aligned_cols=290 Identities=30% Similarity=0.504 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHcCCC-----CCCCCCCCCCCCCCCC--ccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEE
Q 003465 35 VPIRLEREALLNTGW-----WNNSREKASNHSDHCK--WAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFR 107 (818)
Q Consensus 35 ~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~~c~--w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~ 107 (818)
.|.+.|++||++++. ..+++|. .+.|||. |.||.|+..+ ...++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~--~~~~~C~~~w~gv~C~~~~-----------------------~~~~l~~L~ 56 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWL--PTTDCCNRTWLGVLCDTDT-----------------------QTYRVNNLD 56 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCC--TTSCTTTTCSTTEEECCSS-----------------------SCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCC--CCCCCCcCCCcceEeCCCC-----------------------CCceEEEEE
Confidence 488899999997532 1346785 3678998 9999997431 011355666
Q ss_pred cCCCCCcc--cCCccccCCCcCceecccC-cccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCC
Q 003465 108 IWYSNISG--NIPSEIGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184 (818)
Q Consensus 108 L~~n~~~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 184 (818)
|++|.+.+ .+|..|+++++|++|+|++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.
T Consensus 57 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence 67777777 7777888888888888884 77777778778888888888888888877777778888888888888887
Q ss_pred CCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCC-CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 185 LVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLR-HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 185 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
+++.+|..+..+++|++|++++|++++.+|..+.+++ +|++|++++|++++..|..+..++ |+.|++++|.+++..|.
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH
Confidence 7777777777777777777777777777777777776 677777777776666666665554 66666666666555555
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 343 (818)
.+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|.. ..+++|
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc
Confidence 555555555555555555544333 444455555555555554444444444444444444444444444432 334444
Q ss_pred CEEEcCCCc
Q 003465 344 ERVDMSSNK 352 (818)
Q Consensus 344 ~~L~Ls~n~ 352 (818)
+.+++++|+
T Consensus 294 ~~l~l~~N~ 302 (313)
T 1ogq_A 294 DVSAYANNK 302 (313)
T ss_dssp CGGGTCSSS
T ss_pred ChHHhcCCC
Confidence 444444443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9e-36 Score=337.51 Aligned_cols=301 Identities=22% Similarity=0.229 Sum_probs=159.3
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35677777777776666666677777777777777766666666666777777777776666544445666666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66666655555666666666666666666655555566666666666666655544444455555555555555555544
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
.+..+..+++|++|++++|...+.+|.......+|+.|++++|.+.+..+..+..++
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~----------------------- 248 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV----------------------- 248 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-----------------------
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-----------------------
Confidence 444444445555555554444433333333333444444444444432223333344
Q ss_pred CCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 003465 341 ENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLIL 420 (818)
Q Consensus 341 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 420 (818)
+|+.|++++|.+.+..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++
T Consensus 249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 249 -YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp -TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred -ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 4444444444443333333344444444444444444333344444444444444444444333333344444444444
Q ss_pred ccCcC
Q 003465 421 SNNSL 425 (818)
Q Consensus 421 s~N~l 425 (818)
++|++
T Consensus 328 ~~N~l 332 (477)
T 2id5_A 328 DSNPL 332 (477)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 44443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=336.82 Aligned_cols=324 Identities=22% Similarity=0.216 Sum_probs=237.6
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46677766665 4555443 47778888888777766777777777888888777777666777777777777777777
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77755555567777777777777777766666666777777777777666655555666666666666666665544444
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENL 343 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 343 (818)
.+..+++|+.|++++|.+. +..+..+..+++|+.|++++|.+.+.+|.......+|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNIN------------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHTTCTTCCEEEEESCCCC------------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred HhcccCCCcEEeCCCCcCc------------------------EeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 4445555555555555444 4444445555555556665555555555555555688
Q ss_pred CEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccC
Q 003465 344 ERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNN 423 (818)
Q Consensus 344 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 423 (818)
+.|++++|.+....+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 88888888888655567889999999999999999888888999999999999999999988999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 424 SLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 424 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
.+++..+..+..+++|+.|++++|++....+
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9997777788999999999999999986544
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=317.46 Aligned_cols=312 Identities=19% Similarity=0.182 Sum_probs=212.9
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++++++|+++++.+....+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46788999999988886655667889999999999999987777788999999999999999988778888889999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.++...+..+.++++|++|++++|.+++..+..+.++++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999988855545568888889999888888877777788888888888888887753 3455677777777777665
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+ +...++|++|++++|.++.. |. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 2 33345667777777766633 22 1235566666666655532 3444555555555555555544444444
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|+.|
T Consensus 270 ------------------------~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 270 ------------------------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp ------------------------TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ------------------------ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 44455555555554443 2333445556666666666665 344445556666666
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCcc
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
++++|+++.. + +..+++|+.|++++|++...
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 6666666532 2 45566777777777776654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-34 Score=334.28 Aligned_cols=313 Identities=20% Similarity=0.198 Sum_probs=221.5
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++++.|++++|.+....+..|+++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999988887666678889999999999999988777788999999999999999988777788889999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999988866555678888888888888888887777888888888888888887753 2455667777777777665
Q ss_pred CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+ +....+|++|++++|.++...+ .+ .++|+.|++++|.+.+. . .+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~------------------------~l~ 251 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--A------------------------WLL 251 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--G------------------------GGG
T ss_pred c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--h------------------------hhc
Confidence 3 3344566666666666653221 11 23455555555555431 3 344
Q ss_pred CCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 003465 339 NLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 339 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
.+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 45555555555555555555555555555556665555554 3444555667777777777776 456666677777778
Q ss_pred ecccCcCcccCCccccCCCCCCEEECcCCcCCccC
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMT 453 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 453 (818)
+|++|.+++. + +..+++|+.|++++|++.+..
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 8887777643 2 556778888888888887653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-33 Score=310.09 Aligned_cols=332 Identities=21% Similarity=0.172 Sum_probs=217.9
Q ss_pred CCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 148 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+.+|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57889999999988854444578888999999999988876667788888888888888888877777778888888888
Q ss_pred ccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC
Q 003465 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307 (818)
Q Consensus 228 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 307 (818)
+++|+++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 888877755444566777777777777777665555566666666666666666532 12334455555555554431
Q ss_pred CCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCC
Q 003465 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387 (818)
Q Consensus 308 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 387 (818)
+. ..++|+.|++++|.+... +. ...++|+.|++++|.+++. ..+..
T Consensus 201 -----~~------------------------~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 201 -----LA------------------------IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp -----EE------------------------CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred -----cC------------------------CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcC
Confidence 12 223455555555554432 11 1234566666666666543 34566
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccc
Q 003465 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDR 467 (818)
Q Consensus 388 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 467 (818)
+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|++++. |
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~------------- 311 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E------------- 311 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G-------------
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-C-------------
Confidence 6667777777777766666666667777777777777663 344455666677777666665532 1
Q ss_pred cccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 468 LLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 468 ~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
..++.+++|+.|++++|+++.. | +..+++|++|++++|++.+.-..
T Consensus 312 -------------------------------~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 312 -------------------------------RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp -------------------------------GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred -------------------------------ccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence 2345566777777777777654 2 56677888888888888775444
Q ss_pred ccccCCCCCcccCcCCCC
Q 003465 548 FINRIMPADLVPMINFSI 565 (818)
Q Consensus 548 ~~~~~~~~~~~~~n~~~~ 565 (818)
..+.......+.++...|
T Consensus 358 ~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 358 ALFRNVARPAVDDADQHC 375 (390)
T ss_dssp HHTTTCCTTTBCCCCSCC
T ss_pred HHHHHHHhhcccccCcee
Confidence 445555555566676666
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.6e-33 Score=301.58 Aligned_cols=307 Identities=29% Similarity=0.409 Sum_probs=171.7
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3445555555555555543 22 255555555555555555532 22 5555555555555555542 22 355555555
Q ss_pred EEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
+|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-------------------------~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-------------------------PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-------------------------GGTTCTTCCEEECCSSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-------------------------chhhCCCCcEEEecCCC
Confidence 55555555543221 4444555555555443332222 24444444445554444
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLG 336 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 336 (818)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 443221 4445555555555555553222 4555666666666666554332 5556666666666666654332
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 416 (818)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 55666666677666666542 3466667777777777776653 3466677777777777777766667777777777
Q ss_pred EEecccCcCcccCCccccCCCCCCEEECcCCcCC
Q 003465 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 417 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 450 (818)
.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777775544 667777777777777764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=326.65 Aligned_cols=332 Identities=21% Similarity=0.168 Sum_probs=223.8
Q ss_pred CCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 148 LNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 148 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+.+++.|++++|.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788999999988865555678888899999998888877777888888888888888888877777778888888888
Q ss_pred ccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCC
Q 003465 228 LSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFG 307 (818)
Q Consensus 228 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 307 (818)
+++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 8888777655555677777777777777776666666666666666666666665431 2334455555555554432
Q ss_pred CCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCC
Q 003465 308 PIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGH 387 (818)
Q Consensus 308 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 387 (818)
+... ++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+..
T Consensus 207 -----l~~~------------------------~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 207 -----LAIP------------------------IAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -----EECC------------------------TTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGG
T ss_pred -----ccCC------------------------chhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhcc
Confidence 1222 3455555555554422111 124566666666666542 45566
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccc
Q 003465 388 LTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDR 467 (818)
Q Consensus 388 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 467 (818)
+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i--------------- 316 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV--------------- 316 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC---------------
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc---------------
Confidence 6677777777777766666666677777777777777664 444555566666666666665422
Q ss_pred cccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc
Q 003465 468 LLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 547 (818)
Q Consensus 468 ~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 547 (818)
|..++.+++|+.|+|++|++++.. ++.+++|++|++++|++++..+.
T Consensus 317 ------------------------------~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 317 ------------------------------ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp ------------------------------GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred ------------------------------CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence 224556777888888888887652 66778888999999998887655
Q ss_pred ccccCCCCCcccCcCCCC
Q 003465 548 FINRIMPADLVPMINFSI 565 (818)
Q Consensus 548 ~~~~~~~~~~~~~n~~~~ 565 (818)
..+..+....+.++...|
T Consensus 364 ~~~~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHC 381 (597)
T ss_dssp HHTTTCCTTTBCCCCCCC
T ss_pred HHHHHHhhhccccccccC
Confidence 556666666777888888
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.3e-33 Score=299.97 Aligned_cols=302 Identities=27% Similarity=0.379 Sum_probs=207.3
Q ss_pred CEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEE
Q 003465 76 SIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELY 155 (818)
Q Consensus 76 ~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 155 (818)
.++.+++.+. .+..++ .+..+++|++|++++|.+.+..+ +..+++|++|+|++|.+++ ++ .+.++++|++|+
T Consensus 45 ~L~~L~l~~~--~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 45 SITKLVVAGE--KVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp TCSEEECCSS--CCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred cccEEEEeCC--ccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 4666776432 122223 27889999999999999986443 9999999999999999985 44 699999999999
Q ss_pred CcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC
Q 003465 156 LSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG 235 (818)
Q Consensus 156 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 235 (818)
+++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999854 44 8999999999999997665554 48999999999999999886543 7788889999998888875
Q ss_pred CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcC
Q 003465 236 PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH 315 (818)
Q Consensus 236 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 315 (818)
..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 433 6677777777777777765432 5566667777777766664322 55566666666666655532 23444
Q ss_pred CCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEE
Q 003465 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLN 395 (818)
Q Consensus 316 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 395 (818)
+++|+.|++++|+++ +. ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~------------------------~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 264 LTKLKMLNVGSNQIS------------------------DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCC------------------------CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCcCEEEccCCccC------------------------CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 455555555555444 32 2344555555555655555555555555666666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEecccCcCc
Q 003465 396 LNSNKLNGSIPSELMNCFSLQSLILSNNSLT 426 (818)
Q Consensus 396 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 426 (818)
+++|++++..| +..+++|+.|++++|.++
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666654444 555666666666666654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=5.4e-31 Score=283.02 Aligned_cols=295 Identities=22% Similarity=0.286 Sum_probs=158.5
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++++++++.+. .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4455555555544 2343332 456666666666665555556666666666666666665556666666666666666
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC--CCCCCCCCCCcceEEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG--PIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66665 3343332 566666666666665555556666666666666666542 344455555666666666665553
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (818)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333222 45555555555555554555555555555555555555444444555555555555555554 44444555
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG--SIPSELMNCFSLQS 417 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~ 417 (818)
+++|+.|++++|++++..+..+.... .....+.|+.|++++|.+.. ..|..|..+.+++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeE
Confidence 55555555555555443333332110 00112456666666666542 34455666666666
Q ss_pred EecccCc
Q 003465 418 LILSNNS 424 (818)
Q Consensus 418 L~Ls~N~ 424 (818)
++|++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 6666663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4e-31 Score=284.24 Aligned_cols=294 Identities=23% Similarity=0.311 Sum_probs=164.9
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+++.++++++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655 4454442 567777777777765556667777777777777777766666667777777777777
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCC--CCCCCCCCCCcceEEEccCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNG--PIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+|.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77666 3444333 566677777666665555556666666666666666642 444455555 56666666666553
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGN 339 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (818)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333322 45555555555555544455555555555555555555544445555555555555555554 44444555
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc--ccCCccccCCCCCCE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN--GSIPSELMNCFSLQS 417 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 417 (818)
+++|+.|++++|++++..+..+.... .....++|+.|++++|.+. +..|..+..+++|+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred CccCCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccccchhhh
Confidence 55555555555555443333332210 0001245566666666655 444555666666666
Q ss_pred EecccCc
Q 003465 418 LILSNNS 424 (818)
Q Consensus 418 L~Ls~N~ 424 (818)
|++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 6666653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.7e-31 Score=283.71 Aligned_cols=289 Identities=21% Similarity=0.277 Sum_probs=179.3
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36777888877776 5565553 56777777777777655666777777777777777777666666777777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC--CCCccccCCCCCcEEEccccccC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG--PLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++|.++ .+|..+. ++|++|++++|++....+..+..+++|+.|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777766 3343333 566666666666655444445555566666666555532 333344444 4555555555444
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+ +|..+ . ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 186 ~-l~~~~------------------------~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDL------------------------P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-CCSSS------------------------C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-cCccc------------------------c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2 22222 1 4555555555555554445555555566666666655555555555
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC------CCCCCEEecccCcCc--ccCCcccc
Q 003465 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN------CFSLQSLILSNNSLT--GRIPSEIR 434 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~ 434 (818)
.+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+.. ..+|+.|++++|++. +..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 6666666666666665 45555666666666777766666554444433 467999999999987 56778899
Q ss_pred CCCCCCEEECcCCc
Q 003465 435 NLSYLHELDLSLNF 448 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~ 448 (818)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999999985
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3.7e-32 Score=289.21 Aligned_cols=250 Identities=30% Similarity=0.461 Sum_probs=128.9
Q ss_pred CCcEEEccccccCC--cCCcccCCCCCCCEEEccC-CcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEE
Q 003465 270 NLVYLSLNVNNLTG--PIPSTLGRLTSLSDLDLSH-NSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERV 346 (818)
Q Consensus 270 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 346 (818)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 3444444444444444442 44444444444455555555555555544445455555555555
Q ss_pred EcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCC-CCCEEEccCCcCcccCCccccCCCCCCEEecccCcC
Q 003465 347 DMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT-LLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSL 425 (818)
Q Consensus 347 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 425 (818)
++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555555555555555555555555555555555555554 556666666665555555555554 66666666666
Q ss_pred cccCCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCc
Q 003465 426 TGRIPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCS 505 (818)
Q Consensus 426 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~ 505 (818)
++..|..+..+++|+.|++++|.+++..|. +..++
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------------------------~~~l~ 244 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------------------------------VGLSK 244 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------------------------------CCCCT
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------------------------------ccccC
Confidence 655555566666666666666655543321 22334
Q ss_pred CCCEEECCCCcCccCCcccccCCCCCCeeeCcCCCCcccCCc-ccccCCCCCcccCcCCCC
Q 003465 506 GLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE-FINRIMPADLVPMINFSI 565 (818)
Q Consensus 506 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~-~~~~~~~~~~~~~n~~~~ 565 (818)
+|+.|++++|++++.+|..++.+++|++|++++|+++|.+|. .....+....+.+|+.+|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 445555555555555555555555555555555555555554 333344444445555555
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-30 Score=280.62 Aligned_cols=290 Identities=21% Similarity=0.269 Sum_probs=184.4
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36788888888877 4565543 57788888888887666667777888888888888777766777777777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC--CCCccccCCCCCcEEEccccccC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG--PLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777776 3444333 566666666666665544455556666666666665542 33444444555555555555544
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
. +|..+ . ++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 185 ~-l~~~~------------------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 T-IPQGL------------------------P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp S-CCSSC------------------------C--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred c-CCccc------------------------c--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 2 22222 1 4555555555555554455555556666666666666555555556
Q ss_pred CCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccC------CCCCCEEecccCcCcc--cCCcccc
Q 003465 363 DLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMN------CFSLQSLILSNNSLTG--RIPSEIR 434 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~ 434 (818)
.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 6666666666666665 45555666666666666666666554444432 4789999999999864 5567888
Q ss_pred CCCCCCEEECcCCc
Q 003465 435 NLSYLHELDLSLNF 448 (818)
Q Consensus 435 ~l~~L~~L~Ls~N~ 448 (818)
.++.++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 89999999999985
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5e-35 Score=330.12 Aligned_cols=350 Identities=21% Similarity=0.210 Sum_probs=177.4
Q ss_pred CCCcEEEcCCCCCcccCCc-cccCCCcCceecccCccccc----CCCCCCCCCCCCcEEECcCCCCCCCCcccc-CCCC-
Q 003465 101 PNLESFRIWYSNISGNIPS-EIGALSKLQILDLSHNNLTG----TIPSKLGNLNNLVELYLSRSNLNGPIPSTL-GHLT- 173 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~- 173 (818)
++|++|+|++|.++..... .+..+++|++|+|++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577888888877654333 36777888888888887764 245556677788888888877764333222 2333
Q ss_pred ---CCCEEEccCCCCCC----CCccCCCCCCCCcEEEcccCcCCccCCccc-----cCCCCCCEEEccCCcCCCCC----
Q 003465 174 ---RLSILDLSSNSLVG----PIPFTLGHLTQLTTLKLFSNQINGCIPLDF-----GNLRHLKEVDLSGNKLNGPI---- 237 (818)
Q Consensus 174 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~---- 237 (818)
+|++|+|++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 346667777777777777777654322222 22445666666666665422
Q ss_pred CCCCCCCCcceEEEccCCCCCCCCCcccc-----CCCCCcEEEccccccCCc----CCcccCCCCCCCEEEccCCcCCCC
Q 003465 238 ASTIGDLTNLNSLDLSSKQLSGPLPQEIG-----YLENLVYLSLNVNNLTGP----IPSTLGRLTSLSDLDLSHNSLFGP 308 (818)
Q Consensus 238 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ 308 (818)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33344455666666666655432222221 134555555555555532 233444455555555555554322
Q ss_pred C-----chhhcCCCCCCeeeccCCcCCCC----cCccccCCCCCCEEEcCCCcccccCCcCcC-----CCCCCCEEeccC
Q 003465 309 I-----PPTLSHLTRLTTLKLFSNQINGS----IPLGIGNLENLERVDMSSNKLEGPIPLTIG-----DLTNLIYLDLSL 374 (818)
Q Consensus 309 ~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~ 374 (818)
. +..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 11112345555555555554432 333344445555555555544322221111 113444444444
Q ss_pred CcCCCC----CCcccCCCCCCCEEEccCCcCcccCCccccC-----CCCCCEEecccCcCcc----cCCccccCCCCCCE
Q 003465 375 NQLSGP----IPSTFGHLTLLKFLNLNSNKLNGSIPSELMN-----CFSLQSLILSNNSLTG----RIPSEIRNLSYLHE 441 (818)
Q Consensus 375 n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~ 441 (818)
|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 444432 2223333444444444444444322222211 3344444444444443 33333444444444
Q ss_pred EECcCCcCC
Q 003465 442 LDLSLNFIS 450 (818)
Q Consensus 442 L~Ls~N~l~ 450 (818)
|++++|+++
T Consensus 403 L~l~~N~i~ 411 (461)
T 1z7x_W 403 LDLSNNCLG 411 (461)
T ss_dssp EECCSSSCC
T ss_pred EECCCCCCC
Confidence 444444443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2e-34 Score=325.24 Aligned_cols=388 Identities=21% Similarity=0.159 Sum_probs=199.4
Q ss_pred CcCceecccCcccccCCCCC-CCCCCCCcEEECcCCCCCC----CCccccCCCCCCCEEEccCCCCCCCCccCC-CCCC-
Q 003465 125 SKLQILDLSHNNLTGTIPSK-LGNLNNLVELYLSRSNLNG----PIPSTLGHLTRLSILDLSSNSLVGPIPFTL-GHLT- 197 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 197 (818)
++|++|+|++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888776443222 5667788888888887763 235566677778888888777664322222 1233
Q ss_pred ---CCcEEEcccCcCCc----cCCccccCCCCCCEEEccCCcCCCCCCCC-----CCCCCcceEEEccCCCCCCCC----
Q 003465 198 ---QLTTLKLFSNQING----CIPLDFGNLRHLKEVDLSGNKLNGPIAST-----IGDLTNLNSLDLSSKQLSGPL---- 261 (818)
Q Consensus 198 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~---- 261 (818)
+|++|++++|.++. .++..+.++++|++|++++|.+++..+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777663 34556666667777777766654322211 112344555555555554321
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhh-cCCCCCCeeeccCCcCCCC----cCcc
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGS----IPLG 336 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~----~~~~ 336 (818)
+..+..+++|++|++++|.+++..+..+.. .+ ...++|++|++++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 222333444555555544443322211111 00 0133455555555544432 2333
Q ss_pred ccCCCCCCEEEcCCCcccccC-----CcCcCCCCCCCEEeccCCcCCCC----CCcccCCCCCCCEEEccCCcCcccCCc
Q 003465 337 IGNLENLERVDMSSNKLEGPI-----PLTIGDLTNLIYLDLSLNQLSGP----IPSTFGHLTLLKFLNLNSNKLNGSIPS 407 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~ 407 (818)
+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 444455555555555544321 11122345555666665555532 344444556666666666665433222
Q ss_pred ccc-----CCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCc
Q 003465 408 ELM-----NCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNR 478 (818)
Q Consensus 408 ~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~ 478 (818)
.+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+...... ....|+.|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-PGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-CCCceEEEECCCCC
Confidence 221 124666666666666543 34445556666666666666655443333221000 01155666666665
Q ss_pred CcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCccccc-----CCCCCCeeeCcCCCCcc
Q 003465 479 LSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMG-----KIIFLEYLDLSYNNIPG 543 (818)
Q Consensus 479 l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g 543 (818)
+++... ..+|..+..+++|+.||+++|++++.....+. ....|+.|++.++.+..
T Consensus 382 i~~~~~----------~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 382 VSDSSC----------SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHH----------HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CChhhH----------HHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 553100 02233566677777777777777654222221 12345666665555543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.3e-31 Score=280.85 Aligned_cols=282 Identities=21% Similarity=0.241 Sum_probs=180.7
Q ss_pred CCCHHHHHHHHcCCC-------CCCCCCC--CCCCCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcE
Q 003465 35 VPIRLEREALLNTGW-------WNNSREK--ASNHSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLES 105 (818)
Q Consensus 35 ~~~~~~~~~ll~~~~-------~~~~~~~--~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~ 105 (818)
.++..|++||+.++. ....+|. .....++|.|.|+.|+.... .+ .....+++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~-----------~l------~~~~~~~l~~ 85 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD-----------LL------EDATQPGRVA 85 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH-----------HH------HHHTSTTCCE
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH-----------HH------hcccccceeE
Confidence 456679999987542 1124552 01356889999999952110 00 0123467889
Q ss_pred EEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCC
Q 003465 106 FRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSL 185 (818)
Q Consensus 106 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 185 (818)
|+|++|.+. .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|.+
T Consensus 86 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred EEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 999999988 77888888999999999999998 78888999999999999999998 7788899999999999999888
Q ss_pred CCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccc
Q 003465 186 VGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEI 265 (818)
Q Consensus 186 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 265 (818)
.+.+|..+... ..+..|.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+
T Consensus 163 ~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 163 LTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp CCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred ccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 88888766540 01112333444444444444444 334444444455555555555442 33345
Q ss_pred cCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCE
Q 003465 266 GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLER 345 (818)
Q Consensus 266 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 345 (818)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 55555555555555555555555555555555555555555555555555666666666666655566666666666666
Q ss_pred EEcCCCcc
Q 003465 346 VDMSSNKL 353 (818)
Q Consensus 346 L~Ls~n~l 353 (818)
+++..+.+
T Consensus 306 l~l~~~~~ 313 (328)
T 4fcg_A 306 ILVPPHLQ 313 (328)
T ss_dssp EECCGGGS
T ss_pred EeCCHHHH
Confidence 66554443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=268.75 Aligned_cols=286 Identities=20% Similarity=0.198 Sum_probs=195.7
Q ss_pred CCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCccccc
Q 003465 60 HSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG 139 (818)
Q Consensus 60 ~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 139 (818)
...+|.|.|+ |+..+ ..+..+|.. + .++|++|++++|.+++..+..|.++++|++|+|++|.+++
T Consensus 26 ~~~~C~~~~~-c~~~~-----------~~l~~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSS-----------GSLNSIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp -CCEECTTSE-EECCS-----------TTCSSCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCCCeE-eeCCC-----------CCccccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 4567999988 75322 112222332 2 2589999999999988777789999999999999999998
Q ss_pred CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccC-cCCccCCccc
Q 003465 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSN-QINGCIPLDF 217 (818)
Q Consensus 140 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~l 217 (818)
..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+ ..+..+++|++|++++| .+....+..|
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 778889999999999999999986555568889999999999998885433 36888899999999888 4666667778
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccC---CCCC
Q 003465 218 GNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLG---RLTS 294 (818)
Q Consensus 218 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~ 294 (818)
.++++|++|++++|++++..+..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ..+.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence 8888888888888888877788888888888888888887643323334577788888888877754433222 2334
Q ss_pred CCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccC
Q 003465 295 LSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL 374 (818)
Q Consensus 295 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 374 (818)
++.++++++.+.+. .+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++
T Consensus 251 l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 251 IKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 44444444444321 000 2344455555555666665555532222235556666666666
Q ss_pred CcCCCC
Q 003465 375 NQLSGP 380 (818)
Q Consensus 375 n~l~~~ 380 (818)
|.+.+.
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 655543
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-31 Score=311.16 Aligned_cols=404 Identities=15% Similarity=0.104 Sum_probs=242.9
Q ss_pred cCCCCCCcEEEcCCCCC---cccCCcccc------------CCCcCceecccCcccccCCCCCCCCC--CCCcEEECcCC
Q 003465 97 FSCFPNLESFRIWYSNI---SGNIPSEIG------------ALSKLQILDLSHNNLTGTIPSKLGNL--NNLVELYLSRS 159 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~---~~~~~~~~~------------~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n 159 (818)
+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 56788899999977542 133343333 67888888888888776555555543 34888888887
Q ss_pred C-CCC-CCccccCCCCCCCEEEccCCCCCCC----CccCCCCCCCCcEEEcccCcCCc----cCCccccCCCCCCEEEcc
Q 003465 160 N-LNG-PIPSTLGHLTRLSILDLSSNSLVGP----IPFTLGHLTQLTTLKLFSNQING----CIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 160 ~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~ 229 (818)
. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 211 1122234678888888888877654 33344567888888888888762 334445677888888888
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCC---CCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLS---GPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+.
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence 887764 5566777788888888753322 233345666777788777765333 45666667777888888777754
Q ss_pred CCCc-hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCC-----------CcccccCC-cCcCCCCCCCEEecc
Q 003465 307 GPIP-PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSS-----------NKLEGPIP-LTIGDLTNLIYLDLS 373 (818)
Q Consensus 307 ~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~~-~~l~~l~~L~~L~Ls 373 (818)
+... ..+..+++|+.|+++++...+.++.....+++|++|++++ |.+++... .....+++|++|+++
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 3322 3356677777777773322222333345567777777773 44442211 112346677777777
Q ss_pred CCcCCCCCCcccCC-CCCCCEEEcc----CCcCccc-----CCccccCCCCCCEEecccCc--CcccCCccc-cCCCCCC
Q 003465 374 LNQLSGPIPSTFGH-LTLLKFLNLN----SNKLNGS-----IPSELMNCFSLQSLILSNNS--LTGRIPSEI-RNLSYLH 440 (818)
Q Consensus 374 ~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l-~~l~~L~ 440 (818)
.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+ ..+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 67766554444443 6677777775 4555542 22334556777777776443 444433333 2366677
Q ss_pred EEECcCCcCCccCChhh-hcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCcc
Q 003465 441 ELDLSLNFISGMTPPQH-FKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDG 519 (818)
Q Consensus 441 ~L~Ls~N~l~~~~p~~~-~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~ 519 (818)
.|++++|.+++.....+ ..+. +|+.|++++|.+++... +..+..+++|+.|++++|++++
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~-------------~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCP------NLQKLEMRGCCFSERAI-------------AAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCT------TCCEEEEESCCCBHHHH-------------HHHHHHCSSCCEEEEESCBCCT
T ss_pred EeeccCCCCCHHHHHHHHhcCc------ccCeeeccCCCCcHHHH-------------HHHHHhcCccCeeECcCCcCCH
Confidence 77777776665322222 2222 56666666666543311 1133455666666666666665
Q ss_pred CC
Q 003465 520 TI 521 (818)
Q Consensus 520 ~~ 521 (818)
..
T Consensus 528 ~~ 529 (592)
T 3ogk_B 528 TG 529 (592)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.7e-29 Score=262.82 Aligned_cols=250 Identities=23% Similarity=0.230 Sum_probs=142.9
Q ss_pred CCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccC--C
Q 003465 64 CKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGT--I 141 (818)
Q Consensus 64 c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~ 141 (818)
|.|.++.|+..+ +..++.. + .++|++|+|++|.+....+..|.++++|++|+|++|.++.. .
T Consensus 7 C~~~~l~c~~~~-------------l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 7 CSGTEIRCNSKG-------------LTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EETTEEECCSSC-------------CSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eCCCEEEcCCCC-------------cccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 789999996432 1111221 1 24677777777777744444567777777777777776632 2
Q ss_pred CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcEEEcccCcCCccCCccccCC
Q 003465 142 PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220 (818)
Q Consensus 142 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 220 (818)
|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 444556677777777777766 455556667777777777776665433 356666666666666666665555556666
Q ss_pred CCCCEEEccCCcCCC-CCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEE
Q 003465 221 RHLKEVDLSGNKLNG-PIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLD 299 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 299 (818)
++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 666666666666554 3445555555555555555555544444455555555555555555444333444444444444
Q ss_pred ccCCcCCCCCchhhcCCC-CCCeeeccCCcCC
Q 003465 300 LSHNSLFGPIPPTLSHLT-RLTTLKLFSNQIN 330 (818)
Q Consensus 300 Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 330 (818)
+++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 444444444444444432 4444444444443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=265.56 Aligned_cols=276 Identities=21% Similarity=0.221 Sum_probs=138.9
Q ss_pred CCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEE
Q 003465 100 FPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 100 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 179 (818)
++.....+++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344455666666666 3444443 3666777777766654444666666666666666666655555666666666666
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCc-CCCCCCCCCCCCCcceEEEccCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNK-LNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
+++|.+++..+..+.++++|++|++++|+++...+ ..+.++++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666664444345666666666666666653322 245555566666665552 3333334444455555555555544
Q ss_pred CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccc
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGI 337 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 337 (818)
++ ..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+
T Consensus 187 ~~------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 187 QS------------------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CE------------------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred Cc------------------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 44 444444445555555555555432222223334555555555555543322211
Q ss_pred ---cCCCCCCEEEcCCCcccc----cCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc
Q 003465 338 ---GNLENLERVDMSSNKLEG----PIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN 402 (818)
Q Consensus 338 ---~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 402 (818)
...+.++.++++++.+.+ .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|++.
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 123344555555554432 12333344444444444444444222222334444444444444443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.7e-28 Score=257.94 Aligned_cols=227 Identities=24% Similarity=0.253 Sum_probs=103.8
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCC--CccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEE
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGP--IPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVD 227 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 227 (818)
+|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 444444444444422222344444444444444444321 12333344555555555555442 333445555555555
Q ss_pred ccCCcCCCCCC-CCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC-cCCcccCCCCCCCEEEccCCcC
Q 003465 228 LSGNKLNGPIA-STIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG-PIPSTLGRLTSLSDLDLSHNSL 305 (818)
Q Consensus 228 l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l 305 (818)
+++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555543332 344455555555555555554444445555555555555555543 3444445555555555555555
Q ss_pred CCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCC-CCCEEeccCCcC
Q 003465 306 FGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT-NLIYLDLSLNQL 377 (818)
Q Consensus 306 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l 377 (818)
.+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+..+..++ +|++|++++|.+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 444444444444444444444444433333333444444444444444433333333332 333333333333
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-27 Score=254.85 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=209.2
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
..+++++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 67888888999999999999998 78888889999999999999888 678888888888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|++.+.+|..+... .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 888888777777655431 12344677899999999999999 78889999999999999999999
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5 666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeccCCcCC
Q 003465 363 DLTNLIYLDLSLNQLS 378 (818)
Q Consensus 363 ~l~~L~~L~Ls~n~l~ 378 (818)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999999987665
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.9e-31 Score=308.20 Aligned_cols=406 Identities=14% Similarity=0.079 Sum_probs=303.7
Q ss_pred CccccCCCcCceecccCccc---ccCCCCCCC------------CCCCCcEEECcCCCCCCCCccccCCC--CCCCEEEc
Q 003465 118 PSEIGALSKLQILDLSHNNL---TGTIPSKLG------------NLNNLVELYLSRSNLNGPIPSTLGHL--TRLSILDL 180 (818)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L 180 (818)
+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34567889999999988643 134554444 78999999999998886666666553 45999999
Q ss_pred cCCCC-CC-CCccCCCCCCCCcEEEcccCcCCcc----CCccccCCCCCCEEEccCCcCCCC----CCCCCCCCCcceEE
Q 003465 181 SSNSL-VG-PIPFTLGHLTQLTTLKLFSNQINGC----IPLDFGNLRHLKEVDLSGNKLNGP----IASTIGDLTNLNSL 250 (818)
Q Consensus 181 ~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 250 (818)
++|.. +. .++....++++|++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+.++++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 99862 11 1222234789999999999988755 333456789999999999998732 33345678999999
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccccccC---CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCC
Q 003465 251 DLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT---GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327 (818)
Q Consensus 251 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 327 (818)
++++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 999999885 6678888999999999864333 23445678889999999998643 467778888999999999999
Q ss_pred cCCCCcC-ccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccC-----------CcCCCC-CCcccCCCCCCCEE
Q 003465 328 QINGSIP-LGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSL-----------NQLSGP-IPSTFGHLTLLKFL 394 (818)
Q Consensus 328 ~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~L 394 (818)
.+++... ..+..+++|+.|+++++-..+.++.....+++|++|++++ |.+++. ++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 9765433 3468899999999994332223333446788999999993 566543 22234568999999
Q ss_pred EccCCcCcccCCccccC-CCCCCEEecc----cCcCccc-----CCccccCCCCCCEEECcCCc--CCccCChhhhc-Cc
Q 003465 395 NLNSNKLNGSIPSELMN-CFSLQSLILS----NNSLTGR-----IPSEIRNLSYLHELDLSLNF--ISGMTPPQHFK-QK 461 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~~-~~ 461 (818)
+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+..+.. +.
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 99999998877666665 8999999997 6677753 33346779999999998654 66655544443 33
Q ss_pred cccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccC-CcccccCCCCCCeeeCcCCC
Q 003465 462 HSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGT-IPLEMGKIIFLEYLDLSYNN 540 (818)
Q Consensus 462 ~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~ 540 (818)
+|+.|++++|.+++.. ++..+..+++|+.|++++|.+++. ++.....+++|++|++++|+
T Consensus 464 ------~L~~L~L~~n~l~~~~-------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 464 ------NVRWMLLGYVGESDEG-------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp ------TCCEEEECSCCSSHHH-------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ------cceEeeccCCCCCHHH-------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 7999999999987532 223567789999999999999866 44455789999999999999
Q ss_pred Cccc
Q 003465 541 IPGT 544 (818)
Q Consensus 541 l~g~ 544 (818)
+++.
T Consensus 525 it~~ 528 (592)
T 3ogk_B 525 ASMT 528 (592)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 8764
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-27 Score=249.08 Aligned_cols=206 Identities=26% Similarity=0.214 Sum_probs=106.1
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCCCCCCEEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 179 (818)
++|++|++++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455566666555555555555555555555555555555445555555555555555554 4443345555555555555
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
+++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------------ 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------------------------
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------------------------
Confidence 55555554444445555555555555555544433344444444444444444443
Q ss_pred CCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 260 PLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 260 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 33333444444444445444444444444555555555555555555444444555555555555555544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-26 Score=258.82 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=59.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35566666666666555555666666666666666665555555555666666666666555444444555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
++|.++...+..+.++++|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCC
Confidence 55555544334455555555555554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.6e-26 Score=256.67 Aligned_cols=227 Identities=22% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555555555555555555555555555444445555555555555555555433334555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
++|.++...+..|.++++|++|++++|. .+....+..|.++++|++|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELK-----------------------RLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCC-----------------------CcceeCcchhhcccccCeecCCCCcCcc-
Confidence 5555544333344444444444444422 1221122234444444444444444431
Q ss_pred CCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
+| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 12 13334444444444444443334444444444444444444443333333334444444444444433333333333
Q ss_pred CCCCEEEcCCCc
Q 003465 341 ENLERVDMSSNK 352 (818)
Q Consensus 341 ~~L~~L~Ls~n~ 352 (818)
++|+.|++++|.
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 344444444433
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.3e-27 Score=245.21 Aligned_cols=254 Identities=25% Similarity=0.246 Sum_probs=130.3
Q ss_pred cEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 003465 152 VELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 152 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 231 (818)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555554 334322 245555555555555444444555555555555555555444444555555555555544
Q ss_pred c-CCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCc
Q 003465 232 K-LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIP 310 (818)
Q Consensus 232 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 310 (818)
. +.... +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVD------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCC------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccC------------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 3 33333 3344444444444444444444444444555555555555555554444
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCC
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTL 390 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 390 (818)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555555555555555555433344555666666666666666555556666666666666666666555455666666
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 391 LKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 391 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
|+.|++++|.+....+.. .-...++.+..+.+.+....|..+
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 666666666655332211 001123333344555555555544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.4e-26 Score=255.00 Aligned_cols=247 Identities=23% Similarity=0.260 Sum_probs=124.9
Q ss_pred CceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 127 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666 4554443 4666666666666655566666666666666666666655555566666666666666
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP 286 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (818)
|+++...+..|.++++|++|++++|+++...+..+..+++|+.|++++|. .+....+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i~~ 189 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------KLEYISE 189 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEECT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------CccccCh
Confidence 66655444445555555555555555554433444444444444444422 1221112
Q ss_pred cccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCC
Q 003465 287 STLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTN 366 (818)
Q Consensus 287 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 366 (818)
..+..+++|+.|++++|.+.+. | .+..+++|+.|+|++|++.+..|..+..+++|+.|++++|++.+..+..+..+++
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 2344444555555555544422 1 2334444444444444444444444444444444444444444444444444444
Q ss_pred CCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcC
Q 003465 367 LIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKL 401 (818)
Q Consensus 367 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 401 (818)
|+.|+|++|++++..+..+..+++|+.|+|++|.+
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 44444444444443333344444444444444433
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.4e-26 Score=252.10 Aligned_cols=245 Identities=23% Similarity=0.263 Sum_probs=105.9
Q ss_pred CceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 127 LQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 127 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
.+.++.+++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344555555554 3444332 3455555555555544444444555555555555544443334444444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc-cCCcC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN-LTGPI 285 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 285 (818)
|+++...+ ..+..+++|++|++++|.++...+..+..+++|++|++++|+ +....
T Consensus 122 n~l~~~~~------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPN------------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCT------------------------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCH------------------------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 44443333 334444444444444444443333334444444444444422 22122
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCC
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLT 365 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 365 (818)
+..|..+++|++|++++|.+.. +| .+..+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..+..+..++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 2234444555555555554442 12 233344444444444444433344444444444444444444443344444444
Q ss_pred CCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCc
Q 003465 366 NLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK 400 (818)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 400 (818)
+|+.|+|++|++++..+..|..+++|+.|+|++|.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 44444444444443333333334444444444443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.5e-25 Score=253.02 Aligned_cols=265 Identities=28% Similarity=0.348 Sum_probs=137.7
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
++++|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777766 5555544 56777777777666 3443 3556666666666665 3443 45566666666
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|.+++ +|. .+++|++|++++|+++. +|.. + ++|++|++++|.+++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l------------------------~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---P------------------------PGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---C------------------------TTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---C------------------------CCCCEEECcCCcCCC-c
Confidence 665553 222 33445555555554442 2221 1 344444444444442 1
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
|. .+++|+.|++++|.++. +| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++. +|
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~------- 217 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LP------- 217 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CC-------
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cC-------
Confidence 21 12344444555544442 22 223445555555554442 111 12344444444444431 22
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILS 421 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 421 (818)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|+
T Consensus 218 -----------------~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 218 -----------------A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp -----------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred -----------------C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 1 12445555555555553 22 23455666666666665 3443 45667777777
Q ss_pred cCcCcccCCccccCCCCCCEEECcCCcCCccCChhhh
Q 003465 422 NNSLTGRIPSEIRNLSYLHELDLSLNFISGMTPPQHF 458 (818)
Q Consensus 422 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 458 (818)
+|.++ .+|..+.++++|+.|+|++|++++..|..+.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 77776 5566677777777777777777766665544
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.4e-28 Score=258.71 Aligned_cols=245 Identities=24% Similarity=0.294 Sum_probs=133.7
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccc-cCCCCCCC-------CCCCCcEEECcCCCCCCCCcccc--C
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLT-GTIPSKLG-------NLNNLVELYLSRSNLNGPIPSTL--G 170 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~l--~ 170 (818)
++|++|++++|.+ .+|..+... |++|+|++|.++ ..+|..+. ++++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3445555555555 444444332 555555555552 22333332 34455555555555554444443 4
Q ss_pred CCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCC-----CCCCEEEccCCcCCCCCCCCCCCCC
Q 003465 171 HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL-----RHLKEVDLSGNKLNGPIASTIGDLT 245 (818)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~ 245 (818)
.+++|++|+|++|.+++. |..++.+ ++|++|++++|++.+..+..+..++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-------------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-------------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCCccEEEccCCCCcch-------------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 445555555555554433 3333333 4555555555555544445555555
Q ss_pred cceEEEccCCCCCCC--CCccc--cCCCCCcEEEccccccCCc--CC-cccCCCCCCCEEEccCCcCCCCCc-hhhcCCC
Q 003465 246 NLNSLDLSSKQLSGP--LPQEI--GYLENLVYLSLNVNNLTGP--IP-STLGRLTSLSDLDLSHNSLFGPIP-PTLSHLT 317 (818)
Q Consensus 246 ~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~ 317 (818)
+|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+.+..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 555555555554432 12222 4555666666666665521 11 223455666677777776665543 3445567
Q ss_pred CCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCC
Q 003465 318 RLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSG 379 (818)
Q Consensus 318 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 379 (818)
+|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7777777777776 5665554 6777777777777755 44 7777778888888877764
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.3e-28 Score=256.62 Aligned_cols=256 Identities=20% Similarity=0.227 Sum_probs=196.0
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLN-GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 199 (818)
++..++|++|++++|.+ .+|..+... |++|+|++|.+. ..+|..+.. ....+.++++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-----------------~~~~~~~l~~L 97 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-----------------GALRVLGISGL 97 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-----------------HHHHHHTTSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-----------------HHHHhcCcCCc
Confidence 45566677777777776 455544332 556666655552 122222210 00001146677
Q ss_pred cEEEcccCcCCccCCccc--cCCCCCCEEEccCCcCCCCCCCCCCCC-----CcceEEEccCCCCCCCCCccccCCCCCc
Q 003465 200 TTLKLFSNQINGCIPLDF--GNLRHLKEVDLSGNKLNGPIASTIGDL-----TNLNSLDLSSKQLSGPLPQEIGYLENLV 272 (818)
Q Consensus 200 ~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 272 (818)
++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..+..+..+++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 777777777776667665 7889999999999999876 7777766 8999999999999988889999999999
Q ss_pred EEEccccccCCc--CCccc--CCCCCCCEEEccCCcCCCC--Cc-hhhcCCCCCCeeeccCCcCCCCcC-ccccCCCCCC
Q 003465 273 YLSLNVNNLTGP--IPSTL--GRLTSLSDLDLSHNSLFGP--IP-PTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLE 344 (818)
Q Consensus 273 ~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 344 (818)
+|++++|++.+. .+..+ ..+++|++|++++|.+.+. ++ ..+..+++|+.|++++|++.+..| ..+..+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 999999998764 23344 8899999999999999842 22 344678999999999999998775 4566789999
Q ss_pred EEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcc
Q 003465 345 RVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNG 403 (818)
Q Consensus 345 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 403 (818)
.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999998 6777766 8999999999999976 55 8999999999999999975
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-24 Score=248.59 Aligned_cols=268 Identities=26% Similarity=0.328 Sum_probs=179.7
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L----- 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGL----- 103 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTC-----
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCC-----
Confidence 35888999988888 6676655 67888888888777 4444 45666666666666552 332 33444
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|++++|.+++. +. .+++|+.|++++|.++. +|.. +++|++|++++|.+++
T Consensus 104 -------------------~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 104 -------------------LELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp -------------------CEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred -------------------CEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 4444444444321 11 23455666666665553 3322 2556666666665553
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
+|. . +++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+
T Consensus 156 l~~---~------------------------~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~ 200 (622)
T 3g06_A 156 LPA---L------------------------PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LP 200 (622)
T ss_dssp CCC---C------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred cCC---c------------------------cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence 221 1 2345555555555553 33 334667777777777764 332 23
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccccCCCCCCEEEC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDL 444 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 444 (818)
++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 688899999998884 443 34789999999999985 55 45689999999999998 5665 6789999999
Q ss_pred cCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccc
Q 003465 445 SLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGL 490 (818)
Q Consensus 445 s~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~ 490 (818)
++|.++ .+|..+..+. +|+.|++++|.+++.+|..+..+
T Consensus 269 s~N~L~-~lp~~l~~l~------~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLS------SETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CSSCCC-SCCGGGGGSC------TTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhcc------ccCEEEecCCCCCCcCHHHHHhc
Confidence 999999 5577777776 89999999999999988876644
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=8.4e-25 Score=227.36 Aligned_cols=217 Identities=27% Similarity=0.304 Sum_probs=140.2
Q ss_pred CCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccC
Q 003465 61 SDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGT 140 (818)
Q Consensus 61 ~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 140 (818)
.++|.|.|+.|...+. .++++++++.++ .+|..+. ++|++|+|++|.+++.
T Consensus 2 ~~~C~~~~~~C~c~~~--------------------------~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~ 52 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNN--------------------------KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL 52 (270)
T ss_dssp CCCBGGGTCSBEEETT--------------------------TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCC
T ss_pred CccCCCCCCCCEeCCC--------------------------CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCee
Confidence 5789999999963222 345556666655 3444443 4677777777777755
Q ss_pred CCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCC
Q 003465 141 IPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNL 220 (818)
Q Consensus 141 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 220 (818)
.+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++
T Consensus 53 ~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 53 PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence 55567777777777777777765444555667777777777777765555556667777777777777766656666666
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEc
Q 003465 221 RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDL 300 (818)
Q Consensus 221 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 300 (818)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 77777777777666555555666666666666666666555555566666666666666666544445555666666666
Q ss_pred cCCcCC
Q 003465 301 SHNSLF 306 (818)
Q Consensus 301 s~n~l~ 306 (818)
++|.+.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 666654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-27 Score=255.22 Aligned_cols=257 Identities=21% Similarity=0.179 Sum_probs=129.8
Q ss_pred CcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 103 LESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
++.++++.+.+...+...+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444455555544444444455566666666666665555556666666666666666653322 55566666666666
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLP 262 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 262 (818)
|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6555321 2255556666655555433322 3445555555555554444445555555555555555554333
Q ss_pred cccc-CCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCC
Q 003465 263 QEIG-YLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLE 341 (818)
Q Consensus 263 ~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 341 (818)
..+. .+++|++|++++|.+++. +. ... +++|++|++++|++++ +|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~ 214 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVV------------------------FAKLKTLDLSSNKLAF-MGPEFQSAA 214 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCC------------------------CTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccc------------------------cccCCEEECCCCcCCc-chhhhcccC
Confidence 3332 344555555555554432 11 122 4444555555554442 222344445
Q ss_pred CCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCC-CCCCcccCCCCCCCEEEcc
Q 003465 342 NLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLN 397 (818)
Q Consensus 342 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 397 (818)
+|+.|++++|++.+ +|..+..+++|+.|++++|.+. +.++..+..+++|+.|+++
T Consensus 215 ~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 55555555555542 3444455555555555555554 3444455555555555555
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-27 Score=254.90 Aligned_cols=269 Identities=23% Similarity=0.227 Sum_probs=197.9
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
..++.++++.+.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 346677778877765555556677788888888888887777788888888888888888875443 777788888888
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITML 135 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCc
Confidence 887776422 235666666666665533222 234555555555655555
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhh-cCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTL-SHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGD 363 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 363 (818)
.+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++.+. +..+..
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~ 212 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcc
Confidence 55555666677777777777666555555 3678888888888888754 3 233589999999999999865 445889
Q ss_pred CCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEecccC-cCcccCCc
Q 003465 364 LTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLN-GSIPSELMNCFSLQSLILSNN-SLTGRIPS 431 (818)
Q Consensus 364 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~ 431 (818)
+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.|++++| .+.+..|.
T Consensus 213 l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999999998 46778999999999999999998 778888999999999999955 45655544
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.2e-30 Score=296.69 Aligned_cols=405 Identities=15% Similarity=0.126 Sum_probs=190.3
Q ss_pred cCCCCCCcEEEcCCCCCccc---CCc------------cccCCCcCceecccCcccccCCCCCCC-CCCCCcEEECcCC-
Q 003465 97 FSCFPNLESFRIWYSNISGN---IPS------------EIGALSKLQILDLSHNNLTGTIPSKLG-NLNNLVELYLSRS- 159 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~---~~~------------~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n- 159 (818)
+..+++|++|+++++..... .|. .+..+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 56678888888887653211 111 123566777777777776655444443 4667777777776
Q ss_pred CCCCC-CccccCCCCCCCEEEccCCCCCCCCccCC----CCCCCCcEEEcccCc--CCc-cCCccccCCCCCCEEEccCC
Q 003465 160 NLNGP-IPSTLGHLTRLSILDLSSNSLVGPIPFTL----GHLTQLTTLKLFSNQ--ING-CIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 160 ~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n 231 (818)
.++.. ++..+.++++|++|+|++|.+++..+..+ ..+++|++|++++|. +.. .++..+.++++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33321 23333466777777777776654333222 255567777766665 211 01111233466666666665
Q ss_pred cCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEE-EccCCcCCCCCc
Q 003465 232 KLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDL-DLSHNSLFGPIP 310 (818)
Q Consensus 232 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~ 310 (818)
...+.++..+..+++|+.|+++.+... +..+.+.+ ++..+.++++|+.| .+.+... +.++
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred CcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 211123444445556666665443210 11111111 11223344444444 2221111 1122
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcC-ccccCCCCCCEEEcCCCccccc-CCcCcCCCCCCCEEeccC---------CcCCC
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIP-LGIGNLENLERVDMSSNKLEGP-IPLTIGDLTNLIYLDLSL---------NQLSG 379 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~ 379 (818)
..+..+++|+.|++++|.+++... ..+..+++|+.|++++| +... ++.....+++|++|++++ +.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 222234444444444444332211 11234444444444444 2111 111111244455554422 22322
Q ss_pred CCCccc-CCCCCCCEEEccCCcCcccCCcccc-CCCCCCEEecc--c----CcCccc-----CCccccCCCCCCEEECcC
Q 003465 380 PIPSTF-GHLTLLKFLNLNSNKLNGSIPSELM-NCFSLQSLILS--N----NSLTGR-----IPSEIRNLSYLHELDLSL 446 (818)
Q Consensus 380 ~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~ 446 (818)
.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.+++. ++..+.++++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 111111 2245566666555555544333332 35566666666 2 333311 111234556666666655
Q ss_pred CcCCccCChhhhc-CccccccccccEEECCCCcCcccCCcccccccCCcccCChhh-cCCcCCCEEECCCCcCccCCcc-
Q 003465 447 NFISGMTPPQHFK-QKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI-GNCSGLLNVTLSNNSLDGTIPL- 523 (818)
Q Consensus 447 N~l~~~~p~~~~~-~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~-~~l~~L~~L~Ls~N~l~~~~p~- 523 (818)
.+++..+..+.. .. +|+.|++++|.+++..+. .+ ..+++|+.|+|++|.+++..+.
T Consensus 442 -~l~~~~~~~l~~~~~------~L~~L~L~~~~i~~~~~~--------------~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAK------KMEMLSVAFAGDSDLGMH--------------HVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp -SCCHHHHHHHHHHCT------TCCEEEEESCCSSHHHHH--------------HHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred -cccHHHHHHHHHhch------hccEeeccCCCCcHHHHH--------------HHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 444433333322 22 566666666665543222 22 4466677777777777554443
Q ss_pred cccCCCCCCeeeCcCCCCc
Q 003465 524 EMGKIIFLEYLDLSYNNIP 542 (818)
Q Consensus 524 ~l~~l~~L~~L~ls~N~l~ 542 (818)
....+++|++|++++|+++
T Consensus 501 ~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TGGGGGGSSEEEEESSCCB
T ss_pred HHHhCCCCCEEeeeCCCCC
Confidence 2344667777777777664
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-26 Score=257.12 Aligned_cols=217 Identities=24% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEE
Q 003465 124 LSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLK 203 (818)
Q Consensus 124 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 203 (818)
+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3456666666666665555556666666666666666554333 5556666666666665553221 25555566
Q ss_pred cccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcccc-CCCCCcEEEccccccC
Q 003465 204 LFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG-YLENLVYLSLNVNNLT 282 (818)
Q Consensus 204 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 282 (818)
+++|.+++..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 655555543332 234555555555555555455555555555555555555554444443 4555555555555555
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
+. +. ...+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 33 11 2234555555555555543222 24444555555555555442 3444444444444444444443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.2e-26 Score=254.89 Aligned_cols=238 Identities=22% Similarity=0.223 Sum_probs=150.5
Q ss_pred CCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCE
Q 003465 146 GNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKE 225 (818)
Q Consensus 146 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 225 (818)
..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 445578888888888887777788888888888888888876554 777788888888888776432 2256666
Q ss_pred EEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcC
Q 003465 226 VDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSL 305 (818)
Q Consensus 226 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 305 (818)
|++++|.+++..+.. +++|+.|++++|.+++..|.. ++.+++|+.|++++|.+
T Consensus 104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLD------------------------EGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBC------------------------GGGGSSEEEEECTTSCC
T ss_pred EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchh------------------------hcCCCCCCEEECCCCCC
Confidence 666666665543322 344555555555555444444 44445555555555555
Q ss_pred CCCCchhhc-CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcc
Q 003465 306 FGPIPPTLS-HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPST 384 (818)
Q Consensus 306 ~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 384 (818)
.+..|..+. .+++|+.|+|++|.+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred CCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence 444444443 45555555555555554311 2245666666666666665333 36666777777777777764 4556
Q ss_pred cCCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEecc
Q 003465 385 FGHLTLLKFLNLNSNKLN-GSIPSELMNCFSLQSLILS 421 (818)
Q Consensus 385 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls 421 (818)
+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 667777777777777776 5566667777777777765
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6e-28 Score=281.37 Aligned_cols=405 Identities=16% Similarity=0.092 Sum_probs=245.4
Q ss_pred cccCCCcCceecccCccccc---CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCC-C
Q 003465 120 EIGALSKLQILDLSHNNLTG---TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG-H 195 (818)
Q Consensus 120 ~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~ 195 (818)
.+.++++|++|+|+++.... ..|..++.. ....++.....+++|++|+|++|.+++..+..+. .
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~------------~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 128 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGY------------VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB------------CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccch------------hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh
Confidence 46678899999999875321 122221100 0000111122344555555555554433333332 3
Q ss_pred CCCCcEEEcccC-cCCcc-CCccccCCCCCCEEEccCCcCCCCCCCC----CCCCCcceEEEccCCC--CCCC-CCcccc
Q 003465 196 LTQLTTLKLFSN-QINGC-IPLDFGNLRHLKEVDLSGNKLNGPIAST----IGDLTNLNSLDLSSKQ--LSGP-LPQEIG 266 (818)
Q Consensus 196 l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~--l~~~-~~~~l~ 266 (818)
+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.. ...+++|++|++++|. ++.. +...+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 455555555555 22221 2222334556666666666554432222 2355677777777765 1110 111123
Q ss_pred CCCCCcEEEcccc-ccCCcCCcccCCCCCCCEEEccCCc-------CCCCCchhhcCCCCCCee-eccCCcCCCCcCccc
Q 003465 267 YLENLVYLSLNVN-NLTGPIPSTLGRLTSLSDLDLSHNS-------LFGPIPPTLSHLTRLTTL-KLFSNQINGSIPLGI 337 (818)
Q Consensus 267 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l 337 (818)
.+++|++|++++| .++ .++..+..+++|+.|+++.+. +.+ ++..+.++++|+.| .+.+... +.++..+
T Consensus 209 ~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~ 285 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVY 285 (594)
T ss_dssp HCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGH
T ss_pred hCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHH
Confidence 4678888888887 333 366667778888888866553 222 34467889999999 4444332 3455555
Q ss_pred cCCCCCCEEEcCCCcccccCC-cCcCCCCCCCEEeccCCcCCCC-CCcccCCCCCCCEEEccC---------CcCcccCC
Q 003465 338 GNLENLERVDMSSNKLEGPIP-LTIGDLTNLIYLDLSLNQLSGP-IPSTFGHLTLLKFLNLNS---------NKLNGSIP 406 (818)
Q Consensus 338 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------N~l~~~~~ 406 (818)
..+++|+.|++++|.+.+... ..+..+++|+.|++++| ++.. ++.....+++|++|++++ +.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 678999999999999764332 23568899999999998 4322 222334589999999944 45554322
Q ss_pred cccc-CCCCCCEEecccCcCcccCCcccc-CCCCCCEEECc--C----CcCCccCCh-h----hhcCccccccccccEEE
Q 003465 407 SELM-NCFSLQSLILSNNSLTGRIPSEIR-NLSYLHELDLS--L----NFISGMTPP-Q----HFKQKHSIRDRLLTYVN 473 (818)
Q Consensus 407 ~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~-~----~~~~~~~~~~~~L~~l~ 473 (818)
..+. .+++|+.|++..|.+++..+..+. .+++|+.|+++ + |.+++.... . +..+. +|+.|+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~------~L~~L~ 438 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK------DLRRLS 438 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT------TCCEEE
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC------CccEEe
Confidence 2333 489999999999999876555554 58999999999 4 566533221 1 22233 799999
Q ss_pred CCCCcCcccCCcccccccCCcccCChhhcC-CcCCCEEECCCCcCccCCcccc-cCCCCCCeeeCcCCCCcccCCc---c
Q 003465 474 HQFNRLSGQIPMTIGGLSKLSGSVPSEIGN-CSGLLNVTLSNNSLDGTIPLEM-GKIIFLEYLDLSYNNIPGTVPE---F 548 (818)
Q Consensus 474 ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~---~ 548 (818)
+++ .+++..+. .++. +++|+.|+|++|.+++..+..+ ..+++|++|++++|++++..+. .
T Consensus 439 L~~-~l~~~~~~--------------~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 439 LSG-LLTDKVFE--------------YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp CCS-SCCHHHHH--------------HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred ecC-cccHHHHH--------------HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 976 55543332 4444 8899999999999988777666 6799999999999999654433 1
Q ss_pred cccCCCCCcccCc
Q 003465 549 INRIMPADLVPMI 561 (818)
Q Consensus 549 ~~~~~~~~~~~~n 561 (818)
....+....+.+|
T Consensus 504 ~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 504 KLETMRSLWMSSC 516 (594)
T ss_dssp GGGGSSEEEEESS
T ss_pred hCCCCCEEeeeCC
Confidence 2234444444444
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=219.34 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=115.1
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777766666666777777777777777765555566667777777777777665555666666677777776
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCcc-CCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce----EEEccCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN----SLDLSSKQ 256 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n~ 256 (818)
+|.+.+..+..+..+++|++|++++|.+++. +|..+.++++|++|++++|++++..+..+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655555566666666666666666542 355566666666666666665544444443333333 44444444
Q ss_pred CCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 257 LSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 443222222 1224444444444444333333334444444444444433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=218.11 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=63.7
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
+|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444445555555555555555544444444445555555555
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCC-CCCCCCCCCcceEEEccCCCCC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGP-IASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 5544443333344444444444444444331 2333333344444444444333
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-22 Score=209.49 Aligned_cols=202 Identities=26% Similarity=0.281 Sum_probs=134.4
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5677888888887 4665554 568888888888876666677788888888888887775555556777777777777
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI 285 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (818)
+|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777665566677777777777777776666666666667777777776666554444566666666666666666544
Q ss_pred CcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 286 PSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 286 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 445555566666666666655444444555555555555555543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.2e-24 Score=220.48 Aligned_cols=207 Identities=27% Similarity=0.283 Sum_probs=99.9
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCc
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT 200 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 200 (818)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3444555555555555542 1 234455555555555555543 1 2445555555555555555544444445555555
Q ss_pred EEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 201 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
+|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 55555555554444444555555555555555544444444445555555555555544444444444455555555555
Q ss_pred cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCcccc
Q 003465 281 LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIG 338 (818)
Q Consensus 281 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (818)
+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|.+++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 4444444444444455555544444322 23344444444444444444433
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-23 Score=218.51 Aligned_cols=229 Identities=26% Similarity=0.294 Sum_probs=156.3
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+..+..+++.++.+.+. ..+..+++|++|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 17 ~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred hHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 345666777877777644 335678889999999998873 3 3578888899999988888753 367788888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 88888888766666777888888888888877666666777777777777777777665555666677777777777666
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIG 362 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 362 (818)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+.|.+|..++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 5555555666666666666666665555555556666666666665542 233455555555555555555444
Q ss_pred CC
Q 003465 363 DL 364 (818)
Q Consensus 363 ~l 364 (818)
.+
T Consensus 244 ~~ 245 (272)
T 3rfs_A 244 SV 245 (272)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-22 Score=211.30 Aligned_cols=204 Identities=26% Similarity=0.252 Sum_probs=138.4
Q ss_pred CcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 96 NFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 96 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.+.+++++++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 3566777788888777776 3454443 5777778888777766667777777777777777777643 32 2667777
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777776 45666677777777777777777666666777777777777777776665566666677777777777
Q ss_pred CCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 256 QLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 256 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+++...+..+..+++|++|+|++|+++ .+|..+...++|+.|+|++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 766554445556666666666666666 45555555566666666666554
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.4e-22 Score=208.59 Aligned_cols=202 Identities=30% Similarity=0.279 Sum_probs=121.3
Q ss_pred ccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCc
Q 003465 121 IGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLT 200 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 200 (818)
++++++++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567777888888888777 4555443 577778888877776666677777777777777777764322 25667777
Q ss_pred EEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 201 TLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 201 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777666 455556666666666666666665555556666666666666666655444444555555555555555
Q ss_pred cCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcC
Q 003465 281 LTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQI 329 (818)
Q Consensus 281 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 329 (818)
++...+..+..+++|+.|++++|++. .+|..+..+++|+.|+|++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55433333444555555555555544 2333333344444444444443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.7e-22 Score=204.15 Aligned_cols=190 Identities=28% Similarity=0.306 Sum_probs=104.8
Q ss_pred CCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCC
Q 003465 62 DHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTI 141 (818)
Q Consensus 62 ~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 141 (818)
+||.|.|+.|... .++++++++.+. .+|..+. ++|++|+|++|.+++..
T Consensus 3 ~Cp~~~gC~C~~~----------------------------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~ 51 (251)
T 3m19_A 3 TCETVTGCTCNEG----------------------------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLS 51 (251)
T ss_dssp -CHHHHSSEEEGG----------------------------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCC
T ss_pred cCCCCCceEcCCC----------------------------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccC
Confidence 5889999999521 133444444444 3333333 35666666666666555
Q ss_pred CCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCC
Q 003465 142 PSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLR 221 (818)
Q Consensus 142 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 221 (818)
+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..|.+++
T Consensus 52 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 55566666666666666666655555556666666666666666554445555555566666655555544444455555
Q ss_pred CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 222 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555555555555444444555555555555555555444444444455555555555444
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=5.5e-24 Score=231.19 Aligned_cols=259 Identities=20% Similarity=0.199 Sum_probs=127.2
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC----ccccCCC-CCCEEEccCCcCCCCCCCCCCCC-----Ccc
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP----LDFGNLR-HLKEVDLSGNKLNGPIASTIGDL-----TNL 247 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L 247 (818)
+++++|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666666655555567777777766665444 4455555 56666666666654444333332 555
Q ss_pred eEEEccCCCCCCCCCcccc----CC-CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcC-CCCCCe
Q 003465 248 NSLDLSSKQLSGPLPQEIG----YL-ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSH-LTRLTT 321 (818)
Q Consensus 248 ~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~ 321 (818)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 5555555555543333222 22 44444444444444332222111 0111 134444
Q ss_pred eeccCCcCCCCc----CccccCCC-CCCEEEcCCCcccccCCcCc----CCC-CCCCEEeccCCcCCCC----CCcccCC
Q 003465 322 LKLFSNQINGSI----PLGIGNLE-NLERVDMSSNKLEGPIPLTI----GDL-TNLIYLDLSLNQLSGP----IPSTFGH 387 (818)
Q Consensus 322 L~L~~n~l~~~~----~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~l~~~----~~~~~~~ 387 (818)
|+|++|.+++.. +..+..++ +|+.|++++|.+.+..+..+ ..+ ++|+.|+|++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 444444444321 11222232 45555555555544333222 222 3555555555555432 2223333
Q ss_pred -CCCCCEEEccCCcCcccCC----ccccCCCCCCEEecccCcCccc-------CCccccCCCCCCEEECcCCcCCccCCh
Q 003465 388 -LTLLKFLNLNSNKLNGSIP----SELMNCFSLQSLILSNNSLTGR-------IPSEIRNLSYLHELDLSLNFISGMTPP 455 (818)
Q Consensus 388 -l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 455 (818)
.++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+.++++|+.||+++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2356666666666654322 2234556666666666663322 222445666677777777777665444
Q ss_pred h
Q 003465 456 Q 456 (818)
Q Consensus 456 ~ 456 (818)
.
T Consensus 303 ~ 303 (362)
T 3goz_A 303 P 303 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2e-23 Score=226.83 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=129.9
Q ss_pred EEccCCCCCCCCCccccCCCCCcEEEccccccCCcCC----cccCCCC-CCCEEEccCCcCCCCCchhhcCC-----CCC
Q 003465 250 LDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIP----STLGRLT-SLSDLDLSHNSLFGPIPPTLSHL-----TRL 319 (818)
Q Consensus 250 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~L 319 (818)
++++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666655555555556666666666665444 4455555 56666666666665555444443 566
Q ss_pred CeeeccCCcCCCCcCcc----ccCC-CCCCEEEcCCCcccccCCcCc----CC-CCCCCEEeccCCcCCCCCCcccCCCC
Q 003465 320 TTLKLFSNQINGSIPLG----IGNL-ENLERVDMSSNKLEGPIPLTI----GD-LTNLIYLDLSLNQLSGPIPSTFGHLT 389 (818)
Q Consensus 320 ~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~ 389 (818)
++|+|++|.+++..+.. +..+ ++|+.|++++|.+.+..+..+ .. .++|++|++++|.+++..+..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 66666666655444332 2222 455555555555554333222 12 135555555555554322111
Q ss_pred CCCEEEccCCcCcccCCccccCCC-CCCEEecccCcCcccCCccc----cCC-CCCCEEECcCCcCCccCChhhhcCccc
Q 003465 390 LLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSLTGRIPSEI----RNL-SYLHELDLSLNFISGMTPPQHFKQKHS 463 (818)
Q Consensus 390 ~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 463 (818)
++..+..++ +|++|+|++|.+++..+..+ ..+ ++|+.|+|++|.+++.....+......
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111222222 44444444444443333222 222 245555555555444221111110000
Q ss_pred cccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCCcCccCCc-------ccccCCCCCCeeeC
Q 003465 464 IRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIP-------LEMGKIIFLEYLDL 536 (818)
Q Consensus 464 ~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~l 536 (818)
....|+.|++++|.+++..+.. +...+..+++|+.|+|++|.+++..+ ..+..++.|+.||+
T Consensus 223 -~~~~L~~L~Ls~N~l~~~~~~~----------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 223 -IPNHVVSLNLCLNCLHGPSLEN----------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp -SCTTCCEEECCSSCCCCCCHHH----------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred -CCCCceEEECcCCCCCcHHHHH----------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 0013455555555544332211 11134556677777777777544433 34566777778888
Q ss_pred cCCCCcccCC
Q 003465 537 SYNNIPGTVP 546 (818)
Q Consensus 537 s~N~l~g~ip 546 (818)
++|++.+..|
T Consensus 292 ~~N~l~~~~~ 301 (362)
T 3goz_A 292 NGKEIHPSHS 301 (362)
T ss_dssp TSCBCCGGGC
T ss_pred CCCcCCCcch
Confidence 8888766544
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.1e-24 Score=233.21 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=144.4
Q ss_pred CCccccCCCCCcEEEccccccCCcC----CcccCCCCCCCEEEccCCcC---CCCCchhh-------cCCCCCCeeeccC
Q 003465 261 LPQEIGYLENLVYLSLNVNNLTGPI----PSTLGRLTSLSDLDLSHNSL---FGPIPPTL-------SHLTRLTTLKLFS 326 (818)
Q Consensus 261 ~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~L~~ 326 (818)
++..+..+++|++|+|++|.++... +..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3444555566666666666665432 23355666666666666432 23334333 4566666666666
Q ss_pred CcCCC----CcCccccCCCCCCEEEcCCCcccccCCcCcC----CC---------CCCCEEeccCCcCC-CCCC---ccc
Q 003465 327 NQING----SIPLGIGNLENLERVDMSSNKLEGPIPLTIG----DL---------TNLIYLDLSLNQLS-GPIP---STF 385 (818)
Q Consensus 327 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~Ls~n~l~-~~~~---~~~ 385 (818)
|.+.+ .++..+..+++|+.|+|++|.+.+..+..+. .+ ++|++|++++|.++ ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66665 2455556666666666666666433222222 22 56666666666665 2222 234
Q ss_pred CCCCCCCEEEccCCcCcc-----cCCccccCCCCCCEEecccCcCc----ccCCccccCCCCCCEEECcCCcCCccCChh
Q 003465 386 GHLTLLKFLNLNSNKLNG-----SIPSELMNCFSLQSLILSNNSLT----GRIPSEIRNLSYLHELDLSLNFISGMTPPQ 456 (818)
Q Consensus 386 ~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 456 (818)
..+++|+.|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~- 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA- 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-
Confidence 455666666666666652 22224555666666666666664 34555556666666666666665543111
Q ss_pred hhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhh--cCCcCCCEEECCCCcCcc----CCcccc-cCCC
Q 003465 457 HFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEI--GNCSGLLNVTLSNNSLDG----TIPLEM-GKII 529 (818)
Q Consensus 457 ~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~ 529 (818)
.+|..+ +.+++|+.|+|++|.+++ .+|..+ .+++
T Consensus 263 ---------------------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 263 ---------------------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp ---------------------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred ---------------------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 122344 347889999999999988 588777 6789
Q ss_pred CCCeeeCcCCCCcccC
Q 003465 530 FLEYLDLSYNNIPGTV 545 (818)
Q Consensus 530 ~L~~L~ls~N~l~g~i 545 (818)
+|++|++++|++++..
T Consensus 304 ~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 304 DLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTSBSCTTS
T ss_pred CceEEEccCCcCCcch
Confidence 9999999999987544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7e-24 Score=232.75 Aligned_cols=244 Identities=18% Similarity=0.220 Sum_probs=130.7
Q ss_pred cCCccccCCCcCceecccCcccccC----CCCCCCCCCCCcEEECcCCCC---CCCCcccc-------CCCCCCCEEEcc
Q 003465 116 NIPSEIGALSKLQILDLSHNNLTGT----IPSKLGNLNNLVELYLSRSNL---NGPIPSTL-------GHLTRLSILDLS 181 (818)
Q Consensus 116 ~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l---~~~~p~~l-------~~l~~L~~L~L~ 181 (818)
.++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3556677777888888888877754 334466777888888877543 33444444 567777777777
Q ss_pred CCCCCC----CCccCCCCCCCCcEEEcccCcCCccCCcccc----CC---------CCCCEEEccCCcCCC-CCC---CC
Q 003465 182 SNSLVG----PIPFTLGHLTQLTTLKLFSNQINGCIPLDFG----NL---------RHLKEVDLSGNKLNG-PIA---ST 240 (818)
Q Consensus 182 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~l~~-~~~---~~ 240 (818)
+|.+++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++. .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3555666677777777777776533222222 22 556666666665541 111 22
Q ss_pred CCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCC---cCCcccCCCCCCCEEEccCCcCC----CCCchhh
Q 003465 241 IGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTG---PIPSTLGRLTSLSDLDLSHNSLF----GPIPPTL 313 (818)
Q Consensus 241 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l 313 (818)
+..+++|++|++++|.++.. + ..+..+..+++|+.|+|++|.++ ..+|..+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred HHhCCCcCEEECcCCCCCHh----------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 33444555555555544310 1 11223344444444444444443 2334444
Q ss_pred cCCCCCCeeeccCCcCCCC----cCccc--cCCCCCCEEEcCCCcccc----cCCcCc-CCCCCCCEEeccCCcCCCCC
Q 003465 314 SHLTRLTTLKLFSNQINGS----IPLGI--GNLENLERVDMSSNKLEG----PIPLTI-GDLTNLIYLDLSLNQLSGPI 381 (818)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 381 (818)
..+++|+.|+|++|.+++. ++..+ +.+++|+.|++++|.+.+ .+|..+ .++++|++|++++|.+++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4455555555555554432 23333 225555555555555554 233333 33555556666665555443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=211.96 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=95.3
Q ss_pred CcEEECcCCCCCCCCcccc--CCCCCCCEEEccCCCCCCCCc----cCCCCCCCCcEEEcccCcCCccCCccccCCCCCC
Q 003465 151 LVELYLSRSNLNGPIPSTL--GHLTRLSILDLSSNSLVGPIP----FTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLK 224 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 224 (818)
|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..+..|+++++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444443 444444444444444443222 1222344444444444444444444444444455
Q ss_pred EEEccCCcCCCC--C--CCCCCCCCcceEEEccCCCCCCCCCc----cccCCCCCcEEEccccccCCcCCcccCCC---C
Q 003465 225 EVDLSGNKLNGP--I--ASTIGDLTNLNSLDLSSKQLSGPLPQ----EIGYLENLVYLSLNVNNLTGPIPSTLGRL---T 293 (818)
Q Consensus 225 ~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~ 293 (818)
+|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..+++|++|+|++|.+++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555554443321 0 1122344555555555555542 111 12344555555555555555444444444 4
Q ss_pred CCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 294 SLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 294 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
+|++|++++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666666666665 3344332 5666666666666642 22 455566666666666665
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=198.29 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcc-cccCCCCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEE
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN-LTGTIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILD 179 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 179 (818)
+|++|++++|.+++..+..|+++++|++|+|++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666664 5544444556666666666665 566544444555566666666
Q ss_pred ccCCCCCCCCccCCCCCCCCc---EEEcccC-cCCccCCccccCCCCCC-EEEccCCcCCCCCCCCCCCCCcceEEEccC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLT---TLKLFSN-QINGCIPLDFGNLRHLK-EVDLSGNKLNGPIASTIGDLTNLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 254 (818)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66655553 333 44444444 5555555 55444444444455555 5555555444222222222 3444444444
Q ss_pred CC-CCCCCCccccCC-CCCcEEEccccccC
Q 003465 255 KQ-LSGPLPQEIGYL-ENLVYLSLNVNNLT 282 (818)
Q Consensus 255 n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~ 282 (818)
|. ++...+..+..+ ++|++|++++|.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 433333333333 34444444444433
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.5e-23 Score=225.64 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=112.9
Q ss_pred CcEEEcCCCCCcccCCccccCC--CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCC-CccccCCCCCCCEEE
Q 003465 103 LESFRIWYSNISGNIPSEIGAL--SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGP-IPSTLGHLTRLSILD 179 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 179 (818)
++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666666554 3345555 6777777777777655444 44567777777777766544 555666777777777
Q ss_pred ccCCCCCCCCccCCCCCCCCcEEEcccC-cCCc-cCCccccCCCCCCEEEccCC-cCCCC-CCCCCCCCC-cceEEEccC
Q 003465 180 LSSNSLVGPIPFTLGHLTQLTTLKLFSN-QING-CIPLDFGNLRHLKEVDLSGN-KLNGP-IASTIGDLT-NLNSLDLSS 254 (818)
Q Consensus 180 L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~L~~ 254 (818)
+++|.+++..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666556666666777777777776 4553 24444556666666666666 55432 233344455 555555555
Q ss_pred C--CCC-CCCCccccCCCCCcEEEccccc-cCCcCCcccCCCCCCCEEEccCC
Q 003465 255 K--QLS-GPLPQEIGYLENLVYLSLNVNN-LTGPIPSTLGRLTSLSDLDLSHN 303 (818)
Q Consensus 255 n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n 303 (818)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5 232 1223334445555555555555 44344444444555555555554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=209.35 Aligned_cols=227 Identities=20% Similarity=0.175 Sum_probs=186.4
Q ss_pred CCCCCcEEEcCCCCCcccCCc---cccCCCcCceecccCcccccCCCCCC--CCCCCCcEEECcCCCCCCCCc----ccc
Q 003465 99 CFPNLESFRIWYSNISGNIPS---EIGALSKLQILDLSHNNLTGTIPSKL--GNLNNLVELYLSRSNLNGPIP----STL 169 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l 169 (818)
.-..++.|.+..+.+....-. .+..+++|++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344678899988877532111 12345779999999999999999888 899999999999999987655 345
Q ss_pred CCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCcc--C--CccccCCCCCCEEEccCCcCCCCCCC----CC
Q 003465 170 GHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGC--I--PLDFGNLRHLKEVDLSGNKLNGPIAS----TI 241 (818)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l 241 (818)
..+++|++|+|++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH
Confidence 6799999999999999988888999999999999999998652 2 2334789999999999999963 222 24
Q ss_pred CCCCcceEEEccCCCCCCCCCccccCC---CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCC
Q 003465 242 GDLTNLNSLDLSSKQLSGPLPQEIGYL---ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTR 318 (818)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 318 (818)
..+++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 678999999999999998878777766 69999999999999 6677664 8999999999999864 33 678899
Q ss_pred CCeeeccCCcCCC
Q 003465 319 LTTLKLFSNQING 331 (818)
Q Consensus 319 L~~L~L~~n~l~~ 331 (818)
|+.|++++|+++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.7e-20 Score=192.45 Aligned_cols=181 Identities=28% Similarity=0.304 Sum_probs=137.2
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888887 5666554 57888888888888777777888888888888888888777777788888888888
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888876667777788888888888887766666677777777777777777766555677777777777777777766
Q ss_pred CCcccCCCCCCCEEEccCCcCCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGP 308 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~ 308 (818)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666677777777777776544
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.4e-21 Score=197.31 Aligned_cols=198 Identities=20% Similarity=0.203 Sum_probs=172.0
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCCCCCCEEEccC-CCCCCCCccCCCCCCCCcEE
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHLTRLSILDLSS-NSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 202 (818)
++|++|+|++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999997777789999999999999997 8866667899999999999999 99997777789999999999
Q ss_pred EcccCcCCccCCccccCCCCCC---EEEccCC-cCCCCCCCCCCCCCcce-EEEccCCCCCCCCCccccCCCCCcEEEcc
Q 003465 203 KLFSNQINGCIPLDFGNLRHLK---EVDLSGN-KLNGPIASTIGDLTNLN-SLDLSSKQLSGPLPQEIGYLENLVYLSLN 277 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 277 (818)
++++|.+++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999986 565 88899998 9999999 99877777899999999 9999999998 444443344899999999
Q ss_pred ccc-cCCcCCcccCCC-CCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCc
Q 003465 278 VNN-LTGPIPSTLGRL-TSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQ 328 (818)
Q Consensus 278 ~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 328 (818)
+|. ++...+..+..+ ++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 995 987777788999 9999999999999854433 67899999998763
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.6e-23 Score=219.66 Aligned_cols=224 Identities=21% Similarity=0.234 Sum_probs=114.0
Q ss_pred CCcEEEcccCcCCccCCccccCC--CCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC-CCccccCCCCCcEE
Q 003465 198 QLTTLKLFSNQINGCIPLDFGNL--RHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP-LPQEIGYLENLVYL 274 (818)
Q Consensus 198 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 274 (818)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776665 3344444 6667777776666654433 34456666666666655433 44445555555555
Q ss_pred EccccccCCcCCcccCCCCCCCEEEccCC-cCCCC-CchhhcCCCCCCeeeccCC-cCCCC-cCccccCCC-CCCEEEcC
Q 003465 275 SLNVNNLTGPIPSTLGRLTSLSDLDLSHN-SLFGP-IPPTLSHLTRLTTLKLFSN-QINGS-IPLGIGNLE-NLERVDMS 349 (818)
Q Consensus 275 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls 349 (818)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 55555555444555555555555555555 34321 3333444555555555555 44432 233344444 45555555
Q ss_pred CCcccccCCcCcCCCCCCCEEeccCCcCC-CCCCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEecccCc-Cc
Q 003465 350 SNKLEGPIPLTIGDLTNLIYLDLSLNQLS-GPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNCFSLQSLILSNNS-LT 426 (818)
Q Consensus 350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 426 (818)
+|.+ .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.
T Consensus 204 ~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 204 GYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp SCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred CCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 4421 222 2233334445555555555555 444444455555555555555553 22
Q ss_pred ccCCccccCCCCCCEEECcCC
Q 003465 427 GRIPSEIRNLSYLHELDLSLN 447 (818)
Q Consensus 427 ~~~p~~l~~l~~L~~L~Ls~N 447 (818)
......+.++++|+.|++++|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 111123445556666666655
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.3e-21 Score=202.44 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=97.7
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 344555555555555543 22 35555555555555555553322 5555555555555555553 22 3555555555
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCC
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------------------- 168 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------------------- 168 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-------------------
Confidence 55555555532 2 14555555555555555543222 4444455555555544443221
Q ss_pred CCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 169 -------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred -------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 4445555555555555543222 445555555555555555433 2555566666666666554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.7e-21 Score=203.62 Aligned_cols=212 Identities=26% Similarity=0.398 Sum_probs=127.8
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.++..+.+..+.+++.+ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L 92 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (308)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence 33444455555555332 23456677777777777763 34 46667777777777777765433 667777777777
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
++|.+++. ..+..+++|++|++++|++++.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred cCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 77776643 24666777777777777766432 26666777777777776664322 55666677777777766643
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCccc
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLE 354 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 354 (818)
.+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.++
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 22 5666666666666666654322 5555666666666665554332 445555555555555554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.3e-20 Score=187.55 Aligned_cols=181 Identities=22% Similarity=0.237 Sum_probs=104.0
Q ss_pred CCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC
Q 003465 63 HCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP 142 (818)
Q Consensus 63 ~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 142 (818)
.|.|.++.|+..+- ..++. .-.++|++|++++|.+.+..+..|+++++|++|+|++|++++..+
T Consensus 6 ~C~~~~v~c~~~~l-------------~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 6 SCSGTTVECYSQGR-------------TSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp EEETTEEECCSSCC-------------SSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred EECCCEEEecCCCc-------------cCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 37899999975331 01121 123467777777777765555556677777777777777765544
Q ss_pred CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCC
Q 003465 143 SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRH 222 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 222 (818)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 55666666777777766666554455566666666666666666544444555666666666666655444444555555
Q ss_pred CCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCcccc
Q 003465 223 LKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIG 266 (818)
Q Consensus 223 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 266 (818)
|++|++++|.+.+ .+++|+.|+++.|.++|.+|.+++
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 5555555554432 223344444444444444444333
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.6e-19 Score=194.89 Aligned_cols=199 Identities=20% Similarity=0.161 Sum_probs=101.7
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCc-cCCCCCCCCcE-EEcc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIP-FTLGHLTQLTT-LKLF 205 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~L~ 205 (818)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 445444 2456666666666653333455666666666666666544333 23555555543 3444
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccC-CCCCCCCCccccCC-CCCcEEEccccccCC
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSS-KQLSGPLPQEIGYL-ENLVYLSLNVNNLTG 283 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~ 283 (818)
.|+++...|..|.++++|++|++++|++....+..+....++..|++.+ +.+....+..+..+ ..+++|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666655555666666666666666666554444444555555666543 33443333333333 245556666666553
Q ss_pred cCCcccCCCCCCCEEEccC-CcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 284 PIPSTLGRLTSLSDLDLSH-NSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 284 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
++......++|+.|++++ |.+....+..|..+++|+.|++++|+++
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 333333344555555543 3333222234445555555555555544
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2e-19 Score=178.79 Aligned_cols=181 Identities=25% Similarity=0.333 Sum_probs=125.9
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.+. .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 44566666555 334333 357888888888887666666778888888888888887655556777888888888888
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8776655567777788888888777776666667777777777777777776655566777777777777775543
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTS 294 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 294 (818)
.+++|++|+++.|++++.+|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456677777777777777666655443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.8e-19 Score=194.45 Aligned_cols=221 Identities=19% Similarity=0.123 Sum_probs=109.7
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC-CCCCCCCCCcE-EECcCCCCCCCCccccCCCCCCCEE
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP-SKLGNLNNLVE-LYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
+++++|+|++|.++...+..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+++|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666666666665444556666666666666666654443 34566665553 4445566665555566666666666
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEccc-CcCCccCCccccCCC-CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFS-NQINGCIPLDFGNLR-HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-------------------- 169 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-------------------- 169 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--------------------
Confidence 6666666554444444455555555543 334433333343332 344455555554422
Q ss_pred CCCCCCccccCCCCCcEEEccc-cccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCc
Q 003465 257 LSGPLPQEIGYLENLVYLSLNV-NNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPL 335 (818)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 335 (818)
+.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|
T Consensus 170 -----~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 170 -----HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp -----CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-
T ss_pred -----ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-
Confidence 22222333444444442 3333222234455555555555555554332222 2333444433332222333
Q ss_pred cccCCCCCCEEEcCC
Q 003465 336 GIGNLENLERVDMSS 350 (818)
Q Consensus 336 ~l~~l~~L~~L~Ls~ 350 (818)
.+..+++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 244555555555544
No 99
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.81 E-value=2.1e-21 Score=203.61 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=76.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHh------------cccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFS------------STSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~------------~~~~~~~~ 755 (818)
|+|||||+++++||+|||+||.+.... ..++..+||++||||| ...+...+.|+ ...+....
T Consensus 173 ~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~ 252 (308)
T 4gt4_A 173 TRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS 252 (308)
T ss_dssp GGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC
T ss_pred ccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 22222223332 11222222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+++.....+...+.+.++...+.+++..||+.+|++||+|.||+++|+..
T Consensus 253 ~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 253 NQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 2222222112221122445666788899999999999999999999999865
No 100
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.81 E-value=5e-21 Score=202.75 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=68.5
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||.+.... ...+..+||++||||| ..+++ ..+.|+. .. +....
T Consensus 186 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~ 265 (329)
T 4aoj_A 186 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265 (329)
T ss_dssp GGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred HhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 22222 2333321 12 22222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..++++....+...+.+..+...+.+++..||+.||++||||.||+++|+.+.+
T Consensus 266 ~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 266 NTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 222222211111112233455667789999999999999999999999998843
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.4e-19 Score=200.62 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=119.3
Q ss_pred CCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 102 NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+|++|+|++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46777888887776 665553 67888888888887 556 446777888888887775 555 544 77777777
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPL 261 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 261 (818)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 46667777777776664 343 34566666666666654 333 33 55555555555555 33
Q ss_pred CccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCC
Q 003465 262 PQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNL 340 (818)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 340 (818)
|. +.. +| ....+.|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 196 p~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 32 221 22 011122377777777776 356666667777777777777777666665543
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.8e-18 Score=196.30 Aligned_cols=186 Identities=26% Similarity=0.329 Sum_probs=100.1
Q ss_pred CCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEcc
Q 003465 222 HLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLS 301 (818)
Q Consensus 222 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 301 (818)
+|+.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 333332 45555555555555 333 234455555555555553 333 322 44444444
Q ss_pred CCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCC
Q 003465 302 HNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPI 381 (818)
Q Consensus 302 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 381 (818)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|.+++ +
T Consensus 129 ~N~l~~-------------------------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-------------------------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-------------------------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-------------------------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 444443 332 34445555555555543 222 34455555555555554 3
Q ss_pred CcccCCCCCCCEEEccCCcCcccCCccccCCCCC-------CEEecccCcCcccCCccccCCCCCCEEECcCCcCCccCC
Q 003465 382 PSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSL-------QSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 382 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 33 33 55666666666655 3444 332 44 77777777777 567766667778888888888777776
Q ss_pred hhhhc
Q 003465 455 PQHFK 459 (818)
Q Consensus 455 ~~~~~ 459 (818)
..+..
T Consensus 248 ~~l~~ 252 (571)
T 3cvr_A 248 ESLSQ 252 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 103
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.78 E-value=1.8e-20 Score=195.59 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=75.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||....... .....+||++||||| ..+++ ..+.|+. .. +....
T Consensus 156 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~ 235 (299)
T 4asz_A 156 TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS 235 (299)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred HhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 8999999999999999999997754322 234567999999999 22222 3333321 11 22222
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+++.....+...+.+..+...+.+++..||+.+|++||+|.||++.|+++.
T Consensus 236 ~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 236 NNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 22222221111111223345566788999999999999999999999999874
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.4e-18 Score=172.42 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=99.3
Q ss_pred CCCCCCccceeeCCCCCEEEEEecCCccccCCCCCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCccccc
Q 003465 60 HSDHCKWAGIVCNLNGSIIRISLSGVNGIRGKLDQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTG 139 (818)
Q Consensus 60 ~~~~c~w~gv~c~~~~~v~~l~l~~~~g~~~~l~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 139 (818)
..+.|+|.+|.|...+ +..++.. + .++|++|+|++|.+.+..|..|..+++|++|+|++|.++.
T Consensus 15 ~~~~Cs~~~v~c~~~~-------------l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR-------------HASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp TTCEEETTEEECTTSC-------------CSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEeCCEeEccCCC-------------cCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 6678999999996432 1111221 1 2567777777777776666667777777777777777765
Q ss_pred CCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccC
Q 003465 140 TIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGN 219 (818)
Q Consensus 140 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 219 (818)
..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 44455666677777777777766555555666666666666666666 45555666666666666666666544445555
Q ss_pred CCCCCEEEccCCcCC
Q 003465 220 LRHLKEVDLSGNKLN 234 (818)
Q Consensus 220 l~~L~~L~l~~n~l~ 234 (818)
+++|+.|++++|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 556666666555554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=8.4e-19 Score=201.43 Aligned_cols=187 Identities=23% Similarity=0.348 Sum_probs=97.7
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
..+.+..+.+.+..+ +..+++|+.|+|++|.+.. +| .+..+++|++|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 333444444443322 4456666666666666653 23 35666666666666666664333 566666666666666
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQ 263 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (818)
.+.+ ++ .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 6653 22 455566666666666665542 2355555555555555555532 344455555555555555544333
Q ss_pred cccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCC
Q 003465 264 EIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 264 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44445555555555544432 12444444444444444443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1e-18 Score=200.72 Aligned_cols=193 Identities=26% Similarity=0.356 Sum_probs=133.6
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+..+..+++..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 45567778888888875443 5678889999999999874 44 58888999999999998886544 7788888888
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+|++|.+.+. ..+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 8888888752 3577777888888887777652 3466667777777777776643 45566666666666666666
Q ss_pred CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5443 55666666666666666542 235555555666555555543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.9e-18 Score=181.05 Aligned_cols=106 Identities=30% Similarity=0.416 Sum_probs=48.2
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCC
Q 003465 217 FGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLS 296 (818)
Q Consensus 217 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 296 (818)
+..+++|++|++++|++++. +.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 33444444444444444321 2333444444444444444432 234444555555555555543322 44455555
Q ss_pred EEEccCCcCCCCCchhhcCCCCCCeeeccCCcCC
Q 003465 297 DLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQIN 330 (818)
Q Consensus 297 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 330 (818)
.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 182 ~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 555555555432 2 2455555555555555544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.9e-18 Score=181.12 Aligned_cols=170 Identities=28% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+++|++|++++|.+... + .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 344555555555555432 2 24555555555555555553322 4555555555555555542 22 24555555555
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555554432 2344445555555555544432 234444444444444444443222 444444444444444444
Q ss_pred CCCCccccCCCCCcEEEccccccC
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
+. + .+..+++|+.|++++|.++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 21 1 2334444444444444433
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.4e-17 Score=166.71 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666666555556666666666666666666555666666666666666666666444444555666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666655555555555555555555555554444455555555555555544
No 110
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.75 E-value=6.8e-19 Score=183.65 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=70.7
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC------CCCcc-hHHHHhc---------c--cCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------T--SDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~--~~~~ 753 (818)
|+|||||+++++||+|||+|+...... ...+..+||++||||| ..+++ ..+.|+. . .+..
T Consensus 160 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~ 239 (307)
T 3omv_A 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH 239 (307)
T ss_dssp SSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCC
Confidence 899999999999999999999875432 2345678999999999 12333 3344432 1 1211
Q ss_pred cc----ccceecccCC-CcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 754 IT----LTYILDQRIS-PPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 754 ~~----~~~~~d~~l~-~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.. +..++..... +.....+.++...+.+++..||+.+|++||||.||++.|+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 240 INNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp CCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 11 1111111111 1111123345566778899999999999999999999998763
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.7e-17 Score=166.11 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=74.2
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 2343332 45555555555555444445555555555555555555444555555555555555555
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQ 256 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 256 (818)
.++...+..|..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5554333334445555555555555544444444444444444444444444333334444444444444443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6e-18 Score=183.31 Aligned_cols=156 Identities=32% Similarity=0.311 Sum_probs=77.3
Q ss_pred cCceecccCcccccCCCCCCC-CCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 126 KLQILDLSHNNLTGTIPSKLG-NLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
.+++|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555544444444 5555555555555555444445555555555555555555444444555555555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCC---CCCCcceEEEccCCCCCCCCCccccCCCC--CcEEEcccc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTI---GDLTNLNSLDLSSKQLSGPLPQEIGYLEN--LVYLSLNVN 279 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n 279 (818)
++|+++...+..|.++++|++|+|++|+++...+..+ ..+++|+.|+|++|.++...+..+..++. ++.|+|++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555555445555555555555555555543322222 33445555555555554333333333333 233444444
Q ss_pred cc
Q 003465 280 NL 281 (818)
Q Consensus 280 ~l 281 (818)
.+
T Consensus 200 ~~ 201 (361)
T 2xot_A 200 PL 201 (361)
T ss_dssp CE
T ss_pred Cc
Confidence 33
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=165.66 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=65.7
Q ss_pred CcEEEcCCCCCcccCC-ccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEcc
Q 003465 103 LESFRIWYSNISGNIP-SEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLS 181 (818)
Q Consensus 103 L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 181 (818)
+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4555555555554433 234555555555555555554444455555555555555555554444445555555555555
Q ss_pred CCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcC
Q 003465 182 SNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 182 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
+|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 5555544444444455555555555554444444444444444444444444
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=165.14 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=75.5
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCC-CCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIP-SKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSS 182 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 182 (818)
+++++++|.++. +|..+. +.+++|+|++|.+++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355565555542 344332 234555555555554433 2345555555555555555544444555555555555555
Q ss_pred CCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 183 NSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 183 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555444444555555555555555555444444444445555555444444444444444444444444444433
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=179.61 Aligned_cols=129 Identities=28% Similarity=0.244 Sum_probs=80.8
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccC-CCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLG-HLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
++++++++.++ .+|..+. ..+++|+|++|.+++..+..+. .+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777776 4555443 3467777777777755555555 667777777777776655555666666666666666
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 66665555556666666666666666655555555555555555555555553
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.6e-17 Score=162.96 Aligned_cols=152 Identities=26% Similarity=0.345 Sum_probs=109.0
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++....+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44566666655 4454443 77888888888888777777888888888888888887555566777888888888888
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSG 259 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 259 (818)
.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 877666666777777777777777777 556667777777777777777776555566666777777777766653
No 117
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.73 E-value=8e-19 Score=184.47 Aligned_cols=115 Identities=16% Similarity=0.292 Sum_probs=72.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC--CC-------Cc-chHHHHhcc---------c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--KH-------PQ-EILSLFSST---------S 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~~-------~~-~~l~~~~~~---------~ 750 (818)
|+|||||+++++||+|||+|+....... .....+||++||||| .. ++ ...+.|+.. .
T Consensus 136 p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~ 215 (303)
T 3hmm_A 136 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 215 (303)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred cccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCC
Confidence 8999999999999999999998765432 223568999999999 11 11 123334311 0
Q ss_pred C----------CCc-------ccc----ceecccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 D----------PHI-------TLT----YILDQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~----------~~~-------~~~----~~~d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. +.. ... .+.+..+++... ....++...+.+++.+||+.||++||||.||+++|+++
T Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l 295 (303)
T 3hmm_A 216 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 0 000 000 012222222211 11235667788999999999999999999999999987
Q ss_pred C
Q 003465 808 P 808 (818)
Q Consensus 808 ~ 808 (818)
.
T Consensus 296 ~ 296 (303)
T 3hmm_A 296 S 296 (303)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.5e-17 Score=161.99 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=79.8
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45555666666666665 334 4555666666666666543 2234555666666666666665545555555666666
Q ss_pred EEcccCcCCccCCccccCCCCCCEEEccCCc-CCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccc
Q 003465 202 LKLFSNQINGCIPLDFGNLRHLKEVDLSGNK-LNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNN 280 (818)
Q Consensus 202 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 280 (818)
|++++|.+++..+..++.+++|++|++++|. ++. ++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666555455555555555555555555 332 22 344455555555555554431 1 34444444444444444
Q ss_pred c
Q 003465 281 L 281 (818)
Q Consensus 281 l 281 (818)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-17 Score=162.86 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=132.1
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLS 176 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 176 (818)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 456778999999999998 555 68999999999999997763 34788999999999999999877788899999999
Q ss_pred EEEccCCCCCCCCccCCCCCCCCcEEEcccCc-CCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCC
Q 003465 177 ILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQ-INGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSK 255 (818)
Q Consensus 177 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 255 (818)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999999998788889999999999999998 65 445 688999999999999999863 3 7888999999999999
Q ss_pred CCCC
Q 003465 256 QLSG 259 (818)
Q Consensus 256 ~l~~ 259 (818)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8764
No 120
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.70 E-value=2.9e-18 Score=183.05 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~~ 755 (818)
|+|||||+++++||+|||+||.+..+.. .++..+||++||||| +..+...+.|+. .. +....
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~ 292 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 292 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred ccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999998755433 235678999999999 222223333421 11 22211
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+. +........ +..+...+.+++..||+.||++||||.||+++|+++.
T Consensus 293 ~~~~~~~~i~~g~~~~~---p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~ll 346 (353)
T 4ase_A 293 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 346 (353)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 1111 111111111 2334456778889999999999999999999998873
No 121
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.69 E-value=1.3e-17 Score=176.15 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=102.4
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |+||+|.. .+|+.||||++........+.|.+|+
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 33344566 99999995 56999999977655444556688887
Q ss_pred -------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccccc
Q 003465 692 -------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYR 731 (818)
Q Consensus 692 -------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~g 731 (818)
|+ |+|||||+++++||+|||+|+.+..+....+..+||+.
T Consensus 156 g~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~ 235 (346)
T 4fih_A 156 GALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 235 (346)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGG
T ss_pred CcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcC
Confidence 22 89999999999999999999988766555667899999
Q ss_pred eeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 732 YIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 732 y~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
||||| ..+++ ..+.|+.. .+......+++. ....... ..+......+.++...|++.||++
T Consensus 236 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~ 314 (346)
T 4fih_A 236 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQ 314 (346)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-SCGGGSCHHHHHHHHHHSCSSTTT
T ss_pred cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-CccccCCHHHHHHHHHHcCCChhH
Confidence 99999 34444 45566421 111111111111 1111111 111122234556777999999999
Q ss_pred CCChHHHHH
Q 003465 794 VPTMQRVSQ 802 (818)
Q Consensus 794 RP~m~~V~~ 802 (818)
|||+.|+++
T Consensus 315 R~ta~e~l~ 323 (346)
T 4fih_A 315 RATAAELLK 323 (346)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999875
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.4e-17 Score=168.74 Aligned_cols=169 Identities=24% Similarity=0.324 Sum_probs=91.8
Q ss_pred CCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 123 ALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.+.++..+++++|.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 455566666666666633 2 4566666777777776666 334 46666666666666666664433 6666666666
Q ss_pred EcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccC
Q 003465 203 KLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLT 282 (818)
Q Consensus 203 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 282 (818)
++++|++++. +. +.. ++|++|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 6666666542 21 122 5555566655555532 2345555555555555555432 1 3444555555555555554
Q ss_pred CcCCcccCCCCCCCEEEccCCcCC
Q 003465 283 GPIPSTLGRLTSLSDLDLSHNSLF 306 (818)
Q Consensus 283 ~~~~~~l~~l~~L~~L~Ls~n~l~ 306 (818)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 33444444444444444443
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.6e-17 Score=168.58 Aligned_cols=171 Identities=21% Similarity=0.283 Sum_probs=141.2
Q ss_pred CCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 99 CFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 99 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.+.++..++++++.+.+.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777788888887543 57889999999999999884 55 68889999999999999985444 8899999999
Q ss_pred EccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 179 DLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 179 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++. |. +.. ++|++|++++|++++. ..+.++++|++|++++|++++. +.+..+++|+.|++++|.++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 9999999863 33 333 8999999999999864 3588999999999999999864 36888999999999999998
Q ss_pred CCCCccccCCCCCcEEEccccccCCc
Q 003465 259 GPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 259 ~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
+. ..+..+++|++|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 6788899999999999998855
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.6e-18 Score=202.50 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=61.8
Q ss_pred HHHHHHHcC-------CCCCCCCCCCCCCCCCCCccceeeCCCCCEEEEEecC--CccccCCCCCCCcCCCCCCcEEEcC
Q 003465 39 LEREALLNT-------GWWNNSREKASNHSDHCKWAGIVCNLNGSIIRISLSG--VNGIRGKLDQFNFSCFPNLESFRIW 109 (818)
Q Consensus 39 ~~~~~ll~~-------~~~~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~--~~g~~~~l~~~~l~~l~~L~~L~L~ 109 (818)
.++++|++. +|.....|.. .....+.|.++.++. ++++++++.. +... + ...++.++|+
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~----~------~~~l~~l~Ls 199 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTG-DSTPSGTATNSAVST-PLTPKIELFANGKDEA----N------QALLQHKKLS 199 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcC-CCCccccCCCceecC-CccceEEeeCCCCCcc----h------hhHhhcCccC
Confidence 355555542 3555556642 345567888887754 5677776621 1110 1 1123344444
Q ss_pred CCCCcc---------cCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 110 YSNISG---------NIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 110 ~n~~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
.+.+.+ ..+..|..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 200 ~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred cccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 443322 22344445555555555555554 34444444555555555555554 44444555555555555
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCC
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIAS 239 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 239 (818)
++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|.
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 555554 34444455555555555555444 3344444444555555554444444333
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=8.2e-20 Score=208.60 Aligned_cols=187 Identities=24% Similarity=0.237 Sum_probs=99.3
Q ss_pred cCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-------------CCCCCccccCCCCCCCEEE-ccCCCCCC
Q 003465 122 GALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-------------LNGPIPSTLGHLTRLSILD-LSSNSLVG 187 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 187 (818)
..+++|+.|+|++|.++ .+|..++++++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56677778888888776 567777777777777776653 2333444444455555544 333321
Q ss_pred CCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccC
Q 003465 188 PIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGY 267 (818)
Q Consensus 188 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 267 (818)
.+|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 123333333444332111 135555555555553 333 555555555555555555 44555555
Q ss_pred CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCC-chhhcCCCCCCeeeccCCcCCC
Q 003465 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPI-PPTLSHLTRLTTLKLFSNQING 331 (818)
Q Consensus 268 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 331 (818)
+++|++|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5555555555555553 33 4555555555555555555443 4455555555555555555543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=8e-20 Score=208.72 Aligned_cols=204 Identities=20% Similarity=0.153 Sum_probs=121.1
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcc-------------cccCCCCCCCCCCCCcEEE-CcCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN-------------LTGTIPSKLGNLNNLVELY-LSRSNLN 162 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~-Ls~n~l~ 162 (818)
+..+++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467889999999999997 789999999999999998875 5667778888999999998 6665432
Q ss_pred CCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCC
Q 003465 163 GPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIG 242 (818)
Q Consensus 163 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 242 (818)
+|+.+.+++|.++...+ ..|++|++++|.+++ +|. ++++++|+.|++++|.++ .+|..++
T Consensus 424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 22333334443332111 124455555555543 233 455555555555555554 3444555
Q ss_pred CCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCcC-CcccCCCCCCCEEEccCCcCCCCCch---hhcCCCC
Q 003465 243 DLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPI-PSTLGRLTSLSDLDLSHNSLFGPIPP---TLSHLTR 318 (818)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~ 318 (818)
.+++|+.|+|++|.+++ +| .+..+++|++|+|++|.+++.. |..++.+++|+.|+|++|.+++..+. .+..+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 55555555555555553 33 4555555555555555555443 55555555555555555555543321 1233555
Q ss_pred CCeee
Q 003465 319 LTTLK 323 (818)
Q Consensus 319 L~~L~ 323 (818)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 55554
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.3e-17 Score=196.47 Aligned_cols=228 Identities=21% Similarity=0.179 Sum_probs=115.2
Q ss_pred CCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEc
Q 003465 269 ENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDM 348 (818)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 348 (818)
+.++.|+|.+|.+.. .+. ..|+.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 345666666666553 121 224444454444432 233344444 45666777888888888
Q ss_pred CCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCccc
Q 003465 349 SSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGR 428 (818)
Q Consensus 349 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 428 (818)
++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 888887 56666678888888899888888 67788888889999999999988 67888888899999999999887 6
Q ss_pred CCccccCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCC
Q 003465 429 IPSEIRNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLL 508 (818)
Q Consensus 429 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~ 508 (818)
+|..|.++++|+.|+|++|++++.+|..+..... ....+++++|.++|.+|.. |+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----~~~~l~l~~N~l~~~~p~~--------------------l~ 362 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----TGLIFYLRDNRPEIPLPHE--------------------RR 362 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----HHHHHHHHHCCCCCCCCCC----------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----hhhHHhhccCcccCcCccc--------------------cc
Confidence 7878888999999999999998887766644321 1224677888888777762 33
Q ss_pred EEECCCC--------cCccCCcccccCCCCCCeeeCcCCCCcccCC
Q 003465 509 NVTLSNN--------SLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 546 (818)
Q Consensus 509 ~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 546 (818)
.|++++| .+.+..+..+.++..+....+++|-+.+...
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ---------------------------------------CCCGGGC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 4455555 4445555555666667777777877765433
No 128
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.67 E-value=4.6e-18 Score=179.98 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=99.6
Q ss_pred hhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh------------------------------
Q 003465 649 DLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA------------------------------ 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~------------------------------ 691 (818)
+|.....|| |+||+|.. .+|+.||||.+.... ....+.|.+|+
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy 104 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDY 104 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeC
Confidence 455556677 99999985 579999999765432 22345688887
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||||+++++||+|||+|+.+.......+.
T Consensus 105 ~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 184 (350)
T 4b9d_A 105 CEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARA 184 (350)
T ss_dssp CTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccc
Confidence 22 89999999999999999999987543333456
Q ss_pred cccccceeCCC---CCCcc-hHHHHhc-----------ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
.+||+.||||| ..+++ ..+.|+. ..+......+++...+.+...+.+......+.++...|++.|
T Consensus 185 ~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~d 264 (350)
T 4b9d_A 185 CIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRN 264 (350)
T ss_dssp HHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred cCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCC
Confidence 78999999999 44444 4555542 122222222222222211110111122234556777999999
Q ss_pred CCCCCChHHHHH
Q 003465 791 PKSVPTMQRVSQ 802 (818)
Q Consensus 791 p~~RP~m~~V~~ 802 (818)
|++||++.|+++
T Consensus 265 P~~R~s~~e~l~ 276 (350)
T 4b9d_A 265 PRDRPSVNSILE 276 (350)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhHCcCHHHHhc
Confidence 999999999875
No 129
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.66 E-value=1.8e-16 Score=169.33 Aligned_cols=171 Identities=27% Similarity=0.307 Sum_probs=124.3
Q ss_pred CcccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccc-hhhhhHhhh------------------
Q 003465 635 DGRIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSA-FFKSFQNEA------------------ 691 (818)
Q Consensus 635 ~~~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~-~~~~f~~E~------------------ 691 (818)
...++++++..++++|.....+| |.||+|...+|+.||||++...... ....|.+|+
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 35689999999999999988888 8999999888999999976544322 223456665
Q ss_pred -----------------------------------------------------c---c-------ccccccCCCCccccc
Q 003465 692 -----------------------------------------------------H---V-------FNNILLNSEFEAFFG 708 (818)
Q Consensus 692 -----------------------------------------------------h---~-------~~NILLd~~~~~ki~ 708 (818)
+ + |+|||+++++.+||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 1 2 899999999999999
Q ss_pred ccccceeccCCCC-CccccccccceeCCC----CCCcch--------------------------------HHHHhcccC
Q 003465 709 NFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEI--------------------------------LSLFSSTSD 751 (818)
Q Consensus 709 DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~--------------------------------l~~~~~~~~ 751 (818)
|||+++....... ......||++|+||| ...+.. ...|.....
T Consensus 177 Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 256 (326)
T 3uim_A 177 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLL 256 (326)
T ss_dssp CCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTT
T ss_pred cCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHh
Confidence 9999998754332 344567999999999 111111 222222222
Q ss_pred CCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 752 PHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 752 ~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.......+.+..+.... ..++...+.+++..|++.+|++||+|.||+++|++..
T Consensus 257 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 257 KEKKLEALVDVDLQGNY---KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp SSCCSTTSSCTTCTTSC---CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred hchhhhhhcChhhcccc---CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 33334455555555444 5677888999999999999999999999999999773
No 130
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.65 E-value=9.7e-17 Score=173.91 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=102.0
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....|| |.||+|.. .+|+.||||.+........+.|.+|+
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCC
Confidence 44455677 99999995 56999999977655544556688887
Q ss_pred -------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccccc
Q 003465 692 -------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYR 731 (818)
Q Consensus 692 -------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~g 731 (818)
|+ |+|||||.++.+||+|||+|+.+..+....+..+||+.
T Consensus 233 G~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~ 312 (423)
T 4fie_A 233 GALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 312 (423)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTT
T ss_pred CcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcC
Confidence 22 89999999999999999999988666555667899999
Q ss_pred eeCCC---CCCcc-hHHHHhcc---------c--CCCccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCC
Q 003465 732 YIAPA---KHPQE-ILSLFSST---------S--DPHITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKS 793 (818)
Q Consensus 732 y~aPE---~~~~~-~l~~~~~~---------~--~~~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~ 793 (818)
||||| ..+++ ..+.|+.+ . +......+++. ....... .........+.++...|++.||++
T Consensus 313 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~~dli~~~L~~dP~~ 391 (423)
T 4fie_A 313 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKVSPSLKGFLDRLLVRDPAQ 391 (423)
T ss_dssp TCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCTTSSCHHHHHHHHHHSCSSTTT
T ss_pred cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-cccccCCHHHHHHHHHHcCCChhH
Confidence 99999 34444 45556422 1 11111111111 1111110 011111234456777999999999
Q ss_pred CCChHHHHH
Q 003465 794 VPTMQRVSQ 802 (818)
Q Consensus 794 RP~m~~V~~ 802 (818)
||++.|+++
T Consensus 392 R~ta~ell~ 400 (423)
T 4fie_A 392 RATAAELLK 400 (423)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999876
No 131
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.64 E-value=6.1e-17 Score=172.58 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=118.2
Q ss_pred ccchHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------
Q 003465 637 RIAFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------- 691 (818)
Q Consensus 637 ~~~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------- 691 (818)
++++.++.+++++|.....+| |.||+|...+|..||||..........+.|.+|+
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 345555566778888888888 8999999888999999976655544556677776
Q ss_pred ------------------------------------------------------cc---ccccccCCCCcccccccccce
Q 003465 692 ------------------------------------------------------HV---FNNILLNSEFEAFFGNFGVAR 714 (818)
Q Consensus 692 ------------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~ 714 (818)
|+ |+||++|+++.+||+|||+++
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence 22 899999999999999999998
Q ss_pred eccCCC--CCccccccccceeCCC----CCCcchHHHHhc---------c--cC-------------------CCccccc
Q 003465 715 LLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS---------T--SD-------------------PHITLTY 758 (818)
Q Consensus 715 ~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~--~~-------------------~~~~~~~ 758 (818)
...... .......||.+|+||| ...+...+.|+. . .+ ....+.+
T Consensus 188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (321)
T 2qkw_B 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267 (321)
T ss_dssp ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCS
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHH
Confidence 764322 2234567999999999 111112222321 1 01 0111233
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
++++.+.... ..+....+.+++..|++.+|++||+|.||++.|+.+.
T Consensus 268 ~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l 314 (321)
T 2qkw_B 268 IVDPNLADKI---RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314 (321)
T ss_dssp SSSSSCTTCS---CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcChhhcccc---CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 3444443333 5667788889999999999999999999999999873
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1e-16 Score=171.30 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCC-EEEccCCcCcccCCccccCCCCCCEE
Q 003465 340 LENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLK-FLNLNSNKLNGSIPSELMNCFSLQSL 418 (818)
Q Consensus 340 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 418 (818)
+++|+.|++++|++.......|.++++|+.|++.+| +....+..|.++++|+ .+++.+ .++...+..|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344444444444444333344444444444444444 3333344455555555 555544 4443334445555555555
Q ss_pred ecccCcCcccCCccccCCCCCCEEE
Q 003465 419 ILSNNSLTGRIPSEIRNLSYLHELD 443 (818)
Q Consensus 419 ~Ls~N~l~~~~p~~l~~l~~L~~L~ 443 (818)
++++|.++...+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555543
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=9.7e-16 Score=146.42 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=97.6
Q ss_pred CCCCcEEEcCCCCCc-ccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++|++|++++|.+. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366788888888877 67777778888888888888887754 667778888888888888876677777777888888
Q ss_pred EccCCCCCCCC-ccCCCCCCCCcEEEcccCcCCccCC---ccccCCCCCCEEEccCCcCC
Q 003465 179 DLSSNSLVGPI-PFTLGHLTQLTTLKLFSNQINGCIP---LDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 179 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 234 (818)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888777532 2567777777777777777775444 35667777777777777664
No 134
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.62 E-value=1.4e-16 Score=167.76 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=69.6
Q ss_pred ccccccCCCC-cccccccccceeccCCCC-----CccccccccceeCCC---CCCcc-hHHHHhc-----------ccCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPA---KHPQE-ILSLFSS-----------TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-----------~~~~ 752 (818)
|+|||||.++ ++||+|||+|+.+..+.. ....++||+.||||| ..+++ ..+.|+. ..+.
T Consensus 178 p~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~ 257 (336)
T 4g3f_A 178 ADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT 257 (336)
T ss_dssp GGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred HHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCC
Confidence 9999999997 699999999998865422 123578999999999 34444 4455542 1122
Q ss_pred CccccceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....+++........ ...+......+.++...|++.||++|||+.|+++.|..+
T Consensus 258 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 258 QYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp TTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 2122222111111110 011222334556677899999999999999999887654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.5e-16 Score=170.06 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=69.3
Q ss_pred CCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCC-EEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 316 LTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLI-YLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 316 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
+++|+.|+|++|+++...+..|.++++|+.|++.+| +.......|.++++|+ .+++.+ .++...+..|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777766666544455667777777777766 5555566677777777 777766 5555556677777777777
Q ss_pred EccCCcCcccCCccccCCCCCCEEe
Q 003465 395 NLNSNKLNGSIPSELMNCFSLQSLI 419 (818)
Q Consensus 395 ~L~~N~l~~~~~~~~~~l~~L~~L~ 419 (818)
++++|.++...+..|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 7777777766666777777777765
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.8e-15 Score=146.46 Aligned_cols=109 Identities=30% Similarity=0.406 Sum_probs=52.5
Q ss_pred cCceecccCcccccCCCC-CCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 126 KLQILDLSHNNLTGTIPS-KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
+|++|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555555433332 2444555555555555555444444555555555555555554444444444445555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCC
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 234 (818)
++|++++..|..|..+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555544444444444444444444444443
No 137
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.61 E-value=1.4e-16 Score=163.40 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=88.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~---------------------------- 691 (818)
++|.....|| |+||+|.. .+|+.||||.+.... ....+.|.+|+
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 3555556677 89999995 569999999765432 12234578887
Q ss_pred ------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCcccc
Q 003465 692 ------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLI 726 (818)
Q Consensus 692 ------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~ 726 (818)
|+ |+|||+|+++++||+|||+|+...... ..+..
T Consensus 93 Ey~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~-~~~~~ 171 (275)
T 3hyh_A 93 EYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN-FLKTS 171 (275)
T ss_dssp ECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-------------
T ss_pred eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC-ccCCe
Confidence 22 899999999999999999999765432 33457
Q ss_pred ccccceeCCC---CCCc-c-hHHHHhcc-----------cCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCC
Q 003465 727 AGTYRYIAPA---KHPQ-E-ILSLFSST-----------SDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSK 790 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~-~-~l~~~~~~-----------~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~ 790 (818)
+||+.||||| ..++ + ..+.|+.. .+......+++.....+.. ..+......+.++...|++.|
T Consensus 172 ~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~d 250 (275)
T 3hyh_A 172 CGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVY-TLPKFLSPGAAGLIKRMLIVN 250 (275)
T ss_dssp ---CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-CCCTTSCHHHHHHHHHHSCSS
T ss_pred eECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCC-CCCCCCCHHHHHHHHHHccCC
Confidence 8999999999 3332 2 45566421 1222222222111111110 001111233456777999999
Q ss_pred CCCCCChHHHHH
Q 003465 791 PKSVPTMQRVSQ 802 (818)
Q Consensus 791 p~~RP~m~~V~~ 802 (818)
|++|||+.|+++
T Consensus 251 P~~R~s~~eil~ 262 (275)
T 3hyh_A 251 PLNRISIHEIMQ 262 (275)
T ss_dssp GGGSCCHHHHHH
T ss_pred hhHCcCHHHHHc
Confidence 999999999986
No 138
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.61 E-value=1e-16 Score=166.79 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=99.0
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~---------------------------- 691 (818)
++|.....|| |+||+|.. .+|+.||||.+.... ....+.+.+|+
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 3466666777 89999985 679999999765432 12335577777
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCC--CCc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS--SNR 723 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~--~~~ 723 (818)
|+ |+|||||+++.+||+|||+|+.+..+. ...
T Consensus 112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~ 191 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 191 (311)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence 22 899999999999999999999886443 234
Q ss_pred cccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceecccCCCcCccchHHHHHHHHHHHHhccC
Q 003465 724 TLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQ 788 (818)
Q Consensus 724 ~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~ 788 (818)
...+||+.||||| ..+++ ..+.|+.. .+...+..+++...+.... ..+......+.++...|++
T Consensus 192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~-~~p~~~s~~~~dli~~lL~ 270 (311)
T 4aw0_A 192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEY-DFPEKFFPKARDLVEKLLV 270 (311)
T ss_dssp CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC-CCCTTCCHHHHHHHHHHSC
T ss_pred cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC-CCCcccCHHHHHHHHHHcc
Confidence 5689999999999 33444 45556421 2222222222222111111 0011112234567779999
Q ss_pred CCCCCCCChHHH
Q 003465 789 SKPKSVPTMQRV 800 (818)
Q Consensus 789 ~~p~~RP~m~~V 800 (818)
.||++||++.|+
T Consensus 271 ~dp~~R~t~~e~ 282 (311)
T 4aw0_A 271 LDATKRLGCEEM 282 (311)
T ss_dssp SSGGGSTTSGGG
T ss_pred CCHhHCcChHHH
Confidence 999999999886
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.9e-15 Score=145.45 Aligned_cols=130 Identities=25% Similarity=0.358 Sum_probs=96.3
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCcc-ccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEccc
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPS-TLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 206 (818)
+++++++|.++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888776 56665543 788888888888755553 377788888888888888877777777888888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCC
Q 003465 207 NQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGP 260 (818)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 260 (818)
|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888777776777777777777777777776677777777777777777766643
No 140
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.61 E-value=2.5e-16 Score=164.61 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC------------CccccccccceeCCC---CCCcc-hHHHHhccc------C
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS------------NRTLIAGTYRYIAPA---KHPQE-ILSLFSSTS------D 751 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~------------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~~------~ 751 (818)
|+||||+.++++||+|||+|+.+..+.. ..+..+||+.||||| ..+++ ..+.|+... .
T Consensus 146 p~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~ 225 (299)
T 4g31_A 146 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY 225 (299)
T ss_dssp GGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS
T ss_pred HHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc
Confidence 8999999999999999999998754321 124568999999999 33333 445554221 1
Q ss_pred CCccc---cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH--HHccC
Q 003465 752 PHITL---TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ--EFLKF 807 (818)
Q Consensus 752 ~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~--~L~~~ 807 (818)
+.... ...+.........+...+.......+...|++.||++||++.|+++ .++++
T Consensus 226 Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~ 286 (299)
T 4g31_A 226 PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL 286 (299)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence 11100 0111111111111112223334556888999999999999999986 45544
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.7e-15 Score=144.69 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=86.4
Q ss_pred CCcCceecccCcccc-cCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEE
Q 003465 124 LSKLQILDLSHNNLT-GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTL 202 (818)
Q Consensus 124 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 202 (818)
.++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367788888888776 56677777777777777777777754 567777777777777777776566555566777777
Q ss_pred EcccCcCCccC-CccccCCCCCCEEEccCCcCCCCCC---CCCCCCCcceEEEccCCCCC
Q 003465 203 KLFSNQINGCI-PLDFGNLRHLKEVDLSGNKLNGPIA---STIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 203 ~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777666432 1455666666666666666654332 24455555555555555544
No 142
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.60 E-value=6.6e-16 Score=159.84 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=65.5
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhc---------ccCC--Cc-ccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSS---------TSDP--HI-TLT 757 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~---------~~~~--~~-~~~ 757 (818)
|+|||||. ++++||+|||+|+.... ...+..+||++||||| +.+++ ..+.|+. ...+ +. ...
T Consensus 159 p~NILl~~~~g~vKl~DFGla~~~~~--~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~ 236 (290)
T 3fpq_A 159 CDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA 236 (290)
T ss_dssp GGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH
T ss_pred hhheeEECCCCCEEEEeCcCCEeCCC--CccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH
Confidence 89999985 79999999999986432 3345678999999999 22333 4445542 1122 11 111
Q ss_pred ceecccCCCcCc-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKK-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+......+... ..+......+.+++..|++.||++|||+.|+++
T Consensus 237 ~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 237 QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111111111110 011112234567788999999999999999875
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1e-15 Score=143.03 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=94.5
Q ss_pred CCCCcEEEcCCCCCc-ccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEE
Q 003465 100 FPNLESFRIWYSNIS-GNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSIL 178 (818)
Q Consensus 100 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 178 (818)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456788888888877 67777778888888888888887754 667778888888888888876677777777888888
Q ss_pred EccCCCCCCC-CccCCCCCCCCcEEEcccCcCCccCC---ccccCCCCCCEEEcc
Q 003465 179 DLSSNSLVGP-IPFTLGHLTQLTTLKLFSNQINGCIP---LDFGNLRHLKEVDLS 229 (818)
Q Consensus 179 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 229 (818)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888877753 23667777777777777777775544 356677777777664
No 144
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.58 E-value=3.6e-16 Score=162.64 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|+++++||+|||+|+.........+..+||+.||||| ..+++ ..+.|+.. .+......+
T Consensus 154 p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~ 233 (304)
T 3ubd_A 154 PENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE 233 (304)
T ss_dssp GGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH
Confidence 8999999999999999999997655544556688999999999 33433 45556421 222222222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
++........ ..+......+.++...|++.||++||+.
T Consensus 234 ~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 234 TMTMILKAKL-GMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred HHHHHHcCCC-CCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 2211111110 0011122345567779999999999984
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.9e-14 Score=138.63 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEc
Q 003465 101 PNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDL 180 (818)
Q Consensus 101 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 180 (818)
++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777777777776555556667777777777777776555555666677777777777766555555666666666666
Q ss_pred cCCCCCCCCccCCCCCCCCcEEEcccCcCCc
Q 003465 181 SSNSLVGPIPFTLGHLTQLTTLKLFSNQING 211 (818)
Q Consensus 181 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 211 (818)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666665444445566666666666666554
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=2.3e-15 Score=140.68 Aligned_cols=129 Identities=23% Similarity=0.245 Sum_probs=88.8
Q ss_pred CCCcCceecccCcccc-cCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcE
Q 003465 123 ALSKLQILDLSHNNLT-GTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTT 201 (818)
Q Consensus 123 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 201 (818)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 66777778888888888888887754 56777777888888777777666666666777777
Q ss_pred EEcccCcCCcc-CCccccCCCCCCEEEccCCcCCCCCC---CCCCCCCcceEEEcc
Q 003465 202 LKLFSNQINGC-IPLDFGNLRHLKEVDLSGNKLNGPIA---STIGDLTNLNSLDLS 253 (818)
Q Consensus 202 L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 253 (818)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777653 23556666667777776666654333 245555555555543
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=139.71 Aligned_cols=106 Identities=27% Similarity=0.327 Sum_probs=43.8
Q ss_pred cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcc
Q 003465 126 KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLF 205 (818)
Q Consensus 126 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 205 (818)
+|++|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444443 333344444444444444444443333334444444444444444443333334444444444444
Q ss_pred cCcCCccCCccccCCCCCCEEEccCCc
Q 003465 206 SNQINGCIPLDFGNLRHLKEVDLSGNK 232 (818)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~l~~n~ 232 (818)
+|.++...+..|..+++|+.|++++|.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 444443333333334444444444443
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=139.08 Aligned_cols=127 Identities=26% Similarity=0.448 Sum_probs=96.3
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
+++++++|.++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56778888877 5665543 57888888888887 66778888888888888888888777777888888888888888
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
++++..+..|.++++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888777777777777888877777777655556666777777777776654
No 149
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.56 E-value=7.6e-15 Score=155.21 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=116.0
Q ss_pred cccchHHHHHHHhhhhhh------cccc----CcEEEEEcCCCcEEEEEeccccc----cchhhhhHhhh----------
Q 003465 636 GRIAFEEIIRATEDLISD------IALE----LDVTAAFTKHGCLVAEYGSEQGR----SAFFKSFQNEA---------- 691 (818)
Q Consensus 636 ~~~~~~~l~~at~~f~~~------~~ig----g~vy~~~~~~g~~vAvK~~~~~~----~~~~~~f~~E~---------- 691 (818)
..|+++++.++|++|++. ..+| |.||+|.. ++..||||...... ....+.|.+|+
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999987 5677 89999996 68899999654321 22234566666
Q ss_pred ----------------------------------------------------------------cc---ccccccCCCCc
Q 003465 692 ----------------------------------------------------------------HV---FNNILLNSEFE 704 (818)
Q Consensus 692 ----------------------------------------------------------------h~---~~NILLd~~~~ 704 (818)
|+ |+||++|+++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~ 171 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFT 171 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCc
Confidence 22 89999999999
Q ss_pred ccccccccceeccCCCC--CccccccccceeCCC--CC-CcchHHHHhc---------ccCC--Ccc-------------
Q 003465 705 AFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH-PQEILSLFSS---------TSDP--HIT------------- 755 (818)
Q Consensus 705 ~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~-~~~~l~~~~~---------~~~~--~~~------------- 755 (818)
+||+|||+++....... ......||.+|+||| +. .+...+.|+. ...+ ...
T Consensus 172 ~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 251 (307)
T 2nru_A 172 AKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE 251 (307)
T ss_dssp EEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred EEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence 99999999997754322 234567999999999 11 1112223321 1111 100
Q ss_pred -----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 -----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 -----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
+.+.+++.+. ..+......+.+++..|++.+|++||++.+|++.|+++..
T Consensus 252 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 252 DEEKTIEDYIDKKMN----DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp TTSCCHHHHSCSSCS----CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred hhhhhhhhhcccccc----ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 1111222221 2245566778889999999999999999999999998753
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=3e-13 Score=147.48 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=124.7
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEc
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKL 204 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 204 (818)
..++.+.+.+ .++..-...|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .++......|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4444444433 2332333444443 4555555443 33233334444 2455555543 333333344555555555555
Q ss_pred ccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcEEEccccccCCc
Q 003465 205 FSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVYLSLNVNNLTGP 284 (818)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 284 (818)
..|.++......|. ..+|+.+.+..+ ++.....+|.++++|+.+++..+ ++......|.. .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 55555533333333 355555555422 33333444555555555555442 22222233333 345555552 223323
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCC
Q 003465 285 IPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDL 364 (818)
Q Consensus 285 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 364 (818)
....|.++++|+.+++.+|.+.. +......+..|.+|++|+.+++.+ .+.......|.++
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c 322 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN 322 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred ChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC
Confidence 33444445555555554443320 000012233455555555555552 3444444555566
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCC-CCCEEecccCcC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCF-SLQSLILSNNSL 425 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 425 (818)
++|+.+.|..+ ++......|.++ +|+.+++++|.+....+..|..++ +++.|.+..+.+
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66666666433 443444556666 666666666665544444455553 566666665543
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=7e-14 Score=134.64 Aligned_cols=109 Identities=27% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEcc
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 229 (818)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444444444444
Q ss_pred CCcCCCCCCCCCCCCCcceEEEccCCCCC
Q 003465 230 GNKLNGPIASTIGDLTNLNSLDLSSKQLS 258 (818)
Q Consensus 230 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 258 (818)
+|++++..+..+..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 44444333333344444444444444444
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=3.4e-13 Score=147.08 Aligned_cols=267 Identities=9% Similarity=0.065 Sum_probs=178.1
Q ss_pred CCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCE
Q 003465 98 SCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSI 177 (818)
Q Consensus 98 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 177 (818)
..+..++.+.+.. .++..-..+|.++ +|+.++|..+ ++..-..+|.++ +|+.+.+.. .++...+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3446677777764 4554455677775 7999998776 665556678774 699999986 666566678999999999
Q ss_pred EEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCC
Q 003465 178 LDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 178 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 257 (818)
+++.+|.++......|. ..+|+.+.+..+ ++......|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99999888855555555 689999999854 77677778999999999999875 55455667777 789999994 456
Q ss_pred CCCCCccccCCCCCcEEEccccccC-----CcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 258 SGPLPQEIGYLENLVYLSLNVNNLT-----GPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
+......|..+++|+.+++.+|.+. ...+..|.++++|+.++|.+ .+....
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~----------------------- 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG----------------------- 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-----------------------
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-----------------------
Confidence 6566678889999999999887765 22334455555555555542 233222
Q ss_pred cCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCC-CCCEEEccCCcC
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLT-LLKFLNLNSNKL 401 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l 401 (818)
...|.+|++|+.+.+..| +.......|.++ +|+.+++++|.+.......|.+++ +++.|++..+.+
T Consensus 316 -~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 316 -QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 334455555555555433 333344455555 666666666655544455555553 566777666543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=4.9e-13 Score=146.50 Aligned_cols=330 Identities=13% Similarity=0.039 Sum_probs=186.5
Q ss_pred CCCCcCCCCCCcEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCC
Q 003465 93 DQFNFSCFPNLESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHL 172 (818)
Q Consensus 93 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 172 (818)
...+|.++.+|+.+.+.. .++..-..+|.++++|+.++|..+ ++..-...|.++.+|+.+.+..+ +......+|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 445588888999998874 466555667888889999988755 55444567888888887777544 332334456655
Q ss_pred CCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEc
Q 003465 173 TRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDL 252 (818)
Q Consensus 173 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 252 (818)
..++........ ......|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++......+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 444333332222 1223467777788888776543 3344556777777777777655 33344556667777776666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCC
Q 003465 253 SSKQLSGPLPQEIGYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGS 332 (818)
Q Consensus 253 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 332 (818)
..+... +.+......+|+.+.+..+ ++......+..+..|+.+.+..+... .....|..+..++.+....+.+.
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 554322 1222333456666666433 22233345556666776666554332 33345555666666655544322
Q ss_pred cCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCC
Q 003465 333 IPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNC 412 (818)
Q Consensus 333 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 412 (818)
...+..+.+|+.+.+..+ +.......|.++.+|+.++|.++ ++......|.++.+|+.+.+..+ ++..-...|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 123455666666666543 33334455666666666666433 44334455666666666666544 443344456666
Q ss_pred CCCCEEecccCcCcccCCccccCCCCCCE
Q 003465 413 FSLQSLILSNNSLTGRIPSEIRNLSYLHE 441 (818)
Q Consensus 413 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 441 (818)
.+|+.+++..+- . .+...|.++++|+.
T Consensus 366 ~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 366 INLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 666666665432 1 12234555555443
No 154
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.51 E-value=1.3e-14 Score=154.34 Aligned_cols=167 Identities=19% Similarity=0.174 Sum_probs=107.9
Q ss_pred cccchHHHHHHHhh----------hhhhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh---------
Q 003465 636 GRIAFEEIIRATED----------LISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA--------- 691 (818)
Q Consensus 636 ~~~~~~~l~~at~~----------f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~--------- 691 (818)
+.++++++.++++. |.....|| |.||+|... +|+.||||.+........+.|.+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 46899999999875 44445666 899999964 7999999976655444455577776
Q ss_pred -------------------------------------------------------------cc---ccccccCCCCcccc
Q 003465 692 -------------------------------------------------------------HV---FNNILLNSEFEAFF 707 (818)
Q Consensus 692 -------------------------------------------------------------h~---~~NILLd~~~~~ki 707 (818)
|+ |+|||++.++.+||
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl 182 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKL 182 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEE
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEE
Confidence 22 89999999999999
Q ss_pred cccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cccccceec---ccCCCcCc
Q 003465 708 GNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HITLTYILD---QRISPPKK 769 (818)
Q Consensus 708 ~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~~~~~~~d---~~l~~~~~ 769 (818)
+|||+++............+||++|+||| ..+. ...+.|+.. ..+ .....+.+. .......
T Consensus 183 ~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~- 261 (321)
T 2c30_A 183 SDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKL- 261 (321)
T ss_dssp CCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-
T ss_pred eeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCc-
Confidence 99999998765544455678999999999 2222 233334311 111 111001100 0000000
Q ss_pred cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 770 QKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 770 ~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.........+.+++..|++.+|++||++.||++.
T Consensus 262 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 262 KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0011122345667779999999999999999863
No 155
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=6.5e-14 Score=134.73 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=90.7
Q ss_pred cCCCCCCcEEEcCCCCCcccCCccccCCC-cCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 97 FSCFPNLESFRIWYSNISGNIPSEIGALS-KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 97 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
+..+++|++|++++|.+.. +|. +..+. +|++|+|++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5667778888888888774 343 44444 788888888888754 567778888888888888775444445777788
Q ss_pred CEEEccCCCCCCCCcc--CCCCCCCCcEEEcccCcCCccCCcc----ccCCCCCCEEEccCCcC
Q 003465 176 SILDLSSNSLVGPIPF--TLGHLTQLTTLKLFSNQINGCIPLD----FGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l 233 (818)
++|++++|.++ .+|. .+..+++|++|++++|.++. +|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888775 3444 56677777777777777763 3442 66667777777766654
No 156
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.4e-14 Score=152.72 Aligned_cols=54 Identities=33% Similarity=0.409 Sum_probs=40.1
Q ss_pred ccccccCCCCcccccccccceeccCC----CCCccccccccceeCCC----CCCcc-hHHHHh
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD----SSNRTLIAGTYRYIAPA----KHPQE-ILSLFS 747 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~----~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~ 747 (818)
|+|||+|.++.+||+|||+|+.+... ....+..+||+.||||| ...++ .++.|+
T Consensus 186 P~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWS 248 (398)
T 4b99_A 186 PSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWS 248 (398)
T ss_dssp GGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHH
T ss_pred ccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheeh
Confidence 89999999999999999999977433 22345678999999999 22222 456665
No 157
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.45 E-value=3.1e-14 Score=159.08 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=105.0
Q ss_pred hhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
++|.....+| |.||+|...++..||||.+.... ...+.|.+|+
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~ 266 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK 266 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCC
Confidence 3455556676 89999998888999999776543 2345677776
Q ss_pred ----------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCccccc
Q 003465 692 ----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIA 727 (818)
Q Consensus 692 ----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~ 727 (818)
|+ |+|||+++++.+||+|||+++...... .......
T Consensus 267 g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~ 346 (454)
T 1qcf_A 267 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAK 346 (454)
T ss_dssp CBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSS
T ss_pred CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCc
Confidence 22 899999999999999999999764321 1223455
Q ss_pred cccceeCCC----CCCcchHHHHhc----------ccCC--Ccccccee---cccCCCcCccchHHHHHHHHHHHHhccC
Q 003465 728 GTYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYIL---DQRISPPKKQKIVQDIALASIVALACLQ 788 (818)
Q Consensus 728 gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~ 788 (818)
+|++|+||| ...+...+.|+. ...+ .....+++ ....... .+..+...+.+++..|++
T Consensus 347 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~---~~~~~~~~l~~li~~cl~ 423 (454)
T 1qcf_A 347 FPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMP---RPENCPEELYNIMMRCWK 423 (454)
T ss_dssp SCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCC---CCTTSCHHHHHHHHHHTC
T ss_pred ccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcc
Confidence 788999999 222222333321 1111 11111111 1111111 123344567788899999
Q ss_pred CCCCCCCChHHHHHHHccCCCcC
Q 003465 789 SKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 789 ~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
.+|++||+|.+|++.|+.+....
T Consensus 424 ~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 424 NRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp SSGGGSCCHHHHHHHHHTSSSSS
T ss_pred CChhHCcCHHHHHHHHHHHHhcc
Confidence 99999999999999999985433
No 158
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.43 E-value=2.3e-14 Score=152.74 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+. .
T Consensus 179 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~ 258 (325)
T 3kul_A 179 ARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM 258 (325)
T ss_dssp GGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred cceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999998754422 223456788999999 211112223321 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
...++.+........+.+......+.+++..|++.+|++||+|.+|++.|+.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~ 313 (325)
T 3kul_A 259 TNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIR 313 (325)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1111111111110001122334567778889999999999999999999998833
No 159
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.43 E-value=3.7e-14 Score=150.18 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=98.4
Q ss_pred hhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....+| |.||+|.. .+|..||+|.+........+.|.+|+
T Consensus 12 ~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 91 (310)
T 3s95_A 12 LIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKG 91 (310)
T ss_dssp EEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred eeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCC
Confidence 44455666 89999996 56899999976555445566777777
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCC-------
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSN------- 722 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~------- 722 (818)
|+ |+|||+|+++.+||+|||+++........
T Consensus 92 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 171 (310)
T 3s95_A 92 GTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSL 171 (310)
T ss_dssp CBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------------
T ss_pred CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccc
Confidence 22 89999999999999999999977433211
Q ss_pred -------ccccccccceeCCC----CCCcchHHHHhcc---------cCCCc-cccceecccCCCcC---ccchHHHHHH
Q 003465 723 -------RTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHI-TLTYILDQRISPPK---KQKIVQDIAL 778 (818)
Q Consensus 723 -------~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~-~~~~~~d~~l~~~~---~~~~~~~~~~ 778 (818)
....+||++|+||| ...+...+.|+.. ..+.. ......+....... ...+..+...
T Consensus 172 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (310)
T 3s95_A 172 KKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPS 251 (310)
T ss_dssp --------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTT
T ss_pred cccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHH
Confidence 12567999999999 2222223333211 11110 00000000000000 0001112234
Q ss_pred HHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 779 ASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 779 ~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.+++..|++.+|++||++.+|++.|+.+
T Consensus 252 l~~li~~~l~~dP~~Rps~~~l~~~L~~l 280 (310)
T 3s95_A 252 FFPITVRCCDLDPEKRPSFVKLEHWLETL 280 (310)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 66788899999999999999999999987
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=4.2e-12 Score=139.05 Aligned_cols=316 Identities=12% Similarity=-0.018 Sum_probs=179.4
Q ss_pred cccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 114 SGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
+..-..+|.++.+|+.+.|..+ ++..-..+|.++++|+.+++..+ ++......|.++.+|+.+.+..+ +.......|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3334457888888888888643 65455567888888888888654 44344556777888877766544 332333455
Q ss_pred CCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcE
Q 003465 194 GHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273 (818)
Q Consensus 194 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 273 (818)
.++..++...... +.......|.++++|+.+.+..+. .......|.++.+|+.+++..+ ++......+..+..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 5554433332222 222334567777778877776543 2244556677777777777654 33333445566666766
Q ss_pred EEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcc
Q 003465 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353 (818)
Q Consensus 274 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 353 (818)
+.+..+... +.........|+.+.+..+. .......+..+..|+.+.+..+... .....+..+..++.+....+.+
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred eecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence 666554322 22233344566666664332 2223344556666666666554332 3334455666666666655443
Q ss_pred cccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
. ...+..+.+|+.+.+..+ ++......|.++.+|+.+++.++ ++..-...|.+|.+|+.+++..+ ++......|
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred c---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2 234556666666666543 33344455666666666666533 44344455666666666666555 443444556
Q ss_pred cCCCCCCEEECcC
Q 003465 434 RNLSYLHELDLSL 446 (818)
Q Consensus 434 ~~l~~L~~L~Ls~ 446 (818)
.++++|+.+++..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 6666666666654
No 161
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.42 E-value=2.3e-14 Score=151.82 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhccc----------CCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSSTS----------DPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~~~----------~~~--~~~~~ 758 (818)
|+|||+|.++.+||+|||+++...... ......||++|+||| ...+...+.|+... .+. .....
T Consensus 185 p~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~ 263 (311)
T 3p1a_A 185 PANIFLGPRGRCKLGDFGLLVELGTAG-AGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQ 263 (311)
T ss_dssp GGGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHHEEECCCCCEEEccceeeeecccCC-CCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHH
Confidence 899999999999999999998764432 234567999999999 22222333443211 111 00111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+........ .+......+.+++..|++.+|++||++.|+++
T Consensus 264 ~~~~~~~~~---~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 264 LRQGYLPPE---FTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HTTTCCCHH---HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HhccCCCcc---cccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 111111100 01122345677888999999999999999986
No 162
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.41 E-value=9.2e-14 Score=149.20 Aligned_cols=54 Identities=28% Similarity=0.357 Sum_probs=37.4
Q ss_pred ccccccCCC-CcccccccccceeccCCC----------------------------CCccccccccceeCCC---CCC-c
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDS----------------------------SNRTLIAGTYRYIAPA---KHP-Q 740 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~----------------------------~~~~~~~gt~gy~aPE---~~~-~ 740 (818)
|+|||+|.+ +.+||+|||+|+...... ...+..+||++|+||| +.+ +
T Consensus 145 PeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y 224 (361)
T 4f9c_A 145 PSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQ 224 (361)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCC
T ss_pred HHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCC
Confidence 999999987 799999999998664321 0123467999999999 322 2
Q ss_pred c-hHHHHh
Q 003465 741 E-ILSLFS 747 (818)
Q Consensus 741 ~-~l~~~~ 747 (818)
+ ..+.|+
T Consensus 225 ~~~~DiWS 232 (361)
T 4f9c_A 225 TTAIDMWS 232 (361)
T ss_dssp CTHHHHHH
T ss_pred CCccchhh
Confidence 2 456665
No 163
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=2.8e-13 Score=130.20 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=74.1
Q ss_pred CCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEE
Q 003465 315 HLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFL 394 (818)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 394 (818)
.+++|+.|++++|+++. ++......++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444444444444442 222112222555555555555543 345556666666666666664443444666666666
Q ss_pred EccCCcCcccCCc--cccCCCCCCEEecccCcCcccCCcc----ccCCCCCCEEECcCCcCC
Q 003465 395 NLNSNKLNGSIPS--ELMNCFSLQSLILSNNSLTGRIPSE----IRNLSYLHELDLSLNFIS 450 (818)
Q Consensus 395 ~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 450 (818)
++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666664 3443 5666677777777777776 34443 666777777777777654
No 164
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.9e-16 Score=154.47 Aligned_cols=128 Identities=25% Similarity=0.307 Sum_probs=64.6
Q ss_pred CCcEEEcCCCCCcccCCc------cccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCC
Q 003465 102 NLESFRIWYSNISGNIPS------EIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRL 175 (818)
Q Consensus 102 ~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 175 (818)
.++.++++.+.+.+.+|. .|+.+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444444443 55555556666665555553 34 4555555555555555555 344444445555
Q ss_pred CEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCC-ccccCCCCCCEEEccCCcCC
Q 003465 176 SILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIP-LDFGNLRHLKEVDLSGNKLN 234 (818)
Q Consensus 176 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 234 (818)
++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555555555553 22 34445555555555555543211 23444555555555555444
No 165
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.41 E-value=2.1e-13 Score=143.72 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=69.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC---CC------C-cchHHHHhcccCCCc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA---KH------P-QEILSLFSSTSDPHI----- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE---~~------~-~~~l~~~~~~~~~~~----- 754 (818)
|+|||+|.++.+||+|||+|+........ ....+||++|+||| .. + +...+.|+....-..
T Consensus 136 p~Nil~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~ 215 (303)
T 3gxj_A 136 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 215 (303)
T ss_dssp GGGC-CCTTCCC-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGB
T ss_pred HHHeEECCCCCEEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcC
Confidence 89999999999999999999876544321 23457999999999 11 1 013455543221100
Q ss_pred ---------------------cccc----eecccCCCcCcc--chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 ---------------------TLTY----ILDQRISPPKKQ--KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ---------------------~~~~----~~d~~l~~~~~~--~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+ +.+..+...... ...++...+.+++..|++.||++||++.+|+++|+++
T Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l 295 (303)
T 3gxj_A 216 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 295 (303)
T ss_dssp CBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-
T ss_pred CCccccceeeccccccCCCCccHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHh
Confidence 0000 111122221100 1225566788999999999999999999999999998
Q ss_pred CCc
Q 003465 808 PYL 810 (818)
Q Consensus 808 ~~~ 810 (818)
.+.
T Consensus 296 ~~~ 298 (303)
T 3gxj_A 296 SQQ 298 (303)
T ss_dssp CCC
T ss_pred hhh
Confidence 543
No 166
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.41 E-value=1.3e-13 Score=153.77 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=97.5
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....+| |.||+|...++..||||.+..... ..++|.+|+
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~g 263 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 263 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCC
Confidence 344455666 899999988788899997765432 345677776
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Ccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~g 728 (818)
|+ |+|||+++++.+||+|||+++....... ......|
T Consensus 264 sL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~ 343 (452)
T 1fmk_A 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343 (452)
T ss_dssp BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcc
Confidence 22 8999999999999999999997754322 2334567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCC--CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~ 792 (818)
++.|+||| ...+...+.|+. ...+ .....++++....+...+.+..+...+.+++..|++.+|+
T Consensus 344 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 423 (452)
T 1fmk_A 344 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423 (452)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence 89999999 222222233321 1111 1111122211111111111233455677888999999999
Q ss_pred CCCChHHHHHHHccCC
Q 003465 793 SVPTMQRVSQEFLKFP 808 (818)
Q Consensus 793 ~RP~m~~V~~~L~~~~ 808 (818)
+||+|.+|++.|+.+.
T Consensus 424 ~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 424 ERPTFEYLQAFLEDYF 439 (452)
T ss_dssp GSCCHHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHh
Confidence 9999999999999984
No 167
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.40 E-value=7.8e-14 Score=151.89 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=99.5
Q ss_pred hhhhhcccc----CcEEEEEcC-CCcEEEEEecccccc-chhhhhHhhh-------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRS-AFFKSFQNEA------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~-~~~~~f~~E~------------------------------- 691 (818)
+|.....+| |.||+|... +|+.||||....... ...++|.+|+
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 194 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELV 194 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcC
Confidence 344455666 899999974 789999997664422 2334677776
Q ss_pred -----------------------------------------cc---ccccccCCCCcccccccccceeccCCCC--Cccc
Q 003465 692 -----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~ 725 (818)
|+ |+|||+++++.+||+|||+++....... ....
T Consensus 195 ~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~ 274 (377)
T 3cbl_A 195 QGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGL 274 (377)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSC
T ss_pred CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCC
Confidence 22 8999999999999999999997543311 1122
Q ss_pred cccccceeCCC---CCCc-chHHHHhc----------ccCCC--ccc---cceecccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQ-EILSLFSS----------TSDPH--ITL---TYILDQRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~-~~l~~~~~----------~~~~~--~~~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
..++++|+||| .... ...+.|+. ...+. ... .+.+....... .+..+...+.+++..|
T Consensus 275 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~c 351 (377)
T 3cbl_A 275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLP---CPELCPDAVFRLMEQC 351 (377)
T ss_dssp CEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHH
T ss_pred CCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHH
Confidence 34678999999 1221 12233321 11111 111 11111111111 1223345667788899
Q ss_pred cCCCCCCCCChHHHHHHHccCC
Q 003465 787 LQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
|+.+|++||+|.+|++.|+++.
T Consensus 352 l~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 352 WAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCchhCcCHHHHHHHHHHHH
Confidence 9999999999999999998773
No 168
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.40 E-value=2.9e-13 Score=142.16 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=67.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCC--ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPH--ITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~--~~~~~ 758 (818)
|+|||++.++.+||+|||+++.............||++|+||| ..+.+ ..+.|+.. ..+. ....+
T Consensus 144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 223 (297)
T 3fxz_A 144 SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR 223 (297)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999998766555556678999999999 22222 33344321 1111 10000
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+........ ..+......+.+++..|++.||++||++.|+++
T Consensus 224 ~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 224 ALYLIATNGTPEL--QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHHHCSCCC--SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHhCCCCCC--CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000000000 112222344567788999999999999999986
No 169
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.40 E-value=5.6e-14 Score=152.60 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=59.9
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~ 754 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| +..+...+.|+. ...+. .
T Consensus 175 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~ 254 (373)
T 2qol_A 175 ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM 254 (373)
T ss_dssp GGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred cceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754422 122345678899999 222222233321 11111 1
Q ss_pred ccc---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLT---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
... +.++....... +..+...+.+++..|++.+|++||+|.+|+++|+++
T Consensus 255 ~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~ 307 (373)
T 2qol_A 255 SNQDVIKAVDEGYRLPP---PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307 (373)
T ss_dssp CHHHHHHHHHTTEECCC---CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCC---CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence 111 11112111111 223445677888999999999999999999999887
No 170
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.39 E-value=1.1e-13 Score=156.15 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=103.4
Q ss_pred hhhhhcccc----CcEEEEEcCC-CcEEEEEeccccccchhhhhHhhh--------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKH-GCLVAEYGSEQGRSAFFKSFQNEA-------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~-g~~vAvK~~~~~~~~~~~~f~~E~-------------------------------- 691 (818)
+|.....|| |.||+|.... +..||||.+..... ..++|.+|+
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~ 299 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 299 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccC
Confidence 344555666 8999999754 88999998765432 345677776
Q ss_pred -----------------------------------------cc---ccccccCCCCcccccccccceeccCCCC-Ccccc
Q 003465 692 -----------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLI 726 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~ 726 (818)
|+ |+|||+|+++.+||+|||+++....+.. .....
T Consensus 300 ~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~ 379 (495)
T 1opk_A 300 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 379 (495)
T ss_dssp TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTC
T ss_pred CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCC
Confidence 22 8999999999999999999998754321 22345
Q ss_pred ccccceeCCC---CCCcc-hHHHHhc----------c--cCCCccccc---eecccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 727 AGTYRYIAPA---KHPQE-ILSLFSS----------T--SDPHITLTY---ILDQRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 727 ~gt~gy~aPE---~~~~~-~l~~~~~----------~--~~~~~~~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
.|+++|+||| ..+.+ ..+.|+. . .+......+ .+........ +..+...+.+++..||
T Consensus 380 ~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl 456 (495)
T 1opk_A 380 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER---PEGCPEKVYELMRACW 456 (495)
T ss_dssp CCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHT
T ss_pred cCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHc
Confidence 6788999999 11111 2223321 1 111111112 2222222111 2334456778888999
Q ss_pred CCCCCCCCChHHHHHHHccCCC
Q 003465 788 QSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
+.+|++||+|.+|++.|+.+..
T Consensus 457 ~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 457 QWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp CSSGGGSCCHHHHHHHHHTSCS
T ss_pred CcChhHCcCHHHHHHHHHHHHh
Confidence 9999999999999999998843
No 171
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=6.8e-16 Score=151.80 Aligned_cols=132 Identities=25% Similarity=0.301 Sum_probs=77.6
Q ss_pred ccCCCcCceecccCcccccCCCC------CCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCC
Q 003465 121 IGALSKLQILDLSHNNLTGTIPS------KLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLG 194 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 194 (818)
+.....++.++++.+.+.+.+|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 56677888889988888877665 56666677777777776664 44 5666666666666666665 3444444
Q ss_pred CCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCC-CCCCCCCcceEEEccCCCC
Q 003465 195 HLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIA-STIGDLTNLNSLDLSSKQL 257 (818)
Q Consensus 195 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 257 (818)
.+++|++|++++|++++ +| .+.++++|++|++++|++++..+ ..+..+++|++|++++|.+
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 55566666666666554 22 34455555555555555543111 2333444444444444443
No 172
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.38 E-value=4.3e-14 Score=148.45 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=65.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcc---------cCCCcc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~~-- 755 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ...+...+.|+.. ..+...
T Consensus 142 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~ 221 (295)
T 3ugc_A 142 TRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP 221 (295)
T ss_dssp GGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH
T ss_pred HhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh
Confidence 8999999999999999999998754422 223456888999999 2222222333211 000000
Q ss_pred -------------------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 -------------------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 -------------------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.+...... +.+..+...+.+++..|++.+|++||++.||+++|+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~ 290 (295)
T 3ugc_A 222 AEFMRMIGNDKQGQMIVFHLIELLKNNGRL---PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290 (295)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHTTCCC---CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhcCccccchhHHHHHHHHhccCcC---CCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 00001111111 112233456777888999999999999999999999873
No 173
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.38 E-value=1.5e-13 Score=145.22 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=60.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+|||++.++.+||+|||+++.............||.+|+||| .. .+...+.|+. ...+ .....+
T Consensus 167 p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~ 246 (309)
T 3p86_A 167 SPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ 246 (309)
T ss_dssp GGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH
T ss_pred hhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 7899999999999999999987654433345678999999999 11 1222233321 1111 111111
Q ss_pred eeccc-CCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 759 ILDQR-ISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 759 ~~d~~-l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.... ........+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~ 296 (309)
T 3p86_A 247 VVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296 (309)
T ss_dssp HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11000 00000001112234566788899999999999999999999988
No 174
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.37 E-value=3.4e-13 Score=146.28 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=72.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHhc----------cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~--~~~~~ 755 (818)
|+|||+|+++.+||+|||+++...... .......||++|+||| ..+.+ ..+.|+. .. +....
T Consensus 231 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~ 310 (370)
T 2psq_A 231 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 310 (370)
T ss_dssp GGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 899999999999999999999775432 2234567889999999 22222 2333321 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++......+.....+..+...+.+++..|++.+|++||++.|+++.|+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i 362 (370)
T 2psq_A 311 VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362 (370)
T ss_dssp GGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1222111111111011223445677788899999999999999999999987
No 175
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.37 E-value=2.6e-13 Score=140.24 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=69.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+. ...
T Consensus 132 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 211 (268)
T 3sxs_A 132 ARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN 211 (268)
T ss_dssp GGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred cceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh
Confidence 8999999999999999999997754422 223456778899999 111112222321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
.+.............+......+.+++..|++.+|++||++.||++.|+.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 212 SEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 11111000000000011122346678889999999999999999999999854
No 176
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.37 E-value=1.6e-13 Score=142.03 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=69.6
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++...... .......||++|+||| ...+...+.|+. ...+. ...
T Consensus 134 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~ 213 (269)
T 4hcu_A 134 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN 213 (269)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH
Confidence 899999999999999999998764331 1233456788999999 222222233321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++............+......+.+++..|++.+|++||++.++++.|+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 214 SEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 1111110000000011112344667888999999999999999999999874
No 177
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3.5e-12 Score=121.60 Aligned_cols=84 Identities=32% Similarity=0.353 Sum_probs=33.4
Q ss_pred CCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEcc
Q 003465 150 NLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLS 229 (818)
Q Consensus 150 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 229 (818)
+|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34444444444443333334444444444444444443333333334444444444444433333333334444444444
Q ss_pred CCcC
Q 003465 230 GNKL 233 (818)
Q Consensus 230 ~n~l 233 (818)
+|.+
T Consensus 111 ~N~~ 114 (170)
T 3g39_A 111 NNPW 114 (170)
T ss_dssp SSCB
T ss_pred CCCC
Confidence 4433
No 178
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3.7e-12 Score=121.48 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=74.7
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+++++++|.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455566666553 454442 67777777777777666777777777777777777777666666777777777777777
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCCcc
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQINGC 212 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 212 (818)
.+++..+..|..+++|++|+|++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77766666677777888888888777643
No 179
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.36 E-value=2.6e-13 Score=151.25 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhc----------cc--CCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSS----------TS--DPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~----------~~--~~~~~~~ 757 (818)
|+|||+++++.+||+|||+++..... .....+++.|+||| .... ...+.|+. .. +......
T Consensus 317 p~Nill~~~~~~kl~DfG~a~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~ 393 (450)
T 1k9a_A 317 ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 393 (450)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT
T ss_pred HhhEEECCCCCEEEeeCCCccccccc---ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 89999999999999999999965322 22336789999999 2222 22233321 11 1111222
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+++.....+...+.+..+...+.+++..||+.+|++||+|.++++.|+.+.
T Consensus 394 ~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 394 DVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp THHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 222211111111123334556778888999999999999999999999874
No 180
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.36 E-value=1.2e-13 Score=147.30 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+|+....... ......||++|+||| ...+...+.|+. ...+ ...
T Consensus 145 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 224 (327)
T 3poz_A 145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp GGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred hheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC
Confidence 8999999999999999999998754432 234566789999999 222222233321 1111 111
Q ss_pred ---ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ---LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ---~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.+.+........ +..+...+.+++..|++.+|++||+|.||+++|+.+
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~ 276 (327)
T 3poz_A 225 ASEISSILEKGERLPQ---PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp GGGHHHHHHTTCCCCC---CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 1112222211111 233445677888999999999999999999999876
No 181
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.36 E-value=1.1e-12 Score=138.11 Aligned_cols=114 Identities=16% Similarity=0.268 Sum_probs=71.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC---CC------C-cchHHHHhc---------c-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA---KH------P-QEILSLFSS---------T- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE---~~------~-~~~l~~~~~---------~- 749 (818)
|+|||++.++++||+|||+|+........ .....||++|+||| .. + +...+.|+. .
T Consensus 141 p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~ 220 (301)
T 3q4u_A 141 SKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRM 220 (301)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred hHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhh
Confidence 89999999999999999999877544321 23457999999999 11 1 112333321 1
Q ss_pred ---------cCCCcc----------cccee-cccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 ---------SDPHIT----------LTYIL-DQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 ---------~~~~~~----------~~~~~-d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+... ....+ ......... .........+.+++..|++.+|++||+|.||+++|+++
T Consensus 221 ~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 221 VSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 000000 00000 000001110 01234556788899999999999999999999999865
No 182
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.35 E-value=3.1e-13 Score=144.19 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ..+ +...+.|+.. ..+..
T Consensus 155 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~ 234 (327)
T 3lxl_A 155 ARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS 234 (327)
T ss_dssp GGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc
Confidence 8999999999999999999998754432 234466899999999 111 1122223211 00000
Q ss_pred -----------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 -----------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 -----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...+.+........ +......+.+++..|++.+|++||++.||+++|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 302 (327)
T 3lxl_A 235 AEFLRMMGCERDVPALSRLLELLEEGQRLPA---PPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLW 302 (327)
T ss_dssp HHHHHHCC----CCHHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-
T ss_pred chhhhhcccccccccHHHHHHHhhcccCCCC---CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 00001111111111 2223345677888999999999999999999999883
No 183
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=6.2e-12 Score=120.30 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=45.6
Q ss_pred cEEEcCCCCCcccCCccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCC
Q 003465 104 ESFRIWYSNISGNIPSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSN 183 (818)
Q Consensus 104 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 183 (818)
+.++++++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455544443 3333332 44444555544444444444444444444444444444333333344444444444444
Q ss_pred CCCCCCccCCCCCCCCcEEEcccCcCC
Q 003465 184 SLVGPIPFTLGHLTQLTTLKLFSNQIN 210 (818)
Q Consensus 184 ~l~~~~~~~l~~l~~L~~L~L~~n~l~ 210 (818)
.+++..+..+..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444333323444444444444444433
No 184
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.34 E-value=4.1e-13 Score=142.88 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=72.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--CC------Ccc-hHHHHhc---------ccCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH------PQE-ILSLFSS---------TSDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~------~~~-~l~~~~~---------~~~~~ 753 (818)
|+|||+++++.+||+|||+|+....... .....+||++|+||| .. +.. ..+.|+. ...+.
T Consensus 159 p~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf 238 (322)
T 3soc_A 159 SKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAA 238 (322)
T ss_dssp GGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTS
T ss_pred hHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999998754432 234568999999999 11 111 2233431 11110
Q ss_pred -c-----------------cccce----ecccCCCcCcc--chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 754 -I-----------------TLTYI----LDQRISPPKKQ--KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 754 -~-----------------~~~~~----~d~~l~~~~~~--~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+ ...++ ......+.... ....+...+.+++..|++.||++||++.||+++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~ 317 (322)
T 3soc_A 239 DGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 317 (322)
T ss_dssp SSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0 00000 00111111100 11234556888999999999999999999999999874
No 185
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.34 E-value=3.6e-13 Score=143.34 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc--chHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ--EILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~-----------~~~~~~~~ 757 (818)
|+|||+|.++.+||+|||+++...... .....+||++|+||| ..+. ...+.|+.. .+......
T Consensus 142 p~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~ 220 (328)
T 3fe3_A 142 AENLLLDADMNIKIADFGFSNEFTVGG-KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK 220 (328)
T ss_dssp GGGEEECTTSCEEECSTTCCGGGSSSC-GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred HHHEEEcCCCCEEEeeccCceecCCCC-ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH
Confidence 899999999999999999998765432 345568999999999 2221 234445321 11111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
++.+....+.. ..+......+.++...|++.||++|||+.|+++.
T Consensus 221 ~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 221 ELRERVLRGKY-RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp HHHHHHHHCCC-CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred HHHHHHHhCCC-CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 11111111110 0011122345567789999999999999999753
No 186
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=6.2e-12 Score=120.28 Aligned_cols=105 Identities=25% Similarity=0.358 Sum_probs=76.1
Q ss_pred ceecccCcccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 128 QILDLSHNNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 128 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 66777777776 5565553 67777777777777666777777777777777777777655555677777777777777
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKLNG 235 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 235 (818)
++++..+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7776555557777777777777777653
No 187
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.34 E-value=7.4e-13 Score=140.07 Aligned_cols=43 Identities=30% Similarity=0.341 Sum_probs=35.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 147 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 189 (311)
T 3niz_A 147 PQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPD 189 (311)
T ss_dssp GGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHH
T ss_pred hHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHH
Confidence 8999999999999999999998765544455667999999999
No 188
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.33 E-value=1.6e-12 Score=136.20 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=37.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 129 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 171 (292)
T 3o0g_A 129 PQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPD 171 (292)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChH
Confidence 8999999999999999999998765544455678999999999
No 189
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.32 E-value=4.7e-13 Score=152.48 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=101.9
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....|| |.||+|...++..||||.+..... ..++|.+|+
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~g 346 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 346 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTE
T ss_pred hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCC
Confidence 344455666 899999988788899997765432 335577776
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCcccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~g 728 (818)
|+ ++|||+++++.+||+|||+++...... .......|
T Consensus 347 sL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~ 426 (535)
T 2h8h_A 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 426 (535)
T ss_dssp EHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTS
T ss_pred cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcC
Confidence 22 899999999999999999998764321 11234567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCC--CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDP--HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPK 792 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~ 792 (818)
+..|+||| ...+...+.|+. ...+ .....++++....+...+.+..+...+.+++..||+.+|+
T Consensus 427 ~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 506 (535)
T 2h8h_A 427 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 506 (535)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred cccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 88999999 222222333321 1111 1111122211111111011223445677888899999999
Q ss_pred CCCChHHHHHHHccCC
Q 003465 793 SVPTMQRVSQEFLKFP 808 (818)
Q Consensus 793 ~RP~m~~V~~~L~~~~ 808 (818)
+||+|.+|++.|+.+-
T Consensus 507 ~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 507 ERPTFEYLQAFLEDYF 522 (535)
T ss_dssp GSCCHHHHHHHHHTSS
T ss_pred HCcCHHHHHHHHHHHh
Confidence 9999999999999983
No 190
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.32 E-value=5.3e-13 Score=154.30 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------cc--CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~~ 754 (818)
|+|||+|+++.+||+|||+|+.+..+.. ......||++|+||| ...+...+.|+. .. +...
T Consensus 464 p~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 543 (613)
T 2ozo_A 464 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 543 (613)
T ss_dssp GGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred HHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 8999999999999999999997754322 122345678999999 222222333321 11 1111
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++.+....+.....+..+...+.+++..||+.+|++||+|.+|++.|+.+
T Consensus 544 ~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 544 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp CSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 11122211111111112333456677889999999999999999999999987
No 191
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.31 E-value=6.6e-13 Score=143.89 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.2
Q ss_pred ccccccCCC---CcccccccccceeccCC--CCCccccccccceeCCC----CCCcchHHHHhc----------ccCC--
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~-- 752 (818)
|+|||++.+ ..+||+|||+|+..... ........||++|+||| ...+...+.|+. ...+
T Consensus 209 p~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~ 288 (367)
T 3l9p_A 209 ARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP 288 (367)
T ss_dssp GGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred hhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 899999954 45999999999866332 22234567899999999 222223333431 1111
Q ss_pred CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....++.+....+.....+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 289 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~ 343 (367)
T 3l9p_A 289 SKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343 (367)
T ss_dssp TCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 1111111111111110011222334567788899999999999999999999877
No 192
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.31 E-value=5.6e-13 Score=138.95 Aligned_cols=155 Identities=18% Similarity=0.117 Sum_probs=98.3
Q ss_pred hhhhhcccc----CcEEEEEcCCCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 649 DLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 649 ~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
+|.....+| |.||+|...++..||||....... ..++|.+|+
T Consensus 25 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 103 (283)
T 3gen_A 25 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 103 (283)
T ss_dssp GEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTT
T ss_pred HHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCC
Confidence 344455666 899999988888999997765432 234566665
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCC-CCcccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAG 728 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~g 728 (818)
|+ |+||++++++.+||+|||+++...... .......|
T Consensus 104 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 183 (283)
T 3gen_A 104 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF 183 (283)
T ss_dssp CBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTS
T ss_pred CcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCcc
Confidence 22 899999999999999999998764321 12234567
Q ss_pred ccceeCCC----CCCcchHHHHhc----------ccCCCc--ccc---ceecccCCCcCccchHHHHHHHHHHHHhccCC
Q 003465 729 TYRYIAPA----KHPQEILSLFSS----------TSDPHI--TLT---YILDQRISPPKKQKIVQDIALASIVALACLQS 789 (818)
Q Consensus 729 t~gy~aPE----~~~~~~l~~~~~----------~~~~~~--~~~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~ 789 (818)
|++|+||| ...+...+.|+. ...+.. ... +.+........ +......+.+++..|++.
T Consensus 184 ~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~ 260 (283)
T 3gen_A 184 PVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYR---PHLASEKVYTIMYSCWHE 260 (283)
T ss_dssp CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHTTCS
T ss_pred CcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCC---CCcCCHHHHHHHHHHccC
Confidence 88999999 222222233321 111111 100 11111111111 111234566788899999
Q ss_pred CCCCCCChHHHHHHHccC
Q 003465 790 KPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 790 ~p~~RP~m~~V~~~L~~~ 807 (818)
+|++||++.++++.|+++
T Consensus 261 ~p~~Rps~~~ll~~L~~~ 278 (283)
T 3gen_A 261 KADERPTFKILLSNILDV 278 (283)
T ss_dssp SGGGSCCHHHHHHHHHHH
T ss_pred ChhHCcCHHHHHHHHHHH
Confidence 999999999999999876
No 193
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.31 E-value=7.4e-13 Score=151.18 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=98.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
++|.....|| |.||+|.. .+|+.||||.+........+.+.+|+
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 3455556677 89999985 56999999976554433445566666
Q ss_pred -----------------------------------------cc---ccccccCCC--CcccccccccceeccCCCCCccc
Q 003465 692 -----------------------------------------HV---FNNILLNSE--FEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~~--~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||++.+ +.+||+|||+|+.+.... ....
T Consensus 237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-~~~~ 315 (573)
T 3uto_A 237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-SVKV 315 (573)
T ss_dssp CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-EEEE
T ss_pred CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-ceee
Confidence 22 899999865 789999999999875443 3345
Q ss_pred cccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccceec----ccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTYILD----QRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
.+||+.||||| ..+++ ..+.|+.. .+......+++. ....... ......-..+.++...|
T Consensus 316 ~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~dli~~~ 394 (573)
T 3uto_A 316 TTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDD-SAFSGISEDGKDFIRKL 394 (573)
T ss_dssp ECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCS-GGGTTSCHHHHHHHHTT
T ss_pred eEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHH
Confidence 68999999999 44444 45556421 111111111111 1111111 11111123445677799
Q ss_pred cCCCCCCCCChHHHHH
Q 003465 787 LQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~ 802 (818)
++.||++||++.|+++
T Consensus 395 L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 395 LLADPNTRMTIHQALE 410 (573)
T ss_dssp SCSSGGGSCCHHHHHH
T ss_pred ccCChhHCcCHHHHhc
Confidence 9999999999999886
No 194
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=143.24 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC---CCC--cchHHHHhcc---------c--CCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA---KHP--QEILSLFSST---------S--DPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE---~~~--~~~l~~~~~~---------~--~~~~~~ 756 (818)
|+|||+|+++.+||+|||+++...... ......+||++|+||| ..+ +...+.|+.. . +.....
T Consensus 136 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~ 215 (347)
T 3zgw_A 136 PENLLFDEYHKLKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV 215 (347)
T ss_dssp GGGEEECTTSCEEECCCTTCBC--------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEcCCCCEEEEeccCcccccCCCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH
Confidence 899999999999999999998764432 2345568999999999 222 2234445321 1 111111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++......+.. ..+......+.++...|++.||++|||+.|+++
T Consensus 216 ~~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 216 MALYKKIMRGKY-DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp HHHHHHHHHTCC-CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCC-CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 111111111110 001111233456778999999999999999985
No 195
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.31 E-value=6.8e-13 Score=143.89 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=61.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC----CCCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~ 753 (818)
|+|||+|+++.+||+|||+++....... ..+...||++|+||| ...+...+.|+. .. +..
T Consensus 220 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~ 299 (373)
T 3c1x_A 220 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 299 (373)
T ss_dssp GGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred hheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 8999999999999999999987643321 224566889999999 222222333321 11 111
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++......+.....+..+...+.+++..||+.+|++||++.||++.|+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i 353 (373)
T 3c1x_A 300 VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353 (373)
T ss_dssp SCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111111111111111011222344577788899999999999999999999987
No 196
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.31 E-value=6e-13 Score=141.80 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++....... ..+...||.+|+||| ...+...+.|+. ...+ ...
T Consensus 143 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~ 222 (325)
T 3kex_A 143 ARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR 222 (325)
T ss_dssp STTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred hheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence 8999999999999999999998754432 235667889999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..++.+..........+..+...+.+++..|++.+|++||+|.+|++.|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 223 LAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp TTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 11111110000000011122334567888999999999999999999998873
No 197
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.31 E-value=7.9e-13 Score=140.73 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+++++.+||+|||+|+....... ......||++|+||| ...+...+.|+. ...+ ...
T Consensus 165 p~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 244 (323)
T 3qup_A 165 ARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE 244 (323)
T ss_dssp GGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred cceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC
Confidence 8999999999999999999987654322 223456788999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++............+......+.+++..|++.+|++||++.++++.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 245 NAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp GGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1122111111111011223344567788899999999999999999999987
No 198
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.31 E-value=4.9e-13 Score=155.02 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~ 754 (818)
|+|||+|+++.+||+|||+|+.+..+.. ..+...||++|+||| ...+...+.|+. ...+ ..
T Consensus 497 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 576 (635)
T 4fl3_A 497 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 576 (635)
T ss_dssp GGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred hHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999998754422 234556789999999 222223333321 1111 11
Q ss_pred cccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++ +....... .+..+...+.+++..||+.+|++||+|.+|+++|+.+
T Consensus 577 ~~~~~~~~i~~~~~~~---~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 577 KGSEVTAMLEKGERMG---CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp CHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 11111 11111111 1233445677888899999999999999999999865
No 199
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.30 E-value=7e-13 Score=139.65 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=69.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhccc---------CCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSSTS---------DPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~~---------~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ..+ +...+.|+... .+..
T Consensus 154 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 233 (302)
T 4e5w_A 154 ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM 233 (302)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh
Confidence 8999999999999999999998765432 234567899999999 111 11222332110 0000
Q ss_pred --------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 --------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 --------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....+..........+.+......+.+++..|++.+|++||++.+|+++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 234 ALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred hHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 00000000000000001122234567788899999999999999999999864
No 200
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.30 E-value=8.7e-13 Score=143.87 Aligned_cols=114 Identities=14% Similarity=0.219 Sum_probs=71.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCC-cchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+++++.+||+|||+|+...... .......||++|+||| ... +...+.|+. ...+ ...
T Consensus 219 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~ 298 (382)
T 3tt0_A 219 ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP 298 (382)
T ss_dssp GGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 899999999999999999999775432 2344567899999999 222 222333321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+..........+......+.+++..|++.+|++||+|.||++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 350 (382)
T 3tt0_A 299 VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350 (382)
T ss_dssp HHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1111111111100011222334567788899999999999999999999988
No 201
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.30 E-value=2.7e-12 Score=137.13 Aligned_cols=104 Identities=23% Similarity=0.338 Sum_probs=68.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-c-hHHHHhc---------ccCCCccccce
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-E-ILSLFSS---------TSDPHITLTYI 759 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~-~l~~~~~---------~~~~~~~~~~~ 759 (818)
|+|||++.++.+||+|||+++....... ....+||++|+||| ..+. . ..+.|+. ...+.....+.
T Consensus 158 p~NIll~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 236 (335)
T 3dls_A 158 DENIVIAEDFTIKLIDFGSAAYLERGKL-FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET 236 (335)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTCC-BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG
T ss_pred HHHEEEcCCCcEEEeecccceECCCCCc-eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH
Confidence 8999999999999999999998754432 34567999999999 2222 2 2334431 22222222333
Q ss_pred ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 760 LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 760 ~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
......... .....+.+++..|++.+|++||++.++++.
T Consensus 237 ~~~~~~~~~-----~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 VEAAIHPPY-----LVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp TTTCCCCSS-----CCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HhhccCCCc-----ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 333332221 122345667779999999999999999874
No 202
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.30 E-value=1.2e-12 Score=136.75 Aligned_cols=43 Identities=33% Similarity=0.342 Sum_probs=31.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.........+...||.+|+|||
T Consensus 128 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 170 (288)
T 1ob3_A 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPD 170 (288)
T ss_dssp GGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHH
T ss_pred HHHEEEcCCCCEEEeECccccccCccccccccccccccccCch
Confidence 8999999999999999999987754433344567999999999
No 203
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.30 E-value=5.9e-13 Score=151.08 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---C-CCcc-hHHHHhcc---------cCCC--cc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HPQE-ILSLFSST---------SDPH--IT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~~~-~l~~~~~~---------~~~~--~~-- 755 (818)
|+|||||+++++||+|||+|+.+.... +...+||+.||||| + .+++ ..+.|+.+ ..+. ..
T Consensus 320 PeNILld~~G~vKL~DFGlA~~~~~~~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~ 397 (689)
T 3v5w_A 320 PANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK 397 (689)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSCC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred hHHeEEeCCCCEEecccceeeecCCCC--CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence 899999999999999999999875433 34568999999999 2 3444 55666532 1111 11
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHH
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVS 801 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~ 801 (818)
..++....+.... ..+...-..+.++...|++.||++|++ +.||.
T Consensus 398 ~~~~i~~~i~~~~~-~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 398 DKHEIDRMTLTMAV-ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred HHHHHHHhhcCCCC-CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 1111111111100 001111223456777999999999998 56665
No 204
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.30 E-value=1.6e-12 Score=138.62 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc-c-hHHHHhc---------c--cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-E-ILSLFSS---------T--SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~-~l~~~~~---------~--~~~~~~~~ 757 (818)
|+|||+|+++.+||+|||+++...... .....+||++|+||| ..+. + ..+.|+. . .+......
T Consensus 136 p~NIll~~~~~~kl~DFG~s~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~ 214 (336)
T 3h4j_B 136 PENLLLDDNLNVKIADFGLSNIMTDGN-FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP 214 (336)
T ss_dssp TTTEEECTTCCEEECCSSCTBTTTTSB-TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST
T ss_pred hhhEEEcCCCCEEEEEeccceeccCCc-ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH
Confidence 899999999999999999998765432 234567999999999 2221 1 3344431 1 11112122
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......... ..+......+.+++..|++.||++|||+.|+++
T Consensus 215 ~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 215 NLFKKVNSCVY-VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp TCBCCCCSSCC-CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCC-CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 22221111111 111112234556778999999999999999975
No 205
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.30 E-value=1.3e-12 Score=139.60 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 133 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 212 (337)
T 1o6l_A 133 LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 212 (337)
T ss_dssp GGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 22222 33444321 111 111111
Q ss_pred e----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 I----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+ ....+.. +......+.++...|++.+|++|| ++.||++
T Consensus 213 ~~~~i~~~~~~~-----p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 213 LFELILMEEIRF-----PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHCCCCC-----CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHcCCCCC-----CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 1 1111111 111123455677799999999999 8888864
No 206
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.29 E-value=9.8e-13 Score=136.97 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=59.7
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+|||++.++.+||+|||+++....... ......||++|+||| ...+...+.|+. ...+ ....
T Consensus 144 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~ 223 (281)
T 1mp8_A 144 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 223 (281)
T ss_dssp GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG
T ss_pred HHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH
Confidence 8999999999999999999997754322 234456788999999 222222233321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.........+.+......+.+++..|++.+|++||++.||++.|+++
T Consensus 224 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 224 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111111100011222344566788899999999999999999999876
No 207
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.29 E-value=7.9e-13 Score=138.72 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred cccccc---CCCCcccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------cc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TS 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~ 750 (818)
|+|||+ ++++.+||+|||+++....... ......||.+|+||| ..+.+ ..+.|+. ..
T Consensus 133 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~ 212 (296)
T 4hgt_A 133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 212 (296)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCC
Confidence 899999 8999999999999998754422 224568999999999 22222 2333431 11
Q ss_pred CCCccc-----cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL-----TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~-----~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... .+. ....+..............+.+++..|++.+|++||++.+|++.|+++
T Consensus 213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~ 278 (296)
T 4hgt_A 213 LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp CTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 111100 000 000110000000011134577888899999999999999999999987
No 208
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.28 E-value=1e-12 Score=141.19 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||+|+++.+||+|||+++...... .......||++|+||| ...+...+.|+. ...+ ...
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 281 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 281 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC
Confidence 789999999999999999998764332 2234567899999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
..++......+.....+......+.+++..|++.+|++||++.+|++.|+++....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 282 HEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred hHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 11111111111100112223345677888999999999999999999999985443
No 209
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.28 E-value=8.9e-13 Score=136.07 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=69.3
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||++|+++.+||+|||+++...... .......||..|+||| ...+...+.|+. ...+. ...
T Consensus 132 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~ 211 (267)
T 3t9t_A 132 ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN 211 (267)
T ss_dssp GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH
Confidence 899999999999999999998764321 1223456788999999 222222233321 11111 111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++............+......+.+++..|++.+|++||++.++++.|+++.
T Consensus 212 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 212 SEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp HHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 1111110000000011112345667888999999999999999999999874
No 210
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.28 E-value=7.4e-13 Score=137.74 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=69.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCCcc-hHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~--~~~~ 756 (818)
|+||++|+++.+||+|||+++....... ......||..|+||| ..+.+ ..+.|+. ...+ ....
T Consensus 137 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~ 216 (279)
T 1qpc_A 137 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN 216 (279)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH
T ss_pred HhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH
Confidence 8999999999999999999998754322 223456788999999 12211 2222321 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 267 (279)
T 1qpc_A 217 PEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267 (279)
T ss_dssp HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 111111000000001122234566788899999999999999999999887
No 211
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.28 E-value=8.4e-13 Score=138.58 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=70.4
Q ss_pred cccccc---CCCCcccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------cc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TS 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~ 750 (818)
|+|||+ ++++.+||+|||+++....... ......||.+|+||| ..+ +...+.|+. ..
T Consensus 133 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~ 212 (296)
T 3uzp_A 133 PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS 212 (296)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCC
Confidence 899999 5899999999999998755432 124568999999999 222 223333431 11
Q ss_pred CCCccc-----c----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL-----T----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~-----~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... . .+....+..............+.+++..|++.+|++||++.+|++.|+++
T Consensus 213 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 278 (296)
T 3uzp_A 213 LPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 278 (296)
T ss_dssp CTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred CCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence 111100 0 01111111000000011234577788899999999999999999999987
No 212
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.28 E-value=4.1e-12 Score=132.66 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=67.9
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCCCccccccccceeCCCCC-----Cc-chHHHHhc---------ccCC-
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH-----PQ-EILSLFSS---------TSDP- 752 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~-----~~-~~l~~~~~---------~~~~- 752 (818)
|+|||++.+.. +||+|||+++.... ......||+.|+|||.. +. ...+.|+. ...+
T Consensus 152 p~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf 228 (287)
T 4f0f_A 152 SPNIFLQSLDENAPVCAKVADFGLSQQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPF 228 (287)
T ss_dssp GGGEEESCCCTTCSCCEEECCCTTCBCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cceEEEeccCCCCceeEEeCCCCccccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCC
Confidence 78999988776 99999999985432 23456799999999921 11 12333431 1111
Q ss_pred -Ccccc------ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 -HITLT------YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 -~~~~~------~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..... .+......... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 229 DEYSYGKIKFINMIREEGLRPTI---PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp TTCCCCHHHHHHHHHHSCCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHhccCCCCCC---CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 11111 11111221111 222334567788899999999999999999999864
No 213
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.28 E-value=1.4e-12 Score=137.06 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~--------- 748 (818)
|+|||++.++. +||+|||+++....... ......||.+|+||| ..+ +...+.|+.
T Consensus 134 p~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 213 (298)
T 1csn_A 134 PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLR 213 (298)
T ss_dssp GGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHc
Confidence 89999988876 99999999998754422 234677999999999 222 222333331
Q ss_pred ccCCCcccc-----c----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 TSDPHITLT-----Y----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ~~~~~~~~~-----~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+..... + +...................+.+++..|++.+|++||++.+|++.|+++
T Consensus 214 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~ 281 (298)
T 1csn_A 214 GSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV 281 (298)
T ss_dssp SSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence 111111000 0 0000000000000011234577888899999999999999999999987
No 214
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=136.40 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CC----cchHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HP----QEILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~----~~~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++.............||++|+|||. .+ ....+.|+. ...+ ...
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 89999999999999999999987654444456689999999991 11 112334432 1111 111
Q ss_pred ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... +......... .......+.+++..|++.+|++||++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 245 IMCLHSKIKSQALEFPD---QPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHHHHHHHCCCCCCS---SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHhcccCCCCC---ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 111 1111111111 1112234567778999999999999999864
No 215
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.27 E-value=5.8e-12 Score=134.80 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=71.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCC----ccccccccceeCCC---CC---Cc-c---hHHHHhccc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN----RTLIAGTYRYIAPA---KH---PQ-E---ILSLFSSTS--------- 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~----~~~~~gt~gy~aPE---~~---~~-~---~l~~~~~~~--------- 750 (818)
|+|||++.++++||+|||+|+........ .....||.+|+||| .. +. . ..+.|+...
T Consensus 170 p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~ 249 (337)
T 3mdy_A 170 SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRC 249 (337)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTB
T ss_pred hHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhcc
Confidence 89999999999999999999877543221 23567999999999 11 11 0 123343110
Q ss_pred ----------CCCcc----------cccee-cccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 ----------DPHIT----------LTYIL-DQRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ----------~~~~~----------~~~~~-d~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+... ..+.+ ...+..... ....++...+.+++..|++.+|++||++.||++.|+++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 329 (337)
T 3mdy_A 250 VSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKM 329 (337)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred CcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHH
Confidence 00000 00000 011111110 01225667788999999999999999999999999987
Q ss_pred CC
Q 003465 808 PY 809 (818)
Q Consensus 808 ~~ 809 (818)
..
T Consensus 330 ~~ 331 (337)
T 3mdy_A 330 SE 331 (337)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 216
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=138.59 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC------------ccccccccceeCCCCC------C-cchHHHHhc------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN------------RTLIAGTYRYIAPAKH------P-QEILSLFSS------ 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~------------~~~~~gt~gy~aPE~~------~-~~~l~~~~~------ 748 (818)
|+|||++.++.+||+|||+++........ .....||++|+|||.. + +...+.|+.
T Consensus 166 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~e 245 (337)
T 3ll6_A 166 VENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYL 245 (337)
T ss_dssp GGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHH
T ss_pred cccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHH
Confidence 88999999999999999999877543211 1245699999999921 1 112333321
Q ss_pred -----ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 -----TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 -----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+......++++....... .......+.+++..|++.+|++||++.||++.|+.+
T Consensus 246 l~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~ 306 (337)
T 3ll6_A 246 LCFRQHPFEDGAKLRIVNGKYSIPP---HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEI 306 (337)
T ss_dssp HHHSSCCC------------CCCCT---TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred HHhCCCCCcchhHHHhhcCcccCCc---ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11112222233333332221 111122355677899999999999999999999988
No 217
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.27 E-value=3.8e-12 Score=136.81 Aligned_cols=43 Identities=30% Similarity=0.326 Sum_probs=37.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.+.......+..+||.+|+|||
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 182 (346)
T 1ua2_A 140 PNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE 182 (346)
T ss_dssp GGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHH
T ss_pred HHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCch
Confidence 8999999999999999999998755444455678999999999
No 218
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.27 E-value=2e-12 Score=138.22 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~~----------~~~~~--~ 754 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+. ...+. .
T Consensus 175 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~ 254 (333)
T 1mqb_A 175 ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL 254 (333)
T ss_dssp GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999997754322 223455788999999 22222 2233321 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+...+.+......+.+++..|++.+|++||+|.+|++.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~ 307 (333)
T 1mqb_A 255 SNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307 (333)
T ss_dssp CHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111111100011223344567788899999999999999999999887
No 219
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.27 E-value=2e-12 Score=135.09 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=70.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHh---------c-ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFS---------S-TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~-~~~~--~~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ...+...+.|+ . ...+ ....
T Consensus 139 p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~ 218 (288)
T 3kfa_A 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL 218 (288)
T ss_dssp GGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred cceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 8999999999999999999987654432 234556788999999 22222222332 1 1111 1111
Q ss_pred c---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 T---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. +.+........ +......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 219 ~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 219 SQVYELLEKDYRMER---PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp GGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCC---CCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 1 11112211111 222334567788899999999999999999999876
No 220
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.26 E-value=2.2e-12 Score=144.19 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=70.2
Q ss_pred cccccc---CCCCcccccccccceeccCCCCC-------ccccccccceeCCC---CCCcc-hHHHHhcc---------c
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSN-------RTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S 750 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~-------~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~ 750 (818)
|+|||+ |.++.+||+|||+++........ .....||.+|+||| ..+.+ ..+.|+.. .
T Consensus 131 P~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~ 210 (483)
T 3sv0_A 131 PDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGS 210 (483)
T ss_dssp GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 899999 68999999999999987544221 23678999999999 22222 23334321 1
Q ss_pred CCCccc---------cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 751 DPHITL---------TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 751 ~~~~~~---------~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+.... ..+.+..+..............+.+++..|++.+|++||+|.+|++.|+++
T Consensus 211 ~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 211 LPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp CTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 111100 000111110000000011234577888999999999999999999999887
No 221
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=133.91 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=50.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---CCcc-hHHHHh---------cc--cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---HPQE-ILSLFS---------ST--SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---~~~~-~l~~~~---------~~--~~~~~~~~~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+|||. .+.. ..+.|+ .. .+......+
T Consensus 140 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 219 (278)
T 3cok_A 140 LSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN 219 (278)
T ss_dssp GGGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-
T ss_pred HHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH
Confidence 89999999999999999999987544333345679999999991 1111 112222 11 111111222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+........ ..+......+.+++..|++.+|++||++.+|++
T Consensus 220 ~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 220 TLNKVVLADY-EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ----CCSSCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHhhccc-CCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 2222111111 111112334567888999999999999999986
No 222
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.26 E-value=2.8e-12 Score=133.25 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc----------ccC--CCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSD--PHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~--~~~~~~ 757 (818)
|+||++++++.+||+|||+++..... .....|+.+|+||| .......+.|+. ... ......
T Consensus 145 p~Nil~~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~ 221 (278)
T 1byg_A 145 ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK 221 (278)
T ss_dssp GGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG
T ss_pred cceEEEeCCCcEEEeecccccccccc---ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 89999999999999999999865432 22346789999999 222222223321 111 111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
++......+.....+......+.+++..|++.+|++||++.|+++.|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 222 DVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp GHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 221111111000112223445667888999999999999999999999874
No 223
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.26 E-value=2.4e-12 Score=135.28 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=68.6
Q ss_pred ccccccCCCCcccccccccceeccCCC----CCccccccccceeCCC----CCCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS----SNRTLIAGTYRYIAPA----KHPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~----~~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~--~~~ 753 (818)
|+||++++++.+||+|||+++...... ...+...||++|+||| ...+...+.|+. .. +..
T Consensus 156 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~ 235 (298)
T 3f66_A 156 ARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 235 (298)
T ss_dssp GGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 899999999999999999998764332 1234567889999999 222222233321 11 111
Q ss_pred ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++............+......+.+++..|++.+|++||++.|++++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~ 289 (298)
T 3f66_A 236 VNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289 (298)
T ss_dssp SCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111111111111110001112234567788899999999999999999999987
No 224
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.26 E-value=1.7e-12 Score=134.28 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred ccccccCC--------CCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCC
Q 003465 694 FNNILLNS--------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP 752 (818)
Q Consensus 694 ~~NILLd~--------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~ 752 (818)
|+|||++. ++.+||+|||+++...... .....||.+|+||| ...+...+.|+. ...+
T Consensus 136 p~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p 213 (271)
T 3dtc_A 136 SSNILILQKVENGDLSNKILKITDFGLAREWHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213 (271)
T ss_dssp GGGEEESSCCSSSCCSSCCEEECCCCC---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCT
T ss_pred hHHEEEecccccccccCcceEEccCCccccccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 79999996 7789999999998764332 23457999999999 222222333321 1111
Q ss_pred Cc--cc----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HI--TL----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~--~~----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.. .. ..+......... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 214 FRGIDGLAVAYGVAMNKLALPI---PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp TTTSCHHHHHHHHHTSCCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHhhhcCCCCCCC---CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11 00 001111111111 222334567788899999999999999999999864
No 225
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.26 E-value=2.6e-12 Score=137.21 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=69.3
Q ss_pred ccccccCCCCc-----ccccccccceeccCCCC-------CccccccccceeCCC---CCCcc-hHHHHhc---------
Q 003465 694 FNNILLNSEFE-----AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~-----~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~~~-~l~~~~~--------- 748 (818)
|+|||++.++. +||+|||+|+....... .....+||++|+||| ..+.+ ..+.|+.
T Consensus 133 p~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~ 212 (330)
T 2izr_A 133 PENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLR 212 (330)
T ss_dssp GGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhc
Confidence 89999999988 99999999998754322 124678999999999 22222 2333431
Q ss_pred ccCCCc--cccce---ecccCCCcCccchHH-----HHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 749 TSDPHI--TLTYI---LDQRISPPKKQKIVQ-----DIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 749 ~~~~~~--~~~~~---~d~~l~~~~~~~~~~-----~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+.. ...++ +........ ..+.+ .. .+.+++..|++.+|.+||++.+|++.|+++
T Consensus 213 g~~Pf~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 213 GSLPWQGLKADTLKERYQKIGDTKR-ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp SSCTTTTCCCSSHHHHHHHHHHHHH-HSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCccccccccHHHHHHHHHhhhc-cCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 111111 00000 000000000 00111 12 677888899999999999999999999866
No 226
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=136.65 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=69.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~~~--- 754 (818)
|+||++++++.+||+|||+++....... ......|+..|+||| ..+ +...+.|+.. ..+..
T Consensus 173 p~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~ 252 (326)
T 2w1i_A 173 TRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP 252 (326)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH
T ss_pred cceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH
Confidence 8999999999999999999998755432 123456888999999 111 1122223211 00000
Q ss_pred ------------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 755 ------------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 755 ------------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.+.+.+....... .+......+.+++..|++.+|++||++.||++.|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 253 AEFMRMIGNDKQGQMIVFHLIELLKNNGRLP---RPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhHHHHHHHhhcCCCCC---CCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0001111111111 12223455677888999999999999999999998763
No 227
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.26 E-value=1.9e-12 Score=134.84 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=67.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~~ 756 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| .......+.|+. ...+. ...
T Consensus 141 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~ 220 (281)
T 3cc6_A 141 VRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN 220 (281)
T ss_dssp GGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG
T ss_pred cceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh
Confidence 8999999999999999999987654322 234556889999999 222222223321 11111 111
Q ss_pred ccee---cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 757 TYIL---DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 757 ~~~~---d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.++. ........ +......+.+++..|++.+|++||++.||++.|+.+.
T Consensus 221 ~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 221 KDVIGVLEKGDRLPK---PDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp GGHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 1111 11111111 1122345667888999999999999999999998773
No 228
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.26 E-value=1.1e-12 Score=139.31 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=69.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC----CCCcchHHHHhcc---------cCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA----KHPQEILSLFSST---------SDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE----~~~~~~l~~~~~~---------~~~~~--- 754 (818)
|+|||++.++.+||+|||+++....... ......||..|+||| ...+...+.|+.. ..+..
T Consensus 162 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~ 241 (318)
T 3lxp_A 162 ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP 241 (318)
T ss_dssp GGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH
T ss_pred hheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccc
Confidence 8999999999999999999998754432 234566889999999 1111122333211 11000
Q ss_pred -----------------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 -----------------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 -----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+.++....... +......+.+++..|++.+|++||++.||++.|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l 308 (318)
T 3lxp_A 242 TKFLELIGIAQGQMTVLRLTELLERGERLPR---PDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308 (318)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhhhhhhcccccchhHHHHHHHHhcccCCCC---CccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 00111111111111 222334567788899999999999999999999987
No 229
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=140.47 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred Hhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh----------------------------
Q 003465 647 TEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 647 t~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~---------------------------- 691 (818)
.++|.....+| |.||+|.. .+|+.||+|.+.... ....+.+.+|+
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~ 89 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF 89 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence 45566666777 99999984 579999999654432 22334566776
Q ss_pred -------------------------------------------cc---ccccccC---CCCcccccccccceeccCCCCC
Q 003465 692 -------------------------------------------HV---FNNILLN---SEFEAFFGNFGVARLLNSDSSN 722 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd---~~~~~ki~DFGla~~~~~~~~~ 722 (818)
|+ |+|||++ .++.+||+|||+|+........
T Consensus 90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~ 169 (444)
T 3soa_A 90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA 169 (444)
T ss_dssp CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB
T ss_pred EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce
Confidence 22 8999999 4678999999999887655544
Q ss_pred ccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc----eecccCCCcCccchHHHHHHHHHHH
Q 003465 723 RTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY----ILDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 723 ~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
....+||++|+||| ..+.+ ..+.|+. ...+ .....+ +......... +........+.+++
T Consensus 170 ~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li 248 (444)
T 3soa_A 170 WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPS-PEWDTVTPEAKDLI 248 (444)
T ss_dssp CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHH
T ss_pred eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCc-cccccCCHHHHHHH
Confidence 56678999999999 22222 3344432 1111 111111 1111111111 11112234456777
Q ss_pred HhccCCCCCCCCChHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~ 802 (818)
..|++.||++||++.|+++
T Consensus 249 ~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 249 NKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHSCSSTTTSCCHHHHHH
T ss_pred HHHcCCChhHCCCHHHHhc
Confidence 8999999999999999986
No 230
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=134.11 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=29.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++.............||.+|+|||
T Consensus 130 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE 172 (311)
T 4agu_A 130 PENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPE 172 (311)
T ss_dssp GGGEEECTTSCEEECCCTTCEECC------------GGGCCHH
T ss_pred hhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChH
Confidence 8999999999999999999998765444445668999999999
No 231
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=138.51 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHh---------c-ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFS---------S-TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~---------~-~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||+.|+||| ...+...+.|+ . ...+. ..
T Consensus 145 p~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 224 (327)
T 3lzb_A 145 ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 224 (327)
T ss_dssp GGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred HHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 8999999999999999999998754322 234456788999999 22222223332 1 11111 11
Q ss_pred c---cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 L---TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~---~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
. .+.+........ +......+.+++..|++.+|++||++.|+++.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 276 (327)
T 3lzb_A 225 ASEISSILEKGERLPQ---PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276 (327)
T ss_dssp GGGHHHHHHTTCCCCC---CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1 111112111111 222344567788899999999999999999999987
No 232
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=139.91 Aligned_cols=113 Identities=13% Similarity=0.221 Sum_probs=70.4
Q ss_pred ccccccCCCCcccccccccceeccCCC--------CCccccccccceeCCC--CC--------Cc-chHHHHhcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--------SNRTLIAGTYRYIAPA--KH--------PQ-EILSLFSST----- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--------~~~~~~~gt~gy~aPE--~~--------~~-~~l~~~~~~----- 749 (818)
|+|||++.++.+||+|||+++.+.... ......+||.+|+||| .. +. ...+.|+..
T Consensus 148 p~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~e 227 (336)
T 3g2f_A 148 SRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227 (336)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHH
Confidence 899999999999999999999775321 1123567999999999 21 11 122334211
Q ss_pred -------cCCCccccce-------------------------ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 750 -------SDPHITLTYI-------------------------LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 750 -------~~~~~~~~~~-------------------------~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
.++.....+. ..+.+.... .........+.+++..|++.+|++||++
T Consensus 228 ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~ 306 (336)
T 3g2f_A 228 IFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAW-KENSLAVRSLKETIEDCWDQDAEARLTA 306 (336)
T ss_dssp HHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTC-CCCSHHHHHHHHHHHHHSCSSGGGSCCH
T ss_pred HHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCccc-ccccchHHHHHHHHHHHhcCChhhCcch
Confidence 1111100000 001111111 1122345568889999999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.||+++|+++
T Consensus 307 ~e~l~~L~~l 316 (336)
T 3g2f_A 307 QXAEERMAEL 316 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 233
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.9e-12 Score=138.95 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=60.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCCC--------------CCcc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPAK--------------HPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE~--------------~~~~-~l~~~~~-------- 748 (818)
|+|||++ ++.+||+|||+++....... .....+||++|+|||. .+.+ ..+.|+.
T Consensus 136 p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell 214 (343)
T 3dbq_A 136 PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 214 (343)
T ss_dssp GGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHH
T ss_pred cceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHH
Confidence 8999997 57799999999998754432 2345689999999991 1111 3334432
Q ss_pred -ccCCCcc-------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 749 -TSDPHIT-------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 749 -~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...+... ...++++...... +......+.+++..|++.+|++||+|.||++.
T Consensus 215 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 215 YGKTPFQQIINQISKLHAIIDPNHEIEF---PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp HSSCTTTTCCSHHHHHHHHHCTTSCCCC---CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hCCCcchhhhhHHHHHHHHhcCCcccCC---cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 1111111 1122232222222 11112345677789999999999999999853
No 234
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.25 E-value=1.7e-12 Score=137.17 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=58.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Ccc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HIT--L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~--~ 756 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+.. ..+ ... .
T Consensus 164 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~ 243 (310)
T 2wqm_A 164 PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 243 (310)
T ss_dssp GGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCH
T ss_pred HHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhH
Confidence 8999999999999999999987755443344567999999999 22222 23333211 111 100 0
Q ss_pred cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++ ......... .......+.+++..|++.||++||++.+|++.|+++
T Consensus 244 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l 295 (310)
T 2wqm_A 244 YSLCKKIEQCDYPPLP---SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRM 295 (310)
T ss_dssp HHHHHHHHTTCSCCCC---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCc---ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 000 001111100 111233466778899999999999999999999988
No 235
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.25 E-value=1.2e-12 Score=136.87 Aligned_cols=116 Identities=19% Similarity=0.283 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC------CCCcc-hHHHHhc---------ccCCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------TSDPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~~~~~~~ 755 (818)
|+|||++.++.+||+|||+++..... ........||.+|+||| ..+.+ ..+.|+. ...+...
T Consensus 148 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 227 (289)
T 3og7_A 148 SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN 227 (289)
T ss_dssp GGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred cceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccc
Confidence 89999999999999999999876432 22234567999999999 11211 2333321 1111110
Q ss_pred ------ccceec-ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 756 ------LTYILD-QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 756 ------~~~~~d-~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
..+.+. .............+...+.+++..|++.+|++||++.+|+++|+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 228 INNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp CCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred cchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 011111 111111101112334567778889999999999999999999998753
No 236
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=7e-10 Score=121.30 Aligned_cols=331 Identities=12% Similarity=0.103 Sum_probs=183.3
Q ss_pred CCCCcCCCC-CCcEEEcCCCCCcccCCccccCCCcCceecccCcc---cccCCCCCCCCCCCCcEEECcCCCCCCCCccc
Q 003465 93 DQFNFSCFP-NLESFRIWYSNISGNIPSEIGALSKLQILDLSHNN---LTGTIPSKLGNLNNLVELYLSRSNLNGPIPST 168 (818)
Q Consensus 93 ~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 168 (818)
...+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 444577774 5888888643 555556678888888888887663 44344567777888887777554 33344456
Q ss_pred cCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcce
Q 003465 169 LGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLN 248 (818)
Q Consensus 169 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 248 (818)
|..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++..-...|.+ .+|+.+.+..+-. ......+..+..++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccc
Confidence 777788888887643 33234456677778888877654 33333344443 5677777765432 23345566666676
Q ss_pred EEEccCCCCCCCCCccc-cCCCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCC
Q 003465 249 SLDLSSKQLSGPLPQEI-GYLENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSN 327 (818)
Q Consensus 249 ~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 327 (818)
......+..... ...+ .......... ..+.....+..+.+.. .+.......|..+..|+.+.+..+
T Consensus 209 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 209 TITSDSESYPAI-DNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp EEEECCSSSCBS-SSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred eecccccccccc-cceeecccccccccc-----------cccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 666554433211 1100 0000000000 0011122233333321 111222345666666777766544
Q ss_pred cCCCCcCccccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCc
Q 003465 328 QINGSIPLGIGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPS 407 (818)
Q Consensus 328 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 407 (818)
... .....+.++++|+.+.+.. .+.......|.++.+|+.++|..+ ++......|.+|.+|+.+.+..+ ++..-..
T Consensus 276 ~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 VVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 322 3334566677777777753 344444566777777887777654 44444567778888888888544 5544456
Q ss_pred cccCCCCCCEEecccCcCcccCCccccCCCCCCEEECcCCcC
Q 003465 408 ELMNCFSLQSLILSNNSLTGRIPSEIRNLSYLHELDLSLNFI 449 (818)
Q Consensus 408 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 449 (818)
.|.+|.+|+.+++.++.... ..+..+..|+.+.+..|.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 77788888888887775432 3455667777777766543
No 237
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.25 E-value=3e-12 Score=135.13 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=67.7
Q ss_pred ccccccCCCCcccccccccceeccCC--CCCccccccccceeCCC------CCCcc-hHHHHhc---------ccCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA------KHPQE-ILSLFSS---------TSDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE------~~~~~-~l~~~~~---------~~~~~~- 754 (818)
|+|||+++++.+||+|||+|+..... ........||++|+||| ..+.+ ..+.|+. ...+..
T Consensus 160 p~NIll~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~ 239 (307)
T 3lb7_A 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH 239 (307)
T ss_dssp SSSEEECTTSCEEECCCCSSCC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred hhhEEEcCCCCEEEccCCCceecccccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence 89999999999999999999876432 22234567999999999 12222 2333431 111111
Q ss_pred -ccc----ceecccC-CCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 755 -TLT----YILDQRI-SPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 755 -~~~----~~~d~~l-~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
... .++.... ..........+...+.+++..|++.+|++||++.||++.|+.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~ 300 (307)
T 3lb7_A 240 INNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CCCHHHHHHHHHHTCCCCCSTTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhcCCCCcchhhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHh
Confidence 000 0010111 110000112234456778889999999999999999999998743
No 238
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=132.40 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=35.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ...+..+||.+|+|||
T Consensus 148 p~Nil~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE 189 (308)
T 3g33_A 148 PENILVTSGGTVKLADFGLARIYSYQ-MALTPVVVTLWYRAPE 189 (308)
T ss_dssp TTTEEECTTSCEEECSCSCTTTSTTC-CCSGGGGCCCSSCCHH
T ss_pred HHHEEEcCCCCEEEeeCccccccCCC-cccCCccccccccCch
Confidence 89999999999999999999876433 2335578999999999
No 239
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.25 E-value=3.9e-12 Score=135.81 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=65.9
Q ss_pred ccccccCCCCcccccccccceeccCCC------------CCccccccccceeCCC---C-CCcchHHHHhccc-------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS------------SNRTLIAGTYRYIAPA---K-HPQEILSLFSSTS------- 750 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~------------~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~~~------- 750 (818)
|+|||++.++.+||+|||+++...... ......+||++|+||| . ..+...+.|+...
T Consensus 192 p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 271 (332)
T 3qd2_B 192 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY 271 (332)
T ss_dssp GGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHS
T ss_pred cccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHH
Confidence 899999999999999999999875442 1224467999999999 2 2222334443211
Q ss_pred --CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 751 --DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 751 --~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+.....++...................+.+++..|++.+|++||++.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 272 SFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred cCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 1110001111111111111112233445677888999999999999999986
No 240
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.25 E-value=2e-12 Score=144.09 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+|+............+||++|+||| ..+ +...+.|+.. ..+ .....+
T Consensus 277 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 356 (446)
T 4ejn_A 277 LENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK 356 (446)
T ss_dssp GGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 222 2233344321 111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+.+....... ..+......+.+++..|++.||++|| ++.|+++
T Consensus 357 ~~~~i~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 357 LFELILMEEI-RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 1111110000 00111223456677899999999999 9999874
No 241
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.25 E-value=6.9e-12 Score=133.01 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=36.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++............+||.+|+|||
T Consensus 136 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 178 (317)
T 2pmi_A 136 PQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPD 178 (317)
T ss_dssp GGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHH
T ss_pred hHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCch
Confidence 8999999999999999999998755444445567999999999
No 242
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.24 E-value=9.1e-13 Score=141.66 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+|+............+||++|+||| ...+...+.|+.. .+......+
T Consensus 152 p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 231 (353)
T 3txo_A 152 LDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD 231 (353)
T ss_dssp GGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999986544444455678999999999 1111133444321 111111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh------HHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM------QRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m------~~V~~ 802 (818)
+....+.... ..+......+..+...|++.+|++||++ .|+.+
T Consensus 232 ~~~~i~~~~~-~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 232 LFEAILNDEV-VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred HHHHHHcCCC-CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 1111111100 0011112345567779999999999998 66653
No 243
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.24 E-value=2.4e-12 Score=135.01 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~ 757 (818)
|+|||+|.++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+. ...+ .....
T Consensus 139 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~ 218 (294)
T 4eqm_A 139 PQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV 218 (294)
T ss_dssp GGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH
T ss_pred HHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH
Confidence 8999999999999999999987654322 234567999999999 22211 2233321 1111 11111
Q ss_pred c----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccCCC
Q 003465 758 Y----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKFPY 809 (818)
Q Consensus 758 ~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~~~ 809 (818)
+ .+.............+....+.+++.+|++.+|++|| ++.++.+.|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 219 SIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp HHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred HHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 1 0111111000000112234567788899999999998 89999999998843
No 244
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.24 E-value=3e-12 Score=135.59 Aligned_cols=114 Identities=12% Similarity=0.219 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCcc-hHHHHh---------c-cc--CCCcc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TS--DPHIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~--~~~~~ 755 (818)
|+||++++++.+||+|||+++...... .......|++.|+||| ..+.+ ..+.|+ . .. +....
T Consensus 175 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 254 (313)
T 3brb_A 175 ARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ 254 (313)
T ss_dssp GGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence 899999999999999999998765432 1234456889999999 22222 223332 1 11 11111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l 306 (313)
T 3brb_A 255 NHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306 (313)
T ss_dssp GGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1122111111111011223345677788899999999999999999999876
No 245
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.24 E-value=4.9e-12 Score=132.83 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCC----CCCccccccccceeCCC---C-CCcchHHHHhc----------cc--CCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD----SSNRTLIAGTYRYIAPA---K-HPQEILSLFSS----------TS--DPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~----~~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~----------~~--~~~ 753 (818)
|+|||+++++.+||+|||+++..... ........||.+|+||| . ..+...+.|+. .. +..
T Consensus 152 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~ 231 (298)
T 3pls_A 152 ARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH 231 (298)
T ss_dssp GGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT
T ss_pred cceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc
Confidence 89999999999999999999866432 12234567899999999 2 22222333321 11 111
Q ss_pred ccccce---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 754 ITLTYI---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 754 ~~~~~~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....++ +........ +......+.+++..|++.+|++||++.+++++|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~ 285 (298)
T 3pls_A 232 IDPFDLTHFLAQGRRLPQ---PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI 285 (298)
T ss_dssp SCGGGHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCCCC---CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111 111111111 122234566788899999999999999999999987
No 246
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.24 E-value=1.9e-12 Score=138.41 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=70.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||+++++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 192 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 271 (333)
T 2i1m_A 192 ARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL 271 (333)
T ss_dssp GGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred cceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 89999999999999999999977544322 23466889999999 222222233321 11111 10
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
...++........ +......+.+++..|++.+|.+||++.||++.|+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 272 VNSKFYKLVKDGYQMAQ---PAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp SSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 0111111111111 1122345667888999999999999999999998773
No 247
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=5.1e-10 Score=122.38 Aligned_cols=331 Identities=11% Similarity=0.068 Sum_probs=190.3
Q ss_pred CccccCCC-cCceecccCcccccCCCCCCCCCCCCcEEECcCCC---CCCCCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 118 PSEIGALS-KLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN---LNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 118 ~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
..+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44676664 5888888754 554556778888888888887654 44333456777777777766544 333334456
Q ss_pred CCCCCCcEEEcccCcCCccCCccccCCCCCCEEEccCCcCCCCCCCCCCCCCcceEEEccCCCCCCCCCccccCCCCCcE
Q 003465 194 GHLTQLTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGNKLNGPIASTIGDLTNLNSLDLSSKQLSGPLPQEIGYLENLVY 273 (818)
Q Consensus 194 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 273 (818)
..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.....+|.. ..|+.+.+..+... .....+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccce
Confidence 66777777777543 33344455666677777766543 22222333332 45666665443221 22334444555555
Q ss_pred EEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcc
Q 003465 274 LSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKL 353 (818)
Q Consensus 274 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 353 (818)
.....+.... ....+.. .+.........+.....+..+.+.. .+...-...|.++..|+.+.+..+..
T Consensus 210 ~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 210 ITSDSESYPA-IDNVLYE----------KSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp EEECCSSSCB-SSSCEEE----------ECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred eccccccccc-ccceeec----------ccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc
Confidence 5444333221 1100000 0000000000111223334444432 23323345688899999999987654
Q ss_pred cccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcccCCccc
Q 003465 354 EGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTGRIPSEI 433 (818)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 433 (818)
. .....|.++++|+.+.+. +.++......|.++.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ ++..-...|
T Consensus 278 ~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp E-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred e-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 3 556678899999999996 4555566678999999999999865 65555678999999999999755 664556789
Q ss_pred cCCCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcC
Q 003465 434 RNLSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRL 479 (818)
Q Consensus 434 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l 479 (818)
.++++|+.+++.++.... ..+.... .|+.+.+..|.+
T Consensus 354 ~~C~~L~~i~~~~~~~~~---~~~~~~~------~L~~i~i~~~~~ 390 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW---NAISTDS------GLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEESSCHHHH---HTCBCCC------CC----------
T ss_pred hCCCCCCEEEECCceeeh---hhhhccC------CCCEEEeCCCCE
Confidence 999999999999875431 1222222 667776665543
No 248
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.23 E-value=3.9e-12 Score=148.55 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=66.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||||+++++||+|||+|+............+||++|+||| ..+.+ ..+.|+.. .+......+
T Consensus 470 p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~ 549 (674)
T 3pfq_A 470 LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 549 (674)
T ss_dssp STTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999997654444556788999999999 23333 44455421 111111112
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh-----HHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM-----QRVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m-----~~V~ 801 (818)
+....+.... ..+......+.+++..|++.+|++||++ .||.
T Consensus 550 ~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~ 596 (674)
T 3pfq_A 550 LFQSIMEHNV-AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596 (674)
T ss_dssp HHHHHHSSCC-CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHH
T ss_pred HHHHHHhCCC-CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHh
Confidence 2211111111 0111122345667779999999999997 5655
No 249
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.23 E-value=2.7e-12 Score=140.19 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=62.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---C-----------CCcc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---K-----------HPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~-----------~~~~-~l~~~~~-------- 748 (818)
|+|||++ ++.+||+|||+++.+..... .....+||++|+||| . .+.+ ..+.|+.
T Consensus 183 p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell 261 (390)
T 2zmd_A 183 PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 261 (390)
T ss_dssp GGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHH
Confidence 8999996 57899999999997754322 234568999999999 1 1122 3344432
Q ss_pred -ccCCCc-------cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 749 -TSDPHI-------TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 749 -~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.. .+..++++.......... ...+.+++..|++.+|++||++.||++
T Consensus 262 ~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 262 YGKTPFQQIINQISKLHAIIDPNHEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp HSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HCCCcchhhhHHHHHHHHHhCccccCCCCccc---hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 111111 112233333322221111 234567778999999999999999985
No 250
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.23 E-value=6.6e-12 Score=140.20 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=29.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+|+..... ...+..+||.+|+|||
T Consensus 192 p~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE 233 (464)
T 3ttj_A 192 PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPE 233 (464)
T ss_dssp GGGEEECTTSCEEECCCCCC-----C-CCC----CCCTTCCHH
T ss_pred hHhEEEeCCCCEEEEEEEeeeecCCC-cccCCCcccccccCHH
Confidence 89999999999999999999976543 2345578999999999
No 251
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.23 E-value=1.1e-11 Score=132.82 Aligned_cols=115 Identities=16% Similarity=0.281 Sum_probs=73.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC----CccccccccceeCCC--CCC--------cchHHHHh---------cc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--KHP--------QEILSLFS---------ST- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~~~--------~~~l~~~~---------~~- 749 (818)
|+|||+|+++++||+|||+++....... ......||.+|+||| ... +...+.|+ ..
T Consensus 175 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~ 254 (342)
T 1b6c_B 175 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRC 254 (342)
T ss_dssp GGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhcc
Confidence 8999999999999999999988755432 234567999999999 111 01223332 11
Q ss_pred ---------cCCCcc-------ccc----eecccCCCcCcc--chHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 750 ---------SDPHIT-------LTY----ILDQRISPPKKQ--KIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 750 ---------~~~~~~-------~~~----~~d~~l~~~~~~--~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+... ..+ +....+...... ...++...+.+++..|++.+|++||++.+|++.|+++
T Consensus 255 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i 334 (342)
T 1b6c_B 255 SIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334 (342)
T ss_dssp CBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 111100 000 111122221101 1235566788899999999999999999999999987
Q ss_pred C
Q 003465 808 P 808 (818)
Q Consensus 808 ~ 808 (818)
.
T Consensus 335 ~ 335 (342)
T 1b6c_B 335 S 335 (342)
T ss_dssp H
T ss_pred H
Confidence 3
No 252
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.22 E-value=4.7e-12 Score=141.72 Aligned_cols=43 Identities=28% Similarity=0.280 Sum_probs=32.1
Q ss_pred ccccccCCCCcccccccccceeccCCC---------------------------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS---------------------------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~---------------------------~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+|+...... ...+..+||.+|+|||
T Consensus 184 p~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE 253 (458)
T 3rp9_A 184 PANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPE 253 (458)
T ss_dssp GGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHH
T ss_pred hhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChH
Confidence 899999999999999999999774321 1234567999999999
No 253
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.22 E-value=2.4e-12 Score=133.57 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC--cchHHHHhc---------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP--QEILSLFSS---------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~--~~~l~~~~~---------~~~~--~~~~~ 757 (818)
|+|||+++++.+||+|||+++....... ....+||.+|+||| ..+ ....+.|+. ...+ .....
T Consensus 140 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 218 (275)
T 2eue_A 140 PENLLLDEHLNVKIADFGLSNIMTDGNF-LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP 218 (275)
T ss_dssp GGGEEECTTSCEEECCSSCC----------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred hHhEEECCCCCEEEeecccceeccCccc-ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence 8999999999999999999987654322 23457999999999 111 122333431 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+......... ..+......+.+++..|++.+|++||++.|+++
T Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 219 VLFKNISNGVY-TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHTCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHhCCC-CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 11110000000 001112234567788999999999999999974
No 254
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.22 E-value=2.6e-12 Score=134.22 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=70.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHh---------c-ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~~~~--~ 754 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+ . ...+. .
T Consensus 138 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 217 (287)
T 1u59_A 138 ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM 217 (287)
T ss_dssp GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence 8999999999999999999998754322 223456789999999 11111 222222 1 11111 1
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...++......+.....+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 218 KGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp CTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111001100011223345667788899999999999999999999988
No 255
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.22 E-value=5.5e-12 Score=134.71 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=29.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.............||.+|+|||
T Consensus 152 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE 194 (331)
T 4aaa_A 152 PENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPE 194 (331)
T ss_dssp GGGEEECTTSCEEECCCTTC------------CCCCCTTCCHH
T ss_pred hheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcc
Confidence 8999999999999999999987755444445567999999999
No 256
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.22 E-value=8.3e-12 Score=136.46 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=33.3
Q ss_pred ccccccCCCCcccccccccceeccCC---------------------CCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD---------------------SSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~---------------------~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++.+||+|||+|+.+... ....+..+||.+|+|||
T Consensus 137 p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 200 (388)
T 3oz6_A 137 PSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPE 200 (388)
T ss_dssp GGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHH
T ss_pred HHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHH
Confidence 89999999999999999999976431 11234568999999999
No 257
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=137.05 Aligned_cols=148 Identities=17% Similarity=0.053 Sum_probs=93.4
Q ss_pred hcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh------------------------------------
Q 003465 653 DIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------------ 691 (818)
Q Consensus 653 ~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------------ 691 (818)
...|| |.||+|.. .+|+.||||.+........++|.+|+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 34566 89999985 56999999977655444556677776
Q ss_pred ------------------------------------cc---cccccc--CCCCcccccccccceeccCCCCCcccccccc
Q 003465 692 ------------------------------------HV---FNNILL--NSEFEAFFGNFGVARLLNSDSSNRTLIAGTY 730 (818)
Q Consensus 692 ------------------------------------h~---~~NILL--d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 730 (818)
|+ |+|||+ ++++.+||+|||+++....... ....+||+
T Consensus 174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~-~~~~~gt~ 252 (373)
T 2x4f_A 174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK-LKVNFGTP 252 (373)
T ss_dssp HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB-CCCCCSSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc-cccccCCC
Confidence 22 899999 6788999999999998754332 33457999
Q ss_pred ceeCCC---CCCcc-hHHHHhc---------c--cCCCcc----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCC
Q 003465 731 RYIAPA---KHPQE-ILSLFSS---------T--SDPHIT----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKP 791 (818)
Q Consensus 731 gy~aPE---~~~~~-~l~~~~~---------~--~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p 791 (818)
+|+||| ....+ ..+.|+. . .+.... +..++........ .........+.++...|++.+|
T Consensus 253 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dp 331 (373)
T 2x4f_A 253 EFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLED-EEFQDISEEAKEFISKLLIKEK 331 (373)
T ss_dssp TTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCS-GGGTTSCHHHHHHHHTTSCSSG
T ss_pred cEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCCh-hhhccCCHHHHHHHHHHcCCCh
Confidence 999999 22222 3333431 1 111111 1112222211111 1111223456677889999999
Q ss_pred CCCCChHHHHH
Q 003465 792 KSVPTMQRVSQ 802 (818)
Q Consensus 792 ~~RP~m~~V~~ 802 (818)
++||++.|+++
T Consensus 332 ~~Rps~~e~l~ 342 (373)
T 2x4f_A 332 SWRISASEALK 342 (373)
T ss_dssp GGSCCHHHHHH
T ss_pred hhCCCHHHHhc
Confidence 99999999986
No 258
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.22 E-value=3.2e-12 Score=135.95 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=69.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+||+++.++.+||+|||+++....... ......||.+|+||| ...+...+.|+. ...+ ...
T Consensus 166 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~ 245 (322)
T 1p4o_A 166 ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS 245 (322)
T ss_dssp GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC
T ss_pred cceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC
Confidence 8999999999999999999987644322 123456789999999 222222233321 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++............+......+.+++..|++.+|++||++.||++.|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 246 NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 1111111111100011122334566788899999999999999999999987
No 259
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.22 E-value=2.8e-12 Score=138.90 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=68.9
Q ss_pred ccccccC--CCCcccccccccceeccCCCC-------CccccccccceeCCC---CC-CcchHHHHhc---------ccC
Q 003465 694 FNNILLN--SEFEAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd--~~~~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~ 751 (818)
|+|||++ .++.+||+|||+|+.+..... .....+||++|+||| .. .+...+.|+. ...
T Consensus 180 p~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~ 259 (364)
T 3op5_A 180 ASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHL 259 (364)
T ss_dssp GGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999 899999999999988753311 124466999999999 22 2222333331 111
Q ss_pred CCcc------------------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 752 PHIT------------------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 752 ~~~~------------------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+... +.+++++.+.. ......+.+++..|++.+|++||+|.+|++.|+++
T Consensus 260 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 260 PWEDNLKDPKYVRDSKIRYRENIASLMDKCFPA------ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCT------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHhhhhHHHHHHHhccc------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 1110 00111111100 01134567788899999999999999999999877
No 260
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.22 E-value=3.1e-12 Score=138.45 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+++............+||+.|+||| ..+.+ ..+.|+.. .+......+
T Consensus 167 p~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 246 (373)
T 2r5t_A 167 PENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 246 (373)
T ss_dssp GGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH
T ss_pred HHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999987544444456678999999999 22222 34444321 111111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEF 804 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L 804 (818)
++...+.... .....+.+++..|++.+|++||++.+.++++
T Consensus 247 ~~~~i~~~~~~~~~-----~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 247 MYDNILNKPLQLKP-----NITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp HHHHHHHSCCCCCS-----SSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred HHHHHHhcccCCCC-----CCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 1222221111 1123455677799999999999986544443
No 261
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.22 E-value=2.1e-11 Score=131.84 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---------CCcc-hHHHHhc---------ccCCC-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---------HPQE-ILSLFSS---------TSDPH- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---------~~~~-~l~~~~~---------~~~~~- 753 (818)
|+|||+++++.+||+|||+++.+.... .....+||++|+|||. .+.+ ..+.|+. ...+.
T Consensus 228 p~NIl~~~~~~ikl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~ 306 (365)
T 2y7j_A 228 PENILLDDNMQIRLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW 306 (365)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHEEECCCCCEEEEecCcccccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCC
Confidence 899999999999999999999875443 2345689999999991 1111 2333431 11111
Q ss_pred -ccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 -ITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 -~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 307 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 307 HRRQILMLRMIMEGQYQFSS-PEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp CSSHHHHHHHHHHTCCCCCH-HHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCC-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11001 1111111110 001112234667888999999999999999986
No 262
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.21 E-value=6.4e-12 Score=135.99 Aligned_cols=97 Identities=24% Similarity=0.189 Sum_probs=63.5
Q ss_pred chHHHHHHHhhhhhhcccc----CcEEEEEcCCCcEEEEEeccccccc-----------hhhhhHhhh------------
Q 003465 639 AFEEIIRATEDLISDIALE----LDVTAAFTKHGCLVAEYGSEQGRSA-----------FFKSFQNEA------------ 691 (818)
Q Consensus 639 ~~~~l~~at~~f~~~~~ig----g~vy~~~~~~g~~vAvK~~~~~~~~-----------~~~~f~~E~------------ 691 (818)
...++....++|.....+| |.||+|...+|..||||++...... ..+.|.+|+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 3556666777787777787 8999999878999999965432211 114466665
Q ss_pred ----------------------------------------------------------------cc---ccccccCCCCc
Q 003465 692 ----------------------------------------------------------------HV---FNNILLNSEFE 704 (818)
Q Consensus 692 ----------------------------------------------------------------h~---~~NILLd~~~~ 704 (818)
|+ |+|||++.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~ 172 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND 172 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence 22 89999999999
Q ss_pred ccccccccceeccCCCCCccccccccceeCCC
Q 003465 705 AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 705 ~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
+||+|||+++...... ..+...||.+|+|||
T Consensus 173 ~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE 203 (362)
T 3pg1_A 173 ITICDFNLAREDTADA-NKTHYVTHRWYRAPE 203 (362)
T ss_dssp EEECCTTC----------------CGGGCCHH
T ss_pred EEEEecCccccccccc-ccceecccceecCcH
Confidence 9999999998654332 234567999999999
No 263
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.21 E-value=2.5e-12 Score=137.52 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=70.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||++|+||| +..+...+.|+. ...+ ...
T Consensus 185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 264 (334)
T 2pvf_A 185 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 264 (334)
T ss_dssp GGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC
Confidence 8899999999999999999997754322 234556889999999 211112223321 1111 111
Q ss_pred ccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.. ....... +......+.+++..|++.+|++||++.||++.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l 316 (334)
T 2pvf_A 265 VEELFKLLKEGHRMDK---PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316 (334)
T ss_dssp HHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC---CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111 1111111 122334567788899999999999999999999988
No 264
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.21 E-value=1.8e-12 Score=138.84 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=64.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------c--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------S--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~--~~~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+.+ ..+.|+.. . +......+
T Consensus 146 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 225 (345)
T 1xjd_A 146 LDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE 225 (345)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999987544444456678999999999 22222 34445321 1 11111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChH-HHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQ-RVS 801 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~-~V~ 801 (818)
+......... ..+......+.++...|++.+|++||++. +|.
T Consensus 226 ~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 226 LFHSIRMDNP-FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHhCCC-CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 1111000000 00111123455677799999999999997 554
No 265
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.21 E-value=6.4e-12 Score=134.93 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=93.3
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEecccccc---chhhhhHhhh----------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRS---AFFKSFQNEA---------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~---~~~~~f~~E~---------------------------- 691 (818)
+.|.....+| |.||+|.. .+|+.||||.+..... ...++|.+|+
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4466666777 89999984 6799999997653321 2234577776
Q ss_pred -------------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccc
Q 003465 692 -------------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+++++.+||+|||+++..... ..
T Consensus 134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~----~~ 209 (348)
T 1u5q_A 134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NS 209 (348)
T ss_dssp ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----CC
T ss_pred ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC----Cc
Confidence 22 89999999999999999999876432 34
Q ss_pred cccccceeCCC------CCCcc-hHHHHhcc---------cCC--Ccccc----ceecccCCCcCccchHHHHHHHHHHH
Q 003465 726 IAGTYRYIAPA------KHPQE-ILSLFSST---------SDP--HITLT----YILDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 726 ~~gt~gy~aPE------~~~~~-~l~~~~~~---------~~~--~~~~~----~~~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
..||++|+||| ..+.+ ..+.|+.. ..+ ..... .+......... .......+.+++
T Consensus 210 ~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li 286 (348)
T 1u5q_A 210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ---SGHWSEYFRNFV 286 (348)
T ss_dssp CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCC---CTTSCHHHHHHH
T ss_pred ccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCC---CCCCCHHHHHHH
Confidence 57999999999 12222 33344321 111 11100 11111110000 111123455677
Q ss_pred HhccCCCCCCCCChHHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~~ 803 (818)
..|++.+|++||++.++++.
T Consensus 287 ~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 287 DSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHHTCSSGGGSCCHHHHTTC
T ss_pred HHHcccChhhCcCHHHHhhC
Confidence 79999999999999998753
No 266
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.21 E-value=4e-12 Score=134.65 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC---CCCcc-hHHHHh---------c-ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA---KHPQE-ILSLFS---------S-TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE---~~~~~-~l~~~~---------~-~~~~--~~~ 755 (818)
|+||++++++.+||+|||+++....... ......||++|+||| ..+.+ ..+.|+ . ...+ ...
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 8999999999999999999997754332 234456889999999 12111 222232 1 1111 111
Q ss_pred ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..++.+..........+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~ 309 (314)
T 2ivs_A 258 PERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309 (314)
T ss_dssp GGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1111111000100011222344567788899999999999999999999876
No 267
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.21 E-value=6.4e-12 Score=140.16 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCc--chHHHHhcc-----------cCCCcccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ--EILSLFSST-----------SDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~-----------~~~~~~~~ 757 (818)
|+|||+|.++.+||+|||+++...... .....+||++|+||| ..+. ...+.|+.. .+......
T Consensus 144 p~NIll~~~~~vkL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~ 222 (476)
T 2y94_A 144 PENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP 222 (476)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCTTC-CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH
T ss_pred HHHEEEecCCCeEEEeccchhhccccc-cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH
Confidence 899999999999999999999875433 234567999999999 2221 234444321 11111111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......+.. ..+......+.+++..|++.||++||++.||++
T Consensus 223 ~~~~~i~~~~~-~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 223 TLFKKICDGIF-YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHHHHTTCC-CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHhcCCc-CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 11111111110 001111234566778999999999999999986
No 268
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.21 E-value=3.6e-12 Score=136.93 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=62.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~~~ 758 (818)
|+|||+|.++++||+|||+++............+||++|+||| ..+.+ ..+.|+.. .+......+
T Consensus 149 p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~ 228 (353)
T 2i0e_A 149 LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 228 (353)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred HHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH
Confidence 8999999999999999999987544444455678999999999 22322 34445321 111111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
+....... +......+.+++..|++.+|++||++
T Consensus 229 ~~~~i~~~~~~~-----p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 229 LFQSIMEHNVAY-----PKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHHHCCCCC-----CTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred HHHHHHhCCCCC-----CCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11211111 11122345667779999999999964
No 269
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.21 E-value=5.8e-12 Score=132.68 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=66.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCc--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHI--TLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~--~~~~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+. ...+.. ...+
T Consensus 147 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 226 (303)
T 3a7i_A 147 AANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK 226 (303)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred hheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH
Confidence 8999999999999999999988765444445668999999999 22221 2233321 111110 0000
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
+ +........ .......+.+++..|++.+|++||++.+|++.
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 227 VLFLIPKNNPPTL---EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHHHHHHSCCCCC---CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred HHHHhhcCCCCCC---ccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 0 000000001 11122346678889999999999999999863
No 270
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.21 E-value=3e-12 Score=135.81 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=71.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCC---------ccccccccceeCCCC---CC----cchHHHHhc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN---------RTLIAGTYRYIAPAK---HP----QEILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~---------~~~~~gt~gy~aPE~---~~----~~~l~~~~~--------- 748 (818)
|+||+++.++.+||+|||+++........ .....||.+|+|||. .+ ....+.|+.
T Consensus 162 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~ 241 (317)
T 2buj_A 162 PTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMF 241 (317)
T ss_dssp GGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHH
T ss_pred HHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHh
Confidence 89999999999999999999865321110 124568999999991 11 113333431
Q ss_pred ccCCC-------ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcCc
Q 003465 749 TSDPH-------ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLDL 812 (818)
Q Consensus 749 ~~~~~-------~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~~ 812 (818)
...+. ......+........ .......+.+++..|++.+|.+||++.+|++.|+.+.....
T Consensus 242 g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~ 309 (317)
T 2buj_A 242 GEGPYDMVFQKGDSVALAVQNQLSIPQ---SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP 309 (317)
T ss_dssp SSCTTHHHHHTTSCHHHHHHCC--CCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred CCCChhhhhcccchhhHHhhccCCCCc---cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence 11111 001111111111111 11223456678889999999999999999999999965543
No 271
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.20 E-value=7.5e-12 Score=136.21 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=37.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+|+............+||++|+|||
T Consensus 181 p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE 223 (396)
T 4dc2_A 181 LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE 223 (396)
T ss_dssp GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHH
T ss_pred HHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCch
Confidence 8999999999999999999987544444456678999999999
No 272
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=134.48 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++.............||.+|+|||
T Consensus 128 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 170 (324)
T 3mtl_A 128 PQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPD 170 (324)
T ss_dssp GGGEEECTTCCEEECSSSEEECC------------CGGGCCHH
T ss_pred HHHEEECCCCCEEEccCcccccccCCccccccccCcccccChh
Confidence 8999999999999999999987654444445567999999999
No 273
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.20 E-value=6e-12 Score=133.76 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=65.8
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCc--chHHHHhcc---------cCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQ--EILSLFSST---------SDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~~---------~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++.+.... ......+||++|+||| ..+. ...+.|+.. ..+. ..
T Consensus 133 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 212 (323)
T 3tki_A 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (323)
T ss_dssp GGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred hHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence 899999999999999999998764332 2234678999999999 2222 123444321 1111 00
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
. ..+........ ........+.+++..|++.+|++||++.|+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 213 DSCQEYSDWKEKKTYLN---PWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp TTSHHHHHHHTTCTTST---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred hHHHHHHHHhcccccCC---ccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 00011111101 011223445678889999999999999999754
No 274
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.20 E-value=5.6e-12 Score=134.32 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=58.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhcc---------c--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSST---------S--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~~---------~--~~~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++............+||++|+||| ..+ ....+.|+.. . +......+
T Consensus 149 p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~ 228 (327)
T 3a62_A 149 PENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK 228 (327)
T ss_dssp TTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred HHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH
Confidence 8999999999999999999987644444445678999999999 222 2233344321 1 11111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
+....... +......+.++...|++.+|++|| ++.|+++
T Consensus 229 ~~~~i~~~~~~~-----p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 229 TIDKILKCKLNL-----PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHHHHTCCCC-----CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHHHhCCCCC-----CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 11111111 111223456677799999999999 6667764
No 275
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.20 E-value=7e-12 Score=131.42 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=62.6
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC---CC---CcchHHHHhc---------ccCCCcccc
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH---PQEILSLFSS---------TSDPHITLT 757 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~---~~~~l~~~~~---------~~~~~~~~~ 757 (818)
|+||+++. ++.+||+|||+++.............||.+|+||| .. .....+.|+. ...+.....
T Consensus 150 p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 229 (295)
T 2clq_A 150 GDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELG 229 (295)
T ss_dssp GGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGS
T ss_pred hhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCC
Confidence 89999998 89999999999998754433344567999999999 11 1122333321 111111000
Q ss_pred c----eec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 Y----ILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~----~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +.. ....... +......+.+++..|++.+|++||++.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 230 EPQAAMFKVGMFKVHPEI---PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp SHHHHHHHHHHHCCCCCC---CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred chhHHHHhhccccccccc---cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 000 0011111 1122345567788999999999999999985
No 276
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.20 E-value=3.2e-12 Score=133.77 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~--~ 754 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ..+ +...+.|+. ...+. .
T Consensus 145 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 224 (291)
T 1xbb_A 145 ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM 224 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred cceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 8999999999999999999998754432 123455789999999 211 112222321 11111 1
Q ss_pred cccc---eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 755 TLTY---ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 755 ~~~~---~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
...+ .+....... .+......+.+++..|++.+|++||++.+|++.|+++
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 225 KGSEVTAMLEKGERMG---CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp CHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1111 111111111 1222344567788899999999999999999999987
No 277
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.20 E-value=4.4e-12 Score=147.60 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC----CCCcchHHHHhc----------ccCC--Cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~--~~~~ 756 (818)
|+|||+|.++.+||+|||+++....... ..+...||++|+||| ...+...+.|+. ...+ ....
T Consensus 519 p~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 598 (656)
T 2j0j_A 519 ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN 598 (656)
T ss_dssp GGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred hHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH
Confidence 8999999999999999999997754322 234556889999999 222223333431 1111 1111
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.+++.....+...+.+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 599 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 599 NDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 111110000000011222335667788899999999999999999999876
No 278
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=130.30 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=60.6
Q ss_pred ccccccCCCCc-ccccccccceeccCCCCCccccccccceeCCC---C-CCcchHHHHhc---------ccCCCccc---
Q 003465 694 FNNILLNSEFE-AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HPQEILSLFSS---------TSDPHITL--- 756 (818)
Q Consensus 694 ~~NILLd~~~~-~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~~~~l~~~~~---------~~~~~~~~--- 756 (818)
|+|||+++++. +||+|||+++..... .....||.+|+||| . ..+...+.|+. ...+....
T Consensus 133 p~NIll~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~ 209 (307)
T 2eva_A 133 PPNLLLVAGGTVLKICDFGTACDIQTH---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP 209 (307)
T ss_dssp GGGEEEETTTTEEEECCCCC---------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS
T ss_pred hhHEEEeCCCCEEEEcccccccccccc---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc
Confidence 89999988876 899999999865432 23456999999999 2 22222333321 11111100
Q ss_pred -cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 757 -TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 757 -~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.++..........+........+.+++..|++.+|++||+|.+|++.|+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 261 (307)
T 2eva_A 210 AFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261 (307)
T ss_dssp HHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 000000000000011122234566788899999999999999999999887
No 279
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.19 E-value=6.5e-12 Score=132.90 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=70.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||++++++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 252 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 78999999999999999999987554332 23456889999999 222222233321 11111 11
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
....+........ +......+.+++..|++.+|++||++.||+++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 305 (313)
T 1t46_A 253 VDSKFYKMIKEGFRMLS---PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (313)
T ss_dssp SSHHHHHHHHHTCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred chhHHHHHhccCCCCCC---cccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence 1111122221111 112234566788899999999999999999999876
No 280
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.19 E-value=7.7e-12 Score=133.39 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=27.7
Q ss_pred cccccc-----CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL-----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL-----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ ++++.+||+|||+++.........+...||.+|+|||
T Consensus 160 p~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE 207 (329)
T 3gbz_A 160 PQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPE 207 (329)
T ss_dssp GGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHH
T ss_pred HHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHH
Confidence 899999 5666799999999998755444445567899999999
No 281
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.19 E-value=6e-12 Score=131.09 Aligned_cols=110 Identities=23% Similarity=0.295 Sum_probs=70.0
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhccc---------CCCcc----c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSSTS---------DPHIT----L 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~~~---------~~~~~----~ 756 (818)
|+||++++++.+||+|||+++....... .....||.+|+||| .......+.|+... .+... .
T Consensus 150 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~ 228 (284)
T 2a19_B 150 PSNIFLVDTKQVKIGDFGLVTSLKNDGK-RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFF 228 (284)
T ss_dssp GGGEEEEETTEEEECCCTTCEESSCCSC-CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred HHHEEEcCCCCEEECcchhheecccccc-ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 8999999999999999999998754432 33457999999999 22222333343211 11000 0
Q ss_pred cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcC
Q 003465 757 TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLD 811 (818)
Q Consensus 757 ~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~ 811 (818)
..+.+..+... ....+.+++..|++.+|++||++.|+++.|..++...
T Consensus 229 ~~~~~~~~~~~-------~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 229 TDLRDGIISDI-------FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp HHHHTTCCCTT-------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred HHhhccccccc-------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 01111111111 1123456778999999999999999999999885444
No 282
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.19 E-value=4.9e-12 Score=136.78 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=69.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++....... ......||.+|+||| ...+...+.|+. ...+. ..
T Consensus 221 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~ 300 (359)
T 3vhe_A 221 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 300 (359)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence 7899999999999999999997754332 234567999999999 222223333321 11111 11
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
..+. +........ +......+.+++..|++.+|++||+|.||++.|+++
T Consensus 301 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 301 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 1111 111111111 112234567788899999999999999999999876
No 283
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.19 E-value=2.3e-11 Score=131.04 Aligned_cols=108 Identities=20% Similarity=0.178 Sum_probs=65.2
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~ 754 (818)
|+|||++++. .+||+|||+++...... .....+||++|+||| ..+.+ ..+.|+.. ..+ ..
T Consensus 143 p~NIll~~~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~ 221 (361)
T 2yab_A 143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (361)
T ss_dssp GGGEEESCTTSSSCCEEECCCSSCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHEEEeCCCCCccCEEEEecCCceEcCCCC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 8999998877 79999999999875432 234567999999999 22222 34444321 111 11
Q ss_pred cccceecccCCCcC--c-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISPPK--K-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~~~--~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+++........ . ..+......+.+++..|++.||++||++.|+++
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 222 TKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11111111111111 0 001112234567788999999999999999874
No 284
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.19 E-value=6.8e-12 Score=134.76 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=72.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+|||++.++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 89999999999999999999977544322 34566889999999 222222333321 11111 11
Q ss_pred ----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 756 ----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 756 ----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
...++........ +......+.+++..|++.+|++||++.+|++.|+.+...
T Consensus 280 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 280 VDANFYKLIQNGFKMDQ---PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp CSHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred cHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 1111122221111 222344567788899999999999999999999988443
No 285
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.19 E-value=1.8e-11 Score=135.48 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=33.4
Q ss_pred ccccccCCCCc--ccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFE--AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~--~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++. +||+|||+|+..... ....+||.+|+|||
T Consensus 228 p~NILl~~~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~y~aPE 269 (429)
T 3kvw_A 228 PENILLKQQGRSGIKVIDFGSSCYEHQR---VYTYIQSRFYRAPE 269 (429)
T ss_dssp GGGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHH
T ss_pred HHHeEEccCCCcceEEeecccceecCCc---ccccCCCCCccChH
Confidence 89999999987 999999999865432 23457999999999
No 286
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=131.82 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=69.9
Q ss_pred ccccccCCCC--cccccccccceeccCCCC-------CccccccccceeCCC---CCC-cchHHHHhc---------ccC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~ 751 (818)
|+|||++.++ .+||+|||+|+.+..... ......||.+|+||| ..+ +...+.|+. ...
T Consensus 179 p~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~ 258 (345)
T 2v62_A 179 AANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKL 258 (345)
T ss_dssp GGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999888 999999999998743211 124568999999999 222 223333432 111
Q ss_pred CCcc-ccc---e--ecccCCCcCccchH------HHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 752 PHIT-LTY---I--LDQRISPPKKQKIV------QDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 752 ~~~~-~~~---~--~d~~l~~~~~~~~~------~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
+... ... + .............. .....+.+++..|++.+|++||++.+|++.|+.+.
T Consensus 259 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 259 PWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred CccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 1100 000 0 00000000000000 12236777888999999999999999999999874
No 287
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.18 E-value=1.8e-11 Score=135.06 Aligned_cols=108 Identities=21% Similarity=0.186 Sum_probs=57.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCCC------CCcc-hHHHHhc---------ccCC--
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQE-ILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~~-~l~~~~~---------~~~~-- 752 (818)
|+|||++. ++.+||+|||+|+..... ......+||++|+|||. .+.+ ..+.|+. ...+
T Consensus 267 p~NIll~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~ 345 (419)
T 3i6u_A 267 PENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS 345 (419)
T ss_dssp GGGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred hHhEEEecCCCcceEEEeecccceecCCC-ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence 89999965 455999999999976543 23345789999999993 1211 3344432 1111
Q ss_pred Ccc-ccceecccCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HIT-LTYILDQRISPPK---KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~-~~~~~d~~l~~~~---~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ...+.+....+.. .+........+.+++..|++.+|++||++.|+++
T Consensus 346 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 346 EHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 111 0111111111111 0001122345677888999999999999999886
No 288
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.18 E-value=6.8e-12 Score=135.02 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=65.9
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCC-ccc
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPH-ITL 756 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~-~~~ 756 (818)
|+|||++.+.. +||+|||+++............+||++|+||| ..+.+ ..+.|+.. ..+. ...
T Consensus 158 p~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (351)
T 3c0i_A 158 PHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK 237 (351)
T ss_dssp GGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH
T ss_pred hHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH
Confidence 89999987665 99999999998765544445678999999999 22222 33344321 1111 111
Q ss_pred cc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +......... .........+.+++..|++.||++||++.|+++
T Consensus 238 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 238 ERLFEGIIKGKYKMNP-RQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCc-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11 1111111110 000112345667888999999999999999974
No 289
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.18 E-value=2.5e-11 Score=130.78 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=35.6
Q ss_pred ccccccCCCCcccccccccceeccCCC----CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS----SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~----~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+.+.... ...+...||++|+|||
T Consensus 152 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE 198 (351)
T 3mi9_A 152 AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 198 (351)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCch
Confidence 899999999999999999999875321 2234567999999999
No 290
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.18 E-value=8.5e-12 Score=138.29 Aligned_cols=43 Identities=35% Similarity=0.397 Sum_probs=32.6
Q ss_pred ccccccCCCCcccccccccceeccCCCC----------------------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----------------------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----------------------~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+....... ..+..+||..|+|||
T Consensus 157 p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE 221 (432)
T 3n9x_A 157 PANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPE 221 (432)
T ss_dssp GGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHH
T ss_pred HHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHH
Confidence 8999999999999999999998754321 135678999999999
No 291
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=129.26 Aligned_cols=107 Identities=23% Similarity=0.190 Sum_probs=64.7
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCCc-chHHHHhcc---------cCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQ-EILSLFSST---------SDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~-~~l~~~~~~---------~~~--~~ 754 (818)
|+|||+++++ .+||+|||+++...... ......||++|+||| ..+. ...+.|+.. ..+ ..
T Consensus 142 p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~ 220 (326)
T 2y0a_A 142 PENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 220 (326)
T ss_dssp GGGEEESCSSSSSCCEEECCCTTCEECCTTS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHEEEecCCCCCCCEEEEECCCCeECCCCC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 8999999888 89999999999875432 234567999999999 2222 233444321 111 11
Q ss_pred cccceec----ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILD----QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+. ....... .........+.+++..|++.+|++||++.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 221 TKQETLANVSAVNYEFED-EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp SHHHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CHHHHHHHHHhcCCCcCc-cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111111 1111000 001112234567888999999999999999986
No 292
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=6e-13 Score=143.69 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=12.3
Q ss_pred hcCCcCCCEEECCCCcCccCCcccc
Q 003465 501 IGNCSGLLNVTLSNNSLDGTIPLEM 525 (818)
Q Consensus 501 ~~~l~~L~~L~Ls~N~l~~~~p~~l 525 (818)
+...++|+.|||++|.++......+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3344555555555555554433333
No 293
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.18 E-value=6.8e-12 Score=131.08 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=65.5
Q ss_pred ccccccCCCCc--------ccccccccceeccCCCCCccccccccceeCCC---C-CC-cchHHHHhccc----------
Q 003465 694 FNNILLNSEFE--------AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---K-HP-QEILSLFSSTS---------- 750 (818)
Q Consensus 694 ~~NILLd~~~~--------~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~-~~-~~~l~~~~~~~---------- 750 (818)
|+|||++.++. +||+|||+++.... .....||++|+||| . .. +...+.|+...
T Consensus 141 p~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~ 216 (289)
T 4fvq_A 141 AKNILLIREEDRKTGNPPFIKLSDPGISITVLP----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGD 216 (289)
T ss_dssp GGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cceEEEecCCcccccccceeeeccCcccccccC----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCC
Confidence 89999999988 89999999865422 23456899999999 1 21 22333343211
Q ss_pred CCCccc-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCcCc
Q 003465 751 DPHITL-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYLDL 812 (818)
Q Consensus 751 ~~~~~~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~~~ 812 (818)
.+.... .......... +......+.+++..|++.+|++||++.||++.|+++-.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~ 278 (289)
T 4fvq_A 217 KPLSALDSQRKLQFYEDRHQL-----PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL 278 (289)
T ss_dssp CTTTTSCHHHHHHHHHTTCCC-----CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred CCccccchHHHHHHhhccCCC-----CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence 110000 0000000000 00112235567789999999999999999999999954443
No 294
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.17 E-value=6.7e-12 Score=131.55 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=65.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++++++.+||+|||+++.............||.+|+||| .. .....+.|+. ...+ .....+
T Consensus 143 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~ 222 (294)
T 2rku_A 143 LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE 222 (294)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 8999999999999999999998765444455678999999999 11 1212333321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.......... ..+......+.+++..|++.+|++||++.|+++
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 223 TYLRIKKNEY-SIPKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp HHHHHHTTCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHhhccC-CCccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 0000000000 001112234566778999999999999999986
No 295
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.17 E-value=4.5e-12 Score=132.63 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=68.2
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCC-cchHHHHhc----------ccCCC--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDPH--I 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~~--~ 754 (818)
|+||+++.++.+||+|||+++....... ......||++|+||| ..+ +...+.|+. ...+. .
T Consensus 149 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~ 228 (291)
T 1u46_A 149 ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL 228 (291)
T ss_dssp GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred hheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence 8999999999999999999998754432 223466889999999 122 112222321 11111 1
Q ss_pred cccceecccCCC-cCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCCc
Q 003465 755 TLTYILDQRISP-PKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPYL 810 (818)
Q Consensus 755 ~~~~~~d~~l~~-~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~~ 810 (818)
...+++...... ...+.+......+.+++..|++.+|++||++.+|++.|+++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 229 NGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp CHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 111111110000 00011222344567788899999999999999999999987543
No 296
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.17 E-value=1e-11 Score=131.59 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=70.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCC--ccccccccceeCCC----CCCcchHHHHhc----------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN--RTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~~--~~ 755 (818)
|+||+++.++.+||+|||+++........ .....||++|+||| ...+...+.|+. ...+. ..
T Consensus 176 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~ 255 (316)
T 2xir_A 176 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 255 (316)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred cceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc
Confidence 78999999999999999999877544322 23567899999999 222222233321 11111 11
Q ss_pred ccce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LTYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+. +........ +......+.+++..|++.+|++||++.||++.|+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 256 IDEEFCRRLKEGTRMRA---PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp CSHHHHHHHHHTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHhccCccCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 0110 111111111 1122345667888999999999999999999999873
No 297
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.16 E-value=2.1e-11 Score=128.75 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=61.3
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCCC---CC-cchHHHHh---------cccCCC--cccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPAK---HP-QEILSLFS---------STSDPH--ITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE~---~~-~~~l~~~~---------~~~~~~--~~~~ 757 (818)
|+||+++.++.+||+|||+++...... .......||.+|+|||. .+ ....+.|+ ....+. ....
T Consensus 162 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 241 (309)
T 2h34_A 162 PENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS 241 (309)
T ss_dssp GGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH
T ss_pred hHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH
Confidence 899999999999999999998765432 22345679999999991 11 11112222 111111 1100
Q ss_pred ---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-ChHHHHHHHccCCCc
Q 003465 758 ---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-TMQRVSQEFLKFPYL 810 (818)
Q Consensus 758 ---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-~m~~V~~~L~~~~~~ 810 (818)
..+........ .........+.+++..|++.+|++|| ++.++++.|+.+...
T Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 242 VMGAHINQAIPRPS-TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp HHHHHHHSCCCCGG-GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred HHHHHhccCCCCcc-ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 11111111100 01112233466778899999999999 999999999988433
No 298
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=133.37 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=68.6
Q ss_pred ccccccCCCC--cccccccccceeccCCCC-------CccccccccceeCCC---C-CCcchHHHHhc---------ccC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA---K-HPQEILSLFSS---------TSD 751 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE---~-~~~~~l~~~~~---------~~~ 751 (818)
|+|||++.++ .+||+|||+++.+..... ..+...||++|+||| . ..+...+.|+. ...
T Consensus 187 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~ 266 (352)
T 2jii_A 187 AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL 266 (352)
T ss_dssp GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 8999999998 999999999987753311 124458999999999 2 22222333321 111
Q ss_pred CCccc----cceec------ccCCCcCc--cchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 752 PHITL----TYILD------QRISPPKK--QKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 752 ~~~~~----~~~~d------~~l~~~~~--~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+.... ..+.. ........ .........+.+++..|++.+|++||++.+|+++|+++
T Consensus 267 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 334 (352)
T 2jii_A 267 PWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL 334 (352)
T ss_dssp TTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred CcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence 11100 00000 00000000 00001134566788899999999999999999999988
No 299
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.16 E-value=7.6e-12 Score=137.74 Aligned_cols=99 Identities=8% Similarity=-0.053 Sum_probs=62.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC----------Cc----chHHHHhc-----------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH----------PQ----EILSLFSS----------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~----------~~----~~l~~~~~----------- 748 (818)
|+|||+|.++.+||+|||+++..... ....+| ++|+|||.. .. ...+.|+.
T Consensus 239 p~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~ 314 (413)
T 3dzo_A 239 PVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD 314 (413)
T ss_dssp GGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCC
Confidence 99999999999999999999876433 344567 999999921 11 13334431
Q ss_pred ccCCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHH
Q 003465 749 TSDPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVS 801 (818)
Q Consensus 749 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~ 801 (818)
..+......+..+..+.... .....+.+++..|++.+|++||++.+++
T Consensus 315 ~Pf~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 315 LPNTDDAALGGSEWIFRSCK-----NIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp CCCCTTGGGSCSGGGGSSCC-----CCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCCCcchhhhHHHHHhhcc-----cCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 11222222233333332211 1124566777899999999999977764
No 300
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.16 E-value=7e-12 Score=133.37 Aligned_cols=109 Identities=20% Similarity=0.156 Sum_probs=51.0
Q ss_pred ccccccCCCC---cccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCc---
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~--- 754 (818)
|+|||++.+. .+||+|||+++............+||.+|+||| ..+.+ ..+.|+. ...+..
T Consensus 134 p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 213 (325)
T 3kn6_A 134 PENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHD 213 (325)
T ss_dssp GGGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC---
T ss_pred HHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCc
Confidence 8999997655 899999999998765544455678999999999 22222 3333431 111110
Q ss_pred ------cccceecccCCCcCc---cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 ------TLTYILDQRISPPKK---QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ------~~~~~~d~~l~~~~~---~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...++++....+... +........+.+++..|++.||++||++.||++
T Consensus 214 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 214 RSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ----CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred cccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 001111111111110 111223345677888999999999999999874
No 301
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.16 E-value=2.3e-11 Score=127.70 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=36.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++.............||.+|+|||
T Consensus 131 p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE 173 (299)
T 2r3i_A 131 PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 173 (299)
T ss_dssp GGGEEECTTSCEEECSTTHHHHHCCCSBCTTSCBCCCTTCCHH
T ss_pred HHHeEEcCCCCEEECcchhhhhccCCccccCcccccccccCcH
Confidence 8999999999999999999987754433344567899999999
No 302
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.16 E-value=2.4e-11 Score=131.27 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.9
Q ss_pred ccccccCC-CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++. ++.+||+|||+++...... ......||.+|+|||
T Consensus 159 p~NIll~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE 201 (360)
T 3e3p_A 159 PHNVLVNEADGTLKLCDFGSAKKLSPSE-PNVAYICSRYYRAPE 201 (360)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCCCTTS-CCCSTTSCGGGCCHH
T ss_pred HHHEEEeCCCCcEEEeeCCCceecCCCC-CcccccCCcceeCHH
Confidence 89999997 8999999999999775433 234457999999999
No 303
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.16 E-value=1.1e-11 Score=131.96 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=67.3
Q ss_pred ccccccC---CCCcccccccccceeccCCCC--CccccccccceeCCC----CCCcchHHHHhc----------ccCC--
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA----KHPQEILSLFSS----------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE----~~~~~~l~~~~~----------~~~~-- 752 (818)
|+|||++ ++..+||+|||+++....... ......||++|+||| .......+.|+. ...+
T Consensus 168 p~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 247 (327)
T 2yfx_A 168 ARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP 247 (327)
T ss_dssp GGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred HhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 8999999 455699999999987644322 234567899999999 222222233321 1111
Q ss_pred CccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 753 HITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 753 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
.....++.+..........+......+.+++..|++.+|++||++.+|++.|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~ 302 (327)
T 2yfx_A 248 SKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302 (327)
T ss_dssp TCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 1111111111111100011122334566788899999999999999999999877
No 304
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.16 E-value=2e-11 Score=126.69 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=95.8
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
+.|.....+| |.||+|.. .++..||+|..........+.|.+|+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 4566666677 89999996 45789999976654444455677776
Q ss_pred ----------------------------------------cc---cccccc---CCCCcccccccccceeccCCCCCccc
Q 003465 692 ----------------------------------------HV---FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 ----------------------------------------h~---~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||+ +.++.+||+|||+++...... ....
T Consensus 89 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~-~~~~ 167 (277)
T 3f3z_A 89 TGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK-MMRT 167 (277)
T ss_dssp CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS-CBCC
T ss_pred CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc-chhc
Confidence 22 899999 889999999999998775443 2344
Q ss_pred cccccceeCCC---CCCcchHHHHhc---------ccCC--Cccccce----ecccCCCcCccchHHHHHHHHHHHHhcc
Q 003465 726 IAGTYRYIAPA---KHPQEILSLFSS---------TSDP--HITLTYI----LDQRISPPKKQKIVQDIALASIVALACL 787 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~--~~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~ 787 (818)
..||.+|+||| ...+...+.|+. ...+ .....++ ......... .........+.+++..|+
T Consensus 168 ~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l 246 (277)
T 3f3z_A 168 KVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPE-KDWLNVSPQAESLIRRLL 246 (277)
T ss_dssp CCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHT
T ss_pred cCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCc-hhhhcCCHHHHHHHHHHc
Confidence 57999999999 222222233321 1111 1111111 111111100 000122345667888999
Q ss_pred CCCCCCCCChHHHHH
Q 003465 788 QSKPKSVPTMQRVSQ 802 (818)
Q Consensus 788 ~~~p~~RP~m~~V~~ 802 (818)
+.+|++||++.++++
T Consensus 247 ~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 247 TKSPKQRITSLQALE 261 (277)
T ss_dssp CSSTTTSCCHHHHTT
T ss_pred cCChhhCcCHHHHhc
Confidence 999999999999874
No 305
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.16 E-value=1.3e-11 Score=134.20 Aligned_cols=100 Identities=7% Similarity=-0.097 Sum_probs=62.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----C-----------CCcchHHHHhcc---------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----K-----------HPQEILSLFSST--------- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~-----------~~~~~l~~~~~~--------- 749 (818)
|+|||+|.++++||+|||+|+.... ..+..+| .+|+||| . ..+...+.|+..
T Consensus 234 p~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg 309 (377)
T 3byv_A 234 PVDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCA 309 (377)
T ss_dssp GGGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHS
T ss_pred HHHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHC
Confidence 8999999999999999999996432 2345678 9999999 2 222234444321
Q ss_pred c--CCCccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 S--DPHITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 ~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +......+.......... .....+.+++..|++.||++||++.|+++
T Consensus 310 ~~Pf~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 310 DLPITKDAALGGSEWIFRSCK-----NIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp SCCC------CCSGGGGSSCC-----CCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred CCCCcccccccchhhhhhhcc-----CCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 1 111111111221111111 11234567778999999999999999985
No 306
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.16 E-value=5.1e-11 Score=128.95 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=34.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .+..+||..|+|||
T Consensus 156 p~NIll~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE 195 (367)
T 1cm8_A 156 PGNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPE 195 (367)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTH
T ss_pred HHHEEEcCCCCEEEEeeecccccccc---cCcCcCCCCcCCHH
Confidence 89999999999999999999976432 34567999999999
No 307
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=8e-13 Score=142.74 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCCeeeccCCcCCCCcCccc-cCCCCCCEEEcCCCcccccCCcCc-----CCCCCCCEEeccCCcCCCC----CCcccC
Q 003465 317 TRLTTLKLFSNQINGSIPLGI-GNLENLERVDMSSNKLEGPIPLTI-----GDLTNLIYLDLSLNQLSGP----IPSTFG 386 (818)
Q Consensus 317 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~----~~~~~~ 386 (818)
++|+.|+|++|.++......+ ..+++|+.|+|++|.+.......+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432211111 122345555555555543222222 2344566666666655431 222334
Q ss_pred CCCCCCEEEccCCcCccc----CCccccCCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCccCC
Q 003465 387 HLTLLKFLNLNSNKLNGS----IPSELMNCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGMTP 454 (818)
Q Consensus 387 ~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p 454 (818)
.+++|++|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+...++|++|+|++|.|++...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 556666666666666532 233445556677777777766542 22334455667777777777665433
No 308
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.15 E-value=4.7e-12 Score=131.58 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=66.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~ 758 (818)
|+||++++++.+||+|||+++.............||.+|+||| ..+.+ ..+.|+. ...+ .....+
T Consensus 144 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 223 (279)
T 2w5a_A 144 PANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE 223 (279)
T ss_dssp GGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred hhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH
Confidence 7899999999999999999987654433234567999999999 22222 2233321 1111 111111
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
+......+.....+......+.+++..|++.+|++||++.||++.+...
T Consensus 224 ~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 224 LAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp HHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred HHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 1110000000001112234566788899999999999999999876644
No 309
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.15 E-value=1.8e-11 Score=132.27 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=96.1
Q ss_pred Hhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc--cchhhhhHhhh----------------------------
Q 003465 647 TEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR--SAFFKSFQNEA---------------------------- 691 (818)
Q Consensus 647 t~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~--~~~~~~f~~E~---------------------------- 691 (818)
.++|.....+| |.||+|.. .+|+.||||.+.... ....+.+.+|+
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45676667777 89999986 468999999765432 22334566666
Q ss_pred -------------------------------------------cc---ccccccCCCC---cccccccccceeccCCCCC
Q 003465 692 -------------------------------------------HV---FNNILLNSEF---EAFFGNFGVARLLNSDSSN 722 (818)
Q Consensus 692 -------------------------------------------h~---~~NILLd~~~---~~ki~DFGla~~~~~~~~~ 722 (818)
|+ |+|||++.+. .+||+|||+++..... ..
T Consensus 108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~-~~ 186 (362)
T 2bdw_A 108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS-EA 186 (362)
T ss_dssp CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC-CS
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC-cc
Confidence 22 8999998754 5999999999877533 23
Q ss_pred ccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Cccccce----ecccCCCcCccchHHHHHHHHHHH
Q 003465 723 RTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HITLTYI----LDQRISPPKKQKIVQDIALASIVA 783 (818)
Q Consensus 723 ~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la 783 (818)
....+||++|+||| ..+.+ ..+.|+. ...+ .....++ ......... +........+.+++
T Consensus 187 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li 265 (362)
T 2bdw_A 187 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPS-PEWDTVTPEAKSLI 265 (362)
T ss_dssp CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT-TGGGGSCHHHHHHH
T ss_pred cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHH
Confidence 34568999999999 22222 3344432 1111 1111111 111111111 11112234566788
Q ss_pred HhccCCCCCCCCChHHHHHH
Q 003465 784 LACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 784 ~~C~~~~p~~RP~m~~V~~~ 803 (818)
..|++.||++||++.|+++.
T Consensus 266 ~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 266 DSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHSCSSGGGSCCHHHHTTS
T ss_pred HHHcCCChhhCcCHHHHhcC
Confidence 89999999999999998753
No 310
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.15 E-value=1.5e-11 Score=131.99 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=63.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~ 758 (818)
|+|||+|.++.+||+|||+++..... ....+||++|+||| ..+.+ ..+.|+.. ..+ .....+
T Consensus 169 p~NIll~~~g~~kL~DFg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~ 245 (350)
T 1rdq_E 169 PENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ 245 (350)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred cceEEECCCCCEEEcccccceeccCC---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH
Confidence 89999999999999999999976432 33568999999999 22222 33444321 111 111111
Q ss_pred ----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-----hHHHHH
Q 003465 759 ----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-----MQRVSQ 802 (818)
Q Consensus 759 ----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-----m~~V~~ 802 (818)
+....+.. +......+.++...|++.+|++||+ +.||.+
T Consensus 246 ~~~~i~~~~~~~-----p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 246 IYEKIVSGKVRF-----PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHHCCCCC-----CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHcCCCCC-----CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 11222211 1112234566777999999999998 788764
No 311
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.15 E-value=1.7e-11 Score=131.40 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=36.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.++++||+|||+++............+||++|+|||
T Consensus 138 p~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE 180 (345)
T 3a8x_A 138 LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE 180 (345)
T ss_dssp GGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHH
T ss_pred HHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCcc
Confidence 8999999999999999999987544444455678999999999
No 312
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=132.58 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=63.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC------CCcc-hHHHHhccc---------CCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQE-ILSLFSSTS---------DPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~~-~l~~~~~~~---------~~~~--- 754 (818)
|+|||+|.++.+||+|||+|+.+.... ..+..+||++|+|||. .+.+ ..+.|+.+. .+..
T Consensus 143 p~NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~ 221 (384)
T 4fr4_A 143 PDNILLDEHGHVHITDFNIAAMLPRET-QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRS 221 (384)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTC-CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCT
T ss_pred HHHeEECCCCCEEEeccceeeeccCCC-ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCC
Confidence 899999999999999999999875432 3455789999999991 1122 344454211 1110
Q ss_pred --cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCC-hHHHH
Q 003465 755 --TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPT-MQRVS 801 (818)
Q Consensus 755 --~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-m~~V~ 801 (818)
...+++........ ..+......+..++..|++.+|++||+ +.+|.
T Consensus 222 ~~~~~~~~~~~~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 222 STSSKEIVHTFETTVV-TYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp TSCHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred CccHHHHHHHHhhccc-CCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 00011000000000 001112234667778999999999999 66665
No 313
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.15 E-value=2.2e-11 Score=126.82 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=63.5
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~--~~ 755 (818)
|+||+++.+.. +||+|||+++...... ......||.+|+||| ..+ +...+.|+. ...+. ..
T Consensus 133 p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 211 (284)
T 3kk8_A 133 PENLLLASKAKGAAVKLADFGLAIEVNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED 211 (284)
T ss_dssp GGGEEESSSSTTCCEEECCCTTCEECCSSC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HHHEEEecCCCCCcEEEeeceeeEEcccCc-cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc
Confidence 89999987665 9999999998765432 234567999999999 222 222333331 11111 11
Q ss_pred ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 212 QHRLYAQIKAGAYDYPS-PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhHHHHHHHhccccCCc-hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 001 1111111110 011122334667888999999999999999986
No 314
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.14 E-value=1.8e-11 Score=129.98 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC----CCC-cchHHHHhc---------ccCCCccccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHP-QEILSLFSS---------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~-~~~l~~~~~---------~~~~~~~~~~ 758 (818)
|+|||+| +++.+||+|||+++..... ......||.+|+||| ... ....+.|+. ...+.....+
T Consensus 177 p~NIll~~~~~~~kL~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~ 254 (320)
T 3a99_A 177 DENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE 254 (320)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred HHHEEEeCCCCCEEEeeCccccccccc--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh
Confidence 8999999 7899999999999987533 234467999999999 222 112333432 1111111112
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+......... .....+.+++..|++.+|++||++.||++
T Consensus 255 ~~~~~~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 255 IIRGQVFFRQ-----RVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHCCCCCSS-----CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhcccccccc-----cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 2222211111 11234567778999999999999999986
No 315
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.14 E-value=1.6e-11 Score=133.62 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=95.1
Q ss_pred hhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccccchhhhhHhhh-------------------------------
Q 003465 648 EDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGRSAFFKSFQNEA------------------------------- 691 (818)
Q Consensus 648 ~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~~~~~~~f~~E~------------------------------- 691 (818)
+.|.....|| |.||+|.. .+|+.||+|............+.+|+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 3455556677 89999986 46899999976554333444566666
Q ss_pred -----------------------------------------cc---ccccccCC--CCcccccccccceeccCCCCCccc
Q 003465 692 -----------------------------------------HV---FNNILLNS--EFEAFFGNFGVARLLNSDSSNRTL 725 (818)
Q Consensus 692 -----------------------------------------h~---~~NILLd~--~~~~ki~DFGla~~~~~~~~~~~~ 725 (818)
|+ |+|||++. ++.+||+|||+|+...... ....
T Consensus 131 ~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~-~~~~ 209 (387)
T 1kob_A 131 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-IVKV 209 (387)
T ss_dssp CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-CEEE
T ss_pred CCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc-ceee
Confidence 22 89999984 5789999999999875433 2334
Q ss_pred cccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccccc----eecccCCCcCccchHHHHHHHHHHHHhc
Q 003465 726 IAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITLTY----ILDQRISPPKKQKIVQDIALASIVALAC 786 (818)
Q Consensus 726 ~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C 786 (818)
.+||.+|+||| ..+.+ ..+.|+.. ..+ .....+ +......... .........+.+++..|
T Consensus 210 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~ 288 (387)
T 1kob_A 210 TTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDE-DAFSSVSPEAKDFIKNL 288 (387)
T ss_dssp ECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCS-STTTTSCHHHHHHHHTT
T ss_pred eccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc-cccccCCHHHHHHHHHH
Confidence 57999999999 22222 33344321 111 111011 1111111110 01112233456778899
Q ss_pred cCCCCCCCCChHHHHHH
Q 003465 787 LQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 787 ~~~~p~~RP~m~~V~~~ 803 (818)
++.||++||++.|+++.
T Consensus 289 L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 289 LQKEPRKRLTVHDALEH 305 (387)
T ss_dssp SCSSGGGSCCHHHHHTS
T ss_pred cCCChhHCcCHHHHhhC
Confidence 99999999999999863
No 316
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.14 E-value=9.1e-12 Score=133.18 Aligned_cols=104 Identities=24% Similarity=0.349 Sum_probs=65.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------cc--CCCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TS--DPHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~--~~~~~~~~ 758 (818)
++|||++.++.+||+|||+++.............||.+|+||| .. .....+.|+. .. +......+
T Consensus 169 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 248 (335)
T 2owb_A 169 LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE 248 (335)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred chhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence 8999999999999999999998765444455678999999999 22 1212333321 11 11111111
Q ss_pred e----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ....... +......+.+++..|++.||++||++.|+++
T Consensus 249 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 249 TYLRIKKNEYSI-----PKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHHTCCCC-----CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHhcCCCCC-----CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1 1111110 1111234556778999999999999999985
No 317
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.14 E-value=3.2e-11 Score=130.59 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=35.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....... ..+..+||.+|+|||
T Consensus 156 p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE 201 (364)
T 3qyz_A 156 PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPE 201 (364)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHH
T ss_pred hHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCH
Confidence 8999999999999999999997754322 234568999999999
No 318
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.14 E-value=3e-11 Score=130.55 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=33.4
Q ss_pred ccccccCC-------------------------CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-------------------------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-------------------------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++ ++.+||+|||+|+..... .....||.+|+|||
T Consensus 165 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE 229 (360)
T 3llt_A 165 PENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPE 229 (360)
T ss_dssp GGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHH
T ss_pred cccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcH
Confidence 89999986 889999999999875432 23467999999999
No 319
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.14 E-value=1.4e-11 Score=132.52 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=54.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++. ++.+||+|||+++...... .....+||++|+||| .. .+...+.|+. ...+ ...
T Consensus 176 p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 254 (349)
T 2w4o_A 176 PENLLYATPAPDAPLKIADFGLSKIVEHQV-LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER 254 (349)
T ss_dssp GGGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred cccEEEecCCCCCCEEEccCccccccCccc-ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 89999975 8999999999998764332 234567999999999 22 2223333431 1111 111
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ..+......... +...+....+.+++..|++.||++||++.|+++
T Consensus 255 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 255 GDQFMFRRILNCEYYFIS-PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp CHHHHHHHHHTTCCCCCT-TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ccHHHHHHHHhCCCccCC-chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 111111111100 001122345667788999999999999999986
No 320
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.14 E-value=1.6e-11 Score=129.71 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=57.4
Q ss_pred ccccccCCCCcccccccccceeccCCCC---CccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS---NRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~---~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~ 755 (818)
|+|||++.++.+||+|||+++.+..... ......||.+|+||| ..+.+ ..+.|+. ...+ ...
T Consensus 144 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~ 223 (311)
T 3ork_A 144 PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS 223 (311)
T ss_dssp GGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred HHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999999987754322 234567999999999 22222 3333431 1111 111
Q ss_pred ccceecccCCCcCcc---chHHHHHHHHHHHHhccCCCCCCCCChHHHH-HHHccC
Q 003465 756 LTYILDQRISPPKKQ---KIVQDIALASIVALACLQSKPKSVPTMQRVS-QEFLKF 807 (818)
Q Consensus 756 ~~~~~d~~l~~~~~~---~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~-~~L~~~ 807 (818)
..++........... ........+.+++..|++.+|++||++.+++ ..+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 224 PVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp HHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 111111111000000 0011234566788899999999999866655 444443
No 321
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.14 E-value=9.8e-12 Score=134.01 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCC-CCccccccccceeCCC--C---CC-cchHHHHhc---------ccCCCc---
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-SNRTLIAGTYRYIAPA--K---HP-QEILSLFSS---------TSDPHI--- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-~~~~~~~gt~gy~aPE--~---~~-~~~l~~~~~---------~~~~~~--- 754 (818)
|+|||+|.++++||+|||+++...... ......+||++|+||| . .. +...+.|+. ...+..
T Consensus 187 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~ 266 (355)
T 1vzo_A 187 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDG 266 (355)
T ss_dssp GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred HHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCC
Confidence 899999999999999999999764332 2234568999999999 1 11 123334431 111110
Q ss_pred ---cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHHH
Q 003465 755 ---TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQE 803 (818)
Q Consensus 755 ---~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~~ 803 (818)
...++......... ..+.+....+.+++..|++.+|++|| ++.|+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 267 EKNSQAEISRRILKSEP-PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp SCCCHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred ccchHHHHHHHHhccCC-CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 00111111100000 01112233456788899999999999 89998764
No 322
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.13 E-value=2.2e-11 Score=128.93 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Cccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~~-- 756 (818)
|+|||+|.++.+||+|||+++..... ....+||++|+||| ..+.+ ..+.|+.. ..+ ....
T Consensus 134 p~NIll~~~g~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 210 (318)
T 1fot_A 134 PENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK 210 (318)
T ss_dssp GGGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hheEEEcCCCCEEEeecCcceecCCc---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH
Confidence 89999999999999999999976432 34568999999999 22222 33444321 111 1111
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
..++...+..+ ......+.++...|++.+|++|| ++.||.+
T Consensus 211 ~~~~i~~~~~~~p-----~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 211 TYEKILNAELRFP-----PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHHHHHCCCCCC-----TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHhCCCCCC-----CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 11222222111 11123455677799999999999 8888873
No 323
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.13 E-value=8.7e-11 Score=124.72 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=64.6
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~--~~ 754 (818)
|+||++++++ .+||+|||+++...... ......||.+|+||| ..+ +...+.|+. ...+ ..
T Consensus 143 p~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 221 (321)
T 2a2a_A 143 PENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221 (321)
T ss_dssp GGGEEESCTTSSSCCEEECCCTTCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hHHEEEecCCCCcCCEEEccCccceecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence 8999999988 79999999999875432 234567999999999 222 223333431 1111 11
Q ss_pred cccceecccCCCc--Cc-cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISPP--KK-QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~~--~~-~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+....... .. .........+.+++..|++.+|++||++.|+++
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 222 TKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 1111111111100 00 000112234667888999999999999999986
No 324
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.13 E-value=1.2e-11 Score=131.30 Aligned_cols=107 Identities=20% Similarity=0.097 Sum_probs=66.1
Q ss_pred ccccccCC--CCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNS--EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~--~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++. ++.+||+|||+++...... ......||++|+||| ..+.+ ..+.|+.. .+.....
T Consensus 130 p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 208 (321)
T 1tki_A 130 PENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN 208 (321)
T ss_dssp GGGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred HHHEEEccCCCCCEEEEECCCCeECCCCC-ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH
Confidence 89999997 8899999999999875432 234567999999999 22222 33344321 1111111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++ ........ .........+.+++..|++.||++||++.|+++
T Consensus 209 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 209 QQIIENIMNAEYTFDE-EAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCh-hhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111 11111110 001122345667888999999999999999986
No 325
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.13 E-value=4.9e-11 Score=128.04 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=63.2
Q ss_pred ccccccCCCC--cccccccccceeccCCCC----CccccccccceeCCC--C---CCc-chHHHHhc---------ccCC
Q 003465 694 FNNILLNSEF--EAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--K---HPQ-EILSLFSS---------TSDP 752 (818)
Q Consensus 694 ~~NILLd~~~--~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~---~~~-~~l~~~~~---------~~~~ 752 (818)
|+|||++.+. .+||+|||+++.+..... ......||++|+||| . .+. ...+.|+. ...+
T Consensus 196 p~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p 275 (345)
T 3hko_A 196 PENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVP 275 (345)
T ss_dssp GGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred hhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 8999998776 899999999997743221 234567999999999 1 222 23333431 1111
Q ss_pred --Ccc----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 --HIT----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 --~~~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... ...++........ +........+.++...|++.+|++||++.|+++
T Consensus 276 f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 276 FPGVNDADTISQVLNKKLCFEN-PNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp SCCSSHHHHHHHHHHCCCCTTS-GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCChHHHHHHHHhcccccCC-cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 111 1122222222111 111122345667788999999999999999986
No 326
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.13 E-value=1.1e-11 Score=128.94 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=59.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccC--CCccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSD--PHITLTY 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~--~~~~~~~ 758 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .......+.|+. ... ......+
T Consensus 137 p~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 214 (279)
T 3fdn_A 137 PENLLLGSAGELKIADFGWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 214 (279)
T ss_dssp GGGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred hHhEEEcCCCCEEEEeccccccCCcc--cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH
Confidence 89999999999999999998654332 234567999999999 111112223321 111 1111111
Q ss_pred eecc--cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQ--RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~--~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ...... +......+.+++..|++.+|++||++.||++
T Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 215 TYKRISRVEFTF---PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HHHHHHHTCCCC---CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHhCCCCC---CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1000 000011 1112234556778999999999999999985
No 327
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.12 E-value=3.4e-11 Score=130.23 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=24.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+++++.+||+|||+++..... .+..+||..|+|||
T Consensus 160 p~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE 199 (367)
T 2fst_X 160 PSNLAVNEDCELKILDFGLARHTADE---MTGYVATRWYRAPE 199 (367)
T ss_dssp GGGEEECTTCCEEECC------------------CCCTTCCHH
T ss_pred HhhEEECCCCCEEEeecccccccccc---CCCcCcCcCccChH
Confidence 89999999999999999999875432 34567999999999
No 328
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.12 E-value=3.8e-11 Score=127.08 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=65.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCCcccc--c
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPHITLT--Y 758 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~~~~~--~ 758 (818)
|+||+++.++.+||+|||+++.............||.+|+||| ..+ ....+.|+. ...+..... +
T Consensus 153 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 232 (314)
T 3com_A 153 AGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR 232 (314)
T ss_dssp GGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred HHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH
Confidence 8999999999999999999988765444445567999999999 111 112233321 111111000 0
Q ss_pred e---ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 I---LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~---~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. +........ ..+......+.+++..|++.+|++||++.++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 233 AIFMIPTNPPPTF-RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHHSCCCCC-SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHhcCCCccc-CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0 000000000 011112345667888999999999999999974
No 329
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.12 E-value=1.4e-11 Score=136.04 Aligned_cols=98 Identities=21% Similarity=0.205 Sum_probs=71.2
Q ss_pred chHHHHHHHhhhhhhcccc----CcEEEEEcC-CCcEEEEEecccccc---chhhhhHhhh-------------------
Q 003465 639 AFEEIIRATEDLISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRS---AFFKSFQNEA------------------- 691 (818)
Q Consensus 639 ~~~~l~~at~~f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~---~~~~~f~~E~------------------- 691 (818)
.+.++...+++|.....|| |.||+|... +|+.||||++..... ...+.|.+|+
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 3455555667888888888 899999974 588999997643211 1122244444
Q ss_pred -----------------------------------------------------cc---ccccccCCCCccccccccccee
Q 003465 692 -----------------------------------------------------HV---FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 692 -----------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~~ 715 (818)
|+ |+|||+|.++++||+|||+|+.
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~ 224 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence 22 8999999999999999999987
Q ss_pred ccCCCC-CccccccccceeCCC
Q 003465 716 LNSDSS-NRTLIAGTYRYIAPA 736 (818)
Q Consensus 716 ~~~~~~-~~~~~~gt~gy~aPE 736 (818)
...+.. ..+..+||++|+|||
T Consensus 225 ~~~~~~~~~~~~~GT~~Y~APE 246 (437)
T 4aw2_A 225 LMEDGTVQSSVAVGTPDYISPE 246 (437)
T ss_dssp CCTTSCEECCSCCSCGGGCCHH
T ss_pred cccCCCcccccccCCcCeeChH
Confidence 755433 234578999999999
No 330
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.12 E-value=2.1e-11 Score=125.87 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc----hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE----ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~----~l~~~~~---------~~~~--~~~ 755 (818)
|+||++|+++.+||+|||++.... .....||+.|+||| ..+.. ..+.|+. ...+ ...
T Consensus 141 p~Nil~~~~~~~~l~~~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 215 (271)
T 3kmu_A 141 SRSVMIDEDMTARISMADVKFSFQ-----SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS 215 (271)
T ss_dssp GGGEEECTTSCEEEEGGGSCCTTS-----CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC
T ss_pred cceEEEcCCcceeEEeccceeeec-----ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence 799999999999999999876432 22357899999999 21111 2333431 1111 111
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
.. .+......... +......+.+++..|++.+|++||++.+|++.|+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 216 NMEIGMKVALEGLRPTI---PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp HHHHHHHHHHSCCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 11 11111111111 1223345667888999999999999999999999874
No 331
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.12 E-value=5.1e-11 Score=129.84 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=33.1
Q ss_pred cccccc--CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL--NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL--d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ |.++.+||+|||+|+..... .....||..|+|||
T Consensus 187 p~NIll~~~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE 228 (382)
T 2vx3_A 187 PENILLCNPKRSAIKIVDFGSSCQLGQR---IYQYIQSRFYRSPE 228 (382)
T ss_dssp GGGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHH
T ss_pred cccEEEecCCCCcEEEEeccCceecccc---cccccCCccccChH
Confidence 899999 55888999999999977432 33467999999999
No 332
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.12 E-value=5.6e-11 Score=126.71 Aligned_cols=42 Identities=12% Similarity=0.307 Sum_probs=34.4
Q ss_pred ccccccCCCC-cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF-EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~-~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++ .+||+|||+|+....... .....||.+|+|||
T Consensus 158 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~~~~y~aPE 200 (330)
T 3nsz_A 158 PHNVMIDHEHRKLRLIDWGLAEFYHPGQE-YNVRVASRYFKGPE 200 (330)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSCCSCGGGCCHH
T ss_pred HHHEEEcCCCCEEEEEeCCCceEcCCCCc-cccccccccccChh
Confidence 8999999776 899999999997754432 33457999999999
No 333
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.11 E-value=1.8e-11 Score=133.94 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC-CccccccccceeCCC---CCC----c-chHHHHhcc-----------cCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-NRTLIAGTYRYIAPA---KHP----Q-EILSLFSST-----------SDPH 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~gy~aPE---~~~----~-~~l~~~~~~-----------~~~~ 753 (818)
|+|||+|.++++||+|||+|+....... .....+||++|+||| ..+ . ...+.|+.. .+..
T Consensus 196 p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~ 275 (410)
T 3v8s_A 196 PDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA 275 (410)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC
Confidence 8999999999999999999998754432 234678999999999 222 1 244455421 1111
Q ss_pred cccc----ceeccc--CCCcCccchHHHHHHHHHHHHhccCCCCCC--CCChHHHHHH
Q 003465 754 ITLT----YILDQR--ISPPKKQKIVQDIALASIVALACLQSKPKS--VPTMQRVSQE 803 (818)
Q Consensus 754 ~~~~----~~~d~~--l~~~~~~~~~~~~~~~~~la~~C~~~~p~~--RP~m~~V~~~ 803 (818)
.... .++... +..+. .......+..++..|++.+|++ ||++.||.+.
T Consensus 276 ~~~~~~~~~i~~~~~~~~~p~---~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 276 DSLVGTYSKIMNHKNSLTFPD---DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp SSHHHHHHHHHTHHHHCCCCT---TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CChhhHHHHHHhccccccCCC---cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 1111 111111 11111 0011233455667999999988 9999999853
No 334
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.11 E-value=2.5e-11 Score=125.83 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC--cchHHHHhc---------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP--QEILSLFSS---------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~--~~~l~~~~~---------~~~~--~~~~~ 757 (818)
|+||+++.++.+||+|||+++...... ......||.+|+||| ..+ ....+.|+. ...+ .....
T Consensus 139 p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~ 217 (276)
T 2h6d_A 139 PENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP 217 (276)
T ss_dssp GGGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred hhhEEECCCCCEEEeecccccccCCCc-ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH
Confidence 899999999999999999998764432 223457999999999 121 122333431 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
++.+....... ..+......+.+++..|++.+|++||++.||++.
T Consensus 218 ~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 218 TLFKKIRGGVF-YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHhhcCcc-cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 11110000000 0011122345678889999999999999999863
No 335
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.11 E-value=2.4e-11 Score=129.35 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~---------~~~~~--~~ 755 (818)
|+|||++. ++.+||+|||+++...... ......||++|+||| ..+ +...+.|+. ...+. ..
T Consensus 159 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~ 237 (327)
T 3lm5_A 159 PQNILLSSIYPLGDIKIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED 237 (327)
T ss_dssp GGGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred hHHEEEecCCCCCcEEEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 89999998 7899999999999875432 234467999999999 222 223333331 11111 11
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.. .+......... +........+.+++..|++.+|++||++.|+++.
T Consensus 238 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 238 NQETYLNISQVNVDYSE-ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp HHHHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred chHHHHHHHhcccccCc-hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 00 01111111111 1112233456678889999999999999999853
No 336
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.11 E-value=2.3e-11 Score=137.27 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCCcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPHIT----- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~~~----- 755 (818)
|+|||+|.++++||+|||+++.+..........+||++|+||| ..+.+ ..+.|+. ...+...
T Consensus 317 P~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~ 396 (543)
T 3c4z_A 317 PENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV 396 (543)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC
T ss_pred hHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch
Confidence 8999999999999999999998765544455668999999999 22222 3444432 1111110
Q ss_pred -ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 756 -LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 756 -~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
..++....+.... ..+......+..++..|++.+|++||++
T Consensus 397 ~~~~~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 397 ENKELKQRVLEQAV-TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred hHHHHHHHHhhccc-CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 0111111110000 0011122345567779999999999976
No 337
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.10 E-value=1.3e-11 Score=129.80 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=87.6
Q ss_pred hhhhcccc----CcEEEEEcC-CCcEEEEEeccccccchhhhhHhhh---------------------------------
Q 003465 650 LISDIALE----LDVTAAFTK-HGCLVAEYGSEQGRSAFFKSFQNEA--------------------------------- 691 (818)
Q Consensus 650 f~~~~~ig----g~vy~~~~~-~g~~vAvK~~~~~~~~~~~~f~~E~--------------------------------- 691 (818)
|.....+| |.||+|... +|..||+|..........+.|.+|+
T Consensus 21 y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 100 (302)
T 2j7t_A 21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 100 (302)
T ss_dssp EEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTT
T ss_pred eeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCC
Confidence 44444565 899999964 5899999976655444455666666
Q ss_pred ---------------------------------------cc---ccccccCCCCcccccccccceeccCCCCCccccccc
Q 003465 692 ---------------------------------------HV---FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGT 729 (818)
Q Consensus 692 ---------------------------------------h~---~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt 729 (818)
|+ |+||+++.++.+||+|||+++.............||
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 180 (302)
T 2j7t_A 101 GAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGT 180 (302)
T ss_dssp EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CC
T ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCC
Confidence 22 899999999999999999986543221122345799
Q ss_pred cceeCCCC--------CCcc-hHHHHhc---------ccCCC--ccccce----ecccCCCcCccchHHHHHHHHHHHHh
Q 003465 730 YRYIAPAK--------HPQE-ILSLFSS---------TSDPH--ITLTYI----LDQRISPPKKQKIVQDIALASIVALA 785 (818)
Q Consensus 730 ~gy~aPE~--------~~~~-~l~~~~~---------~~~~~--~~~~~~----~d~~l~~~~~~~~~~~~~~~~~la~~ 785 (818)
.+|+|||. .+.+ ..+.|+. ...+. ....+. ........ ..+......+.+++..
T Consensus 181 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~ 258 (302)
T 2j7t_A 181 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTL--LTPSKWSVEFRDFLKI 258 (302)
T ss_dssp GGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--SSGGGSCHHHHHHHHH
T ss_pred hhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCccc--CCccccCHHHHHHHHH
Confidence 99999991 1111 2333431 11111 100000 00000000 0112223456678889
Q ss_pred ccCCCCCCCCChHHHHH
Q 003465 786 CLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 786 C~~~~p~~RP~m~~V~~ 802 (818)
|++.+|++||++.++++
T Consensus 259 ~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 259 ALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HSCSCTTTSCCHHHHTT
T ss_pred HcccChhhCCCHHHHhc
Confidence 99999999999999875
No 338
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.4e-11 Score=131.07 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC--------CC-cchHHHHhc---------ccCCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK--------HP-QEILSLFSS---------TSDPH-- 753 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~--------~~-~~~l~~~~~---------~~~~~-- 753 (818)
|+||+++.++.+||+|||+++.............||.+|+|||. .+ +...+.|+. ...+.
T Consensus 157 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 236 (326)
T 2x7f_A 157 GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 236 (326)
T ss_dssp GGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence 89999999999999999999876543333345679999999991 11 112333331 11111
Q ss_pred ccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 ITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 ~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+ +......... .......+.+++..|++.+|++||++.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 237 MHPMRALFLIPRNPAPRLK---SKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp SCHHHHHHHHHHSCCCCCS---CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CcHHHHHHHhhcCccccCC---ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00000 0000000000 0111234566777999999999999999986
No 339
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.10 E-value=5.8e-11 Score=123.03 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCC--CCccccccccceeCCC---CCCc--chHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--SNRTLIAGTYRYIAPA---KHPQ--EILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--~~~~~~~gt~gy~aPE---~~~~--~~l~~~~~---------~~~~~--~~ 755 (818)
|+||+++.++.+||+|||+++...... .......||.+|+||| ..+. ...+.|+. ...+. ..
T Consensus 133 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 212 (276)
T 2yex_A 133 PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (276)
T ss_dssp GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred hHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence 899999999999999999998764332 2234567999999999 2221 12333431 11111 00
Q ss_pred c-----cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 L-----TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~-----~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ..+........ ........+.++...|++.+|++||++.||++
T Consensus 213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 213 DSCQEYSDWKEKKTYLN---PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp TTSHHHHHHHTTCTTST---TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hHHHHHHHhhhcccccC---chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0 00111111000 01122334567888999999999999999875
No 340
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.10 E-value=4.9e-11 Score=124.28 Aligned_cols=104 Identities=24% Similarity=0.255 Sum_probs=57.8
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC--C-CCcchHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K-HPQEILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~-~~~~~l~~~~~---------~~~~--~~~~ 756 (818)
|+|||+ +.++.+||+|||+++...... ......||.+|+||| + ..+...+.|+. ...+ ....
T Consensus 152 p~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~ 230 (285)
T 3is5_A 152 PENILFQDTSPHSPIKIIDFGLAELFKSDE-HSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL 230 (285)
T ss_dssp GGGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCCCEEEEeeecceecCCcc-cCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCH
Confidence 899999 556889999999998765432 234567999999999 2 22222333331 1111 1111
Q ss_pred cceec------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILD------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++.. +...... ......+.+++..|++.+|++||++.||++
T Consensus 231 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 231 EEVQQKATYKEPNYAVEC----RPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHHHCCCCCCC------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHhhhccCCccccccc----CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11110 1111000 001234567788999999999999999985
No 341
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.10 E-value=3.9e-11 Score=126.31 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCC--Ccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDP--HIT 755 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~--~~~ 755 (818)
|+||++ ++++.+||+|||+++..... ......||.+|+||| ..+.+ ..+.|+. ...+ ...
T Consensus 134 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 211 (304)
T 2jam_A 134 PENLLYLTPEENSKIMITDFGLSKMEQNG--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET 211 (304)
T ss_dssp GGGCEESSSSTTCCEEBCSCSTTCCCCCB--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred HHHEEEecCCCCCCEEEccCCcceecCCC--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence 899999 88999999999999865322 234457999999999 22222 3333431 1111 111
Q ss_pred cc----ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LT----YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~----~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.. .+......... +........+.++...|++.+|++||++.|+++
T Consensus 212 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 212 ESKLFEKIKEGYYEFES-PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHHHCCCCCCT-TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHcCCCCCCc-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11 11111111110 111122345667888999999999999999985
No 342
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.10 E-value=8.1e-11 Score=127.44 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=67.0
Q ss_pred ccccccCC-----------CCcccccccccceeccCC--CCCccccccccceeCCC---CCCcc-hHHHHhc--------
Q 003465 694 FNNILLNS-----------EFEAFFGNFGVARLLNSD--SSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~-----------~~~~ki~DFGla~~~~~~--~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~-------- 748 (818)
|+|||++. ++.+||+|||+|+.+... ....+..+||.+|+||| ..+.+ ..+.|+.
T Consensus 200 p~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell 279 (365)
T 3e7e_A 200 PDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCML 279 (365)
T ss_dssp GGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHH
T ss_pred HHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHH
Confidence 89999999 899999999999876532 22345678999999999 33222 3344432
Q ss_pred -ccCCC---ccccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHccC
Q 003465 749 -TSDPH---ITLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSV-PTMQRVSQEFLKF 807 (818)
Q Consensus 749 -~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~R-P~m~~V~~~L~~~ 807 (818)
...+. ......++..+.... ..+.+. ++...|++.+|.+| |++.++.+.|+++
T Consensus 280 tg~~pf~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~l~~~p~~r~~~~~~l~~~l~~~ 337 (365)
T 3e7e_A 280 FGTYMKVKNEGGECKPEGLFRRLP---HLDMWN---EFFHVMLNIPDCHHLPSLDLLRQKLKKV 337 (365)
T ss_dssp HSSCCCEEEETTEEEECSCCTTCS---SHHHHH---HHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred hCCCccccCCCCceeechhccccC---cHHHHH---HHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence 11111 001111222222221 233333 45558889999998 6788888888765
No 343
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.10 E-value=6e-11 Score=128.05 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=55.3
Q ss_pred ccccccCCCCc--ccccccccceeccCCCCCccccccccceeCCC---CCCcc--hHHHHhc---------ccCCCcc--
Q 003465 694 FNNILLNSEFE--AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE--ILSLFSS---------TSDPHIT-- 755 (818)
Q Consensus 694 ~~NILLd~~~~--~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~--~l~~~~~---------~~~~~~~-- 755 (818)
|+|||++.+.. +||+|||+|+...... .....+||++|+||| ..... ..+.|+. ...+...
T Consensus 144 p~Nill~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~ 222 (361)
T 3uc3_A 144 LENTLLDGSPAPRLKICDFGYSKSSVLHS-QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPE 222 (361)
T ss_dssp GGGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---
T ss_pred HHHEEEcCCCCceEEEeecCccccccccC-CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCc
Confidence 89999998776 9999999998543322 233457999999999 22221 1344432 1111110
Q ss_pred ----ccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 ----LTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ----~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... +......... .......+.+++..|++.+|++||++.|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 223 EPRDYRKTIQRILSVKYSIPD---DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp -CCCHHHHHHHHHTTCCCCCT---TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred cHHHHHHHHHHHhcCCCCCCC---cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 001 1111111111 11122345677889999999999999999853
No 344
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.10 E-value=5.1e-11 Score=129.29 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=25.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+|+...... ..+..+||.+|+|||
T Consensus 155 p~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE 196 (371)
T 2xrw_A 155 PSNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPE 196 (371)
T ss_dssp GGGEEECTTSCEEECCCCC-----------------CTTCCHH
T ss_pred HHHEEEcCCCCEEEEEeeccccccccc-ccCCceecCCccCHH
Confidence 899999999999999999998764332 234567999999999
No 345
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.10 E-value=6.1e-11 Score=128.63 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... .+...||.+|+|||
T Consensus 172 p~NIll~~~~~~kL~Dfg~a~~~~~~---~~~~~~t~~y~aPE 211 (371)
T 4exu_A 172 PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPE 211 (371)
T ss_dssp GGGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHH
T ss_pred HHHeEECCCCCEEEEecCcccccccC---cCCcccCccccCHH
Confidence 89999999999999999999865432 34467899999999
No 346
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.10 E-value=2e-11 Score=127.60 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=55.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC-------C-CcchHHHHhc---------ccCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-------H-PQEILSLFSS---------TSDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-------~-~~~~l~~~~~---------~~~~~~-- 754 (818)
|+||++|.++.+||+|||+++....... .....||.+|+|||. . .+...+.|+. ...+..
T Consensus 138 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (290)
T 3fme_A 138 PSNVLINALGQVKMCDFGISGYLVDDVA-KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW 216 (290)
T ss_dssp GGGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred HHHEEECCCCCEEEeecCCccccccccc-ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc
Confidence 8999999999999999999987654322 233579999999992 1 1112333331 111111
Q ss_pred -c----ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -T----LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~----~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ....+........ .......+.+++..|++.+|++||++.||++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 217 GTPFQQLKQVVEEPSPQLP---ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp SCHHHHHHHHHHSCCCCCC---TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CchHHHHHHHhccCCCCcc---cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 0 1111111111111 1112334667888999999999999999975
No 347
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.10 E-value=6.5e-11 Score=123.43 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=60.6
Q ss_pred ccccccC-------------------CCCcccccccccceeccCCCCCccccccccceeCCC---CC-Cc-chHHHHhcc
Q 003465 694 FNNILLN-------------------SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQ-EILSLFSST 749 (818)
Q Consensus 694 ~~NILLd-------------------~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~-~~l~~~~~~ 749 (818)
|+|||++ ....+||+|||+++...... ...||.+|+||| .. .. ...+.|+..
T Consensus 143 p~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG 218 (289)
T 1x8b_A 143 PSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALA 218 (289)
T ss_dssp GGGEEEC--------------------CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHH
Confidence 8999998 45589999999998765332 245999999999 21 11 233344321
Q ss_pred c----------CCC-c-cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 S----------DPH-I-TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 ~----------~~~-~-~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
. ... . ....+........ +......+.+++..|++.+|++||++.|+++
T Consensus 219 ~il~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 219 LTVVCAAGAEPLPRNGDQWHEIRQGRLPRI----PQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHTTCCCCCSSSHHHHHHHTTCCCCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHhcCCCCCcchhHHHHHHcCCCCCC----CcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1 110 0 0111111111111 1112334667778999999999999999875
No 348
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.09 E-value=2.5e-11 Score=128.45 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--CC------------Ccc-hHHHHhc--------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--KH------------PQE-ILSLFSS-------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~~------------~~~-~l~~~~~-------- 748 (818)
|+|||+++ +.+||+|||+++....... ......||.+|+||| .. +.+ ..+.|+.
T Consensus 155 p~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~ 233 (313)
T 3cek_A 155 PANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT 233 (313)
T ss_dssp GGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHH
T ss_pred cccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHH
Confidence 89999975 8999999999987754322 223567999999999 11 111 2333431
Q ss_pred -ccCCCcc-------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 749 -TSDPHIT-------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 749 -~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+... ...++++...... +......+.+++..|++.+|++||++.||++
T Consensus 234 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 234 YGKTPFQQIINQISKLHAIIDPNHEIEF---PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HSSCTTTTCCSHHHHHHHHHCTTSCCCC---CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hCCCchhhHHHHHHHHHHHHhcccccCC---cccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111110 1122232222211 1111234566777999999999999999985
No 349
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.09 E-value=9.3e-11 Score=124.38 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=70.2
Q ss_pred cccccc----CCCCcccccccccceeccCCCCCccccccccceeCCCC-----------CCcc-hHHHHhc---------
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----------HPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----------~~~~-~l~~~~~--------- 748 (818)
|+|||+ |.++.+||+|||+|+....... .....||.+|+|||. .+.+ ..+.|+.
T Consensus 140 p~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~ 218 (319)
T 4euu_A 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ-FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218 (319)
T ss_dssp GGGEEEEECTTSCEEEEECCCTTCEECCTTCC-BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHH
T ss_pred HHHEEEeccCCCCceEEEccCCCceecCCCCc-eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHh
Confidence 899999 8999999999999998755432 334679999999991 1211 2333321
Q ss_pred ccCCCc------cccce----e---------------------cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 749 TSDPHI------TLTYI----L---------------------DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 749 ~~~~~~------~~~~~----~---------------------d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
...+.. ...++ + ++.+.... .........+..+...|++.||++||++
T Consensus 219 g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~~L~~dP~~R~s~ 297 (319)
T 4euu_A 219 GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC-SLSRGLQVLLTPVLANILEADQEKCWGF 297 (319)
T ss_dssp SSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTC-SSCHHHHHHHHHHHHHHSCCCTTTSCCH
T ss_pred CCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCccc-ccchhHHHHhHHHHHHhccCChhhhccH
Confidence 111100 00000 0 00111111 1234445566778889999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.|+++.....
T Consensus 298 ~ell~h~~d~ 307 (319)
T 4euu_A 298 DQFFAETSDI 307 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhhccHHH
Confidence 9999988755
No 350
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.09 E-value=6.7e-11 Score=127.41 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccccccCCCCcccccccccceeccCCCC----------CccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS----------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~----------~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++....... .....+||.+|+|||
T Consensus 140 p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 192 (353)
T 2b9h_A 140 PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPE 192 (353)
T ss_dssp GGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHH
T ss_pred HHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCe
Confidence 8999999999999999999998753211 123457999999999
No 351
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=2e-10 Score=123.38 Aligned_cols=89 Identities=27% Similarity=0.256 Sum_probs=41.3
Q ss_pred ccCCCcCceecccC-cccccCCCCCCCCCCCCcEEECcCCCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCC
Q 003465 121 IGALSKLQILDLSH-NNLTGTIPSKLGNLNNLVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQL 199 (818)
Q Consensus 121 ~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 199 (818)
|..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.+|++|++|+|++|.+++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444455555543 444444444444555555555555555444444444555555555555554433333333332 4
Q ss_pred cEEEcccCcCC
Q 003465 200 TTLKLFSNQIN 210 (818)
Q Consensus 200 ~~L~L~~n~l~ 210 (818)
++|+|.+|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 44444444443
No 352
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.09 E-value=4.4e-11 Score=127.42 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=49.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC--------CcchHHHHhc---------ccCCCc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH--------PQEILSLFSS---------TSDPHI-- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~--------~~~~l~~~~~---------~~~~~~-- 754 (818)
|+|||++.++.+||+|||+++...... ......||.+|+|||.. .+...+.|+. ...+..
T Consensus 154 p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 232 (327)
T 3aln_A 154 PSNILLDRSGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW 232 (327)
T ss_dssp GGGEEEETTTEEEECCCSSSCC-------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHEEEcCCCCEEEccCCCceeccccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 899999999999999999998764432 22345799999999932 1112333321 111111
Q ss_pred -cccceecccCCCcC----ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 -TLTYILDQRISPPK----KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 -~~~~~~d~~l~~~~----~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+.....+.. ..........+.+++..|++.+|++||++.+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 233 NSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp -------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred chHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 01111111111110 0001123345677888999999999999999874
No 353
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=133.43 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=71.7
Q ss_pred cchHHHHHHHhhhhhhcccc----CcEEEEEc-CCCcEEEEEeccccc---cchhhhhHhhh------------------
Q 003465 638 IAFEEIIRATEDLISDIALE----LDVTAAFT-KHGCLVAEYGSEQGR---SAFFKSFQNEA------------------ 691 (818)
Q Consensus 638 ~~~~~l~~at~~f~~~~~ig----g~vy~~~~-~~g~~vAvK~~~~~~---~~~~~~f~~E~------------------ 691 (818)
+.+++....+++|.....|| |.||+|.. .+|+.||||.+.... ....+.+.+|.
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 34445445567787777888 89999996 469999999765321 11223344444
Q ss_pred ------------------------------------------------------cc---ccccccCCCCcccccccccce
Q 003465 692 ------------------------------------------------------HV---FNNILLNSEFEAFFGNFGVAR 714 (818)
Q Consensus 692 ------------------------------------------------------h~---~~NILLd~~~~~ki~DFGla~ 714 (818)
|+ |+|||+|.++++||+|||+++
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 22 899999999999999999999
Q ss_pred eccCCCCC-ccccccccceeCCC
Q 003465 715 LLNSDSSN-RTLIAGTYRYIAPA 736 (818)
Q Consensus 715 ~~~~~~~~-~~~~~gt~gy~aPE 736 (818)
....+... ....+||++|+|||
T Consensus 211 ~~~~~~~~~~~~~~Gt~~Y~APE 233 (412)
T 2vd5_A 211 KLRADGTVRSLVAVGTPDYLSPE 233 (412)
T ss_dssp ECCTTSCEECSSCCSCGGGCCHH
T ss_pred eccCCCccccceeccccCcCCHH
Confidence 87554332 34568999999999
No 354
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.08 E-value=6.7e-11 Score=125.86 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=34.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||
T Consensus 148 p~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE 189 (326)
T 1blx_A 148 PQNILVTSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPE 189 (326)
T ss_dssp GGGEEECTTCCEEECSCCSCCCCCGGG-GGCCCCCCCTTCCHH
T ss_pred HHHeEEcCCCCEEEecCcccccccCCC-CccccccccceeCHH
Confidence 899999999999999999998764322 234567999999999
No 355
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.08 E-value=4.9e-11 Score=125.62 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred ccccccCCCCcccccccccceeccCCCC--CccccccccceeCCC--C--CC--cchHHHHhcc---------c--CCCc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS--NRTLIAGTYRYIAPA--K--HP--QEILSLFSST---------S--DPHI 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~gy~aPE--~--~~--~~~l~~~~~~---------~--~~~~ 754 (818)
|+||+++.++.+||+|||+++....... ......||.+|+||| . .. ....+.|+.. . +...
T Consensus 137 p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (305)
T 2wtk_C 137 PGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD 216 (305)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 8999999999999999999997753322 224567999999999 1 11 1123334311 1 1111
Q ss_pred cccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 755 TLTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 755 ~~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
...++......... ..+......+.+++..|++.||++||++.|+++.
T Consensus 217 ~~~~~~~~i~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 217 NIYKLFENIGKGSY-AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp SHHHHHHHHHHCCC-CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred hHHHHHHHHhcCCC-CCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 11111110000000 0011123345677889999999999999999953
No 356
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.08 E-value=4.2e-11 Score=125.84 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=59.7
Q ss_pred ccccccCCCCcccccccccceeccCCC--------------CCccccccccceeCCC---CC--CcchHHHHhcc-----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS--------------SNRTLIAGTYRYIAPA---KH--PQEILSLFSST----- 749 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~--------------~~~~~~~gt~gy~aPE---~~--~~~~l~~~~~~----- 749 (818)
|+|||++.++.+||+|||+++...... .......||..|+||| .. .....+.|+..
T Consensus 144 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~ 223 (303)
T 1zy4_A 144 PMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFE 223 (303)
T ss_dssp GGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHH
T ss_pred HHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHH
Confidence 899999999999999999998764321 1224567999999999 11 22233334321
Q ss_pred ---cCCCc-cccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 750 ---SDPHI-TLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 750 ---~~~~~-~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+... ...+ +.......+. .........+.+++..|++.||++||++.++++.
T Consensus 224 l~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 224 MIYPFSTGMERVNILKKLRSVSIEFPP-DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHSCCSSHHHHHHHHHHHHSTTCCCCT-TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHhccCCchhHHHHHHhccccccccCc-cccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 11100 0000 1111111000 1122233456678889999999999999999863
No 357
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.08 E-value=7.8e-11 Score=128.97 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=59.4
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCC--Ccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDP--HIT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~--~~~ 755 (818)
++|||+|. ++.+||+|||+++...... ..+..+||.+|+||| ....+ ..+.|+.. ..+ ...
T Consensus 189 p~Nill~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 267 (400)
T 1nxk_A 189 PENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 267 (400)
T ss_dssp GGGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCT
T ss_pred cceEEEecCCCCccEEEEecccccccCCCC-ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence 89999998 7899999999999764332 234568999999999 22222 33444321 111 110
Q ss_pred ccc--------eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 756 LTY--------ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 756 ~~~--------~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
... +......... .........+.+++..|++.||++||++.||++.
T Consensus 268 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 268 GLAISPGMKTRIRMGQYEFPN-PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TCSSCCSHHHHHHHTCCCCCT-TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccccHHHHHHHHcCcccCCC-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 000 1111111110 0111223456678889999999999999999863
No 358
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.08 E-value=4.3e-11 Score=129.34 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=32.3
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||+++..... ......||.+|+|||
T Consensus 160 p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~gt~~y~aPE 200 (360)
T 3eqc_A 160 PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPE 200 (360)
T ss_dssp GGGEEECTTCCEEECCCCCCHHHHHH--C----CCCCTTCCHH
T ss_pred HHHEEECCCCCEEEEECCCCcccccc--cccCCCCCCCeECHH
Confidence 89999999999999999999765332 223457999999999
No 359
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=123.44 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=65.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC----CCCcc-hHHHHhc---------ccCCCccccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQE-ILSLFSS---------TSDPHITLTY 758 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~-~l~~~~~---------~~~~~~~~~~ 758 (818)
++||+++ +++.+||+|||+++..... ......||.+|+||| ..... ..+.|+. ...+.....+
T Consensus 167 p~Nil~~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 244 (312)
T 2iwi_A 167 DENILIDLRRGCAKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE 244 (312)
T ss_dssp GGGEEEETTTTEEEECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH
T ss_pred hhhEEEeCCCCeEEEEEcchhhhcccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH
Confidence 8999999 8999999999999987543 234567999999999 22111 2333431 1122111222
Q ss_pred eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 759 ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+...... ......+.+++..|++.+|++||++.||++
T Consensus 245 ~~~~~~~~~-----~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 245 ILEAELHFP-----AHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHHTCCCCC-----TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HhhhccCCc-----ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 222222211 112234567788999999999999999987
No 360
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.07 E-value=2.9e-11 Score=129.62 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=64.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC--------CCcchHHHHhc---------ccCCCcc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK--------HPQEILSLFSS---------TSDPHIT- 755 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~--------~~~~~l~~~~~---------~~~~~~~- 755 (818)
|+|||++.++.+||+|||+++..... ...+..+||.+|+|||. ..+...+.|+. ...+...
T Consensus 182 p~NIl~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~ 260 (340)
T 3an0_A 182 PSNVLINALGQVKMCDFGISGYLVDS-VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW 260 (340)
T ss_dssp STTEEECSTTCEEECCCSHHHHHSCH-HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCC
T ss_pred HHHEEECCCCCEEEeeCCCceecccc-cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence 89999999999999999999876432 11234579999999992 11113333431 1111110
Q ss_pred ------ccceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 ------LTYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ------~~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
+.+++........ .......+.+++..|++.+|++||++.||++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 261 GTPFQQLKQVVEEPSPQLP---ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp SCHHHHHHHHHHSCCCCCC---GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cchHHHHHHHhcCCCCCCC---cccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111111111111 1122345677888999999999999999975
No 361
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.07 E-value=1e-10 Score=123.91 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.0
Q ss_pred ccccccCCCCc---ccccccccceeccCCCC-------CccccccccceeCCC
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSS-------NRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~-------~~~~~~gt~gy~aPE 736 (818)
|+|||++.+.. +||+|||+++....... .....+||..|+|||
T Consensus 139 p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 191 (316)
T 2ac3_A 139 PENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPE 191 (316)
T ss_dssp GGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHH
T ss_pred HHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChH
Confidence 89999998876 99999999987643211 123456999999999
No 362
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=129.09 Aligned_cols=109 Identities=23% Similarity=0.340 Sum_probs=59.3
Q ss_pred ccccccC-----CCCcccccccccceeccCCC---CCccccccccceeCCCC-------CCcchHHHHhcc---------
Q 003465 694 FNNILLN-----SEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPAK-------HPQEILSLFSST--------- 749 (818)
Q Consensus 694 ~~NILLd-----~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE~-------~~~~~l~~~~~~--------- 749 (818)
|+|||++ ....+||+|||+|+...... ...+..+||++|+|||. .++...+.|+..
T Consensus 146 p~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~ 225 (432)
T 3p23_A 146 PHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE 225 (432)
T ss_dssp TTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTT
T ss_pred HHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcC
Confidence 8999994 44568899999999875432 22356789999999991 111134444321
Q ss_pred -cCCCc-cccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 750 -SDPHI-TLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 750 -~~~~~-~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..+.. ....... .................+.+++..|++.+|++||++.||++
T Consensus 226 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 226 GSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp SCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 11111 0000000 00000000011122334567888999999999999999983
No 363
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.07 E-value=7.8e-11 Score=123.88 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=59.1
Q ss_pred ccccccCCCCcccccccccceeccCCCC-----CccccccccceeCCC-----CCCcchHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSS-----NRTLIAGTYRYIAPA-----KHPQEILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~-----~~~~~~gt~gy~aPE-----~~~~~~l~~~~~---------~~~~-- 752 (818)
|+||++++++.+||+|||+++....... ......||.+|+||| .......+.|+. ...+
T Consensus 149 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 228 (303)
T 2vwi_A 149 AGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYH 228 (303)
T ss_dssp GGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999987643321 123567999999999 111222233321 1111
Q ss_pred Ccccccee----cc---cCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLTYIL----DQ---RISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~~~~----d~---~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.....+.. .. .+.... ..........+.+++..|++.+|++||++.++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 229 KYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 10000000 00 000000 0000111234667888999999999999999986
No 364
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=2.9e-10 Score=122.07 Aligned_cols=101 Identities=27% Similarity=0.293 Sum_probs=50.1
Q ss_pred ecccCc-ccccCCCCCCCCCCCCcEEECcC-CCCCCCCccccCCCCCCCEEEccCCCCCCCCccCCCCCCCCcEEEcccC
Q 003465 130 LDLSHN-NLTGTIPSKLGNLNNLVELYLSR-SNLNGPIPSTLGHLTRLSILDLSSNSLVGPIPFTLGHLTQLTTLKLFSN 207 (818)
Q Consensus 130 L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 207 (818)
++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555 3454 55555555555553 5555444445555555555555555555544444555555555555555
Q ss_pred cCCccCCccccCCCCCCEEEccCCcC
Q 003465 208 QINGCIPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~l~~n~l 233 (818)
++++..+..|..++ |+.|+|.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55433333333332 44444444433
No 365
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.07 E-value=1.4e-10 Score=120.66 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccccccCCCC----cccccccccceeccCCCCCccccccccceeCCC----CCCcchHHHHhc---------ccCC--Cc
Q 003465 694 FNNILLNSEF----EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA----KHPQEILSLFSS---------TSDP--HI 754 (818)
Q Consensus 694 ~~NILLd~~~----~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE----~~~~~~l~~~~~---------~~~~--~~ 754 (818)
|+||+++.+. .+||+|||+++...... ......||.+|+||| .......+.|+. ...+ ..
T Consensus 136 p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 214 (283)
T 3bhy_A 136 PENIMLLDKNVPNPRIKLIDFGIAHKIEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE 214 (283)
T ss_dssp GGGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred hHHEEEecCCCCCCceEEEecccceeccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc
Confidence 8999999887 89999999998765432 233457999999999 222222333321 1111 11
Q ss_pred cccceecccCCC--cC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 TLTYILDQRISP--PK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 ~~~~~~d~~l~~--~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+........ .. ..........+.+++..|++.+|++||++.|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 215 TKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp SHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred chHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 111111100000 00 0001112345667888999999999999999986
No 366
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.07 E-value=1.2e-10 Score=124.51 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=33.1
Q ss_pred ccccccCC-------------------CCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNS-------------------EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~-------------------~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++. ++.+||+|||+++..... ....+||.+|+|||
T Consensus 146 p~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE 204 (339)
T 1z57_A 146 PENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPE 204 (339)
T ss_dssp GGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHH
T ss_pred HHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccc---cccccCCccccChH
Confidence 89999998 678999999999875432 23467999999999
No 367
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.06 E-value=4.8e-11 Score=130.67 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=70.3
Q ss_pred cccccc----CCCCcccccccccceeccCCCCCccccccccceeCCCC-----------CCcc-hHHHHhc---------
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK-----------HPQE-ILSLFSS--------- 748 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~-----------~~~~-~l~~~~~--------- 748 (818)
|+|||+ |.++.+||+|||+|+...... ......||.+|+|||. .+.+ ..+.|+.
T Consensus 140 p~NIll~~~~~~~~~~kL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~t 218 (396)
T 4eut_A 140 PGNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAAT 218 (396)
T ss_dssp GGGEEEEECTTSCEEEEECCGGGCEECCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHEEEeecCCCceeEEEecCCCceEccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence 899999 889999999999999875432 2234679999999991 1111 2233321
Q ss_pred ccCCC------ccccceec-------------------------ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCh
Q 003465 749 TSDPH------ITLTYILD-------------------------QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTM 797 (818)
Q Consensus 749 ~~~~~------~~~~~~~d-------------------------~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m 797 (818)
...+. ....+++. +.+.... .........+..+...|++.||++||++
T Consensus 219 g~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~ll~~~L~~dP~~R~s~ 297 (396)
T 4eut_A 219 GSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC-SLSRGLQVLLTPVLANILEADQEKCWGF 297 (396)
T ss_dssp SSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTC-SSCHHHHHHHHHHHHHHSCCCTTTSCCH
T ss_pred CCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCccc-ccchHHHhhchHHHHHhhccChhhhccH
Confidence 11110 00000000 0111110 1124455566788889999999999999
Q ss_pred HHHHHHHccC
Q 003465 798 QRVSQEFLKF 807 (818)
Q Consensus 798 ~~V~~~L~~~ 807 (818)
.|+++.++.+
T Consensus 298 ~e~l~~l~~i 307 (396)
T 4eut_A 298 DQFFAETSDI 307 (396)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999877
No 368
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.06 E-value=6.5e-11 Score=123.25 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-CcchHHHHhc---------ccCC--Ccccc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQEILSLFSS---------TSDP--HITLT- 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~~l~~~~~---------~~~~--~~~~~- 757 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .. .....+.|+. ...+ .....
T Consensus 142 p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 219 (284)
T 2vgo_A 142 PENLLMGYKGELKIADFGWSVHAPSL--RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE 219 (284)
T ss_dssp GGGEEECTTCCEEECCCTTCEECSSS--CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred HHHEEEcCCCCEEEecccccccCccc--ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH
Confidence 89999999999999999999865432 233467999999999 11 1122233321 1111 11111
Q ss_pred ---ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 ---YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ---~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+....... +......+.+++..|++.+|++||++.++++
T Consensus 220 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 220 THRRIVNVDLKF-----PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHTTCCCC-----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHhccccCC-----CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 111111111 1111234556778999999999999999985
No 369
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.06 E-value=2.8e-11 Score=128.92 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=66.2
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCC-cchHHHHhc----------ccCC--Ccccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHP-QEILSLFSS----------TSDP--HITLT 757 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~-~~~l~~~~~----------~~~~--~~~~~ 757 (818)
|+|||++.++.+||+|||+++...... ......+|.+|+||| ..+ ....+.|+. ...+ .....
T Consensus 170 p~NIl~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~ 248 (327)
T 1fvr_A 170 ARNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA 248 (327)
T ss_dssp GGGEEECGGGCEEECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred cceEEEcCCCeEEEcccCcCccccccc-cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH
Confidence 899999999999999999998543221 223456788999999 121 112223321 1111 11111
Q ss_pred ceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccC
Q 003465 758 YILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKF 807 (818)
Q Consensus 758 ~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~ 807 (818)
++.+....+.....+......+.+++..|++.+|++||++.++++.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~ 298 (327)
T 1fvr_A 249 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298 (327)
T ss_dssp HHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 11111110000011122334566788899999999999999999999987
No 370
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.05 E-value=1.3e-10 Score=125.09 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=33.3
Q ss_pred cccccc-------------------CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL-------------------NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL-------------------d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ +.++.+||+|||+++..... .....||.+|+|||
T Consensus 151 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE 209 (355)
T 2eu9_A 151 PENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPE 209 (355)
T ss_dssp GGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHH
T ss_pred HHHEEEecccccccccccccccccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCe
Confidence 899999 67899999999999875432 23467999999999
No 371
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.05 E-value=5.3e-11 Score=134.12 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=65.3
Q ss_pred cccccc---CCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------c--cCCCccc
Q 003465 694 FNNILL---NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------T--SDPHITL 756 (818)
Q Consensus 694 ~~NILL---d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~--~~~~~~~ 756 (818)
|+|||+ +.++.+||+|||+|+...... .....+||++|+||| .......+.|+. . .+.....
T Consensus 154 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 232 (484)
T 3nyv_A 154 PENLLLESKSKDANIRIIDFGLSTHFEASK-KMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANE 232 (484)
T ss_dssp GGGEEESSSSTTCCEEECCTTHHHHBCCCC-SHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCCcEEEEeeeeeEEccccc-ccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCH
Confidence 899999 567899999999998765433 334567999999999 222223334431 1 1111111
Q ss_pred cc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+ +......... +.+......+.++...|++.+|++||++.|+++
T Consensus 233 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 233 YDILKKVEKGKYTFEL-PQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHHHCCCCCCS-GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCC-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 11 1111111111 111222345667788999999999999999984
No 372
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.05 E-value=1e-10 Score=132.01 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=64.2
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++. ++.+||+|||+|+...... .....+||++|+||| +.+.+ ..+.|+.. .+.....
T Consensus 164 p~Nil~~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 242 (494)
T 3lij_A 164 PENLLLESKEKDALIKIVDFGLSAVFENQK-KMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD 242 (494)
T ss_dssp GGGEEESCSSTTCCEEECCCTTCEECBTTB-CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhhEEEeCCCCCCcEEEEECCCCeECCCCc-cccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 89999976 4559999999999875443 234567999999999 22222 33344321 1111111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++ ........ +........+.++...|++.+|++||++.|+++
T Consensus 243 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 243 QEILRKVEKGKYTFDS-PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp HHHHHHHHHTCCCCCS-GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhCCCCCCc-hhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 1111 11111111 111122334567778999999999999999874
No 373
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.05 E-value=7.5e-11 Score=123.74 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=65.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCC---------CCc-chHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK---------HPQ-EILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~---------~~~-~~l~~~~~---------~~~~-- 752 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||. .+. ...+.|+. ...+
T Consensus 152 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~ 230 (298)
T 1phk_A 152 PENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW 230 (298)
T ss_dssp GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cceEEEcCCCcEEEecccchhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence 899999999999999999998875433 2345679999999991 111 12333321 1111
Q ss_pred Cccccc----eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLTY----ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~~----~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.....+ +......... +........+.+++..|++.+|++||++.|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 231 HRKQMLMLRMIMSGNYQFGS-PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CSSHHHHHHHHHHTCCCCCT-TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CccHHHHHHHHhcCCcccCc-ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 111111 1111111111 111223345677888999999999999999875
No 374
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.05 E-value=1.3e-10 Score=130.97 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=63.5
Q ss_pred ccccccC---CCCcccccccccceeccCCCCCccccccccceeCCC--CCCcc-hHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILLN---SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHPQE-ILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd---~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~~~-~l~~~~~---------~~~~--~~~~ 756 (818)
|+|||++ .++.+||+|||+|+...... .....+||++|+||| +...+ ..+.|+. ...+ ....
T Consensus 149 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 227 (486)
T 3mwu_A 149 PENILLESKEKDCDIKIIDFGLSTCFQQNT-KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227 (486)
T ss_dssp GGGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hHHEEEecCCCCCCEEEEECCcCeECCCCC-ccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999995 56679999999998765432 234567999999999 22222 3334432 1111 1111
Q ss_pred ccee----cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 003465 757 TYIL----DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQE 803 (818)
Q Consensus 757 ~~~~----d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~ 803 (818)
.+++ ........ +.+......+.+++..|++.+|++||++.|+++.
T Consensus 228 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 228 YDILKRVETGKYAFDL-PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp HHHHHHHHHTCCCSCS-GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred HHHHHHHHhCCCCCCC-cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 1111 11111111 1112223445677889999999999999999863
No 375
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.05 E-value=1.9e-10 Score=120.14 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=63.6
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------ccCCC---cccc
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------TSDPH---ITLT 757 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~~---~~~~ 757 (818)
|+|||++ +++.+||+|||+++.... .......||.+|+||| .......+.|+. ...+. ....
T Consensus 159 p~Nil~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~ 236 (290)
T 1t4h_A 159 CDNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA 236 (290)
T ss_dssp GGGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH
T ss_pred HHHEEEECCCCCEEEeeCCCcccccc--cccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH
Confidence 7899998 889999999999975432 2334567999999999 222223333331 11111 1111
Q ss_pred ceecccCCCcC-ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 758 YILDQRISPPK-KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 758 ~~~d~~l~~~~-~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
++......... ...+......+.+++..|++.+|++||++.||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 237 QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 11111111100 0011112245677888999999999999999985
No 376
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.05 E-value=7.6e-11 Score=125.03 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccccccCCCCcccccccccceeccCC-----CCCccccccccceeCCC--CC----------Ccc-hHHHHhc-------
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSD-----SSNRTLIAGTYRYIAPA--KH----------PQE-ILSLFSS------- 748 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~-----~~~~~~~~gt~gy~aPE--~~----------~~~-~l~~~~~------- 748 (818)
|+|||+| ++.+||+|||+++..... ........||.+|+||| +. +.+ ..+.|+.
T Consensus 158 p~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el 236 (319)
T 2y4i_B 158 SKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYEL 236 (319)
T ss_dssp STTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHH
Confidence 8999999 679999999998865321 12234456999999999 11 111 2333431
Q ss_pred --ccCC--Cccccceec---ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHccCCC
Q 003465 749 --TSDP--HITLTYILD---QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQEFLKFPY 809 (818)
Q Consensus 749 --~~~~--~~~~~~~~d---~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~~ 809 (818)
...+ .....++.. ....... ........+.+++..|++.+|++||++.+|+++|+.+..
T Consensus 237 ~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~ 302 (319)
T 2y4i_B 237 HAREWPFKTQPAEAIIWQMGTGMKPNL--SQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPK 302 (319)
T ss_dssp HHSSCSSSSCCHHHHHHHHHTTCCCCC--CCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC--
T ss_pred HhCCCCCCCCCHHHHHHHhccCCCCCC--CcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 1111 111111110 0010000 000112345677889999999999999999999999943
No 377
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=123.76 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred ccccccC-CCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
|+|||+| +++.+||+|||+++...... .......||..|+|||
T Consensus 148 p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE 194 (320)
T 2i6l_A 148 PANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPR 194 (320)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHH
T ss_pred HHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcH
Confidence 8999997 67899999999999764321 1234556899999999
No 378
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.04 E-value=1.1e-10 Score=128.72 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccccccCCC-CcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSE-FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~-~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+|.+ ..+||+|||+|+.+..... ....+||.+|+|||
T Consensus 184 p~NILl~~~~~~~kl~DFG~a~~~~~~~~-~~~~~~t~~y~aPE 226 (420)
T 1j1b_A 184 PQNLLLDPDTAVLKLCDFGSAKQLVRGEP-NVSYICSRYYRAPE 226 (420)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSCCSCTTSCCHH
T ss_pred hhhEEEeCCCCeEEeccchhhhhcccCCC-ceeeeeCCCcCCHH
Confidence 899999965 6789999999998754332 33457899999999
No 379
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.04 E-value=3.7e-11 Score=136.01 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhcc---------cCCCccc----
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSST---------SDPHITL---- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~~---------~~~~~~~---- 756 (818)
|+|||+|.++++||+|||+|+...... ..+..+||++|+||| ..+.+ ..+.|+.. ..+....
T Consensus 314 PeNILld~~g~vKL~DFGla~~~~~~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~ 392 (576)
T 2acx_A 314 PENILLDDHGHIRISDLGLAVHVPEGQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI 392 (576)
T ss_dssp GGGEEECTTSCEEECCCTTCEECCTTC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC
T ss_pred hheEEEeCCCCeEEEecccceecccCc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch
Confidence 899999999999999999999875443 234468999999999 22222 34445321 1111100
Q ss_pred --cceecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCC-----ChHHHHH
Q 003465 757 --TYILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVP-----TMQRVSQ 802 (818)
Q Consensus 757 --~~~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP-----~m~~V~~ 802 (818)
.++......... ..+......+..++..|++.||++|| ++.||.+
T Consensus 393 ~~~~i~~~i~~~~~-~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 393 KREEVERLVKEVPE-EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred hHHHHHHHhhcccc-cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 001000000000 00111123456677799999999999 6777763
No 380
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.04 E-value=1.3e-10 Score=127.31 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 773 VQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 773 ~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+....+.+++..|++.||++||++.||++
T Consensus 362 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 362 QEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp HHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred hhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 345566778999999999999999999985
No 381
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.04 E-value=7e-11 Score=129.88 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=28.9
Q ss_pred cccccc----CCCCcccccccccceeccCCC---CCccccccccceeCCC
Q 003465 694 FNNILL----NSEFEAFFGNFGVARLLNSDS---SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL----d~~~~~ki~DFGla~~~~~~~---~~~~~~~gt~gy~aPE 736 (818)
|+|||+ ++++.+||+|||+|+...... ......+||++|+|||
T Consensus 156 p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE 205 (405)
T 3rgf_A 156 PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE 205 (405)
T ss_dssp GGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHH
T ss_pred HHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCch
Confidence 899999 788999999999999775432 2234578999999999
No 382
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=124.29 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||++++++.+||+|||+++..... .+...||.+|+|||
T Consensus 154 p~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE 193 (353)
T 3coi_A 154 PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPE 193 (353)
T ss_dssp GGGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHH
T ss_pred HHHEeECCCCcEEEeecccccCCCCC---ccccccCcCcCCHH
Confidence 89999999999999999999865432 33467899999999
No 383
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.03 E-value=9.6e-11 Score=127.12 Aligned_cols=103 Identities=6% Similarity=-0.032 Sum_probs=62.5
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC--C---CCcc-hHHHHhc---------ccCCCccc--
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--K---HPQE-ILSLFSS---------TSDPHITL-- 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~---~~~~-~l~~~~~---------~~~~~~~~-- 756 (818)
|+|||+|.++.+||+|||+|+..... .....||++|+||| . .+.+ ..+.|+. ...+....
T Consensus 222 p~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~ 298 (371)
T 3q60_A 222 PDNLFIMPDGRLMLGDVSALWKVGTR---GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP 298 (371)
T ss_dssp GGGEEECTTSCEEECCGGGEEETTCE---EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCT
T ss_pred HHHEEECCCCCEEEEecceeeecCCC---ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCc
Confidence 89999999999999999999976322 22456779999999 2 1222 3334431 11111100
Q ss_pred --ccee---------cccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 --TYIL---------DQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 --~~~~---------d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.... ........ .......+.+++..|++.+|++||++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 299 GIKGSWKRPSLRVPGTDSLAFGS---CTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TCTTCCCBCCTTSCCCCSCCCTT---SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred ccccchhhhhhhhccccccchhh---ccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000 01111110 1122345667788999999999999999863
No 384
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.03 E-value=1.3e-10 Score=128.66 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=61.2
Q ss_pred ccccccCC-------------CCcccccccccceeccCCCC----CccccccccceeCCC--C--------CC-cchHHH
Q 003465 694 FNNILLNS-------------EFEAFFGNFGVARLLNSDSS----NRTLIAGTYRYIAPA--K--------HP-QEILSL 745 (818)
Q Consensus 694 ~~NILLd~-------------~~~~ki~DFGla~~~~~~~~----~~~~~~gt~gy~aPE--~--------~~-~~~l~~ 745 (818)
|+|||++. ++.+||+|||+++....+.. .....+||++|+||| . .. +...+.
T Consensus 143 p~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di 222 (434)
T 2rio_A 143 PQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDI 222 (434)
T ss_dssp GGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHH
T ss_pred hHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhh
Confidence 89999965 45899999999998765422 124568999999999 1 11 123333
Q ss_pred Hhc----------ccCCCcc----ccceecccCCCc--CccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 746 FSS----------TSDPHIT----LTYILDQRISPP--KKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 746 ~~~----------~~~~~~~----~~~~~d~~l~~~--~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
|+. ...+... ...++....... ...........+.+++..|++.+|++||++.||++
T Consensus 223 wSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 223 FSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 431 1111110 011111111111 00112334456778889999999999999999985
No 385
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.02 E-value=2.5e-10 Score=129.15 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=64.9
Q ss_pred ccccccCCCC---cccccccccceeccCCCCCccccccccceeCCC--CCC-cchHHHHhcc-----------cCCCccc
Q 003465 694 FNNILLNSEF---EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA--KHP-QEILSLFSST-----------SDPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~---~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE--~~~-~~~l~~~~~~-----------~~~~~~~ 756 (818)
|+|||++.+. .+||+|||+|+...... .....+||++|+||| +.+ +...+.|+.. .+.....
T Consensus 174 p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 252 (504)
T 3q5i_A 174 PENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND 252 (504)
T ss_dssp GGGEEESSTTCCSSEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred HHHEEEecCCCCccEEEEECCCCEEcCCCC-ccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 8999998775 69999999999875443 234567999999999 222 2233444321 1111111
Q ss_pred cceecc----cCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYILDQ----RISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~~d~----~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.+++.. ...... +.+......+.++...|++.+|++||++.|+++
T Consensus 253 ~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 253 QDIIKKVEKGKYYFDF-NDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp HHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCc-cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 111111 111110 001112244667888999999999999999984
No 386
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.02 E-value=2.5e-10 Score=124.66 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=33.9
Q ss_pred ccccccCCCCcccccccccceeccCCC-------CCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDS-------SNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~-------~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++.+||+|||.+....... ......+||..|+|||
T Consensus 156 p~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE 205 (389)
T 3gni_B 156 ASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPE 205 (389)
T ss_dssp GGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHH
T ss_pred HHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHH
Confidence 899999999999999999987653221 1123457999999999
No 387
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.02 E-value=2.1e-10 Score=121.57 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=55.6
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCCCC------C---cchHHHHhc---------ccCCCc-
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH------P---QEILSLFSS---------TSDPHI- 754 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~------~---~~~l~~~~~---------~~~~~~- 754 (818)
|+||+++.++.+||+|||+++...... ......||.+|+|||.. . ....+.|+. ...+..
T Consensus 153 p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 231 (318)
T 2dyl_A 153 PSNILLDERGQIKLCDFGISGRLVDDK-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKN 231 (318)
T ss_dssp GGGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred HHHEEECCCCCEEEEECCCchhccCCc-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence 899999999999999999998764432 23345799999999911 1 112333321 111111
Q ss_pred --cccceecccCCCcC--ccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 755 --TLTYILDQRISPPK--KQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 755 --~~~~~~d~~l~~~~--~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+++...+.... .+........+.+++..|++.+|.+||++.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 232 CKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00111111100000 0000112234667778999999999999999875
No 388
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.02 E-value=1.4e-10 Score=123.97 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=63.4
Q ss_pred ccccccCCC----CcccccccccceeccCCCCCccccccccceeCCC---CCCcc-hHHHHhc---------ccCCC---
Q 003465 694 FNNILLNSE----FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQE-ILSLFSS---------TSDPH--- 753 (818)
Q Consensus 694 ~~NILLd~~----~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~-~l~~~~~---------~~~~~--- 753 (818)
|+|||+.++ ..+||+|||+++............+||.+|+||| ..+.+ ..+.|+. ...+.
T Consensus 144 p~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 223 (342)
T 2qr7_A 144 PSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANG 223 (342)
T ss_dssp GGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred HHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCC
Confidence 899998433 3599999999998765544455678999999999 11111 2333431 11111
Q ss_pred --ccccceec----ccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 754 --ITLTYILD----QRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 754 --~~~~~~~d----~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
....+++. ....... ..+......+.++...|++.||++||++.||++
T Consensus 224 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 224 PDDTPEEILARIGSGKFSLSG-GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp TTSCHHHHHHHHHHCCCCCCS-TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CcCCHHHHHHHHccCCcccCc-cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 01111111 1111110 001112234556777999999999999999875
No 389
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.01 E-value=1.2e-10 Score=125.05 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=64.4
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CC-Ccc--hHHHHhc---------cc--CCCccc
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KH-PQE--ILSLFSS---------TS--DPHITL 756 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~-~~~--~l~~~~~---------~~--~~~~~~ 756 (818)
|+||+++.++.+||+|||+++..... ......||.+|+||| .. +.+ ..+.|+. .. +.....
T Consensus 180 p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 257 (348)
T 2pml_X 180 PSNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS 257 (348)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred hHhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence 88999999999999999999876443 234567999999999 22 221 2333431 11 111100
Q ss_pred -ccee----cccCCCcCc--------------cchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 -TYIL----DQRISPPKK--------------QKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 -~~~~----d~~l~~~~~--------------~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++. ......... .........+.+++..|++.+|++||++.|+++
T Consensus 258 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 258 LVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp SHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111 111110000 000122345667888999999999999999986
No 390
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.01 E-value=1.3e-10 Score=123.35 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=62.8
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCCC------CCc-chHHHHhc---------ccCC--
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAK------HPQ-EILSLFSS---------TSDP-- 752 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~------~~~-~~l~~~~~---------~~~~-- 752 (818)
|+|||++.+.. +||+|||+++...... ......||.+|+|||. .+. ...+.|+. ...+
T Consensus 142 p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 220 (322)
T 2ycf_A 142 PENVLLSSQEEDCLIKITDFGHSKILGETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFS 220 (322)
T ss_dssp GGGEEESSSSSSCCEEECCCTTCEECCCCH-HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHEEEecCCCCCeEEEccCccceeccccc-ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 89999987665 9999999999764321 2234679999999992 111 12333431 1111
Q ss_pred Ccccc-ce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 753 HITLT-YI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 753 ~~~~~-~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
..... .+ ......... .........+.+++..|++.+|++||++.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 221 EHRTQVSLKDQITSGKYNFIP-EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp STTCSSCHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccchHHHHHHHHHhCccccCc-hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 11000 11 111111000 001122345677888999999999999999874
No 391
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.00 E-value=2.3e-10 Score=125.11 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=35.0
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+| .++.+||+|||+|+....... .....||.+|+|||
T Consensus 169 p~Nill~~~~~~~kL~DFG~a~~~~~~~~-~~~~~~t~~y~aPE 211 (394)
T 4e7w_A 169 PQNLLLDPPSGVLKLIDFGSAKILIAGEP-NVSYICSRYYRAPE 211 (394)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTCC-CCSSCSCGGGCCHH
T ss_pred HHHEEEcCCCCcEEEeeCCCcccccCCCC-CcccccCcCccCHH
Confidence 8999999 899999999999998754432 33457899999999
No 392
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.98 E-value=2.7e-10 Score=124.15 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=34.5
Q ss_pred ccccccC-CCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLN-SEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd-~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+| .++.+||+|||+|+.+..... .....||.+|+|||
T Consensus 169 p~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~t~~y~aPE 211 (383)
T 3eb0_A 169 PQNLLVNSKDNTLKLCDFGSAKKLIPSEP-SVAYICSRFYRAPE 211 (383)
T ss_dssp GGGEEEETTTTEEEECCCTTCEECCTTSC-CCCCCCCSSCCCHH
T ss_pred HHHEEEcCCCCcEEEEECCCCcccCCCCC-CcCcccCCCccCHH
Confidence 8999998 689999999999997754432 33457899999999
No 393
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.98 E-value=3.5e-10 Score=122.74 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.6
Q ss_pred cccccc------CCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILL------NSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILL------d~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||+ +..+.+||+|||+++..... .+...||.+|+|||
T Consensus 160 p~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE 205 (373)
T 1q8y_A 160 PENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPE 205 (373)
T ss_dssp GGGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHH
T ss_pred hHHeEEeccCCCcCcceEEEcccccccccCCC---CCCCCCCccccCcH
Confidence 899999 55668999999999876533 23457999999999
No 394
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=98.94 E-value=3.6e-10 Score=117.84 Aligned_cols=107 Identities=20% Similarity=0.133 Sum_probs=62.6
Q ss_pred ccccccCCC---CcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhc---------ccCC--Cccc
Q 003465 694 FNNILLNSE---FEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSS---------TSDP--HITL 756 (818)
Q Consensus 694 ~~NILLd~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~---------~~~~--~~~~ 756 (818)
|+||+++.+ +.+||+|||+++....... .....||..|+||| .......+.|+. ...+ ....
T Consensus 149 p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~ 227 (287)
T 2wei_A 149 PENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE 227 (287)
T ss_dssp GGGEEESCSSTTCCEEECSTTGGGTBCCCSS-CSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred hhhEEEecCCCcccEEEeccCcceeecCCCc-cccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCH
Confidence 899999764 4799999999987654322 23456999999999 222222233321 1111 1111
Q ss_pred cce----ecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 757 TYI----LDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 757 ~~~----~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
.++ ......... +........+.+++..|++.+|++||++.|+++
T Consensus 228 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 228 YDILKRVETGKYAFDL-PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHHCCCCCCS-GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCc-hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 111 111111111 111122345667888999999999999999986
No 395
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.94 E-value=4.1e-10 Score=120.25 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=47.8
Q ss_pred ccccccCC---CCcccccccccceeccCCCCCccccccccceeCCCCC---Ccc-hHHHHhc---------ccCCC--cc
Q 003465 694 FNNILLNS---EFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPAKH---PQE-ILSLFSS---------TSDPH--IT 755 (818)
Q Consensus 694 ~~NILLd~---~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE~~---~~~-~l~~~~~---------~~~~~--~~ 755 (818)
|+|||++. ++.+||+|||+++..... ......||.+|+|||.. +.+ ..+.|+. ...+. ..
T Consensus 156 p~NIll~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 233 (336)
T 3fhr_A 156 PENLLYTSKEKDAVLKLTDFGFAKETTQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNT 233 (336)
T ss_dssp GGGEEESCSSTTCCEEECCCTTCEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred HHHEEEEecCCCceEEEeccccceecccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence 89999986 455999999999876432 23346789999999922 111 2233321 11111 00
Q ss_pred ccc--------eecccCCCcCccchHHHHHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 756 LTY--------ILDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 756 ~~~--------~~d~~l~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
... +......... +........+.+++..|++.+|++||++.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 234 GQAISPGMKRRIRLGQYGFPN-PEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp -----------------CCCT-TTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred chhhhhhHHHhhhccccccCc-hhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 0000000000 111123345667888999999999999999996
No 396
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=1.5e-07 Score=102.18 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=46.1
Q ss_pred ccCCCCCCEEEcCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 003465 337 IGNLENLERVDMSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQ 416 (818)
Q Consensus 337 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 416 (818)
+..+..|+.+.+..+ +.......+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444333 22222334444444444444322 2222233444455555555554444433334455555555
Q ss_pred EEecccCcCcccCCccccCCCCCCEEECcC
Q 003465 417 SLILSNNSLTGRIPSEIRNLSYLHELDLSL 446 (818)
Q Consensus 417 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 446 (818)
.+.|..+ ++..-...|.++++|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5555432 3322233445555555555543
No 397
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.6e-09 Score=127.13 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC---CCCcchHHHHhcccC------CCccccceecccC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA---KHPQEILSLFSSTSD------PHITLTYILDQRI 764 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE---~~~~~~l~~~~~~~~------~~~~~~~~~d~~l 764 (818)
|+|||++++ .+||+|||+++..... +...||++|+||| ..++...+.|+.... ............+
T Consensus 210 p~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~ 284 (681)
T 2pzi_A 210 PENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGL 284 (681)
T ss_dssp GGGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSC
T ss_pred hHHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccccc
Confidence 899999987 8999999999976433 3467999999999 233333344432110 0000001111111
Q ss_pred CCcCccchHHHHHHHHHHHHhccCCCCCCCCC-hHHHHHHHcc
Q 003465 765 SPPKKQKIVQDIALASIVALACLQSKPKSVPT-MQRVSQEFLK 806 (818)
Q Consensus 765 ~~~~~~~~~~~~~~~~~la~~C~~~~p~~RP~-m~~V~~~L~~ 806 (818)
.... ........+.+++..|++.+|++||+ +.++...|..
T Consensus 285 ~~~~--~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 285 PEDD--PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp CTTC--HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred cccc--cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 1111 12223345677888999999999996 5555555544
No 398
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=1.9e-07 Score=101.35 Aligned_cols=164 Identities=12% Similarity=0.088 Sum_probs=100.6
Q ss_pred CCCCcEEEccccccCCcCCcccCCCCCCCEEEccCCcCCCCCchhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEE
Q 003465 268 LENLVYLSLNVNNLTGPIPSTLGRLTSLSDLDLSHNSLFGPIPPTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVD 347 (818)
Q Consensus 268 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 347 (818)
...+..+.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.++.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344444444332211 23344555666777766543 22233445666777777777654 3333445567777888887
Q ss_pred cCCCcccccCCcCcCCCCCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccCcCcc
Q 003465 348 MSSNKLEGPIPLTIGDLTNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNKLNGSIPSELMNCFSLQSLILSNNSLTG 427 (818)
Q Consensus 348 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 427 (818)
+..+ +.......|.++++|+.+.+.++.++......|.++.+|+.+.|..+ ++..-...|.+|.+|+.+.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 7654 44344556777888888888777777666677888888888888654 55444567888888888887654 443
Q ss_pred cCCccccCCC
Q 003465 428 RIPSEIRNLS 437 (818)
Q Consensus 428 ~~p~~l~~l~ 437 (818)
.-...|.+++
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 3344555554
No 399
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.83 E-value=1.5e-09 Score=124.31 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=33.9
Q ss_pred ccccccCCCCc---ccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFE---AFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~---~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+||+++.+.. +||+|||+++...... ......||.+|+|||
T Consensus 149 P~NILl~~~g~~~~vKL~DFG~a~~~~~~~-~~~~~~gt~~Y~APE 193 (676)
T 3qa8_A 149 PENIVLQPGPQRLIHKIIDLGYAKELDQGE-LCTEFVGTLQYLAPE 193 (676)
T ss_dssp STTEEEECCSSSCEEEECSCCCCCBTTSCC-CCCCCCSCCTTCSSC
T ss_pred HHHeEeecCCCceeEEEccccccccccccc-ccccccCCcccCChH
Confidence 89999996654 9999999999875443 234567999999999
No 400
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.3e-09 Score=114.62 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=44.9
Q ss_pred CCCCCEEECcCCcCCccCChhhhcCccccccccccEEECCCCcCcccCCcccccccCCcccCChhhcCCcCCCEEECCCC
Q 003465 436 LSYLHELDLSLNFISGMTPPQHFKQKHSIRDRLLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNN 515 (818)
Q Consensus 436 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~L~~l~ls~n~l~g~~p~~~~~~~~l~g~ip~~~~~l~~L~~L~Ls~N 515 (818)
+++|+.|+|++|.+.+..+..+.... ....|+.|+++.|.+.+..+. .++..+..+++|+.|+|++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n~L~d~G~~----------~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAGVLTDEGAR----------LLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSSCCBHHHHH----------HHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCCCCChHHHH----------HHHhhcccCCcceEEECCCC
Confidence 45556666655555443222222110 011455555555555443211 11223455677888888888
Q ss_pred cCccCCcccccC-CCCCCeeeCcCCC
Q 003465 516 SLDGTIPLEMGK-IIFLEYLDLSYNN 540 (818)
Q Consensus 516 ~l~~~~p~~l~~-l~~L~~L~ls~N~ 540 (818)
.++...-..+.. + ...++++.|+
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 776554444433 2 3557777665
No 401
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=2.8e-09 Score=113.91 Aligned_cols=139 Identities=21% Similarity=0.255 Sum_probs=70.6
Q ss_pred hhhcCCCCCCeeeccCCcCCCCcCccccCCCCCCEEEcCCCcccccCCcCc--CCCCCCCEEeccC--CcCCCC-----C
Q 003465 311 PTLSHLTRLTTLKLFSNQINGSIPLGIGNLENLERVDMSSNKLEGPIPLTI--GDLTNLIYLDLSL--NQLSGP-----I 381 (818)
Q Consensus 311 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~--n~l~~~-----~ 381 (818)
..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..|.+.......+ ..+|+|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455566666666655211 1222 22 5566666666665543222222 2456666666642 111111 0
Q ss_pred Cccc--CCCCCCCEEEccCCcCcccCCccc---cCCCCCCEEecccCcCccc----CCccccCCCCCCEEECcCCcCCcc
Q 003465 382 PSTF--GHLTLLKFLNLNSNKLNGSIPSEL---MNCFSLQSLILSNNSLTGR----IPSEIRNLSYLHELDLSLNFISGM 452 (818)
Q Consensus 382 ~~~~--~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 452 (818)
...+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 245677777777776654322222 2356677777777776653 222334556777777777766543
No 402
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=2.8e-10 Score=115.18 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=65.3
Q ss_pred ccCCCcCce--ecccCcccc---cCCCCCCCCCCCCcEEECcCCCCCC--CCccccCCCCCCCEEEccCCCCCCCCccCC
Q 003465 121 IGALSKLQI--LDLSHNNLT---GTIPSKLGNLNNLVELYLSRSNLNG--PIPSTLGHLTRLSILDLSSNSLVGPIPFTL 193 (818)
Q Consensus 121 ~~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 193 (818)
|...+.|+. ++++.|... ..++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 455555665 666666332 1112222457788888888888876 3345566788888888888888754 223
Q ss_pred CCCC--CCcEEEcccCcCCccCCc-------cccCCCCCCEEE
Q 003465 194 GHLT--QLTTLKLFSNQINGCIPL-------DFGNLRHLKEVD 227 (818)
Q Consensus 194 ~~l~--~L~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~ 227 (818)
..+. +|++|+|++|.+.+.+|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 778888888877754442 245666776664
No 403
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.55 E-value=7.1e-08 Score=102.83 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=33.2
Q ss_pred ccccccCCCC--------------------cccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEF--------------------EAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~--------------------~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||++.++ .+||+|||+|+..... ..+||..|+|||
T Consensus 190 p~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aPE 247 (336)
T 2vuw_A 190 WGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDED 247 (336)
T ss_dssp GGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCSG
T ss_pred HHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccChh
Confidence 8999999987 9999999999987532 347999999999
No 404
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.46 E-value=2.1e-08 Score=114.35 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=36.9
Q ss_pred ccccccCCCCcccccccccceeccCCCCCccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~~~~~~gt~gy~aPE 736 (818)
|+|||||+++++||+|||+||....+....+..+||++|||||
T Consensus 367 PeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE 409 (569)
T 4azs_A 367 PWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNE 409 (569)
T ss_dssp GGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHH
T ss_pred hHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHH
Confidence 9999999999999999999998866655566788999999999
No 405
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.41 E-value=1e-07 Score=99.69 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccCCCCCCCCChHHHHH
Q 003465 776 IALASIVALACLQSKPKSVPTMQRVSQ 802 (818)
Q Consensus 776 ~~~~~~la~~C~~~~p~~RP~m~~V~~ 802 (818)
...+.+++..|++.+|++||++.|+++
T Consensus 230 ~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 230 SEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 345667888999999999999999986
No 406
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=4.4e-08 Score=94.30 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=40.4
Q ss_pred CCCCCcEEECcCCCCCCC----CccccCCCCCCCEEEccCCCCCCC----CccCCCCCCCCcEEEc--ccCcCCcc----
Q 003465 147 NLNNLVELYLSRSNLNGP----IPSTLGHLTRLSILDLSSNSLVGP----IPFTLGHLTQLTTLKL--FSNQINGC---- 212 (818)
Q Consensus 147 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~---- 212 (818)
..++|++|+|++|.+.+. +...+...++|++|+|++|.+... +...+...++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344444455544444321 122233344555555555554432 2333444555555555 55555432
Q ss_pred CCccccCCCCCCEEEccCCcC
Q 003465 213 IPLDFGNLRHLKEVDLSGNKL 233 (818)
Q Consensus 213 ~~~~l~~l~~L~~L~l~~n~l 233 (818)
+...+...++|++|++++|.+
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeccCCCC
Confidence 222333445666666666654
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=2.1e-07 Score=89.51 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=25.1
Q ss_pred hhcCCcCCCEEEC--CCCcCccCC----cccccCCCCCCeeeCcCCCCc
Q 003465 500 EIGNCSGLLNVTL--SNNSLDGTI----PLEMGKIIFLEYLDLSYNNIP 542 (818)
Q Consensus 500 ~~~~l~~L~~L~L--s~N~l~~~~----p~~l~~l~~L~~L~ls~N~l~ 542 (818)
.+...++|+.|+| ++|.+.... ...+...+.|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444556666666 566666542 233444466777777777653
No 408
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=98.25 E-value=4.3e-07 Score=94.18 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCCCCCCChHHHHHHHccCC
Q 003465 777 ALASIVALACLQSKPKSVPTMQRVSQEFLKFP 808 (818)
Q Consensus 777 ~~~~~la~~C~~~~p~~RP~m~~V~~~L~~~~ 808 (818)
..+.+++..|++.||++| ++.|+++.|+++.
T Consensus 234 ~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~ 264 (286)
T 3uqc_A 234 FQISAVAARSVQGDGGIR-SASTLLNLMQQAT 264 (286)
T ss_dssp HHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCccC-CHHHHHHHHHHHh
Confidence 456778889999999999 9999999999873
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=1.7e-06 Score=87.50 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=78.2
Q ss_pred cCCCCCCcE--EEcCCCCCc---ccCCccccCCCcCceecccCccccc--CCCCCCCCCCCCcEEECcCCCCCCCCcccc
Q 003465 97 FSCFPNLES--FRIWYSNIS---GNIPSEIGALSKLQILDLSHNNLTG--TIPSKLGNLNNLVELYLSRSNLNGPIPSTL 169 (818)
Q Consensus 97 l~~l~~L~~--L~L~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 169 (818)
|...+.|.. ++++.|... ..++....++++|+.|+|++|.+++ .+|..+..+++|++|+|++|++++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 455556665 677777432 2222233578999999999999997 3456677899999999999999864 334
Q ss_pred CCCC--CCCEEEccCCCCCCCCcc-------CCCCCCCCcEEEc
Q 003465 170 GHLT--RLSILDLSSNSLVGPIPF-------TLGHLTQLTTLKL 204 (818)
Q Consensus 170 ~~l~--~L~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~L 204 (818)
..+. +|++|+|++|.+.+.+|. .+..+++|+.||-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 999999999999875552 3668899999873
No 410
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4e-06 Score=78.48 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=44.6
Q ss_pred CcCceecccCcccccCCCCCCCCCCCCcEEECcCCC-CCCCCccccCCC----CCCCEEEccCCC-CCCCCccCCCCCCC
Q 003465 125 SKLQILDLSHNNLTGTIPSKLGNLNNLVELYLSRSN-LNGPIPSTLGHL----TRLSILDLSSNS-LVGPIPFTLGHLTQ 198 (818)
Q Consensus 125 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 198 (818)
.+|+.|||++|.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777776665444445666666666666664 443322334433 246666666653 44332233444555
Q ss_pred CcEEEcccC
Q 003465 199 LTTLKLFSN 207 (818)
Q Consensus 199 L~~L~L~~n 207 (818)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 411
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=7.6e-06 Score=76.57 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=52.1
Q ss_pred CCCCEEeccCCcCCCCCCcccCCCCCCCEEEccCCc-CcccCCccccCC----CCCCEEecccCc-CcccCCccccCCCC
Q 003465 365 TNLIYLDLSLNQLSGPIPSTFGHLTLLKFLNLNSNK-LNGSIPSELMNC----FSLQSLILSNNS-LTGRIPSEIRNLSY 438 (818)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 438 (818)
..|+.||+++|.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665444455667777777777764 554333334443 367777777774 66544445666777
Q ss_pred CCEEECcCCc
Q 003465 439 LHELDLSLNF 448 (818)
Q Consensus 439 L~~L~Ls~N~ 448 (818)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 412
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=97.73 E-value=4.4e-06 Score=94.58 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=33.7
Q ss_pred ccccccCCCCcccccccccceeccCCCCC-------ccccccccceeCCC
Q 003465 694 FNNILLNSEFEAFFGNFGVARLLNSDSSN-------RTLIAGTYRYIAPA 736 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~~~~~~~-------~~~~~gt~gy~aPE 736 (818)
|+|||+++ ++||+|||+|+........ ....+||+.|||||
T Consensus 459 p~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APE 506 (540)
T 3en9_A 459 TSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDE 506 (540)
T ss_dssp TTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHH
Confidence 89999999 9999999999987543211 24678999999999
No 413
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=97.24 E-value=0.00015 Score=74.59 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=20.2
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||++ ++.+||+|||+|+..
T Consensus 221 p~NILl~-~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 221 QYNVLVS-EEGIWIIDFPQSVEV 242 (282)
T ss_dssp TTSEEEE-TTEEEECCCTTCEET
T ss_pred HHHEEEE-CCcEEEEECCCCeEC
Confidence 8999999 999999999999743
No 414
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.00013 Score=69.53 Aligned_cols=85 Identities=11% Similarity=0.136 Sum_probs=40.2
Q ss_pred cCCCcCceecccCc-ccccC----CCCCCCCCCCCcEEECcCCCCCCC----CccccCCCCCCCEEEccCCCCCCC----
Q 003465 122 GALSKLQILDLSHN-NLTGT----IPSKLGNLNNLVELYLSRSNLNGP----IPSTLGHLTRLSILDLSSNSLVGP---- 188 (818)
Q Consensus 122 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~---- 188 (818)
.+-+.|+.|+|++| .+... +-+.+..-+.|++|+|++|.+.+. +.+.+...+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555666553 44321 223334445555666665555421 223333445566666666655432
Q ss_pred CccCCCCCCCCcEEEccc
Q 003465 189 IPFTLGHLTQLTTLKLFS 206 (818)
Q Consensus 189 ~~~~l~~l~~L~~L~L~~ 206 (818)
+...+...+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222344444555555554
No 415
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00025 Score=67.64 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.4
Q ss_pred ccCCCCCCEEECcCCcC
Q 003465 433 IRNLSYLHELDLSLNFI 449 (818)
Q Consensus 433 l~~l~~L~~L~Ls~N~l 449 (818)
+..-+.|+.|+++.|.+
T Consensus 153 L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 153 IEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCCCCH
T ss_pred HHhCCCcCeEeccCCCc
Confidence 34445666666665543
No 416
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=96.12 E-value=0.0033 Score=63.52 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred ccccccCCCCcccccccccceec
Q 003465 694 FNNILLNSEFEAFFGNFGVARLL 716 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~~ 716 (818)
|+|||+++ .+||+|||+|+..
T Consensus 199 p~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 199 EYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp TTSEEESS--SEEECCCTTCEET
T ss_pred HHHEEEcC--cEEEEECcccccC
Confidence 89999998 9999999999865
No 417
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.71 E-value=0.017 Score=51.08 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=15.4
Q ss_pred CcEEECcCCCCCCCCccccCCCCCCCEEEccCCC
Q 003465 151 LVELYLSRSNLNGPIPSTLGHLTRLSILDLSSNS 184 (818)
Q Consensus 151 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 184 (818)
|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444443333334444444444444443
No 418
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.029 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=12.5
Q ss_pred CcEEEcccCcCCccCCccccCCCCCCEEEccCC
Q 003465 199 LTTLKLFSNQINGCIPLDFGNLRHLKEVDLSGN 231 (818)
Q Consensus 199 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 231 (818)
|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 333344433333333333333333444444333
No 419
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.89 E-value=0.17 Score=34.40 Aligned_cols=7 Identities=29% Similarity=0.690 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 003465 604 LFLLRRK 610 (818)
Q Consensus 604 ~~~~~~~ 610 (818)
+++.|||
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333333
No 420
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.27 E-value=0.25 Score=33.50 Aligned_cols=7 Identities=14% Similarity=-0.339 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 003465 586 ISIIFPI 592 (818)
Q Consensus 586 i~i~~~~ 592 (818)
|+.++++
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 3333343
No 421
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=87.50 E-value=0.2 Score=53.12 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=17.5
Q ss_pred CcEEEEEcCCCcEEEEEecc
Q 003465 658 LDVTAAFTKHGCLVAEYGSE 677 (818)
Q Consensus 658 g~vy~~~~~~g~~vAvK~~~ 677 (818)
|.||+|..++|+.||||..+
T Consensus 109 a~VY~a~d~~G~~vAvKi~r 128 (397)
T 4gyi_A 109 SDIMIVADEKGKQKVLKIHR 128 (397)
T ss_dssp EEEEEEECTTCCEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEEEe
Confidence 78999998889999999643
No 422
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=47.26 E-value=7.2 Score=24.91 Aligned_cols=7 Identities=14% Similarity=-0.254 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 003465 586 ISIIFPI 592 (818)
Q Consensus 586 i~i~~~~ 592 (818)
+++++++
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3333333
No 423
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.11 E-value=41 Score=23.83 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 003465 585 LISIIFPIAAFVAFLA 600 (818)
Q Consensus 585 ~i~i~~~~~~~~~~~~ 600 (818)
++++++.++++++.++
T Consensus 11 iIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444433333
No 424
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.90 E-value=1.6e+02 Score=23.81 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=6.5
Q ss_pred CCCCCCCCCcEEECc
Q 003465 143 SKLGNLNNLVELYLS 157 (818)
Q Consensus 143 ~~~~~l~~L~~L~Ls 157 (818)
..|.++.+|+.+.+-
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 344444444444443
No 425
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.35 E-value=85 Score=22.28 Aligned_cols=16 Identities=0% Similarity=-0.133 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 003465 585 LISIIFPIAAFVAFLA 600 (818)
Q Consensus 585 ~i~i~~~~~~~~~~~~ 600 (818)
++++++.++++++.++
T Consensus 14 iIi~svl~GLllL~li 29 (54)
T 2knc_A 14 WVLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444433333
No 426
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.33 E-value=94 Score=25.23 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=17.6
Q ss_pred CccccCCCcCceecccCcccccCCCCCCCCCCCCcEEECc
Q 003465 118 PSEIGALSKLQILDLSHNNLTGTIPSKLGNLNNLVELYLS 157 (818)
Q Consensus 118 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 157 (818)
..+|.++.+|+.+.|..+ ++..-...|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344555555555555433 222223344445555444443
No 427
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=20.36 E-value=27 Score=33.86 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.2
Q ss_pred ccccccCCCCccccccccccee
Q 003465 694 FNNILLNSEFEAFFGNFGVARL 715 (818)
Q Consensus 694 ~~NILLd~~~~~ki~DFGla~~ 715 (818)
+.||+++++..++|.|||.+..
T Consensus 193 ~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 193 LPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp GGGEEEETTEEEEECCCTTCEE
T ss_pred CCcEEEECCcEEEEEcchhccc
Confidence 8999999887788999998764
Done!