Query 003466
Match_columns 818
No_of_seqs 374 out of 3298
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 02:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0g_A Adenosylmethionine-8-am 100.0 3E-116 9E-121 1069.1 59.6 755 27-808 24-828 (831)
2 4e3q_A Pyruvate transaminase; 100.0 3.3E-75 1.1E-79 668.3 34.2 401 350-810 24-470 (473)
3 4atq_A 4-aminobutyrate transam 100.0 1.1E-68 3.7E-73 612.0 38.7 365 375-807 46-454 (456)
4 4ao9_A Beta-phenylalanine amin 100.0 1.2E-62 4.1E-67 560.5 37.7 381 331-811 25-449 (454)
5 3i5t_A Aminotransferase; pyrid 100.0 3E-59 1E-63 537.7 37.5 401 350-810 11-456 (476)
6 3hmu_A Aminotransferase, class 100.0 1.9E-59 6.5E-64 539.0 31.0 396 354-809 16-453 (472)
7 4a6r_A Omega transaminase; tra 100.0 9.1E-56 3.1E-60 505.5 39.2 400 352-810 9-451 (459)
8 3gju_A Putative aminotransfera 100.0 6.6E-56 2.3E-60 506.8 35.1 400 352-809 8-457 (460)
9 3tfu_A Adenosylmethionine-8-am 100.0 1.8E-54 6.3E-59 495.5 30.3 379 354-809 34-454 (457)
10 3dod_A Adenosylmethionine-8-am 100.0 3.6E-54 1.2E-58 490.5 30.6 395 353-810 5-445 (448)
11 3n5m_A Adenosylmethionine-8-am 100.0 3.2E-52 1.1E-56 474.4 34.3 389 352-807 11-451 (452)
12 3oks_A 4-aminobutyrate transam 100.0 1.1E-51 3.6E-56 471.3 37.9 369 375-807 43-450 (451)
13 4ffc_A 4-aminobutyrate aminotr 100.0 2E-51 6.7E-56 469.5 38.3 366 375-809 46-450 (453)
14 3i4j_A Aminotransferase, class 100.0 2.6E-47 9E-52 430.6 33.9 377 359-808 2-428 (430)
15 1z7d_A Ornithine aminotransfer 100.0 5.4E-46 1.9E-50 422.0 34.8 346 375-808 47-429 (433)
16 2yky_A Beta-transaminase; tran 100.0 3.5E-50 1.2E-54 460.3 0.0 378 332-810 39-462 (465)
17 3a8u_X Omega-amino acid--pyruv 100.0 2.3E-46 8E-51 425.5 28.6 394 353-808 11-447 (449)
18 2oat_A Ornithine aminotransfer 100.0 1.5E-45 5.1E-50 419.3 34.8 346 375-807 58-438 (439)
19 3l44_A Glutamate-1-semialdehyd 100.0 2.6E-45 8.8E-50 414.8 34.6 352 374-809 36-431 (434)
20 4e77_A Glutamate-1-semialdehyd 100.0 4E-45 1.4E-49 412.9 33.7 350 374-807 34-428 (429)
21 3k28_A Glutamate-1-semialdehyd 100.0 3.7E-45 1.3E-49 413.4 32.3 351 374-808 34-427 (429)
22 1ohv_A 4-aminobutyrate aminotr 100.0 1.5E-45 5E-50 423.4 28.4 374 377-808 47-471 (472)
23 3dxv_A Alpha-amino-epsilon-cap 100.0 2.3E-44 7.9E-49 407.6 35.6 363 375-810 25-427 (439)
24 3fq8_A Glutamate-1-semialdehyd 100.0 5.7E-44 1.9E-48 402.9 33.8 351 374-807 33-426 (427)
25 3nx3_A Acoat, acetylornithine 100.0 1.1E-43 3.8E-48 395.8 33.2 340 375-807 18-394 (395)
26 2pb2_A Acetylornithine/succiny 100.0 1.5E-43 5.2E-48 399.9 33.1 359 353-808 24-418 (420)
27 2cjg_A L-lysine-epsilon aminot 100.0 4.4E-43 1.5E-47 399.9 32.8 357 380-808 40-448 (449)
28 1zod_A DGD, 2,2-dialkylglycine 100.0 1.2E-42 4E-47 392.6 31.8 365 376-808 26-432 (433)
29 1s0a_A Adenosylmethionine-8-am 100.0 7.9E-42 2.7E-46 385.6 34.8 376 356-807 8-423 (429)
30 2epj_A Glutamate-1-semialdehyd 100.0 4.5E-42 1.5E-46 388.5 32.6 351 375-808 38-431 (434)
31 2e7u_A Glutamate-1-semialdehyd 100.0 7.9E-41 2.7E-45 377.2 31.6 347 375-805 34-424 (424)
32 2cy8_A D-phgat, D-phenylglycin 100.0 7.7E-40 2.6E-44 372.5 32.9 380 342-810 6-437 (453)
33 2eo5_A 419AA long hypothetical 100.0 1.4E-39 4.7E-44 367.0 33.4 363 375-808 24-418 (419)
34 3ruy_A Ornithine aminotransfer 100.0 5.4E-39 1.8E-43 357.3 34.9 340 375-805 18-391 (392)
35 4adb_A Succinylornithine trans 100.0 6.4E-38 2.2E-42 349.5 34.3 346 375-810 21-402 (406)
36 1sff_A 4-aminobutyrate aminotr 100.0 4.2E-37 1.4E-41 345.4 37.8 378 354-808 8-424 (426)
37 2ord_A Acoat, acetylornithine 100.0 4.7E-35 1.6E-39 326.4 29.9 340 374-807 21-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 5.7E-33 1.9E-37 309.0 30.8 333 375-805 27-394 (395)
39 3fgn_A Dethiobiotin synthetase 100.0 2.6E-33 8.8E-38 295.4 17.9 192 35-315 24-226 (251)
40 2eh6_A Acoat, acetylornithine 100.0 2.7E-31 9.2E-36 292.8 34.0 336 374-804 9-374 (375)
41 3qxc_A Dethiobiotin synthetase 100.0 4.9E-33 1.7E-37 291.7 18.4 201 33-313 17-231 (242)
42 3of5_A Dethiobiotin synthetase 100.0 2.7E-33 9.3E-38 291.7 16.1 206 36-326 3-216 (228)
43 2w8t_A SPT, serine palmitoyltr 100.0 2.8E-27 9.4E-32 267.2 27.8 313 378-809 49-416 (427)
44 3kki_A CAI-1 autoinducer synth 99.9 9.1E-27 3.1E-31 260.6 20.9 301 387-807 51-403 (409)
45 3l8a_A METC, putative aminotra 99.9 6.3E-27 2.2E-31 263.4 18.6 320 383-806 47-420 (421)
46 3tqx_A 2-amino-3-ketobutyrate 99.9 1.1E-25 3.6E-30 249.6 22.6 314 378-808 29-396 (399)
47 1fc4_A 2-amino-3-ketobutyrate 99.9 5E-25 1.7E-29 245.2 21.4 315 378-808 30-397 (401)
48 3a2b_A Serine palmitoyltransfe 99.9 1E-23 3.4E-28 234.6 24.7 335 344-809 6-393 (398)
49 1bs0_A Protein (8-amino-7-oxon 99.9 6.3E-23 2.1E-27 226.9 23.5 306 377-804 24-383 (384)
50 3dzz_A Putative pyridoxal 5'-p 99.9 2E-22 6.8E-27 222.6 22.5 322 380-808 14-389 (391)
51 3fdb_A Beta C-S lyase, putativ 99.9 6.9E-22 2.4E-26 217.4 17.2 313 381-807 11-375 (377)
52 3kax_A Aminotransferase, class 99.9 3.9E-21 1.4E-25 211.6 22.5 320 378-805 8-382 (383)
53 2bwn_A 5-aminolevulinate synth 99.9 4.8E-21 1.6E-25 213.2 21.1 300 393-808 44-400 (401)
54 4dq6_A Putative pyridoxal phos 99.9 2.2E-21 7.5E-26 214.3 18.1 321 383-805 15-390 (391)
55 3nra_A Aspartate aminotransfer 99.9 4.3E-21 1.5E-25 213.3 20.2 332 378-808 21-405 (407)
56 1c7n_A Cystalysin; transferase 99.9 1.7E-20 6E-25 208.3 21.3 325 384-809 13-394 (399)
57 1byi_A Dethiobiotin synthase; 99.8 1.7E-20 5.9E-25 192.8 17.9 205 38-326 2-220 (224)
58 2zc0_A Alanine glyoxylate tran 99.8 5.3E-20 1.8E-24 205.0 22.6 314 400-808 35-404 (407)
59 1yiz_A Kynurenine aminotransfe 99.8 1.4E-19 4.7E-24 203.4 24.7 319 400-805 38-426 (429)
60 1d2f_A MALY protein; aminotran 99.8 2.3E-19 7.9E-24 198.8 25.6 323 383-808 11-389 (390)
61 3ftb_A Histidinol-phosphate am 99.8 2.8E-19 9.4E-24 195.5 25.8 294 392-806 23-359 (361)
62 2zyj_A Alpha-aminodipate amino 99.8 7.1E-20 2.4E-24 203.7 20.9 308 400-809 33-394 (397)
63 3piu_A 1-aminocyclopropane-1-c 99.8 1.3E-19 4.3E-24 204.5 22.2 328 389-809 30-433 (435)
64 2dou_A Probable N-succinyldiam 99.8 1.1E-19 3.9E-24 200.3 20.6 300 393-805 23-375 (376)
65 3euc_A Histidinol-phosphate am 99.8 4.5E-19 1.5E-23 194.7 24.9 296 400-805 31-365 (367)
66 1lc5_A COBD, L-threonine-O-3-p 99.8 1.3E-19 4.5E-24 199.2 19.6 300 391-809 20-361 (364)
67 3b1d_A Betac-S lyase; HET: PLP 99.7 7.9E-22 2.7E-26 219.3 0.0 322 383-806 17-391 (392)
68 3ly1_A Putative histidinol-pho 99.8 7.7E-19 2.6E-23 191.6 23.3 303 388-807 9-351 (354)
69 1vp4_A Aminotransferase, putat 99.8 3.1E-19 1.1E-23 200.8 20.5 316 400-809 44-419 (425)
70 3aow_A Putative uncharacterize 99.8 1.3E-18 4.4E-23 198.0 25.0 314 400-808 77-445 (448)
71 3jtx_A Aminotransferase; NP_28 99.8 1.2E-18 4.1E-23 193.1 24.2 312 389-805 24-395 (396)
72 1j32_A Aspartate aminotransfer 99.8 1.4E-18 4.9E-23 192.1 24.7 310 393-808 28-387 (388)
73 3ffh_A Histidinol-phosphate am 99.8 1.2E-18 4.1E-23 191.0 23.2 290 400-804 33-362 (363)
74 2x5d_A Probable aminotransfera 99.8 6.5E-19 2.2E-23 197.1 21.0 315 392-810 34-400 (412)
75 3ezs_A Aminotransferase ASPB; 99.8 5.1E-19 1.8E-23 194.7 19.4 301 400-807 24-374 (376)
76 2gb3_A Aspartate aminotransfer 99.8 1.9E-18 6.5E-23 193.2 23.4 313 393-818 41-409 (409)
77 1kmj_A Selenocysteine lyase; p 99.8 1.6E-17 5.5E-22 183.7 30.4 291 414-808 33-405 (406)
78 1v2d_A Glutamine aminotransfer 99.8 2.1E-18 7.1E-23 190.5 22.3 297 400-811 26-374 (381)
79 3cq5_A Histidinol-phosphate am 99.8 5E-18 1.7E-22 187.0 25.1 292 402-805 33-365 (369)
80 1xi9_A Putative transaminase; 99.8 3.9E-18 1.3E-22 190.4 24.4 313 393-808 36-403 (406)
81 2o1b_A Aminotransferase, class 99.8 1.1E-18 3.7E-23 195.3 19.7 303 400-807 48-402 (404)
82 3h14_A Aminotransferase, class 99.8 2.3E-18 7.9E-23 190.9 21.6 312 392-811 28-385 (391)
83 3dyd_A Tyrosine aminotransfera 99.8 1.3E-17 4.3E-22 188.1 27.9 319 390-808 49-424 (427)
84 3ele_A Amino transferase; RER0 99.8 1.3E-17 4.3E-22 185.2 27.4 304 400-808 36-396 (398)
85 3b46_A Aminotransferase BNA3; 99.8 3.2E-18 1.1E-22 194.3 22.9 317 400-803 58-442 (447)
86 1gd9_A Aspartate aminotransfer 99.8 4.1E-18 1.4E-22 188.5 23.1 307 400-809 27-387 (389)
87 3op7_A Aminotransferase class 99.8 1.5E-18 5E-23 191.2 18.8 266 445-809 65-372 (375)
88 1u08_A Hypothetical aminotrans 99.8 1.1E-17 3.6E-22 185.2 25.3 301 400-803 31-385 (386)
89 2z61_A Probable aspartate amin 99.8 7.8E-18 2.7E-22 185.2 23.1 290 400-806 30-369 (370)
90 2o0r_A RV0858C (N-succinyldiam 99.8 4.5E-18 1.5E-22 190.2 21.0 311 400-809 26-397 (411)
91 1iay_A ACC synthase 2, 1-amino 99.8 2.3E-17 7.8E-22 185.4 26.2 316 400-807 37-426 (428)
92 3ke3_A Putative serine-pyruvat 99.8 3.4E-18 1.2E-22 189.7 17.9 299 388-809 5-377 (379)
93 1o4s_A Aspartate aminotransfer 99.8 3.7E-17 1.3E-21 181.5 26.2 301 400-806 42-387 (389)
94 3f9t_A TDC, L-tyrosine decarbo 99.8 9.9E-18 3.4E-22 184.3 21.1 293 418-806 43-396 (397)
95 1t3i_A Probable cysteine desul 99.8 1.4E-16 4.8E-21 177.2 30.2 302 400-809 28-414 (420)
96 1elu_A L-cysteine/L-cystine C- 99.8 1.6E-17 5.4E-22 183.0 20.8 286 412-803 24-387 (390)
97 3hdo_A Histidinol-phosphate am 99.8 1.9E-17 6.4E-22 181.7 21.1 294 392-805 23-352 (360)
98 1svv_A Threonine aldolase; str 99.8 9.2E-18 3.2E-22 182.5 18.3 301 400-808 14-358 (359)
99 3g0t_A Putative aminotransfera 99.8 5.2E-17 1.8E-21 182.5 25.0 313 389-807 38-436 (437)
100 3fvs_A Kynurenine--oxoglutarat 99.8 6E-17 2.1E-21 181.1 24.5 324 400-807 29-421 (422)
101 3qgu_A LL-diaminopimelate amin 99.8 1.2E-17 4.1E-22 188.9 19.1 311 393-808 67-440 (449)
102 1ax4_A Tryptophanase; tryptoph 99.8 2E-17 6.8E-22 187.9 20.7 321 400-809 44-442 (467)
103 3lvm_A Cysteine desulfurase; s 99.8 2.6E-17 8.8E-22 184.0 21.0 298 400-810 24-401 (423)
104 2oqx_A Tryptophanase; lyase, p 99.7 1.7E-17 5.8E-22 188.5 17.3 321 400-809 42-443 (467)
105 3zrp_A Serine-pyruvate aminotr 99.7 4.7E-17 1.6E-21 178.6 19.9 281 418-809 14-364 (384)
106 2dr1_A PH1308 protein, 386AA l 99.7 9.8E-17 3.3E-21 176.4 22.0 295 400-809 21-380 (386)
107 1v72_A Aldolase; PLP-dependent 99.7 8.7E-17 3E-21 174.8 21.3 296 400-808 8-353 (356)
108 1qz9_A Kynureninase; kynurenin 99.7 2.9E-16 1E-20 175.0 25.3 297 400-808 30-402 (416)
109 3get_A Histidinol-phosphate am 99.7 1.3E-16 4.4E-21 174.9 21.7 292 400-805 31-364 (365)
110 3e2y_A Kynurenine-oxoglutarate 99.7 3.1E-16 1.1E-20 174.4 24.8 319 400-803 24-408 (410)
111 2q7w_A Aspartate aminotransfer 99.7 2.6E-17 9E-22 182.3 15.4 305 392-804 23-395 (396)
112 1ajs_A Aspartate aminotransfer 99.7 5.2E-17 1.8E-21 181.2 17.3 311 400-808 31-411 (412)
113 3kgw_A Alanine-glyoxylate amin 99.7 2.7E-17 9.2E-22 181.1 14.7 284 418-809 35-389 (393)
114 2ay1_A Aroat, aromatic amino a 99.7 2E-17 7E-22 183.2 13.6 301 400-804 27-392 (394)
115 1bw0_A TAT, protein (tyrosine 99.7 7.5E-16 2.6E-20 172.0 25.2 313 400-808 34-413 (416)
116 3fkd_A L-threonine-O-3-phospha 99.7 5.3E-16 1.8E-20 169.2 22.6 297 381-807 3-341 (350)
117 3t18_A Aminotransferase class 99.7 6.7E-16 2.3E-20 172.5 23.8 308 400-809 38-411 (413)
118 3mad_A Sphingosine-1-phosphate 99.7 8.2E-16 2.8E-20 177.6 24.6 299 415-810 107-471 (514)
119 1eg5_A Aminotransferase; PLP-d 99.7 1.3E-15 4.4E-20 167.1 24.9 299 400-810 3-378 (384)
120 1vjo_A Alanine--glyoxylate ami 99.7 1.9E-16 6.4E-21 175.2 18.4 290 400-805 35-392 (393)
121 3f0h_A Aminotransferase; RER07 99.7 1.5E-16 5.2E-21 174.7 17.5 281 418-806 31-372 (376)
122 3rq1_A Aminotransferase class 99.7 8E-16 2.7E-20 172.1 23.7 312 400-809 39-416 (418)
123 2x5f_A Aspartate_tyrosine_phen 99.7 1.6E-16 5.5E-21 178.6 17.7 308 400-808 48-429 (430)
124 2dkj_A Serine hydroxymethyltra 99.7 1.4E-16 4.9E-21 176.8 16.7 294 400-807 24-387 (407)
125 1cs1_A CGS, protein (cystathio 99.7 1.4E-15 4.8E-20 168.8 24.6 253 440-804 49-383 (386)
126 2ez2_A Beta-tyrosinase, tyrosi 99.7 1E-15 3.4E-20 173.4 21.5 314 400-809 43-432 (456)
127 2rfv_A Methionine gamma-lyase; 99.7 1.7E-15 5.9E-20 168.9 21.5 275 418-804 39-396 (398)
128 1m32_A 2-aminoethylphosphonate 99.7 4.9E-16 1.7E-20 169.1 16.4 297 400-807 4-364 (366)
129 3nnk_A Ureidoglycine-glyoxylat 99.7 3.7E-16 1.3E-20 173.4 15.6 284 418-809 25-391 (411)
130 1fg7_A Histidinol phosphate am 99.7 1.7E-15 5.7E-20 166.5 20.3 283 400-803 30-353 (356)
131 2cb1_A O-acetyl homoserine sul 99.7 4.4E-15 1.5E-19 166.7 24.0 275 411-803 28-411 (412)
132 2obn_A Hypothetical protein; s 99.7 1.7E-16 5.8E-21 173.2 12.0 88 220-311 225-336 (349)
133 3ei9_A LL-diaminopimelate amin 99.7 7.9E-15 2.7E-19 164.9 24.8 307 400-805 57-425 (432)
134 3ez1_A Aminotransferase MOCR f 99.7 4.1E-16 1.4E-20 174.7 14.1 319 400-809 17-416 (423)
135 2e7j_A SEP-tRNA:Cys-tRNA synth 99.7 8.4E-16 2.9E-20 168.2 15.8 297 400-808 10-370 (371)
136 3asa_A LL-diaminopimelate amin 99.6 6.3E-15 2.2E-19 164.1 22.8 300 400-808 34-393 (400)
137 3qhx_A Cystathionine gamma-syn 99.6 3.8E-15 1.3E-19 166.4 20.8 253 440-801 63-391 (392)
138 2z9v_A Aspartate aminotransfer 99.6 3.2E-15 1.1E-19 165.0 20.0 294 400-809 10-372 (392)
139 3gbx_A Serine hydroxymethyltra 99.6 4.9E-16 1.7E-20 173.0 13.0 179 602-808 159-396 (420)
140 3mc6_A Sphingosine-1-phosphate 99.6 3.6E-15 1.2E-19 171.2 20.5 296 415-809 75-438 (497)
141 3e9k_A Kynureninase; kynurenin 99.6 1.4E-15 4.7E-20 173.2 16.7 306 400-808 69-461 (465)
142 3lws_A Aromatic amino acid bet 99.6 1.3E-15 4.3E-20 166.5 15.5 300 399-805 3-356 (357)
143 1gc0_A Methionine gamma-lyase; 99.6 1.4E-14 4.8E-19 161.7 23.8 255 440-804 62-397 (398)
144 2yrr_A Aminotransferase, class 99.6 1.2E-15 4.3E-20 165.0 14.6 279 418-807 12-352 (353)
145 2oga_A Transaminase; PLP-depen 99.6 3.3E-15 1.1E-19 166.5 18.1 286 400-808 31-396 (399)
146 2r2n_A Kynurenine/alpha-aminoa 99.6 2.1E-14 7.2E-19 161.5 24.3 277 440-807 79-423 (425)
147 4hvk_A Probable cysteine desul 99.6 2.9E-14 1E-18 155.7 24.8 299 400-810 2-375 (382)
148 3g7q_A Valine-pyruvate aminotr 99.6 4.1E-15 1.4E-19 165.8 18.2 179 618-809 179-414 (417)
149 4f4e_A Aromatic-amino-acid ami 99.6 3.9E-15 1.3E-19 167.1 18.1 302 400-805 50-419 (420)
150 3nmy_A Xometc, cystathionine g 99.6 2.6E-15 8.9E-20 168.6 16.6 219 439-768 63-335 (400)
151 2huf_A Alanine glyoxylate amin 99.6 3.2E-15 1.1E-19 165.1 17.1 283 418-809 31-384 (393)
152 1jg8_A L-ALLO-threonine aldola 99.6 1.6E-14 5.5E-19 156.9 22.3 299 400-807 4-345 (347)
153 3ndn_A O-succinylhomoserine su 99.6 2.2E-15 7.6E-20 169.9 15.8 235 439-776 77-360 (414)
154 3fsl_A Aromatic-amino-acid ami 99.6 4.1E-15 1.4E-19 164.7 17.4 301 400-804 27-396 (397)
155 3ecd_A Serine hydroxymethyltra 99.6 4.7E-15 1.6E-19 165.3 17.8 287 415-808 43-397 (425)
156 4eb5_A Probable cysteine desul 99.6 6.3E-14 2.1E-18 153.7 25.6 299 400-810 2-375 (382)
157 2ctz_A O-acetyl-L-homoserine s 99.6 3E-15 1E-19 168.8 15.2 161 440-704 55-221 (421)
158 3uwc_A Nucleotide-sugar aminot 99.6 4.3E-15 1.5E-19 163.1 15.9 270 421-807 21-370 (374)
159 2qma_A Diaminobutyrate-pyruvat 99.6 1E-13 3.6E-18 159.4 28.1 179 620-808 259-496 (497)
160 3ppl_A Aspartate aminotransfer 99.6 5.9E-15 2E-19 165.8 16.4 189 602-809 170-421 (427)
161 3if2_A Aminotransferase; YP_26 99.6 1.1E-14 3.7E-19 164.2 18.3 179 618-809 205-441 (444)
162 3cai_A Possible aminotransfera 99.6 1.1E-13 3.7E-18 153.7 25.1 291 400-803 28-404 (406)
163 3acz_A Methionine gamma-lyase; 99.6 4.6E-14 1.6E-18 157.3 22.1 192 412-711 31-229 (389)
164 2vi8_A Serine hydroxymethyltra 99.6 9.7E-15 3.3E-19 161.9 16.0 295 400-809 25-388 (405)
165 3isl_A Purine catabolism prote 99.6 7.1E-15 2.4E-19 163.4 14.3 291 412-808 14-390 (416)
166 1wyu_B Glycine dehydrogenase s 99.6 2.9E-14 9.9E-19 163.2 19.5 296 413-807 75-440 (474)
167 3vax_A Putative uncharacterize 99.6 4.8E-15 1.6E-19 164.1 12.5 301 389-807 15-399 (400)
168 1iug_A Putative aspartate amin 99.6 5.2E-14 1.8E-18 152.6 19.2 277 418-808 13-348 (352)
169 3frk_A QDTB; aminotransferase, 99.6 1.1E-14 3.9E-19 160.2 14.1 277 412-806 7-366 (373)
170 2ch1_A 3-hydroxykynurenine tra 99.6 1.5E-14 5.1E-19 159.9 15.0 283 418-809 30-384 (396)
171 1mdo_A ARNB aminotransferase; 99.6 1.6E-13 5.6E-18 151.5 21.8 275 418-808 19-386 (393)
172 3dr4_A Putative perosamine syn 99.5 2.4E-14 8.3E-19 158.6 14.8 274 419-805 36-390 (391)
173 3h7f_A Serine hydroxymethyltra 99.5 2.7E-14 9.4E-19 162.1 15.2 288 415-808 56-414 (447)
174 3d6k_A Putative aminotransfera 99.5 4.5E-14 1.5E-18 158.6 16.8 189 602-809 168-419 (422)
175 1yaa_A Aspartate aminotransfer 99.5 3E-14 1E-18 159.0 15.1 308 400-807 30-410 (412)
176 3n0l_A Serine hydroxymethyltra 99.5 1E-13 3.6E-18 154.2 18.0 285 415-808 36-389 (417)
177 1uu1_A Histidinol-phosphate am 99.5 1.2E-13 4E-18 150.0 17.7 279 400-804 20-334 (335)
178 3a9z_A Selenocysteine lyase; P 99.5 4.5E-13 1.5E-17 150.2 22.4 222 400-707 20-262 (432)
179 1pff_A Methionine gamma-lyase; 99.5 2E-13 6.8E-18 147.6 18.7 244 447-804 2-330 (331)
180 2fnu_A Aminotransferase; prote 99.5 3.5E-13 1.2E-17 147.6 20.4 277 418-808 12-372 (375)
181 2po3_A 4-dehydrase; external a 99.5 1.2E-12 4.2E-17 146.8 24.7 283 418-815 31-393 (424)
182 3p1t_A Putative histidinol-pho 99.5 1.5E-12 5E-17 140.6 24.2 282 400-805 17-334 (337)
183 3f6t_A Aspartate aminotransfer 99.5 9.1E-14 3.1E-18 161.7 15.4 225 400-706 100-330 (533)
184 3pj0_A LMO0305 protein; struct 99.5 1.2E-13 4E-18 150.8 14.8 281 418-804 28-358 (359)
185 1b5p_A Protein (aspartate amin 99.5 2.4E-12 8.2E-17 142.5 23.5 302 400-806 32-383 (385)
186 1qgn_A Protein (cystathionine 99.5 7.2E-13 2.5E-17 150.8 19.7 256 440-807 111-444 (445)
187 2bkw_A Alanine-glyoxylate amin 99.5 3.4E-13 1.2E-17 148.0 14.7 176 602-807 127-383 (385)
188 1b9h_A AHBA synthase, protein 99.5 3.9E-12 1.3E-16 140.5 22.9 277 418-807 16-387 (388)
189 3nyt_A Aminotransferase WBPE; 99.4 3E-13 1E-17 148.8 12.7 274 413-803 7-359 (367)
190 1o69_A Aminotransferase; struc 99.4 3.1E-12 1E-16 142.3 20.3 191 418-711 11-205 (394)
191 3ffr_A Phosphoserine aminotran 99.4 3.2E-12 1.1E-16 138.8 18.3 274 418-805 16-361 (362)
192 1e5e_A MGL, methionine gamma-l 99.4 1.3E-11 4.4E-16 138.3 23.6 249 441-808 60-395 (404)
193 2c81_A Glutamine-2-deoxy-scyll 99.4 1.3E-11 4.3E-16 138.2 23.3 283 418-808 15-414 (418)
194 1n8p_A Cystathionine gamma-lya 99.4 4.3E-12 1.5E-16 141.8 19.3 254 440-804 52-391 (393)
195 1ibj_A CBL, cystathionine beta 99.4 2.6E-12 9E-17 146.9 17.3 251 441-807 131-461 (464)
196 2jis_A Cysteine sulfinic acid 99.4 2.2E-11 7.5E-16 140.8 24.0 290 443-807 148-514 (515)
197 4eu1_A Mitochondrial aspartate 99.4 2.8E-12 9.4E-17 143.0 15.2 217 400-706 42-278 (409)
198 3cog_A Cystathionine gamma-lya 99.4 3.3E-11 1.1E-15 135.1 22.2 253 440-805 64-399 (403)
199 3ht4_A Aluminum resistance pro 99.3 1.7E-11 5.7E-16 139.0 19.3 263 418-771 37-345 (431)
200 3b8x_A WBDK, pyridoxamine 5-ph 99.3 9.2E-11 3.1E-15 129.8 24.6 190 418-708 14-208 (390)
201 3tcm_A Alanine aminotransferas 99.3 9.5E-12 3.2E-16 143.4 17.1 312 418-812 108-498 (500)
202 3meb_A Aspartate aminotransfer 99.3 7.7E-12 2.6E-16 141.9 15.1 94 602-703 190-293 (448)
203 2aeu_A Hypothetical protein MJ 99.3 5.7E-12 2E-16 139.7 13.0 275 418-809 43-372 (374)
204 2okj_A Glutamate decarboxylase 99.3 9.8E-11 3.3E-15 134.8 22.4 198 602-807 230-501 (504)
205 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.3 9E-11 3.1E-15 132.4 21.2 188 418-707 42-236 (437)
206 3ri6_A O-acetylhomoserine sulf 99.3 1.4E-11 4.9E-16 139.5 14.5 161 440-703 79-242 (430)
207 3ihj_A Alanine aminotransferas 99.2 3.6E-10 1.2E-14 130.2 20.8 310 418-810 103-495 (498)
208 2dgk_A GAD-beta, GADB, glutama 99.2 1.4E-09 4.8E-14 123.2 24.9 302 418-810 55-436 (452)
209 7aat_A Aspartate aminotransfer 99.2 3.4E-10 1.2E-14 125.5 19.4 222 400-703 29-264 (401)
210 2x3l_A ORN/Lys/Arg decarboxyla 99.2 2.7E-11 9.3E-16 137.6 10.6 170 619-808 146-353 (446)
211 2g0t_A Conserved hypothetical 99.2 4.2E-11 1.4E-15 131.1 10.3 151 37-309 169-333 (350)
212 2fq6_A Cystathionine beta-lyas 99.2 2.2E-10 7.6E-15 129.1 16.3 258 439-803 78-413 (415)
213 3hbx_A GAD 1, glutamate decarb 99.2 2.3E-09 8E-14 123.6 24.5 303 415-809 67-445 (502)
214 2zy4_A L-aspartate beta-decarb 99.1 3.6E-10 1.2E-14 131.8 17.0 223 400-710 105-337 (546)
215 4e1o_A HDC, histidine decarbox 99.1 3.7E-09 1.3E-13 121.1 23.5 193 602-809 226-479 (481)
216 1w23_A Phosphoserine aminotran 99.1 1E-09 3.6E-14 119.3 16.4 163 618-807 140-359 (360)
217 3vp6_A Glutamate decarboxylase 99.1 8.5E-09 2.9E-13 119.1 23.9 291 444-807 136-504 (511)
218 2a7v_A Serine hydroxymethyltra 99.1 1.1E-09 3.8E-14 125.9 15.0 153 643-808 220-441 (490)
219 3jzl_A Putative cystathionine 99.0 3.7E-09 1.3E-13 118.9 18.2 206 418-712 31-251 (409)
220 3k40_A Aromatic-L-amino-acid d 99.0 2.2E-08 7.7E-13 114.5 23.0 175 621-809 237-472 (475)
221 2fyf_A PSAT, phosphoserine ami 99.0 3.1E-09 1.1E-13 117.9 15.3 165 619-807 165-397 (398)
222 1rv3_A Serine hydroxymethyltra 98.9 7.8E-09 2.7E-13 118.5 15.9 179 602-807 183-430 (483)
223 2z67_A O-phosphoseryl-tRNA(SEC 98.9 1.1E-08 3.6E-13 116.4 16.6 181 602-805 217-455 (456)
224 1g3q_A MIND ATPase, cell divis 98.9 1.5E-08 5E-13 104.3 15.9 86 221-315 112-202 (237)
225 1js3_A DDC;, DOPA decarboxylas 98.9 9.8E-08 3.4E-12 109.0 23.7 175 621-809 238-475 (486)
226 3hvy_A Cystathionine beta-lyas 98.9 4.9E-08 1.7E-12 110.3 20.1 206 418-712 46-268 (427)
227 3ju7_A Putative PLP-dependent 98.9 3.2E-08 1.1E-12 109.8 17.5 278 418-807 15-374 (377)
228 3i16_A Aluminum resistance pro 98.9 1.1E-07 3.8E-12 107.5 21.9 94 602-712 165-268 (427)
229 1hyq_A MIND, cell division inh 98.8 4.8E-08 1.6E-12 102.3 16.6 101 194-316 97-202 (263)
230 1c4k_A Protein (ornithine deca 98.8 4.7E-08 1.6E-12 117.4 17.8 50 760-809 517-567 (730)
231 2ph1_A Nucleotide-binding prot 98.8 3E-07 1E-11 96.6 20.0 89 220-315 128-231 (262)
232 1wyu_A Glycine dehydrogenase ( 98.7 4.7E-08 1.6E-12 110.2 13.3 165 619-805 196-437 (438)
233 3ea0_A ATPase, para family; al 98.7 1.9E-07 6.4E-12 96.4 16.4 101 192-314 103-209 (245)
234 2c0r_A PSAT, phosphoserine ami 98.7 1.4E-07 4.9E-12 102.8 16.3 161 619-807 142-360 (362)
235 4dzz_A Plasmid partitioning pr 98.7 8.8E-08 3E-12 96.0 12.5 99 195-315 63-171 (206)
236 3q9l_A Septum site-determining 98.6 6.5E-07 2.2E-11 93.1 16.6 103 191-315 96-216 (260)
237 3la6_A Tyrosine-protein kinase 98.6 9.3E-07 3.2E-11 94.6 17.5 78 194-290 188-265 (286)
238 4h51_A Aspartate aminotransfer 98.6 3.6E-07 1.2E-11 103.0 14.7 172 618-809 189-418 (420)
239 3k7y_A Aspartate aminotransfer 98.5 1.1E-06 3.7E-11 98.5 16.9 181 602-807 162-404 (405)
240 3cio_A ETK, tyrosine-protein k 98.5 6E-07 2.1E-11 96.6 14.0 77 195-290 201-277 (299)
241 3bfv_A CAPA1, CAPB2, membrane 98.5 1.1E-06 3.8E-11 93.2 15.2 78 195-291 179-256 (271)
242 1s1m_A CTP synthase; CTP synth 98.4 2.6E-07 9E-12 106.4 8.7 39 37-80 3-42 (545)
243 3end_A Light-independent proto 98.4 1.3E-06 4.3E-11 93.9 12.9 89 219-315 155-249 (307)
244 2vyc_A Biodegradative arginine 98.4 2.9E-06 9.8E-11 102.5 17.1 50 760-809 556-606 (755)
245 3k9g_A PF-32 protein; ssgcid, 98.4 1.2E-06 4.2E-11 91.8 11.7 90 220-317 144-237 (267)
246 3n75_A LDC, lysine decarboxyla 98.4 9.9E-07 3.4E-11 105.4 11.6 165 442-693 194-371 (715)
247 1vco_A CTP synthetase; tetrame 98.4 1.3E-06 4.3E-11 100.9 11.5 40 36-80 11-51 (550)
248 3dm5_A SRP54, signal recogniti 98.3 1.5E-05 5.2E-10 89.9 17.9 36 37-78 100-135 (443)
249 3ug7_A Arsenical pump-driving 98.3 3E-06 1E-10 93.2 11.7 64 251-316 238-318 (349)
250 1ihu_A Arsenical pump-driving 98.2 6.7E-07 2.3E-11 105.1 5.9 95 220-316 440-571 (589)
251 3zq6_A Putative arsenical pump 98.2 1.9E-06 6.4E-11 93.7 8.5 64 251-316 223-303 (324)
252 1wcv_1 SOJ, segregation protei 98.2 6.8E-06 2.3E-10 85.9 11.5 87 220-315 111-211 (257)
253 3kjh_A CO dehydrogenase/acetyl 98.2 5.2E-06 1.8E-10 85.4 10.4 99 196-315 119-220 (254)
254 2woo_A ATPase GET3; tail-ancho 98.2 2.8E-05 9.5E-10 84.7 16.5 38 253-290 224-261 (329)
255 3hl2_A O-phosphoseryl-tRNA(SEC 98.1 3.3E-05 1.1E-09 87.1 15.6 196 602-811 203-464 (501)
256 1cp2_A CP2, nitrogenase iron p 98.1 9.2E-06 3.1E-10 85.1 10.1 90 220-315 115-213 (269)
257 2xj4_A MIPZ; replication, cell 98.1 8E-06 2.7E-10 86.9 9.1 38 36-78 3-40 (286)
258 3cwq_A Para family chromosome 98.0 6.4E-05 2.2E-09 76.2 14.7 88 221-315 68-162 (209)
259 2afh_E Nitrogenase iron protei 98.0 3.4E-05 1.2E-09 81.9 12.6 90 220-315 118-216 (289)
260 3bc8_A O-phosphoseryl-tRNA(SEC 98.0 0.00011 3.9E-09 83.0 17.3 82 602-692 185-269 (450)
261 2xxa_A Signal recognition part 98.0 0.00012 4E-09 82.7 17.3 36 37-78 100-136 (433)
262 1ihu_A Arsenical pump-driving 97.9 4.3E-05 1.5E-09 89.7 13.4 38 253-290 201-238 (589)
263 3e77_A Phosphoserine aminotran 97.9 8.7E-05 3E-09 82.4 13.9 65 739-807 307-374 (377)
264 3qm2_A Phosphoserine aminotran 97.9 5.3E-05 1.8E-09 84.3 11.5 47 761-807 335-384 (386)
265 2oze_A ORF delta'; para, walke 97.8 4.7E-05 1.6E-09 81.1 9.3 88 220-314 154-255 (298)
266 3bwn_A AT1G70560, L-tryptophan 97.7 0.00011 3.8E-09 81.4 11.4 162 619-807 157-386 (391)
267 3igf_A ALL4481 protein; two-do 97.7 0.00013 4.3E-09 80.9 11.6 63 251-316 215-277 (374)
268 3m5u_A Phosphoserine aminotran 97.7 0.0013 4.4E-08 72.4 19.5 46 762-807 311-359 (361)
269 2ffh_A Protein (FFH); SRP54, s 97.7 0.0005 1.7E-08 77.3 15.3 37 36-78 97-133 (425)
270 2woj_A ATPase GET3; tail-ancho 97.5 0.0012 4.1E-08 72.5 15.3 38 253-290 238-275 (354)
271 3iqw_A Tail-anchored protein t 97.5 0.0017 5.9E-08 70.7 16.3 63 252-315 224-305 (334)
272 3fkq_A NTRC-like two-domain pr 97.3 0.00055 1.9E-08 75.6 10.2 39 35-78 141-179 (373)
273 3fwy_A Light-independent proto 97.2 0.0069 2.4E-07 65.3 17.4 36 37-78 48-83 (314)
274 1xjc_A MOBB protein homolog; s 97.2 0.00082 2.8E-08 66.1 8.8 37 36-78 3-39 (169)
275 3io3_A DEHA2D07832P; chaperone 97.1 0.005 1.7E-07 67.4 14.2 63 252-315 233-314 (348)
276 3kl4_A SRP54, signal recogniti 97.0 0.0032 1.1E-07 70.9 12.3 36 37-78 97-132 (433)
277 2hox_A ALLIIN lyase 1; cystein 97.0 0.0015 5E-08 73.3 9.2 43 762-806 374-423 (427)
278 2j37_W Signal recognition part 96.8 0.004 1.4E-07 71.5 11.3 36 37-78 101-136 (504)
279 2px0_A Flagellar biosynthesis 96.7 0.023 7.7E-07 60.7 15.5 38 36-78 104-141 (296)
280 1zu4_A FTSY; GTPase, signal re 96.4 0.028 9.7E-07 60.7 14.0 35 37-77 105-139 (320)
281 3pg5_A Uncharacterized protein 96.3 0.029 9.8E-07 61.5 13.2 37 37-78 1-37 (361)
282 1j8m_F SRP54, signal recogniti 96.3 0.068 2.3E-06 57.0 15.6 36 37-78 98-133 (297)
283 2v3c_C SRP54, signal recogniti 96.2 0.013 4.6E-07 65.9 10.1 36 37-78 99-134 (432)
284 1vma_A Cell division protein F 96.1 0.033 1.1E-06 59.8 12.4 36 37-78 104-139 (306)
285 1ls1_A Signal recognition part 96.1 0.065 2.2E-06 57.1 14.3 37 36-78 97-133 (295)
286 3ez9_A Para; DNA binding, wing 95.8 0.014 4.9E-07 64.8 7.7 44 35-78 109-153 (403)
287 3ez2_A Plasmid partition prote 95.4 0.044 1.5E-06 60.7 10.1 43 35-78 106-150 (398)
288 2yhs_A FTSY, cell division pro 94.2 0.51 1.7E-05 53.8 14.6 34 38-77 294-327 (503)
289 3ou5_A Serine hydroxymethyltra 94.1 0.69 2.4E-05 52.1 15.0 150 643-807 220-440 (490)
290 3bh0_A DNAB-like replicative h 92.6 0.55 1.9E-05 50.2 11.0 36 38-78 68-103 (315)
291 2f1r_A Molybdopterin-guanine d 92.4 0.059 2E-06 52.7 2.8 38 36-79 1-38 (171)
292 3e70_C DPA, signal recognition 92.3 0.98 3.4E-05 48.7 12.7 34 38-77 130-163 (328)
293 3vaa_A Shikimate kinase, SK; s 92.3 0.089 3E-06 52.1 4.1 47 6-62 3-49 (199)
294 1np6_A Molybdopterin-guanine d 91.9 0.14 4.8E-06 50.2 4.9 37 36-78 5-41 (174)
295 3bgw_A DNAB-like replicative h 91.2 0.8 2.7E-05 51.5 10.8 35 39-78 198-232 (444)
296 4a1f_A DNAB helicase, replicat 90.7 0.26 9E-06 53.5 6.0 35 39-78 47-81 (338)
297 2cdn_A Adenylate kinase; phosp 88.7 0.41 1.4E-05 47.1 5.1 39 23-62 6-44 (201)
298 1nks_A Adenylate kinase; therm 88.4 0.42 1.4E-05 46.1 4.9 35 37-77 1-35 (194)
299 2q6t_A DNAB replication FORK h 87.5 2.8 9.5E-05 46.9 11.6 36 39-78 201-236 (444)
300 1q57_A DNA primase/helicase; d 85.4 4.7 0.00016 45.7 12.3 35 39-78 243-278 (503)
301 1e6c_A Shikimate kinase; phosp 84.8 0.62 2.1E-05 44.2 3.8 26 36-62 1-26 (173)
302 3hr8_A Protein RECA; alpha and 84.5 7.2 0.00025 42.4 12.6 34 39-78 63-96 (356)
303 3trf_A Shikimate kinase, SK; a 84.3 0.68 2.3E-05 44.6 3.9 26 36-62 4-29 (185)
304 3kb2_A SPBC2 prophage-derived 84.1 0.67 2.3E-05 43.8 3.8 25 37-62 1-25 (173)
305 3nva_A CTP synthase; rossman f 84.1 2.1 7E-05 48.9 8.2 38 36-78 2-40 (535)
306 2w58_A DNAI, primosome compone 83.7 1.1 3.8E-05 43.8 5.2 35 38-78 55-89 (202)
307 1ukz_A Uridylate kinase; trans 83.3 0.83 2.8E-05 44.8 4.1 29 33-62 11-39 (203)
308 1via_A Shikimate kinase; struc 83.3 0.73 2.5E-05 44.2 3.6 26 36-62 3-28 (175)
309 2b8t_A Thymidine kinase; deoxy 82.5 1 3.4E-05 45.9 4.4 36 39-80 14-49 (223)
310 1xx6_A Thymidine kinase; NESG, 82.2 1.1 3.7E-05 44.5 4.4 36 39-80 10-45 (191)
311 3t61_A Gluconokinase; PSI-biol 82.2 0.99 3.4E-05 44.3 4.2 28 34-62 15-42 (202)
312 1qhx_A CPT, protein (chloramph 81.7 1 3.5E-05 43.0 4.0 24 38-62 4-27 (178)
313 1zuh_A Shikimate kinase; alpha 81.1 1.3 4.4E-05 42.0 4.4 26 36-62 6-31 (168)
314 2orw_A Thymidine kinase; TMTK, 81.0 1.4 4.6E-05 43.3 4.7 36 39-80 5-40 (184)
315 2iyv_A Shikimate kinase, SK; t 80.9 1.3 4.3E-05 42.7 4.4 24 38-62 3-26 (184)
316 3iij_A Coilin-interacting nucl 80.7 1.3 4.5E-05 42.4 4.4 25 37-62 11-35 (180)
317 3a8t_A Adenylate isopentenyltr 80.1 0.71 2.4E-05 50.1 2.4 23 39-62 42-64 (339)
318 2r6a_A DNAB helicase, replicat 79.8 7.9 0.00027 43.3 11.1 37 38-78 203-239 (454)
319 2yvu_A Probable adenylyl-sulfa 79.7 1.7 5.7E-05 42.0 4.8 34 39-78 15-48 (186)
320 1yrb_A ATP(GTP)binding protein 78.7 2.7 9.2E-05 42.7 6.3 35 38-78 14-48 (262)
321 1xp8_A RECA protein, recombina 78.6 18 0.00061 39.4 13.1 34 39-78 76-109 (366)
322 1w4r_A Thymidine kinase; type 78.0 1.9 6.4E-05 43.0 4.6 38 35-79 18-56 (195)
323 2kjq_A DNAA-related protein; s 77.5 1.7 5.8E-05 41.0 4.0 36 37-78 36-71 (149)
324 1kht_A Adenylate kinase; phosp 77.2 2.5 8.5E-05 40.5 5.2 24 38-62 4-27 (192)
325 1ak2_A Adenylate kinase isoenz 76.7 1.8 6.3E-05 43.6 4.2 31 31-62 10-40 (233)
326 2vli_A Antibiotic resistance p 76.3 1.2 4E-05 42.7 2.5 25 37-62 5-29 (183)
327 3io5_A Recombination and repai 76.0 13 0.00046 39.8 10.8 34 39-78 30-65 (333)
328 1qf9_A UMP/CMP kinase, protein 75.8 1.9 6.4E-05 41.4 3.8 25 37-62 6-30 (194)
329 1y63_A LMAJ004144AAA protein; 75.8 2.2 7.6E-05 41.3 4.4 25 37-62 10-34 (184)
330 1kag_A SKI, shikimate kinase I 75.6 1.9 6.5E-05 40.8 3.8 25 37-62 4-28 (173)
331 1g5t_A COB(I)alamin adenosyltr 75.6 2.1 7.1E-05 42.7 4.1 37 37-78 27-63 (196)
332 2plr_A DTMP kinase, probable t 75.3 3 0.0001 40.6 5.3 23 39-62 6-28 (213)
333 2zts_A Putative uncharacterize 75.2 2.8 9.5E-05 42.0 5.1 36 39-78 31-66 (251)
334 3ec2_A DNA replication protein 74.9 1.7 5.8E-05 41.7 3.2 37 37-78 38-74 (180)
335 2if2_A Dephospho-COA kinase; a 74.9 2.4 8.3E-05 41.4 4.5 24 37-62 1-24 (204)
336 2z0h_A DTMP kinase, thymidylat 74.5 2 6.8E-05 41.5 3.7 33 40-78 3-35 (197)
337 2ze6_A Isopentenyl transferase 74.2 1.8 6.1E-05 44.6 3.4 25 37-62 1-25 (253)
338 3pzx_A Formate--tetrahydrofola 73.7 2.8 9.6E-05 47.3 4.9 36 37-77 57-95 (557)
339 3bos_A Putative DNA replicatio 73.7 3 0.0001 41.3 4.8 36 37-78 52-87 (242)
340 2qgz_A Helicase loader, putati 73.4 2.3 7.8E-05 45.2 4.1 37 37-78 152-188 (308)
341 3a4m_A L-seryl-tRNA(SEC) kinas 73.1 2.6 9E-05 43.3 4.4 33 37-75 4-36 (260)
342 3p32_A Probable GTPase RV1496/ 72.7 3.2 0.00011 44.9 5.1 36 37-78 79-114 (355)
343 3cmu_A Protein RECA, recombina 72.6 23 0.0008 46.8 13.7 35 39-78 733-767 (2050)
344 2r8r_A Sensor protein; KDPD, P 72.3 3.5 0.00012 42.1 4.9 33 41-78 9-41 (228)
345 2c95_A Adenylate kinase 1; tra 71.9 3.1 0.0001 40.1 4.3 25 37-62 9-33 (196)
346 3crm_A TRNA delta(2)-isopenten 71.8 2.2 7.6E-05 45.9 3.5 24 38-62 6-29 (323)
347 2wwf_A Thymidilate kinase, put 71.7 4.7 0.00016 39.3 5.7 35 38-78 11-45 (212)
348 2j9r_A Thymidine kinase; TK1, 71.2 4.2 0.00014 41.1 5.2 36 40-81 31-66 (214)
349 2rhm_A Putative kinase; P-loop 70.9 2.8 9.6E-05 40.3 3.8 23 39-62 7-29 (193)
350 1gtv_A TMK, thymidylate kinase 70.7 1.2 4.2E-05 43.7 1.1 34 39-78 2-35 (214)
351 2orv_A Thymidine kinase; TP4A 70.1 4.4 0.00015 41.5 5.1 37 39-81 21-57 (234)
352 1zak_A Adenylate kinase; ATP:A 69.6 3.4 0.00012 41.0 4.2 25 37-62 5-29 (222)
353 1ly1_A Polynucleotide kinase; 69.3 2.8 9.5E-05 39.7 3.3 21 39-60 4-24 (181)
354 2bwj_A Adenylate kinase 5; pho 69.1 2.9 0.0001 40.3 3.5 24 38-62 13-36 (199)
355 3t15_A Ribulose bisphosphate c 69.1 7.8 0.00027 40.6 7.0 33 37-78 36-68 (293)
356 2pbr_A DTMP kinase, thymidylat 68.9 2.8 9.6E-05 40.2 3.3 34 39-78 2-35 (195)
357 3ake_A Cytidylate kinase; CMP 68.6 3.6 0.00012 40.0 4.0 24 38-62 3-26 (208)
358 3lw7_A Adenylate kinase relate 68.4 3.8 0.00013 38.2 4.0 22 39-62 3-24 (179)
359 2pt5_A Shikimate kinase, SK; a 67.9 4.3 0.00015 38.1 4.3 23 39-62 2-24 (168)
360 1nn5_A Similar to deoxythymidy 67.2 5.6 0.00019 38.8 5.1 34 39-78 11-44 (215)
361 1zd8_A GTP:AMP phosphotransfer 67.1 3.7 0.00012 41.0 3.8 25 37-62 7-31 (227)
362 4eun_A Thermoresistant glucoki 66.5 3.7 0.00013 40.1 3.7 23 39-62 31-53 (200)
363 1uf9_A TT1252 protein; P-loop, 66.5 3.6 0.00012 39.8 3.5 24 36-60 7-30 (203)
364 2pez_A Bifunctional 3'-phospho 65.8 4.1 0.00014 38.9 3.7 33 39-77 7-39 (179)
365 2f6r_A COA synthase, bifunctio 65.8 6.1 0.00021 41.2 5.3 28 33-62 71-98 (281)
366 1l8q_A Chromosomal replication 65.5 4.8 0.00016 42.5 4.5 36 37-78 37-72 (324)
367 2c5m_A CTP synthase; cytidine 65.5 4.4 0.00015 41.9 3.9 39 35-78 21-60 (294)
368 2jaq_A Deoxyguanosine kinase; 65.4 3.9 0.00013 39.5 3.5 23 39-62 2-24 (205)
369 2p65_A Hypothetical protein PF 64.4 4.6 0.00016 38.0 3.8 26 37-63 43-68 (187)
370 3foz_A TRNA delta(2)-isopenten 64.4 4.1 0.00014 43.6 3.6 24 38-62 11-34 (316)
371 1cke_A CK, MSSA, protein (cyti 64.4 5.1 0.00018 39.6 4.2 24 38-62 6-29 (227)
372 1kgd_A CASK, peripheral plasma 64.1 5 0.00017 38.6 4.0 24 38-62 6-29 (180)
373 2vo1_A CTP synthase 1; pyrimid 63.7 5.2 0.00018 41.6 4.1 39 35-78 21-60 (295)
374 1rj9_A FTSY, signal recognitio 63.6 10 0.00034 40.2 6.5 35 37-77 102-136 (304)
375 3d3q_A TRNA delta(2)-isopenten 63.5 4.1 0.00014 44.1 3.5 23 39-62 9-31 (340)
376 3v9p_A DTMP kinase, thymidylat 63.4 3.4 0.00012 42.0 2.7 33 40-78 28-64 (227)
377 1a7j_A Phosphoribulokinase; tr 63.4 3 0.0001 44.0 2.3 24 38-62 6-29 (290)
378 1knq_A Gluconate kinase; ALFA/ 63.2 5.2 0.00018 37.9 3.9 25 37-62 8-32 (175)
379 1aky_A Adenylate kinase; ATP:A 62.5 5.5 0.00019 39.4 4.1 25 37-62 4-28 (220)
380 3uie_A Adenylyl-sulfate kinase 62.4 6.1 0.00021 38.6 4.3 24 38-62 26-49 (200)
381 1jjv_A Dephospho-COA kinase; P 62.1 4.3 0.00015 39.7 3.1 23 37-60 2-24 (206)
382 3cm0_A Adenylate kinase; ATP-b 62.1 4.9 0.00017 38.4 3.5 23 39-62 6-28 (186)
383 1jbk_A CLPB protein; beta barr 62.0 5.8 0.0002 37.2 4.0 25 37-62 43-67 (195)
384 2qt1_A Nicotinamide riboside k 61.9 4.2 0.00015 39.8 3.0 25 37-62 21-45 (207)
385 3con_A GTPase NRAS; structural 61.8 4.5 0.00015 38.5 3.2 21 39-60 23-43 (190)
386 1uj2_A Uridine-cytidine kinase 61.6 4.8 0.00016 41.0 3.5 25 37-62 22-46 (252)
387 1rz3_A Hypothetical protein rb 61.6 6 0.00021 38.7 4.1 34 38-77 23-56 (201)
388 3tau_A Guanylate kinase, GMP k 61.1 5.2 0.00018 39.5 3.6 24 38-62 9-32 (208)
389 2dr3_A UPF0273 protein PH0284; 60.7 7.5 0.00026 38.7 4.7 34 39-78 25-58 (247)
390 2qor_A Guanylate kinase; phosp 60.5 5.1 0.00018 39.3 3.4 23 39-62 14-36 (204)
391 2wsm_A Hydrogenase expression/ 60.3 8.6 0.00029 37.7 5.0 35 37-78 30-64 (221)
392 3fb4_A Adenylate kinase; psych 60.0 5.8 0.0002 39.0 3.7 23 39-62 2-24 (216)
393 3be4_A Adenylate kinase; malar 60.0 6.4 0.00022 39.0 4.0 24 38-62 6-29 (217)
394 2qz4_A Paraplegin; AAA+, SPG7, 59.7 9.4 0.00032 38.4 5.3 25 37-62 39-63 (262)
395 4hlc_A DTMP kinase, thymidylat 59.6 10 0.00035 37.6 5.4 32 40-78 5-36 (205)
396 3dl0_A Adenylate kinase; phosp 57.5 6.3 0.00022 38.7 3.5 23 39-62 2-24 (216)
397 2grj_A Dephospho-COA kinase; T 57.4 7.7 0.00026 38.2 4.0 24 38-62 13-36 (192)
398 3hjn_A DTMP kinase, thymidylat 57.4 4.7 0.00016 39.8 2.5 31 42-78 5-35 (197)
399 3n70_A Transport activator; si 57.2 8.6 0.0003 35.5 4.1 23 39-62 26-48 (145)
400 3h4m_A Proteasome-activating n 57.2 9.6 0.00033 39.1 4.9 25 37-62 51-75 (285)
401 3eph_A TRNA isopentenyltransfe 57.0 6.3 0.00022 43.7 3.6 24 38-62 3-26 (409)
402 2w0m_A SSO2452; RECA, SSPF, un 56.6 7.8 0.00027 38.0 4.0 35 38-78 24-58 (235)
403 1e4v_A Adenylate kinase; trans 56.5 9.2 0.00032 37.6 4.5 23 39-62 2-24 (214)
404 2bjv_A PSP operon transcriptio 56.5 8.6 0.00029 39.2 4.4 34 38-77 30-63 (265)
405 1d2n_A N-ethylmaleimide-sensit 56.3 8.8 0.0003 39.3 4.4 25 37-62 64-88 (272)
406 1ex7_A Guanylate kinase; subst 56.2 6.8 0.00023 38.5 3.4 23 39-62 3-25 (186)
407 2qmh_A HPR kinase/phosphorylas 56.2 2.6 9.1E-05 42.2 0.4 25 37-62 34-58 (205)
408 2v54_A DTMP kinase, thymidylat 56.0 7.1 0.00024 37.8 3.5 23 39-62 6-28 (204)
409 1u94_A RECA protein, recombina 55.9 9.1 0.00031 41.6 4.6 35 38-78 64-98 (356)
410 1gvn_B Zeta; postsegregational 55.7 9.9 0.00034 39.8 4.7 23 39-62 35-57 (287)
411 2a5j_A RAS-related protein RAB 54.9 11 0.00037 36.0 4.6 20 39-59 23-42 (191)
412 2p5t_B PEZT; postsegregational 54.5 7.1 0.00024 39.8 3.3 24 38-62 33-56 (253)
413 3cmw_A Protein RECA, recombina 54.3 68 0.0023 41.9 12.9 35 39-78 733-767 (1706)
414 1lv7_A FTSH; alpha/beta domain 54.1 13 0.00046 37.5 5.4 25 37-62 45-69 (257)
415 3syl_A Protein CBBX; photosynt 53.2 12 0.0004 38.9 4.8 26 37-63 67-92 (309)
416 2gf9_A RAS-related protein RAB 53.0 11 0.00038 35.8 4.3 21 38-59 23-43 (189)
417 3tlx_A Adenylate kinase 2; str 52.8 8.7 0.0003 39.0 3.7 23 39-62 31-53 (243)
418 4e22_A Cytidylate kinase; P-lo 52.7 9.6 0.00033 38.9 4.0 24 38-62 28-51 (252)
419 3b9q_A Chloroplast SRP recepto 52.6 12 0.00041 39.5 4.8 35 37-77 100-134 (302)
420 1ofh_A ATP-dependent HSL prote 52.4 14 0.00046 38.1 5.2 25 37-62 50-74 (310)
421 3nwj_A ATSK2; P loop, shikimat 52.4 9.6 0.00033 39.2 3.9 25 37-62 48-72 (250)
422 1fnn_A CDC6P, cell division co 52.2 13 0.00046 39.5 5.2 24 38-62 45-68 (389)
423 3cmu_A Protein RECA, recombina 52.1 79 0.0027 42.0 13.0 35 39-78 384-418 (2050)
424 2vos_A Folylpolyglutamate synt 51.8 9.4 0.00032 43.2 4.0 34 37-78 64-97 (487)
425 1g8f_A Sulfate adenylyltransfe 51.4 11 0.00037 43.1 4.5 23 39-62 397-419 (511)
426 1z6g_A Guanylate kinase; struc 51.4 9.7 0.00033 37.9 3.7 39 22-62 9-47 (218)
427 1tev_A UMP-CMP kinase; ploop, 51.3 11 0.00038 35.8 4.0 23 39-62 5-27 (196)
428 2chg_A Replication factor C sm 51.3 11 0.00037 36.3 3.9 24 39-63 40-63 (226)
429 4edh_A DTMP kinase, thymidylat 51.3 17 0.0006 36.2 5.5 33 40-78 9-41 (213)
430 2bbw_A Adenylate kinase 4, AK4 51.2 11 0.00037 38.0 4.1 25 37-62 27-51 (246)
431 1ltq_A Polynucleotide kinase; 50.9 8.6 0.00029 39.9 3.3 23 39-62 4-26 (301)
432 3r20_A Cytidylate kinase; stru 50.8 11 0.00037 38.5 3.9 24 38-62 10-33 (233)
433 1um8_A ATP-dependent CLP prote 50.6 15 0.00051 39.6 5.3 25 37-62 72-96 (376)
434 3uk6_A RUVB-like 2; hexameric 50.6 22 0.00075 37.8 6.6 24 38-62 71-94 (368)
435 2dyk_A GTP-binding protein; GT 50.3 9.3 0.00032 34.8 3.1 22 37-59 1-22 (161)
436 1m7g_A Adenylylsulfate kinase; 50.0 11 0.00037 37.1 3.8 34 39-77 27-60 (211)
437 2xb4_A Adenylate kinase; ATP-b 49.6 10 0.00035 37.8 3.5 23 39-62 2-24 (223)
438 2j41_A Guanylate kinase; GMP, 49.5 8.8 0.0003 37.1 3.0 24 38-62 7-30 (207)
439 3tqf_A HPR(Ser) kinase; transf 49.5 9.5 0.00033 37.4 3.1 23 38-61 17-39 (181)
440 3eie_A Vacuolar protein sortin 49.3 15 0.0005 38.8 4.9 25 37-62 51-75 (322)
441 1sxj_A Activator 1 95 kDa subu 49.1 32 0.0011 38.9 8.0 33 37-78 77-109 (516)
442 2ew1_A RAS-related protein RAB 49.1 11 0.00036 36.9 3.5 21 39-60 28-48 (201)
443 1zp6_A Hypothetical protein AT 49.0 11 0.00037 36.0 3.5 24 38-62 10-33 (191)
444 3a00_A Guanylate kinase, GMP k 48.8 10 0.00035 36.5 3.3 23 39-62 3-25 (186)
445 1odf_A YGR205W, hypothetical 3 48.6 10 0.00035 39.8 3.5 24 39-63 33-56 (290)
446 3tr0_A Guanylate kinase, GMP k 48.6 11 0.00039 36.3 3.6 24 38-62 8-31 (205)
447 2gco_A H9, RHO-related GTP-bin 48.4 12 0.0004 36.2 3.6 22 37-59 25-46 (201)
448 4eaq_A DTMP kinase, thymidylat 48.4 19 0.00065 36.2 5.3 32 39-77 28-59 (229)
449 2og2_A Putative signal recogni 48.3 16 0.00054 39.7 5.0 35 37-77 157-191 (359)
450 1vht_A Dephospho-COA kinase; s 47.7 12 0.00042 36.7 3.7 22 39-62 6-27 (218)
451 1cr0_A DNA primase/helicase; R 47.6 14 0.00049 38.2 4.4 35 39-78 37-71 (296)
452 3hws_A ATP-dependent CLP prote 47.5 16 0.00056 39.1 5.0 25 37-62 51-75 (363)
453 3nrs_A Dihydrofolate:folylpoly 47.5 14 0.00048 41.1 4.5 35 36-78 51-85 (437)
454 3e1s_A Exodeoxyribonuclease V, 47.5 24 0.00082 40.8 6.6 36 38-79 205-240 (574)
455 1w78_A FOLC bifunctional prote 47.4 12 0.00041 41.3 4.0 34 37-78 49-82 (422)
456 1x6v_B Bifunctional 3'-phospho 47.3 14 0.00049 43.2 4.7 33 39-77 54-86 (630)
457 2hf9_A Probable hydrogenase ni 47.0 20 0.00067 35.1 5.1 24 38-62 39-62 (226)
458 4ag6_A VIRB4 ATPase, type IV s 46.9 17 0.00057 39.5 5.0 36 38-79 36-71 (392)
459 2z4s_A Chromosomal replication 46.9 12 0.00041 41.7 3.9 36 37-78 130-167 (440)
460 1njg_A DNA polymerase III subu 46.8 13 0.00045 36.0 3.8 25 38-63 46-70 (250)
461 3asz_A Uridine kinase; cytidin 46.7 13 0.00043 36.3 3.6 24 38-62 7-30 (211)
462 3pfi_A Holliday junction ATP-d 46.4 18 0.00062 38.1 5.0 24 38-62 56-79 (338)
463 3e2i_A Thymidine kinase; Zn-bi 46.4 16 0.00055 36.9 4.3 35 40-80 31-65 (219)
464 1lvg_A Guanylate kinase, GMP k 46.3 13 0.00044 36.3 3.6 24 38-62 5-28 (198)
465 2r2a_A Uncharacterized protein 46.1 23 0.00079 34.9 5.4 23 39-62 7-29 (199)
466 1j6u_A UDP-N-acetylmuramate-al 45.9 12 0.00042 42.0 3.8 33 37-77 114-146 (469)
467 3b9p_A CG5977-PA, isoform A; A 45.7 14 0.00048 38.1 4.0 25 37-62 54-78 (297)
468 3c8u_A Fructokinase; YP_612366 45.6 12 0.0004 36.8 3.2 24 39-63 24-47 (208)
469 4fcw_A Chaperone protein CLPB; 45.5 16 0.00056 37.7 4.5 34 39-78 49-82 (311)
470 1ixz_A ATP-dependent metallopr 45.5 13 0.00045 37.4 3.6 24 38-62 50-73 (254)
471 3d8b_A Fidgetin-like protein 1 44.7 19 0.00065 38.7 4.9 26 36-62 116-141 (357)
472 2fz4_A DNA repair protein RAD2 44.4 19 0.00066 36.2 4.7 33 38-79 109-141 (237)
473 1q3t_A Cytidylate kinase; nucl 44.4 17 0.00058 36.3 4.2 25 37-62 16-40 (236)
474 3cf0_A Transitional endoplasmi 44.3 21 0.00071 37.3 5.1 25 37-62 49-73 (301)
475 1jbw_A Folylpolyglutamate synt 43.6 15 0.00052 40.6 4.0 35 36-78 38-72 (428)
476 3pvs_A Replication-associated 43.5 18 0.00063 40.3 4.7 24 38-62 51-74 (447)
477 1ojl_A Transcriptional regulat 43.3 20 0.00069 37.6 4.7 24 38-62 26-49 (304)
478 3tqc_A Pantothenate kinase; bi 43.3 21 0.00071 38.1 4.9 23 39-62 94-116 (321)
479 2zr9_A Protein RECA, recombina 43.2 19 0.00067 38.7 4.7 34 39-78 63-96 (349)
480 3exa_A TRNA delta(2)-isopenten 43.0 14 0.00049 39.4 3.5 23 39-62 5-27 (322)
481 3vfd_A Spastin; ATPase, microt 42.7 22 0.00074 38.6 5.1 25 37-62 148-172 (389)
482 2c07_A 3-oxoacyl-(acyl-carrier 42.7 18 0.00061 37.3 4.2 54 14-77 20-74 (285)
483 4iin_A 3-ketoacyl-acyl carrier 42.7 10 0.00035 38.8 2.3 58 8-77 2-59 (271)
484 2r62_A Cell division protease 42.4 10 0.00034 38.6 2.2 24 38-62 45-68 (268)
485 3te6_A Regulatory protein SIR3 42.3 13 0.00046 39.6 3.2 26 37-63 45-70 (318)
486 2h92_A Cytidylate kinase; ross 42.2 17 0.0006 35.5 3.9 23 39-62 5-27 (219)
487 1m8p_A Sulfate adenylyltransfe 41.9 15 0.0005 42.6 3.7 33 39-77 398-431 (573)
488 2qby_B CDC6 homolog 3, cell di 41.7 16 0.00056 38.9 3.8 24 38-62 46-69 (384)
489 1hqc_A RUVB; extended AAA-ATPa 41.6 18 0.00063 37.6 4.1 24 38-62 39-62 (324)
490 2bdt_A BH3686; alpha-beta prot 41.5 14 0.00048 35.3 2.9 23 39-62 4-26 (189)
491 2axn_A 6-phosphofructo-2-kinas 41.4 26 0.00088 40.0 5.6 34 39-78 37-70 (520)
492 1tue_A Replication protein E1; 41.0 16 0.00055 36.7 3.3 25 37-62 58-82 (212)
493 2qp9_X Vacuolar protein sortin 40.9 24 0.00082 37.9 5.0 25 37-62 84-108 (355)
494 2ocp_A DGK, deoxyguanosine kin 40.8 16 0.00054 36.7 3.3 23 39-62 4-26 (241)
495 3lv8_A DTMP kinase, thymidylat 40.6 22 0.00076 36.1 4.4 34 39-78 29-63 (236)
496 3ld9_A DTMP kinase, thymidylat 40.5 20 0.00068 36.2 4.0 34 39-78 23-58 (223)
497 1p5z_B DCK, deoxycytidine kina 40.2 7 0.00024 40.0 0.5 25 37-62 24-48 (263)
498 2gks_A Bifunctional SAT/APS ki 40.1 20 0.00067 41.2 4.3 33 39-77 374-406 (546)
499 1nlf_A Regulatory protein REPA 39.7 25 0.00084 36.1 4.7 24 38-62 31-54 (279)
500 2c9o_A RUVB-like 1; hexameric 39.6 26 0.0009 39.0 5.2 24 38-62 64-87 (456)
No 1
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=2.7e-116 Score=1069.08 Aligned_cols=755 Identities=70% Similarity=1.170 Sum_probs=600.9
Q ss_pred CCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCceeEEceeccCCCCCCchHHHHHhccCCc
Q 003466 27 HPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLS 101 (818)
Q Consensus 27 ~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~ 101 (818)
-+.|+.++.++++|||+||+||||||+||+|||++|+ ++ |.+|+|||||++|+..++|..++++.++++.
T Consensus 24 ~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~~~~~~~~~~~~~~~~~~ 98 (831)
T 4a0g_A 24 SVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLS 98 (831)
T ss_dssp ---CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECSTTTCCHHHHHHHHHHHHH
T ss_pred CCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCCCcCcchHHHHHhhcccc
Confidence 3445567788999999999999999999999999995 77 9999999999999888888888888765543
Q ss_pred cccCCCcccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChH
Q 003466 102 LRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPH 181 (818)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 181 (818)
.+|+ ....++|..+......+.....+++..++++ .+++.++++++. ....+.+.++|.|++|+|||
T Consensus 99 ~~n~--da~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~sp~ 165 (831)
T 4a0g_A 99 LRRQ--IPISISNSVLHSSLPAAKSLGLNVEVSESGM------CSLNFRDEKTVT-----GAPELLCKTLYAWEAAISPH 165 (831)
T ss_dssp HHHT--CCCEEEEEEEEEEHHHHHHHTCCCCBCTTSE------EEEEEEEEECCT-----TSCEEEEEEEEECSSSSCHH
T ss_pred ccch--hHHHHHHHHcCCChhhHhhcccCCcccCCce------Eeeccccccccc-----ccccccccceeeecCCcCHH
Confidence 3332 2233444444333333332333444444442 223333333332 33457789999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCC
Q 003466 182 LAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRL 261 (818)
Q Consensus 182 ~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~ 261 (818)
++++.+ +..+..+.|.+.|.+..++. ++.+......+|++|||||||+++|+..+.+++|||+.+++|||||+++++
T Consensus 166 ~aa~~~-~~~~~~~~i~~~~~~~l~~~--a~~~~~~~~~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~l 242 (831)
T 4a0g_A 166 LAAERE-NATVEDSVVLQMIEKCLKEE--MECGVKSEKSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 242 (831)
T ss_dssp HHHHHT-TCCCCHHHHHHHHHHHHHHH--C---------CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCST
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHhh--hhccccccccCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCC
Confidence 999999 88899999999999844320 000000001389999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCCEEecCCCCCCCcchhhhhhhhhhhhHHHHHHHHHH
Q 003466 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLL 341 (818)
Q Consensus 262 g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgiP~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~ 341 (818)
|++|++++++++++.++++|+|||+|+....+.+.+.+++++++||..||++|.+...+|.+|++.....++.+++.+..
T Consensus 243 G~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~~~~~l~~~~~~~~~~~~~~~~~l~~ 322 (831)
T 4a0g_A 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVL 322 (831)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCCTTCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCCCHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999998899999999886545554444444455578999999988889999999999
Q ss_pred HHHHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHH
Q 003466 342 AYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421 (818)
Q Consensus 342 ~~~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V 421 (818)
.+.+|++++++|.+++++++|||||+++.+....|++|++++|.++|+||.|||.++++|||++|||||+++||+.||+|
T Consensus 323 ~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i 402 (831)
T 4a0g_A 323 ANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAEL 402 (831)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHH
Confidence 99999999999999999999999999987755678999999999999999999866678999999999999999879999
Q ss_pred HHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCcc
Q 003466 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (818)
Q Consensus 422 ~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~ 501 (818)
++|+++|++++.|+++.+++++++.+|||+|++++|.+++++|||+||||||||+|||+|+|+|++++|+.. .+..
T Consensus 403 ~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~----~~~~ 478 (831)
T 4a0g_A 403 AREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE----ATEE 478 (831)
T ss_dssp HHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC----------
T ss_pred HHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCc----cccc
Confidence 999999999999987777889999999999999998665789999999999999999999777877665400 0000
Q ss_pred ccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccccccc
Q 003466 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC 581 (818)
Q Consensus 502 ~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n 581 (818)
..++|.+||+++++|||+|++++++|+...|+..++.+|+.+.++++++|...+.+++++++.|++|+.. ..++.+|+
T Consensus 479 ~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~--~~~~~~~~ 556 (831)
T 4a0g_A 479 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEI--APEYGTFT 556 (831)
T ss_dssp ---CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCC--CSSTTEES
T ss_pred cccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccc--cccccccc
Confidence 1136889999999999999999999998877764346777777777777776666778889999877532 12233567
Q ss_pred CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEee
Q 003466 582 SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDE 661 (818)
Q Consensus 582 d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DE 661 (818)
|.++.|....+.+.+...|.+.|++.|++.+...+++++||||+|||+||+||++++|++||++|+++|++||++||+||
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DE 636 (831)
T 4a0g_A 557 SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDE 636 (831)
T ss_dssp CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 65555544344455667788889988864211134689999999997699999999999999999999999999999999
Q ss_pred cccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh------H-------------------
Q 003466 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS------K------------------- 716 (818)
Q Consensus 662 V~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~------~------------------- 716 (818)
|+|||||||++|+++++||.|||+|+||+|||||+|+|++++++++++.|.... +
T Consensus 637 V~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~ 716 (831)
T 4a0g_A 637 VFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ 716 (831)
T ss_dssp TTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH
T ss_pred CccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886532 0
Q ss_pred HH--------------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee
Q 003466 717 LW--------------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776 (818)
Q Consensus 717 ~~--------------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p 776 (818)
++ .+.+.+.+.+++.|.+|||.|+|+++++..+.....++...+..+++.|+++||+++|
T Consensus 717 ~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p 796 (831)
T 4a0g_A 717 WFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP 796 (831)
T ss_dssp HHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe
Confidence 11 1134456678899999999999999999865333334445678899999999999999
Q ss_pred cCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 777 LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 777 ~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+++|||+||+++|++|||+++++|+++++++
T Consensus 797 ~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 797 LGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp BTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988654
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=3.3e-75 Score=668.34 Aligned_cols=401 Identities=17% Similarity=0.208 Sum_probs=334.8
Q ss_pred hccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 350 ~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
.+.+.+++..++|||||+++.+.+..|++|++++|. ||||.||| +|||+++|||++++||+ ||+|++|+++|+
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~ 96 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGP--YIVDVNGR----RYLDANSGLWNMVAGFD-HKGLIDAAKAQY 96 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETT--EEEETTCC----EEEETTTTTTTCTTCSC-CHHHHHHHHHHH
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecC--EEEeCCCC----EEEEcccCHHHhhccCC-CHHHHHHHHHHH
Confidence 345678888999999999987666789999999997 79999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
+++.+.. +.+..+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~------------~~r~~ 162 (473)
T 4e3q_A 97 ERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGK------------PQKRK 162 (473)
T ss_dssp HHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCcce
Confidence 9987653 34557899999999999999865 789999999999999999999 777777665 78899
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+|+++|||+|.+++++++... +.. +.+|. ++..+++.|++++. ++.
T Consensus 163 ii~~~~~yHG~t~~a~s~tg~~~-~~~------------~~~~~----~~~~~~~~p~~~~~----------~~~----- 210 (473)
T 4e3q_A 163 ILTRWNAYHGVTAVSASMTGKPY-NSV------------FGLPL----PGFVHLTCPHYWRY----------GEE----- 210 (473)
T ss_dssp EEEETTCCCCSSHHHHHHSCCGG-GGG------------GTCSC----TTEEEECCCCHHHH----------SCT-----
T ss_pred EEEeeceECCCcccccccccccc-ccc------------cCCCC----CcccccCCCccccc----------ccc-----
Confidence 99999999999999999998642 221 11111 34567788877753 111
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
...++.+...+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||
T Consensus 211 -~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 211 -GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred -cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 112234455556777777765 56789999999998 999999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh-------H-------------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-------K------------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~-------~------------------------- 716 (818)
||++|+++++||+|||+|+||+|||||+|+||+++++++++.+.... +
T Consensus 285 tG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~ 364 (473)
T 4e3q_A 285 TGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG 364 (473)
T ss_dssp TSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred ccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999998763210 0
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC---chHHHHHHHHHHHhCCceEeecCCEEEE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---GSLYAASLLKKLREDGVYMRPLGNVIYL 783 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~~~~a~~~~~~l~e~Gvlv~p~g~~ir~ 783 (818)
++.++ ++.+.+++.|.+|||.|+|++++++.+.....+ +...+..+.+.|+++||++++.|++++|
T Consensus 365 l~~~~~~~g~~l~~~-L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~i~l 443 (473)
T 4e3q_A 365 LAENVRRLAPRFEER-LKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVL 443 (473)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEETTEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecCCEEEE
Confidence 11122 234556788999999999999999877543222 2345778999999999999999999999
Q ss_pred ECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 784 MCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 784 ~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.||+++|++|||+++++|+++|+++.+
T Consensus 444 ~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 444 CPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988653
No 3
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=1.1e-68 Score=612.00 Aligned_cols=365 Identities=23% Similarity=0.237 Sum_probs=296.7
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.|..+....+++..+|+|+|++
T Consensus 46 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 118 (456)
T 4atq_A 46 VPVYVEDADGG--IIRDVDGN----SFIDLGSGIAVTSVGAS-DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNR 118 (456)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCCeEEeeecC--EEEeCCCC----EEEEccccHHHHhcCCC-CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHH
Confidence 46789999997 79999999 99999999999999999 9999999999999998877666778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC-CC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-~~ 533 (818)
++|.+.+++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++... ++
T Consensus 119 ~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~r------------------~~ii~~~~~yHG~t~~als~t~~~~~~~ 179 (456)
T 4atq_A 119 LTPGDHAKRTVLFNSGAEAVENAVKVA-RLATGR------------------DAVVAFDHAYHGRTNLTMALTAKAMPYK 179 (456)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhcC------------------CeEEEEecccCCccccccccccCccccc
Confidence 987655789999999999999999999 788764 5999999999999999999998653 22
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++ ..+++.+++.|++++.. .++ ....+....+.+.+++.
T Consensus 180 ~~--------~~p--------~~~~~~~~p~~~~~~~~--------~~~--------~~~~~~~~~~~~~~e~~------ 221 (456)
T 4atq_A 180 TN--------FGP--------FAPEVYRMPMSYPFREE--------NPE--------ITGAEAAKRAITMIEKQ------ 221 (456)
T ss_dssp TT--------SCS--------CCSSEEEECCCCGGGCS--------STT--------CCHHHHHHHHHHHHHHH------
T ss_pred cC--------CCC--------ccccceecccccccccC--------CCc--------ccHHHHHHHHHHHHHHh------
Confidence 21 111 11345566666655321 000 01111222222333322
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||++++|||+|||+|+||++||
T Consensus 222 -~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg 299 (456)
T 4atq_A 222 -IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG 299 (456)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGT
T ss_pred -hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccC
Confidence 34679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------H----------------HHHHHHHHHHc-----CCCee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------L----------------WDLELIQQISS-----HRTVQ 733 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~----------------~~~~l~~~l~~-----~~~v~ 733 (818)
| +|+||+++++++++.+....+ + +.+++.+..++ ++.|+
T Consensus 300 g-~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~ 378 (456)
T 4atq_A 300 G-LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVG 378 (456)
T ss_dssp T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEE
T ss_pred c-CCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceE
Confidence 9 699999999999998864322 1 11222233333 46799
Q ss_pred EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 734 RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 734 ~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+|||.|+|++|+++.+. ...++...+..+.+.|+++||++.+. +++|||.||+++|++|||+++++|+++|++
T Consensus 379 ~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 379 DIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998764 33456677888999999999999864 589999999999999999999999999875
No 4
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=1.2e-62 Score=560.53 Aligned_cols=381 Identities=16% Similarity=0.163 Sum_probs=309.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeeccccccc
Q 003466 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (818)
Q Consensus 331 ~l~~l~~~l~~~~~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~ 410 (818)
.+++.+....++|.++.++++++.+++.+++..-.+....+-...|+++++++|. ||||.||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGA--ALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETT--EEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecC--EEEECCCC----EEEEccccHHh
Confidence 3455566667789999999999999998887543222111112458899999997 79999999 99999999999
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
+++||+ ||+|++|+++|+++..+.. ..++...+|+++|++.++. +++|+|+|||+||||+|||+| |.||+|
T Consensus 99 ~~lGH~-hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~tgr-- 169 (454)
T 4ao9_A 99 GVYGHS-APEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHFTGR-- 169 (454)
T ss_dssp TTTCSC-CHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHTC--
T ss_pred hcccCC-CHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-HhcccC--
Confidence 999999 9999999999999876543 4577889999999999874 799999999999999999999 888765
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
.+||+|+++|||+|.++++.++....... ...
T Consensus 170 ----------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~-------------------------~~~------- 201 (454)
T 4ao9_A 170 ----------------RKIVVFSGGYHGGVLGFGARPSPTTVPFD-------------------------FLV------- 201 (454)
T ss_dssp ----------------CEEEEETTCBCSTTCBBSSSBCTTSCCSE-------------------------EEE-------
T ss_pred ----------------CeEEEEeCCcCCccccccccccCccCCCC-------------------------ccc-------
Confidence 58999999999999887776643321110 011
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
++|||. +.+++.|++ +++++||||+||| |+++|+++|+++||++||++|
T Consensus 202 -------~p~nd~------------------~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 202 -------LPYNDA------------------QTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------ECTTCH------------------HHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------CCCchH------------------HHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 126663 567777773 4678999999998 999999999999999999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH--------------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------- 716 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------- 716 (818)
++||++||+||||| ||||++|+++++||+|||+|+||+|||| +|+||+++++++++.+.....
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla 327 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMT 327 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHH
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHH
Confidence 99999999999999 5999999999999999999999999999 699999999999998864211
Q ss_pred -------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCccc-----CCCchHHHHHHHHH
Q 003466 717 -------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-----AGYGSLYAASLLKK 766 (818)
Q Consensus 717 -------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~ 766 (818)
++.+++.+..++++.+.+|||.|+|++++|.+.... ...+......++..
T Consensus 328 ~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ 407 (454)
T 4ao9_A 328 MAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFH 407 (454)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHH
Confidence 222334444567888999999999999999765311 11234566778899
Q ss_pred HHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 767 LREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 767 l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
|+++||++.|.++ +.+++.||++|||+++++|+++|.++.+.
T Consensus 408 ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~~~a~ 449 (454)
T 4ao9_A 408 LLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGGHGAL 449 (454)
T ss_dssp HHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998774 45777899999999999999999887543
No 5
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=3e-59 Score=537.73 Aligned_cols=401 Identities=19% Similarity=0.215 Sum_probs=325.5
Q ss_pred hccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 350 ~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
+.++.+++++++||||++++.+....|+++++++|. ++||.||+ +||||+|++|++++||+ ||+|++|+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l 83 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGI--YVHTEDGR----RLIDGPAGMWCAQVGYG-RREIVDAMAHQA 83 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHH
Confidence 446777888899999999887765678999999997 69999999 99999999999999999 999999999999
Q ss_pred hhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEE
Q 003466 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (818)
Q Consensus 430 ~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~I 509 (818)
+++.+.....+.+++..+|+++|++.++.+ .++|+|++||+|||+.|||++ +.++..+|+ ++|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~------------~~~~~v 149 (476)
T 3i5t_A 84 MVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGR------------PQKKRI 149 (476)
T ss_dssp HHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HhccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEE
Confidence 998765433577999999999999998744 689999999999999999999 555445554 667899
Q ss_pred EEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhc
Q 003466 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (818)
Q Consensus 510 I~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~ 589 (818)
|+++++|||.+.+++++++.+.++..+ .++ .++..+++.|..+++ +++
T Consensus 150 i~~~~~yHg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~---------~~~------- 197 (476)
T 3i5t_A 150 IVRYDGYHGSTALTAACTGRTGNWPNF------------DIA----QDRISFLSSPNPRHA---------GNR------- 197 (476)
T ss_dssp EEETTCCCCSSHHHHHTCCCGGGCTTS------------CCC----CTTEEEECCCCGGGC---------TTS-------
T ss_pred EEEcCCcCcCChhhccccCChhhcccc------------CCC----CCCcEEeCCCccccc---------CCC-------
Confidence 999999999999999999877655431 111 134456666765531 111
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccC
Q 003466 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (818)
Q Consensus 590 ~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRt 669 (818)
+.+.+...+.+.|++.+++ .+++++++||+||+ ++++|+++++++||++|+++|++||++||+|||||||||+
T Consensus 198 --~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 198 --SQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp --CHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred --chHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 2234455556888888864 23468999999998 9999999999999999999999999999999999999999
Q ss_pred Cccchhc-ccCCCCcEEEecccccCCccccceeecchHHHhhccCCh----------H----------------HHH---
Q 003466 670 GVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS----------K----------------LWD--- 719 (818)
Q Consensus 670 G~~~a~e-~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~----------~----------------~~~--- 719 (818)
|++|+++ ++|+.||++|+||+|||||+|+|++++++++++.+.... . .+.
T Consensus 271 G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~ 350 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREG 350 (476)
T ss_dssp SSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHH
Confidence 9999999 999999999999999999899999999999999876420 0 000
Q ss_pred ---------HHHHHHH---HcCCCeeEEEeeeeEEEEEEecCcccCC-Cc--hHHHHHHHHHHHhCCceEeecCCEEEEE
Q 003466 720 ---------LELIQQI---SSHRTVQRVVALGTLCAIELQAAGCNAG-YG--SLYAASLLKKLREDGVYMRPLGNVIYLM 784 (818)
Q Consensus 720 ---------~~l~~~l---~~~~~v~~vrg~Gl~~~iel~~~~~~~~-~~--~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ 784 (818)
+.+.+.+ ..++.+..+++.|+++++++..+..... +. ...+..+++.|+++||++++.|+.+|++
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~ 430 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVIS 430 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecCCEEEEE
Confidence 1122333 3467789999999999999976521111 11 1246778999999999999988999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 785 CGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 785 ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
||+++|+++|++++++|+++++++.+
T Consensus 431 p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 431 PPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 6
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.9e-59 Score=538.98 Aligned_cols=396 Identities=18% Similarity=0.266 Sum_probs=321.4
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++.+++||||+++..+....|+++++++|. ++||.||| +||||+||+|++++||+ ||+|++|+++|++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~l~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 16 QALDAAHHLHPFSANNALGEEGTRVITRARGV--WLNDSEGE----EILDAMAGLWCVNIGYG-RDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHEECTTEEHHHHHHHCCEEEEEEEBT--EEEETTCC----EEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCS
T ss_pred HHHHHhhccCCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhcc
Confidence 45566789999998765433468899999997 69999999 99999999999999999 9999999999999987
Q ss_pred c-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 434 H-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 434 ~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
+ .++..+.+++..+|+++|+++.|.+ .++|+|+|||+|||+.|+|++ +.|++.+|. +++.+||++
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~------------~~~~~ii~~ 154 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQ------------PEKTVIISR 154 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 3 3344567899999999999998644 579999999999999999999 777766654 667899999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+.+++++++.+.++..| . + .++..+++.|.+|+ +|+. .+
T Consensus 155 ~~~yHg~t~~~~~~~~~~~~~~~~------------~-~----~~~~~~v~~p~~~~----------~~~~-------~~ 200 (472)
T 3hmu_A 155 KNAYHGSTVASSALGGMAGMHAQS------------G-L----IPDVHHINQPNWWA----------EGGD-------MD 200 (472)
T ss_dssp TTCCCCSSHHHHHHSCCHHHHHTT------------C-C----CSSEEEECCCCHHH----------HCTT-------CC
T ss_pred cCcCCCccHHhhhccCChhhcccc------------C-C----CCCcEEeCCCcccc----------CCcc-------cC
Confidence 999999999999999876554431 1 0 12445677776654 2220 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.+.+...+.+.|++.|.+ .+++++++||+||+ +++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 201 ~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 275 (472)
T 3hmu_A 201 PEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW 275 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc
Confidence 234445556888888864 23468999999998 9999999999999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC------hH---------------HH---------H---
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD------SK---------------LW---------D--- 719 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~------~~---------------~~---------~--- 719 (818)
|+++++|+.||++||||+|||||+|+|++++++++++.+... .. .+ .
T Consensus 276 ~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~ 355 (472)
T 3hmu_A 276 FGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVA 355 (472)
T ss_dssp CHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTH
T ss_pred chhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999989999999999999887311 00 00 0
Q ss_pred -HHHHHH---HHcCCCeeEEEeeeeEEEEEEecCcccCCC---c-hHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 720 -LELIQQ---ISSHRTVQRVVALGTLCAIELQAAGCNAGY---G-SLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 720 -~~l~~~---l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~---~-~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
+.+.+. +..++.+.++|+.|+++++++..+.....+ . ...+..+++.|+++||++++.|+.+||+||+++|+
T Consensus 356 ~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~~~~t~ 435 (472)
T 3hmu_A 356 APYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITP 435 (472)
T ss_dssp HHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCH
Confidence 112222 334678999999999999999754221111 1 34577889999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~ 809 (818)
+||++++++|+++++++.
T Consensus 436 e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 436 AEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998875
No 7
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=9.1e-56 Score=505.51 Aligned_cols=400 Identities=17% Similarity=0.239 Sum_probs=305.5
Q ss_pred cchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
++.+++.+++||||+++..+....|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGV--YLWDSEGN----KIIDGMAGLWCVNVGYG-RKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecC--EEEECCCC----EEEECCCchhcccCCCC-CHHHHHHHHHHHHh
Confidence 4667788999999999887655678899999997 69999999 99999999999999999 99999999999998
Q ss_pred cc-cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEE
Q 003466 432 FG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (818)
Q Consensus 432 ~~-~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II 510 (818)
+. +.....+.++...+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.+++.+|. +++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGK------------PEKKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEEE
Confidence 76 33334567899999999999988644 589999999999999999999 666665554 5678999
Q ss_pred EEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcc
Q 003466 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (818)
Q Consensus 511 ~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~ 590 (818)
+++++|||.+.+++++++...++..| .+ ...+..+++.|.+|++ ++.
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~p~~~~~----------~~~------- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQG------------DL----PIPGMAHIEQPWWYKH----------GKD------- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC---------------CC----SCSSEEEECCCCHHHH----------CTT-------
T ss_pred EECCCcCCccHHHHhhcCChhhcccc------------CC----CCCCCEEeCCCccccC----------Ccc-------
Confidence 99999999999999999877655431 01 0124456777766642 210
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC
Q 003466 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (818)
Q Consensus 591 ~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG 670 (818)
.+.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|++++|++|+++|+++|++||++||+|||||||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12234444556788888864 23468999999997 99999999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc---CChH-------------------H---------HH
Q 003466 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---GDSK-------------------L---------WD 719 (818)
Q Consensus 671 ~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---~~~~-------------------~---------~~ 719 (818)
++|+++++++.||++||||+||||++|+|++++++++++.+. .... . ..
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 349 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVK 349 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999899999999999998775 2111 0 01
Q ss_pred --------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC---CCchHHHHHHHHHHHhCCceEeecCCEEEEECCCC
Q 003466 720 --------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNA---GYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPC 788 (818)
Q Consensus 720 --------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~---~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~ 788 (818)
+.+.+.+..++.+..+++.|+++++++..+.... .+....+..+++.|+++||++++.|+.+|++||++
T Consensus 350 ~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~~~~~ 429 (459)
T 4a6r_A 350 DDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLV 429 (459)
T ss_dssp HTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCCCEEEEECCCC
Confidence 1111344567889999999999999997543211 12334577889999999999999889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~l~~ 810 (818)
+|++|+++++++|+++++++.+
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 8
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=6.6e-56 Score=506.80 Aligned_cols=400 Identities=19% Similarity=0.260 Sum_probs=321.5
Q ss_pred cchhhhcCccccccCCCCCCCCC--CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhh
Q 003466 352 DMPKRAGELFWWPFTQHKLVPEE--AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (818)
Q Consensus 352 ~l~~~~~~~~~~p~t~~~~~~~~--~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~ 429 (818)
++.+.+.+++||||++++.+... .|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGV--TVWDNNGR----KSIDAFAGLYCVNVGYG-RQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeecc--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHH
Confidence 45667778999999987543212 34889999997 69999999 99999999999999999 999999999999
Q ss_pred hhccc-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 430 ARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 430 ~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
+++.+ .....+.++...+|+++|+++++.+ .++|+|++||+|||+.|+|++ +.+++.+|+ +++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~------------~~~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGR------------PEKKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 98763 3334567889999999999987643 579999999999999999999 667666554 56789
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+++++|||.+.+++++++...++..| .+. ..+..+++.|.+|+ +||.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~----------~~~~----- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNAF------------DLP----RAPVLHTEAPYYFR----------RTDR----- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTTT------------TCS----CTTEEEECCCCGGG----------CSCT-----
T ss_pred EEEECCCcCCCCHHHhhccCCccccccc------------CCC----CCCCEEeCCCcccc----------CCcc-----
Confidence 9999999999999999999876655431 111 12445677776664 2321
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
..+.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||+|||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 011233444556788888864 23468999999998 999999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC----------ChH----------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----------DSK---------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~----------~~~---------------------- 716 (818)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.. ...
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998899999999999988731 100
Q ss_pred ----------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-C--CchHHHHHHHHHHHhCCceEeecC--CEE
Q 003466 717 ----------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-G--YGSLYAASLLKKLREDGVYMRPLG--NVI 781 (818)
Q Consensus 717 ----------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~--~~~~~a~~~~~~l~e~Gvlv~p~g--~~i 781 (818)
.+.+.+.+.+.+++.+..+++.|+++++++..+.... . +....+..+++.|+++||++++.+ +.+
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~i 429 (460)
T 3gju_A 350 LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDIL 429 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEE
Confidence 1112233445667889999999999999997553211 1 122356788999999999999976 999
Q ss_pred EEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
||+||+++|++||++++++|+++++++.
T Consensus 430 Ri~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 430 GFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 9
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.8e-54 Score=495.48 Aligned_cols=379 Identities=27% Similarity=0.392 Sum_probs=301.5
Q ss_pred hhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeC-CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhh
Q 003466 354 PKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~-dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~ 431 (818)
.+++.+++||||+++ +. ...|+++++++|. ++||. ||| ..+||||+||||++++||+ ||+|++|+++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~--~l~d~~dG~--~~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 34 IAVDGAHLWHPYSSIGRE--AVSPVVAVAAHGA--WLTLIRDGQ--PIEVLDAMSSWWTAIHGHG-HPALDQALTTQLRV 106 (457)
T ss_dssp HHHHHHHBCCTTCCSSCC--SSCCEEEEEEEBT--EEEEEETTE--EEEEEETTHHHHTCTTCBT-CHHHHHHHHHHHHH
T ss_pred HHHHHhhcCccccccccc--CCCCceEEeeecC--EEEEccCCC--eeEEEECCCcHhhhccCCC-CHHHHHHHHHHHHh
Confidence 455667899999987 33 3578899999997 69999 985 1279999999999999999 99999999999999
Q ss_pred cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+.+.++..+.+++..+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.|+..+|. +++.+||+
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~------------~g~~~ii~ 172 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGL------------PGKRRLMT 172 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEE
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCceEEE
Confidence 8876655567899999999999998643 579999999999999999999 555444443 56779999
Q ss_pred EcCCCCCCccccccccC-CCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcc
Q 003466 512 LKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg-~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~ 590 (818)
++++|||.+.+++++++ ...++.. +.+ ...+..+++.|... ..++|
T Consensus 173 ~~~~yhg~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~p~~~---------~~~~d-------- 219 (457)
T 3tfu_A 173 WRGGYHGDTFLAMSICDPHGGMHSL-----WTD-----------VLAAQVFAPQVPRD---------YDPAY-------- 219 (457)
T ss_dssp ETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS---------CCHHH--------
T ss_pred EcCCcCCccHHhhcccCCccccccc-----ccC-----------CCCCceEecCCCcc---------cCHHH--------
Confidence 99999999999999965 3333321 000 01122333443211 00111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC
Q 003466 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (818)
Q Consensus 591 ~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG 670 (818)
.+.|++.|++ +++++++||+||++|+.+|+++++++|+++|+++|++||++||+|||+|||||+|
T Consensus 220 ----------~~~le~~l~~-----~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G 284 (457)
T 3tfu_A 220 ----------SAAFEAQLAQ-----HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG 284 (457)
T ss_dssp ----------HHHHHHHHHH-----HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ----------HHHHHHHHHh-----CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcccc
Confidence 3677777763 3468999999993399999999999999999999999999999999999999999
Q ss_pred ccchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc---CC-----hH----------------HH--------
Q 003466 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---GD-----SK----------------LW-------- 718 (818)
Q Consensus 671 ~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---~~-----~~----------------~~-------- 718 (818)
++|+++++|+.||++||||+|||||+|+|++++++++++.+. .. .. .+
T Consensus 285 ~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~ 364 (457)
T 3tfu_A 285 ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTR 364 (457)
T ss_dssp SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999889999999999998873 11 10 00
Q ss_pred ----HHHHHHHHH---cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChH
Q 003466 719 ----DLELIQQIS---SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSP 791 (818)
Q Consensus 719 ----~~~l~~~l~---~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~ 791 (818)
.+.+.+.++ .++.+..+|+.|+++++++.... .+..+++.|+++||++++.++.+|++||+++|+
T Consensus 365 ~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 365 ITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAMPPYICTP 436 (457)
T ss_dssp HHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCC--------CHHHHHHHHHHTTEECCCBTTEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcc--------cHHHHHHHHHHCCeEEEecCCEEEEECCCCCCH
Confidence 112233333 46778899999999999996541 256789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003466 792 EVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 792 edId~~~~~l~~~l~~l~ 809 (818)
+||++++++|+++++++.
T Consensus 437 eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 437 AEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999987653
No 10
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=3.6e-54 Score=490.54 Aligned_cols=395 Identities=27% Similarity=0.369 Sum_probs=295.7
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.+.+.+++||||++++.+ ...|+++++++|. ++||.||+ +|||+++++|++++||+ ||+|++|+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~ 76 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDY-DENPLIIESGTGI--KVKDINGK----EYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKI 76 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHH-HHSCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccccccccc-cCCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhc
Confidence 4566778999999987654 2457889999997 69999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+.....+.++...+|+++|++.++.+ .++|+|++||+|||+.|+|++ +.++...|. +++.+||++
T Consensus 77 ~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~------------~~~~~vi~~ 142 (448)
T 3dod_A 77 AHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGK------------PEKQKFIAM 142 (448)
T ss_dssp SCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCC------------CCCCEEEEE
Confidence 765444567889999999999988643 589999999999999999999 555322332 446799999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+.+++++++...++..+ .| ...+..+++.|++|+++ + .+
T Consensus 143 ~~~yhg~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~----------~--------~~ 188 (448)
T 3dod_A 143 KNGYHGDTIGAVSVGSIELFHHVY-GP---------------LMFESYKAPIPYVYRSE----------S--------GD 188 (448)
T ss_dssp C---------------------------------------------CEEECCCCCTTSS----------S--------CC
T ss_pred CCCCCCccHHHHHhcCCccccccc-cC---------------CCCCceEeCCCccccCC----------c--------cc
Confidence 999999999999999866554431 01 01233456666655421 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~-g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~ 671 (818)
...+.....+.|++.|+ .+++++++||+||+ + +++|+++++++|+++|+++|++||++||+|||+|||||+|+
T Consensus 189 ~~~~~~~d~~~le~~l~-----~~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~ 262 (448)
T 3dod_A 189 PDECRDQCLRELAQLLE-----EHHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK 262 (448)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhhhHHHHHHHHHHHH-----hCCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Confidence 11222333577888886 23568999999998 7 99999999999999999999999999999999999999999
Q ss_pred cchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC-------ChH----------------------------
Q 003466 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG-------DSK---------------------------- 716 (818)
Q Consensus 672 ~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~-------~~~---------------------------- 716 (818)
+|+++++|+.||++||||++++||+|+|++++++++++.+.. ...
T Consensus 263 ~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 342 (448)
T 3dod_A 263 MFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVE 342 (448)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999999997899999999999998764 100
Q ss_pred -------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCchH--HHHHHHHHHHhCCceEeecCCEEEEECC
Q 003466 717 -------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGSL--YAASLLKKLREDGVYMRPLGNVIYLMCG 786 (818)
Q Consensus 717 -------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~--~a~~~~~~l~e~Gvlv~p~g~~ir~~pp 786 (818)
.+.+.+.+ +..++.+..+++.|+++++++..+.... ..... .+..+++.|+++||++.|.++.+|++||
T Consensus 343 ~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~iRi~~~ 421 (448)
T 3dod_A 343 QVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421 (448)
T ss_dssp HHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEEEECCC
T ss_pred HHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEEEEECC
Confidence 01111222 4467788999999999999997642111 11111 2567899999999999998999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 003466 787 PCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 787 l~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+.+|+++|++++++|+++++++..
T Consensus 422 ~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 422 LASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987653
No 11
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=3.2e-52 Score=474.42 Aligned_cols=389 Identities=23% Similarity=0.307 Sum_probs=307.8
Q ss_pred cchhhhcCcccc---ccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHh
Q 003466 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (818)
Q Consensus 352 ~l~~~~~~~~~~---p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q 428 (818)
++.+++.+++|+ ||++ ..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAKAEGC--WVEDIQGK----RYLDGMSGLWCVNSGYG-RKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHH
Confidence 355677788998 4432 467899999997 69999999 99999999999999999 99999999999
Q ss_pred hhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceE
Q 003466 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (818)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (818)
++++.+ ....+.++...+|+++|++.++.+ .+ |+|++||+|||+.|+|++ +.|+...|+ +++.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGE------------PHRYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTC------------TTCCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 999877 334567899999999999998754 35 999999999999999999 555333332 35679
Q ss_pred EEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhh
Q 003466 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (818)
Q Consensus 509 II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~ 588 (818)
||+++++|||.+.+++++++...++..+ .|. .++..+++.|++++. +|||..
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~--------~~~~~~---- 193 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQY-EPF---------------ASGFLHVTPPDCYRM--------PGIERE---- 193 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTTT-CCC---------------CSCEEEECCCCTTTS--------TTTTTS----
T ss_pred EEEECCCcCCCCHHHHhcCCchhhcccc-CCC---------------CCCCeEeCCCccccC--------ccCCch----
Confidence 9999999999999999999876554431 111 123455666666643 244421
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCccc
Q 003466 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (818)
Q Consensus 589 ~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR 668 (818)
+.+...+.+.|++.+++ .+++++++||+||++++ +|+++++++|+++|+++|++||++||+|||||||||
T Consensus 194 -----~~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 194 -----NIYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp -----CGGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----hhHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 12222345778888863 23568999999997578 999999999999999999999999999999999999
Q ss_pred CCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC----C-----h-H----------------------
Q 003466 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG----D-----S-K---------------------- 716 (818)
Q Consensus 669 tG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~----~-----~-~---------------------- 716 (818)
+|++|+++++++.||++||||++++||+|+|++++++++++.+.. . . .
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 343 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENL 343 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999998999999999999998843 1 0 0
Q ss_pred ---------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccC-CCchHHHHHHHHHHHhCCceEeecC-------C
Q 003466 717 ---------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYGSLYAASLLKKLREDGVYMRPLG-------N 779 (818)
Q Consensus 717 ---------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~-~~~~~~a~~~~~~l~e~Gvlv~p~g-------~ 779 (818)
.+.+.+.+.+..++.+..+++.|+++++++..+.... .++...+..+++.|+++||++.+.+ +
T Consensus 344 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~ 423 (452)
T 3n5m_A 344 IERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNN 423 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCC
Confidence 0111222233567888999999999999996542111 1223456678999999999999864 8
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+||.||+++|++||++++++|++++++
T Consensus 424 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 424 ILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=1.1e-51 Score=471.27 Aligned_cols=369 Identities=21% Similarity=0.229 Sum_probs=293.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 43 ~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 115 (451)
T 3oks_A 43 MPVYAVRAGGG--IVEDVDGN----RLIDLGSGIAVTTVGNS-APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNR 115 (451)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEEcCCCccccccCCC-CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHH
Confidence 46688999997 69999999 99999999999999999 9999999999999987765555778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.++....++|+|++||+|||+.|+|++ +.+++ +.+||+++++|||.+.+++++++.. .++
T Consensus 116 ~~~~~~~~~v~~~~sGseA~~~Alk~a-~~~~g------------------~~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 176 (451)
T 3oks_A 116 LTPVRGDKRSALFNSGSEAVENAVKIA-RSHTH------------------KPAVVAFDHAYHGRTNLTMALTAKVMPYK 176 (451)
T ss_dssp HSSCCSSEEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCcCCCCEEEEeCcHHHHHHHHHHHH-HHhcC------------------CCeEEEEcCCcCCccHHHHHhcCCCcccc
Confidence 887433479999999999999999999 66654 3589999999999999999999863 343
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. +. + ..++..++++|++++.+. . ..+.+.+.....+.+++.|++.
T Consensus 177 ~~-----~~---~--------~~~~~~~~~~~~~~~~~~--------~--------g~~~~~~~~~~~~~~~~~l~~~-- 222 (451)
T 3oks_A 177 DG-----FG---P--------FAPEIYRAPLSYPFRDAE--------F--------GKELATDGELAAKRAITVIDKQ-- 222 (451)
T ss_dssp TT-----CC---S--------CCSSEEEECCCCHHHHGG--------G--------CTTTTTCHHHHHHHHHHHHHHH--
T ss_pred cC-----CC---C--------CCCCcEEeCCCccccccc--------c--------ccccchhhHHHHHHHHHHHHhh--
Confidence 32 10 0 113445666676553210 0 0011111222334455555421
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
..++++++||+||+ +++||+++++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++||||++++
T Consensus 223 -~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~ 300 (451)
T 3oks_A 223 -IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAG 300 (451)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred -cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhC
Confidence 23568999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 301 G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 379 (451)
T 3oks_A 301 G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR 379 (451)
T ss_dssp T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred C-cceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 9 799999999999987753211 1111223334567889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|+++++++.... ...++...+..+++.|+++||++.+.+ +.+|++||+++|+++|++++++|++++++
T Consensus 380 G~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 380 GAMIAMELVKAG-TTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp TTEEEEEEBSTT-SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEecCc-cCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999997521 122344567789999999999999854 89999999999999999999999998753
No 13
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2e-51 Score=469.50 Aligned_cols=366 Identities=24% Similarity=0.264 Sum_probs=291.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|++++.+..+..+.++...+|+++|++
T Consensus 46 ~p~~~~~~~G~--~v~d~~G~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 118 (453)
T 4ffc_A 46 APVYAVDADGG--VIVDADGN----SFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNA 118 (453)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEeCCCC----EEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHH
Confidence 46688999997 69999999 99999999999999999 9999999999999987765555778999999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
.++....++|+|+|||+|||+.|||++ +.+++ +.+||+++++|||.+.+++++++.. .++
T Consensus 119 ~~~~~~~~~v~~~~sGseA~~~alk~a-~~~~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 179 (453)
T 4ffc_A 119 LTPGDHDKRTALFNSGAEAVENAIKVA-RLATG------------------RPAVVAFDNAYHGRTNLTMALTAKSMPYK 179 (453)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCcHHHHHHHHHHHH-HHhcC------------------CCEEEEEcCccCCcchHHHhhcCCCcccc
Confidence 887432479999999999999999999 66654 3589999999999999999999754 333
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. +.+ ...+..++++|.+++ |. +. .+..+....+.+.|++.+
T Consensus 180 ~~-----~~~-----------~~~~~~~~~~~~~~~------------~~---~g--~~~~~~~~~~~~~l~~~i----- 221 (453)
T 4ffc_A 180 SQ-----FGP-----------FAPEVYRMPASYPLR------------DE---PG--LTGEEAARRAISRIETQI----- 221 (453)
T ss_dssp TT-----SCS-----------CCSSEEEECCCCTTT------------SC---TT--CCHHHHHHHHHHHHHHHT-----
T ss_pred cC-----CCC-----------CCCCcEEeCCCcccc------------Cc---cc--cchHHHHHHHHHHHHHhc-----
Confidence 32 110 012344556664442 21 00 011111222234455444
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++++||+||+ +++||+++++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++||||++++
T Consensus 222 --~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~ 298 (453)
T 4ffc_A 222 --GAQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG 298 (453)
T ss_dssp --CGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
| +|+|++++++++++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 299 G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 377 (453)
T 4ffc_A 299 G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGR 377 (453)
T ss_dssp T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Confidence 9 799999999999987753211 1111223334567889999999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
|+++++++.... ...++...+..+++.|+++||++.+.+ +.+|++||+++|++||++++++|+++++++.
T Consensus 378 g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 378 GAMLAIEIVKPG-TLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp TTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCc-ccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997521 222344567889999999999999854 8999999999999999999999999997753
No 14
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=2.6e-47 Score=430.58 Aligned_cols=377 Identities=22% Similarity=0.232 Sum_probs=275.4
Q ss_pred CccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCC
Q 003466 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (818)
Q Consensus 359 ~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~ 438 (818)
+++||||. ..|.++++++|. ++||.+|+ +|||+++++|++++||+ ||+|++|+.+|++++.+....
T Consensus 2 ~~~~~~~~-------~~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSS-------KPYPVAVRGEGV--FLYDDAGR----RYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSS-------SCCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCC-------CCCceEEeeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhccccccc
Confidence 57899982 346788999997 69999999 99999999999999999 999999999999988765544
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|++..+.+ .++|+|++||+||++.|++++ +.+....|+ +++.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~-~~~~~~~g~------------~~~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLA-RQYHVERGE------------PGRFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEeCCcCC
Confidence 567889999999999988644 579999999999999999999 444334443 456799999999999
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.+.+++++++...++..+ .+. . + ..+..+++.|+.+++ ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~--------~-~----~~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARRELY-TPL--------M-R----PEAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp --------------------------------C----GGGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCcccccccc-CCc--------C-C----CCCceEcCCCcccch--------------------------hh
Confidence 999999888765443320 000 0 0 002233444433210 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g-~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~ 677 (818)
...+.|++.|++ .+++++++|++||+ ++ ++|+++++++|+++|+++|++||++||+|||++||||+|+++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 123567777763 22368999999998 89 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCCcEEEecccccCCccccceeecchHHHhhccCC-------h-H-------------------------------H
Q 003466 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------S-K-------------------------------L 717 (818)
Q Consensus 678 ~-gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-------~-~-------------------------------~ 717 (818)
+ ++.||++||||++++||+|+|++++++++++.+... . . .
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9 999999999999999989999999999998876521 1 0 0
Q ss_pred HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCc-hHHHHHHHHHHHhCCceEeec--------CCEEEEECCCC
Q 003466 718 WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYG-SLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPC 788 (818)
Q Consensus 718 ~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~-~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~ 788 (818)
+.+.+.+.+..++.+..+++.|.++.+++.+.......+ ...+..+++.|+++||++++. ++.+|++|+++
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~ 408 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLS 408 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTT
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCC
Confidence 111222333467888999999999999996321111100 122567899999999999986 58899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 003466 789 SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 789 ~t~edId~~~~~l~~~l~~l 808 (818)
+|++++++++++|+++++++
T Consensus 409 ~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 409 ITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 15
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=5.4e-46 Score=421.98 Aligned_cols=346 Identities=21% Similarity=0.298 Sum_probs=262.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+|+++..+||+ ||+|++|+.+|++++.+.+. .+.++...+|+++|++
T Consensus 47 ~~~~~~~~~g~--~~~d~~G~----~ylD~~~g~~~~~lgh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 118 (433)
T 1z7d_A 47 IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTN 118 (433)
T ss_dssp EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEcccchhhcccCCC-CHHHHHHHHHHHHhCCCccC-CcCCHHHHHHHHHHHh
Confidence 47788999887 79999999 99999999999999999 99999999999998765432 3567889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++ .++|+|++||+||++.|++++ +.|+ ..+|. .++|.+||+++++|||.+.+++++++.+.++
T Consensus 119 ~~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~-----------~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 119 LLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKI-----------PENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCC-----------CTTCCEEEEETTC------------------
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 986 479999999999999999998 5442 11111 0345789999999999999988888754333
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ ++.. .+... ++++|+ +.+++.++
T Consensus 184 ~~~--------~p~~--------~~v~~----------------~~~~d~------------------~~le~~l~---- 209 (433)
T 1z7d_A 184 SNF--------GPFA--------PQFSK----------------VPYDDL------------------EALEEELK---- 209 (433)
T ss_dssp ------------------------CEEE----------------ECTTCH------------------HHHHHHHT----
T ss_pred ccC--------CCCC--------CCeEE----------------eCCCCH------------------HHHHHHhC----
Confidence 210 0000 01111 113442 56777774
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++||+||+ ++++|+++++++|+++|+++|++||++||+||||+||||+|++++++++|+.||++|+||++||
T Consensus 210 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~ 285 (433)
T 1z7d_A 210 ---DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 285 (433)
T ss_dssp ---STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHH----cCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~----~~~~v~~vrg~ 738 (818)
||+|+|++++++++++.+..... .+ .+.+.+.++ .++.+..+++.
T Consensus 286 G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~ 365 (433)
T 1z7d_A 286 GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGK 365 (433)
T ss_dssp TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 98899999999999987754211 00 011222332 45777889999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+++.... ..+..+++.|+++||++.+. ++.+|+.||+.+|++||++++++|+++++++
T Consensus 366 g~~~~i~~~~~~-------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 366 GLLCAIEFKNEL-------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TTEEEEEECTTT-------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEccCh-------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999986431 12557889999999999986 5899999999999999999999999998765
No 16
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=3.5e-50 Score=460.29 Aligned_cols=378 Identities=17% Similarity=0.150 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeCCcCccccceeeccccccc
Q 003466 332 FDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (818)
Q Consensus 332 l~~l~~~l~~~~~~r~~~~~~l~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~ 410 (818)
+..+++...++|.++..+++++.++..+++....... ..+ ...|+++++++|. ++||.||| +||||++++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~-~~~p~~~~~~~G~--~l~D~dG~----~yiD~~~~~~~ 111 (465)
T 2yky_A 39 KAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFH-RPFPLVIAQGTGS--RFQDVDGH----AYVNFLGEYTA 111 (465)
Confidence 4444555566777788888888888877764311111 111 1247888898886 79999999 99999999999
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
.++||+ ||+|++|+++|+++... .++.++...+|+++|++++| + .++|+|+|||+|||++|+|+| |.+++
T Consensus 112 ~~lGh~-~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~tg--- 181 (465)
T 2yky_A 112 GLFGHS-HPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAITG--- 181 (465)
Confidence 999999 99999999999998422 24578899999999999986 3 589999999999999999999 76654
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
|.+||+++++|||++.+++ ++ +. .. + + |. ..+.
T Consensus 182 ---------------r~~ii~~~~~yHG~~~~~~--sg-~~-~~----------g--~--~~-------~~~~------- 214 (465)
T 2yky_A 182 ---------------RKTVLAFDGGYHGGLLNFA--SG-HA-PT----------N--A--PY-------HVVL------- 214 (465)
Confidence 3589999999999998888 43 10 00 0 0 00 0011
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
++|||+ +.|++.+++ .++++++||+||+ ++++|+++++++|+++|+++|
T Consensus 215 -------~~~~d~------------------~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l~ 263 (465)
T 2yky_A 215 -------GVYNDV------------------EGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAEA 263 (465)
Confidence 125553 556666652 3468999999998 899999999999999999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC---Ch--H---------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG---DS--K--------- 716 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~---~~--~--------- 716 (818)
++||++||+|||+| | |+|++|+++++|+.||++||||++||| +|+|++++++++++.+.. +. .
T Consensus 264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npl 340 (465)
T 2yky_A 264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNIL 340 (465)
Confidence 99999999999999 6 999999999999999999999999999 799999999999998765 11 1
Q ss_pred ----------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc-----cCCCchHHHHHHHH
Q 003466 717 ----------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGC-----NAGYGSLYAASLLK 765 (818)
Q Consensus 717 ----------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~-----~~~~~~~~a~~~~~ 765 (818)
.+ .+++.+.+++++.+.++++.|+|+++++.++.. ...++...+..+++
T Consensus 341 a~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 420 (465)
T 2yky_A 341 TMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFF 420 (465)
Confidence 11 111222223456667899999999999975210 00112234667899
Q ss_pred HHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 766 KLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 766 ~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.|+++||++.|.+... ||+++|++|||+++++|+++++++.+
T Consensus 421 ~ll~~GV~v~p~~~~~---~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 421 HMLRKGIYLAPRGMYA---LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 9999999999865322 88999999999999999999987753
No 17
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=2.3e-46 Score=425.46 Aligned_cols=394 Identities=19% Similarity=0.269 Sum_probs=300.6
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
..+.+++++|+||++++.+. ..|+++.+++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVAAEGS--WLVDDKGR----KVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhC
Confidence 44567788999999875432 257788898887 79999999 99999999999999999 999999999999886
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
....+..+.++...+|+++|+++++.+ .++|+|++||+||++.|++++ +.|+..+|+ +++.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~------------~~~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQ------------ATKTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 522222567888999999999998643 579999999999999999998 666654443 456789999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+.+|||.+..++++++.+.++..| ++. ..+..+++.|..+... |+.+ |
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~~~--------~~~--------~~~~~~v~~~~~~~~~--------~~~~--------d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRKLF--------GQP--------MQDVDHLPHTLLASNA--------YSRG--------M 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHTTT--------CCC--------SCSEEEECCCCCGGGT--------TCSS--------S
T ss_pred CCCcCCCChhhhhccCChhhcccc--------CCC--------CCCCeEecCCccccCc--------cccC--------C
Confidence 999999999888888754333220 000 0123344555433210 0000 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
.+.....+.+.|++.|++ .+++++++|++||+ ++.+|+++++++|+++|+++|++||++||+|||||||||+|++
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 111222335778888863 12257999999998 8889999999999999999999999999999999999999998
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC-----------h-H----------------HH------
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-----------S-K----------------LW------ 718 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~-----------~-~----------------~~------ 718 (818)
++++++++.||++++||++++||+|+|++++++++++.+... . . .+
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 888999999999999999999988999999999998876431 0 0 00
Q ss_pred ------HHHHHHHHHc---CCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCC
Q 003466 719 ------DLELIQQISS---HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCS 789 (818)
Q Consensus 719 ------~~~l~~~l~~---~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~ 789 (818)
.+.+.+.+++ ++.+..+++.|.++.+++....... ......+.+.|+++||++++.++.+|+.||+.+
T Consensus 352 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~~~g~~iRis~~~~~ 428 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA---IVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNS 428 (449)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS---SHHHHHHHHHHHHHTEECEEETTEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc---cccHHHHHHHHHHCCcEEecCCCEEEEECCCcC
Confidence 0122334443 5667788999999999996531000 002335888899999999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003466 790 SPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 790 t~edId~~~~~l~~~l~~l 808 (818)
|++|+++++++|+++++++
T Consensus 429 t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 429 KPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 18
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=1.5e-45 Score=419.26 Aligned_cols=346 Identities=19% Similarity=0.265 Sum_probs=274.6
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+|+|+.++||+ ||+|++|+.+|++++.+.+. .+.++...+|+++|++
T Consensus 58 ~~~~~~~~~G~--~~~d~~g~----~ylD~~sg~~~~~lgh~-~p~v~~Ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 129 (439)
T 2oat_A 58 LPVALERGKGI--YLWDVEGR----KYFDFLSSYSAVNQGHC-HPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITK 129 (439)
T ss_dssp CSCEEEEEEBT--EEEETTCC----EEEESSGGGGTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEESSHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEccCCcccccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHH
Confidence 35678898887 79999999 99999999999999999 99999999999998765432 3457789999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh-cccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+++ .++++|++||+||++.|++++ +.|+. .+|. .++|.+||+++++|||.+.+++++++.+.++
T Consensus 130 ~~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~-----------~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 130 LFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGI-----------QKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCC-----------CTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred hcC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 886 479999999999999999999 54431 1111 0345689999999999999988887643322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .++.. .+... ++|+|+ +.+++.|+
T Consensus 195 ~~--------~~p~~--------~~v~~----------------~~~~d~------------------~~le~~l~---- 220 (439)
T 2oat_A 195 DG--------FGPFM--------PGFDI----------------IPYNDL------------------PALERALQ---- 220 (439)
T ss_dssp TT--------SCSCC--------TTEEE----------------ECSSCH------------------HHHHHHTT----
T ss_pred cC--------CCCCC--------CCeEE----------------eCCCCH------------------HHHHHHhC----
Confidence 21 00000 01111 114442 56777774
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.+++++|++||+ ++.+|+++++++++++|+++|++||++||+||||+||||+|++++++++|+.||++++||++||
T Consensus 221 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~ 296 (439)
T 2oat_A 221 ---DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 296 (439)
T ss_dssp ---STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccC
Confidence 247899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHc--CCCeeEEEeeee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISS--HRTVQRVVALGT 740 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~--~~~v~~vrg~Gl 740 (818)
||+|+|++++++++++.+..... .+ .+.+.+.+++ ++.+..+++.|+
T Consensus 297 G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~ 376 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGL 376 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETT
T ss_pred CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeee
Confidence 98899999999999987754211 01 1123344443 456678999999
Q ss_pred EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 741 LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 741 ~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.+++.... . ..+..+++.|+++||++.+. ++.+|+.||+.+|++||++++++|++++++
T Consensus 377 ~~~v~l~~~~---~---~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 377 LNAIVIKETK---D---WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEEEEECCCS---S---CCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCc---c---HHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 9999986431 0 12457889999999999986 489999999999999999999999998754
No 19
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.6e-45 Score=414.76 Aligned_cols=352 Identities=17% Similarity=0.256 Sum_probs=271.5
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +|||+++++|++++||+ ||+|++|+++|+++... .++.++...+|+++|+
T Consensus 36 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la 105 (434)
T 3l44_A 36 GAPIAMERGKGA--YFWDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITTAAENGVL---YGTPTALEVKFAKMLK 105 (434)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEECCGGGTTCSSCBT-CHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHH
Confidence 357789999987 69999999 99999999999999999 99999999999988532 2456889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+||++.|+|++ +.+++ +.+||+++++|||.+..++++++.....
T Consensus 106 ~~~~~--~~~v~~~~sGsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 164 (434)
T 3l44_A 106 EAMPA--LDKVRFVNSGTEAVMTTIRVA-RAYTG------------------RTKIMKFAGCYHGHSDLVLVAAGSGPST 164 (434)
T ss_dssp HHCTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSGGGGBC-------
T ss_pred HhCCC--CCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCcHHHHhhcCCcccc
Confidence 98863 589999999999999999999 55543 3589999999999999999888754322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ +|...... ...++|||+ +.|++.+++
T Consensus 165 ~~--~~~~~~--------------------~~~~~~~~---~~~~~~~d~------------------~~le~~l~~--- 198 (434)
T 3l44_A 165 LG--TPDSAG--------------------VPQSIAQE---VITVPFNNV------------------ETLKEALDK--- 198 (434)
T ss_dssp CC--CBSSTT--------------------CCHHHHTT---EEEECTTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC--------------------CCCcCCCc---eEecCcccH------------------HHHHHHHHh---
Confidence 11 011000 00000000 001224442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++||+||+ ++.+|+++++++|+++|+++|++||++||+|||++|| |+|++++++++++.||++|+||++|+
T Consensus 199 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 274 (434)
T 3l44_A 199 --WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGG 274 (434)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcC
Confidence 3468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-------H-------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-------K-------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-------~-------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 275 G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 353 (434)
T 3l44_A 275 G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL 353 (434)
T ss_dssp T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9 79999999999998775410 0 0111122223346777889
Q ss_pred EeeeeEEEEEEecCcccC-----CCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNA-----GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~-----~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
++.|.++++++....... .++...+..+++.|+++||++++.+ +.+|+ ++++|++|+++++++|+++++++.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~ 431 (434)
T 3l44_A 354 NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL--TTEHTKEDIEYTIEAVGRAFAALA 431 (434)
T ss_dssp EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEEC--CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEE--ecccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999996431000 0233456778999999999999865 56665 688999999999999999998764
No 20
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=4e-45 Score=412.89 Aligned_cols=350 Identities=19% Similarity=0.239 Sum_probs=263.6
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+.+|+++..+. ++.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~ 103 (429)
T 4e77_A 34 GIPLFIERADGA--YLFDVDGK----AYIDYVGSWGPMILGHN-HPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVT 103 (429)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHH
Confidence 457789999987 69999999 99999999999999999 999999999999986532 356889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+||++.|+|++ |.+++ +.+||+++++|||.+..++..++.....
T Consensus 104 ~~~~~--~~~v~~~~sGsea~~~al~~a-~~~~~------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 104 DLVPT--MDMVRMVNSGTEATMSAIRLA-RGYTG------------------RDKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCC---------------
T ss_pred hhCCC--CCEEEEeCcHHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCChhhhhhcCCcccc
Confidence 98863 589999999999999999999 66654 3589999999999998877666533221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ .+.. ..+... .++|+|+ +.|++.+++
T Consensus 163 ~~--~~~~~~------~~~~---------~~~~~~--------~~~~~d~------------------~~le~~l~~--- 196 (429)
T 4e77_A 163 LG--QPNSPG------VPTD---------FAKHTL--------TCTYNDL------------------ASVRQAFEQ--- 196 (429)
T ss_dssp -----CCCTT------SCGG---------GGTTEE--------EECTTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC------CCCc---------cCCcee--------ecCCCCH------------------HHHHHHHHh---
Confidence 10 011000 0000 000000 0124442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
.++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|++++++++++.||++|+||++++
T Consensus 197 --~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~ 272 (429)
T 4e77_A 197 --YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGG 272 (429)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGT
T ss_pred --cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccC
Confidence 3568999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-----H---------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-----K---------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-----~---------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 273 G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (429)
T 4e77_A 273 G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV 351 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 9 69999999999999876421 0 1111222333456778899
Q ss_pred EeeeeEEEEEEecCcccC------CCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNA------GYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~------~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.|+++++++....... .++...+..+++.|+++||++++.+ .++ .+++.+|++|+++++++|++++++
T Consensus 352 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~--~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 352 NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAG--FMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCE--EEeccCCHHHHHHHHHHHHHHHHh
Confidence 999999999997542111 1233456788999999999999875 444 467899999999999999998753
No 21
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=3.7e-45 Score=413.44 Aligned_cols=351 Identities=20% Similarity=0.281 Sum_probs=273.9
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.||+ +||||++++|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~l~~~la 103 (429)
T 3k28_A 34 MNPLFMERGKGS--KVYDIDGN----EYIDYVLSWGPLIHGHA-NDRVVEALKAVAERGTSF---GAPTEIENKLAKLVI 103 (429)
T ss_dssp CCCCCEEEEEBT--EEEETTCC----EEEESCGGGTTCTTCBS-CHHHHHHHHHHHHHCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCChhhcccCCC-CHHHHHHHHHHHhhCcCc---CCCCHHHHHHHHHHH
Confidence 457789999997 69999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+.++. .++++|++||+|||+.|+|++ +.+++ +.+||.++++|||.+.+++.+++.....
T Consensus 104 ~~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 104 ERVPS--IEIVRMVNSGTEATMSALRLA-RGYTG------------------RNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred HhCCC--CCEEEEeCChHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98863 589999999999999999999 65543 3589999999999999999887754322
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|...+ +|..... ....++|||+ +.+++.+++
T Consensus 163 ~~--~~~~~~--------------------~~~~~~~---~~~~~~~~d~------------------~~le~~l~~--- 196 (429)
T 3k28_A 163 LG--LPDSPG--------------------VPEGVAK---NTITVAYNDL------------------ESVKYAFEQ--- 196 (429)
T ss_dssp -----CCCTT--------------------CCHHHHT---TEEEEETTCH------------------HHHHHHHHH---
T ss_pred cC--CCCcCC--------------------CCCcccC---ceeecCCCCH------------------HHHHHHHHh---
Confidence 11 010000 0000000 0001224442 567777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||++|| |+|.+++++++++.||++|+||++++
T Consensus 197 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 272 (429)
T 3k28_A 197 --FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGG 272 (429)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcC
Confidence 3468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh-------H------------------------------HHHHHHHHHHHcCCCeeEEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS-------K------------------------------LWDLELIQQISSHRTVQRVV 736 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~-------~------------------------------~~~~~l~~~l~~~~~v~~vr 736 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..++
T Consensus 273 G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 351 (429)
T 3k28_A 273 G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 9 79999999999998874311 0 01112222234567888999
Q ss_pred eeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|+++++++...... ..++...+..+++.|+++||++++.+ +.+|+ ++.+|++|+++++++|+++++++
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 352 RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998654210 11334456788999999999999864 55655 68999999999999999988654
No 22
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.5e-45 Score=423.44 Aligned_cols=374 Identities=16% Similarity=0.146 Sum_probs=258.8
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCC--CCChhHHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPE--NVYEPALECAELL 452 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~--~~~~~~~eLae~L 452 (818)
.++++++|. ++||.||+ +||||++|+|+.++||+ ||+|++|+++|+.+.. +.+..+ ...+.+.+++++|
T Consensus 47 ~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l 119 (472)
T 1ohv_A 47 CNYEESRGN--YLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESL 119 (472)
T ss_dssp BCGGGCBBT--EEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTG
T ss_pred ceEEEEEcC--EEEeCCCC----EEEECCCCHhhcccCCC-CHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 356677776 79999999 99999999999999999 9999999999986542 222111 1356677777778
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc--cccc--cc-ccC-CCcccccc--ceEEEEEcCCCCCCccccc
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEVL--VD-FLG-KDTTEKCI--ELKVLALKGSYHGDTLGAM 524 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~--~G~~--~~-~~~-~~~~~~~~--r~~II~~~~sYHG~t~~al 524 (818)
+++.+.+ .++|+|++||+|||++|||+| +.|+.. +|.. .+ ++. ......++ |.+||+++++|||++.+++
T Consensus 120 ~~~~~~~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~ 197 (472)
T 1ohv_A 120 LSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCL 197 (472)
T ss_dssp GGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHH
T ss_pred HHhCCCC-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHH
Confidence 8876543 689999999999999999999 544320 1100 00 000 00000023 5799999999999999999
Q ss_pred cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHH
Q 003466 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604 (818)
Q Consensus 525 s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~L 604 (818)
++++...++.. + ++.+ +..++++|. ++.+. ..+..||+ .+.....+.|
T Consensus 198 ~~~g~~~~~~~---------~--~~~~------~~~~~~~p~-~~~~~--~~~~~~~~------------~~~~~d~~~l 245 (472)
T 1ohv_A 198 ATTHSKAIHKI---------D--IPSF------DWPIAPFPR-LKYPL--EEFVKENQ------------QEEARCLEEV 245 (472)
T ss_dssp HHCCSCHHHHT---------T--SCCC------CCCEECCCC-CCSSG--GGCHHHHH------------HHHHHHHHHH
T ss_pred hcCCCcccccc---------C--CCCC------CCcccCCCc-ccCcc--ccccccch------------hHHHHHHHHH
Confidence 99976533211 0 0000 011222221 00000 00000111 1112234678
Q ss_pred HHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCC--C
Q 003466 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV--P 682 (818)
Q Consensus 605 e~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~--P 682 (818)
++.|.... ....++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||+|.+|+++++|+. |
T Consensus 246 ~~~l~~~~--~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~ 322 (472)
T 1ohv_A 246 EDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPA 322 (472)
T ss_dssp HHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCC
T ss_pred HHHHHhcC--CCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCC
Confidence 88776310 00127999999998 9999999999999999999999999999999999999999999999999997 9
Q ss_pred cEEEeccc-ccCCccccceeecchHHHh--hcc-CCh----H-----------H------------HHHHHHHHH----H
Q 003466 683 DIACYGKL-LTGGVIPLAATLATNAVFD--SFV-GDS----K-----------L------------WDLELIQQI----S 727 (818)
Q Consensus 683 DivtlgKg-LggGy~PlsAvl~~~~i~~--~l~-~~~----~-----------~------------~~~~l~~~l----~ 727 (818)
|++||||+ ||||| ++ ++++.. .+. ... . . +.+.+.+.+ .
T Consensus 323 Di~t~sK~~l~GG~-~~-----~~~~~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 323 DVMTFSKKMMTGGF-FH-----KEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp SEEEECGGGSSEEE-EE-----CGGGSCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEccccccCCc-cC-----chhhcccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 89996 32 444421 010 000 0 0 011122223 2
Q ss_pred cCC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 728 SHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 728 ~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.++ .+..+++.|+++++++... ..+..+++.|+++||++.+.+ +.||++||+.+|++||++++++|++++
T Consensus 397 ~~~~~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 397 RYPQFISRVRGRGTFCSFDTPDE--------SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp HCTTTCEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCcEEeecCCceEEEEEeCCh--------hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456 4788999999999987532 346678999999999999975 899999999999999999999999988
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 469 ~~~ 471 (472)
T 1ohv_A 469 ADF 471 (472)
T ss_dssp HTC
T ss_pred Hhc
Confidence 653
No 23
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=2.3e-44 Score=407.59 Aligned_cols=363 Identities=23% Similarity=0.276 Sum_probs=283.4
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||++++++++++||+ ||+|++|+.+|++++.+.++..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (439)
T 3dxv_A 25 FPLAISGGRGA--RLIEENGR----ELIDLSGAWGAASLGYG-HPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLA 97 (439)
T ss_dssp SCCEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHH
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 46788999987 69999999 99999999999999999 9999999999999887655455678899999999999
Q ss_pred ccCCCCC-CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC--
Q 003466 455 GVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-- 531 (818)
Q Consensus 455 ~~~~~~l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~-- 531 (818)
..+.+ . ++++|++||+||++.|++++ +.+++ +.+||+++++|||.+.+++++++...
T Consensus 98 ~~~~~-~~~~v~~~~ggsea~~~al~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 98 SFPGE-GTHKIWFGHSGSDANEAAYRAI-VKATG------------------RSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp TTTCT-TTEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHCC-------
T ss_pred hCCCC-CCCEEEEeCCHHHHHHHHHHHH-HHHhC------------------CCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 88643 4 69999999999999999998 55543 34899999999999999999987654
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
++..+ .|. ..+..+++.|+++. +. . .+ ...+.|++.+++
T Consensus 158 ~~~~~-~~~---------------~~~~~~~~~~~~~~------------~~--------~-~~---~d~~~le~~l~~- 196 (439)
T 3dxv_A 158 DAAKA-DGL---------------ILLPYPDPYRPYRN------------DP--------T-GD---AILTLLTEKLAA- 196 (439)
T ss_dssp -------CE---------------EEECCCCSSSCBTT------------BT--------T-SH---HHHHHHHHHHHT-
T ss_pred hcccc-CCC---------------CCCcEEcCCCcccc------------cc--------c-HH---HHHHHHHHHHHh-
Confidence 33321 000 01112223332210 00 0 00 124678888842
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccc
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgL 691 (818)
.+.+++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|++++++++++.||++++||++
T Consensus 197 ---~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~ 272 (439)
T 3dxv_A 197 ---VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGL 272 (439)
T ss_dssp ---SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGG
T ss_pred ---cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchh
Confidence 44678999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccceeecchHHHhhccCC-------hH---------------------------HHHHHHHHHHHcCCCeeEEEe
Q 003466 692 TGGVIPLAATLATNAVFDSFVGD-------SK---------------------------LWDLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 692 ggGy~PlsAvl~~~~i~~~l~~~-------~~---------------------------~~~~~l~~~l~~~~~v~~vrg 737 (818)
++|+ |+|++++++++++.+... .. .+.+.+.+....++.+..+++
T Consensus 273 ~~G~-riG~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (439)
T 3dxv_A 273 GGGL-PLSAVIAPAEILDCASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRG 351 (439)
T ss_dssp GTTS-CCEEEEEEHHHHTSCSSSSCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCCc-ceEEEEECHHHHhhhcCCCcCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 9995 999999999998876532 00 011122222345788899999
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.|.++.+++..+.....++...+..+++.|+++||++.+.+ +.+|++|++.+|++|+++++++|+++++++..
T Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 352 RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999965422222334557789999999999999865 89999999999999999999999999987753
No 24
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=5.7e-44 Score=402.94 Aligned_cols=351 Identities=16% Similarity=0.198 Sum_probs=274.7
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|+++++++|. ++||.+|+ +||||++++|++++||+ ||+|++|+.+|++++.+. ++.++...+|+++|+
T Consensus 33 ~~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~ 102 (427)
T 3fq8_A 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSF---GAPCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEECCCchhhhccCCC-CHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHH
Confidence 457789999997 69999999 99999999999999999 999999999999987543 247889999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
+..+. .++++|++||+||++.|+|+| +.+++ +.+||+++++|||.+..++.+++.....
T Consensus 103 ~~~~~--~~~v~~~~ggsea~~~al~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 103 DAVPS--IEMVRFVNSGTEACMAVLRIM-RAYTG------------------RDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCC--CCEEEEeCCHHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98863 589999999999999999999 66654 3589999999999999888877643221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.. .|+..+ +|...... ...++|||+ +.|++.+++
T Consensus 162 ~~--~~~~~~--------------------~~~~~~~~---~~~~~~~d~------------------~~le~~l~~--- 195 (427)
T 3fq8_A 162 LG--LPSSPG--------------------VPKKTTAN---TLTTPYNDL------------------EAVKALFAE--- 195 (427)
T ss_dssp HT--CCSCSS--------------------SCHHHHTT---EEEEETTCH------------------HHHHHHHHH---
T ss_pred cC--CCCCCC--------------------CCCcccCc---eeecCCCCH------------------HHHHHHHHh---
Confidence 10 011000 00000000 001124442 567778863
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++|+||++++
T Consensus 196 --~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 271 (427)
T 3fq8_A 196 --NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhC
Confidence 4568999999998 8999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccccceeecchHHHhhccCCh------H--------------------------------HHHHHHHHHHHcCCCeeEE
Q 003466 694 GVIPLAATLATNAVFDSFVGDS------K--------------------------------LWDLELIQQISSHRTVQRV 735 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~------~--------------------------------~~~~~l~~~l~~~~~v~~v 735 (818)
| +|+|++++++++++.+.... . .+.+.+.+.+..++.+..+
T Consensus 272 G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 350 (427)
T 3fq8_A 272 G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9 69999999999998876310 0 0111222223345667789
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++.|+++++++...... ..++...+..+++.|+++||++++.+. .|+.+++.+|++|+++++++|++++++
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 351 GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 99999999998653211 122334567889999999999998763 256789999999999999999998865
No 25
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.1e-43 Score=395.83 Aligned_cols=340 Identities=21% Similarity=0.287 Sum_probs=274.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +||||+++++++++||+ ||+|++|+.++++++.+.. ..+.++...+++++|++
T Consensus 18 ~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 89 (395)
T 3nx3_A 18 FDIVLEKGQGV--YLFDDKAK----KYLDFSSGIGVCALGYN-HAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAK 89 (395)
T ss_dssp CSCBEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHH
T ss_pred CCceEEeeeee--EEEECCCC----EEEECCCcHHhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHH
Confidence 45688898887 69999999 99999999999999999 9999999999999877654 23568899999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
..+ .++++|++||+||++.|++++ +.++...| +++.+||+++++|||.+..++++++...++.
T Consensus 90 ~~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g-------------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 152 (395)
T 3nx3_A 90 ASA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG-------------VKGGQFIAFKHSFHGRTLGALSLTANEKYQK 152 (395)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT-------------CTTCEEEEETTCCCCSSHHHHTTCCCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC-------------CCCCEEEEEcCCcCCCCHHHHhhcCCccccc
Confidence 987 379999999999999999998 55533322 2356899999999999999999887544332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .+. ..+..++ +++|+ +.|++.+.
T Consensus 153 ~~-~~~---------------~~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (395)
T 3nx3_A 153 PF-KPL---------------ISGVKFA----------------KYNDI------------------SSVEKLVN----- 177 (395)
T ss_dssp GG-CSC---------------CSCEEEE----------------CTTCH------------------HHHHTTCC-----
T ss_pred cc-CCC---------------CCCcEEe----------------CCCCH------------------HHHHHhcc-----
Confidence 20 000 0011111 13442 55665552
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ ++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++++|
T Consensus 178 ---~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G 253 (395)
T 3nx3_A 178 ---EKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG 253 (395)
T ss_dssp ---TTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT
T ss_pred ---CCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC
Confidence 57899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHH-HhhccCChH-----------------------------------HHHHHHHHHHHcCCCeeEEEee
Q 003466 695 VIPLAATLATNAV-FDSFVGDSK-----------------------------------LWDLELIQQISSHRTVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~~i-~~~l~~~~~-----------------------------------~~~~~l~~~l~~~~~v~~vrg~ 738 (818)
+|+|++++++++ ++.+..... .+.+.+.+.+..++.+..+++.
T Consensus 254 -~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (395)
T 3nx3_A 254 -LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGL 332 (395)
T ss_dssp -SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE
Confidence 699999999999 777653211 0111122223456888899999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|.++.+++... ..+..+.+.|+++||++++. ++.+|++|++.+|++|+++++++|++++++
T Consensus 333 g~~~~~~~~~~--------~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 333 GFMQGLSLDKS--------VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TTEEEEEECTT--------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCc--------chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999753 12567889999999999987 489999999999999999999999998763
No 26
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.5e-43 Score=399.93 Aligned_cols=359 Identities=20% Similarity=0.266 Sum_probs=272.8
Q ss_pred chhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhc
Q 003466 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (818)
Q Consensus 353 l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~ 432 (818)
+.++..+++|++|.. .|+++++++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVKGKGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEeeecC--EEEECCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhc
Confidence 334455666765542 46678898887 79999999 99999999999999999 999999999999987
Q ss_pred ccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEE
Q 003466 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (818)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (818)
.+.+. .+.++...+|+++|+++.+ .++++|++||+||++.|++++ +.++..+|. +++.+||++
T Consensus 90 ~~~~~-~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~------------~g~~~vi~~ 152 (420)
T 2pb2_A 90 WHTSN-VFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHS------------PFKTKIIAF 152 (420)
T ss_dssp CCCCT-TSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEE
T ss_pred ccccC-ccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccC------------CCCCEEEEE
Confidence 66432 3567899999999999986 479999999999999999998 544333222 345689999
Q ss_pred cCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 513 ~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
+++|||.+..++++++.+.++..| .|. . .+...+ +++|+
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~~~-~p~-------~--------~~~~~~----------------~~~d~--------- 191 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSDGF-GPK-------P--------ADIIHV----------------PFNDL--------- 191 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHTTS-SSC-------C--------SCEEEE----------------CTTCH---------
T ss_pred eCCcCCcCHHHHHhcCCccccccC-CCC-------C--------CCeEEe----------------cCCCH---------
Confidence 999999999888887754332210 000 0 011111 13332
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
+.|++.+. +++++|++||+ ++.||+++++++++++|+++|++||++||+|||++||||+|++
T Consensus 192 ---------~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 192 ---------HAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp ---------HHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred ---------HHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 56776663 37899999998 9999998899999999999999999999999999999999999
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------HH---------------HHH
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------LW---------------DLE 721 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~~---------------~~~ 721 (818)
++++.+++.||++||||++++| +|+|++++++++++.+..... .+ .+.
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~ 332 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQ 332 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888999999999999999999 699999999999887754211 00 011
Q ss_pred HHHHHH----cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHH
Q 003466 722 LIQQIS----SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQ 796 (818)
Q Consensus 722 l~~~l~----~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~ 796 (818)
+.+.++ .++.+..+++.|.++.+++..... ..+..+++.|+++||++.+. ++.+|++||+.+|++|+++
T Consensus 333 l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~ 406 (420)
T 2pb2_A 333 FVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHE 406 (420)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHH
Confidence 223332 346778899999999999864310 12557889999999999987 4899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 797 LLLKLYQRLEEF 808 (818)
Q Consensus 797 ~~~~l~~~l~~l 808 (818)
++++|+++++++
T Consensus 407 ~~~~l~~~l~~~ 418 (420)
T 2pb2_A 407 GMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 27
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=4.4e-43 Score=399.89 Aligned_cols=357 Identities=18% Similarity=0.212 Sum_probs=270.2
Q ss_pred EeecCCeeEEEe-CCcCccccceeecccccccccCCCCCCHHHH-H-HHHH---hhhhcccccCCCCCChhHHHHHHHHH
Q 003466 380 DSRCGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 380 ~~~~G~~~~v~D-~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~-e-Ai~~---q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
.+++|. ++|| .+|+ +|||+++++|++++||+ ||+|+ + |+.+ |++++.+.+ ..+.++...+++++|+
T Consensus 40 ~~~~g~--~~~d~~~g~----~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la 111 (449)
T 2cjg_A 40 TRSGGS--YLVDAITGR----RYLDMFTFVASSALGMN-PPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFA 111 (449)
T ss_dssp TTCBBT--EEEBTTTCC----EEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHH
T ss_pred eeeeeC--EEEECCCCc----EEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHH
Confidence 356665 7999 9999 99999999999999999 99999 9 9999 998876544 3467888999999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCC-CCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPY 532 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~-~~~ 532 (818)
++++....++|+|++||+|||+.|+|++ +.|++.+|...+ .+.+.+.+||+++++|||.+.+++++++. +.+
T Consensus 112 ~~~~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~~~------~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~ 184 (449)
T 2cjg_A 112 RVLGDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQAHG------IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTI 184 (449)
T ss_dssp HHHCCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHHTT------SCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHH
T ss_pred HhcCCCCCCEEEEeCchHHHHHHHHHHH-HHHhcccccccc------cccCCCCEEEEECCCcCCcccchhhhcCCchhh
Confidence 9885212579999999999999999999 666652100000 00023568999999999999999999875 222
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccC--ccc-hhhcccCchhHHHHHHHHHHHHHh
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS--RDE-IFYEERDSSDLASIYSSYISQNLL 609 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd--~~~-~~~~~~~~~~~~~~~~~~Le~~L~ 609 (818)
+..+ .|. .++..+++ |+| .+. .|. .....+.+.|++.|+
T Consensus 185 ~~~~-~~~---------------~~~~~~~~----------------~~d~~~~~~~~~------~~~~~~~~~le~~i~ 226 (449)
T 2cjg_A 185 TARF-PKF---------------DWPRIDAP----------------YMRPGLDEPAMA------ALEAEALRQARAAFE 226 (449)
T ss_dssp HTTS-CCC---------------CCCEECCC----------------CCCTTCCHHHHH------HHHHHHHHHHHHHHH
T ss_pred cccC-CCC---------------CCCcEEEc----------------CCCchhhccccc------hhhHHHHHHHHHHHH
Confidence 2210 000 01112222 232 110 110 111233466888886
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecc
Q 003466 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (818)
Q Consensus 610 ~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK 689 (818)
+ +.+++++|++||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++|+||
T Consensus 227 ~-----~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK 300 (449)
T 2cjg_A 227 T-----RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGK 300 (449)
T ss_dssp H-----STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECG
T ss_pred h-----cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecC
Confidence 3 2468999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccceeecchHHHhh----c-cCChH----------------HH---------------HHHHHHHHH----cC
Q 003466 690 LLTGGVIPLAATLATNAVFDS----F-VGDSK----------------LW---------------DLELIQQIS----SH 729 (818)
Q Consensus 690 gLggGy~PlsAvl~~~~i~~~----l-~~~~~----------------~~---------------~~~l~~~l~----~~ 729 (818)
++ |+|++++++++++. + ..... .+ .+.+.+.++ .+
T Consensus 301 ~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 375 (449)
T 2cjg_A 301 KT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375 (449)
T ss_dssp GG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 98 89999999999885 2 11100 00 011223332 46
Q ss_pred CC-eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 730 RT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 730 ~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+. +..+++.|.++++++... ..+..+++.|+++||++.+.| +.+|++|++.+|++||++++++|++++++
T Consensus 376 ~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 376 PAVVLDPRGRGLMCAFSLPTT--------ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp TTTSEEEEEETTEEEEECSSH--------HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceeeEeeccEEEEEEECCh--------HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 788999999999988532 235678999999999999975 89999999999999999999999998865
Q ss_pred H
Q 003466 808 F 808 (818)
Q Consensus 808 l 808 (818)
+
T Consensus 448 ~ 448 (449)
T 2cjg_A 448 V 448 (449)
T ss_dssp H
T ss_pred h
Confidence 4
No 28
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1.2e-42 Score=392.60 Aligned_cols=365 Identities=20% Similarity=0.224 Sum_probs=279.1
Q ss_pred eEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc
Q 003466 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 376 ~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (818)
|+++.+++|. ++||.+|+ +|||+.+++|+.++||+ ||+|++|+.++++++.+.. .++.++...+|+++|+++
T Consensus 26 ~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEEeecC--EEEeCCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 5567788886 79999999 99999999999999999 9999999999998876532 356688899999999999
Q ss_pred cCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCc
Q 003466 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (818)
Q Consensus 456 ~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~ 535 (818)
++.+ .++|+|++||+||++.|++++ +.+++ +.+||+++++|||.+.+++++++...+ ..
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~-~~ 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLVTG------------------KYEIVGFAQSWHGMTGAAASATYSAGR-KG 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHHHT------------------CCEEEEETTCCCCSSHHHHHTCCSSCC-SS
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEECCCcCCCChhHHhhcCCccc-cc
Confidence 8743 579999999999999999988 55543 248999999999999999988865421 11
Q ss_pred CCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 003466 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (818)
Q Consensus 536 ~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (818)
+. . ...+..+++.|..++. .|+|. .+.......+.+++.+++ .
T Consensus 157 -----~~---~--------~~~~~~~v~~~~~~~~--------~~~~~---------~~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 -----VG---P--------AAVGSFAIPAPFTYRP--------RFERN---------GAYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp -----SC---C--------CCTTEEEECCCCTTSC--------CCEET---------TEECHHHHHHHHHHHHHH----H
T ss_pred -----cC---C--------CCCCceEecCCccccc--------ccCCc---------hhhhHHHHHHHHHHHHHh----c
Confidence 00 0 0123344555544321 12320 001111224677777763 1
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCc
Q 003466 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (818)
Q Consensus 616 ~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy 695 (818)
+++++++|++||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++++||++++|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357999999998 89999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cccceeecchHHHhhccC------ChH---------------HH------------HHHHHHHHH----cCCCeeEEEee
Q 003466 696 IPLAATLATNAVFDSFVG------DSK---------------LW------------DLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~------~~~---------------~~------------~~~l~~~l~----~~~~v~~vrg~ 738 (818)
+|+|++++++++++.+.. ... .+ .+.+.+.++ .++.+..+++.
T Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 357 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR 357 (433)
T ss_dssp SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 799999999999876532 110 00 011223332 45778889999
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-----CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+++........++...+..+++.|+++||++.+.+ +.+|++|++.+|++||++++++|+++++++
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 358 GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999864310000111346678899999999998853 899999999999999999999999988654
No 29
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=7.9e-42 Score=385.63 Aligned_cols=376 Identities=27% Similarity=0.422 Sum_probs=283.9
Q ss_pred hhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccc
Q 003466 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (818)
Q Consensus 356 ~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~ 435 (818)
.+++++|+|++.+.. ..++.++.+++|. ++||.+|+ +|||+.++.|++++||+ ||+|++|+.++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~~d~~g~----~ylD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~ 78 (429)
T 1s0a_A 8 FDQRHILHPFTSMTS--PLPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSS--CCCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCC
T ss_pred HHHHhhccccccccc--cCCceeEEeeeee--EEEeCCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccc
Confidence 344678999987543 1233448888887 69999999 99999999999999999 999999999999886543
Q ss_pred cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCC
Q 003466 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (818)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~s 515 (818)
.+.++.++...+++++|+++++.+ .++++|++||+||++.|++++ +.+++.+|. + +.+||+++.+
T Consensus 79 ~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~------------~-~~~vi~~~~~ 143 (429)
T 1s0a_A 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGE------------A-RQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------C-CCEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCC------------C-CCeEEEECCC
Confidence 333456788899999999998633 579999999999999999988 656542221 1 3589999999
Q ss_pred CCCCccccccccCCCC-CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 516 YHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 516 YHG~t~~als~tg~~~-~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
|||.+..++++++... ++.. +.+ . ..+...++.|..... ++..++|
T Consensus 144 yh~~~~~~~~~~~~~~~~~~~-----~~~---~--------~~~~~~~~~~~~~~~-----~~~~~~d------------ 190 (429)
T 1s0a_A 144 YHGDTFGAMSVCDPDNSMHSL-----WKG---Y--------LPENLFAPAPQSRMD-----GEWDERD------------ 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGGG-----GTT---T--------SCCCEEECCCCSBC------CCCCGGG------------
T ss_pred CCCCchhhhhhcCCchhhccc-----ccC---C--------CCCceEeCCCccccc-----ccchHHH------------
Confidence 9999998888876432 2211 000 0 011223333321000 0000122
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.+.+++.+.+ +++++++|++||++++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++
T Consensus 191 ------~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~ 259 (429)
T 1s0a_A 191 ------MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFA 259 (429)
T ss_dssp ------GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred ------HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHH
Confidence 1556677752 23578999999965788999999999999999999999999999999999999999888
Q ss_pred hcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------hH---------------H------------H
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD---------SK---------------L------------W 718 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~---------~~---------------~------------~ 718 (818)
++++++.||++|+||+++|||+|+|++++++++++.+... .. . +
T Consensus 260 ~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~ 339 (429)
T 1s0a_A 260 CEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADI 339 (429)
T ss_dssp GGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8889999999999999999988999999999988766431 10 0 0
Q ss_pred HHHHHHHHHc---CCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHH
Q 003466 719 DLELIQQISS---HRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCS 795 (818)
Q Consensus 719 ~~~l~~~l~~---~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId 795 (818)
.+.+.+.++. ++.+..+++.|.++.+++... ..+..+.+.|+++||++++.++.+|++|++.+|++|++
T Consensus 340 ~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~Gi~v~~~~~~iRis~~~~~t~e~i~ 411 (429)
T 1s0a_A 340 EVQLREQLAPARDAEMVADVRVLGAIGVVETTHP--------VNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQ 411 (429)
T ss_dssp HHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSC--------BCHHHHHHHHHHTTEECCCBTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCc--------ccHHHHHHHHHHCCCEEeccCCEEEEECCCCCCHHHHH
Confidence 1123344443 366777899999999988542 11456888899999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003466 796 QLLLKLYQRLEE 807 (818)
Q Consensus 796 ~~~~~l~~~l~~ 807 (818)
+++++|++++++
T Consensus 412 ~~~~~l~~~~~~ 423 (429)
T 1s0a_A 412 RLTAAVNRAVQD 423 (429)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 30
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=4.5e-42 Score=388.53 Aligned_cols=351 Identities=19% Similarity=0.208 Sum_probs=266.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ .++.++...+++++|++
T Consensus 38 ~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 107 (434)
T 2epj_A 38 YPFYVKRGEGA--YLYTVDGA----RIVDLVLAYGPLILGHK-HPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILG 107 (434)
T ss_dssp SCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 36788899887 69999999 99999999999999999 99999999999988422 24568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+++ + .++++|++||+||++.|+++| |.+++ +.+||+++++|||.+..++++++......
T Consensus 108 ~~~-~-~~~v~~~~sgseA~~~al~~a-r~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 108 YVK-R-GGMIRFVNSGTEATMTAIRLA-RGYTG------------------RDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp HHC-T-TCEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhC------------------CCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 885 2 589999999999999999998 66654 24899999999999998887775432111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|+.. + .+.. .... .+. ++|+|+ +.+++.|++
T Consensus 167 ~--~p~~~--g----~~~~-~~~~--~~~--------------~~~~d~------------------~~le~~l~~---- 199 (434)
T 2epj_A 167 G--VPTSA--G----VPEA-VARL--TLV--------------TPYNDV------------------EALERVFAE---- 199 (434)
T ss_dssp C--EESST--T----CCHH-HHTT--EEE--------------EETTCH------------------HHHHHHHHH----
T ss_pred C--CCCCC--C----CCCc-ccCc--eEe--------------cCCCCH------------------HHHHHHHHh----
Confidence 0 01100 0 0000 0000 001 113442 567777762
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+|| |+|++++++++|+.||++++||++++|
T Consensus 200 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 276 (434)
T 2epj_A 200 -YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG 276 (434)
T ss_dssp -HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC
Confidence 2357999999998 8989999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCC-------hH---------------HH------------HHHHHHHHHc----CCCeeEEE
Q 003466 695 VIPLAATLATNAVFDSFVGD-------SK---------------LW------------DLELIQQISS----HRTVQRVV 736 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~-------~~---------------~~------------~~~l~~~l~~----~~~v~~vr 736 (818)
+|+|++++++++++.+... .. .+ .+.+.+.+++ ++.+..++
T Consensus 277 -~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 355 (434)
T 2epj_A 277 -FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTIN 355 (434)
T ss_dssp -SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 7999999999999877541 10 01 0112233332 36666789
Q ss_pred eeeeEEEEEEecCcc-----cCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCAIELQAAGC-----NAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 737 g~Gl~~~iel~~~~~-----~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.|.++.+++..... ...++...+..+++.|+++||++.+.+. .++.+++.+|++|+++++++|+++++++
T Consensus 356 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 356 RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL-EAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC-CcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999964210 0001123466789999999999998652 1356789999999999999999998775
No 31
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=7.9e-41 Score=377.20 Aligned_cols=347 Identities=20% Similarity=0.253 Sum_probs=263.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ .++.++...+|+++|++
T Consensus 34 ~p~~~~~~~g~--~~~d~~g~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 103 (424)
T 2e7u_A 34 TPPFLVRGEGA--YVWDADGN----RYLDYVMSWGPLILGHA-HPKVLARVRETLERGLT---FGAPSPLEVALAKKVKR 103 (424)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 46788898887 69999999 99999999999999998 99999999999987422 24568889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ + .++|+|++||+||++.|+++| |.++++ .+||+++++|||.+..++++++......
T Consensus 104 ~~~-~-~~~v~~~~~g~ea~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (424)
T 2e7u_A 104 AYP-F-VDLVRFVNSGTEATMSALRLA-RGYTGR------------------PYIVKFRGNYHGHADGLLVEAGSGALTL 162 (424)
T ss_dssp HCT-T-CCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCCCGGGSEECCSSSCCB
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 885 3 589999999999999999998 666543 4899999999999988887765432111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
. .|+.. + .+.. .... .+. ++|+|+ +.|++.+++
T Consensus 163 ~--~p~~~--g----~~~~-~~~~--~~~--------------~~~~d~------------------~~le~~l~~---- 195 (424)
T 2e7u_A 163 G--VPSSA--G----VPEE-YAKL--TLV--------------LEYNDP------------------EGLREVLKR---- 195 (424)
T ss_dssp C--EESST--T----CCHH-HHTT--EEE--------------ECTTCH------------------HHHHHHHHH----
T ss_pred C--CCCCC--C----CCCc-cCCc--eEe--------------CCCCCH------------------HHHHHHHHh----
Confidence 0 01100 0 0000 0000 011 113442 567777752
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++++||+||+ ++.+|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++|+||++++|
T Consensus 196 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 271 (424)
T 2e7u_A 196 -RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG 271 (424)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC
Confidence 2357999999998 88899999999999999999 9999999999999999 999989999999999999999999999
Q ss_pred ccccceeecchHHHhhccC-C------hH---------------HHH-------------HHHHHHHH----cCCCeeEE
Q 003466 695 VIPLAATLATNAVFDSFVG-D------SK---------------LWD-------------LELIQQIS----SHRTVQRV 735 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~-~------~~---------------~~~-------------~~l~~~l~----~~~~v~~v 735 (818)
+|+|++++++++++.+.. . .. .+. +.+.+.++ +++.+..+
T Consensus 272 -~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 350 (424)
T 2e7u_A 272 -LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350 (424)
T ss_dssp -SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred -cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 799999999999987764 1 10 111 11222332 34666678
Q ss_pred EeeeeEEEEEEecCccc-----CCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCN-----AGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++.|.++.+++...... ..++...+..+++.|+++||++.+.+. .++.+++.+|++|+++++++|++++
T Consensus 351 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 351 NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-EAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-CceEeeccCCHHHHHHHHHHHHHhC
Confidence 99999999998642100 001223466789999999999998652 1356789999999999999998763
No 32
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=7.7e-40 Score=372.54 Aligned_cols=380 Identities=17% Similarity=0.131 Sum_probs=264.5
Q ss_pred HHHHHHHhhccchhhhcCccccccCCC-CCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHH
Q 003466 342 AYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420 (818)
Q Consensus 342 ~~~~r~~~~~~l~~~~~~~~~~p~t~~-~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~ 420 (818)
.+.++..++.++.++..+++....+.. ..+ ...|+++++++|. ++||.+|+ +|||+.+++|++++||+ ||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~G~--~~~d~~g~----~~iD~~~~~~~~~lg~~-~~~ 77 (453)
T 2cy8_A 6 DYKRKTEGSVFWAQRARSVMPDGVTADTRAF-DPHGLFISDAQGV--HKTDVDGN----VYLDFFGGHGALVLGHG-HPR 77 (453)
T ss_dssp HHHHHCHHHHHHHHHHHHHSCCC------CC-SSCCCCEEEEEBT--EEEETTCC----EEEESCTTTTSCTTCBT-CHH
T ss_pred HHHhcCchhHHHHHHHHhhcCCCCCcccccc-CCCCceEEEeecC--EEEECCCC----EEEECcccHhhcccCCC-CHH
Confidence 444555556666666666553211110 011 1246788888887 69999999 99999999999999999 999
Q ss_pred HHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCc
Q 003466 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (818)
Q Consensus 421 V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~ 500 (818)
|++|+.+|+++..+ .++.++...+++++|++..+ + .++|+|++||+||++.|+++| |.+++
T Consensus 78 v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~~~------------- 138 (453)
T 2cy8_A 78 VNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVA-RAFTG------------- 138 (453)
T ss_dssp HHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHH-HHHHC-------------
T ss_pred HHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhC-------------
Confidence 99999999987432 24578899999999999876 3 589999999999999999998 66653
Q ss_pred cccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc
Q 003466 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (818)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~ 580 (818)
+.+||+++++|||.+..++++++.. +.. |+.. + .|.. ..... +. ++|
T Consensus 139 -----~~~vi~~~~~yhg~~~~~~~~~~~~-~~~----~~~~--g----~~~~-~~~~~--~~--------------~~~ 185 (453)
T 2cy8_A 139 -----RRMILRFEGHYHGWHDFSASGYNSH-FDG----QPAP--G----VLPE-TTANT--LL--------------IRP 185 (453)
T ss_dssp -----CCEEEEECC----------------------------------------CGGGE--EE--------------ECT
T ss_pred -----CCEEEEEcCCcCCCchhhHhhcCCc-cCC----CcCC--C----CCcc-ccCce--ee--------------cCC
Confidence 2489999999999998887766431 100 1100 0 0000 00000 01 113
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe
Q 003466 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (818)
Q Consensus 581 nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D 660 (818)
+|+ +.+++.+++ .++++++|++||+ ++.+|+++++++|+++|+++|++||++||+|
T Consensus 186 ~d~------------------~~le~~l~~-----~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D 241 (453)
T 2cy8_A 186 DDI------------------EGMREVFAN-----HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILD 241 (453)
T ss_dssp TCH------------------HHHHHHHHH-----HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCH------------------HHHHHHHHh-----cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 332 567777752 2357999999998 8888999999999999999999999999999
Q ss_pred ecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccC---C----hH-----------------
Q 003466 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG---D----SK----------------- 716 (818)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~---~----~~----------------- 716 (818)
|||+|| |+|++++++++++.||++++||++++| +|+|++++++++++.+.. . ..
T Consensus 242 Ev~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~ 319 (453)
T 2cy8_A 242 EVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID 319 (453)
T ss_dssp CTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHH
T ss_pred cCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHH
Confidence 999999 999988899999999999999999999 699999999999987765 1 00
Q ss_pred H-HHH-----------HHHHHHH----cCCCeeEEEeeeeEEEEEEec-----Cc------ccCCCchHHHHHHHHHHHh
Q 003466 717 L-WDL-----------ELIQQIS----SHRTVQRVVALGTLCAIELQA-----AG------CNAGYGSLYAASLLKKLRE 769 (818)
Q Consensus 717 ~-~~~-----------~l~~~l~----~~~~v~~vrg~Gl~~~iel~~-----~~------~~~~~~~~~a~~~~~~l~e 769 (818)
. +.+ .+.+.++ .++.+..+++.|.++.+++.. .. ....++...+..+++.|++
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 399 (453)
T 2cy8_A 320 TILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL 399 (453)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH
Confidence 2 211 1122232 346666789999999999964 10 0001122346678999999
Q ss_pred CCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 770 DGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 770 ~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+||++.+.+ ++ .+++.+|++||++++++|+++++++..
T Consensus 400 ~Gv~v~~~~-~~--~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 400 EGVDIGGRG-SV--FLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TTEECBTTT-EE--ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeCCC-CE--EeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 999997654 34 467999999999999999999987753
No 33
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-39 Score=366.98 Aligned_cols=363 Identities=19% Similarity=0.236 Sum_probs=271.0
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++.+++|. ++||.+|+ +|||+.++.|++++||+.||+|++|+.+++++..+.....+.++...+|+++|++
T Consensus 24 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 24 FPLVIDHGEGV--WIYDVDGN----KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCCEEEEEBT--EEEETTSC----EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 35678888886 69999999 9999999999999999767999999999998875533234667889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~ 533 (818)
+++....++++|++||+||++.|++++ +.++ +.+||+++.+|||.+..++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~~-------------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNTG-------------------RKYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTTS-------------------CCEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHhh-------------------CCcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 887431258999999999999999988 4433 2489999999999999999888754 332
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHH-HHHhcCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS-QNLLQNP 612 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le-~~L~~~~ 612 (818)
.. +.. . ..+...++.|+.++.+ |... .+ .++.+++. ...+.|+ +.+.+.
T Consensus 158 ~~-----~~~---~--------~~~~~~v~~~~~~~~~--------~g~~--~~--~~~~~~~~-~~~~~l~~~~i~~~- 207 (419)
T 2eo5_A 158 SI-----VGP---F--------MPGVIHVPYPNPYRNP--------WHIN--GY--ENPSELVN-RVIEFIEDYIFVNL- 207 (419)
T ss_dssp CS-----SCC---C--------CTTEEEECCCCSSSCT--------TCCC--TT--TCHHHHHH-HHHHHHHHTHHHHT-
T ss_pred cc-----cCC---C--------CCCCEEECCCcccccc--------cccc--cc--ccchhhHH-HHHHHHHHHHHhhc-
Confidence 21 000 0 0122333333322110 0000 00 00000111 1246777 777531
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg 692 (818)
.+++++++|++||+ ++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++||||+++
T Consensus 208 --~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~ 284 (419)
T 2eo5_A 208 --VPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG 284 (419)
T ss_dssp --CCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc
Confidence 12257899999998 898999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCccccceeecchHHHhhccCChH-------------------HHH----------HHHHHHHHcCCCeeEEEeeeeEEE
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK-------------------LWD----------LELIQQISSHRTVQRVVALGTLCA 743 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~-------------------~~~----------~~l~~~l~~~~~v~~vrg~Gl~~~ 743 (818)
+||+|+|+++++++++ .+ .... .+. +.+.+.|++. +..+++.|.++.
T Consensus 285 ~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~g~~~~ 360 (419)
T 2eo5_A 285 GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDVRGIGLAWG 360 (419)
T ss_dssp TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEEEEETTEEE
T ss_pred CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhheEeeeEEEE
Confidence 9988999999999987 65 3111 111 1122334333 567899999999
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+++..+. ..+. +++.|+++||++++.+ +.+|++|++.+|++|+++++++|+++++++
T Consensus 361 i~~~~~~-------~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 361 LEYNEKK-------VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp EECSCHH-------HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCc-------cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9884220 2355 8889999999999975 899999999999999999999999987653
No 34
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=5.4e-39 Score=357.27 Aligned_cols=340 Identities=21% Similarity=0.264 Sum_probs=272.2
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||+.+++++.++||+ ||+|.+|+.++++++.+... .+..+...+++++|++
T Consensus 18 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 89 (392)
T 3ruy_A 18 LPIVISKAEGV--WVEDPEGN----RYMDLLSAYSAVNQGHR-HPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAK 89 (392)
T ss_dssp CSCEECEEEBT--EEECTTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHH
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCChhhhccCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHH
Confidence 45688888887 69999999 99999999999999999 99999999999998876542 3557889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
.++ .++++|++||++|++.|++++++......|. .+++.+||+.+.+|||.+.+++++++...++.
T Consensus 90 ~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 3ruy_A 90 LTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKV-----------EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR 155 (392)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-----------CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT
T ss_pred hcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC-----------CCCCcEEEEEcCCcCCCCHhhhhccCChhhcc
Confidence 987 4799999999999999999884321222221 12346899999999999999999887654443
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .|. . + +... ++++|+ +.+++.+.
T Consensus 156 ~~-~~~-------~--~------~~~~----------------~~~~d~------------------~~l~~~l~----- 180 (392)
T 3ruy_A 156 GF-GPM-------L--P------GIIV----------------IPYGDL------------------EALKAAIT----- 180 (392)
T ss_dssp TC-CSC-------C--S------SEEE----------------ECTTCH------------------HHHHHHCC-----
T ss_pred cc-CCC-------C--C------CCee----------------eCcccH------------------HHHHHHhc-----
Confidence 21 010 0 0 0000 113442 56776663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
.++++|++||+ ++.+|.+.++++|+++|+++|++||++||+||+|+|||++|++++.+.+++.||++|+||+|+||
T Consensus 181 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG 256 (392)
T 3ruy_A 181 ---PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGG 256 (392)
T ss_dssp ---TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCC
Confidence 57899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHcC--CCeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
|+|+|++++++++++.+..... .+ .+.+.+.+++. +.+..+++.|.+
T Consensus 257 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 336 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLF 336 (392)
T ss_dssp TSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTE
T ss_pred hhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeE
Confidence 8899999999999887753211 00 11233445544 457788999999
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.+..+ +..+.+.|.++||++.+.+ +.+|+.|++.+|++|+++++++|++++
T Consensus 337 ~~~~~~~~----------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 337 IGIELNEP----------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEEEESSC----------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcch----------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99987542 3468889999999999875 899999999999999999999998875
No 35
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=6.4e-38 Score=349.52 Aligned_cols=346 Identities=25% Similarity=0.295 Sum_probs=273.9
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++++++|. ++||.+|+ +|||+.+++|++++||+ ||+|.+|+.++++++.+.. ..+.++...+++++|++
T Consensus 21 ~~~~~~~~~g~--~~~~~~g~----~~lD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 92 (406)
T 4adb_A 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_dssp CSSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeccC--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHh
Confidence 45578888887 69999999 99999999999999999 9999999999999865543 23567889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+.+ .++++|++||++|++.|++++ +.+....|. +++.+||+.+.+|||.+..++.+++...++.
T Consensus 93 ~~~---~~~v~~~~gg~~a~~~al~~~-~~~~~~~~~------------~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~ 156 (406)
T 4adb_A 93 ATF---ADRVFFCNSGAEANEAALKLA-RKFAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQ 156 (406)
T ss_dssp HSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEETTCCCCSSHHHHHHSSCGGGTG
T ss_pred hCC---CCeEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCCcHHHhhccCCccccc
Confidence 987 369999999999999999988 444322222 4456899999999999999888887554332
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ . +.. .+... ++++|+ +.|++.+.
T Consensus 157 ~~-----~-------~~~----~~~~~----------------~~~~d~------------------~~l~~~l~----- 181 (406)
T 4adb_A 157 DF-----A-------PLP----ADIRH----------------AAYNDI------------------NSASALID----- 181 (406)
T ss_dssp GG-----C-------SCC----SSEEE----------------ECTTCH------------------HHHHTTCS-----
T ss_pred cC-----C-------CCC----CCceE----------------eCCCcH------------------HHHHHHhc-----
Confidence 20 0 000 01111 113332 45555442
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|++||+ ++.||+++++.+++++|.++|++||++||+||+++|||++|..++.+.+++.||++||+|++++|
T Consensus 182 ---~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 257 (406)
T 4adb_A 182 ---DSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257 (406)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC
Confidence 57899999998 99999999999999999999999999999999999999999999989999999999999999999
Q ss_pred ccccceeecchHHHhhccCChH----------------HH---------------HHHHHHHHH----cCCCeeEEEeee
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW---------------DLELIQQIS----SHRTVQRVVALG 739 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~---------------~~~l~~~l~----~~~~v~~vrg~G 739 (818)
+|+|++++++++++.+..... .+ .+.+.+.++ .++.+.++++.|
T Consensus 258 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g 336 (406)
T 4adb_A 258 -FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLG 336 (406)
T ss_dssp -SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred -CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 799999999999987753211 00 011222232 246678899999
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.++.+++.... ...+..+++.|+++||++.+.+ +.+|+.|++.+|++|+++++++|+++++++..
T Consensus 337 ~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 337 LLIGCVLNADY------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TEEEEEECTTT------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeCCc------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999997531 0125678899999999999875 89999999999999999999999999987753
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=4.2e-37 Score=345.43 Aligned_cols=378 Identities=24% Similarity=0.312 Sum_probs=280.5
Q ss_pred hhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc
Q 003466 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (818)
Q Consensus 354 ~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~ 433 (818)
.+++.+++|++++. ..|.++.+++|. ++||.+|+ +|||+.++.|+.++||. +|+|.+|+.++++++.
T Consensus 8 ~~~~~~~~~~~~~~------~~~~~~~~~~g~--~~~d~~g~----~~id~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~ 74 (426)
T 1sff_A 8 MQRRSQAIPRGVGQ------IHPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLS 74 (426)
T ss_dssp HHHHHHHSCTTBCC------SEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTCS
T ss_pred HHHHHHhcCccccc------cCCceEEecccC--EEEeCCCC----EEEEcccChhhcccCCC-CHHHHHHHHHHHHhCC
Confidence 34445566766543 247788898887 69999999 99999999999999998 9999999999998866
Q ss_pred cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEc
Q 003466 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (818)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (818)
+.....+.++...+|.++|+++++.+..+.++|+++|++|++.|+++| +.+++ +.+||+.+
T Consensus 75 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~~------------------~~~vi~~~ 135 (426)
T 1sff_A 75 HTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATK------------------RSGTIAFS 135 (426)
T ss_dssp CCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEET
T ss_pred CccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEEC
Confidence 533223457788999999999884221268999999999999999987 55543 23799999
Q ss_pred CCCCCCccccccccCCC-CCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccC
Q 003466 514 GSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (818)
Q Consensus 514 ~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~ 592 (818)
.+|||.+..++.+++.. .++.. .++. ..+...+++|.++. +.
T Consensus 136 p~y~~~~~~~~~~~g~~~~~~~~--------~~~~--------~~~v~~v~~~~~~~-----------~~---------- 178 (426)
T 1sff_A 136 GAYHGRTHYTLALTGKVNPYSAG--------MGLM--------PGHVYRALYPCPLH-----------GI---------- 178 (426)
T ss_dssp TCCCCSSHHHHHHSSCCTTTTTT--------SCCC--------CSSEEEECCCBGGG-----------TB----------
T ss_pred CCcCCCchHhhhhcCCccccccc--------cCCC--------CCCcEEeCCCcccc-----------cc----------
Confidence 99999998888877643 12211 0000 01122333332210 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc
Q 003466 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (818)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~ 672 (818)
. .....+.|++.+++. .++.++++|++||+ ++++|++.++++++++|+++|++||++||+||+++|||++|.+
T Consensus 179 ~---~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 251 (426)
T 1sff_A 179 S---EDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL 251 (426)
T ss_dssp C---HHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred c---hHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch
Confidence 0 001135677777531 12357899999998 7778988999999999999999999999999999999999998
Q ss_pred chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-------------------HH------------HHH
Q 003466 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-------------------LW------------DLE 721 (818)
Q Consensus 673 ~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~ 721 (818)
++++.+++.||+++|||++++| +|+|++++++++++.+..... .+ .+.
T Consensus 252 ~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 330 (426)
T 1sff_A 252 FAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQK 330 (426)
T ss_dssp SGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888899999999999999999 799999999999887753110 00 011
Q ss_pred HHHHHH----cCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHH
Q 003466 722 LIQQIS----SHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVC 794 (818)
Q Consensus 722 l~~~l~----~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edI 794 (818)
+.+.++ .++.+..+++.|.++.+++........+....+..+++.|+++||++.+.+ +.+|+.+++.++++|+
T Consensus 331 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 331 LKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHH
Confidence 222332 366677788899999999864211111122346678899999999999854 8999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEF 808 (818)
Q Consensus 795 d~~~~~l~~~l~~l 808 (818)
++++++|+++++++
T Consensus 411 ~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 411 RQGLEIISQCFDEA 424 (426)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=4.7e-35 Score=326.38 Aligned_cols=340 Identities=20% Similarity=0.282 Sum_probs=261.6
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ +|+|.+|+.++++++.+... .+..+...+++++|+
T Consensus 21 ~~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la 92 (397)
T 2ord_A 21 RFPATFVYGKGS--WIYDEKGN----AYLDFTSGIAVNVLGHS-HPRLVEAIKDQAEKLIHCSN-LFWNRPQMELAELLS 92 (397)
T ss_dssp CCSCEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCSCCCT-TSEEHHHHHHHHHHH
T ss_pred CCCceEEeeecC--EEEECCCC----EEEECCccccccccCCC-CHHHHHHHHHHHHhcccCcc-ccCCHHHHHHHHHHH
Confidence 467788898887 69999999 99999999999999998 99999999999988765321 234678899999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++ .++++|++||++|++.|++.+ +.+... |. +++.+||+++.+|||.+..++..++...++
T Consensus 93 ~~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~------------~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~ 155 (397)
T 2ord_A 93 KNTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS------------EKKYRILSAHNSFHGRTLGSLTATGQPKYQ 155 (397)
T ss_dssp HTTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC------------TTCCEEEEEBTCCCCSSHHHHHHSBCHHHH
T ss_pred HhcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC------------CCCceEEEEcCCcCCCchhhhhccCChhhc
Confidence 9987 379999999999999999987 433211 10 223579999999999998777776543222
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ .|. + .+...+ +++|+ +.+++.+.
T Consensus 156 ~~~-~p~-------~--------~~~~~~----------------~~~d~------------------~~l~~~l~---- 181 (397)
T 2ord_A 156 KPF-EPL-------V--------PGFEYF----------------EFNNV------------------EDLRRKMS---- 181 (397)
T ss_dssp GGG-CSC-------C--------TTEEEE----------------CTTCH------------------HHHHHHCC----
T ss_pred ccc-CCC-------C--------CCeeEe----------------cCCCH------------------HHHHHHhh----
Confidence 110 000 0 011111 12332 55666663
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++|++||+ ++.+|.+.++.+++++|.++|++||++||+||+++||+++|+.+..+.+++.||+++++|++++
T Consensus 182 ----~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~ 256 (397)
T 2ord_A 182 ----EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGG 256 (397)
T ss_dssp ----TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGT
T ss_pred ----cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCC
Confidence 37899999996 9999997789999999999999999999999999999999988777888989999999999999
Q ss_pred CccccceeecchHHHhhccCChH----------------H---------------HHHHHHHHHH----cCCCeeEEEee
Q 003466 694 GVIPLAATLATNAVFDSFVGDSK----------------L---------------WDLELIQQIS----SHRTVQRVVAL 738 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~~~----------------~---------------~~~~l~~~l~----~~~~v~~vrg~ 738 (818)
| +|+|+++++++++ .+..... . ..+.+.+.++ .++.+..+++.
T Consensus 257 G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 334 (397)
T 2ord_A 257 G-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGM 334 (397)
T ss_dssp T-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred C-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEE
Confidence 9 5999999998877 6542110 0 0011223332 35666678889
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
|.++.+++... ..+..+++.|+++||++.+. .+.+|++|++.++++|+++++++|++++++
T Consensus 335 g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 335 GLMIGIQFREE--------VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TTEEEEEECTT--------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCh--------HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 99999988643 12556888999999999987 489999999999999999999999988753
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=5.7e-33 Score=309.00 Aligned_cols=333 Identities=21% Similarity=0.275 Sum_probs=257.1
Q ss_pred CeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHh
Q 003466 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (818)
Q Consensus 375 ~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (818)
.|.++.++.|. ++||.+|+ +|||+.++.|++++||. +|+|.+|+.++++++.+.. ..+..+...+++++|++
T Consensus 27 ~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 98 (395)
T 1vef_A 27 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 98 (395)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCccEEecccC--EEEeCCCC----EEEEccCccccccCCCC-CHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHH
Confidence 45678888886 79999999 99999999999999998 9999999999998865432 12357889999999999
Q ss_pred ccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCC
Q 003466 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (818)
Q Consensus 455 ~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~ 534 (818)
+++.+ .+.++|++||++|++.|++.+ +.++. +.+||+.+.+|||.+..++.++|....+.
T Consensus 99 ~~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~~------------------~~~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 99 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTG------------------RKKFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcCCC-cCEEEEcCcHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCCcCCCchhhhhhcCCccccc
Confidence 98532 478999999999999999987 43332 24799999999999877776665431111
Q ss_pred cCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 535 ~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
.+ .|. . .+... ++++| .+.+++.+.
T Consensus 159 ~~-~p~-------~--------~~~~~----------------~~~~d------------------~~~l~~~i~----- 183 (395)
T 1vef_A 159 PF-LPL-------V--------EPVEF----------------IPYND------------------VEALKRAVD----- 183 (395)
T ss_dssp GG-CSC-------S--------SCEEE----------------ECTTC------------------HHHHHHHCC-----
T ss_pred cc-CCC-------C--------CCeeE----------------eCCCc------------------HHHHHHHhc-----
Confidence 00 000 0 00000 01223 256666663
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCC
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggG 694 (818)
+++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+++|||++|+.+..+.+++.||+++++|.+++|
T Consensus 184 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g 259 (395)
T 1vef_A 184 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 259 (395)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC
Confidence 36899999998 88889998899999999999999999999999999999999888778889999999999999999
Q ss_pred ccccceeecchHHHhhccCChH-------------------HH------------HHHHHHHHHcCC--CeeEEEeeeeE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK-------------------LW------------DLELIQQISSHR--TVQRVVALGTL 741 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~-------------------~~------------~~~l~~~l~~~~--~v~~vrg~Gl~ 741 (818)
+++|++++++++++.+..... .+ .+.+.+.+++.+ .+..+++.|.+
T Consensus 260 -~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 338 (395)
T 1vef_A 260 -VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLM 338 (395)
T ss_dssp -SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTE
T ss_pred -CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEE
Confidence 799999999999887754110 00 112334455443 34567788989
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+++..+ +..+++.|. ++||++.+.+ +.+|+.+++.+|++|+++++++|.+++
T Consensus 339 ~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 339 VGLELKEK----------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEESSC----------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCh----------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 98888532 346788898 9999999864 899999999999999999999998875
No 39
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=100.00 E-value=2.6e-33 Score=295.36 Aligned_cols=192 Identities=22% Similarity=0.220 Sum_probs=163.4
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCC-CCCchHHHHHhccCCccccCCCcccccc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (818)
..|+.|||+||+||+|||+||++|+++|. ++|++|+|||||++|+. .+.|..++.+.+ ++
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~-g~------------- 84 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRLA-GV------------- 84 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHHH-CC-------------
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHHc-CC-------------
Confidence 34789999999999999999999999994 89999999999999873 457777776553 22
Q ss_pred cchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCC-CC
Q 003466 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VV 192 (818)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~-~~ 192 (818)
. ...|+|.|+.|++|+++++.+ ++ .+
T Consensus 85 ---------------------------~-------------------------~~~~~~~~~~p~sP~~aa~~~-~~~~~ 111 (251)
T 3fgn_A 85 ---------------------------T-------------------------QLAGLARYPQPMAPAAAAEHA-GMALP 111 (251)
T ss_dssp ---------------------------C-------------------------EEEEEEECSSSSCHHHHHHHT-TCCCC
T ss_pred ---------------------------C-------------------------CCCCCeeECCCCChHHHHHHc-CCCCC
Confidence 0 115689999999999999998 77 78
Q ss_pred ChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCC-CchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
..++|.+.|+++.++ +|++||||+||+++|+..+ .+++|+|+.+++|||||++.++|+++++++++
T Consensus 112 ~~~~i~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 112 ARDQIVRLIADLDRP-------------GRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp CHHHHHHHHHTTCCT-------------TCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHH
Confidence 899999998886544 9999999999999997665 89999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCC-C------CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 272 ESLKLRGYDVVAVVFEDHGL-V------NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~-~------~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
++++.++++|.|||+|++.. . +.+.|+++ +|||| ||+.+.
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~----vpvLG~iP~~~~ 226 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI----AMVRAALPAGAA 226 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH----SCEEEEEETTGG
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh----CCEEEEeeCCCC
Confidence 99999999999999999832 2 23334433 99999 999764
No 40
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.7e-31 Score=292.81 Aligned_cols=336 Identities=20% Similarity=0.256 Sum_probs=256.1
Q ss_pred CCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHH
Q 003466 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (818)
Q Consensus 374 ~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (818)
..|.++.+++|. ++||.+|+ .|||+.++.+++.+||. +|++.+|+.++++++++.. ..+..+...+|.++|+
T Consensus 9 ~~~~~~~~~~g~--~~~~~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la 80 (375)
T 2eh6_A 9 RLPVKFVRGKGV--YLYDEEGK----EYLDFVSGIGVNSLGHA-YPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLV 80 (375)
T ss_dssp CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHH
T ss_pred CCCccEEeeecC--EEEeCCCC----EEEEcCCcccccccCCC-CHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHH
Confidence 457788898887 69999999 99999999988899999 9999999999998764422 1234567889999999
Q ss_pred hccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 454 ~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
++++.+ +.++++++|++|++.|++++ +.++.+ |. +++.+||+.+.+||+....++.+++...++
T Consensus 81 ~~~g~~--~~v~~~~g~t~a~~~~~~~~-~~~~~~-~~------------~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~ 144 (375)
T 2eh6_A 81 KHFWTE--GKVFFANSGTESVEAAIKLA-RKYWRD-KG------------KNKWKFISFENSFHGRTYGSLSATGQPKFH 144 (375)
T ss_dssp HTSSSC--EEEEEESSHHHHHHHHHHHH-HHHHHH-TT------------CCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred hhcCCC--CeEEEeCchHHHHHHHHHHH-HHHhcc-CC------------CCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence 998731 78999999999999999986 544310 11 334589999999999988777766543221
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
..+ .|. . ++...+ +++|+ +.+++.+.
T Consensus 145 ~~~-~~~--------~-------~~~~~~----------------~~~d~------------------~~l~~~l~---- 170 (375)
T 2eh6_A 145 KGF-EPL--------V-------PGFSYA----------------KLNDI------------------DSVYKLLD---- 170 (375)
T ss_dssp TTT-CSC--------C-------SSEEEE----------------CTTCH------------------HHHHTTCC----
T ss_pred CCC-CCC--------C-------CCceeC----------------CCchH------------------HHHHHHhc----
Confidence 110 000 0 000011 12221 45555442
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccC
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLgg 693 (818)
+++++|+++|+ ++..|.+.++.+++++|.++|++||+++|+||+++|||++|..+..+.+|+.||++++||.+++
T Consensus 171 ----~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~ 245 (375)
T 2eh6_A 171 ----EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGG 245 (375)
T ss_dssp ----TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ----CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccC
Confidence 36899999997 9999999889999999999999999999999999999999987777888889999999999999
Q ss_pred CccccceeecchHHHhhccCC--hH-----------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 694 GVIPLAATLATNAVFDSFVGD--SK-----------------LW----------DLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 694 Gy~PlsAvl~~~~i~~~l~~~--~~-----------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
| +++|++++++++++.+... .. .+ .+.+.+.+++.+. ..+++.|.++.+
T Consensus 246 g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~ 323 (375)
T 2eh6_A 246 G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGK-GKVKGRGLMLGL 323 (375)
T ss_dssp T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SEEEEETTEEEE
T ss_pred C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEEEEE
Confidence 9 7999999999998877541 10 00 0123344555543 456788999888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
++..+ +..+++.|+++||++.+. .+.+|+.++..++++|+++++++|+++
T Consensus 324 ~~~~~----------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 324 ELERE----------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp ECSSC----------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEcCc----------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 87532 345788899999999986 489999999999999999999999875
No 41
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=100.00 E-value=4.9e-33 Score=291.72 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=162.7
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCC----CCchHHHHHhccCCccccCCCc
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH----DSDSRFLFTKLPSLSLRRNFPS 108 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~----~~d~~~~~~~~~~~~~~~~~~~ 108 (818)
|..|++.|||+||+||+|||+||++|+++|. ++|++|+|||||++|+.. +.|..++.+....+
T Consensus 17 ~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~-------- 83 (242)
T 3qxc_A 17 LYFQGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL-------- 83 (242)
T ss_dssp --CCCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT--------
T ss_pred HhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH--------
Confidence 5577899999999999999999999999994 899999999999998863 56666652211000
Q ss_pred ccccccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhc
Q 003466 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188 (818)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~ 188 (818)
...+++ ..+++|.|++|++|+++++.+
T Consensus 84 ---------------------~~g~~~-------------------------------~~~~p~~~~~p~sp~~aa~~~- 110 (242)
T 3qxc_A 84 ---------------------DRSLTL-------------------------------KDISFYRYHKVSAPLIAQQEE- 110 (242)
T ss_dssp ---------------------CTTCCH-------------------------------HHHCCEECSSSSCHHHHHHHH-
T ss_pred ---------------------hCCCCh-------------------------------HHeeeEEECCCCChHHHHHHc-
Confidence 000111 226799999999999999998
Q ss_pred CC--CCChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHH
Q 003466 189 GG--VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISG 266 (818)
Q Consensus 189 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~ 266 (818)
+. .+..++|.+.|+++.++ +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|+++|
T Consensus 111 g~~~~i~~~~I~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~ 177 (242)
T 3qxc_A 111 DPNAPIDTDNLTQRLHNFTKT-------------YDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLIND 177 (242)
T ss_dssp CTTCCCCHHHHHHHHHHGGGT-------------CSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHH
Confidence 77 78999999999987765 9999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcC-CCCEEe-cCCC
Q 003466 267 TISAYESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRN-RVPVLV-LPPL 313 (818)
Q Consensus 267 ~~~~~~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~-~~pvlg-iP~~ 313 (818)
+++++++++.+|++ .|||+|++..+ ...+|+++..+ ..|++. .|.+
T Consensus 178 ~~lt~~~l~~~g~~-~GvIlN~v~~~~~~~~~~~p~le~~~~~~~~~~~~~~~~~ 231 (242)
T 3qxc_A 178 CLLNDFLLKSHQLD-YKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSL 231 (242)
T ss_dssp HHHHHHHHHTSSSC-EEEEECCCTTCCHHHHHTHHHHHHHHHHCSSCCEEGGGCH
T ss_pred HHHHHHHHHhCCCC-EEEEEeCCCCccchhhhhHHHHHHhcCcccCCceeccccH
Confidence 99999999999999 99999999443 24445555422 456655 4443
No 42
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=100.00 E-value=2.7e-33 Score=291.67 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=167.3
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (818)
.|++|||+||+||+|||+||++|+++|. ++|++|+|||||++|+....+.. .
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~~-~---------------------- 54 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSELC-E---------------------- 54 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSSB-H----------------------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCCC-C----------------------
Confidence 4789999999999999999999999994 89999999999999875432210 0
Q ss_pred hhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChh
Q 003466 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (818)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (818)
.+|+.. .+++.+.++ ...|+|.|+.|++||++++.+ +..+..+
T Consensus 55 ---~~D~~~--~~~~~~~~~-------------------------------~~~~~~~~~~p~sp~~aa~~~-~~~i~~~ 97 (228)
T 3of5_A 55 ---DVESIL--NAYKHKFTA-------------------------------AEINLISFNQAVAPHIIAAKT-KVDISIE 97 (228)
T ss_dssp ---HHHHHH--HHTTTSSCH-------------------------------HHHCSEEESSSSCHHHHHHHT-TCCCCHH
T ss_pred ---hHHHHH--HhcCCCCCh-------------------------------hhEEEEEECCCCCHHHHHHHc-CCCCCHH
Confidence 011111 111111111 226799999999999999998 8888999
Q ss_pred HHHHHHHH-HHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 196 KVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 196 ~i~~~~~~-~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+|.+.+++ +.++ +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++.+++.+
T Consensus 98 ~i~~~~~~~l~~~-------------~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l 164 (228)
T 3of5_A 98 NLKQFIEDKYNQD-------------LDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINEL 164 (228)
T ss_dssp HHHHHHHGGGGSS-------------CSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-------------CCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHH
Confidence 99999987 6544 999999999999999988899999999999999999999999999999999999
Q ss_pred HhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCCCCCcchhhhhhh
Q 003466 275 KLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFD 326 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l~ 326 (818)
+.++++|.|||+|++..+ +.+.|++++ ++||+| || ...++..|++
T Consensus 165 ~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~--g~pvLG~iP-----~~~~~~~~~~ 216 (228)
T 3of5_A 165 NRHNIKLAGWIANCNDSNIKYIDEQINTIEELS--GYKCSAKIS-----RNADYLDFID 216 (228)
T ss_dssp HHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHH--SCCCSEEEE-----SSCCHHHHHH
T ss_pred HhCCCcEEEEEEECcCCcchhhHHHHHHHHHhh--CCCEEEECC-----CchHhhhhcC
Confidence 999999999999998332 355666677 999999 99 2345566664
No 43
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=2.8e-27 Score=267.19 Aligned_cols=313 Identities=11% Similarity=0.057 Sum_probs=229.4
Q ss_pred EEE-eecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHH
Q 003466 378 VID-SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (818)
Q Consensus 378 vi~-~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (818)
++. +++|. +++| ||+ +||||.++ .++| |. ||+|.+|+.+++++++... ...+.++...+|+++
T Consensus 49 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~lg~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 117 (427)
T 2w8t_A 49 VMEQVKSPT--EAVI-RGK----DTILLGTY---NYMGMTF-DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQA 117 (427)
T ss_dssp CCSEEEETT--EEEE-TTE----EEEECSCC---CTTCGGG-CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHH
T ss_pred eccccCCCc--eEee-CCc----eEEEEECc---ccccCCC-CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHH
Confidence 345 67776 6999 999 99999996 4689 67 9999999999998865321 122346888999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+++++ .+.+++++||++||+.|++.+ + ++.+.|.++..+|+++..++...|...
T Consensus 118 la~~~g---~~~~i~~~sGs~a~~~al~~l----~------------------~~gd~vl~~~~~h~~~~~~~~~~g~~~ 172 (427)
T 2w8t_A 118 LRDFYG---TTGAIVFSTGYMANLGIISTL----A------------------GKGEYVILDADSHASIYDGCQQGNAEI 172 (427)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----S------------------CTTCEEEEETTCCHHHHHHHHHSCSEE
T ss_pred HHHHhC---CCceEEecCcHHHHHHHHHHh----c------------------CCCCEEEECCcccHHHHHHHHHcCCee
Confidence 999997 468899999999999998875 1 123566778889998877666554221
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
+.+| ++|+ +.|++.|++.
T Consensus 173 ------------------------------~~~~--------------~~d~------------------~~le~~l~~~ 190 (427)
T 2w8t_A 173 ------------------------------VRFR--------------HNSV------------------EDLDKRLGRL 190 (427)
T ss_dssp ------------------------------EEEC--------------TTCH------------------HHHHHHHHTS
T ss_pred ------------------------------EEeC--------------CCCH------------------HHHHHHHHhc
Confidence 1111 3442 5677777631
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCCCCc----EE
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IA 685 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv~PD----iv 685 (818)
..+++++|++||+ ++..|.+.+ +++|+++|++||++||+||++++ +|++|.. ..+++++.|| +.
T Consensus 191 ----~~~~~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~ 260 (427)
T 2w8t_A 191 ----PKEPAKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVG 260 (427)
T ss_dssp ----CSSSCEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEE
T ss_pred ----cCCCCeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEe
Confidence 1137899999998 899998886 99999999999999999999986 3455554 4566888877 77
Q ss_pred EecccccCCccccceeecchHHHhhccCChH---------------------HH-------------HHHHHHHHHcCCC
Q 003466 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------LW-------------DLELIQQISSHRT 731 (818)
Q Consensus 686 tlgKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~-------------~~~l~~~l~~~~~ 731 (818)
+++|++| +|.|++++++++++.+..... .+ .+.+.+.+++.+.
T Consensus 261 s~sK~~g---~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 261 TFSKSVG---TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp ESSSTTC---SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhhhc---cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999996 467889999998887654311 00 0122333443332
Q ss_pred eeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHH
Q 003466 732 VQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
...... .|.++.+.+... ..+..+++.|+++||++.+.. +.+|+.++..+|++||++++++|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~ 409 (427)
T 2w8t_A 338 RLGTETCDSAIVAVMLEDQ--------EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQ 409 (427)
T ss_dssp EESCSSCCSSEEEEEESSH--------HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEECCH--------HHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 110023 677888877532 346788999999999998742 589999999999999999999999
Q ss_pred HHHHHHH
Q 003466 803 QRLEEFD 809 (818)
Q Consensus 803 ~~l~~l~ 809 (818)
++++++.
T Consensus 410 ~~l~~~~ 416 (427)
T 2w8t_A 410 AAGRAVG 416 (427)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9987764
No 44
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.94 E-value=9.1e-27 Score=260.63 Aligned_cols=301 Identities=11% Similarity=0.005 Sum_probs=223.3
Q ss_pred eEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCC
Q 003466 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWAS 462 (818)
Q Consensus 387 ~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~ 462 (818)
++++|.+|+ +||||+| ++++|+..||+|++|+.+++++++... ...+..+...+++++|+++++. +
T Consensus 51 ~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~ 120 (409)
T 3kki_A 51 LVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF---D 120 (409)
T ss_dssp TTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC---S
T ss_pred eeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC---C
Confidence 457788999 9999988 567888559999999999999865321 1123456778899999999873 5
Q ss_pred cEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCccc
Q 003466 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (818)
Q Consensus 463 ~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~ 542 (818)
.+++++||++|++.|++.. .++.+.|.++..+|+.+..++...|....
T Consensus 121 ~~i~~~sGt~a~~~~l~~~----------------------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~---------- 168 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTI----------------------CQPNTNVYIDFFAHMSLWEGARYANAQAH---------- 168 (409)
T ss_dssp EEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTSCHHHHHHHHHTTCEEE----------
T ss_pred eEEEecchHHHHHHHHHHh----------------------cCCCCEEEECCCcCHHHHHHHHHcCCeEE----------
Confidence 7888899999999999966 12235677788889888777666543210
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
.+| ++| .+.+++.+.+ .+.++
T Consensus 169 --------------------~~~--------------~~d------------------~~~le~~l~~-------~~~~~ 189 (409)
T 3kki_A 169 --------------------PFM--------------HNN------------------CDHLRMLIQR-------HGPGI 189 (409)
T ss_dssp --------------------EEC--------------TTC------------------HHHHHHHHHH-------HCSCE
T ss_pred --------------------Eec--------------CCC------------------HHHHHHHHHh-------cCCeE
Confidence 001 222 2567777763 12489
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC--cccCCccchhcccCC--CCcE--EEecccccCCcc
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTGGVI 696 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG--fGRtG~~~a~e~~gv--~PDi--vtlgKgLggGy~ 696 (818)
|+++++ ++..|.+.+ +++|+++|++||++||+||++++ +|++|..+. +.+++ .+|+ .+++|++++|
T Consensus 190 vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~-- 261 (409)
T 3kki_A 190 IVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYR-- 261 (409)
T ss_dssp EEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCSS--
T ss_pred EEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCCC--
Confidence 999998 898998876 99999999999999999999998 899988766 56677 5777 6899999876
Q ss_pred ccceeecchHHHhhccCChH---------------------HH-------------HHHHHHHHHcCCCeeEEEeeeeEE
Q 003466 697 PLAATLATNAVFDSFVGDSK---------------------LW-------------DLELIQQISSHRTVQRVVALGTLC 742 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~---------------------~~-------------~~~l~~~l~~~~~v~~vrg~Gl~~ 742 (818)
.|++++++++++.+..... .+ .+.+.+.+++.+. .+.+.|.++
T Consensus 262 -gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~ 338 (409)
T 3kki_A 262 -AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGL--TIRSESQII 338 (409)
T ss_dssp -CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTC--CCCCSSSEE
T ss_pred -ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC--ccCCCCCEE
Confidence 4788899888776533110 00 0123344454432 233678888
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+... ..+..+++.|+++||++.+. .+.+|+.++..+|++||++++++|+++++.
T Consensus 339 ~~~~~~~--------~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 339 GLETGDE--------RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEEESH--------HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCH--------HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 8888643 34667899999999999652 268999999999999999999999998865
No 45
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=6.3e-27 Score=263.36 Aligned_cols=320 Identities=11% Similarity=0.055 Sum_probs=222.2
Q ss_pred cCCeeEEEeCC--cCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-
Q 003466 383 CGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG- 459 (818)
Q Consensus 383 ~G~~~~v~D~d--G~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~- 459 (818)
+|.++++||.+ |+ +|||+..+ .+..+. +|+|++|+.+++++..+. +.....+...++++++.+..+.+
T Consensus 47 ~g~g~~~~d~~~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~l~~~l~~~~g~~~ 117 (421)
T 3l8a_A 47 LNQFTYKWKTSENNP----ELLQMWVA---DMDFLP-VPEIKEAIINYGREHIFG-YNYFNDDLYQAVIDWERKEHDYAV 117 (421)
T ss_dssp TTTTBTTTGGGTTCT----TCEECCSS---CCCSCC-CHHHHHHHHHHHHHCCSS-CBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCccccccCCCC----CeeecccC---CCCCCC-CHHHHHHHHHHHhcCCcC-CCCCCHHHHHHHHHHHHHHhCCCC
Confidence 34445799999 78 99999664 344457 999999999999863322 11223567778888888766511
Q ss_pred CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCC
Q 003466 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (818)
Q Consensus 460 ~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p 539 (818)
..+.++|+++|+||++.|++.+. ..| .+||+...+||+....+... |...
T Consensus 118 ~~~~v~~~~g~~ea~~~a~~~~~-----~~g----------------d~Vi~~~~~y~~~~~~~~~~-g~~~-------- 167 (421)
T 3l8a_A 118 VKEDILFIDGVVPAISIALQAFS-----EKG----------------DAVLINSPVYYPFARTIRLN-DHRL-------- 167 (421)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHS-----CTE----------------EEEEEEESCCHHHHHHHHHT-TEEE--------
T ss_pred CHHHEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCCcHHHHHHHHHC-CCEE--------
Confidence 13689999999999999999871 122 47999999999965433322 2110
Q ss_pred cccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
..+++. +.. ++. ..| .+.|++.+.+ .+
T Consensus 168 --------------------~~~~~~--~~~-----~~~-~~d------------------~~~le~~i~~-------~~ 194 (421)
T 3l8a_A 168 --------------------VENSLQ--IIN-----GRF-EID------------------FEQLEKDIID-------NN 194 (421)
T ss_dssp --------------------EEEECE--EET-----TEE-ECC------------------HHHHHHHHHH-------TT
T ss_pred --------------------Eecccc--ccC-----CCe-eeC------------------HHHHHHHhhc-------cC
Confidence 001110 000 000 011 2567777752 46
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----h--cccCCCCcEEEeccccc-
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----A--DLLGCVPDIACYGKLLT- 692 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~--e~~gv~PDivtlgKgLg- 692 (818)
+++|+++++ ++.+| .+++++++++|+++|++||++||+||||++|+++|..+. . +.+++.+++.+++|++|
T Consensus 195 ~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 272 (421)
T 3l8a_A 195 VKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNI 272 (421)
T ss_dssp EEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTC
T ss_pred CeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccC
Confidence 889999997 99999 455888999999999999999999999999999986321 1 23466678899999998
Q ss_pred CCccccceeecc-hHHHhhccCChH-----------------HH-----------------HHHHHHHHHcCCCeeEEEe
Q 003466 693 GGVIPLAATLAT-NAVFDSFVGDSK-----------------LW-----------------DLELIQQISSHRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~~-~~i~~~l~~~~~-----------------~~-----------------~~~l~~~l~~~~~v~~vrg 737 (818)
+| +|+|+++++ +++++.+..... .+ .+.+.+.+++++.+..+++
T Consensus 273 ~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 273 AG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred ch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 78 799999998 888775532110 00 1123344555577777888
Q ss_pred eeeEEE-EEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCA-IELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 738 ~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.|.++. +++.... ..+..+.+.|++ +||++.++ .+.+|+.++ +++++|++++++|.++++
T Consensus 352 ~~~~~~~v~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYA-------IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGT-------CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccC-------CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 888887 7775421 013457788875 59999872 388999988 589999999999998864
No 46
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=1.1e-25 Score=249.57 Aligned_cols=314 Identities=14% Similarity=0.130 Sum_probs=227.2
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (818)
++++++|. +++| +|+ +|||+.++ +++| |. +|++.+|+.++++++++.. +..+..+...++.++|
T Consensus 29 ~~~~~~g~--~v~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNA--EIKV-GEK----EVLNFCAN---NYLGLAD-HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDI 97 (399)
T ss_dssp CBCSCSSS--EEEE-TTE----EEEECSSC---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHH
T ss_pred cccCCCCc--eEee-CCe----eEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHH
Confidence 45567776 6898 999 99999996 6789 68 9999999999998865432 1123467789999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++++. +..++++||++|++.+++.. .++.+.|.+...+|+.+..++...|...
T Consensus 98 a~~~~~---~~~i~~~sGt~a~~~~l~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~~- 151 (399)
T 3tqx_A 98 SEFLGT---DDTILYSSCFDANGGLFETL----------------------LGPEDAIISDELNHASIIDGIRLCKAQR- 151 (399)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHH----------------------CCTTCEEEEETTCCHHHHHHHHSCCSEE-
T ss_pred HHHHCC---CcEEEECchHHHHHHHHHHh----------------------cCCCCEEEECCcccHHHHHHHHHcCCce-
Confidence 999873 57888889999999999865 1123567777888887766665554321
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
+.+| ++|+ +.+++.+++..
T Consensus 152 -----------------------------~~~~--------------~~d~------------------~~l~~~l~~~~ 170 (399)
T 3tqx_A 152 -----------------------------YRYK--------------NNAM------------------GDLEAKLKEAD 170 (399)
T ss_dssp -----------------------------EEEC--------------TTCT------------------THHHHHHHHHH
T ss_pred -----------------------------eEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 0111 2222 23444454210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc-cCc-ccCCccchhcccCC--CCcEE--E
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t 686 (818)
..+.++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++ .|| ++.|+. ..+.+++ .||++ +
T Consensus 171 --~~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s 242 (399)
T 3tqx_A 171 --EKGARFKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGT 242 (399)
T ss_dssp --TTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEec
Confidence 11237899999997 899998886 999999999999999999999 464 666654 5567787 88998 8
Q ss_pred ecccccCCccccceeecchHHHhhccCChH---------------------HH-H-------------HHHHHHHHcCCC
Q 003466 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSK---------------------LW-D-------------LELIQQISSHRT 731 (818)
Q Consensus 687 lgKgLggGy~PlsAvl~~~~i~~~l~~~~~---------------------~~-~-------------~~l~~~l~~~~~ 731 (818)
++|.++ | +|.|.+++++++++.+..... .. . +.+.+.+++.+
T Consensus 243 ~sK~~~-g-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 319 (399)
T 3tqx_A 243 LGKALG-G-ASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG- 319 (399)
T ss_dssp SSSSSC-S-SCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred chHhcc-c-CceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-
Confidence 999999 5 588889999998876543110 11 0 11223333332
Q ss_pred eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 732 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 732 v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.-+...|.++.+.+... ..+..+++.|.++||++.+. + +.+|+.++..+|++|+++++++|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 320 FQLVPGNHPIIPVMLGDA--------QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp CCBCCCSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 222356788888877543 34678899999999999852 2 5899999999999999999999999
Q ss_pred HHHHH
Q 003466 804 RLEEF 808 (818)
Q Consensus 804 ~l~~l 808 (818)
+++++
T Consensus 392 ~~~~~ 396 (399)
T 3tqx_A 392 VGKKL 396 (399)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98765
No 47
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.93 E-value=5e-25 Score=245.15 Aligned_cols=315 Identities=14% Similarity=0.114 Sum_probs=222.8
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCC-CCCHHHHHHHHHhhhhcccccCC----CCCChhHHHHHHHH
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELL 452 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~hp~V~eAi~~q~~~~~~~~~~----~~~~~~~~eLae~L 452 (818)
++++++|. +++|.+|+ +|||+.++ +++|| . +|++.+|+.+++++++..... .+..+...+|.++|
T Consensus 30 ~~~~~~g~--~~~~~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 99 (401)
T 1fc4_A 30 IITSAQQA--DITVADGS----HVINFCAN---NYLGLAN-HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp CBCSCSSS--EEEBTTSC----EEEECCCS---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred eeccCCCc--eEEeeCCc----cEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHH
Confidence 56677776 79999999 99999996 46997 7 999999999999886642110 01256788999999
Q ss_pred HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCC
Q 003466 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (818)
Q Consensus 453 ~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~ 532 (818)
+++++. +..++++||++|++.|++.+. . +.+.|.+...+|+.+..++...|..
T Consensus 100 a~~~g~---~~~i~~~sGs~a~~~~~~~~~-----~-----------------~gd~v~~~~~~~~~~~~~~~~~g~~-- 152 (401)
T 1fc4_A 100 AAFLGM---EDAILYSSCFDANGGLFETLL-----G-----------------AEDAIISDALNHASIIDGVRLCKAK-- 152 (401)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHHC-----C-----------------TTCEEEEETTCCHHHHHHHHTSCSE--
T ss_pred HHHhCC---CcEEEeCChHHHHHHHHHHHc-----C-----------------CCCEEEEcchhHHHHHHHHHHcCCc--
Confidence 999874 477788999999999988761 1 2346667777888766554443321
Q ss_pred CCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 003466 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (818)
Q Consensus 533 ~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (818)
.+.+| ++|. +.+++.+++..
T Consensus 153 ----------------------------~~~~~--------------~~d~------------------~~l~~~l~~~~ 172 (401)
T 1fc4_A 153 ----------------------------RYRYA--------------NNDM------------------QELEARLKEAR 172 (401)
T ss_dssp ----------------------------EEEEC--------------TTCH------------------HHHHHHHHHHH
T ss_pred ----------------------------eEEEC--------------CCCH------------------HHHHHHHHHhh
Confidence 01111 1221 34555554200
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecc-cCc-ccCCccchhcccCCCC--cEE--E
Q 003466 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA--C 686 (818)
Q Consensus 613 ~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~-TGf-GRtG~~~a~e~~gv~P--Div--t 686 (818)
....++++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|| +++|+.+ .+.+++.| |++ +
T Consensus 173 --~~~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s 244 (401)
T 1fc4_A 173 --EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITGT 244 (401)
T ss_dssp --HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEec
Confidence 01116789999997 899998886 999999999999999999999 488 4677754 34566654 887 8
Q ss_pred ecccccCCccccceeecchHHHhhccCCh----------H-----------HH-------------HHHHHHHHHcCCCe
Q 003466 687 YGKLLTGGVIPLAATLATNAVFDSFVGDS----------K-----------LW-------------DLELIQQISSHRTV 732 (818)
Q Consensus 687 lgKgLggGy~PlsAvl~~~~i~~~l~~~~----------~-----------~~-------------~~~l~~~l~~~~~v 732 (818)
++|.++|+. .|++++++++++.+.... . .+ .+.+.+.+++++.
T Consensus 245 ~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~- 321 (401)
T 1fc4_A 245 LGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF- 321 (401)
T ss_dssp SSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 999998763 588889998887653211 0 01 0123344444432
Q ss_pred eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 733 QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 733 ~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.-+.+.|.++.+++... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|.++
T Consensus 322 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 322 TLAGADHAIIPVMLGDA--------VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp CBCCSSSSEEEEEEECH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEcCCh--------HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 11245788888887532 346678899999999998742 47999999999999999999999999
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++++
T Consensus 394 ~~~~ 397 (401)
T 1fc4_A 394 GKQL 397 (401)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8765
No 48
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.92 E-value=1e-23 Score=234.64 Aligned_cols=335 Identities=13% Similarity=0.110 Sum_probs=231.3
Q ss_pred HHHHHhhccchhhhcCccccccCCCCCCCCCCeEEEEeecCCeeEEEeCCcCccccceeecccccccccCCC-CCCHHHH
Q 003466 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELA 422 (818)
Q Consensus 344 ~~r~~~~~~l~~~~~~~~~~p~t~~~~~~~~~~~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh-~~hp~V~ 422 (818)
-++++.+..+.....+..|. .|.++++++|. +++ .+|+ +|||+.++. ++|| . +|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~--~~~-~~g~----~~idl~~~~---~~~~~~-~~~v~ 63 (398)
T 3a2b_A 6 GEKISQFKIVEELKAKGLYA-----------YFRPIQSKQDT--EVK-IDGR----RVLMFGSNS---YLGLTT-DTRII 63 (398)
T ss_dssp HHHHHTCCHHHHHHHTTCCC-----------SSCCBCSCSSS--EEE-ETTE----EEEECSCSC---TTCGGG-CHHHH
T ss_pred hhHHHHHHHHHHHHhcCccc-----------ceeeecCCCCc--eEE-ECCc----eEEEeeccc---ccCCCC-CHHHH
Confidence 34555555554444444442 13356677887 577 7899 999999863 3798 6 99999
Q ss_pred HHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 423 RDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 423 eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
+|+.+++++..+.. ...+..+...+++++|++..+. +.++++++|++|++.+++.+. .
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---~~v~~~~ggt~a~~~~~~~~~-----~---------- 125 (398)
T 3a2b_A 64 KAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK---EAAILFSTGFQSNLGPLSCLM-----G---------- 125 (398)
T ss_dssp HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHSS-----C----------
T ss_pred HHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----C----------
Confidence 99999998754211 1234567889999999998873 689999999999999999761 1
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~ 578 (818)
+.+.|.+...+|+.+..++...|... +.+|
T Consensus 126 -------~gd~V~~~~p~~~~~~~~~~~~g~~~------------------------------~~v~------------- 155 (398)
T 3a2b_A 126 -------RNDYILLDERDHASIIDGSRLSFSKV------------------------------IKYG------------- 155 (398)
T ss_dssp -------TTCEEEEETTCCHHHHHHHHHSSSEE------------------------------EEEC-------------
T ss_pred -------CCCEEEECCccCHHHHHHHHHcCCce------------------------------EEeC-------------
Confidence 23456677778887766655543220 1111
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEE
Q 003466 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (818)
Q Consensus 579 ~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI 658 (818)
++| .+.+++.+.+. ..+++++|+++++ ++..|.+.+ +++|.++|++||+++|
T Consensus 156 -~~d------------------~~~l~~~l~~~----~~~~~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li 207 (398)
T 3a2b_A 156 -HNN------------------MEDLRAKLSRL----PEDSAKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVM 207 (398)
T ss_dssp -TTC------------------HHHHHHHHHTS----CSSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEE
T ss_pred -CCC------------------HHHHHHHHHhh----ccCCceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEE
Confidence 122 15567777631 1126889999997 888888775 8999999999999999
Q ss_pred Eeeccc-C-cccCCccchhcccCCC--CcEE--EecccccCCccccceeecchHHHhhccCC-h-H--------------
Q 003466 659 FDEVFT-G-FWRLGVETTADLLGCV--PDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD-S-K-------------- 716 (818)
Q Consensus 659 ~DEV~T-G-fGRtG~~~a~e~~gv~--PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~-~-~-------------- 716 (818)
+||+++ | +|++|..+ .+.+++. +|++ +++|.++. +.|.+++++++++.+... . .
T Consensus 208 ~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 283 (398)
T 3a2b_A 208 VDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFSASMTPASVAST 283 (398)
T ss_dssp EECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHH
T ss_pred EECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHH
Confidence 999995 4 45655543 4556664 7888 99999982 115588898887765431 0 0
Q ss_pred --HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-
Q 003466 717 --LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL- 777 (818)
Q Consensus 717 --~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~- 777 (818)
.+ .+.+.+.+++.+ +.-+.+.|.++.+.+... ..+..+++.|+++||++.+.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~g~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~ 354 (398)
T 3a2b_A 284 LKALEIIQNEPEHIEKLWKNTDYAKAQLLDHG-FDLGATESPILPIFIRSN--------EKTFWVTKMLQDDGVFVNPVV 354 (398)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSCCSSEEEEECCCH--------HHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCCCCCEEEEEcCCH--------HHHHHHHHHHHHCCcEEEeeC
Confidence 00 012233444443 222345577877776421 34667899999999999874
Q ss_pred -------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 778 -------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 778 -------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.+|+.++..+|++++++++++|.++++++.
T Consensus 355 ~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 355 SPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp TTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 26899999998999999999999999987653
No 49
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.90 E-value=6.3e-23 Score=226.86 Aligned_cols=306 Identities=15% Similarity=0.107 Sum_probs=216.4
Q ss_pred EEEEeecCCeeEEEeCCcCccccceeecccccccccCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHH
Q 003466 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (818)
Q Consensus 377 ~vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lG-h~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (818)
.++.+++|. +++ .+|+ +|||+.++ .++| +. +|++.+|+.+++++++... +..+..+...+|.++
T Consensus 24 ~~~~~~~g~--~~~-~~g~----~~id~~~~---~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (384)
T 1bs0_A 24 YPVAQGAGR--WLV-ADDR----QYLNFSSN---DYLGLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEE 92 (384)
T ss_dssp CCCSBCSSS--EEE-ETTE----EEEECSCC---CTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHH
T ss_pred ccccCCCCc--eEE-ECCc----eEEEeecc---CccCCCC-CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHH
Confidence 356677887 566 6898 99999986 3489 57 9999999999998754311 112345788999999
Q ss_pred HHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 452 L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
|+++++ .+.+++++||++|++.+++.+ .++.+.|.++..+|+.+..++...|...
T Consensus 93 la~~~g---~~~~i~~~sGt~a~~~~~~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~~ 147 (384)
T 1bs0_A 93 LAEWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQL 147 (384)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSEE
T ss_pred HHHHhC---CCcEEEeCCcHHHHHHHHHHh----------------------CCCCcEEEEcccccHHHHHHHHHcCCCE
Confidence 999987 357889999999999999865 1123567788889998776665543220
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
+.+| ++| .+.+++.+.+
T Consensus 148 ------------------------------~~~~--------------~~d------------------~~~l~~~l~~- 164 (384)
T 1bs0_A 148 ------------------------------RRFA--------------HND------------------VTHLARLLAS- 164 (384)
T ss_dssp ------------------------------EEEC--------------TTC------------------HHHHHHHHHS-
T ss_pred ------------------------------EEeC--------------CCC------------------HHHHHHHHHh-
Confidence 1111 122 1456777763
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-Cc-ccCCccchhcccCCCCcEE--Ee
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--CY 687 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-Gf-GRtG~~~a~e~~gv~PDiv--tl 687 (818)
...+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ ++
T Consensus 165 ----~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~ 234 (384)
T 1bs0_A 165 ----PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTF 234 (384)
T ss_dssp ----CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEES
T ss_pred ----cCCCCeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeec
Confidence 2234689999987 899998886 8999999999999999999994 53 55666543 5677789998 99
Q ss_pred cccccCCccccceeecchHHHhhccCCh----------H-----------HHH----HH-----------HHHHHHcCCC
Q 003466 688 GKLLTGGVIPLAATLATNAVFDSFVGDS----------K-----------LWD----LE-----------LIQQISSHRT 731 (818)
Q Consensus 688 gKgLggGy~PlsAvl~~~~i~~~l~~~~----------~-----------~~~----~~-----------l~~~l~~~~~ 731 (818)
+|.++. |.|++++++++++.+.... . .+. ++ +.+.+++++
T Consensus 235 sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 310 (384)
T 1bs0_A 235 GKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP- 310 (384)
T ss_dssp SSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred cchhhc---cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999972 4577888988877543210 0 111 11 222333333
Q ss_pred eeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------CEEEEECCCCChHHHHHHHHHHHH
Q 003466 732 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------NVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+ .+. +.|.++.+.+... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|.
T Consensus 311 ~-~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 311 F-TLADSCSAIQPLIVGDN--------SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp C-EECSCCSSBCCEEEESH--------HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHH
T ss_pred C-cccCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 2 232 4566666666421 346678999999999998741 689999999899999999999987
Q ss_pred HH
Q 003466 803 QR 804 (818)
Q Consensus 803 ~~ 804 (818)
++
T Consensus 382 ~~ 383 (384)
T 1bs0_A 382 GN 383 (384)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 50
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.89 E-value=2e-22 Score=222.62 Aligned_cols=322 Identities=10% Similarity=0.018 Sum_probs=215.6
Q ss_pred EeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC
Q 003466 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (818)
Q Consensus 380 ~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (818)
.++.| +++||.+|+ +|||+..| . +..+. +|+|.+|+.+++++..+.. .....+...++++.+.+..+.+
T Consensus 14 ~~~~g--~~~~d~~g~----~~i~~~~~--~-~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~ 82 (391)
T 3dzz_A 14 KRQGN--SIKWGVLKE----KELPMWIA--E-MDFKI-APEIMASMEEKLKVAAFGY-ESVPAEYYKAVADWEEIEHRAR 82 (391)
T ss_dssp CCCTT--BTTTTTCCT----TCEECCSS--C-CSSCC-CHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCC--ccceeccCC----Cceecccc--C-CCCCC-CHHHHHHHHHHHhcCcCCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 34555 479999999 99999975 2 33346 9999999999998643211 1124566778888888765411
Q ss_pred -CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 460 -~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
..+.++|+++|++|++.+++.+. ..| .+|++...+||+....+. ..|...
T Consensus 83 ~~~~~i~~~~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~~~~~~~~~~~~-~~g~~~------- 133 (391)
T 3dzz_A 83 PKEDWCVFASGVVPAISAMVRQFT-----SPG----------------DQILVQEPVYNMFYSVIE-GNGRRV------- 133 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CTT----------------CEEEECSSCCHHHHHHHH-HTTCEE-------
T ss_pred CCHHHEEECCCHHHHHHHHHHHhC-----CCC----------------CeEEECCCCcHHHHHHHH-HcCCEE-------
Confidence 13689999999999999999761 222 378999999998543322 222110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
+.+|.... +-.| .| .+.+++.+.+
T Consensus 134 -----------------------~~~~~~~~-------~~~~~~d------------------~~~l~~~l~~------- 158 (391)
T 3dzz_A 134 -----------------------ISSDLIYE-------NSKYSVN------------------WADLEEKLAT------- 158 (391)
T ss_dssp -----------------------EECCCEEE-------TTEEECC------------------HHHHHHHHTS-------
T ss_pred -----------------------EEeeeeec-------CCceeec------------------HHHHHHHHhc-------
Confidence 01110000 0000 11 2567777752
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCC-CCc----EEEecccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLL 691 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv-~PD----ivtlgKgL 691 (818)
.++.+|+++.. ++..|.+. |+..+++|.++|++||+++|+||++++|++.|+ ......++. .|| +.+++|++
T Consensus 159 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~ 236 (391)
T 3dzz_A 159 PSVRMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF 236 (391)
T ss_dssp TTEEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH
T ss_pred cCceEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc
Confidence 35777777775 88888766 678899999999999999999999999988885 334444443 388 56799999
Q ss_pred c-CCccccceeecc-hHHHhhccCChH-----------------H-------H----------HHHHHHHHHc-CCCeeE
Q 003466 692 T-GGVIPLAATLAT-NAVFDSFVGDSK-----------------L-------W----------DLELIQQISS-HRTVQR 734 (818)
Q Consensus 692 g-gGy~PlsAvl~~-~~i~~~l~~~~~-----------------~-------~----------~~~l~~~l~~-~~~v~~ 734 (818)
| +| +++|+++++ +++++.+..... . + .+.+.+.+++ ++.+.-
T Consensus 237 g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 315 (391)
T 3dzz_A 237 NLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKV 315 (391)
T ss_dssp TCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 7 77 799999997 888775532110 0 0 1123344555 555544
Q ss_pred EEeeeeEE-EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 735 VVALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 735 vrg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+...|.++ .+.+.... ..+..+++.|+ ++||++.++ .+.+|+.++ +++++|++++++|.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 316 LDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred eccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 44444443 35554321 12567888896 899999973 278999887 68999999999999988
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 387 ~~~ 389 (391)
T 3dzz_A 387 LNL 389 (391)
T ss_dssp HTC
T ss_pred HHh
Confidence 654
No 51
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.87 E-value=6.9e-22 Score=217.44 Aligned_cols=313 Identities=12% Similarity=0.036 Sum_probs=205.7
Q ss_pred eecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC
Q 003466 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG 459 (818)
Q Consensus 381 ~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (818)
+++|. ++||.+|+ +||||.+|. ..++ . +|+|.+|+.+++++.. .+.. .+ .+...++++.+.+..+..
T Consensus 11 ~~~g~--~~~d~~g~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~ 78 (377)
T 3fdb_A 11 RARNT--MKWTRYGQ----GVLPLWVAE--SDFS-T-CPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQ 78 (377)
T ss_dssp HHTCC--HHHHSSCT----TSEECCSSC--CCSC-C-CHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCC
T ss_pred cCCCC--ceeeccCC----CeeeecccC--CCCC-C-CHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCC
Confidence 45554 79999999 999998863 3344 6 8999999999998632 2221 22 667777777777543311
Q ss_pred -CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 460 -~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
..+.++|+++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 79 ~~~~~i~~t~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~------- 129 (377)
T 3fdb_A 79 ARPEWIFPIPDVVRGLYIAIDHFT-----PAQ----------------SKVIVPTPAYPPFFHLLSA-TQREG------- 129 (377)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CTT----------------CCEEEEESCCTHHHHHHHH-HTCCE-------
T ss_pred CCHHHEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHhHHHHHHH-cCCEE-------
Confidence 13689999999999999999761 222 3689999999985533222 22110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~ 618 (818)
+.+|... + .| .+.+++.+.+ +
T Consensus 130 -----------------------~~~~~~~--------~---~d------------------~~~l~~~l~~-------~ 150 (377)
T 3fdb_A 130 -----------------------IFIDATG--------G---IN------------------LHDVEKGFQA-------G 150 (377)
T ss_dssp -----------------------EEEECTT--------S---CC------------------HHHHHHHHHT-------T
T ss_pred -----------------------EEccCCC--------C---CC------------------HHHHHHHhcc-------C
Confidence 0011000 0 01 2567777762 2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC-c----cchhcccCCCCcEEEeccccc-
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V----ETTADLLGCVPDIACYGKLLT- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG-~----~~a~e~~gv~PDivtlgKgLg- 692 (818)
..+.++..| ++..|.+. |.+.+++|.++|++||+++|+||++++|+++| . +.....++..+++.+++|++|
T Consensus 151 ~~~v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 227 (377)
T 3fdb_A 151 ARSILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNI 227 (377)
T ss_dssp CCEEEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTC
T ss_pred CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccC
Confidence 234455555 78888766 77889999999999999999999999998888 2 333333455567789999996
Q ss_pred CCccccceeec-chHHHhhccCChH----------------HH-----------------HHHHHHHHHc-CCCeeEEEe
Q 003466 693 GGVIPLAATLA-TNAVFDSFVGDSK----------------LW-----------------DLELIQQISS-HRTVQRVVA 737 (818)
Q Consensus 693 gGy~PlsAvl~-~~~i~~~l~~~~~----------------~~-----------------~~~l~~~l~~-~~~v~~vrg 737 (818)
+| +++|++++ ++++++.+..... .+ .+.+.+.+++ ++.+.-+..
T Consensus 228 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 306 (377)
T 3fdb_A 228 AG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM 306 (377)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC
T ss_pred cc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 67 79996655 7888776532211 00 0123344555 555544444
Q ss_pred eeeEE-EEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLC-AIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 738 ~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.|.++ .+++.... . ...++..|+++ ||++.++ .+.+|+.++. ++++|++++++|.+++++
T Consensus 307 ~~~~~~~~~~~~~~----~----~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 307 QATYLMWIDFRDTT----I----EGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp SBCSEEEEECTTSC----C----CSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEECcccC----C----CHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 45444 46664321 0 12356777766 9999873 3789999873 899999999999988754
No 52
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.87 E-value=3.9e-21 Score=211.60 Aligned_cols=320 Identities=11% Similarity=0.013 Sum_probs=206.0
Q ss_pred EEEeecCCeeEEEeCC-cCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc
Q 003466 378 VIDSRCGENFSVYQDQ-KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456 (818)
Q Consensus 378 vi~~~~G~~~~v~D~d-G~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~ 456 (818)
+..+++| +++||.. |+ ++||+.+|. ..+ +. +|+|.+|+.+++++..+. +.....+...++++.|++..
T Consensus 8 ~~~~~~g--~~~~d~~~~~----~~i~l~~~~--~~~-~~-~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~ 76 (383)
T 3kax_A 8 VNRRGTH--SIKWDTYKNE----ELIHAWIAD--MDF-EV-PQPIQTALKKRIEHPIFG-YTLPPENIGDIICNWTKKQY 76 (383)
T ss_dssp -------------CCCSSS----CCEECCCSS--CSS-CC-CHHHHHHHHHHHHSCCCC-CCCCCTTHHHHHHHHHHHHH
T ss_pred eeccCCC--ceeeeccCCC----Ceeeccccc--CCC-CC-CHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHh
Confidence 3445555 4799955 46 999999762 333 36 999999999999863221 11225778889999998876
Q ss_pred CCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCc
Q 003466 457 GKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (818)
Q Consensus 457 ~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~ 535 (818)
+.+ ..+.++|+++|++|++.+++.+. ..| .+|++...+||+....+. ..|...
T Consensus 77 g~~~~~~~v~~~~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~~~~~~~~~~~~-~~g~~~---- 130 (383)
T 3kax_A 77 NWDIQKEWIVFSAGIVPALSTSIQAFT-----KEN----------------ESVLVQPPIYPPFFEMVT-TNNRQL---- 130 (383)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHC-----CTT----------------CEEEECSSCCHHHHHHHH-HTTCEE----
T ss_pred CCCCChhhEEEcCCHHHHHHHHHHHhC-----CCC----------------CEEEEcCCCcHHHHHHHH-HcCCEE----
Confidence 511 13689999999999999999771 222 378999999998653322 222110
Q ss_pred CCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 003466 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (818)
Q Consensus 536 ~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (818)
+.+|.... +-.| .| .+.+++.+.
T Consensus 131 --------------------------~~~~~~~~-------~~~~~~d------------------~~~l~~~l~----- 154 (383)
T 3kax_A 131 --------------------------CVSPLQKQ-------NDTYAID------------------FEHLEKQFQ----- 154 (383)
T ss_dssp --------------------------EECCCEEE-------TTEEECC------------------HHHHHHHHT-----
T ss_pred --------------------------Eeccceec-------CCcEEEc------------------HHHHHHHhC-----
Confidence 01110000 0000 01 256677763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcc-----cCCCCcEEEec
Q 003466 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL-----LGCVPDIACYG 688 (818)
Q Consensus 615 ~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~-----~gv~PDivtlg 688 (818)
.++++|+++.. ++..|.+. |.+.+++|.++|++||+++|+||++++|+++|+.+. ... .+..+++.+++
T Consensus 155 ---~~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 229 (383)
T 3kax_A 155 ---QGVKLMLLCSP-HNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPS 229 (383)
T ss_dssp ---TTCCEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSH
T ss_pred ---cCCeEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEECh
Confidence 24556777665 78888766 788999999999999999999999999988886322 111 34556677899
Q ss_pred cccc-CCccccceeec-chHHHhhccCC---------hH---------------HH----------HHHHHHHHHc-CCC
Q 003466 689 KLLT-GGVIPLAATLA-TNAVFDSFVGD---------SK---------------LW----------DLELIQQISS-HRT 731 (818)
Q Consensus 689 KgLg-gGy~PlsAvl~-~~~i~~~l~~~---------~~---------------~~----------~~~l~~~l~~-~~~ 731 (818)
|.+| +| +++|++++ ++++++.+... .. .+ .+.+.+.+++ ++.
T Consensus 230 K~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 308 (383)
T 3kax_A 230 KTFNIAG-LQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHIPT 308 (383)
T ss_dssp HHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccCcc-hhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9998 78 79999988 67777654321 00 00 1123344554 565
Q ss_pred eeEEEeeeeEEE-EEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 732 VQRVVALGTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 732 v~~vrg~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+..+...|.++. +++.... ..+..+++.|+ ++||+++++ .+.+|+.+. .++++|++++++|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~ 379 (383)
T 3kax_A 309 LSVMKPEGSFLLWIDCSALN-------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLR 379 (383)
T ss_dssp CEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHH
T ss_pred ceEecCCceEEEEEEccccC-------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 555555565555 6664321 12557888898 689999872 278999877 58899999999998
Q ss_pred HHH
Q 003466 803 QRL 805 (818)
Q Consensus 803 ~~l 805 (818)
+++
T Consensus 380 ~~l 382 (383)
T 3kax_A 380 HTF 382 (383)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 53
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.86 E-value=4.8e-21 Score=213.19 Aligned_cols=300 Identities=12% Similarity=0.061 Sum_probs=196.3
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CCCCCChhHHHHHHHHHhccCCCCCCcEEEeC
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~ 468 (818)
||+ +|+|+.+ +.++|++.+|+|.+|+.+++++++... ......+...++.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 678 9999988 456777448999999999998865321 1112456788999999999874 4555568
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
||++|++.+++++.+. ..| ..|+ ....+|++...++...|...
T Consensus 114 sG~~a~~~~~~~l~~~---~~g----------------d~Vl-~~~~~~~~~~~~~~~~g~~~----------------- 156 (401)
T 2bwn_A 114 SAYNANDATLSTLRVL---FPG----------------LIIY-SDSLNHASMIEGIKRNAGPK----------------- 156 (401)
T ss_dssp CHHHHHHHHHHHHHHH---STT----------------CEEE-EETTCCHHHHHHHHHSCCCE-----------------
T ss_pred CcHHHHHHHHHHHhcC---CCC----------------CEEE-ECchhhHHHHHHHHHcCCeE-----------------
Confidence 9999999999875221 111 2444 45556665554443332210
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
+.+| ++| .+.+++.++. ...+++++|+++++
T Consensus 157 -------------~~v~--------------~~d------------------~~~le~~l~~----~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 157 -------------RIFR--------------HND------------------VAHLRELIAA----DDPAAPKLIAFESV 187 (401)
T ss_dssp -------------EEEC--------------TTC------------------HHHHHHHHHH----SCTTSCEEEEEESB
T ss_pred -------------EEEc--------------CCC------------------HHHHHHHHHh----hccCCceEEEEecC
Confidence 0111 122 1456666753 12246789999997
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-C-cccCCccchhcccCC--CCcEE--Eeccccc--CCccccce
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAA 700 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgKgLg--gGy~PlsA 700 (818)
++..|.+.+ +++|.++|++||+++|+||+|+ | ||++|..+. ..+++ .+|++ ++||+++ |||
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~GG~----- 256 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGGY----- 256 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCCEE-----
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCCCE-----
Confidence 899998886 8999999999999999999998 3 677887655 55565 34554 8999998 554
Q ss_pred eecchHHHhhccC---------Ch-H-----------HH---------------HHHHHHHHHcCCCeeEEEeeeeEEEE
Q 003466 701 TLATNAVFDSFVG---------DS-K-----------LW---------------DLELIQQISSHRTVQRVVALGTLCAI 744 (818)
Q Consensus 701 vl~~~~i~~~l~~---------~~-~-----------~~---------------~~~l~~~l~~~~~v~~vrg~Gl~~~i 744 (818)
+++++++++.+.. .. . .+ .+.+.+.+++.+. .-+...|.++.+
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~ 335 (401)
T 2bwn_A 257 IAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGM-PIIDHGSHIVPV 335 (401)
T ss_dssp EEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTC-CBCCCSSSCEEE
T ss_pred EecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCC-cccCCCCCeEEE
Confidence 7777776654321 00 0 00 0112233333321 111123446666
Q ss_pred EEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------C-CEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------G-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+... ..+..+++.|+ ++||++.+. + +.+|+.++..+|++|+++++++|+++++++
T Consensus 336 ~~~~~--------~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 336 VIGDP--------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp ECCCH--------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred EeCCh--------HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 66421 34567888886 789999863 2 589999999999999999999999887654
No 54
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.86 E-value=2.2e-21 Score=214.25 Aligned_cols=321 Identities=10% Similarity=0.025 Sum_probs=211.0
Q ss_pred cCCeeEEEeCCcCccc-cceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-C
Q 003466 383 CGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-W 460 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~~-~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~ 460 (818)
+|.++++||.+|+.+. +.+||+.++ .+..+. +|+|.+|+.+++++..+. +.....+...+++++|++..+.+ .
T Consensus 15 ~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~g~~~~ 89 (391)
T 4dq6_A 15 SNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKA-APCIIDSLKNRLEQEIYG-YTTRPDSYNESIVNWLYRRHNWKIK 89 (391)
T ss_dssp TTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCC-CHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCceeeeecccccCCCCceecccc---CCCCCC-CHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 3444579999987111 234898875 334456 899999999999864322 12234677888999998876511 1
Q ss_pred CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCc
Q 003466 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (818)
Q Consensus 461 l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~ 540 (818)
.+.++|+++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~--------- 138 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELT-----KAN----------------DKIMIQEPVYSPFNSVVKN-NNREL--------- 138 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHS-----CTT----------------CEEEECSSCCTHHHHHHHH-TTCEE---------
T ss_pred HHHeEEcCChHHHHHHHHHHhC-----CCC----------------CEEEEcCCCCHHHHHHHHH-cCCeE---------
Confidence 3689999999999999999771 222 3789999999986543322 22110
Q ss_pred ccCCCcccCCCcccccCcceeecCcch-hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~-~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
+.+|.. +. .++ |. -| .+.+++.+. .
T Consensus 139 ---------------------~~~~~~~~~----------~~~----~~--~d--------~~~l~~~l~-------~-- 164 (391)
T 4dq6_A 139 ---------------------IISPLQKLE----------NGN----YI--MD--------YEDIENKIK-------D-- 164 (391)
T ss_dssp ---------------------EECCCEECT----------TSC----EE--CC--------HHHHHHHCT-------T--
T ss_pred ---------------------EeeeeeecC----------CCc----eE--ee--------HHHHHHHhh-------c--
Confidence 011100 00 000 00 00 256666664 2
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hccc-----CCCCcEEEeccccc-
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLL-----GCVPDIACYGKLLT- 692 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~-----gv~PDivtlgKgLg- 692 (818)
+.+|+++.. ++..|.+. |+..+++|.++|++||+++|+||++++|++.|+... ...+ +....+.+++|++|
T Consensus 165 ~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 242 (391)
T 4dq6_A 165 VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNI 242 (391)
T ss_dssp EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTC
T ss_pred CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccC
Confidence 667777765 78888866 778899999999999999999999999988876322 2221 22244568999997
Q ss_pred CCccccceeecch-HHHhhccCCh---------H--------H-------H----------HHHHHHHHHc-CCCeeEEE
Q 003466 693 GGVIPLAATLATN-AVFDSFVGDS---------K--------L-------W----------DLELIQQISS-HRTVQRVV 736 (818)
Q Consensus 693 gGy~PlsAvl~~~-~i~~~l~~~~---------~--------~-------~----------~~~l~~~l~~-~~~v~~vr 736 (818)
+| +++|++++++ ++++.+.... . . + .+.+.+.+++ .+.+..+.
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 321 (391)
T 4dq6_A 243 AG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRK 321 (391)
T ss_dssp GG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred cc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecC
Confidence 67 7999999885 7766543210 0 0 0 1123344555 56665556
Q ss_pred eeeeEEE-EEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 737 ALGTLCA-IELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 737 g~Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..|.++. +++.... ..+..+++.|+++ ||+++++ .+.+|+.++ +++++|++++++|.+++
T Consensus 322 ~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 322 PEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 6666655 6665311 1256788999998 9999873 278999988 68999999999998876
No 55
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.86 E-value=4.3e-21 Score=213.30 Aligned_cols=332 Identities=13% Similarity=0.030 Sum_probs=209.3
Q ss_pred EEEeecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhc
Q 003466 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQG 455 (818)
Q Consensus 378 vi~~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~ 455 (818)
++....|.. + +.+|++...++|||.+|..+ ++..+|+|++|+.+++++... +....+..+...+++++|++.
T Consensus 21 ~~~~~~~~~--~-~~~~~~~~~~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~ 94 (407)
T 3nra_A 21 VRQSAAGLE--A-LIRGAPIEGRPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94 (407)
T ss_dssp ------CCT--T-TCCSCCCCSCCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhH--H-HhhcCCCCCceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 445555542 3 34555122249999986443 443389999999999986432 112234567888999999987
Q ss_pred cCCCC--CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCC
Q 003466 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (818)
Q Consensus 456 ~~~~~--l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~ 533 (818)
.+.+. .+.++|+++|++|++.+++.+. ..| ..|++...+||+.. .++...|....
T Consensus 95 ~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~~~~~~~~-~~~~~~g~~~~- 151 (407)
T 3nra_A 95 TGAPVDARDGLIITPGTQGALFLAVAATV-----ARG----------------DKVAIVQPDYFANR-KLVEFFEGEMV- 151 (407)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHTTC-----CTT----------------CEEEEEESCCTHHH-HHHHHTTCEEE-
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhC-----CCC----------------CEEEEcCCcccchH-HHHHHcCCEEE-
Confidence 76320 1589999999999999998651 112 36888888888744 22333322110
Q ss_pred CcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 003466 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (818)
Q Consensus 534 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (818)
.+|..+.. ..+. .+ ..| .+.+++.+.+
T Consensus 152 -----------------------------~~~~~~~~---------~~~~--~~--~~d--------~~~l~~~l~~--- 178 (407)
T 3nra_A 152 -----------------------------PVQLDYVS---------ADET--RA--GLD--------LTGLEEAFKA--- 178 (407)
T ss_dssp -----------------------------EEEBCCCS---------SCCS--SC--CBC--------HHHHHHHHHT---
T ss_pred -----------------------------Eeeccccc---------ccCc--CC--CcC--------HHHHHHHHhh---
Confidence 01100000 0000 00 001 2567777752
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcc-----cCCCCcEEEe
Q 003466 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL-----LGCVPDIACY 687 (818)
Q Consensus 614 ~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~-----~gv~PDivtl 687 (818)
++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++++|++.|+.+. ... ++...++.++
T Consensus 179 -----~~~~v~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~ 251 (407)
T 3nra_A 179 -----GARVFLFSNP-NNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 251 (407)
T ss_dssp -----TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECS
T ss_pred -----CCcEEEEcCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCc
Confidence 3445555544 78788766 888999999999999999999999999888876433 333 2333456689
Q ss_pred ccccc-CCccccceeecchHHHhhccCChH---------------------------------HHHHHHHHHHHcCCCee
Q 003466 688 GKLLT-GGVIPLAATLATNAVFDSFVGDSK---------------------------------LWDLELIQQISSHRTVQ 733 (818)
Q Consensus 688 gKgLg-gGy~PlsAvl~~~~i~~~l~~~~~---------------------------------~~~~~l~~~l~~~~~v~ 733 (818)
+|.+| .| +++|++++++++++.+..... ...+.+.+.+++++.+.
T Consensus 252 sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 330 (407)
T 3nra_A 252 SKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVF 330 (407)
T ss_dssp SSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCB
T ss_pred ccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 99998 77 799999999998776532111 01123445566665554
Q ss_pred EEEeee-eEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 734 RVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 734 ~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+...| .++.+.+.... ..+..+++.|++ +||++.++ .+.+|++++. ++++|++++++|.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 331 ARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVTL 401 (407)
T ss_dssp CCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred eccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 444444 55555554311 125567888875 59999873 3789999884 899999999999999
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++++
T Consensus 402 ~~~~ 405 (407)
T 3nra_A 402 VERY 405 (407)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 56
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.85 E-value=1.7e-20 Score=208.31 Aligned_cols=325 Identities=9% Similarity=-0.013 Sum_probs=207.9
Q ss_pred CCeeEEEeCCcCccc---cceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-
Q 003466 384 GENFSVYQDQKNKFI---GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG- 459 (818)
Q Consensus 384 G~~~~v~D~dG~~~~---~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~- 459 (818)
|.++++||.+|+.+. +++||+.++. ..++ . +|+|.+|+.++++.... .+.....+...++++.+.+..+.+
T Consensus 13 ~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-~y~~~~~~l~~~la~~l~~~~g~~~ 87 (399)
T 1c7n_A 13 NLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-N-PPELIEGLKKYLDETVL-GYTGPTEEYKKTVKKWMKDRHQWDI 87 (399)
T ss_dssp TTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-C-CHHHHHHHHHHHHHCCC-SSBCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCccccccchhhccccCCCceeeeecC--CCCC-C-CHHHHHHHHHHHhcCCC-CCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 444579999985332 2789997754 3344 4 89999999999875211 111113345555555555444411
Q ss_pred CCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCC
Q 003466 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (818)
Q Consensus 460 ~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p 539 (818)
..+.++++++|++|++.+++.+. ..| .+|++...+||+....+.. .|...
T Consensus 88 ~~~~v~~t~g~~~a~~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~-~g~~~-------- 137 (399)
T 1c7n_A 88 QTDWIINTAGVVPAVFNAVREFT-----KPG----------------DGVIIITPVYYPFFMAIKN-QERKI-------- 137 (399)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEECSSCCTHHHHHHHT-TTCEE--------
T ss_pred ChhhEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHhHHHHHHH-cCCEE--------
Confidence 13689999999999999999761 122 3799999999996543322 22110
Q ss_pred cccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 003466 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (818)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~ 618 (818)
+.+|.... +-.| .| .+.+++.+.+ .
T Consensus 138 ----------------------~~~~~~~~-------~g~~~~d------------------~~~l~~~l~~-------~ 163 (399)
T 1c7n_A 138 ----------------------IECELLEK-------DGYYTID------------------FQKLEKLSKD-------K 163 (399)
T ss_dssp ----------------------EECCCEEE-------TTEEECC------------------HHHHHHHHTC-------T
T ss_pred ----------------------EecccccC-------CCCEEEc------------------HHHHHHHhcc-------C
Confidence 00110000 0000 11 2567777752 3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc-----cCCCCcEEEeccccc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL-----LGCVPDIACYGKLLT 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~-----~gv~PDivtlgKgLg 692 (818)
++++|++... ++..|.+. |++++++|.++|++||+++|+||++++|++.|.. ..... .+...++.+++|.+|
T Consensus 164 ~~~~v~~~~~-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 164 NNKALLFCSP-HNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp TEEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred CCcEEEEcCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 5677777654 78788765 7899999999999999999999999999887752 22222 233345668999998
Q ss_pred -CCccccceeecc-hHHHhhccC--------C-hH--------HH-----------------HHHHHHHHHc-CCCeeEE
Q 003466 693 -GGVIPLAATLAT-NAVFDSFVG--------D-SK--------LW-----------------DLELIQQISS-HRTVQRV 735 (818)
Q Consensus 693 -gGy~PlsAvl~~-~~i~~~l~~--------~-~~--------~~-----------------~~~l~~~l~~-~~~v~~v 735 (818)
+| +++|+++++ +++++.+.. . .. .+ .+.+.+.+++ ++.+..+
T Consensus 242 ~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 320 (399)
T 1c7n_A 242 IAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (399)
T ss_dssp CGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred ccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 78 799999997 567765421 1 11 11 0123344555 5555545
Q ss_pred EeeeeEE-EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 736 VALGTLC-AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 736 rg~Gl~~-~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.|.++ .+++.... ..+..+++.|+ ++||++.++ .+.+|+.++.. +++|++++++|.++++
T Consensus 321 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 321 LIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNKALK 391 (399)
T ss_dssp CCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHHHHH
Confidence 5555554 46664310 01456888897 789999873 36899999864 7899999999999987
Q ss_pred HHH
Q 003466 807 EFD 809 (818)
Q Consensus 807 ~l~ 809 (818)
++.
T Consensus 392 ~~~ 394 (399)
T 1c7n_A 392 DLK 394 (399)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 57
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.85 E-value=1.7e-20 Score=192.82 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=157.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCC------CchHHHHHhccCCccccCCCcccc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD------SDSRFLFTKLPSLSLRRNFPSSLI 111 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~------~d~~~~~~~~~~~~~~~~~~~~~~ 111 (818)
+.|+|+++.+|+||||+|+.|+.+|. ++|+||.++||++++.... .|..++.... +
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~-~------------ 63 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-S------------ 63 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-S------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCCCcChHHHHHHHHHh-C------------
Confidence 57999999999999999999999994 7899999999988764321 1212111110 0
Q ss_pred cccchhhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCC
Q 003466 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (818)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (818)
... .....+++.+..|.+|++++..+ +..
T Consensus 64 -------------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T 1byi_A 64 -------------------LQL-------------------------------DYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp -------------------SCC-------------------------------CHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred -------------------CCC-------------------------------ChhhcccEEeCCCCCHHHHHHHc-CCC
Confidence 000 00113456777889999987766 666
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
...+.+.+.++++.++ ||+|||||+||+.+|......++++++.++.|||+|+....++++++..++
T Consensus 93 ~~~~~l~~~l~~l~~~-------------yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i 159 (224)
T 1byi_A 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHH
Confidence 7788888888887655 999999999999999766688999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCCEEe-cCCCC-CCCcchhhhhhh
Q 003466 272 ESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLP-QDSSNDLMEWFD 326 (818)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-iP~~~-~~~~~~~~~~l~ 326 (818)
+.++..++++.|+|+|++... ..+.+++.+ ++|+++ ||+.+ .....++.++++
T Consensus 160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~--~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHc--CCCEEEECCCCcCCccHHHHHHHhc
Confidence 999988999999999998432 123444545 899999 99988 433335666664
No 58
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.84 E-value=5.3e-20 Score=204.98 Aligned_cols=314 Identities=15% Similarity=0.094 Sum_probs=202.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-C--CCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-F--PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~--~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e 475 (818)
++|||.+|... ..||. +|+|.+|+.+++++..... + ..+..+...++++.+.+..+.+ ..+.++|+++|++|++
T Consensus 35 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 35 KLISLAAGDPD-PELIP-RAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALD 112 (407)
T ss_dssp CCEECCSCCCC-TTTSC-HHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHH
T ss_pred ceEeCCCCCCC-chhCC-HHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHH
Confidence 89999987754 45888 9999999999998743111 1 1122344455555554433411 1368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++.+.+||+.... +...|..
T Consensus 113 ~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~-~~~~g~~------------------------- 145 (407)
T 2zc0_A 113 LLGRVLI-----DPG----------------DVVITENPSYINTLLA-FEQLGAK------------------------- 145 (407)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCHHHHHH-HHTTTCE-------------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEeCCChHHHHHH-HHHcCCE-------------------------
Confidence 9999871 122 3799999999985432 2222211
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+.+|... + ..| .+.+++.+.... ....++++|++.|..++..|.
T Consensus 146 -----~~~v~~~~--------~--~~d------------------~~~l~~~l~~~~--~~~~~~~~v~~~~~~~nptG~ 190 (407)
T 2zc0_A 146 -----IEGVPVDN--------D--GMR------------------VDLLEEKIKELK--AKGQKVKLIYTIPTGQNPMGV 190 (407)
T ss_dssp -----EEEEEEET--------T--EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred -----EEEcccCC--------C--CCC------------------HHHHHHHHHhhh--cccCCceEEEECCCCCCCCCc
Confidence 00111000 0 011 145666664100 012367787544434788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccC---CCCcEEEecccccCCccccceeecchHHHhhc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG---CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~g---v~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|+. .....++ ...++.+++|.++.| +++|++++++++++.+
T Consensus 191 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 191 TM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKV 268 (407)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHH
Confidence 65 7899999999999999999999999998777763 2233333 234567899999988 7999999999887755
Q ss_pred cCC--------hH--------HH-----H-H--------------HHHHHHHc-CCCeeEE-EeeeeEEEEEEecCcccC
Q 003466 712 VGD--------SK--------LW-----D-L--------------ELIQQISS-HRTVQRV-VALGTLCAIELQAAGCNA 753 (818)
Q Consensus 712 ~~~--------~~--------~~-----~-~--------------~l~~~l~~-~~~v~~v-rg~Gl~~~iel~~~~~~~ 753 (818)
... .. .+ . + .+.+.+++ .+.+.-+ ...|.++.+.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---- 344 (407)
T 2zc0_A 269 LMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEG---- 344 (407)
T ss_dssp HHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT----
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC----
Confidence 321 00 11 1 1 12233443 3433222 23566777777432
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+..+++.|.++ ||++.++ .+.+|+.++.. |++||++++++|.++++++
T Consensus 345 ----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 345 ----ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp ----CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1245688899988 9999862 36899999876 8999999999999998765
No 59
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.84 E-value=1.4e-19 Score=203.41 Aligned_cols=319 Identities=11% Similarity=0.023 Sum_probs=201.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA 473 (818)
.+||+.+|.. .+| . +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+ .++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-A-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC-C-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6899988754 466 5 8999999999997632 11111123455566666665544421 136 89999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++.+. ..| .+|++.+.+||+....+ ...|....
T Consensus 114 ~~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~-~~~g~~~~--------------------- 150 (429)
T 1yiz_A 114 LYATIQGHV-----DEG----------------DEVIIIEPFFDCYEPMV-KAAGGIPR--------------------- 150 (429)
T ss_dssp HHHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHH-HHTTCEEE---------------------
T ss_pred HHHHHHHhc-----CCC----------------CEEEEcCCCchhHHHHH-HHcCCEEE---------------------
Confidence 999999871 122 37999999999965332 22222110
Q ss_pred cccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
.++....-. ........| .| .+.+++.+. .++++|++++. ++.
T Consensus 151 -------~~~~~~~~~--~~~~~~~~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~np 194 (429)
T 1yiz_A 151 -------FIPLKPNKT--GGTISSADWVLD------------------NNELEALFN--------EKTKMIIINTP-HNP 194 (429)
T ss_dssp -------EEECBCCCS--SSSEEGGGCBCC------------------HHHHHHHCC--------TTEEEEEEESS-CTT
T ss_pred -------EEeCCcccc--cccccccCcccC------------------HHHHHHHhc--------cCceEEEECCC-CCC
Confidence 000000000 000000000 11 255666653 36788998886 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhc-ccCCCCcEEEeccccc-CCccccceeecchH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~ 706 (818)
.|.+. |++++++|.++|++||+++|+||++++|++.|.. .... .++..+++.+++|.+| +| +++|+++++++
T Consensus 195 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~ 272 (429)
T 1yiz_A 195 LGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEA 272 (429)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHH
T ss_pred CCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHH
Confidence 88776 7899999999999999999999999999887752 1221 3456667889999998 78 79999999999
Q ss_pred HHhhccCChH----------------HHHH------------------------HHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 707 VFDSFVGDSK----------------LWDL------------------------ELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 707 i~~~l~~~~~----------------~~~~------------------------~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
+++.+..... .+.. .+.+.+++++........|+++.+++
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~ 352 (429)
T 1yiz_A 273 LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADW 352 (429)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEEC
T ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEc
Confidence 8875532100 1111 12233444433211222477888887
Q ss_pred ecCcccCC----CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAG----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 747 ~~~~~~~~----~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
........ ........+++.|+ ++||++.++ ++.+|+.++ .++++|++++++|.+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 353 SSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp CSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 54210000 00013456788786 799999863 468999998 48999999999998875
No 60
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.84 E-value=2.3e-19 Score=198.85 Aligned_cols=323 Identities=10% Similarity=0.053 Sum_probs=195.6
Q ss_pred cCCeeEEEeCCcCcc-ccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-hHHHHHHHHHhccC--C
Q 003466 383 CGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG--K 458 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~-~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~-~~~eLae~L~~~~~--~ 458 (818)
+|.++++||.+|+.+ .++||||.++. ..+| . +|+|.+|+.++++.... .+.....+ ...++++.+.+..+ .
T Consensus 11 ~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-~y~~~~~~~lr~~la~~l~~~~g~~~ 85 (390)
T 1d2f_A 11 HGTWCTQWDYVADRFGTADLLPFTISD--MDFA-T-APCIIEALNQRLMHGVF-GYSRWKNDEFLAAIAHWFSTQHYTAI 85 (390)
T ss_dssp -------------------CEECCSSS--CSSC-C-CHHHHHHHHHHHTTCCC-CCCCSCCHHHHHHHHHHHHHHSCCCC
T ss_pred cCCCccchhhhccccCCCCeeEeeecC--CCCC-C-CHHHHHHHHHHHhCCCC-CCCCCChHHHHHHHHHHHHHhcCCCC
Confidence 445568999999622 12689997653 3466 5 89999999999875211 11112445 66677777765443 1
Q ss_pred CCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCC
Q 003466 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (818)
Q Consensus 459 ~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~ 538 (818)
. .+.++++++|++|++.+++.+. ..| .+|++.+.+||+....+.. .|...
T Consensus 86 ~-~~~v~~t~g~~~al~~~~~~l~-----~~g----------------d~vl~~~p~y~~~~~~~~~-~g~~~------- 135 (390)
T 1d2f_A 86 D-SQTVVYGPSVIYMVSELIRQWS-----ETG----------------EGVVIHTPAYDAFYKAIEG-NQRTV------- 135 (390)
T ss_dssp C-GGGEEEESCHHHHHHHHHHHSS-----CTT----------------CEEEEEESCCHHHHHHHHH-TTCEE-------
T ss_pred C-HHHEEEcCCHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHHHHHHHHH-CCCEE-------
Confidence 1 3689999999999999999761 122 4799999999986543322 22110
Q ss_pred CcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003466 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (818)
Q Consensus 539 p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (818)
..++.... +-.| .| .+.+++.+..
T Consensus 136 ---------------------~~v~~~~~---------~~~~~~d------------------~~~l~~~l~~------- 160 (390)
T 1d2f_A 136 ---------------------MPVALEKQ---------ADGWFCD------------------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEECEEC---------SSSEECC------------------HHHHHHHHTS-------
T ss_pred ---------------------EEeecccC---------CCccccC------------------HHHHHHHhcc-------
Confidence 00111000 0000 11 2567777752
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC---c-EEEeccccc-
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP---D-IACYGKLLT- 692 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P---D-ivtlgKgLg- 692 (818)
.++++|++... ++..|.+. |.+++++|.++|++||+++|+||++++|++.|+.+.. ...+.+ | +.+++|.+|
T Consensus 161 ~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhhccCccHhhcc
Confidence 25677776543 77788775 6789999999999999999999999999887764321 122323 3 889999998
Q ss_pred CCccccceeecc-hHHHhhccC---------C-hH--------HHH-----------------HHHHHHHHc-CCCeeEE
Q 003466 693 GGVIPLAATLAT-NAVFDSFVG---------D-SK--------LWD-----------------LELIQQISS-HRTVQRV 735 (818)
Q Consensus 693 gGy~PlsAvl~~-~~i~~~l~~---------~-~~--------~~~-----------------~~l~~~l~~-~~~v~~v 735 (818)
+| +++|+++++ +++++.+.. . .. .+. +.+.+.+++ ++.+..+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 316 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ 316 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe
Confidence 78 699999985 676553311 1 11 010 123344555 5555444
Q ss_pred Eeeee-EEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 736 VALGT-LCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 736 rg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
++.|. ++.+++.... ..+..+++.|. ++||++.++ .+.+|+.++. ++++|++++++|.++++
T Consensus 317 ~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 317 IPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp CCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 55554 4456664310 01456888898 689999873 3689999986 47899999999999886
Q ss_pred HH
Q 003466 807 EF 808 (818)
Q Consensus 807 ~l 808 (818)
++
T Consensus 388 ~~ 389 (390)
T 1d2f_A 388 AV 389 (390)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 61
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.84 E-value=2.8e-19 Score=195.47 Aligned_cols=294 Identities=12% Similarity=0.099 Sum_probs=198.3
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
.+|+ ++|||.++. +.++ . +|+|.+|+.++++.+... ..+...++.++|+++++.. .+.++|+++|+
T Consensus 23 ~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~-~~~i~~~~g~t 88 (361)
T 3ftb_A 23 FKGR----ELLDYSSNI--NPLG-I-PKSFLNNIDEGIKNLGVY-----PDVNYRRLNKSIENYLKLK-DIGIVLGNGAS 88 (361)
T ss_dssp ---------CEETTCCC--CTTC-S-CHHHHTTHHHHHHGGGSC-----CCTTCHHHHHHHHHHHTCC-SCEEEEESSHH
T ss_pred cCCC----CEEEecCCC--CCCC-C-CHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHhCCC-cceEEEcCCHH
Confidence 4888 999999864 3455 4 899999999999875332 2234467888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++.+ .+||+...+||+....+... |...
T Consensus 89 ~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~-g~~~-------------------- 122 (361)
T 3ftb_A 89 EIIELSISLF-------------------------EKILIIVPSYAEYEINAKKH-GVSV-------------------- 122 (361)
T ss_dssp HHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHT-TCEE--------------------
T ss_pred HHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHc-CCeE--------------------
Confidence 9999998854 27899999999855332222 2110
Q ss_pred cccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++.... +. + . .+.+++.+. . +.+|+++.. ++
T Consensus 123 --------~~~~~~~~-------------~~----~-------~-----~~~l~~~l~-------~--~~~v~i~~p-~n 155 (361)
T 3ftb_A 123 --------VFSYLDEN-------------MC----I-------D-----YEDIISKID-------D--VDSVIIGNP-NN 155 (361)
T ss_dssp --------EEEECCTT-------------SC----C-------C-----HHHHHHHTT-------T--CSEEEEETT-BT
T ss_pred --------EEeecCcc-------------cC----C-------C-----HHHHHHhcc-------C--CCEEEEeCC-CC
Confidence 00111000 00 0 0 145666664 2 345555443 67
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE---Eeccccc-CCccccceee-cchH
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATL-ATNA 706 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgKgLg-gGy~PlsAvl-~~~~ 706 (818)
..|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.+| +| +++|+++ ++++
T Consensus 156 ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~g~~~~~~~~ 233 (361)
T 3ftb_A 156 PNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRFGYGITNNKE 233 (361)
T ss_dssp TTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCCEEEEESCHH
T ss_pred CCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cceeEEEeCCHH
Confidence 777766 78889999999999999999999999887753233334444444443 7899998 77 7999988 8999
Q ss_pred HHhhccCChH------------------------------HHHHHHHHHHHcCCCee-EEEeeeeEEEEEEecCcccCCC
Q 003466 707 VFDSFVGDSK------------------------------LWDLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 707 i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~-~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
+++.+..... ...+.+.+.+++++.+. .+.+.|.++.+.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------ 307 (361)
T 3ftb_A 234 IAAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLENI------ 307 (361)
T ss_dssp HHHHHHTTSCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSEEEEEESSS------
T ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeEEEEEcCCC------
Confidence 8887643211 01123445566777776 6778888888877541
Q ss_pred chHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 756 ~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+++.|.++||++.++ .+.+|+.++ +++++++++++|++..+
T Consensus 308 ---~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 ---SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp ---CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 1457889999999999973 378999976 78888898888877654
No 62
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.83 E-value=7.1e-20 Score=203.67 Aligned_cols=308 Identities=16% Similarity=0.147 Sum_probs=203.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCC-ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~-~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~AL 478 (818)
++|||.+|..+ ..||. +|++.+|+.+++++.+.... .+. .....+|.++|+++++.. .+.++++++|++|++.++
T Consensus 33 ~~i~l~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPA-PELFP-KEEAAEAAARILREKGEVAL-QYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCC-GGGCC-HHHHHHHHHHHHHHHHHHHT-SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCC-chhCC-HHHHHHHHHHHHHhcchhhh-CCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 79999987764 45888 99999999999886431110 111 123456777777766522 368999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.+. ..| .+|++...+||+....+.. .|..
T Consensus 109 ~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~-~g~~---------------------------- 138 (397)
T 2zyj_A 109 KVFL-----DEG----------------SPVLLEAPSYMGAIQAFRL-QGPR---------------------------- 138 (397)
T ss_dssp HHHC-----CTT----------------CEEEEEESCCHHHHHHHHT-TCCE----------------------------
T ss_pred HHhC-----CCC----------------CEEEEeCCCcHHHHHHHHH-cCCE----------------------------
Confidence 9761 222 3789999999986533222 1111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.+.+|... + ..| .+.+++.+.+ .++++|++-|-.++..|.+.
T Consensus 139 --~~~~~~~~--------~--~~d------------------~~~l~~~l~~-------~~~~~v~~~~~~~nptG~~~- 180 (397)
T 2zyj_A 139 --FLTVPAGE--------E--GPD------------------LDALEEVLKR-------ERPRFLYLIPSFQNPTGGLT- 180 (397)
T ss_dssp --EEEEEEET--------T--EEC------------------HHHHHHHHHH-------CCCSCEEECCBSCTTTCCBC-
T ss_pred --EEecCcCC--------C--CCC------------------HHHHHHHHhh-------cCCeEEEECCCCcCCCCCcC-
Confidence 00111000 0 011 2566777752 24556643332377778765
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCC------CCcEEEecccccCCccccceeecchHHHhhc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC------VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv------~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
|.+++++|.++|++||+++|+||++++|++.|.. .....++. ...+.+++|.+++| +++|++++++++++.+
T Consensus 181 ~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l 259 (397)
T 2zyj_A 181 PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQKL 259 (397)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHHH
Confidence 7899999999999999999999999999887763 22233322 23356899999988 7999999999887755
Q ss_pred cCCh--------H-------------HH---H----------HHHHHHHHc-CC-CeeEEE-eeeeEEEEEEecCcccCC
Q 003466 712 VGDS--------K-------------LW---D----------LELIQQISS-HR-TVQRVV-ALGTLCAIELQAAGCNAG 754 (818)
Q Consensus 712 ~~~~--------~-------------~~---~----------~~l~~~l~~-~~-~v~~vr-g~Gl~~~iel~~~~~~~~ 754 (818)
.... . .+ . +.+.+.+++ .+ .+..+. ..|.++.+++...
T Consensus 260 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~----- 334 (397)
T 2zyj_A 260 VQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKG----- 334 (397)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTT-----
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCC-----
Confidence 3211 0 00 0 112233443 34 243322 4567777777532
Q ss_pred CchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|.++||++.++ .+.+|+.++.. ++++|++++++|.++++++.
T Consensus 335 ---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 335 ---LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp ---CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999872 37899999874 89999999999999987764
No 63
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.83 E-value=1.3e-19 Score=204.48 Aligned_cols=328 Identities=11% Similarity=0.029 Sum_probs=202.3
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc--------CCCCC-ChhHHHHHHHHHhccC--
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--------FPENV-YEPALECAELLLQGVG-- 457 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~--------~~~~~-~~~~~eLae~L~~~~~-- 457 (818)
.||.++| .+.++..|...+.++ ++.+.+++.++.....+.. ...+. .....+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 4778888 776666666565555 7889999988876543210 00011 1112455555555443
Q ss_pred ------CCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCC
Q 003466 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (818)
Q Consensus 458 ------~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~ 531 (818)
-. .+.++|+++|++|++.+++.+. ..| ..|++.+.+||+........+|...
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLA-----DPG----------------EAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhc-----CCC----------------CeEEECCCccccHHHHHHHhcCCEE
Confidence 11 3689999999999999999871 222 3688888887765432221232211
Q ss_pred CCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 003466 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (818)
Q Consensus 532 ~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (818)
. .++....- + |. -| .+.+++.+++.
T Consensus 161 ~----------------------------~~~~~~~~--------~--~~---------~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 161 V----------------------------PIHCTSSN--------G--FQ---------IT--------ETALEEAYQEA 185 (435)
T ss_dssp E----------------------------EEECCGGG--------T--SC---------CC--------HHHHHHHHHHH
T ss_pred E----------------------------EeeCCCcc--------C--Cc---------CC--------HHHHHHHHHHH
Confidence 0 01100000 0 00 01 14455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccC----CC-----
Q 003466 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG----CV----- 681 (818)
Q Consensus 612 ~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g----v~----- 681 (818)
. ....++++|++++. ++..|.+. +.+.+++|.++|++||++||+||+++++++.|+.+.. ..++ +.
T Consensus 186 ~--~~~~~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 E--KRNLRVKGVLVTNP-SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp H--HTTCCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred H--hcCCCeEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 0 12346888888876 78888755 6788999999999999999999999998788765432 2221 21
Q ss_pred Cc----EEEeccccc-CCccccceeec-chHHHhhccCC------hH--------------HHH--------------HH
Q 003466 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSFVGD------SK--------------LWD--------------LE 721 (818)
Q Consensus 682 PD----ivtlgKgLg-gGy~PlsAvl~-~~~i~~~l~~~------~~--------------~~~--------------~~ 721 (818)
+| +.+++|++| +| +++|++++ ++++.+.+... .. .+. +.
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKK 340 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 55 668999998 78 79999999 56666544211 10 000 11
Q ss_pred HHHHHHcCCCeeEEEeee-eEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHH
Q 003466 722 LIQQISSHRTVQRVVALG-TLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPE 792 (818)
Q Consensus 722 l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~e 792 (818)
+.+.+++.+ +..+.+.| +++.+++.... .......+..+++.|+++ ||++.+. .+.+|+.++.. |++
T Consensus 341 l~~~L~~~g-~~~~~~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e 416 (435)
T 3piu_A 341 LVSGLQKSG-ISCLNGNAGLFCWVDMRHLL--RSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PER 416 (435)
T ss_dssp HHHHHHTTT-CEECCCCSSSEEEEECGGGS--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHH
T ss_pred HHHHHHhcC-CcccCCCeeEEEEEEccccc--ccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHH
Confidence 233344443 33344444 78888875431 111112456788888877 9999872 37899998765 999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 793 dId~~~~~l~~~l~~l~ 809 (818)
+|++++++|.++++++.
T Consensus 417 ~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 417 TLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987754
No 64
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.83 E-value=1.1e-19 Score=200.35 Aligned_cols=300 Identities=11% Similarity=0.018 Sum_probs=194.8
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hhHHHHHHHHHhcc----CCC-CCC-cEE
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAY 465 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~-~~~~eLae~L~~~~----~~~-~l~-~v~ 465 (818)
+|+ ++|||.+|.. .+| . +|+|.+|+.+++++.... .+.. ....+|.+.|++++ |.+ ..+ .++
T Consensus 23 ~g~----~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~ 91 (376)
T 2dou_A 23 RGV----GLIDLSIGST--DLP-P-PEAPLKALAEALNDPTTY---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREAL 91 (376)
T ss_dssp TTC----CCEECSSCCC--CCC-C-CHHHHHHHHHHTTCGGGS---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEE
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHHHHHHhCCCcC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEE
Confidence 466 8999988754 566 4 799999999998753111 1222 23456666666654 532 113 899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~ 545 (818)
|+++|++|++.+++.+ ...| .+|++.+.+||+....+.. .|...
T Consensus 92 ~~~g~~~a~~~~~~~l-----~~~g----------------d~vl~~~p~y~~~~~~~~~-~g~~~-------------- 135 (376)
T 2dou_A 92 ALIGSQEGLAHLLLAL-----TEPE----------------DLLLLPEVAYPSYFGAARV-ASLRT-------------- 135 (376)
T ss_dssp EESSHHHHHHHHHHHH-----CCTT----------------CEEEEESSCCHHHHHHHHH-TTCEE--------------
T ss_pred EcCCcHHHHHHHHHHh-----cCCC----------------CEEEECCCCcHhHHHHHHH-cCCEE--------------
Confidence 9999999999999876 1122 3799999999996543322 22110
Q ss_pred cccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003466 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (818)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv 625 (818)
..++.++.+ ..|+ +.+++.+. .++++|++
T Consensus 136 --------------~~~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~l 164 (376)
T 2dou_A 136 --------------FLIPLREDG-----------LADL------------------KAVPEGVW--------REAKVLLL 164 (376)
T ss_dssp --------------EEECBCTTS-----------SBCG------------------GGSCHHHH--------HHEEEEEE
T ss_pred --------------EEeeCCCCC-----------CCCH------------------HHHHHhhc--------cCceEEEE
Confidence 011111111 0111 22333443 24678887
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcc---cCCCCcEEEeccccc-CCccccce
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~---~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
+.. ++..|.+. |.+++++|.++|++||+++|+||++++|.+.|+.. .... ++...++.+++|.+| +| +++|+
T Consensus 165 ~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~ 241 (376)
T 2dou_A 165 NYP-NNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGF 241 (376)
T ss_dssp CSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEE
T ss_pred CCC-CCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEE
Confidence 754 77778765 78999999999999999999999999987776432 2222 334455668999997 77 79999
Q ss_pred eecchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEe-eeeEEEEEE
Q 003466 701 TLATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVA-LGTLCAIEL 746 (818)
Q Consensus 701 vl~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg-~Gl~~~iel 746 (818)
+++++++++.+.... . .+ .+.+.+.++++ +..+.. .|+++.+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~ 319 (376)
T 2dou_A 242 ALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRL 319 (376)
T ss_dssp EEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEEC
T ss_pred EecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEEC
Confidence 999999887653211 0 00 01123334444 322233 356666776
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
... ..+..+++.|+++||++.++ .+.+|+.++. ++++|++++++|.+++
T Consensus 320 ~~~--------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 320 PEG--------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp CTT--------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred CCC--------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 432 11456888999999999873 3789999874 7899999999998764
No 65
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.83 E-value=4.5e-19 Score=194.69 Aligned_cols=296 Identities=12% Similarity=0.051 Sum_probs=205.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.++. +.++ . +|+|.+|+.++++..... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPYR-L-PPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCCC-C-CHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCCC-C-CHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 789998864 3343 5 899999999998853221 12234467888999988864113689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+ -+.| .+|++.+.+||+....+.. .|...
T Consensus 104 ~~-----~~~g----------------d~Vl~~~~~~~~~~~~~~~-~g~~~---------------------------- 133 (367)
T 3euc_A 104 AA-----ARPG----------------AKVMAPVPGFVMYAMSAQF-AGLEF---------------------------- 133 (367)
T ss_dssp HT-----CCTT----------------CEEEEEESCSCCSCHHHHT-TTCEE----------------------------
T ss_pred HH-----cCCC----------------CEEEEcCCCHHHHHHHHHH-cCCeE----------------------------
Confidence 76 1222 3789999999986533222 11110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++....+ ..| .+.+++.+.. .++++|+++.. ++..|.+. +
T Consensus 134 ~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF-----------TLD------------------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 011111000 011 2566777752 14567888775 88888876 7
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCChH-
Q 003466 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK- 716 (818)
Q Consensus 640 ~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~- 716 (818)
.+.+++|.++|++| |+++|+||++++|+..+.......++...++.+++|...+| +++|++++++++++.+.....
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~~~~~ 254 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDKVRPP 254 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGGGCCS
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHHhCCC
Confidence 78899999999999 99999999999987666555555566667788999995567 799999999998876643211
Q ss_pred -----------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHH
Q 003466 717 -----------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL 767 (818)
Q Consensus 717 -----------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l 767 (818)
...+.+.+.+++++.+......|.++.+.+. + +..+.+.|
T Consensus 255 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~----------~~~l~~~l 323 (367)
T 3euc_A 255 YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARVP-D----------AAQTFDRL 323 (367)
T ss_dssp SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEECS-C----------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEECC-C----------HHHHHHHH
Confidence 0112344556667666555566777777664 2 45678889
Q ss_pred HhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 768 REDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 768 ~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.++||++++. .+.+|+... |++|+++++++|++++
T Consensus 324 ~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 324 LARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp HTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 9999999873 378999965 8999999999998875
No 66
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.82 E-value=1.3e-19 Score=199.15 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=195.6
Q ss_pred eCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCCh
Q 003466 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470 (818)
Q Consensus 391 D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SG 470 (818)
+.+|+ ++|||.++. ..+| . +|++.+|+.+++++...+. .+...++.++|+++++.+ .+.++|+++|
T Consensus 20 ~~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~l~~~la~~~~~~-~~~v~~~~g~ 85 (364)
T 1lc5_A 20 GISPD----QLLDFSANI--NPLG-M-PVSVKRALIDNLDCIERYP-----DADYFHLHQALARHHQVP-ASWILAGNGE 85 (364)
T ss_dssp TSCGG----GSEECSSCC--CTTC-C-CHHHHHHHHHTGGGGGSCC-----CTTCHHHHHHHHHHHTSC-GGGEEEESSH
T ss_pred CCCcc----ceEEecccc--CCCC-C-CHHHHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHCcC-HHHEEECCCH
Confidence 45788 999998876 3477 6 8999999999987633221 223467888888877632 3689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+ . | .+|++...+||+....+... |...
T Consensus 86 ~~al~~~~~~~----~---g----------------d~vl~~~p~y~~~~~~~~~~-g~~~------------------- 122 (364)
T 1lc5_A 86 TESIFTVASGL----K---P----------------RRAMIVTPGFAEYGRALAQS-GCEI------------------- 122 (364)
T ss_dssp HHHHHHHHHHH----C---C----------------SEEEEEESCCTHHHHHHHHT-TCEE-------------------
T ss_pred HHHHHHHHHHc----C---C----------------CeEEEeCCCcHHHHHHHHHc-CCeE-------------------
Confidence 99999999875 1 1 37999999999965433222 2110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVV 629 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAV-IvEPV~ 629 (818)
..++.... ++ +.. .+.+.+.+. .++++| +.+|
T Consensus 123 ---------~~v~~~~~-------------~~----~~~-----------l~~~~~~~~--------~~~~~v~i~~p-- 155 (364)
T 1lc5_A 123 ---------RRWSLREA-------------DG----WQL-----------TDAILEALT--------PDLDCLFLCTP-- 155 (364)
T ss_dssp ---------EEEECCGG-------------GT----TCC-----------CTTHHHHCC--------TTCCEEEEESS--
T ss_pred ---------EEEeCCcc-------------cc----cch-----------hHHHHHhcc--------CCCCEEEEeCC--
Confidence 00111000 00 000 011111221 234444 4566
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hcccCCCCcEEEeccccc-CCccccceee-cch
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLAATL-ATN 705 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivtlgKgLg-gGy~PlsAvl-~~~ 705 (818)
++..|.+. |.+++++|.++|++||+++|+||++++|++.|.... .+.++....+.+++|.+| +| +++|+++ +++
T Consensus 156 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~ 233 (364)
T 1lc5_A 156 NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSDD 233 (364)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCCH
T ss_pred CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECCH
Confidence 56677764 889999999999999999999999998866543221 122344444568999998 78 7999999 999
Q ss_pred HHHhhccCC--h----H--------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCC
Q 003466 706 AVFDSFVGD--S----K--------------LW----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 706 ~i~~~l~~~--~----~--------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~ 755 (818)
++++.+... . . .+ .+.+.+.+++++.+..+...|.++.+++..+
T Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~------ 307 (364)
T 1lc5_A 234 AAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCERE------ 307 (364)
T ss_dssp HHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCT------
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEEECCCc------
Confidence 987755321 0 0 00 1224455666666655566788877776432
Q ss_pred chHHHHHHHHHHHhCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLREDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 756 ~~~~a~~~~~~l~e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+++.|.++||++.+. .+.+|+... +++|+++++++|++.++++.
T Consensus 308 ----~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 308 ----DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp ----TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 224778899999999873 368999853 58899999999998876653
No 67
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.71 E-value=7.9e-22 Score=219.31 Aligned_cols=322 Identities=11% Similarity=0.071 Sum_probs=201.0
Q ss_pred cCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CC
Q 003466 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (818)
Q Consensus 383 ~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l 461 (818)
+|.++++||.+|+ .+++|||.+|.. .++ . +|+|.+|+.+++++..+.. .....+...++++++.+..+.+ ..
T Consensus 17 ~~~g~~~~d~~g~--~~~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 17 LSHHTYKWKETET--DPQLLPAWIADM--DFE-V-MPEVKQAIHDYAEQLVYGY-TYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 3455689999986 448999977542 344 3 7999999999987532211 1113445555555555543310 13
Q ss_pred CcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcc
Q 003466 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (818)
Q Consensus 462 ~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~ 541 (818)
+.++++++|++|++.+++.+. ..| .+|++...+||+....+... |...
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~---------- 137 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFT-----KEG----------------EAVLINSPVYPPFARSVRLN-NRKL---------- 137 (392)
Confidence 689999999999999999772 111 37899999999866433222 1110
Q ss_pred cCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 003466 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (818)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iA 621 (818)
+.+| +++.+..|. . ..+.+++.+. ..+++
T Consensus 138 --------------------~~~~--------------~~~~~g~~~-------~---d~~~l~~~l~-------~~~~~ 166 (392)
T 3b1d_A 138 --------------------VSNS--------------LKEENGLFQ-------I---DFEQLENDIV-------ENDVK 166 (392)
Confidence 0011 000000000 0 0144555553 13456
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc----cchhcc--cCCCCcEEEeccccc-CC
Q 003466 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 622 AVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~----~~a~e~--~gv~PDivtlgKgLg-gG 694 (818)
+|+++.. ++..|.+. +.+++++|.++|++||+++|+||++++|++.|. ++.... ++..+++.+++|++| +|
T Consensus 167 ~v~~~~~-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 244 (392)
T 3b1d_A 167 LYLLCNP-HNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG 244 (392)
Confidence 7777664 77788764 778999999999999999999999999988774 233322 456677889999998 78
Q ss_pred ccccceeecch-HHHhhccCChH-----------------HHH-----------------HHHHHHHHc-CCCeeEEEee
Q 003466 695 VIPLAATLATN-AVFDSFVGDSK-----------------LWD-----------------LELIQQISS-HRTVQRVVAL 738 (818)
Q Consensus 695 y~PlsAvl~~~-~i~~~l~~~~~-----------------~~~-----------------~~l~~~l~~-~~~v~~vrg~ 738 (818)
+++|++++++ ++++.+..... .+. +.+.+.+++ ++.+..++..
T Consensus 245 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 245 -TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 7999999875 47765532110 111 011222333 3344445555
Q ss_pred eeEEE-EEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 739 GTLCA-IELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 739 Gl~~~-iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
|.++. +++.... ..+..+++.|+ ++||++.|+ .+.+|+... .++++|++++++|.++++
T Consensus 324 ~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 324 GTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 65554 5553210 12456788887 789999873 256787754 468999999999988764
No 68
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.82 E-value=7.7e-19 Score=191.65 Aligned_cols=303 Identities=9% Similarity=0.024 Sum_probs=205.8
Q ss_pred EEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEe
Q 003466 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (818)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~ 467 (818)
++++.+|+ ++||+.++. +.++ . +|+|.+|+.++++.... +..+...+|.++|+++++.. .+.++++
T Consensus 9 ~~~~~~~~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~i~~~ 74 (354)
T 3ly1_A 9 AFTAPSTD----NPIRINFNE--NPLG-M-SPKAQAAARDAVVKANR-----YAKNEILMLGNKLAAHHQVE-APSILLT 74 (354)
T ss_dssp CCCCCCSS----SCEECSSCC--CSSC-C-CHHHHHHHHHTGGGTTS-----CCHHHHHHHHHHHHHHTTSC-GGGEEEE
T ss_pred cccCCCCC----ceEEccCCC--CCCC-C-CHHHHHHHHHHHhhCcC-----CCCCchHHHHHHHHHHhCCC-hHHEEEe
Confidence 46778899 999999864 3444 5 89999999999885322 23456789999999988743 3689999
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~ 547 (818)
++|++|++.+++.. .+.| .+|++...+||+....+. ..|...
T Consensus 75 ~g~~~a~~~~~~~l-----~~~g----------------d~vl~~~~~~~~~~~~~~-~~g~~~---------------- 116 (354)
T 3ly1_A 75 AGSSEGIRAAIEAY-----ASLE----------------AQLVIPELTYGDGEHFAK-IAGMKV---------------- 116 (354)
T ss_dssp SHHHHHHHHHHHHH-----CCTT----------------CEEEEESSSCTHHHHHHH-HTTCEE----------------
T ss_pred CChHHHHHHHHHHH-----hCCC----------------CeEEECCCCchHHHHHHH-HcCCEE----------------
Confidence 99999999999976 1222 378888888887543222 222110
Q ss_pred cCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 548 ~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++....+ -.| .+.+++.+.+ ..++.+|+++.
T Consensus 117 ------------~~~~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~l~~ 149 (354)
T 3ly1_A 117 ------------TKVKMLDNW-----------AFD------------------IEGLKAAVAA------YSGPSIVYLVN 149 (354)
T ss_dssp ------------EEECCCTTS-----------CCC------------------HHHHHHHHHT------CSSCEEEEEES
T ss_pred ------------EEecCCCCC-----------CCC------------------HHHHHHHhcc------CCCCCEEEEeC
Confidence 011111000 001 2567777752 13567777776
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch----hccc-CCCCcEEEeccccc-CCcccccee
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADLL-GCVPDIACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a----~e~~-gv~PDivtlgKgLg-gGy~PlsAv 701 (818)
. ++..|.+. |.+.+++|.++| +||+++|+||++++|+..|.... ...+ +....+.+++|.+| .| +++|++
T Consensus 150 p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~ 225 (354)
T 3ly1_A 150 P-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRVGYA 225 (354)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEE
T ss_pred C-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhheee
Confidence 5 78788777 667788888888 79999999999999887775321 1222 44445568999998 77 799999
Q ss_pred ecchHHHhhccCChH------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 702 LATNAVFDSFVGDSK------------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 702 l~~~~i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
++++++++.+..... ...+.+.+.+++++ +..+.+.|.++.+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-- 302 (354)
T 3ly1_A 226 VAHPTVIALMGRYVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK-LPYLPSEGNFVFHQLVVP-- 302 (354)
T ss_dssp ECCHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCCSSEEEEECSSC--
T ss_pred ecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCCCceEEEEECCCC--
Confidence 999998887653211 01112334444442 333456777777776532
Q ss_pred cCCCchHHHHHHHHHHHhCCceEe----ecCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMR----PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~----p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+.+.|.++||++. ...+.+|++.. +++|+++++++|++++++
T Consensus 303 --------~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 303 --------LKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp --------HHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 4568889999999987 12478999864 789999999999988753
No 69
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.81 E-value=3.1e-19 Score=200.84 Aligned_cols=316 Identities=12% Similarity=0.076 Sum_probs=202.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccC---CCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~---~~~l~~v~f~~SGse 472 (818)
.+|||.+|..+ ..||. +|+|.+|+.+++++.. .+....+..+...++++.+.+..+ .. .+.++++++|++
T Consensus 44 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPD-PETFP-RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCC-GGGSC-HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCC-cccCC-HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 79999988764 45888 9999999999987632 111111234555666666654324 22 368999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++.. ...| .+|++.+.+||+....+.. .|..
T Consensus 121 al~~~~~~l-----~~~g----------------d~Vl~~~p~y~~~~~~~~~-~g~~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLF-----LDDE----------------SYCVLDDPAYLGAINAFRQ-YLAN---------------------- 156 (425)
T ss_dssp HHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHHHT-TTCE----------------------
T ss_pred HHHHHHHHh-----CCCC----------------CEEEEeCCCcHHHHHHHHH-cCCE----------------------
Confidence 999999976 1222 3799999999986533222 2211
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
.+.+|... + ..| .+.+++.+.+.....++.++++|++.|..++.
T Consensus 157 --------~~~v~~~~--------~--~~d------------------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 --------FVVVPLED--------D--GMD------------------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp --------EEEEEEET--------T--EEC------------------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred --------EEEeccCC--------C--CCC------------------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 00111000 0 011 14455555420000012367887544433777
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCC---CcEEEecccccCCccccceeecchHHH
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PDIACYGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~---PDivtlgKgLggGy~PlsAvl~~~~i~ 708 (818)
.|.+. |.+++++|.++|++||+++|+||++++|.+.|+. .....++.. ..+.+++|.+++| +++|+++++++++
T Consensus 201 tG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 78765 7899999999999999999999999998777763 223223222 2355899999988 7999999999988
Q ss_pred hhccCChH----------------HHH-------------------HHHHHHHHcC-C---CeeEE-EeeeeEEEEEEec
Q 003466 709 DSFVGDSK----------------LWD-------------------LELIQQISSH-R---TVQRV-VALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~~~~~----------------~~~-------------------~~l~~~l~~~-~---~v~~v-rg~Gl~~~iel~~ 748 (818)
+.+..... .+. +.+.+.++++ + .+..+ ...|.++.+++..
T Consensus 279 ~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~ 358 (425)
T 1vp4_A 279 RKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE 358 (425)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCC
Confidence 76532110 110 1123334432 3 23322 3457777777753
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.. .+..+++.|+++||++.++ .+.+|+.++.. +++++++++++|.++++++.
T Consensus 359 ~~--------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 359 GF--------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp TC--------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CC--------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 20 1235788899899999872 36899999874 89999999999999987764
No 70
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.81 E-value=1.3e-18 Score=198.02 Aligned_cols=314 Identities=11% Similarity=0.095 Sum_probs=205.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc----cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~----~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e 475 (818)
.+|||.+|.... -++. ++++.+|+.+++++.+ .+....+..+....+++.+.+..+.+..+.++++++|++|++
T Consensus 77 ~~i~l~~g~p~~-~~~p-~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~ 154 (448)
T 3aow_A 77 DIISLAGGLPNP-KTFP-KEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD 154 (448)
T ss_dssp SSEECCCCCCCG-GGSC-HHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred CcEeCCCCCCCc-hhCC-HHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence 789999887654 3577 8999999999987642 111112233445555555544335311368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.++++.. ..| ..|++.+.+|||..... ...|..
T Consensus 155 ~~~~~l~-----~~G----------------d~Vlv~~p~y~~~~~~~-~~~g~~------------------------- 187 (448)
T 3aow_A 155 LIGRVFL-----NPG----------------DIVVVEAPTYLAALQAF-NFYEPQ------------------------- 187 (448)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HTTCCE-------------------------
T ss_pred HHHHHHc-----CCC----------------CEEEEeCCChHHHHHHH-HHcCCE-------------------------
Confidence 9999861 222 37999999999855332 222211
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+.+|... + -.| .+.|++.+.... ....++++|++.|..++..|.
T Consensus 188 -----~~~v~~~~--------~--g~d------------------~~~L~~~l~~~~--~~~~~~k~v~~~~~~~NPtG~ 232 (448)
T 3aow_A 188 -----YIQIPLDD--------E--GMK------------------VEILEEKLKELK--SQGKKVKVVYTVPTFQNPAGV 232 (448)
T ss_dssp -----EEEEEEET--------T--EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred -----EEEeccCC--------C--CCC------------------HHHHHHHHhhhh--ccCCCCeEEEECCCCCCCcCC
Confidence 01111000 0 011 245666664100 012367888777765777787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhcccCCCCcEEEecccccCCccccceeecchHHHhhc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l 711 (818)
+. +.+++++|.++|++||+++|+||++++|...|+. ...+..+...++.+|||.++.| +++|++++++++++.+
T Consensus 233 ~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l 310 (448)
T 3aow_A 233 TM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKM 310 (448)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHHH
Confidence 65 8899999999999999999999999988766652 2333345556788999999988 7999999999988765
Q ss_pred cCChH----------------HHH-------------------HHHHHHHHc-CC-CeeEEEe-eeeEEEEEEecCcccC
Q 003466 712 VGDSK----------------LWD-------------------LELIQQISS-HR-TVQRVVA-LGTLCAIELQAAGCNA 753 (818)
Q Consensus 712 ~~~~~----------------~~~-------------------~~l~~~l~~-~~-~v~~vrg-~Gl~~~iel~~~~~~~ 753 (818)
..... .+. +.+.+.+++ .+ .+..++. .|+++.+.+...
T Consensus 311 ~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~---- 386 (448)
T 3aow_A 311 EIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDG---- 386 (448)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTT----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCC----
Confidence 32110 110 112333443 34 3443333 366677776432
Q ss_pred CCchHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+..+++.|+++||++.|+ .+.+|++++. .++++|++++++|.++++++
T Consensus 387 ----~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 387 ----IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp ----CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999873 3689999886 48999999999999998765
No 71
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.81 E-value=1.2e-18 Score=193.05 Aligned_cols=312 Identities=8% Similarity=0.005 Sum_probs=203.2
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC--CCC-cEE
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-RAY 465 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~--~l~-~v~ 465 (818)
++|.+|+ ++||+.+|. ..++ . +|.|.+|+.++++....+....+..+...++++.|.+..+.. ..+ .++
T Consensus 24 ~~~~~g~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~ 95 (396)
T 3jtx_A 24 ISAPEGM----EAVPLHIGE--PKHP-T-PKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL 95 (396)
T ss_dssp CCCCTTC----CCEECSCCS--CCSC-C-CHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE
T ss_pred hhhccCC----CeEEeCCcC--CCCC-C-CHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE
Confidence 5678899 999999876 3344 4 899999999998765443333345677888888887765421 135 899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~ 545 (818)
++++|++|++.+++.+. ..|. ..++..|++...+||+....+.. .|...
T Consensus 96 ~t~g~~~al~~~~~~~~-----~~g~-----------~~~~d~vl~~~p~~~~~~~~~~~-~g~~~-------------- 144 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVL-----NPVS-----------DGIKPAIVSPNPFYQIYEGATLL-GGGEI-------------- 144 (396)
T ss_dssp EESSHHHHHHHHHHHHC-----CC--------------CCCCEEEEEESCCHHHHHHHHH-TTCEE--------------
T ss_pred EcCCcHHHHHHHHHHHh-----CCCC-----------ccCCCEEEEcCCCcHhHHHHHHH-cCCEE--------------
Confidence 99999999999999871 1110 00125799999999986543222 22110
Q ss_pred cccCCCcccccCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 546 LFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
..++.+ +.+ ..|+ +.+++.+. .++.+|+
T Consensus 145 --------------~~v~~~~~g~-----------~~d~------------------~~l~~~~~--------~~~~~v~ 173 (396)
T 3jtx_A 145 --------------HFANCPAPSF-----------NPDW------------------RSISEEVW--------KRTKLVF 173 (396)
T ss_dssp --------------EEEECCTTTC-----------CCCG------------------GGSCHHHH--------HTEEEEE
T ss_pred --------------EEeecCCCCC-----------ccCH------------------HHHHHhhc--------cCcEEEE
Confidence 011110 000 0011 23444453 1466777
Q ss_pred EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC-ccchhc--------ccCCCCcEEEeccccc-CC
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTAD--------LLGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG-~~~a~e--------~~gv~PDivtlgKgLg-gG 694 (818)
++.. ++..|.+. |.+.+++|.++|++||+++|+||++++|.+.| ...... .++..+++.++||+++ .|
T Consensus 174 l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 174 VCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 6654 78888866 67779999999999999999999999998888 333322 1456677889999876 56
Q ss_pred ccccceeecchHHHhhccCChH----------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEE
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW----------------DLELIQQISSHRTVQRVVALGTLC 742 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~ 742 (818)
+++|++++++++++.+..... .+ .+.+.+.++.+..+... ..|.++
T Consensus 252 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~ 329 (396)
T 3jtx_A 252 -LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLP-DASFYI 329 (396)
T ss_dssp -GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCC-SSSSEE
T ss_pred -cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC-CeeEEE
Confidence 799999999998876642110 00 01123334333112212 236677
Q ss_pred EEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 743 AIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 743 ~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+++... .+..+++.|+ ++||++.|+ .+.+|+.+.. ++++|++++++|.+++
T Consensus 330 ~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 330 WLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp EEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 7776531 1456777886 569999872 2789998765 8999999999998764
No 72
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.81 E-value=1.4e-18 Score=192.13 Aligned_cols=310 Identities=11% Similarity=0.027 Sum_probs=201.2
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCCh
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SG 470 (818)
+|+ ++||+.+|.. .+| . +|++.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++++++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN-T-PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 567 8999988754 455 4 8999999999986521 11111223455666666666543311 13689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 100 ~~a~~~~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~-~~~~g~~~------------------- 138 (388)
T 1j32_A 100 KQSIFNLMLAMI-----EPG----------------DEVIIPAPFWVSYPEM-VKLAEGTP------------------- 138 (388)
T ss_dssp HHHHHHHHHHHC-----CTT----------------CEEEEESSCCTHHHHH-HHHTTCEE-------------------
T ss_pred HHHHHHHHHHhc-----CCC----------------CEEEEcCCCChhHHHH-HHHcCCEE-------------------
Confidence 999999999761 122 3799999999985432 22222110
Q ss_pred CcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++..... .| .| .+.+++.+. .++++|++++.
T Consensus 139 ---------~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p- 172 (388)
T 1j32_A 139 ---------VILPTTVET----------QFKVS------------------PEQIRQAIT--------PKTKLLVFNTP- 172 (388)
T ss_dssp ---------EEECCCGGG----------TTCCC------------------HHHHHHHCC--------TTEEEEEEESS-
T ss_pred ---------EEecCCccc----------CCCCC------------------HHHHHHhcC--------cCceEEEEeCC-
Confidence 011111000 00 01 255666664 25788888886
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc----chhc--ccCCCCcEEEeccccc-CCccccceee
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD--LLGCVPDIACYGKLLT-GGVIPLAATL 702 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~----~a~e--~~gv~PDivtlgKgLg-gGy~PlsAvl 702 (818)
++..|.+. |++.+++|.++|++||+++|+||++++|.+.|.. +... .++..+++.+++|.+| .| +++|+++
T Consensus 173 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~ 250 (388)
T 1j32_A 173 SNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLA 250 (388)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEE
T ss_pred CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEE
Confidence 78888775 7899999999999999999999999998776642 2222 1456677889999998 67 7999999
Q ss_pred cchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEEEec
Q 003466 703 ATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIELQA 748 (818)
Q Consensus 703 ~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~ 748 (818)
+++++++.+.... . .+ .+.+.+.+++++.+.-+... |.++.+.+..
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~ 330 (388)
T 1j32_A 251 GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK 330 (388)
T ss_dssp CCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGG
T ss_pred eCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCC
Confidence 9998876553210 0 00 11234455555443323333 3333333321
Q ss_pred CcccCCCchHHHHHHHHHHHh-CCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLRE-DGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.. ..+..+++.|++ +||++.++ .+.+|+.++ +++++|++++++|.++++++
T Consensus 331 ~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 331 TG-------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp GT-------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CC-------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 00 124568888886 79999874 378999986 68999999999999988654
No 73
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.81 E-value=1.2e-18 Score=191.03 Aligned_cols=290 Identities=10% Similarity=0.026 Sum_probs=196.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.++ . +|+|.+|+.++++.+... ..+...++.++|+++++.. .+.++|+++|++|++.+++
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNE--NPLG-T-SKKVAAIQANSSVETEIY-----PDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCS--CTTC-C-CHHHHHHHHTCBSCCCBC---------CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCC--CCCC-C-CHHHHHHHHHHHHHhhcC-----CCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 799998853 3455 4 899999999988754332 2334467888888877632 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| .+|++.+.+||+....+.. .|...
T Consensus 103 ~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~-~g~~~---------------------------- 132 (363)
T 3ffh_A 103 VLL-----DTT----------------TNTVMATPTFVQYRQNALI-EGAEV---------------------------- 132 (363)
T ss_dssp HHC-----STT----------------CEEEEEESSCHHHHHHHHH-HTCEE----------------------------
T ss_pred HHc-----cCC----------------CEEEEcCCChHHHHHHHHH-cCCEE----------------------------
Confidence 761 122 3789999999874433222 22110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++.+..+ ..| .+.+++.+. .++++|+++.. ++..|.+. |
T Consensus 133 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG-----------EHD------------------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CcC------------------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 011111000 001 255666663 35778888876 88888876 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc----EEEeccccc-CCccccceeecchHHHhhccCC
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~ 714 (818)
.+.+.++.+.|++ |+++|+||++++|++ |++.........+| +.+++|.+| .| +++|++++++++++.+...
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~ 250 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIV 250 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHHh
Confidence 6666666666666 999999999999887 76554444433455 568999998 77 7999999999998765432
Q ss_pred hH--------------H----------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 SK--------------L----------------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ~~--------------~----------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. . ..+.+.+.+++++.+..+...|.++.+.+..+ +..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~ 320 (363)
T 3ffh_A 251 RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLIDLGIE----------AGTIF 320 (363)
T ss_dssp CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEEECSSC----------HHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEEECCCC----------HHHHH
Confidence 11 0 11223445566455555567788877776432 45688
Q ss_pred HHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 765 ~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.|.++||+++++ ++.+|+.++ |++|+++++++|+++
T Consensus 321 ~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 321 SYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 8999999999983 378999976 899999999999875
No 74
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.81 E-value=6.5e-19 Score=197.07 Aligned_cols=315 Identities=10% Similarity=0.033 Sum_probs=194.3
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhccCCC-CC-CcEEEe
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFS 467 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~ 467 (818)
.+|+ ++|||.+|.. .+| . +|.|.+|+.+++++.....+ ..+..+....+++.+.+..+.+ .. +.++++
T Consensus 34 ~~g~----~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP-T-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC-C-CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCC----CEEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 3577 8999998763 566 6 89999999999876421111 1123344455555554433521 12 489999
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~ 547 (818)
++|++|++.+++.+ ...| .+|++.+.+||+....+.. .|...
T Consensus 106 ~g~~~a~~~~~~~~-----~~~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~~---------------- 147 (412)
T 2x5d_A 106 IGSKEGLAHLMLAT-----LDHG----------------DTILVPNPSYPIHIYGAVI-AGAQV---------------- 147 (412)
T ss_dssp SCHHHHHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHHHH-HTCEE----------------
T ss_pred CChHHHHHHHHHHh-----CCCC----------------CEEEEcCCCchhHHHHHHH-cCCEE----------------
Confidence 99999999999976 1222 3799999999986543322 22110
Q ss_pred cCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 548 ~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
+.+| +++ + .... ...+.+++.+. .++++|++..
T Consensus 148 --------------~~~~--------------~~~---------~-~~~~-~d~~~l~~~i~--------~~~~~v~l~~ 180 (412)
T 2x5d_A 148 --------------RSVP--------------LVP---------G-IDFF-NELERAIRESI--------PKPRMMILGF 180 (412)
T ss_dssp --------------EEEE--------------CST---------T-SCHH-HHHHHHHHTEE--------SCCSEEEEES
T ss_pred --------------EEee--------------cCC---------c-cCCC-CCHHHHHHhcc--------cCceEEEECC
Confidence 0011 000 0 0000 00245665553 2445566643
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCcccccee
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsAv 701 (818)
. ++..|.+. |.+++++|.++|++||+++|+||++++|.+.|+. ..... ++....+.+++|.+| +| +++|++
T Consensus 181 p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~ 257 (412)
T 2x5d_A 181 P-SNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRIGFM 257 (412)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCCEEE
T ss_pred C-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cceEEE
Confidence 2 67677765 7899999999999999999999999998777752 12221 344445668999998 78 699999
Q ss_pred ecchHHHhhccCCh--------H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEEEe
Q 003466 702 LATNAVFDSFVGDS--------K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIELQ 747 (818)
Q Consensus 702 l~~~~i~~~l~~~~--------~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~ 747 (818)
++++++++.+.... . .+ .+.+.+.+++++ +.-+... |+++.+++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~ 336 (412)
T 2x5d_A 258 VGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAG-WMVENPKASMYVWAKIP 336 (412)
T ss_dssp EECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCSBSSEEEEECC
T ss_pred EcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCeeeEEEEEcC
Confidence 99999887653211 0 00 011233344332 2222333 566667764
Q ss_pred cCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.. .....+..+++.|++ +||++.++ .+.+|+.++. ++++|++++++|.++++++..
T Consensus 337 ~~-----~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 337 EP-----YAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp TT-----TGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred Cc-----cCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 22 000024568888875 69999873 3789999986 789999999999999987653
No 75
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.81 E-value=5.1e-19 Score=194.66 Aligned_cols=301 Identities=9% Similarity=0.015 Sum_probs=195.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
++|||.++. ..++ . +|+|.+|+.+++.....+....+..+...++++.+.+..+.+ ..+.++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE-T-PKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC-C-CHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC-C-CHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 589998865 3455 5 899999999998554433322334567778888887765521 1378999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
+.+. .. .+..+|++...+||+....+.. .|...
T Consensus 100 ~~~~-----~~--------------~~gd~vl~~~p~~~~~~~~~~~-~g~~~--------------------------- 132 (376)
T 3ezs_A 100 SFVL-----FD--------------YQNPTIAYPNPFYQIYEGAAKF-IKAKS--------------------------- 132 (376)
T ss_dssp HHHT-----TT--------------CSSCEEEEEESCCTHHHHHHHH-TTCEE---------------------------
T ss_pred HHHc-----CC--------------CCCCEEEEecCCcHhHHHHHHH-cCCEE---------------------------
Confidence 9871 11 0024799999999985543222 21110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.... +. ++. .+++.+. .++.+|++... ++..|.+.
T Consensus 133 -~~~~~~~~-------------~~----~~~-------------~l~~~~~--------~~~~~v~~~~p-~nptG~~~- 171 (376)
T 3ezs_A 133 -LLMPLTKE-------------ND----FTP-------------SLNEKEL--------QEVDLVILNSP-NNPTGRTL- 171 (376)
T ss_dssp -EEEECCGG-------------GT----SCC-------------CCCHHHH--------HHCSEEEECSS-CTTTCCCC-
T ss_pred -EEcccCCC-------------CC----cch-------------hHHhhhc--------cCCCEEEEcCC-CCCcCCCC-
Confidence 00111000 00 000 1122232 13446666543 78888766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc---------ccCCCCcEEEeccccc-CCccccceeecchHHH
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e---------~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
|.+.+++|.++|++||+++|+||++++|.+.|...... .++...++.+++|.+| .| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 78889999999999999999999999998888544332 3455666779999997 77 7999999999988
Q ss_pred hhccCCh--------H--------HH------H---HH---HHHHH-HcCCCeeEEEeeeeEEEEEEecCcccCCCchHH
Q 003466 709 DSFVGDS--------K--------LW------D---LE---LIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYGSLY 759 (818)
Q Consensus 709 ~~l~~~~--------~--------~~------~---~~---l~~~l-~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~ 759 (818)
+.+.... . .+ . +. ..+.+ +....+. ....|.++.+++. +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~-~---------- 318 (376)
T 3ezs_A 251 EKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFKNTL-IYPYSFYVYLPVQ-N---------- 318 (376)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC-CCSBSSEEEEECS-C----------
T ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcceEEEEECC-C----------
Confidence 7664210 0 00 0 00 11111 1111222 4456777777664 2
Q ss_pred HHHHHHHHHh-CCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLRE-DGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 760 a~~~~~~l~e-~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+++.|++ +||++.|+ .+.+|+.++. |+++|++++++|.+++++
T Consensus 319 ~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 319 GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 4567888887 89999872 3789998873 899999999999988754
No 76
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.80 E-value=1.9e-18 Score=193.23 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=196.9
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCCh
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SG 470 (818)
+|+ ++||+.++.. .+| . +|++.+|+ +++++.. .+....+..+...++++.+....+.+ ..+.++++++|
T Consensus 41 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGV----RIHHLNIGQP--DLK-T-PEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTC----EEEECSSCCC--CSC-C-CTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 567 8999988654 455 4 78999999 8886532 11111223455566666665533211 13689999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 112 t~a~~~~~~~~~-----~~g----------------d~Vl~~~~~~~~~~~~-~~~~g~~~------------------- 150 (409)
T 2gb3_A 112 SEAILFSFAVIA-----NPG----------------DEILVLEPFYANYNAF-AKIAGVKL------------------- 150 (409)
T ss_dssp HHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHH-HHHHTCEE-------------------
T ss_pred HHHHHHHHHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHcCCEE-------------------
Confidence 999999999761 122 4799999999986532 22222210
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.... ++ |.. .+.|++.+. .++++|+++.. +
T Consensus 151 ---------~~v~~~~~-------------~~----~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~ 184 (409)
T 2gb3_A 151 ---------IPVTRRME-------------EG----FAI-----------PQNLESFIN--------ERTKGIVLSNP-C 184 (409)
T ss_dssp ---------EEEECCGG-------------GT----SCC-----------CTTGGGGCC--------TTEEEEEEESS-C
T ss_pred ---------EEeccCCC-------------CC----Ccc-----------HHHHHHhhC--------cCCeEEEECCC-C
Confidence 00110000 00 000 022333332 26788888876 7
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEE--Eeccccc-CCccccceeecch-
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN- 705 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgKgLg-gGy~PlsAvl~~~- 705 (818)
+..|.+. |.+++++|.++|++||+++|+||++++|++.|+.... ..++ ..|++ +++|.+| +| +++|++++++
T Consensus 185 nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~ 261 (409)
T 2gb3_A 185 NPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNE 261 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCH
T ss_pred CCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcH
Confidence 8788765 7899999999999999999999999998777754433 2233 34765 7899998 67 6999999998
Q ss_pred HHHhhccC------C-hH--------HH-----------------HHHHHHHHHcCCCee-EEEeeeeEEEEEEecCccc
Q 003466 706 AVFDSFVG------D-SK--------LW-----------------DLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCN 752 (818)
Q Consensus 706 ~i~~~l~~------~-~~--------~~-----------------~~~l~~~l~~~~~v~-~vrg~Gl~~~iel~~~~~~ 752 (818)
++++.+.. . .. .+ .+.+.+.+++++... .....|.++.+.+. .
T Consensus 262 ~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~--- 337 (409)
T 2gb3_A 262 ELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-V--- 337 (409)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS-S---
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeC-C---
Confidence 88765421 1 11 01 012233444443211 11223555555654 1
Q ss_pred CCCchHHHHHHHHHHHhC------CceEeec----------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 003466 753 AGYGSLYAASLLKKLRED------GVYMRPL----------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLK 816 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~------Gvlv~p~----------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~~~~ 816 (818)
..+..+++.|+++ ||++.+. .+.+|+.++ +++++|++++++|.++++++. ....
T Consensus 338 -----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~---~~~~ 407 (409)
T 2gb3_A 338 -----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC---SSRI 407 (409)
T ss_dssp -----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH---C---
T ss_pred -----CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh---hccc
Confidence 1145688889887 9999873 468999988 899999999999999987764 3455
Q ss_pred cC
Q 003466 817 SC 818 (818)
Q Consensus 817 ~~ 818 (818)
+|
T Consensus 408 ~~ 409 (409)
T 2gb3_A 408 SC 409 (409)
T ss_dssp --
T ss_pred CC
Confidence 55
No 77
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.80 E-value=1.6e-17 Score=183.70 Aligned_cols=291 Identities=9% Similarity=-0.058 Sum_probs=193.2
Q ss_pred CCCCCHHHHHHHHHhhhhccccc-CCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhh
Q 003466 414 DATLQIELARDMGYTAARFGHVM-FPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (818)
Q Consensus 414 Gh~~hp~V~eAi~~q~~~~~~~~-~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~ 487 (818)
|+. +|++.+|+.+++++..... ... ...+...++.++|+++++....+.++|+++|++|++.+++.+ +.+.-
T Consensus 33 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~-~~~~~ 110 (406)
T 1kmj_A 33 AQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSW-GNSNV 110 (406)
T ss_dssp CCC-CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHT-HHHHC
T ss_pred CCC-CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHh-hhhcC
Confidence 577 9999999999998753111 000 124567889999999987411368999999999999999987 32211
Q ss_pred cccccccccCCCccccccceEEEEEcCCCCCCcccccc---ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC
Q 003466 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (818)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als---~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~ 564 (818)
.. ..+|++.+.+|||....... ..|... ..++.
T Consensus 111 ~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~----------------------------~~~~~ 146 (406)
T 1kmj_A 111 RA----------------GDNIIISQMEHHANIVPWQMLCARVGAEL----------------------------RVIPL 146 (406)
T ss_dssp CT----------------TCEEEEETTCCGGGTHHHHHHHHHHTCEE----------------------------EEECB
T ss_pred CC----------------CCEEEEecccchHHHHHHHHHHHhCCCEE----------------------------EEEec
Confidence 12 24799999999986533211 112110 01111
Q ss_pred cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHH
Q 003466 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (818)
Q Consensus 565 P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~ 644 (818)
+..+ ..|+ +.+++.+. .++++|+++++ ++..|.+.+ ++
T Consensus 147 ~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~~~~~-~nptG~~~~----l~ 184 (406)
T 1kmj_A 147 NPDG-----------TLQL------------------ETLPTLFD--------EKTRLLAITHV-SNVLGTENP----LA 184 (406)
T ss_dssp CTTS-----------CBCG------------------GGHHHHCC--------TTEEEEEEESB-CTTTCCBCC----HH
T ss_pred CCCC-----------CcCH------------------HHHHHHhc--------cCCeEEEEeCC-CccccCcCC----HH
Confidence 1000 0111 34555553 36789999997 888998886 99
Q ss_pred HHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC--------
Q 003466 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD-------- 714 (818)
Q Consensus 645 ~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~-------- 714 (818)
+|.++|++||+++|+||+++ +|... +.... ..+|++ +++|.+|. ..+|++++++++++.+...
T Consensus 185 ~i~~l~~~~~~~li~D~~~~-~g~~~--~~~~~--~~~d~~~~s~~K~~g~--~G~G~~~~~~~~~~~~~~~~~~~~~~~ 257 (406)
T 1kmj_A 185 EMITLAHQHGAKVLVDGAQA-VMHHP--VDVQA--LDCDFYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIA 257 (406)
T ss_dssp HHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGGTTSC--TTCEEEEECHHHHHHCCCSSCSTTSEE
T ss_pred HHHHHHHHcCCEEEEEchhh-cCCCC--Ccccc--cCCCEEEEEchhccCC--CCcEEEEEeHHHHhhcCCcccCCCcee
Confidence 99999999999999999995 44432 12222 348886 59999843 2378899999988765320
Q ss_pred --------------------hH-------------HHH---------------HHHHHHHHcCCCeeEEEe--eeeEEEE
Q 003466 715 --------------------SK-------------LWD---------------LELIQQISSHRTVQRVVA--LGTLCAI 744 (818)
Q Consensus 715 --------------------~~-------------~~~---------------~~l~~~l~~~~~v~~vrg--~Gl~~~i 744 (818)
.. .+. +.+.+.+++.+.+.-+.. .|.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 337 (406)
T 1kmj_A 258 TVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF 337 (406)
T ss_dssp EEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE
T ss_pred ecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE
Confidence 00 011 112334445554443333 6778888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+... .+..+.+.|.++||+++++ .+.+|+.++..+|++|+++++++|+++++.+
T Consensus 338 ~~~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 338 NLGKH---------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EETTC---------CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCC---------CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 76321 1446778899999999863 2789999999999999999999999988654
No 78
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.80 E-value=2.1e-18 Score=190.54 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=193.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.+|.. .++ . +|.+.+|+.+++++...+. ......+|.+.|+++++.. .+.++|+++|++|++.+++
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP-P-PPFLLEAVRRALGRQDQYA----PPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCSC--SSC-C-CHHHHHHHHHHTTTSCSCC----CTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHHH
Confidence 5788887654 455 5 8999999999987621111 1123567888888887643 3589999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+. .. ..+|++.+.+||+... ++...|...
T Consensus 97 ~~~-----~~----------------gd~Vl~~~~~~~~~~~-~~~~~g~~~---------------------------- 126 (381)
T 1v2d_A 97 SLV-----GP----------------GDEVVVLEPFFDVYLP-DAFLAGAKA---------------------------- 126 (381)
T ss_dssp HHC-----CT----------------TCEEEEEESCCTTHHH-HHHHTTCEE----------------------------
T ss_pred HhC-----CC----------------CCEEEEcCCCchhHHH-HHHHcCCEE----------------------------
Confidence 771 12 2479999999998553 222222110
Q ss_pred eeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 560 WILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 560 ~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++.+ +.+ ..| .+.+++.+. .++++|+++.. ++..|.+
T Consensus 127 ~~v~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~~ 168 (381)
T 1v2d_A 127 RLVRLDLTPEGF-----------RLD------------------LSALEKALT--------PRTRALLLNTP-MNPTGLV 168 (381)
T ss_dssp EEEECEEETTEE-----------ECC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred EEEeCCCCCccC-----------CcC------------------HHHHHHhcC--------cCCEEEEECCC-CCCCCCc
Confidence 011111 000 011 144554442 35788888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCccc--CCc-cchhcccCCCCcEEEeccccc-CCccccceeecchHHHhhcc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGV-ETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR--tG~-~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
. |.+++++|.++|++||+++|+||++++|.. .+. .... .++..+++.+++|.+| .| +++|++++++++++.+.
T Consensus 169 ~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (381)
T 1v2d_A 169 F-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLA 245 (381)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHH
T ss_pred c-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 5 789999999999999999999999998743 222 2222 4577778889999998 67 79999999988876553
Q ss_pred CCh--------H--------HHH-------------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCc
Q 003466 713 GDS--------K--------LWD-------------------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYG 756 (818)
Q Consensus 713 ~~~--------~--------~~~-------------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~ 756 (818)
... . .+. +.+.+.+++.+ +.-+.. .|.++.+++...
T Consensus 246 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~------- 317 (381)
T 1v2d_A 246 GMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPGW------- 317 (381)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTTC-------
T ss_pred HHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcceEEEEecChH-------
Confidence 211 0 010 11223344432 222222 255665655321
Q ss_pred hHHHHHHHHHHHhCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 757 SLYAASLLKKLREDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 757 ~~~a~~~~~~l~e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
. +.+.|.++||++.+. .+.+|+.++. ++++|++++++|.+++++..+.
T Consensus 318 -~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 318 -D----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp -C----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred -h----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence 1 556778999999873 3689999886 8999999999999998776543
No 79
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.80 E-value=5e-18 Score=187.03 Aligned_cols=292 Identities=12% Similarity=0.027 Sum_probs=189.8
Q ss_pred eecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc------cCCCCCCcEEEeCChhHHHH
Q 003466 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (818)
Q Consensus 402 lD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~------~~~~~l~~v~f~~SGseA~e 475 (818)
||+.++.. .+| . +|++.+|+.+++++.+... ..+......++.+.|+++ .+.. .+.++++++|++|++
T Consensus 33 idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP-P-SEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC-C-CHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC-C-CHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 78887654 466 5 8999999999997742111 111122123555555555 3321 368999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++.+.+||+....+. ..|...
T Consensus 107 ~~~~~l~-----~~g----------------d~Vl~~~~~y~~~~~~~~-~~g~~~------------------------ 140 (369)
T 3cq5_A 107 QLLQAFG-----GPG----------------RTALGFQPSYSMHPILAK-GTHTEF------------------------ 140 (369)
T ss_dssp HHHHHHC-----STT----------------CEEEEEESSCTHHHHHHH-HTTCEE------------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEcCCChHHHHHHHH-HcCCEE------------------------
Confidence 9998761 222 379999999998654322 222110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++..+.+ ..| .+.+++.+.+ .++++|++++. ++..|.
T Consensus 141 ----~~v~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 141 ----IAVSRGADF-----------RID------------------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ----EEEECCTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ----EEecCCcCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 001100000 001 2456666652 14578888886 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccC-CCCcEEEeccccc-CCccccceeecchHHHhhcc
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~g-v~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
+.+ .++++++|+.+++++|+||++++|++....... +.++ ..+++.+++|.+| +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 775 577777888888999999999988754333322 3445 4566779999998 77 79999999999887664
Q ss_pred CChH--------------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 713 GDSK--------------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 713 ~~~~--------------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.... .+ .+.+.+.+++.+ +..+...|.++.+++..+ +..
T Consensus 255 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~----------~~~ 323 (369)
T 3cq5_A 255 LVRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELG-YAVVPSESNFVFFGDFSD----------QHA 323 (369)
T ss_dssp TTSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECCSSSEEEEECCSS----------HHH
T ss_pred HcCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCCCCeEEEEECCCC----------HHH
Confidence 3211 00 012233344332 333456677777766411 456
Q ss_pred HHHHHHhCCceEeec--CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL--GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~--g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.|.++||++.+. .+.+|+.++ +++|+++++++|++++
T Consensus 324 l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 324 AWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp HHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 788899999999986 478999987 7899999999998875
No 80
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.80 E-value=3.9e-18 Score=190.40 Aligned_cols=313 Identities=10% Similarity=-0.029 Sum_probs=201.0
Q ss_pred CcCccccceeecccccccc-cCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCC
Q 003466 393 QKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~-~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~S 469 (818)
+|+ ++||+.++..+. .++ . +|++.+|+.+++++.. .+....+..+...++++.+....+.+ ..+.++++++
T Consensus 36 ~g~----~~i~l~~~~~~~~~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 36 KGI----KVIRLNIGDPVKFDFQ-P-PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp TTC----CCEECCCCCGGGTTCC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred cCC----CEEEecCCCCCcCCCC-C-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 577 899998876532 455 4 7999999999987632 11111123455666666665543211 1368999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.+++.+. ..| .+|++.+.+||+....+ ...|...
T Consensus 110 ~~~al~~~~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~~-~~~g~~~------------------ 149 (406)
T 1xi9_A 110 VTEALQLIFGALL-----DPG----------------DEILVPGPSYPPYTGLV-KFYGGKP------------------ 149 (406)
T ss_dssp HHHHHHHHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HHTTCEE------------------
T ss_pred hHHHHHHHHHHhC-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCEE------------------
Confidence 9999999999761 122 37999999999854332 2222110
Q ss_pred CCcccccCcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
..++..... .|+ | .+.|++.+. .++++|+++..
T Consensus 150 ----------~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~i~~p 183 (406)
T 1xi9_A 150 ----------VEYRTIEEE----------DWQPD------------------IDDIRKKIT--------DRTKAIAVINP 183 (406)
T ss_dssp ----------EEEEEEGGG----------TSEEC------------------HHHHHHHCC--------TTEEEEEEESS
T ss_pred ----------EEeecCCCc----------CCcCC------------------HHHHHHhhC--------cCceEEEEECC
Confidence 011110000 000 1 256666664 25778888876
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCC-cEE--Eeccccc-CCccccceee--
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGVIPLAATL-- 702 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~P-Div--tlgKgLg-gGy~PlsAvl-- 702 (818)
++..|.+. |++++++|.++|++||+++|+||++++|++.|.......++-.. |++ +++|.+| .| +++|+++
T Consensus 184 -~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~ 260 (406)
T 1xi9_A 184 -NNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYFV 260 (406)
T ss_dssp -CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEEE
T ss_pred -CCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCc-cEEEEEEEe
Confidence 88888765 78999999999999999999999999987644444444444111 444 6799998 67 7999999
Q ss_pred cch----HHHhhccC-----Ch--H--------HH-----------------HHHHHHHHHcCCCeeEEEee-eeEEEEE
Q 003466 703 ATN----AVFDSFVG-----DS--K--------LW-----------------DLELIQQISSHRTVQRVVAL-GTLCAIE 745 (818)
Q Consensus 703 ~~~----~i~~~l~~-----~~--~--------~~-----------------~~~l~~~l~~~~~v~~vrg~-Gl~~~ie 745 (818)
+++ ++++.+.. .. . .+ .+.+.+.+++++.+.-+... |+++.+.
T Consensus 261 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 340 (406)
T 1xi9_A 261 DPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK 340 (406)
T ss_dssp CTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCE
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEe
Confidence 888 87765421 00 0 11 01233445556554333333 4444445
Q ss_pred EecCcccCCCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.... . ..+..+++.|+ ++||++.+. .+.+|+.++ +++++|++++++|.++++++
T Consensus 341 ~~~~~---~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 341 IEVGP---W---KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp ECSCS---C---SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred cCccC---C---CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 54210 0 12456888887 899999874 478999997 88999999999999998764
No 81
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.80 E-value=1.1e-18 Score=195.28 Aligned_cols=303 Identities=8% Similarity=0.008 Sum_probs=193.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-C-CCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~-l~~v~f~~SGseA~e 475 (818)
++||+.+|.. .+| . +|.|.+|+.+++++... +....+..+....+++.+.+..+.+ . .+.++++++|++|++
T Consensus 48 ~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP-T-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 8999998765 466 5 89999999999865211 1111123344555555555443532 1 158999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+ ...| .+|++.+.+||+....+. ..|....
T Consensus 124 ~~~~~l-----~~~g----------------d~Vl~~~p~y~~~~~~~~-~~g~~~~----------------------- 158 (404)
T 2o1b_A 124 AVPTCV-----INPG----------------DYVLLPDPGYTDYLAGVL-LADGKPV----------------------- 158 (404)
T ss_dssp HHHHHH-----CCTT----------------CEEEEEESCCSSHHHHHH-HTTCEEE-----------------------
T ss_pred HHHHHh-----cCCC----------------CEEEEcCCCchhHHHHHH-HCCCEEE-----------------------
Confidence 999976 1122 379999999998664332 2222100
Q ss_pred cCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 556 YNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
.++.. +.+ -.|+ +.+++.+. .++++|+++.. ++..|
T Consensus 159 -----~v~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 159 -----PLNLEPPHY-----------LPDW------------------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp -----EEECCTTTC-----------CCCG------------------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred -----EeccCcccC-----------cCCH------------------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 01110 000 0111 22333443 25678888754 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---chhc-ccCCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
.+. |.+++++|.++|++||+++|+||++++|.+.|+. +... .++....+.+++|.+| .| +++|++++++++++
T Consensus 196 ~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 STA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 765 8899999999999999999999999998766642 2211 1233455679999998 78 79999999999887
Q ss_pred hccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCC
Q 003466 710 SFVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~ 755 (818)
.+..... .+. +.+.+.+++++ +.-+... |+++.+++...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~------ 346 (404)
T 2o1b_A 274 ALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGIYVWLETPPG------ 346 (404)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSSEEEEECCTT------
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcceEEEEeCCCC------
Confidence 6532110 111 11233445453 3333333 55666776422
Q ss_pred chHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+..+++.|+ ++||++.++ .+.+|+.++. ++++|++++++|.+++++
T Consensus 347 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 347 --YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp --CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred --CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 11456788887 579999873 4789999986 788999999999887654
No 82
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.79 E-value=2.3e-18 Score=190.87 Aligned_cols=312 Identities=12% Similarity=0.041 Sum_probs=195.1
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCC
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~S 469 (818)
.+|+ +||||.+|.. .++. +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 3677 9999998763 3443 7899999999987522 11111223455666666665543311 1368999999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.+++... ..| .+|++...+||+..... ...|...
T Consensus 100 ~~~al~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~-~~~g~~~------------------ 139 (391)
T 3h14_A 100 SSGGFLLAFTALF-----DSG----------------DRVGIGAPGYPSYRQIL-RALGLVP------------------ 139 (391)
T ss_dssp HHHHHHHHHHHHC-----CTT----------------CEEEEEESCCHHHHHHH-HHTTCEE------------------
T ss_pred hHHHHHHHHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCEE------------------
Confidence 9999999999761 222 37899999998755322 2222110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++.... + .|. .| .+. +++ . ++.+|+++..
T Consensus 140 ----------~~v~~~~~-------------~----~~~--~d--------~~~----l~~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 140 ----------VDLPTAPE-------------N----RLQ--PV--------PAD----FAG----L---DLAGLMVASP- 170 (391)
T ss_dssp ----------EEEECCGG-------------G----TTS--CC--------HHH----HTT----S---CCSEEEEESS-
T ss_pred ----------EEeecCcc-------------c----CCC--CC--------HHH----HHh----c---CCeEEEECCC-
Confidence 00111000 0 000 00 122 221 1 5667777775
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCCCCcEEEeccccc-CCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i 707 (818)
++..|.+. |.+.+++|.++|++||+++|+||++++|++.|..... +..+....+.+++|.+| .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 78888866 7788999999999999999999999999888763332 22222233448999998 78 799999999988
Q ss_pred HhhccCChH--------------------------------HHHHHHHHHHHcCCCeeEEEeee-eEEEEEEecCcccCC
Q 003466 708 FDSFVGDSK--------------------------------LWDLELIQQISSHRTVQRVVALG-TLCAIELQAAGCNAG 754 (818)
Q Consensus 708 ~~~l~~~~~--------------------------------~~~~~l~~~l~~~~~v~~vrg~G-l~~~iel~~~~~~~~ 754 (818)
++.+..... ...+.+.+.+++++....++..| +++.+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 324 (391)
T 3h14_A 249 VRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT---- 324 (391)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC----
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC----
Confidence 776532110 01122344455555443334444 55556664311
Q ss_pred CchHHHHHHHHHHHhC-CceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 755 YGSLYAASLLKKLRED-GVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~-Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
..+..+++.|+++ ||++.++ .+.+|+.++. ++++|++++++|.+++++....
T Consensus 325 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~~ 385 (391)
T 3h14_A 325 ---DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGEG 385 (391)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC---
T ss_pred ---CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhccc
Confidence 1255688888876 9999872 3589999886 7899999999999998876543
No 83
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.79 E-value=1.3e-17 Score=188.09 Aligned_cols=319 Identities=13% Similarity=0.014 Sum_probs=202.1
Q ss_pred EeCCcCccccceeecccccccc-cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC----CCCcE
Q 003466 390 YQDQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG----WASRA 464 (818)
Q Consensus 390 ~D~dG~~~~~~ylD~~sg~~~~-~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~----~l~~v 464 (818)
.+.+|+ .+||+..|.... +-..- +|+|.+|+.+++++.....+ .......++.+.|+++++.. ..+++
T Consensus 49 ~~~~~~----~~i~l~~g~~~~~g~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~v 121 (427)
T 3dyd_A 49 KPNPNK----TMISLSIGDPTVFGNLPT-DPEVTQAMKDALDSGKYNGY--APSIGFLSSREEIASYYHCPEAPLEAKDV 121 (427)
T ss_dssp CCCTTS----CCEECCCSCTTTTSSSCC-CHHHHHHHHHHHHHCCSSSC--CCTTCCHHHHHHHHHHHCBTTBCCCGGGE
T ss_pred cccCCC----CEEeCCCcCCCccCCCCC-CHHHHHHHHHHHhcCcCCCC--CCCCCcHHHHHHHHHHHhhcCCCCChHHE
Confidence 344577 899999887432 12345 89999999999886422111 01222345556666654410 13689
Q ss_pred EEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 465 ~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
+++++|++|++.+++.+. +.| .+|++.+.+|++....+... |...
T Consensus 122 ~~t~g~t~al~~~~~~l~-----~~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~------------- 166 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLA-----NPG----------------QNILVPRPGFSLYKTLAESM-GIEV------------- 166 (427)
T ss_dssp EEESSHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHHHHHT-TCEE-------------
T ss_pred EEecCcHHHHHHHHHHhc-----CCC----------------CEEEEcCCCchhHHHHHHHc-CCEE-------------
Confidence 999999999999999871 222 37889999998855332222 1110
Q ss_pred CcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
+.+|.... ++ +. -| .+.+++.+. .+..+|+
T Consensus 167 -----------------~~~~~~~~-----------~~----~~--~d--------~~~l~~~l~--------~~~~~v~ 196 (427)
T 3dyd_A 167 -----------------KLYNLLPE-----------KS----WE--ID--------LKQLEYLID--------EKTACLI 196 (427)
T ss_dssp -----------------EEEEEEGG-----------GT----TE--EC--------HHHHHSSCC--------TTEEEEE
T ss_pred -----------------EEEecccc-----------cC----CC--CC--------HHHHHHHhc--------cCCCEEE
Confidence 00110000 00 00 00 144554443 2355566
Q ss_pred EccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhcccCCCCcEE---Eeccccc-CCccccc
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLA 699 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgKgLg-gGy~Pls 699 (818)
+... ++..|.+. |++.+++|.++|++||+++|+||++++|++.|..+ ....++..++++ +++|.++ .| +++|
T Consensus 197 i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG 273 (427)
T 3dyd_A 197 VNNP-SNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLG 273 (427)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCE
T ss_pred EECC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceE
Confidence 6654 78888866 88899999999999999999999999999988744 555667677776 8999965 46 7999
Q ss_pred eeecc-------hHHHhhccCCh-------H--------HH------------------HHHHHHHHHcCCCeeEEEee-
Q 003466 700 ATLAT-------NAVFDSFVGDS-------K--------LW------------------DLELIQQISSHRTVQRVVAL- 738 (818)
Q Consensus 700 Avl~~-------~~i~~~l~~~~-------~--------~~------------------~~~l~~~l~~~~~v~~vrg~- 738 (818)
+++++ +++++.+.... . .+ .+.+.+.|++++.+..+...
T Consensus 274 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~ 353 (427)
T 3dyd_A 274 WILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSG 353 (427)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSB
T ss_pred EEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCe
Confidence 99987 45665432110 0 11 11234455666666555444
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|+++.+.+.... .++......+++.|+ ++||++.|+ .+.+|+... +++++|++++++|.++++++
T Consensus 354 g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 354 AMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp TTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 445555664221 000112456777775 889999984 378999864 78999999999999888654
No 84
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.79 E-value=1.3e-17 Score=185.15 Aligned_cols=304 Identities=10% Similarity=0.069 Sum_probs=197.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-----~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA 473 (818)
++|||.+| ...... +|+|.+|+.+++++.. .+....+..+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG---NPSIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC---CCCSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC---CCCCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 79999876 222236 8999999999988732 12112233566777777777654421 13689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++.+. . +++.+|++.+.+||+....+.. .|...
T Consensus 112 l~~~~~~l~-----~---------------~g~d~vl~~~p~~~~~~~~~~~-~g~~~---------------------- 148 (398)
T 3ele_A 112 LSICFRALT-----S---------------DAYDEFITIAPYFPEYKVFVNA-AGARL---------------------- 148 (398)
T ss_dssp HHHHHHHHC-----C---------------STTCEEEEESSCCTHHHHHHHH-TTCEE----------------------
T ss_pred HHHHHHHHc-----C---------------CCCCEEEEeCCCchhhHHHHHH-cCCEE----------------------
Confidence 999999771 1 2224799999999985433222 22110
Q ss_pred cccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 554 FMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 554 ~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++... .+ .-| .+.+++.+. .++.+|++... ++.
T Consensus 149 ------~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~np 184 (398)
T 3ele_A 149 ------VEVPADTEHF-----------QID------------------FDALEERIN--------AHTRGVIINSP-NNP 184 (398)
T ss_dssp ------EEECCCTTTS-----------SCC------------------HHHHHHTCC--------TTEEEEEECSS-CTT
T ss_pred ------EEEecCCcCC-----------cCC------------------HHHHHHHhC--------cCCCEEEEcCC-CCC
Confidence 0011100 00 001 255666553 35777888664 788
Q ss_pred CCcccCCHHHHHHHHHHHHh------cCCcEEEeecccCcccCCccc--hhcccCCCCcEEEeccccc-CCccccceeec
Q 003466 633 GGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~------~gilLI~DEV~TGfGRtG~~~--a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~ 703 (818)
.|.+. |.+.+++|.++|++ ||+++|+||++++|++.|... ..+.++....+.+++|.+| .| +++|++++
T Consensus 185 tG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~ 262 (398)
T 3ele_A 185 SGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLV 262 (398)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEEC
T ss_pred CCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEE
Confidence 88866 77789999999999 999999999999998877532 2244455555668999998 88 79999999
Q ss_pred chHHHh------hcc---------CCh-H-------------------HHHHHHHHHHHcCCCeeEEEee-eeEEEEEEe
Q 003466 704 TNAVFD------SFV---------GDS-K-------------------LWDLELIQQISSHRTVQRVVAL-GTLCAIELQ 747 (818)
Q Consensus 704 ~~~i~~------~l~---------~~~-~-------------------~~~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~ 747 (818)
++++++ .+. ... . ...+.+.+.+++.+. .-+... |.++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~ 341 (398)
T 3ele_A 263 PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTRIGY-HCFKPDGAFYMFVKAL 341 (398)
T ss_dssp CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHHHTC-CEECCSBSSEEEEECS
T ss_pred cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC-eecCCCeeEEEEEEcC
Confidence 887432 110 010 0 111233444544432 222223 444555553
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.. .+..+++.|.++||++.++ .+.+|+... +++++|++++++|.++++++
T Consensus 342 ~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 342 ED---------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp SS---------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 21 1456788899999999984 378999875 79999999999999998765
No 85
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.2e-18 Score=194.28 Aligned_cols=317 Identities=10% Similarity=0.019 Sum_probs=200.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ 476 (818)
++||+.+|.. .++ . +|.|.+|+.+++++.+ ++....+..+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS-P-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC-C-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 8999988754 445 5 8999999999998632 22212234566777777776655432 12579999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+||+.+.+||+.... +...|....
T Consensus 134 ~~~~l~-----~~g----------------d~Vlv~~p~y~~~~~~-~~~~g~~~~------------------------ 167 (447)
T 3b46_A 134 CLMGLL-----NAG----------------DEVIVFEPFFDQYIPN-IELCGGKVV------------------------ 167 (447)
T ss_dssp HHHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEEE------------------------
T ss_pred HHHHHc-----CCC----------------CEEEEeCCCchhHHHH-HHHcCCEEE------------------------
Confidence 999761 222 3799999999985533 222222110
Q ss_pred CcceeecC-cch--hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 557 NSKWILSL-PEW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 557 ~~~~~v~~-P~~--~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
.++. ++. ..+.. ...+. ..| .+.|++.+. .++++|+++.. ++..
T Consensus 168 ----~v~~~~~~~~~~~~~-~~~~~-~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~npt 214 (447)
T 3b46_A 168 ----YVPINPPKELDQRNT-RGEEW-TID------------------FEQFEKAIT--------SKTKAVIINTP-HNPI 214 (447)
T ss_dssp ----EEEEECCGGGGTSCB-CSTTS-EEC------------------HHHHHTTCC--------TTEEEEEEESS-CTTT
T ss_pred ----EEeCCCccccccccc-cccCc-ccC------------------HHHHHHhhc--------cCCeEEEEeCC-CCCC
Confidence 0110 000 00000 00000 011 244555442 46788888876 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---chh--cccCCCCcEEEeccccc-CCccccceeec-chH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNA 706 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---~a~--e~~gv~PDivtlgKgLg-gGy~PlsAvl~-~~~ 706 (818)
|.+. +.+++++|.++|++||+++|+||++++|++.|.. ... ..++..+++.+++|.++ .| +++|++++ +++
T Consensus 215 G~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~ 292 (447)
T 3b46_A 215 GKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAE 292 (447)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHH
Confidence 8775 6899999999999999999999999998777742 222 23577777889999998 78 69999999 998
Q ss_pred HHhhccCChH----------------HHH-------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 707 VFDSFVGDSK----------------LWD-------------------LELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 707 i~~~l~~~~~----------------~~~-------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
+++.+..... .+. +.+.+.+++++........|.++.+++.....
T Consensus 293 l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~ 372 (447)
T 3b46_A 293 LLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKI 372 (447)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCC
T ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccC
Confidence 8876542110 010 11223344433211123446777777743200
Q ss_pred cCCC-------chHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 752 NAGY-------GSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 752 ~~~~-------~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+... ....+..+++.|+ ++||++.|+ .+.+|++++ .++++|++++++|.+
T Consensus 373 p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 373 PEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp CTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred ccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 0000 0123557888887 689999873 478999987 489999999998876
No 86
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.79 E-value=4.1e-18 Score=188.50 Aligned_cols=307 Identities=13% Similarity=0.030 Sum_probs=195.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCC-CCCc-EEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~-~l~~-v~f~~SGseA~e~ 476 (818)
.+||+.++.. .+| . +|++.+|+.+++++... +....+..+...++++.+.+..+.. ..+. ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-T-PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 6888887653 456 5 89999999999876321 1111123455666666665543411 1357 9999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 103 ~~~~~~-----~~g----------------d~vl~~~~~~~~~~~~-~~~~g~~~------------------------- 135 (389)
T 1gd9_A 103 GLSAFL-----KDG----------------EEVLIPTPAFVSYAPA-VILAGGKP------------------------- 135 (389)
T ss_dssp HHTTTC-----CTT----------------CEEEEEESCCTTHHHH-HHHHTCEE-------------------------
T ss_pred HHHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHCCCEE-------------------------
Confidence 998761 122 4799999999986532 22222110
Q ss_pred CcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++..... + |. | .+.+++.+. .++++|+++.. ++..|.
T Consensus 136 ---~~v~~~~~~--------~--~~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 175 (389)
T 1gd9_A 136 ---VEVPTYEED--------E--FRLN------------------VDELKKYVT--------DKTRALIINSP-CNPTGA 175 (389)
T ss_dssp ---EEEECCGGG--------T--TCCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred ---EEeccCCcc--------C--CCCC------------------HHHHHHhcC--------cCceEEEEECC-CCCCCc
Confidence 011111000 0 00 1 255666664 25778888775 787887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhccc-CC-CCc--EEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPD--IACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~-gv-~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|+ ......+ +. ..| +.+++|.+| .| +++|++++++++++
T Consensus 176 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 253 (389)
T 1gd9_A 176 VL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIE 253 (389)
T ss_dssp CC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHH
Confidence 65 788999999999999999999999999877776 3333332 22 245 448999998 67 79999999998877
Q ss_pred hccCCh--------H--------------H--HH-----------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccC
Q 003466 710 SFVGDS--------K--------------L--WD-----------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNA 753 (818)
Q Consensus 710 ~l~~~~--------~--------------~--~~-----------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~ 753 (818)
.+.... . . +. +.+.+.+++++. .-+.. .|+++.+++....
T Consensus 254 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~--- 329 (389)
T 1gd9_A 254 RMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGL-PTVKPKGAFYIFPRIRDTG--- 329 (389)
T ss_dssp HHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCBTTEECCBCGGGT---
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC-eecCCCeeeEEEEeccCCC---
Confidence 553210 0 0 00 112233444432 11122 2445555553210
Q ss_pred CCchHHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|+ ++||++.++ .+.+|+.++. ++++|++++++|.+++++.+
T Consensus 330 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 330 ----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp ----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence 12456888898 899999873 4689999874 89999999999999887643
No 87
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.79 E-value=1.5e-18 Score=191.16 Aligned_cols=266 Identities=17% Similarity=0.101 Sum_probs=180.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc
Q 003466 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (818)
Q Consensus 445 ~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al 524 (818)
..+|.+.|++++..-..+.++++++|++|++.+++.+. ..| ..||+...+||+.... +
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----EPG----------------DHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----CTT----------------CEEEEEESSCTHHHHH-H
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----CCC----------------CEEEEeCCCchhHHHH-H
Confidence 46788888887632114689999999999999999761 222 3799999999884422 2
Q ss_pred cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHH
Q 003466 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSY 603 (818)
Q Consensus 525 s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~ 603 (818)
...|... ..++.+... .| .| .+.
T Consensus 123 ~~~g~~~----------------------------~~v~~~~~~----------~~~~d------------------~~~ 146 (375)
T 3op7_A 123 KSLGAEV----------------------------DLWQIEEEN----------GWLPD------------------LEK 146 (375)
T ss_dssp HHTTCEE----------------------------EEEEEEGGG----------TTEEC------------------HHH
T ss_pred HHcCCEE----------------------------EEEeccccC----------CCCCC------------------HHH
Confidence 2222110 001110000 00 01 256
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCc
Q 003466 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD 683 (818)
Q Consensus 604 Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PD 683 (818)
+++.+. .++++|++++. ++..|... |++++++|.++|++||+++|+||++++|++.+.....+.++..++
T Consensus 147 l~~~l~--------~~~~~v~~~~~-~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 216 (375)
T 3op7_A 147 LRQLIR--------PTTKMICINNA-NNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA 216 (375)
T ss_dssp HHHHCC--------TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred HHHhhc--------cCCeEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence 666664 35778899986 88888766 889999999999999999999999999887755555566777788
Q ss_pred EEEeccccc-CCccccceeecchHHHhhccCChH----------------H-------H----------HHHHHHHHHcC
Q 003466 684 IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK----------------L-------W----------DLELIQQISSH 729 (818)
Q Consensus 684 ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~----------------~-------~----------~~~l~~~l~~~ 729 (818)
+.+++|++| +| +++|++++++++++.+..... . + .+.+.+.++++
T Consensus 217 ~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (375)
T 3op7_A 217 VNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE 295 (375)
T ss_dssp EEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998 77 799999999999887654321 0 0 01223345556
Q ss_pred CCeeEEEeeee-EEEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 730 RTVQRVVALGT-LCAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 730 ~~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
+.+..++..|. +.-+.+... .....+++.| .++||++.|+ .+.+|+... .++++|++++++|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~--~~~~~i~~~l~~l~ 365 (375)
T 3op7_A 296 PLVSYIRPAVVSTSFVKIAVD--------MPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFA--CEQETLIKGLEKLS 365 (375)
T ss_dssp TTEEECCCSSSSCEEEEECCS--------SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCC--SCHHHHHHHHHHHH
T ss_pred CCceEecCCCeEEEeEEcCCC--------CCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEec--CCHHHHHHHHHHHH
Confidence 66655554443 333444322 1245677777 4889999984 378888754 55689999999999
Q ss_pred HHHHHHH
Q 003466 803 QRLEEFD 809 (818)
Q Consensus 803 ~~l~~l~ 809 (818)
++++++.
T Consensus 366 ~~l~~~~ 372 (375)
T 3op7_A 366 QFLRRFD 372 (375)
T ss_dssp HHHGGGC
T ss_pred HHHHHHh
Confidence 9987653
No 88
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.79 E-value=1.1e-17 Score=185.21 Aligned_cols=301 Identities=15% Similarity=0.068 Sum_probs=193.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
.+||+.++.. .+| . +|++.+|+.++++.. ..+....+..+...++++.+.+..+.+ ..+ .++++++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD-G-PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 6899988654 456 5 899999999998762 111111123455666666665544421 135 89999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+ ...| .+|++.+.+||+... ++...|...
T Consensus 107 ~~~~~-----~~~g----------------d~vl~~~p~~~~~~~-~~~~~g~~~------------------------- 139 (386)
T 1u08_A 107 AITAL-----VRNG----------------DEVICFDPSYDSYAP-AIALSGGIV------------------------- 139 (386)
T ss_dssp HHHHH-----CCTT----------------CEEEEEESCCTTHHH-HHHHTTCEE-------------------------
T ss_pred HHHHh-----CCCC----------------CEEEEeCCCchhHHH-HHHHcCCEE-------------------------
Confidence 99976 1122 379999999998543 222222110
Q ss_pred CcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 557 NSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++... .+ ..| .+.+++.+. .++++|+++.. ++..|.
T Consensus 140 ---~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~nptG~ 178 (386)
T 1u08_A 140 ---KRMALQPPHF-----------RVD------------------WQEFAALLS--------ERTRLVILNTP-HNPSAT 178 (386)
T ss_dssp ---EEEECCTTTC-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred ---EEeecCcccC-----------cCC------------------HHHHHHhhc--------ccCEEEEEeCC-CCCCCc
Confidence 0011100 00 011 255666653 35788888875 788887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc----cchhc-ccCCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~----~~a~e-~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. |.+++++|.++|++||+++|+||++++|.+.|. +.... .++....+.+++|.+| .| +++|++++++++++
T Consensus 179 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 256 (386)
T 1u08_A 179 VW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISA 256 (386)
T ss_dssp CC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHH
Confidence 65 788999999999999999999999999877664 22222 3566667789999998 68 79999999999877
Q ss_pred hccCCh--------H--------HHH-----------------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCC
Q 003466 710 SFVGDS--------K--------LWD-----------------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGY 755 (818)
Q Consensus 710 ~l~~~~--------~--------~~~-----------------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~ 755 (818)
.+.... . .+. +.+.+.+++++ +.-+. ..|.++.+++.... .
T Consensus 257 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~---~- 331 (386)
T 1u08_A 257 EIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTYFLLVDYSAVS---T- 331 (386)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSSEEEEECTTTC---C-
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceEEEEEecCCCC---C-
Confidence 553211 0 010 11223334443 22122 23567777764320 0
Q ss_pred chHHHHHHHHHHH-hCCceEeec---------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 756 GSLYAASLLKKLR-EDGVYMRPL---------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 756 ~~~~a~~~~~~l~-e~Gvlv~p~---------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..+..+++.|+ ++||++.++ .+.+|+.++ .++++|++++++|.+
T Consensus 332 --~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 332 --LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp --SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 01456777776 689999863 268999987 489999999998853
No 89
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.78 E-value=7.8e-18 Score=185.19 Aligned_cols=290 Identities=13% Similarity=0.033 Sum_probs=186.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc-cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+.++.. .+|+ +|++.+|+.++++... .+....+..+...++++.+....+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 8999988654 4664 6999999999987632 11111223455556666665432211 136899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.+. ..| .+|++.+.+||+....+ ...|..
T Consensus 106 ~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~-~~~g~~--------------------------- 136 (370)
T 2z61_A 106 LSSII-----DDG----------------DEVLIQNPCYPCYKNFI-RFLGAK--------------------------- 136 (370)
T ss_dssp HHHHC-----CTT----------------CEEEEESSCCTHHHHHH-HHTTCE---------------------------
T ss_pred HHHhc-----CCC----------------CEEEEeCCCchhHHHHH-HHcCCE---------------------------
Confidence 99771 122 47999999999855332 211111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
.+.+| .| .+.+++.+. .++++|+++.. ++..|.+.
T Consensus 137 ---~~~v~---------------~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 137 ---PVFCD---------------FT------------------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp ---EEEEC---------------SS------------------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred ---EEEeC---------------CC------------------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 00111 11 145666664 25778888775 78888887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc-CC-CCc--EEEeccccc-CCccccceeecchHHHhhcc
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GC-VPD--IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~-gv-~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~~l~ 712 (818)
+ .+ |.++|++||+++|+||++++|.+.|+......+ +. ..| +.+++|.+| .| +++|++++++++++.+.
T Consensus 172 ~-~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 D-RE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp C-HH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred C-HH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 5 33 999999999999999999988777754333333 12 124 458999998 77 69999999999877553
Q ss_pred CChH-------------------H-HH--------------HHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCch
Q 003466 713 GDSK-------------------L-WD--------------LELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 713 ~~~~-------------------~-~~--------------~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~ 757 (818)
.... . .. +.+.+.+++++ +.-+.. .|.++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~--------- 315 (370)
T 2z61_A 246 KLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVFPNIGE--------- 315 (370)
T ss_dssp HHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEECCBCSS---------
T ss_pred HHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEEEecCC---------
Confidence 2110 1 01 11223344442 211122 24444444432
Q ss_pred HHHHHHHHHHH-hCCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLR-EDGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 758 ~~a~~~~~~l~-e~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+.+.|+ ++||++.++ .+.+|+.++ +++++|++++++|.++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 1456888887 789999873 468999998 689999999999988764
No 90
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.78 E-value=4.5e-18 Score=190.16 Aligned_cols=311 Identities=11% Similarity=0.022 Sum_probs=195.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCC-cEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~-~v~f~~SGseA~e~ 476 (818)
.+||+.+|.. .+| . +|++.+|+.+++++. ..+....+..+...++++.+.+..+.+ ..+ .++++++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-G-PPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 5788887653 456 5 899999999999762 111111223455666666665544421 135 89999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+. ..| .+|++.+.+||+... ++...|...
T Consensus 102 ~~~~~~-----~~g----------------d~Vl~~~~~y~~~~~-~~~~~g~~~------------------------- 134 (411)
T 2o0r_A 102 AVLGLV-----EPG----------------SEVLLIEPFYDSYSP-VVAMAGAHR------------------------- 134 (411)
T ss_dssp HHHHHC-----CTT----------------CEEEEEESCCTTHHH-HHHHTTCEE-------------------------
T ss_pred HHHHhc-----CCC----------------CEEEEeCCCcHhHHH-HHHHcCCEE-------------------------
Confidence 999761 222 379999999998543 222222110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++..... ++. ..| .+.+++.+. .++++|+++.. ++..|.+
T Consensus 135 ---~~v~~~~~~-------~~~-~~d------------------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 135 ---VTVPLVPDG-------RGF-ALD------------------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp ---EEEECEEET-------TEE-ECC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred ---EEeeccccc-------cCC-CCC------------------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 011111000 000 011 255666663 35788888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCccccceeecchHHHhh
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
. |.+++++|.++|++||+++|+||++++|++.|+. ..... ++....+.+++|.+| .| +++|++++++++++.
T Consensus 177 ~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 L-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp C-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 5 7899999999999999999999999998877752 12211 344455668999998 78 799999999998775
Q ss_pred ccCChH----------------HHH-----------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCch
Q 003466 711 FVGDSK----------------LWD-----------------LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 711 l~~~~~----------------~~~-----------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~ 757 (818)
+..... .+. +.+.+.+++.+........|+++.+++.... .
T Consensus 255 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~---~--- 328 (411)
T 2o0r_A 255 VRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLG---Y--- 328 (411)
T ss_dssp HHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGT---C---
T ss_pred HHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCC---C---
Confidence 532110 110 1122334333321111234667777775310 0
Q ss_pred HHHHHHHHHHH-hCCceEeec------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLR-EDGVYMRPL------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 758 ~~a~~~~~~l~-e~Gvlv~p~------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+++.|+ ++||++.++ .+.+|+.+. .++++|++++++|.+++++.+
T Consensus 329 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 329 DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 01456777776 679999862 246899986 489999999999988776543
No 91
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.78 E-value=2.3e-17 Score=185.43 Aligned_cols=316 Identities=11% Similarity=0.025 Sum_probs=192.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh------------hcccccCCCCCChhHHHHHHHHHhccC----CCCCCc
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA------------RFGHVMFPENVYEPALECAELLLQGVG----KGWASR 463 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~------------~~~~~~~~~~~~~~~~eLae~L~~~~~----~~~l~~ 463 (818)
.+||+.++. +.+| +|.+.+++.++.. ....+....+..+....+++.+....+ .. .+.
T Consensus 37 ~~i~l~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~ 110 (428)
T 1iay_A 37 GVIQMGLAE--NQLC---LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PER 110 (428)
T ss_dssp SBEECSSCC--CCSS---HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTS
T ss_pred ceeeecccc--chhh---HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhh
Confidence 577777532 3444 6789999886531 111111111233445555555544322 11 368
Q ss_pred EEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccC
Q 003466 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (818)
Q Consensus 464 v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~ 543 (818)
++++++|++|++.+++.+. ..| .+|++.+.+||+.........|...
T Consensus 111 i~~~~G~~~ai~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~~------------ 157 (428)
T 1iay_A 111 VVMAGGATGANETIIFCLA-----DPG----------------DAFLVPSPYYPAFNRDLRWRTGVQL------------ 157 (428)
T ss_dssp CEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCTTHHHHTTTTTCCEE------------
T ss_pred EEEccChHHHHHHHHHHhC-----CCC----------------CeEEEccCCCcchHHHHHHhcCCEE------------
Confidence 9999999999999999771 222 3799999999985433222222210
Q ss_pred CCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
..++..... + | .| .+.+++.+++.. ....++++
T Consensus 158 ----------------~~v~~~~~~--------~--~~~d------------------~~~l~~~l~~~~--~~~~~~~~ 191 (428)
T 1iay_A 158 ----------------IPIHCESSN--------N--FKIT------------------SKAVKEAYENAQ--KSNIKVKG 191 (428)
T ss_dssp ----------------EEECCCTTT--------T--TCCC------------------HHHHHHHHHHHH--HTTCCEEE
T ss_pred ----------------EEeecCCcc--------C--CcCC------------------HHHHHHHHHHHH--hcCCceEE
Confidence 001110000 0 0 01 144555554200 02346777
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc-------CCCCc----EEEeccc
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IACYGKL 690 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~-------gv~PD----ivtlgKg 690 (818)
|++... ++..|.+. |.+++++|.++|++||+++|+||++++|++.|..+ ....+ ++.+| +.+++|+
T Consensus 192 v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~ 269 (428)
T 1iay_A 192 LILTNP-SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKD 269 (428)
T ss_dssp EEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTT
T ss_pred EEEcCC-CCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhh
Confidence 776654 67778765 88999999999999999999999999976666432 11111 34478 5699999
Q ss_pred cc-CCccccceeec-chHHHhhccC------ChH-------------H-HH--------------HHHHHHHHcCCCeeE
Q 003466 691 LT-GGVIPLAATLA-TNAVFDSFVG------DSK-------------L-WD--------------LELIQQISSHRTVQR 734 (818)
Q Consensus 691 Lg-gGy~PlsAvl~-~~~i~~~l~~------~~~-------------~-~~--------------~~l~~~l~~~~~v~~ 734 (818)
+| .| +++|++++ ++++++.+.. ... . +. +.+.+.+++++ +.-
T Consensus 270 ~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 347 (428)
T 1iay_A 270 MGLPG-FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKC 347 (428)
T ss_dssp SSCGG-GCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCB
T ss_pred cCCCC-ceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc
Confidence 98 78 79999998 6777765421 111 1 10 11233444443 222
Q ss_pred EEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 735 VVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 735 vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+++ .|.++.+++.... ...+...+..+++.|+++ ||++.++ .+.+|+.++ .++++++++++++|++++
T Consensus 348 ~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 348 LKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp CCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 334 5777777775421 011112355788899986 9999974 258999998 689999999999999887
Q ss_pred HH
Q 003466 806 EE 807 (818)
Q Consensus 806 ~~ 807 (818)
++
T Consensus 425 ~~ 426 (428)
T 1iay_A 425 GV 426 (428)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 92
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.77 E-value=3.4e-18 Score=189.67 Aligned_cols=299 Identities=8% Similarity=-0.028 Sum_probs=188.4
Q ss_pred EEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEe
Q 003466 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (818)
Q Consensus 388 ~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~ 467 (818)
.++|.+++ .+.++...+++..++|. .++..+ ...+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h~-~~~~~~--------------------~~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNHM-SKAFQE--------------------VMNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCTT-SHHHHH--------------------HHHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCCC-CHHHHH--------------------HHHHHHHHHHHHhCCC--CEEEEc
Confidence 47888998 88888877778788888 665443 3346777788877743 578899
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCc
Q 003466 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGL 546 (818)
Q Consensus 468 ~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~ 546 (818)
+||++|++++++.+ .. ..+||+++.+|||.+...+... |...
T Consensus 58 ~sgt~a~~~~~~~~------~~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL------TI----------------DEDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH------CT----------------TCEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC------CC----------------CCeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999998654 12 2489999999999764433322 1100
Q ss_pred ccCCCcccccCcceeecCcc----hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 003466 547 FLDPPTVFMYNSKWILSLPE----WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (818)
Q Consensus 547 ~~~~p~~~~~~~~~~v~~P~----~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA 622 (818)
....++.|. .+.. .....| .+.+++.+.. .++.+
T Consensus 101 -----------~~~~~~~~~~g~~~~~~------~~~~~d------------------~~~l~~~i~~-------~~~~~ 138 (379)
T 3ke3_A 101 -----------SSTVLTAERTEDTEAPK------PFAPVD------------------IETAVAKIKE-------DKSAI 138 (379)
T ss_dssp -----------EEEEEECEESSCCSSCC------CEECCC------------------HHHHHHHHHH-------HTCSE
T ss_pred -----------ceEEEeccccccccccC------CCCCCC------------------HHHHHHHHhh-------cCCcE
Confidence 001111111 0000 000111 2556667742 13345
Q ss_pred EEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceee
Q 003466 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702 (818)
Q Consensus 623 VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl 702 (818)
|++..+ .+..|.+. |.+++++|+++|++||+++|+||+++ | +..+..+.+|+...+.+++|+|+|+ ..+|+++
T Consensus 139 v~~~~~-~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~ 211 (379)
T 3ke3_A 139 VYAPHV-ETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVM 211 (379)
T ss_dssp EEEESE-ETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEE
T ss_pred EEEEee-cCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEE
Confidence 666554 55567665 78899999999999999999999996 4 4566677778765566677999886 4688999
Q ss_pred cchHHHhhccC----------------------C------hH-------------HHH---------------HHHHHHH
Q 003466 703 ATNAVFDSFVG----------------------D------SK-------------LWD---------------LELIQQI 726 (818)
Q Consensus 703 ~~~~i~~~l~~----------------------~------~~-------------~~~---------------~~l~~~l 726 (818)
+++++++.+.. + .. .+. +.+.+.+
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99988664421 0 00 011 1123334
Q ss_pred HcCCC--eeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----------CCEEEEECCCCChHHH
Q 003466 727 SSHRT--VQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------GNVIYLMCGPCSSPEV 793 (818)
Q Consensus 727 ~~~~~--v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------g~~ir~~ppl~~t~ed 793 (818)
++.+. +.. ....+.+..+... + . ...+.+.|.++||++.+. ++.+|+.++..+|++|
T Consensus 292 ~~~g~~~~~~~~~~~~~i~~~~~~-~--------~-~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~d 361 (379)
T 3ke3_A 292 TDKGIESVAAEGFEAPGVVVSYTE-R--------D-DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTD 361 (379)
T ss_dssp HHTTCCBSBCTTCBCSSEEEEECS-C--------H-HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTC
T ss_pred HHcCCEecCCccccCceEEEEccC-C--------c-chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHH
Confidence 44332 111 0012223333221 1 1 112367788999998874 5799999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 794 CSQLLLKLYQRLEEFD 809 (818)
Q Consensus 794 Id~~~~~l~~~l~~l~ 809 (818)
|++++++|+++++++.
T Consensus 362 i~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 362 IDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 93
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.77 E-value=3.7e-17 Score=181.52 Aligned_cols=301 Identities=13% Similarity=0.053 Sum_probs=191.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
++||+.++.. .+|+ +|.+.+|+.+++++... +....+..+...++++.+.+..+.+ ..+.++++++|++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 8999988654 4563 69999999999876321 1111123445555555555433421 136899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 118 ~~~l~-----~~g----------------d~Vl~~~~~~~~~~~~-~~~~g~~~-------------------------- 149 (389)
T 1o4s_A 118 FMALL-----DPG----------------DEVIVFSPVWVSYIPQ-IILAGGTV-------------------------- 149 (389)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEE--------------------------
T ss_pred HHHhC-----CCC----------------CEEEEcCCCchhHHHH-HHHcCCEE--------------------------
Confidence 99761 122 3799999999985533 22222110
Q ss_pred cceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~ 636 (818)
..++..... .|+ | .+.+++.+. .++++|+++.. ++..|.+
T Consensus 150 --~~v~~~~~~----------~~~~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~ 190 (389)
T 1o4s_A 150 --NVVETFMSK----------NFQPS------------------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV 190 (389)
T ss_dssp --EEEECCGGG----------TTCCC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEecCCcc----------CCCCC------------------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC
Confidence 011110000 000 1 245666553 25778888775 7878876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC--CCc--EEEeccccc-CCccccceeecchHHHhhc
Q 003466 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPD--IACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 637 ~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv--~PD--ivtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
. |++++++|.++|++||+++|+||++++|...|+......+.- ..| +.+++|.+| .| +++|++++++++++.+
T Consensus 191 ~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l 268 (389)
T 1o4s_A 191 Y-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAV 268 (389)
T ss_dssp C-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 5 789999999999999999999999998877665333322221 234 458999998 67 7999999999987655
Q ss_pred cCCh--------H----------------------HHHHHHHHHHHcCCCeeEEEe-eeeEEEEEEecCcccCCCchHHH
Q 003466 712 VGDS--------K----------------------LWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 712 ~~~~--------~----------------------~~~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
.... . ...+.+.+.+++++. .-+.. .|.++.+.+. . .+
T Consensus 269 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~-~---------~~ 337 (389)
T 1o4s_A 269 SKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGV-KFVEPEGAFYLFFKVR-G---------DD 337 (389)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTC-CCCCCSBSSEEEEECS-S---------CH
T ss_pred HHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-eeecCCcceEEEEeCC-C---------CH
Confidence 3211 0 001123344444422 11112 2555555553 1 14
Q ss_pred HHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 761 ~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+++.|+ ++||++.+. ++.+|+.++ .++++|++++++|.++++
T Consensus 338 ~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 338 VKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 56888887 889999874 368999988 389999999999988764
No 94
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=9.9e-18 Score=184.31 Aligned_cols=293 Identities=14% Similarity=0.026 Sum_probs=185.3
Q ss_pred CHHHHHHHHHhhhhccc-ccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhc--cccccc
Q 003466 418 QIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEVLVD 494 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~--~G~~~~ 494 (818)
+|++.+|+.+++++... ........+...+++++|+++++.+ .+.++|+++|++|++.|++.++..+..+ .|.
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~--- 118 (397)
T 3f9t_A 43 LPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKGL--- 118 (397)
T ss_dssp CTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc---
Confidence 79999999999876422 1110122456678889999988754 3688999999999999999984321110 000
Q ss_pred ccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
......+|++.+.+|++ +..++...|... ..++....+
T Consensus 119 -------~~~~gd~vl~~~~~~~~-~~~~~~~~g~~~----------------------------~~v~~~~~~------ 156 (397)
T 3f9t_A 119 -------SKNEHPKIIVPITAHFS-FEKGREMMDLEY----------------------------IYAPIKEDY------ 156 (397)
T ss_dssp -------CCCSSCEEEEETTCCTH-HHHHHHHHTCEE----------------------------EEECBCTTS------
T ss_pred -------cCCCCeEEEECCcchhH-HHHHHHHcCcee----------------------------EEEeeCCCC------
Confidence 00123467777776666 333333333210 011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+.+ .++++|++++. ++..|.+.+ +++|.++|++||
T Consensus 157 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 201 (397)
T 3f9t_A 157 -----TID------------------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIAKENN 201 (397)
T ss_dssp -----SBC------------------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHHHHHT
T ss_pred -----cCC------------------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHHHHhC
Confidence 011 2567777763 15667887776 788888765 999999999999
Q ss_pred CcEEEeecccCc--ccCCc---------cchhcccCCCCcEEEecccccCCccccceeecchHH-Hhhc-------cCC-
Q 003466 655 IPVIFDEVFTGF--WRLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV-FDSF-------VGD- 714 (818)
Q Consensus 655 ilLI~DEV~TGf--GRtG~---------~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i-~~~l-------~~~- 714 (818)
+++|+||+++++ +.+|+ .+..+. ++.+.+.+++|.+++| .++|+++++++. .+.+ ...
T Consensus 202 ~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 279 (397)
T 3f9t_A 202 IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIGYKRYLDVDAPYLTETR 279 (397)
T ss_dssp CEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGGGGGGTCEECTTSSSSE
T ss_pred CeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHHHHHhhccCCccccCCC
Confidence 999999999864 34553 333444 6666666788999887 599998886553 3221 110
Q ss_pred ----------hH---------H---------------HHHHHHHHHHcCCC--eeEEEeeeeEEEEEEecCcccCCCchH
Q 003466 715 ----------SK---------L---------------WDLELIQQISSHRT--VQRVVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 ----------~~---------~---------------~~~~l~~~l~~~~~--v~~vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
.. . ..+.+.+.+++++. +.. ..+.++.+.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~---------- 347 (397)
T 3f9t_A 280 QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE--PILNIVAIEDED---------- 347 (397)
T ss_dssp ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC--CSSSEEEEECTT----------
T ss_pred ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC--CCccEEEEEeCC----------
Confidence 01 0 01123344444422 221 234444443321
Q ss_pred HHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|+++++
T Consensus 348 -~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 348 -YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp -HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 4568899999999999865 8999999999999999999999998764
No 95
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.77 E-value=1.4e-16 Score=177.21 Aligned_cols=302 Identities=8% Similarity=-0.014 Sum_probs=198.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc---CCCCC---ChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~---~~~~~---~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
.++++.++. .++. +|+|.+|+.++++++.... ...+. ++...++.++|+++++....+.++|+++|++|
T Consensus 28 ~~i~l~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAA----TSQK-PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTT----CCCC-CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCc----cCCC-CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 677776533 2477 9999999999998753110 00011 34567899999998874113689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc--c-ccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--A-MEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~--a-ls~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++.+++.+ +...-.. ..+|++.+.+||+.... . ....|...
T Consensus 103 ~~~~~~~~-~~~~~~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~------------------- 146 (420)
T 1t3i_A 103 INLVAYSW-GMNNLKA----------------GDEIITTVMEHHSNLVPWQMVAAKTGAVL------------------- 146 (420)
T ss_dssp HHHHHHHT-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHHCCEE-------------------
T ss_pred HHHHHHHh-hhcccCC----------------CCEEEECcchhHHHHHHHHHHHHhcCcEE-------------------
Confidence 99999987 2111111 24799999999985421 1 11111110
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.+..+ ..| .+.+++.+. .++++|+++++ +
T Consensus 147 ---------~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 147 ---------KFVQLDEQE-----------SFD------------------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp ---------EEECBCTTS-----------SBC------------------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred ---------EEeccCCCC-----------CcC------------------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 011111000 011 255666663 36789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~ 708 (818)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|++++| |.+|+ ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~~--~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCAP--TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTSC--TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcCC--CceEEEEEchHHH
Confidence 88898886 8999999999999999999995 54432 1223334 7998777 95543 2488899999987
Q ss_pred hhccCC---------------------------hH-------------HHH---------------HHHHHHHHcCCCee
Q 003466 709 DSFVGD---------------------------SK-------------LWD---------------LELIQQISSHRTVQ 733 (818)
Q Consensus 709 ~~l~~~---------------------------~~-------------~~~---------------~~l~~~l~~~~~v~ 733 (818)
+.+... .. .+. +.+.+.+++.+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 328 (420)
T 1t3i_A 249 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLR 328 (420)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 755321 00 011 11234455555443
Q ss_pred EEE------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------CCEEEEECCCCChHHHH
Q 003466 734 RVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------GNVIYLMCGPCSSPEVC 794 (818)
Q Consensus 734 ~vr------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------g~~ir~~ppl~~t~edI 794 (818)
-+. +.|.++.+.+... .+..+.+.|.++||++.+. .+.+|+.++..+|++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i 399 (420)
T 1t3i_A 329 LYGPNPKHGDRAALASFNVAGL---------HASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEI 399 (420)
T ss_dssp EESCCGGGSCBCSEEEEEETTB---------CHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHH
T ss_pred EeCCCccccccCCEEEEEECCC---------CHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHH
Confidence 222 2477888876421 1446788899999999875 46899999998999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003466 795 SQLLLKLYQRLEEFD 809 (818)
Q Consensus 795 d~~~~~l~~~l~~l~ 809 (818)
++++++|+++++++.
T Consensus 400 ~~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 400 DLFLQSLQATIRFFS 414 (420)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987764
No 96
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.76 E-value=1.6e-17 Score=182.99 Aligned_cols=286 Identities=13% Similarity=0.095 Sum_probs=193.8
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCC---CCC--ChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~---~~~--~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t 486 (818)
..|+. +|+|.+|+.++++...+.... .+. .+...++.++|+++++.+ .+.++|+++|++|++.+++.+ + .
T Consensus 24 ~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~-~-~- 98 (390)
T 1elu_A 24 GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL-D-W- 98 (390)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHS-C-C-
T ss_pred ccCCC-CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHHHHHHhCC-C-C-
Confidence 36888 899999999999875321100 011 256788999999988743 358999999999999999976 2 1
Q ss_pred hcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
.. ..+|++.+.+||+...... ...|... ..++
T Consensus 99 -~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~ 133 (390)
T 1elu_A 99 -HQ----------------GDEILLTDCEHPGIIAIVQAIAARFGITY----------------------------RFFP 133 (390)
T ss_dssp -CT----------------TCEEEEETTCCHHHHHHHHHHHHHHCCEE----------------------------EEEC
T ss_pred -CC----------------CCEEEEecCcccHHHHHHHHHHHHhCcEE----------------------------EEEc
Confidence 11 2479999999998653211 1112110 0111
Q ss_pred Cc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHH
Q 003466 564 LP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (818)
Q Consensus 564 ~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~ 641 (818)
.+ ..+ ..| .+.+++.+. .++++|+++++ ++..|.+.+
T Consensus 134 ~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~--- 172 (390)
T 1elu_A 134 VAATLNQ-----------GDA------------------AAVLANHLG--------PKTRLVILSHL-LWNTGQVLP--- 172 (390)
T ss_dssp CGGGSSS-----------SCH------------------HHHHHTTCC--------TTEEEEEEESB-CTTTCCBCC---
T ss_pred CCCCCCc-----------cch------------------HHHHHHhcC--------CCceEEEEecc-ccCCceecC---
Confidence 11 000 001 244554442 36889999997 888898886
Q ss_pred HHHHHHHHHH----hcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCC-
Q 003466 642 FQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGD- 714 (818)
Q Consensus 642 fl~~LreLc~----~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~- 714 (818)
+++|.++|+ +||+++|+||+++ +|.... ......+|+++ ++|.+.|| ..+|++++++++++.+...
T Consensus 173 -~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~----~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 245 (390)
T 1elu_A 173 -LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL----DFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTY 245 (390)
T ss_dssp -HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC----CTTTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCS
T ss_pred -HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC----ChhhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCcc
Confidence 999999999 9999999999995 665431 11234579887 99988887 5789999999887765421
Q ss_pred ----------------------h----H--------------HH----------------HHHHHHHHHcCCCeeEE---
Q 003466 715 ----------------------S----K--------------LW----------------DLELIQQISSHRTVQRV--- 735 (818)
Q Consensus 715 ----------------------~----~--------------~~----------------~~~l~~~l~~~~~v~~v--- 735 (818)
. . .+ .+.+.+.+++++.+.-+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 325 (390)
T 1elu_A 246 VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS 325 (390)
T ss_dssp CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS
T ss_pred ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc
Confidence 0 0 00 01223445555544333
Q ss_pred EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHH
Q 003466 736 VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 736 rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
++.|.++.+++... ..+..+.+.|.++||++.+.. +.+|+.++..+|++|+++++++|++
T Consensus 326 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 326 APQAGLVSFTVDSP--------LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CCSSSEEEEEECSS--------SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred cccccEEEEEcCCC--------CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 45688888877422 124568888999999999864 8999999999999999999998864
No 97
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.76 E-value=1.9e-17 Score=181.67 Aligned_cols=294 Identities=11% Similarity=0.014 Sum_probs=190.4
Q ss_pred CCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
.+|+ .+|||.++.. .++ . +|+|.+|+.+++++.+... ..+..+...+|.++|+++++.. .+.++|+++|+
T Consensus 23 ~~~~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~ 92 (360)
T 3hdo_A 23 PDIA----SWIKLNTNEN--PYP-P-SPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSD 92 (360)
T ss_dssp SCCT----TSEECSSCCC--SSC-C-CHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred cccc----ceeeccCCCC--CCC-C-CHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHH
Confidence 3567 8999998543 343 4 8999999999998742111 0122223367888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++.. .+.| .+|++.+.+||+....+.. .|...
T Consensus 93 ~al~~~~~~l-----~~~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~~-------------------- 130 (360)
T 3hdo_A 93 EVLNNLIRAF-----AAEG----------------EEIGYVHPSYSYYGTLAEV-QGARV-------------------- 130 (360)
T ss_dssp HHHHHHHHHH-----CCTT----------------CEEEEESSSCTHHHHHHHH-HTCEE--------------------
T ss_pred HHHHHHHHHH-----hCCC----------------CEEEEcCCChHHHHHHHHH-CCCEE--------------------
Confidence 9999999976 1222 3789999999985533222 22110
Q ss_pred cccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++..+. +. ++++++ ....+ +++++.. ++
T Consensus 131 --------~~v~~~~~-------------------~~---------------~~~l~~-----~~~~~--~v~i~~p-~n 160 (360)
T 3hdo_A 131 --------RTFGLTGD-------------------FR---------------IAGFPE-----RYEGK--VFFLTTP-NA 160 (360)
T ss_dssp --------EEECBCTT-------------------SS---------------BTTCCS-----SBCSS--EEEEESS-CT
T ss_pred --------EEeeCCCC-------------------CC---------------HHHHHh-----hcCCC--EEEEeCC-CC
Confidence 00110000 00 011111 11122 5555554 78
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchHHHhh
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~ 710 (818)
..|.+.+ .++++++|+++|+++|+||++++|+..+.....+.++....+.+++|.+| +| +++|++++++++++.
T Consensus 161 ptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~ 235 (360)
T 3hdo_A 161 PLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAA 235 (360)
T ss_dssp TTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHH
T ss_pred CCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHH
Confidence 8888886 67899999999999999999998854443333344555556678999997 67 799999999998876
Q ss_pred ccCCh------H--------H----------------HHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHH
Q 003466 711 FVGDS------K--------L----------------WDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 711 l~~~~------~--------~----------------~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
+.... . . ..+.+.+.++++ .+..+...|.++.+.+... .+
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~---------~~ 305 (360)
T 3hdo_A 236 LDKIRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNYLFATPPDR---------DG 305 (360)
T ss_dssp HHHHSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECTTC---------CH
T ss_pred HHHhCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCccEEEEECCCC---------CH
Confidence 53210 0 0 011234445555 3334456677776655321 25
Q ss_pred HHHHHHHHhCCceEeecC-----CEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPLG-----NVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~g-----~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
..+.+.|.++||++++.+ +.+|++.. +++|+|+++++|++..
T Consensus 306 ~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 306 KRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIG 352 (360)
T ss_dssp HHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 568889999999998743 78999875 8999999999887664
No 98
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.76 E-value=9.2e-18 Score=182.50 Aligned_cols=301 Identities=12% Similarity=0.034 Sum_probs=187.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+++|.+ +..|+. +|+|.+|+.++++.+... .+..+...+++++|+++++.+ .+.++|+++|++|++.+++
T Consensus 14 ~~i~l~~----~~~~~~-~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 14 KPYSFVN----DYSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACS 84 (359)
T ss_dssp -CEECSC----SCSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHH
T ss_pred eeEEecC----CCcCCC-CHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHH
Confidence 4566654 346688 999999999999865432 345788899999999988743 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.++ ..| .+|++.+.+||+.... .+...|..
T Consensus 85 ~~~-----~~g----------------d~vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 115 (359)
T 1svv_A 85 LAL-----RPW----------------EAVIATQLGHISTHETGAIEATGHK---------------------------- 115 (359)
T ss_dssp HHC-----CTT----------------EEEEEETTSHHHHSSTTHHHHTTCC----------------------------
T ss_pred HHh-----CCC----------------CEEEEcccchHHHHHHHHHhcCCCe----------------------------
Confidence 871 122 3789999999875432 11111111
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
...++.+ .+ ..| .+.+++.+.+.. ..++.++++|++++. . ..|.+.
T Consensus 116 ~~~v~~~-~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~~v~~~~~-~-ptG~~~- 161 (359)
T 1svv_A 116 VVTAPCP-DG-----------KLR------------------VADIESALHENR-SEHMVIPKLVYISNT-T-EVGTQY- 161 (359)
T ss_dssp EEEECCT-TS-----------CCC------------------HHHHHHHHHHSC-STTSCEEEEEEEESS-C-TTSCCC-
T ss_pred eEEEeCC-CC-----------eec------------------HHHHHHHHHHHH-hccCCCceEEEEEcC-C-CCceec-
Confidence 0011111 00 001 255666665310 012346889999985 4 567766
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCc--ccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC-
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGf--GRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~- 713 (818)
|.+++++|+++|++||+++|+||++++| |+++........+..+|++++ .|. ||....|++++++++++.+..
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~~~~ 239 (359)
T 1svv_A 162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNARHL 239 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHHHHH
Confidence 5799999999999999999999999776 666542111111124788765 664 443456778888877553321
Q ss_pred ----C-----hH-------------H----------HHHHHHHHHHcCCCeeEEEeeee-EEEEEEecCcccCCCchHHH
Q 003466 714 ----D-----SK-------------L----------WDLELIQQISSHRTVQRVVALGT-LCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 714 ----~-----~~-------------~----------~~~~l~~~l~~~~~v~~vrg~Gl-~~~iel~~~~~~~~~~~~~a 760 (818)
. .. . ..+.+.+.++ .+.+.-+...|. ++.+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~------------- 305 (359)
T 1svv_A 240 IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLE-ACGIRLAWPSASNQLFPILE------------- 305 (359)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH-HTTCCBSSCCSSSEECBEEE-------------
T ss_pred HhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc-cCCeEEccCCccceEEEEcC-------------
Confidence 0 10 0 0112233342 222211111222 2222221
Q ss_pred HHHHHHHHhC-CceEee----cCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLRED-GVYMRP----LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 761 ~~~~~~l~e~-Gvlv~p----~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+++.|+++ ||++.+ ..+.+|+.+++.++++|+++++++|+++++++
T Consensus 306 ~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 2578889999 999864 23689999999999999999999999887654
No 99
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.76 E-value=5.2e-17 Score=182.49 Aligned_cols=313 Identities=10% Similarity=-0.021 Sum_probs=198.2
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEE
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAY 465 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~ 465 (818)
+++.+|+ ++|||.++.. .++ . +|+|.+|+.++++... .+....+..+...++++.+....+.. ..+.++
T Consensus 38 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 38 LEKATGT----KFCRMEMGVP--GLP-A-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHTC----CCEECCCCSC--CSC-C-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHhcCC----CEEeccCcCC--CCC-C-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 5566788 9999998764 344 5 8999999999987522 11111122345555555555432211 136899
Q ss_pred EeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccc-eEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE-LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 466 f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r-~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
|+++|++|++.+++.+ ..+ . ++. .+|++...+||+....+.. .|...
T Consensus 110 ~t~g~t~al~~~~~~l-~~~--~---------------~gd~~~Vl~~~p~~~~~~~~~~~-~g~~~------------- 157 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVA-NRT--H---------------KNREYGTLFIDPGFNLNKLQCRI-LGQKF------------- 157 (437)
T ss_dssp EESHHHHHHHHHHHHH-TTS--C---------------TTCSCCEEEEESCCHHHHHHHHH-HTCCC-------------
T ss_pred EeCCHHHHHHHHHHHH-hcC--C---------------CCCccEEEEeCCCcHhHHHHHHH-cCCEE-------------
Confidence 9999999999999977 100 1 111 1689999999985433322 22110
Q ss_pred CcccCCCcccccCcceeecC-cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAV 623 (818)
..++. ++.+ ... .+.+++.++. .++.+|
T Consensus 158 ---------------~~v~~~~~~~--------------------------~~d---~~~l~~~l~~-------~~~~~v 186 (437)
T 3g0t_A 158 ---------------ESFDLFEYRG--------------------------EKL---REKLESYLQT-------GQFCSI 186 (437)
T ss_dssp ---------------EEEEGGGGCT--------------------------THH---HHHHHHHHTT-------TCCCEE
T ss_pred ---------------EEEeecCCCC--------------------------ccC---HHHHHHHHhc-------CCceEE
Confidence 00110 0000 000 2667777742 234555
Q ss_pred EE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc---------chhcc-cCCCCcEEEeccccc
Q 003466 624 II-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLLT 692 (818)
Q Consensus 624 Iv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~---------~a~e~-~gv~PDivtlgKgLg 692 (818)
++ .| ++..|.+. |.+.+++|.++|++||+++|+||++++|...|.. ..... .+....+.+++|.+|
T Consensus 187 ~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 187 IYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp EEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred EEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 44 66 67778766 7788999999999999999999999876544332 12211 333334558999998
Q ss_pred -CCccccceeecchHHHh-h-----------------ccCChH----------------H----------HH--------
Q 003466 693 -GGVIPLAATLATNAVFD-S-----------------FVGDSK----------------L----------WD-------- 719 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~-~-----------------l~~~~~----------------~----------~~-------- 719 (818)
.| +++|++++++++++ . +..... . +.
T Consensus 264 ~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (437)
T 3g0t_A 264 YAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGR 342 (437)
T ss_dssp CGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred Ccc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 78 79999999999988 6 433211 0 11
Q ss_pred --HHHHHHHHcCCCeeEE-------E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC-------CEEE
Q 003466 720 --LELIQQISSHRTVQRV-------V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-------NVIY 782 (818)
Q Consensus 720 --~~l~~~l~~~~~v~~v-------r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g-------~~ir 782 (818)
+.+.+.++++ .+.-+ . ..|.++.+.+... .+..+++.|.++||++.+.. +.+|
T Consensus 343 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iR 412 (437)
T 3g0t_A 343 KARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM---------DSSKLIEKFVRYGMCAITLKTTGSKRNEAMR 412 (437)
T ss_dssp HHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC---------CHHHHHHHHHHTTEECEESTTTTCCCTTCEE
T ss_pred HHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC---------CHHHHHHHHHHcCeEEeeccccCCCCCCEEE
Confidence 1123344444 23222 3 4566676766511 25578899999999999853 6799
Q ss_pred EECCCCChHHHHHHHHHHHHHHHHH
Q 003466 783 LMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 783 ~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++++.. +++||++++++|.+++++
T Consensus 413 is~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 413 ICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred EEEecC-CHHHHHHHHHHHHHHHhc
Confidence 999854 999999999999887653
No 100
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.75 E-value=6e-17 Score=181.12 Aligned_cols=324 Identities=12% Similarity=0.063 Sum_probs=197.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc---cccCCCCCChhHHHHHHHHHhccCCCC-C-CcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~---~~~~~~~~~~~~~eLae~L~~~~~~~~-l-~~v~f~~SGseA~ 474 (818)
.+||+.+|. ..++ . +|+|.+|+.+++++.. .+....+..+...++++.+.+..+... . +.++|+++|++|+
T Consensus 29 ~~i~l~~g~--~~~~-~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGF--PDFP-P-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSS--CSSC-C-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCC--CCCC-C-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 678887764 2333 4 8999999999987632 121112334667777777776554221 1 4799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
+.+++.+. ..| .+|++...+||+....+. ..|.....-+ . +...
T Consensus 105 ~~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~~~-~~g~~~~~~~----~--------~~~~-- 148 (422)
T 3fvs_A 105 FTAFQALV-----DEG----------------DEVIIIEPFFDCYEPMTM-MAGGRPVFVS----L--------KPGP-- 148 (422)
T ss_dssp HHHHHHHC-----CTT----------------CEEEEEESCCTTHHHHHH-HTTCEEEEEE----C--------BCCC--
T ss_pred HHHHHHHc-----CCC----------------CEEEEcCCCchhhHHHHH-HcCCEEEEEe----c--------cccc--
Confidence 99999761 122 369999999998543322 2222110000 0 0000
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
...+. .+....+ ..| .+.+++.+. .++++|+++.. ++..|
T Consensus 149 ~~~G~--~~~~~~~-----------~~d------------------~~~l~~~~~--------~~~~~v~~~~p-~nptG 188 (422)
T 3fvs_A 149 IQNGE--LGSSSNW-----------QLD------------------PMELAGKFT--------SRTKALVLNTP-NNPLG 188 (422)
T ss_dssp CCSSS--CCBGGGS-----------BCC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTC
T ss_pred ccccc--cccccCC-----------CCC------------------HHHHHhhcC--------CCceEEEECCC-CCCCC
Confidence 00000 0000000 001 144554442 36788888886 88888
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc----CCCCcEEEeccccc-CCccccceeecchHHH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~ 708 (818)
.+. |++.+++|.++|++||+++|+||++++|++.|+.. ....+ +...++.+++|.+| .| +++|+++++++++
T Consensus 189 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~ 266 (422)
T 3fvs_A 189 KVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIM 266 (422)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHH
T ss_pred cCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHH
Confidence 877 88999999999999999999999999998888632 22222 33345668999998 78 7999999999887
Q ss_pred hhccCChH----------------HHH------------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEec
Q 003466 709 DSFVGDSK----------------LWD------------------------LELIQQISSHRTVQRVVALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~~~~~----------------~~~------------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~ 748 (818)
+.+..... .+. +.+.+.+++++........|.++.+++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 346 (422)
T 3fvs_A 267 KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISD 346 (422)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHH
T ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechh
Confidence 75532100 111 11233445553322233456666666643
Q ss_pred CcccCC-----CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAG-----YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 749 ~~~~~~-----~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
...... .+.....+++..|+ ++||++.|+ .+.+|+... .++++|++++++|++++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 347 FKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 110000 00011446677665 579999872 368898865 4999999999999988754
No 101
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.75 E-value=1.2e-17 Score=188.88 Aligned_cols=311 Identities=11% Similarity=0.045 Sum_probs=191.3
Q ss_pred CcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCC-CChhHHHHHHHHHhcc----CCCCCCcEEE
Q 003466 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-VYEPALECAELLLQGV----GKGWASRAYF 466 (818)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~-~~~~~~eLae~L~~~~----~~~~l~~v~f 466 (818)
+|+ ++||+.+|. .++..+|+|++|+.+++++++... ...+ ..+...+|.++|++++ +.. .+.++|
T Consensus 67 ~~~----~~i~l~~g~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~ 137 (449)
T 3qgu_A 67 PDA----KIISLGIGD----TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFI 137 (449)
T ss_dssp TTC----CCEECSSCC----CCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEE
T ss_pred CCC----CEEEeeCCC----CCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEE
Confidence 567 899998862 333238999999999998754211 1112 1223467777777765 221 368999
Q ss_pred eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCc
Q 003466 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546 (818)
Q Consensus 467 ~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~ 546 (818)
+++|++|+..+..++ +.| ..|++.+.+||+........+....++.. .++
T Consensus 138 t~G~~~al~~~~~l~------~~g----------------d~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~----- 187 (449)
T 3qgu_A 138 SDGSKCDIARIQMMF------GSK----------------PTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GFD----- 187 (449)
T ss_dssp ESCHHHHHHHHHHHH------CSS----------------SCEEEEESCCTHHHHHHHHHTCSCCBCSS---SBT-----
T ss_pred ccCHHHHHHHHHHHh------CCC----------------CEEEEcCCCChhHHHHHHHcCCccccccc---ccc-----
Confidence 999999999883222 122 37899999999876444333221101100 000
Q ss_pred ccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 003466 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (818)
Q Consensus 547 ~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE 626 (818)
....++. ++. ..+. ..+++ ..++.+|+++
T Consensus 188 -----------~~~~~~~----------------~~~-~~~~-----------------~~~~~------~~~~~~v~l~ 216 (449)
T 3qgu_A 188 -----------GIEYMVC----------------NPD-NHFF-----------------PDLSK------AKRTDIIFFC 216 (449)
T ss_dssp -----------TEEEEEC----------------CGG-GTTC-----------------CCGGG------CCCCSEEEEE
T ss_pred -----------eeEEEec----------------ccc-cCCc-----------------CChhH------cCCCCEEEEe
Confidence 0011111 100 0000 00111 1345677777
Q ss_pred cccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcc----cCCCCcEEEeccccc-CCccccce
Q 003466 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 627 PV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~----~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
.. ++..|.+. +.+.+++|.++|++||+++|+||++++|++.|.. ..... .++..++.++||.+| .| +++|+
T Consensus 217 ~p-~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~ 293 (449)
T 3qgu_A 217 SP-NNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLGW 293 (449)
T ss_dssp SS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCEE
T ss_pred CC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeEE
Confidence 65 78888766 7889999999999999999999999999887642 22222 234455779999998 78 79999
Q ss_pred eecchHHHhh--------cc--------CChH-----------H---------------HHHHHHHHHHcCCCeeEEEe-
Q 003466 701 TLATNAVFDS--------FV--------GDSK-----------L---------------WDLELIQQISSHRTVQRVVA- 737 (818)
Q Consensus 701 vl~~~~i~~~--------l~--------~~~~-----------~---------------~~~~l~~~l~~~~~v~~vrg- 737 (818)
+++++++++. +. .... . ..+.+.+.+++.+ +.-+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 372 (449)
T 3qgu_A 294 TVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGD 372 (449)
T ss_dssp EECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESS
T ss_pred EecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC
Confidence 9999887652 11 0100 0 0012334445553 222333
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.|.++.+.+. . ..+..+++.|+++ ||++.|+ .+.+|++ +..++++|++++++|.+++++-
T Consensus 373 ~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 373 DAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp SSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC--
T ss_pred CeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhc
Confidence 3666666664 2 1245678888876 9999873 3789998 4569999999999999887653
No 102
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.75 E-value=2e-17 Score=187.90 Aligned_cols=321 Identities=11% Similarity=0.004 Sum_probs=184.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.+++++ ++|.+|+.+++..... .+ ...+...+|.++|+++++ .++++|++||++|++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~y--~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-cc--ccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999886654 6788888877654221 11 234667899999999987 3799999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCC-CCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYH-G~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
++ +.+....|+ . +..||+. .+| +.+..++..+|....... .+.. . +
T Consensus 110 ~~-~~~~~~~Gd------------~-~~~viv~--~~~~~~~~~~~~~~g~~~~~~~--------------~~~~-~-~- 156 (467)
T 1ax4_A 110 VL-LKYKQKEGK------------A-KNPVFIS--NFHFDTTAAHVELNGCKAINIV--------------TEKA-F-D- 156 (467)
T ss_dssp HH-HHHHHHTTC------------C-SSCEEEE--SSCCHHHHHHHHHTTCEEEECB--------------CGGG-G-C-
T ss_pred HH-HHhhccCCC------------c-cceEEEe--ccccchhhHHHhccCCceeccc--------------cccc-c-c-
Confidence 98 433222222 0 0114544 555 555555655543311100 0000 0 0
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
...+.++.. ..| .+.|++.|.. ...+++++|++||+ ++.+|..++
T Consensus 157 ---~~~~~~~~~---------~~d------------------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 157 ---SETYDDWKG---------DFD------------------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ---TTSCCTTTT---------CBC------------------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ---ccccCCccc---------ccC------------------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 000000000 011 2567777763 11247999999997 888755677
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccC---c-------ccCCccchhcccC----CCCcEE--EecccccCCccccceee
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTG---F-------WRLGVETTADLLG----CVPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TG---f-------GRtG~~~a~e~~g----v~PDiv--tlgKgLggGy~PlsAvl 702 (818)
+.+++++|+++|++||++||+||++.. + +..|.-.. .++ -.+|++ +++|++ | +|+|+++
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~~--g-~~~Gg~~ 276 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK--EVIFDMYKYADALTMSAKKDP--L-LNIGGLV 276 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH--HHHHHHGGGCSEEEEETTSTT--C-CSSCEEE
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchh--hhhhhhccccceEEEeccccC--C-CCcceEE
Confidence 899999999999999999999999742 0 22221100 000 125776 456654 4 4776655
Q ss_pred c-c-h-HHHhhcc------CC----hH-----------HHH---------------HHHHHHHHcC--CCeeEEEeeeeE
Q 003466 703 A-T-N-AVFDSFV------GD----SK-----------LWD---------------LELIQQISSH--RTVQRVVALGTL 741 (818)
Q Consensus 703 ~-~-~-~i~~~l~------~~----~~-----------~~~---------------~~l~~~l~~~--~~v~~vrg~Gl~ 741 (818)
+ + + ++++.+. .. .. .+. +.+.+.|++. +.+...++. .
T Consensus 277 ~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~ 354 (467)
T 1ax4_A 277 AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGH--A 354 (467)
T ss_dssp EESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSS--E
T ss_pred EeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCCcccCCCce--E
Confidence 4 5 4 6654321 00 00 010 1123334332 222223333 3
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHH-HhCCceEeec-----------C-------CEEEEECC-CCChHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKL-REDGVYMRPL-----------G-------NVIYLMCG-PCSSPEVCSQLLLKL 801 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gvlv~p~-----------g-------~~ir~~pp-l~~t~edId~~~~~l 801 (818)
+-+.+..-..........+..+++.| .++||.+.+. | +.+||++| .++|++||++++++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l 434 (467)
T 1ax4_A 355 VFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADAL 434 (467)
T ss_dssp EEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHH
T ss_pred EEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHH
Confidence 33331100000000011356788888 8999999872 2 68999999 569999999999999
Q ss_pred HHHHHHHH
Q 003466 802 YQRLEEFD 809 (818)
Q Consensus 802 ~~~l~~l~ 809 (818)
.+++++++
T Consensus 435 ~~~~~~~~ 442 (467)
T 1ax4_A 435 IGLKEKFA 442 (467)
T ss_dssp HTTHHHHT
T ss_pred HHHHHhhh
Confidence 99987754
No 103
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.75 E-value=2.6e-17 Score=183.96 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=191.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh--h-cccccC-----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--R-FGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~--~-~~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGs 471 (818)
-|||+.++ |+. +|+|++|+.+++. + ++.... .....+...++.++|+++++.+ .+.++|+++|+
T Consensus 24 iyld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSAT------TPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTTC------CCC-CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCCc------CCC-CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 68887652 577 9999999999988 3 221110 0011345678999999988743 35899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
+|++.|++.+.+++. ..| ..|++.+.+||+.......+ .|...
T Consensus 96 ~a~~~a~~~l~~~~~-~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~~------------------ 140 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-KKG----------------KHIITSKTEHKAVLDTCRQLEREGFEV------------------ 140 (423)
T ss_dssp HHHHHHHHHHHHHHT-TTC----------------CEEEEETTSCHHHHHHHHHHHHTTCEE------------------
T ss_pred HHHHHHHHHHHHhhc-cCC----------------CEEEECCccchHHHHHHHHHHHcCCEE------------------
Confidence 999999998744332 222 47888888888754332222 11110
Q ss_pred CCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003466 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~ 629 (818)
..++....+ ..| .+.|++.+. .++++|+++++
T Consensus 141 ----------~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~- 172 (423)
T 3lvm_A 141 ----------TYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV- 172 (423)
T ss_dssp ----------EEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-
T ss_pred ----------EEeccCCCC-----------ccC------------------HHHHHHhcC--------CCcEEEEEeCC-
Confidence 011111000 001 255666664 36789999997
Q ss_pred ccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH
Q 003466 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i 707 (818)
++..|.+.+ +++|+++|++||+++|+||+++ +|... .......+|+++++ |.+| + .++|++++++++
T Consensus 173 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~----~~~~~~~~di~~~s~sK~~g-~-~g~G~~~~~~~~ 241 (423)
T 3lvm_A 173 NNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP----IDLSQLKVDLMSFSGHKIYG-P-KGIGALYVRRKP 241 (423)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTSCCSEEEEESTTTTS-C-SSCEEEEECBTT
T ss_pred CCCCccccC----HHHHHHHHHHcCCEEEEEhhhh-cCCCC----cChhhcCCCEEEechHHhcC-C-CCeEEEEEeccc
Confidence 888998886 9999999999999999999995 33321 22233458999877 9544 3 468999998877
Q ss_pred HhhccCC-------------hH-------------HHH--------------HHHHHHHHcCCCeeEEEe----eeeEEE
Q 003466 708 FDSFVGD-------------SK-------------LWD--------------LELIQQISSHRTVQRVVA----LGTLCA 743 (818)
Q Consensus 708 ~~~l~~~-------------~~-------------~~~--------------~~l~~~l~~~~~v~~vrg----~Gl~~~ 743 (818)
.+.+... .. .+. +.+.+.+++++.+.-+.. .+.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 321 (423)
T 3lvm_A 242 RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN 321 (423)
T ss_dssp BCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEE
T ss_pred cCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE
Confidence 6554321 00 010 123344455554432221 235666
Q ss_pred EEEecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHH
Q 003466 744 IELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 744 iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~ 799 (818)
+.+... .+..+.+.|.+ +.+.++ ++.+|+.++..+|++||+++++
T Consensus 322 ~~~~~~---------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~ 390 (423)
T 3lvm_A 322 VSFNYV---------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIE 390 (423)
T ss_dssp EEETTS---------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred EEeCCC---------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHH
Confidence 666321 14456666665 666542 3789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003466 800 KLYQRLEEFDK 810 (818)
Q Consensus 800 ~l~~~l~~l~~ 810 (818)
+|+++++++.+
T Consensus 391 ~l~~~~~~~~~ 401 (423)
T 3lvm_A 391 LVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 99999988864
No 104
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.74 E-value=1.7e-17 Score=188.45 Aligned_cols=321 Identities=12% Similarity=0.008 Sum_probs=184.6
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.+++++ |+|.+|+.+++..... . ....+...+|+++|+++++ .++++|++||++|++.|++
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE-A--YSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC-C--SSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc-e--eccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHHH
Confidence 89999876554 7889999888764221 1 1234567899999999987 3799999999999999999
Q ss_pred HHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCcccccccc-CCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 480 MAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 480 lA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t-g~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++ +..+ ...|. +++..||.. .||+.+..+.... +....... .. ..+ +.
T Consensus 108 ~~-~~~~~~~~G~------------~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~------~~--~~~--~~----- 157 (467)
T 2oqx_A 108 VL-IKKREQEKGL------------DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVY------IK--EAF--DT----- 157 (467)
T ss_dssp HH-HHHHHHHHCC------------CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECB------CT--TTT--CT-----
T ss_pred HH-hccccccCCC------------CccceEEec--ccccccchhhhhccCcceeecc------cc--ccc--cC-----
Confidence 98 3321 11120 110246654 6998764443322 11100000 00 000 00
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
. ...|..+ ..| .+.|++.|.+ .+.+++++|++|++ ++.+|..+
T Consensus 158 ~---~~~~~~~-----------~~d------------------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~~ 200 (467)
T 2oqx_A 158 G---VRYDFKG-----------NFD------------------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQP 200 (467)
T ss_dssp T---SCCTTTT-----------CBC------------------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBC
T ss_pred C---CCCCccC-----------CcC------------------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCcc
Confidence 0 0000000 011 2567777763 11247899999997 77764566
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccC----------cccCCc---cchhcccCCCCcE--EEecccccCCcccccee-
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGV---ETTADLLGCVPDI--ACYGKLLTGGVIPLAAT- 701 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TG----------fGRtG~---~~a~e~~gv~PDi--vtlgKgLggGy~PlsAv- 701 (818)
++.+++++|+++|++||++||+|++|.. .+..|. .++.+.+ -.+|+ .+++|++| +|+|++
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~ 276 (467)
T 2oqx_A 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGLL 276 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceEE
Confidence 6899999999999999999999976632 133343 2221100 11444 57889884 365554
Q ss_pred ecchH----HHhhcc------C----ChH-----------HHH---------------HHHHHHHHcCCCeeEEEeeeeE
Q 003466 702 LATNA----VFDSFV------G----DSK-----------LWD---------------LELIQQISSHRTVQRVVALGTL 741 (818)
Q Consensus 702 l~~~~----i~~~l~------~----~~~-----------~~~---------------~~l~~~l~~~~~v~~vrg~Gl~ 741 (818)
+++++ .+..+. . .+. .+. +.+.+.|++.+. .-+...|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 355 (467)
T 2oqx_A 277 CMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV-VCQQAGGHA 355 (467)
T ss_dssp EECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred EecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCC-eeecCCceE
Confidence 45544 222111 0 000 000 112333444322 111223445
Q ss_pred EEEEEec--CcccCCCchHH-HHHHHHHH-HhCCceEeecC------------------CEEEEECCCC-ChHHHHHHHH
Q 003466 742 CAIELQA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPLG------------------NVIYLMCGPC-SSPEVCSQLL 798 (818)
Q Consensus 742 ~~iel~~--~~~~~~~~~~~-a~~~~~~l-~e~Gvlv~p~g------------------~~ir~~ppl~-~t~edId~~~ 798 (818)
+.+.+.. .. . ..... +..+++.| .++||++.+.+ +.+|+.++.. +|++||++++
T Consensus 356 ~~~~~~~~~~~--~-~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~ 432 (467)
T 2oqx_A 356 AFVDAGKLLPH--I-PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFII 432 (467)
T ss_dssp EEEEHHHHSTT--S-CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHH
T ss_pred EEEechhhccc--C-CcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHH
Confidence 5555532 10 0 01122 55678888 89999998732 6899999999 9999999999
Q ss_pred HHHHHHHHHHH
Q 003466 799 LKLYQRLEEFD 809 (818)
Q Consensus 799 ~~l~~~l~~l~ 809 (818)
++|+++++++.
T Consensus 433 ~~l~~~l~~~~ 443 (467)
T 2oqx_A 433 EAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHSGG
T ss_pred HHHHHHHhhhh
Confidence 99999987654
No 105
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.74 E-value=4.7e-17 Score=178.56 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=186.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCC--CcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l--~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|+|.+|+.+++..... ....+...++.++|+++++.+ . +.++|+++|++|++ +++.+ . ..
T Consensus 14 ~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~---~--~~------ 76 (384)
T 3zrp_A 14 KEDVLVAGLENNVGFTS----KEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSL---L--KP------ 76 (384)
T ss_dssp CHHHHHHTTCCSCCTTS----HHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGG---C--CT------
T ss_pred CHHHHHHhhcccccccc----HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhh---c--CC------
Confidence 79999999887653211 112456778899999988743 2 56999999999999 88754 1 11
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
..+||+.+.+|||.....+ ...|.. ...++.+..+
T Consensus 77 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 112 (384)
T 3zrp_A 77 ----------NDKILVVSNGVFGDRWEQIFKRYPVN----------------------------VKVLRPSPGD------ 112 (384)
T ss_dssp ----------TCEEEEECSSHHHHHHHHHHTTSSCE----------------------------EEEECCSTTC------
T ss_pred ----------CCEEEEecCCcchHHHHHHHHHcCCc----------------------------EEEecCCCCC------
Confidence 2479999999998543322 111111 0111111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++||
T Consensus 113 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 157 (384)
T 3zrp_A 113 -----YVK------------------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKYV 157 (384)
T ss_dssp -----CCC------------------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGGE
T ss_pred -----CCC------------------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhcC
Confidence 011 2567777762 35889999997 899998886 999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhc-c-------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF-V------------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l-~------------------- 712 (818)
+++|+||+++ +|... ..... ..+|+++++ |+++|+ .++|++++++++++.+ .
T Consensus 158 ~~li~D~a~~-~~~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (384)
T 3zrp_A 158 ELIVVDGVSS-VGAEE--VKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMR 231 (384)
T ss_dssp EEEEEECTTT-TTTSC--CCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHH
T ss_pred CEEEEECccc-ccCcc--ccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 9999999995 33221 11122 247888665 999887 5789999999887655 0
Q ss_pred -----------CChH-----------HH---------------HHHHHHHHHcCCC-e-eE--EEeeeeEEEEEEecCcc
Q 003466 713 -----------GDSK-----------LW---------------DLELIQQISSHRT-V-QR--VVALGTLCAIELQAAGC 751 (818)
Q Consensus 713 -----------~~~~-----------~~---------------~~~l~~~l~~~~~-v-~~--vrg~Gl~~~iel~~~~~ 751 (818)
.... .+ .+.+.+.+++++. + .. ....+.++.+.+...
T Consensus 232 ~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 309 (384)
T 3zrp_A 232 GAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVA-- 309 (384)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSSS--
T ss_pred hhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCCC--
Confidence 1000 00 0122334444421 1 10 112356666666432
Q ss_pred cCCCchHHHHHHHHHHHhCCceEeecC----CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRPLG----NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p~g----~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+..+.+.|.++||+++++. +.+|+.++..+|++|+++++++|+++++++.
T Consensus 310 -------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 310 -------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp -------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 25578899999999999876 7899999999999999999999999998764
No 106
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.73 E-value=9.8e-17 Score=176.40 Aligned_cols=295 Identities=13% Similarity=0.057 Sum_probs=193.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|+|..+ .++. +|++.+|+.+++.. +.. ....+...+++++|++++|.+..+.+++++||++|++.+++
T Consensus 21 ~~l~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 21 YKLFTAG------PVAC-FPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp SEECCSS------SCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred ceeecCC------CcCC-cHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 5666543 4566 89999999887753 111 01256788999999998874212468999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.+. +.| .+|++.+.+|||.+.. .+...|...
T Consensus 90 ~l~-----~~g----------------d~vl~~~~~~~~~~~~~~~~~~g~~~--------------------------- 121 (386)
T 2dr1_A 90 NGV-----SKG----------------GKVLVTIIGAFGKRYKEVVESNGRKA--------------------------- 121 (386)
T ss_dssp HHS-----CTT----------------CEEEEEESSHHHHHHHHHHHHTTCEE---------------------------
T ss_pred Hhh-----cCC----------------CeEEEEcCCchhHHHHHHHHHhCCce---------------------------
Confidence 761 122 4799999999984221 111112110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.+..+ ..| .+.|++.+++ ..++++|++++. ++..|.+.+
T Consensus 122 -~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 164 (386)
T 2dr1_A 122 -VVLEYEPGK-----------AVK------------------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP 164 (386)
T ss_dssp -EEEECCTTC-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC
T ss_pred -EEEecCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC
Confidence 011111000 012 2567777752 235788999987 888898875
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC---
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG--- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~--- 713 (818)
+++|.++|++||+++|+||+++ +|... +.... ..+|+++.| |.++++ .++|++++++++++.+..
T Consensus 165 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~ 234 (386)
T 2dr1_A 165 ----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFDK--WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPE 234 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTTT--TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-ccCcc--ccccc--cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCC
Confidence 8999999999999999999995 44332 22222 246998777 999976 368999999988765421
Q ss_pred ---------------------ChH-------------HHH----------------HHHHHHHHcCCCeeEEEe----ee
Q 003466 714 ---------------------DSK-------------LWD----------------LELIQQISSHRTVQRVVA----LG 739 (818)
Q Consensus 714 ---------------------~~~-------------~~~----------------~~l~~~l~~~~~v~~vrg----~G 739 (818)
... .+. +.+.+.+++++. .-+.. .|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~ 313 (386)
T 2dr1_A 235 RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGL-DILAEPGHESP 313 (386)
T ss_dssp CCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTC-CBSSCTTCBCS
T ss_pred CceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eeCcCccccCC
Confidence 000 110 012233343321 11111 46
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.++.+.+... ..+..+++.|.++||++.+. ++.+|+.++..+|++|+++++++|+++++++.
T Consensus 314 ~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 314 TITAVLTPPG--------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp SEEEEECCTT--------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCC--------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6777776422 12557889999999999873 37999999998999999999999999988764
No 107
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.73 E-value=8.7e-17 Score=174.82 Aligned_cols=296 Identities=11% Similarity=0.044 Sum_probs=182.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+|||.++ +.++. +|+|++|+.+++.. +.. .....+...+++++|+++++. -..++|+++|++|++.|++
T Consensus 8 ~~id~~~~----~~~~~-~~~v~~a~~~~~~~--~~~-~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 8 PALGFSSD----NIAGA-SPEVAQALVKHSSG--QAG-PYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCBCSCG----GGCCC-CHHHHHHHHHTTSS--CCC-STTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHHH
T ss_pred ceEeeccC----CccCC-CHHHHHHHHhhccC--ccc-ccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHHH
Confidence 68999874 44778 99999999998743 211 112357788999999999873 2358999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc--cccc--CCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a--ls~t--g~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+ + .. .+.|.....+|+.+..+ +... |...
T Consensus 78 ~~-~----~~-----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~~------------------------ 111 (356)
T 1v72_A 78 AM-T----PP-----------------WGNIYCHPASHINNDECGAPEFFSNGAKL------------------------ 111 (356)
T ss_dssp TS-C----CT-----------------TEEEEECTTSHHHHSSTTHHHHHTTSCEE------------------------
T ss_pred Hh-c----CC-----------------CCEEEEcCccchhhhhchHHHHHhCCcEE------------------------
Confidence 76 1 11 23444556677765544 3332 2210
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~-~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
+.+|.... ..| .+.+++ .+.+.. ..+..++++|++++. +. .|
T Consensus 112 ------~~v~~~~~----------~~d------------------~~~l~~~~i~~~~-~~~~~~~~~v~~~~~-~~-tG 154 (356)
T 1v72_A 112 ------MTVDGPAA----------KLD------------------IVRLRERTREKVG-DVHTTQPACVSITQA-TE-VG 154 (356)
T ss_dssp ------EECCCGGG----------CCC------------------HHHHHHHTTSSTT-CTTSCEEEEEEEESS-CT-TS
T ss_pred ------EEecCCCC----------eEc------------------HHHHHHHhhhcch-hhccCCceEEEEEcC-CC-CC
Confidence 11110000 011 255666 664200 012237899999995 64 77
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCccc--CCccchhcccC--CCCcEEE--ecccccCCccccc--eeecchH
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIAC--YGKLLTGGVIPLA--ATLATNA 706 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR--tG~~~a~e~~g--v~PDivt--lgKgLggGy~Pls--Avl~~~~ 706 (818)
.+ +|.+++++|.++|++||+++|+||++..++- .|.. ...++ ...|+++ ++|+ | .|+| +++++++
T Consensus 155 ~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~~ 227 (356)
T 1v72_A 155 SI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNTS 227 (356)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSGG
T ss_pred cc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECHH
Confidence 65 5899999999999999999999999964311 1211 11112 1356654 6787 3 3888 5666887
Q ss_pred HHhhccC-----C-----hH-------------HHH----------HHHHHHHHcCCCeeEEE-eeeeEEEEEEecCccc
Q 003466 707 VFDSFVG-----D-----SK-------------LWD----------LELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN 752 (818)
Q Consensus 707 i~~~l~~-----~-----~~-------------~~~----------~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~ 752 (818)
+++.+.. + .. .+. +.+.+.+++.+.+.-+. ..+.++.+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----- 302 (356)
T 1v72_A 228 LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----- 302 (356)
T ss_dssp GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----
T ss_pred HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-----
Confidence 7654311 0 10 000 11233344444332221 12333333331
Q ss_pred CCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 753 AGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
..+++.|.++||++.++ ++.+|+.+++.+|++|+++++++|++++++.
T Consensus 303 --------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 --------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp --------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred --------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 15788899999999863 4789999999999999999999999887654
No 108
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.73 E-value=2.9e-16 Score=174.98 Aligned_cols=297 Identities=14% Similarity=0.069 Sum_probs=192.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccC----CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~----~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||+.+ .|+. +|+|.+|+.++++.. +.... .....+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 30 ~yld~~~------~~~~-~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCCC-cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 7888754 4678 999999999999753 21110 0012366789999999998753 35899999999999
Q ss_pred HHHHHHHHHHhh-hcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 475 EIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 475 e~ALklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+.|++.+++... +..| .++|.....+|+++..++...... ... |
T Consensus 102 ~~al~~~~~~~~~~~~g----------------d~vii~~~~~~~~~~~~~~~~~~~-~~~----------g-------- 146 (416)
T 1qz9_A 102 FKVLSAALRVQATRSPE----------------RRVIVTETSNFPTDLYIAEGLADM-LQQ----------G-------- 146 (416)
T ss_dssp HHHHHHHHHHHHHHSTT----------------CCEEEEETTSCHHHHHHHHHHHHH-HCS----------S--------
T ss_pred HHHHHhhcccccccCCC----------------CcEEEEcCCCCCchHHHHHHHHHH-hcC----------C--------
Confidence 999998732110 0111 246777888998765543211000 000 0
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
...+.+| + .+.+++.+. .++++|+++++ ++..
T Consensus 147 -----~~~~~v~--------------~--------------------~~~l~~~i~--------~~~~~v~~~~~-~npt 178 (416)
T 1qz9_A 147 -----YTLRLVD--------------S--------------------PEELPQAID--------QDTAVVMLTHV-NYKT 178 (416)
T ss_dssp -----CEEEEES--------------S--------------------GGGHHHHCS--------TTEEEEEEESB-CTTT
T ss_pred -----ceEEEeC--------------c--------------------HHHHHHHhC--------CCceEEEEecc-ccCc
Confidence 0000011 0 033555553 36789999997 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcccc-ceeecchHHHhh
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL-AATLATNAVFDS 710 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~Pl-sAvl~~~~i~~~ 710 (818)
|.+.+ +++|.++|++||+++|+||+++ +|.... ....+ .+|+++++ |.+++| .++ |++++++++++.
T Consensus 179 G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~~--~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~~~ 248 (416)
T 1qz9_A 179 GYMHD----MQALTALSHECGALAIWDLAHS-AGAVPV--DLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLCDL 248 (416)
T ss_dssp CBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSCC--CHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTTTT
T ss_pred ccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcCC--Chhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHHhc
Confidence 98876 8999999999999999999995 655432 22233 37998775 999887 476 999999887654
Q ss_pred ccCC-----------------------------hH-------------HH---------------HHHHHHHHHcC-C--
Q 003466 711 FVGD-----------------------------SK-------------LW---------------DLELIQQISSH-R-- 730 (818)
Q Consensus 711 l~~~-----------------------------~~-------------~~---------------~~~l~~~l~~~-~-- 730 (818)
+... .. .+ .+.+.+.|++. +
T Consensus 249 l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 328 (416)
T 1qz9_A 249 VPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAH 328 (416)
T ss_dssp SCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4320 00 00 01223344432 2
Q ss_pred CeeEEE-----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEECC-CCChHHHHHHHHHHHHH
Q 003466 731 TVQRVV-----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMCG-PCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 731 ~v~~vr-----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~pp-l~~t~edId~~~~~l~~ 803 (818)
.+.-+. ..+.++.+.+.. +..+.+.|.++||++... .+.+|+.++ +.+|++|+++++++|.+
T Consensus 329 g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 329 ELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp CCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 221111 135566665531 456888999999998764 589999997 68999999999999999
Q ss_pred HHHHH
Q 003466 804 RLEEF 808 (818)
Q Consensus 804 ~l~~l 808 (818)
++++.
T Consensus 398 ~~~~~ 402 (416)
T 1qz9_A 398 ILDRK 402 (416)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98764
No 109
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.73 E-value=1.3e-16 Score=174.92 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=190.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.+||+.++. +.++ . +|+|++|+.++++...... .+...+|.++|+++++-. .+.++++++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNE--NPFG-T-PPKAIECLRQNANKAHLYP-----DDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCC--CTTC-S-CHHHHHHHHHHGGGTTSCC-----CTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhccCC-----CCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 799998854 3466 5 8999999999987543221 222257888888877632 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... ..| .+|++...+|++....+ ...|..
T Consensus 101 ~l~-----~~g----------------d~vl~~~~~~~~~~~~~-~~~g~~----------------------------- 129 (365)
T 3get_A 101 SKL-----NSK----------------NAFLQAGVTFAMYEIYA-KQCGAK----------------------------- 129 (365)
T ss_dssp HHC-----CTT----------------CEEEECSSCCTHHHHHH-HHHTCE-----------------------------
T ss_pred HHh-----CCC----------------CEEEEeCCChHHHHHHH-HHcCCE-----------------------------
Confidence 761 222 37888888887644322 222211
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.+.+| ..+ .+ .. ..+.+++.+. .++.+|+++.. ++..|.+. |
T Consensus 130 -~~~v~--------------~~~--------~~--~~---d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 130 -CYKTQ--------------SIT--------HN--LD---EFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp -EEECS--------------SSS--------CC--HH---HHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred -EEEEe--------------cCC--------CC--CC---CHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 00111 000 00 00 1256666663 45778887654 67778776 6
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcc---cCCcc-chh---cccCCCCcEEEeccccc-CCccccceeecchHHHhhc
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFW---RLGVE-TTA---DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfG---RtG~~-~a~---e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
.+.++++.++| ++|+++|+||++++|. ..+.. ... ..++....+.+++|.+| .| +++|++++++++++.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66777777777 6799999999998775 32221 122 22343344558999997 67 7999999999988765
Q ss_pred cCCh------H------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHH
Q 003466 712 VGDS------K------------------------LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 712 ~~~~------~------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
.... . ...+.+.+.++++ .+..+...|.++.+.+... .+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~---------~~~ 319 (365)
T 3get_A 250 YKLRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTNFITYFFDEK---------NST 319 (365)
T ss_dssp HHHSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECSSS---------CHH
T ss_pred HHhcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEECCCC---------CHH
Confidence 3210 0 0112234445555 3334456677776666431 155
Q ss_pred HHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+.+.|.++||++.++ .+.+|+... +++|+++++++|++++
T Consensus 320 ~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 320 DLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 7889999999999985 388999976 8999999999998875
No 110
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.73 E-value=3.1e-16 Score=174.45 Aligned_cols=319 Identities=10% Similarity=0.028 Sum_probs=192.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccCCC-CC-CcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~l-~~v~f~~SGseA~e 475 (818)
.+||+..|. ..++ . +|+|.+|+.+++++... +....+..+...++++.+.+..+.. .. +.++++++|++|++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGF--PDIS-P-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCC--CCSC-C-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCC--CCCC-C-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 677877654 2233 3 89999999999875421 1111123455666666666543321 02 58999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.+. ..| .+|++...+||+.... +...|....
T Consensus 100 ~~~~~~~-----~~g----------------d~vl~~~p~~~~~~~~-~~~~g~~~~----------------------- 134 (410)
T 3e2y_A 100 NSIQGLV-----DPG----------------DEVIIMVPFYDCYEPM-VRMAGAVPV----------------------- 134 (410)
T ss_dssp HHHHHHC-----CTT----------------CEEEEEESCCTTHHHH-HHHTTCEEE-----------------------
T ss_pred HHHHHhc-----CCC----------------CEEEEeCCCchhhHHH-HHHcCCEEE-----------------------
Confidence 9999761 122 3788899999875432 222222110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
.+++...... + ....+..+. -+ .+.+++.+. .++++|+++.. ++..|.
T Consensus 135 -----~~~~~~~~~~--g------~~~~~~~~~--~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 135 -----FIPLRSKPTD--G------MKWTSSDWT--FD--------PRELESKFS--------SKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp -----EEECEECCCC--S------SCCBGGGEE--CC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred -----EEeccccccc--c------ccccccCCc--CC--------HHHHHhhcC--------CCceEEEEeCC-CCCCCc
Confidence 0000000000 0 000000000 00 144554442 36888999986 888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccc-hhccc----CCCCcEEEeccccc-CCccccceeecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~-a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~ 709 (818)
+. +++.+++|.++|++||+++|+||++++|++.|+.+ ....+ +...++.++||.+| +| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 76 78889999999999999999999999998888633 22222 22344568899998 78 79999999998877
Q ss_pred hccCChH----------------HHH------------------------HHHHHHHHcCCCeeEEEeeeeEEEEEEecC
Q 003466 710 SFVGDSK----------------LWD------------------------LELIQQISSHRTVQRVVALGTLCAIELQAA 749 (818)
Q Consensus 710 ~l~~~~~----------------~~~------------------------~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~ 749 (818)
.+..... .+. +.+.+.+++++........|.++.+++...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 340 (410)
T 3e2y_A 261 HLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSL 340 (410)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGG
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhh
Confidence 5532100 111 112344555543323345567777776542
Q ss_pred cccCC---CchHHHHHHHHHHH-hCCceEeec------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 750 GCNAG---YGSLYAASLLKKLR-EDGVYMRPL------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 750 ~~~~~---~~~~~a~~~~~~l~-e~Gvlv~p~------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
..... .+......++..++ ++||++.|+ .+.+|++. .+++++|++++++|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 341 GADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHHHHHHHHT
T ss_pred hcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHh
Confidence 11000 00112345666554 679999872 26788885 4599999999998864
No 111
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.72 E-value=2.6e-17 Score=182.28 Aligned_cols=305 Identities=12% Similarity=0.065 Sum_probs=181.0
Q ss_pred CCcCccccceeecccccccccCC--CCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCC-C----CCCcE
Q 003466 392 DQKNKFIGQQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK-G----WASRA 464 (818)
Q Consensus 392 ~dG~~~~~~ylD~~sg~~~~~lG--h~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~-~----~l~~v 464 (818)
..|+ .+||+.+|.+.+..| +. +|+|.+|+.+++++.....+ .......+|.+.|++++.. + ..+.+
T Consensus 23 ~~~~----~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~~v 95 (396)
T 2q7w_A 23 DERP----GKINLGIGVYKDETGKTPV-LTSVKKAEQYLLENETTKNY--LGIDGIPEFGRCTQELLFGKGSALINDKRA 95 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCCCC--CCTTCCHHHHHHHHHHHHCTTCHHHHTTCE
T ss_pred cCCC----CceecccccccCCCCCccC-cHHHHHHHHhhcCcccccCC--CCCCCCHHHHHHHHHHHhcCCCCccccccE
Confidence 3466 899999998777766 56 79999999998765311111 1122234555555554411 0 02578
Q ss_pred EE--eCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCccc
Q 003466 465 YF--SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (818)
Q Consensus 465 ~f--~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~ 542 (818)
+| +++|++|++.+++++ +.+. .| .+|++.+.+||+....+... |...
T Consensus 96 ~~~~~~g~~~a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~y~~~~~~~~~~-g~~~----------- 144 (396)
T 2q7w_A 96 RTAQTPGGTGALRVAADFL-AKNT--SV----------------KRVWVSNPSWPNHKSVFNSA-GLEV----------- 144 (396)
T ss_dssp EEEEESHHHHHHHHHHHHH-HHHS--CC----------------CEEEEEESCCTHHHHHHHHT-TCEE-----------
T ss_pred EEEecccchhhHHHHHHHH-HHhC--CC----------------CEEEEcCCCchhHHHHHHHc-CCce-----------
Confidence 88 999999999999987 3332 22 37999999999865433222 2110
Q ss_pred CCCcccCCCcccccCcceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 003466 543 GRGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (818)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i 620 (818)
..++.. +.+ -.| .+.+++.+.+ ...+.
T Consensus 145 -----------------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~ 173 (396)
T 2q7w_A 145 -----------------REYAYYDAENH-----------TLD------------------FDALINSLNE-----AQAGD 173 (396)
T ss_dssp -----------------EEEECEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTC
T ss_pred -----------------EEEecccCCCC-----------CcC------------------HHHHHHHHHh-----CCCCC
Confidence 001110 000 001 2567777752 22234
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhcccCCCCc----EEEeccccc-C
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-G 693 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~~gv~PD----ivtlgKgLg-g 693 (818)
.++++... ++..|.+ .+.+++++|.++|++||+++|+||++++|++.| .++....++..+| +.+++|++| .
T Consensus 174 ~~v~~~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 251 (396)
T 2q7w_A 174 VVLFHGCC-HNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY 251 (396)
T ss_dssp EEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred EEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc
Confidence 55555443 6777775 488999999999999999999999999997765 3334443332334 448999999 7
Q ss_pred Cccccceeec---ch----HHHhhccC-------C-hH--------HH---------H--------------HHHHHHHH
Q 003466 694 GVIPLAATLA---TN----AVFDSFVG-------D-SK--------LW---------D--------------LELIQQIS 727 (818)
Q Consensus 694 Gy~PlsAvl~---~~----~i~~~l~~-------~-~~--------~~---------~--------------~~l~~~l~ 727 (818)
| +++|++++ ++ ++++.+.. . .. .+ . +.+.+.++
T Consensus 252 G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (396)
T 2q7w_A 252 N-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQ 330 (396)
T ss_dssp G-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred c-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999986 45 45443211 0 10 11 0 11223344
Q ss_pred cCC---CeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 728 SHR---TVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 728 ~~~---~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+++ .+.-+. ..|+++.+.+. ...+.+.|.++||++.++ +|+.++. +|++++++++++|++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~e~i~~~~~~l~~ 394 (396)
T 2q7w_A 331 EKGANRDFSFIIKQNGMFSFSGLT------------KEQVLRLREEFGVYAVAS---GRVNVAG-MTPDNMAPLCEAIVA 394 (396)
T ss_dssp HTTCCSCCTHHHHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGGG-CCTTTHHHHHHHHHH
T ss_pred hcCCCCCcceecCCCceEEEecCC------------HHHHHHHHHhcCeeecCC---ceEEEee-cCHHHHHHHHHHHHh
Confidence 443 121111 23444333221 124556677899999874 5888875 489999999999987
Q ss_pred H
Q 003466 804 R 804 (818)
Q Consensus 804 ~ 804 (818)
+
T Consensus 395 ~ 395 (396)
T 2q7w_A 395 V 395 (396)
T ss_dssp H
T ss_pred c
Confidence 5
No 112
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.72 E-value=5.2e-17 Score=181.23 Aligned_cols=311 Identities=9% Similarity=-0.002 Sum_probs=183.6
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHHhhhhcccccCCCC-CChhHHHHHHHHHhccCCC-----CCCcEEE--eCCh
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~q~~~~~~~~~~~~-~~~~~~eLae~L~~~~~~~-----~l~~v~f--~~SG 470 (818)
.+||+.+|...+..|+. ..|.|.+|+.+++....... .+ ......+|.+.|+++++.. ..+.++| +++|
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNH--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhcc--CCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 89999988765555553 14899999999873211110 11 1222345555555554210 1268999 9999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCC-CCCCcCCCCcccCCCcccC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~-~~~~~~~~p~~~~~~~~~~ 549 (818)
++|++.+++++ +.+. .|. ...+.+|++...+||+....+... |.. ..
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~-----------~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~----------------- 156 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGT-----------NNKDTPVYVSSPTWENHNGVFTTA-GFKDIR----------------- 156 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSS-----------SCCCSCEEEEESCCTHHHHHHHHT-TCSCEE-----------------
T ss_pred HHHHHHHHHHH-HHhC--cCc-----------CCCCCeEEEcCCCcHHHHHHHHHc-CCceeE-----------------
Confidence 99999999876 3332 120 000137999999999865333222 111 00
Q ss_pred CCcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 550 PPTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
.++. ++.+ -.| .+.+++.+.+ ...+..++++..
T Consensus 157 -----------~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~~~~ 191 (412)
T 1ajs_A 157 -----------SYRYWDTEKR-----------GLD------------------LQGFLSDLEN-----APEFSIFVLHAC 191 (412)
T ss_dssp -----------EEECEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEESS
T ss_pred -----------EEeeecCCCC-----------ccC------------------HHHHHHHHHh-----CCCCcEEEEECC
Confidence 0111 0000 001 2556666753 123445554444
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC---ccchhcccCCCCc----EEEecccccC-Cccccc
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLA 699 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG---~~~a~e~~gv~PD----ivtlgKgLgg-Gy~Pls 699 (818)
. ++..|.+ ++.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|++|. | +++|
T Consensus 192 p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 268 (412)
T 1ajs_A 192 A-HNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVG 268 (412)
T ss_dssp S-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred C-CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceE
Confidence 3 5666764 589999999999999999999999999999887 4444443332455 5589999997 8 7999
Q ss_pred eeec---chH----HHhhccC------C--hH--------HH---------H---H-----------HHHHHHHcCC---
Q 003466 700 ATLA---TNA----VFDSFVG------D--SK--------LW---------D---L-----------ELIQQISSHR--- 730 (818)
Q Consensus 700 Avl~---~~~----i~~~l~~------~--~~--------~~---------~---~-----------~l~~~l~~~~--- 730 (818)
++++ +++ +++.+.. . .. .+ . + .+.+.+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (412)
T 1ajs_A 269 NLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPG 348 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 9998 776 3332211 0 00 11 1 1 1223344443
Q ss_pred CeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 731 TVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 731 ~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.-+.. .|++.-+.+. ...+...+.++||++.+. +|+.... +|++++++++++|+++++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gv~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 349 TWNHITDQIGMFSFTGLN------------PKQVEYLINQKHIYLLPS---GRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CCHHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTT---SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred CeeEEcCCCceEEEeCCC------------HHHHHHHHHhCCEEecCC---cEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 1211122 2333322111 223445566899999875 4777663 58999999999999988653
No 113
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.72 E-value=2.7e-17 Score=181.10 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=184.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|+|.+|+.+++.. +.. ....+...++.++|+++++.+..+.++|+++|++|++.|++.+. ..
T Consensus 35 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----~~-------- 97 (393)
T 3kgw_A 35 APRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----EP-------- 97 (393)
T ss_dssp CHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----CC--------
Confidence 79999999876532 111 01235667889999998875422358999999999999999761 12
Q ss_pred CCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
..+||+...+|||.... .....|... ..++.+...
T Consensus 98 --------gd~vl~~~~~~~~~~~~~~~~~~g~~~----------------------------~~~~~~~~~-------- 133 (393)
T 3kgw_A 98 --------GDSFLTGTNGIWGMRAAEIADRIGARV----------------------------HQMIKKPGE-------- 133 (393)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHTTCEE----------------------------EEEECCTTC--------
T ss_pred --------CCEEEEEeCCchhHHHHHHHHHcCCce----------------------------EEEeCCCCC--------
Confidence 23788888888764321 112222110 011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+.+ .++++|++++. ++..|.+.+ +++|+++|++||++
T Consensus 134 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 180 (393)
T 3kgw_A 134 ---HYT------------------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQCL 180 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCCE
Confidence 011 2567777752 25679999997 899998876 88999999999999
Q ss_pred EEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC--------------------
Q 003466 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD-------------------- 714 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~-------------------- 714 (818)
+|+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+...
T Consensus 181 li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 3kgw_A 181 LLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGC 254 (393)
T ss_dssp EEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTC
T ss_pred EEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhh
Confidence 99999995 33 2233333333 5777666 999887 5799999999987765320
Q ss_pred -----------hH-----------HH---------------HHHHHHHHHcCCC-ee--E-EEeeeeEEEEEEecCcccC
Q 003466 715 -----------SK-----------LW---------------DLELIQQISSHRT-VQ--R-VVALGTLCAIELQAAGCNA 753 (818)
Q Consensus 715 -----------~~-----------~~---------------~~~l~~~l~~~~~-v~--~-vrg~Gl~~~iel~~~~~~~ 753 (818)
.. .+ .+.+.+.+++.+. +. . ....+.+..+.+...
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 330 (393)
T 3kgw_A 255 EGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAG---- 330 (393)
T ss_dssp SSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTT----
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCC----
Confidence 00 00 0122334444432 10 0 112345666666432
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||+++++ ++.+|+.+ +..+|++|+++++++|+++++++.
T Consensus 331 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 331 ----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp ----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 1255788899988 9999863 47999998 777899999999999999987653
No 114
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.72 E-value=2e-17 Score=183.21 Aligned_cols=301 Identities=12% Similarity=0.040 Sum_probs=181.5
Q ss_pred ceeecccccccccCC--CCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc-CCC-CCCcEEE--eCChhHH
Q 003466 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKG-WASRAYF--SDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lG--h~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~-~~~-~l~~v~f--~~SGseA 473 (818)
.+||+.+|.+.+..| +. +|+|.+|+.+++++.....+. ......+|.+.|++++ +.+ ..++++| +++|++|
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPI-MRAVHAAEQRMLETETTKTYA--GLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp TCEECCCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCCCCC--CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred cccccccceeeCCCCCccC-cHHHHHHHHHhcCCcccCCCC--CCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 799999988766666 66 899999999987652111110 1112234445554443 210 1368999 9999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
++.+++++ +.+. .| .+|++...+||+....+... |...
T Consensus 104 ~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~~~-g~~~---------------------- 141 (394)
T 2ay1_A 104 LRQALELA-RMAN--PD----------------LRVFVSDPTWPNHVSIMNFM-GLPV---------------------- 141 (394)
T ss_dssp HHHHHHHH-HHHC--TT----------------CCEEEEESCCHHHHHHHHHH-TCCE----------------------
T ss_pred HHHHHHHH-HhcC--CC----------------CEEEEcCCCChhHHHHHHHc-CCce----------------------
Confidence 99999987 4332 22 36999999999865433322 2110
Q ss_pred cccCcceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003466 554 FMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (818)
Q Consensus 554 ~~~~~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g 631 (818)
..++.. +.+ -.| .+.+++.+.+ .+.+.+++++... ++
T Consensus 142 ------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~~~~~~~-~n 180 (394)
T 2ay1_A 142 ------QTYRYFDAETR-----------GVD------------------FEGMKADLAA-----AKKGDMVLLHGCC-HN 180 (394)
T ss_dssp ------EEEECEETTTT-----------EEC------------------HHHHHHHHHT-----CCTTCEEEEESSS-CT
T ss_pred ------EEEecccccCC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC-CC
Confidence 001110 000 001 2567777763 2234566776775 78
Q ss_pred CCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhccc-CCCCcE---EEeccccc-CCccccceeec-
Q 003466 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCVPDI---ACYGKLLT-GGVIPLAATLA- 703 (818)
Q Consensus 632 ~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~~-gv~PDi---vtlgKgLg-gGy~PlsAvl~- 703 (818)
..|.+. |.+++++|.++|++||+++|+||++++|++.| .......+ ...+|+ .+++|.+| +| +++|++++
T Consensus 181 ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~ 258 (394)
T 2ay1_A 181 PTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLAL 258 (394)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEE
T ss_pred CCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEE
Confidence 888754 88999999999999999999999999997765 23233322 123453 37899998 78 69999987
Q ss_pred --chHHHh----hcc-------CC-hH--------HHH---------H--------------HHHHHHHcCC---CeeEE
Q 003466 704 --TNAVFD----SFV-------GD-SK--------LWD---------L--------------ELIQQISSHR---TVQRV 735 (818)
Q Consensus 704 --~~~i~~----~l~-------~~-~~--------~~~---------~--------------~l~~~l~~~~---~v~~v 735 (818)
++++++ .+. .. .. .+. + .+.+.+++++ .+.-+
T Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 338 (394)
T 2ay1_A 259 CADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV 338 (394)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH
T ss_pred eCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE
Confidence 565432 221 00 00 110 0 1122232222 12111
Q ss_pred E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 736 V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 736 r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. ..|+++.+++. ...+.+.|.++||++.++ +|+.++ .++++|+++++++|+++
T Consensus 339 ~~~~g~~~~~~~~------------~~~~~~~l~~~gi~v~~~---~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 339 AEHRGMFSRLGAT------------PEQVKRIKEEFGIYMVGD---SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHCCSSEEECCCC------------HHHHHHHHHHHCEECCTT---CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred cCCceEEEeeCCC------------HHHHHHHHHhCCEEecCC---CeEEee-cCCHhhHHHHHHHHHHc
Confidence 2 22555433321 124566777899999874 578877 57899999999998765
No 115
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.71 E-value=7.5e-16 Score=172.04 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=187.8
Q ss_pred ceeeccccccccc-CCCCCCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhc------cC--CCCCCcEEEeC
Q 003466 400 QQFDACASWWTQG-PDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQG------VG--KGWASRAYFSD 468 (818)
Q Consensus 400 ~ylD~~sg~~~~~-lGh~~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~------~~--~~~l~~v~f~~ 468 (818)
.+||+.+|..... -... +|+|.+|+.+++++.....+ ..+..+....+++.+.+. .+ -. .+.+++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~ 111 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLT-SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCS 111 (416)
T ss_dssp CCEECCCCCTTTTSCSCC-CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEES
T ss_pred CeEEecCcCCCcccCCCC-CHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeC
Confidence 6888887765432 2245 89999999999876321111 112334445555555421 00 11 36899999
Q ss_pred ChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCccc
Q 003466 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 469 SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
+|++|++.+++.+. ..| .+|++.+.+||+.... +...|...
T Consensus 112 g~~~al~~~~~~l~-----~~g----------------d~vl~~~p~y~~~~~~-~~~~g~~~----------------- 152 (416)
T 1bw0_A 112 GGSHGILMAITAIC-----DAG----------------DYALVPQPGFPHYETV-CKAYGIGM----------------- 152 (416)
T ss_dssp HHHHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHH-HHHTTCEE-----------------
T ss_pred ChHHHHHHHHHHhC-----CCC----------------CEEEEcCCCcHhHHHH-HHHcCcEE-----------------
Confidence 99999999999761 222 3799999999985532 22222110
Q ss_pred CCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++..... .| .| .+.+++.+. ....+.++++|
T Consensus 153 -----------~~v~~~~~~----------~~~~d------------------~~~l~~~l~-------~~~~~v~i~~p 186 (416)
T 1bw0_A 153 -----------HFYNCRPEN----------DWEAD------------------LDEIRRLKD-------DKTKLLIVTNP 186 (416)
T ss_dssp -----------EEEEEEGGG----------TTEEC------------------HHHHHHHCC-------TTEEEEEEESS
T ss_pred -----------EEeecCccc----------CCCCC------------------HHHHHHHhc-------cCCeEEEEeCC
Confidence 001100000 00 01 255666664 22334556666
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-----cchhcccCCCCc---EEEeccccc-CCcccc
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPD---IACYGKLLT-GGVIPL 698 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-----~~a~e~~gv~PD---ivtlgKgLg-gGy~Pl 698 (818)
++..|.+. |++++++|.++|++||+++|+||++++|.+.|. +.....++..++ +.+++|+++ .| +++
T Consensus 187 --~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~ 262 (416)
T 1bw0_A 187 --SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRL 262 (416)
T ss_dssp --CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCC
T ss_pred --CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-ceE
Confidence 57778765 889999999999999999999999999877665 222222222222 347899975 57 799
Q ss_pred ceeecchH--HHhhcc-----------CChH--------HHH------------------HHHHHHHHcCCCeeEEEe-e
Q 003466 699 AATLATNA--VFDSFV-----------GDSK--------LWD------------------LELIQQISSHRTVQRVVA-L 738 (818)
Q Consensus 699 sAvl~~~~--i~~~l~-----------~~~~--------~~~------------------~~l~~~l~~~~~v~~vrg-~ 738 (818)
|+++++++ +++.+. .... .+. +.+.+.+++++.+..+.. .
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 342 (416)
T 1bw0_A 263 GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRG 342 (416)
T ss_dssp EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCB
T ss_pred EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCe
Confidence 99998763 222111 0100 110 122344555555544433 3
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHH-hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLR-EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
|.++.+.+...... ....+..+++.|+ ++||++.++ .+.+|+.+. +++++|++++++|.+++++.
T Consensus 343 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 343 AMYLMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp TTEEEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHcC---CCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 66666666432000 0012456777775 889999984 368999984 68999999999999988764
No 116
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.71 E-value=5.3e-16 Score=169.23 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=186.5
Q ss_pred eecCCeeEEEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCC
Q 003466 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW 460 (818)
Q Consensus 381 ~~~G~~~~v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~ 460 (818)
+++|. +++|.+|+ ++|||.++. ..++ . +|++.+|+.+++....... .+...+|.++|+++++..
T Consensus 3 ~~~g~--~~~~~~g~----~~id~~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~-----~~~~~~lr~~la~~~~~~- 66 (350)
T 3fkd_A 3 FGHGD--EGITPLSS----EIVNFSTTV--WTDG-D-KDHLEKHLVENLNCIRHYP-----EPDAGTLRQMLAKRNSVD- 66 (350)
T ss_dssp -------------------CCEECSCCS--CCCS-C-CHHHHHHHHHTGGGGGSCC-----CTTCHHHHHHHHHHTTCC-
T ss_pred ccccc--hHhhhccc----cEEEccCCC--CCCC-C-CHHHHHHHHHhHhHHhcCC-----CCcHHHHHHHHHHHhCcC-
Confidence 45555 58899999 999999864 3455 5 8999999999885443221 222257888888887632
Q ss_pred CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCc
Q 003466 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (818)
Q Consensus 461 l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~ 540 (818)
.+.++|+++|++|++.+++.. . | .+||+...+|++.... +...|..
T Consensus 67 ~~~i~~t~g~~~al~~~~~~l-~------g----------------d~Vi~~~p~~~~~~~~-~~~~g~~---------- 112 (350)
T 3fkd_A 67 NNAILVTNGPTAAFYQIAQAF-R------G----------------SRSLIAIPSFAEYEDA-CRMYEHE---------- 112 (350)
T ss_dssp GGGEEEESHHHHHHHHHHHHT-T------T----------------CEEEEEESCCHHHHHH-HHHTTCE----------
T ss_pred HHHEEEcCCHHHHHHHHHHHH-C------C----------------CEEEEeCCCcHHHHHH-HHHcCCe----------
Confidence 368999999999999999976 1 2 2789999989875422 2222211
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhhccccccccc-cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~-nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (818)
.+.+| . ++. + .+. ..+
T Consensus 113 --------------------~~~v~--------------~~~~~------------------~----~~~-------~~~ 129 (350)
T 3fkd_A 113 --------------------VCFYP--------------SNEDI------------------G----EAD-------FSN 129 (350)
T ss_dssp --------------------EEEEE--------------TTSCG------------------G----GSC-------CTT
T ss_pred --------------------EEEEe--------------cCCcc------------------c----cCc-------cCC
Confidence 00111 0 000 0 010 124
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch--hcccCCCCcEEEeccccc-CCcc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a--~e~~gv~PDivtlgKgLg-gGy~ 696 (818)
+.+|+++.. ++..|.+.+ .+.+++|.++|+++ ++|+||++++|+..|.... ...++....+.+++|.++ .| +
T Consensus 130 ~~~v~i~~p-~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~ 204 (350)
T 3fkd_A 130 MDFCWLCNP-NNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-L 204 (350)
T ss_dssp CSEEEEESS-CTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-G
T ss_pred CCEEEEeCC-CCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-h
Confidence 456666654 788888774 44455555555544 9999999999987776432 222233334458999998 77 7
Q ss_pred ccceeecchHHHhhccCChH------------------------------HHHHHHHHHHHcCCCeeEEEeeeeEEEEEE
Q 003466 697 PLAATLATNAVFDSFVGDSK------------------------------LWDLELIQQISSHRTVQRVVALGTLCAIEL 746 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~~~~~------------------------------~~~~~l~~~l~~~~~v~~vrg~Gl~~~iel 746 (818)
++|++++++++++.+..... ...+.+.+.+++++.+.-....|.++.+.+
T Consensus 205 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 284 (350)
T 3fkd_A 205 RIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLLRL 284 (350)
T ss_dssp CCEEEECCHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSEEEEEE
T ss_pred heEeEEeCHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcEEEEEC
Confidence 99999999999886643211 011234455666766655566677776776
Q ss_pred ecCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
... .+..+++.|.+ +||+++++ .+.+|++.. +++++++++++|++.+++
T Consensus 285 ~~~---------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 285 KKG---------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp SSS---------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred CCC---------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 532 15578889998 99999973 468999865 788999999988877654
No 117
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.71 E-value=6.7e-16 Score=172.47 Aligned_cols=308 Identities=11% Similarity=0.051 Sum_probs=187.1
Q ss_pred ceeecccccccccCCC-CCCHHHHHHHHHhhhh--cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDA-TLQIELARDMGYTAAR--FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh-~~hp~V~eAi~~q~~~--~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ 476 (818)
.+||+..|....+-|+ ...|.|.+|+.+.... ..+. ...+..+...++++++....+....+.++++++|++|++.
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~-~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~ 116 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYA-PIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRS 116 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCC-CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcC-CCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHH
Confidence 7888887765444343 2257788887764432 2221 1234456677888888765532112389999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.. -..| ..|++.+.+|++.... +...|...
T Consensus 117 ~~~~~-----~~~g----------------d~Vl~~~p~~~~~~~~-~~~~g~~~------------------------- 149 (413)
T 3t18_A 117 AIFSY-----LDEG----------------DPLICHDYYWAPYRKI-CEEFGRNF------------------------- 149 (413)
T ss_dssp HHHHH-----CCSS----------------CEEEEESSCCTHHHHH-HHHHTCEE-------------------------
T ss_pred HHHHh-----cCCC----------------CEEEECCCCcccHHHH-HHHhCCeE-------------------------
Confidence 99965 1222 3688888888764422 22222210
Q ss_pred CcceeecC-cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 003466 557 NSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (818)
Q Consensus 557 ~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG 634 (818)
..+++ +..+ ..| .+.+++.+.+. ..+...++++++ |. ++..|
T Consensus 150 ---~~~~~~~~~~-----------~~d------------------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG 193 (413)
T 3t18_A 150 ---KTFEFFTDDF-----------AFN------------------IDVYKEAIDEG---IRDSDRIASLINSPG-NNPTG 193 (413)
T ss_dssp ---EEECCBCTTS-----------SBC------------------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTC
T ss_pred ---EEeeccCCCC-----------CcC------------------HHHHHHHHHHH---hhcCCCEEEEEeCCC-CCCCC
Confidence 01111 0000 011 14555555420 001234466666 63 78888
Q ss_pred cccCCHHHHHHHHHHHH------hcCCcEEEeecccCcccCCcc---chhcccCCCCcE---E--Eeccccc-CCccccc
Q 003466 635 MHMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGVE---TTADLLGCVPDI---A--CYGKLLT-GGVIPLA 699 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~------~~gilLI~DEV~TGfGRtG~~---~a~e~~gv~PDi---v--tlgKgLg-gGy~Pls 699 (818)
.+. |.+.+++|.++|+ +||+++|+||++++|++.|.. +.....++.+|+ + ++||.+| .| +++|
T Consensus 194 ~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~riG 271 (413)
T 3t18_A 194 YSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYG-LRSG 271 (413)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGG-GCCE
T ss_pred CCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcC-cCcE
Confidence 776 6777999999999 999999999999999988862 233344566663 2 8999999 78 7999
Q ss_pred eeec---chHHHhhccCC------------hH-------------H---HHHH--------------HHHHHHcCCCeeE
Q 003466 700 ATLA---TNAVFDSFVGD------------SK-------------L---WDLE--------------LIQQISSHRTVQR 734 (818)
Q Consensus 700 Avl~---~~~i~~~l~~~------------~~-------------~---~~~~--------------l~~~l~~~~~v~~ 734 (818)
++++ ++++++.+... .. . +.+. +.+.+++.+ +.-
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 350 (413)
T 3t18_A 272 AAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-LTM 350 (413)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCC
T ss_pred EEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCc
Confidence 9998 88888765421 00 0 1111 112233332 211
Q ss_pred EEeeee-EEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 735 VVALGT-LCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 735 vrg~Gl-~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+...|. ++-+.+. + +..+++.|.++||++.|+++.+|+.++.. +++++ +++|.++++++.
T Consensus 351 ~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gv~v~~g~~~iRis~~~~-~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 351 IPYFGGFFTFIPTD-K----------AFDIVKDLEKENIFTIPSAKGIRVAICGV-GEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp BCCCSSSCEEEECS-C----------HHHHHHHHHHTTEECEECSSEEEECTTTS-CGGGH---HHHHHHHHHHHH
T ss_pred cCCCceEEEEeCCC-C----------HHHHHHHHHhCCEEEecCCCceEEEEeeC-CHHHH---HHHHHHHHHHHh
Confidence 222333 2322221 1 45677889999999999889999998854 44555 777777776653
No 118
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.70 E-value=8.2e-16 Score=177.61 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCC-CC----ChhHHHHHHHHHhccCCCCC--CcE--EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAARFGHVMFPE-NV----YEPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~~~-~~----~~~~~eLae~L~~~~~~~~l--~~v--~f~~SGseA~e~ALklA~r~~ 485 (818)
|+ ++.+.+++.+++.......... .. .+...+++++|+++++.+ . +.+ +|+++|++|++.|++.+ +..
T Consensus 107 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~-~~~ 183 (514)
T 3mad_A 107 HG-DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTY-RDW 183 (514)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHH-HHH
T ss_pred CC-CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHH-HHH
Confidence 35 7888888888776543221111 11 234456667778877632 1 366 99999999999999998 443
Q ss_pred hhc-ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC
Q 003466 486 SFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (818)
Q Consensus 486 t~~-~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~ 564 (818)
.++ .| ..+..||+...+|++ ...++...|... ..++.
T Consensus 184 g~~~~g-------------~~~d~Vi~~~~~~~~-~~~~~~~~G~~v----------------------------~~v~~ 221 (514)
T 3mad_A 184 ARATKG-------------ITAPEAVVPVSAHAA-FDKAAQYFGIKL----------------------------VRTPL 221 (514)
T ss_dssp HHHHHC-------------CSSCEEEEETTSCTH-HHHHHHHHTCEE----------------------------EEECB
T ss_pred hhhhcC-------------CCCCeEEEeCccchH-HHHHHHHcCCee----------------------------EEeee
Confidence 321 11 123577877777766 333333332210 11111
Q ss_pred cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHH
Q 003466 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (818)
Q Consensus 565 P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~ 644 (818)
...+ ..| .+.|++.|. .++++|++++. ++..|.+.+ ++
T Consensus 222 ~~~~-----------~~d------------------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~ 259 (514)
T 3mad_A 222 DADY-----------RAD------------------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IP 259 (514)
T ss_dssp CTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HH
T ss_pred CCCC-----------CCC------------------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HH
Confidence 1000 011 256777664 36789999997 888898876 89
Q ss_pred HHHHHHHhcCCcEEEeecccCc-----ccCCc---cchhcccCCCCcEEEecccccCCccccceeecchHHHhhcc----
Q 003466 645 ILVKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV---- 712 (818)
Q Consensus 645 ~LreLc~~~gilLI~DEV~TGf-----GRtG~---~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~---- 712 (818)
+|+++|++||++||+||+++|| +++|. .+.....|+......++|.+.+| .++|+++++++......
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~~ 338 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGA-KGTSVILYRRPDLLHYQYFIA 338 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCC-SSCEEEEESSHHHHTTTCEEE
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCC-CCeEEEEEeCHHHhccccccc
Confidence 9999999999999999999876 55665 45555667633334556998887 58999988876553211
Q ss_pred -------------CChH-------------HH---------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcc
Q 003466 713 -------------GDSK-------------LW---------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGC 751 (818)
Q Consensus 713 -------------~~~~-------------~~---------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~ 751 (818)
.+.. .+ .+.+.+.+++.+.+.-+.....++.+.....
T Consensus 339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-- 416 (514)
T 3mad_A 339 ADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAVASDEL-- 416 (514)
T ss_dssp SSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSSEEEEECSSS--
T ss_pred cccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeEEEEEeCCCC--
Confidence 0000 00 1123445555554332222233454543211
Q ss_pred cCCCchHHHHHHHHHHHhCCceEeec--CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHHH
Q 003466 752 NAGYGSLYAASLLKKLREDGVYMRPL--GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 752 ~~~~~~~~a~~~~~~l~e~Gvlv~p~--g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~~ 810 (818)
.+..+.+.|.++||++... ++.+|++++. ..++++|++++++|+++++++.+
T Consensus 417 -------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 417 -------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp -------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2557889999999988542 4789999884 45669999999999999988753
No 119
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.70 E-value=1.3e-15 Score=167.08 Aligned_cols=299 Identities=12% Similarity=0.056 Sum_probs=189.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCC----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||+.+ .|+. +|+|.+|+.++++.. +...... ...+...++.++|+++++.+ .+.++++++|++|+
T Consensus 3 ~yld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 74 (384)
T 1eg5_A 3 VYFDNNA------TTRV-DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESI 74 (384)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHH
T ss_pred EEEecCc------cCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHH
Confidence 5788765 3578 999999999999762 2111000 01244678999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc--cccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al--s~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+ ..+....| .+|++.+.+||+...... ...|...
T Consensus 75 ~~~~~~~-~~~~~~~g----------------d~vl~~~~~~~~~~~~~~~~~~~g~~~--------------------- 116 (384)
T 1eg5_A 75 NWILKTV-AETFEKRK----------------RTIITTPIEHKAVLETMKYLSMKGFKV--------------------- 116 (384)
T ss_dssp HHHHHHH-HHHTTTTC----------------CEEEECTTSCHHHHHHHHHHHHTTCEE---------------------
T ss_pred HHHHHhh-hhhccCCC----------------CEEEECCCCchHHHHHHHHHHhcCCEE---------------------
Confidence 9999988 32111222 378888888887543221 2222110
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++....+ ..| .+.+++.+. .++++|++++. ++.
T Consensus 117 -------~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 151 (384)
T 1eg5_A 117 -------KYVPVDSRG-----------VVK------------------LEELEKLVD--------EDTFLVSIMAA-NNE 151 (384)
T ss_dssp -------EECCBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred -------EEEccCCCC-----------ccC------------------HHHHHHHhC--------CCCeEEEEECC-CCC
Confidence 001110000 011 255666663 26788999986 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcC--CcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHH-
Q 003466 633 GGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV- 707 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i- 707 (818)
.|.+.+ +++|.++|++|| +++|+||+++ ||... +.... ..+|++++| |.+|- ..+|++++++++
T Consensus 152 tG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~--~G~G~~~~~~~~~ 220 (384)
T 1eg5_A 152 VGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGP--KGVGITYIRKGVP 220 (384)
T ss_dssp TCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSC--TTCEEEEECTTSC
T ss_pred cccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCC--CceEEEEEcCCCc
Confidence 898886 899999999999 9999999995 76532 11222 358999877 97542 116888888876
Q ss_pred -HhhccCC---------hH-------------HHH--------------HHHHHHHHcCCCeeEEE----eeeeEEEEEE
Q 003466 708 -FDSFVGD---------SK-------------LWD--------------LELIQQISSHRTVQRVV----ALGTLCAIEL 746 (818)
Q Consensus 708 -~~~l~~~---------~~-------------~~~--------------~~l~~~l~~~~~v~~vr----g~Gl~~~iel 746 (818)
...+... .. .+. +.+.+.+++ +.+.-+. +.+.++.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~ 299 (384)
T 1eg5_A 221 IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSF 299 (384)
T ss_dssp CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEEC
T ss_pred cccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEe
Confidence 4333211 00 000 112334444 2221111 1345556655
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLY 802 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~ 802 (818)
... .+..+.+.|.++||++.+. .+.+|+.+...+|++|+++++++|+
T Consensus 300 ~~~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 370 (384)
T 1eg5_A 300 PNI---------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIE 370 (384)
T ss_dssp TTC---------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCC---------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 321 1456788899999999872 2579999988899999999999999
Q ss_pred HHHHHHHH
Q 003466 803 QRLEEFDK 810 (818)
Q Consensus 803 ~~l~~l~~ 810 (818)
++++++.+
T Consensus 371 ~~~~~~~~ 378 (384)
T 1eg5_A 371 EILSFLDL 378 (384)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99988754
No 120
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.70 E-value=1.9e-16 Score=175.22 Aligned_cols=290 Identities=16% Similarity=0.089 Sum_probs=189.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~AL 478 (818)
.|+|..+ -++. +|++.+|+.+++.. +.. ....+...+++++|++++|.+ .+ .++|+++|++|++.++
T Consensus 35 ~~l~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGPG------PSNA-HPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSSS------CCCC-CHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccCC------CCCC-CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 6777543 4577 99999999988764 111 113467789999999988753 35 7999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc-ccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a-ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.+. .. ..+|++.+.+||+.++.. +...|..
T Consensus 103 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~--------------------------- 134 (393)
T 1vjo_A 103 ANAV-----EP----------------GDVVLIGVAGYFGNRLVDMAGRYGAD--------------------------- 134 (393)
T ss_dssp HHHC-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE---------------------------
T ss_pred Hhcc-----CC----------------CCEEEEEcCChhHHHHHHHHHHcCCc---------------------------
Confidence 9871 12 237999999999842211 1111111
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
...++.+..+ ..| .+.|++.+.+ .++++|++++. ++..|.+.
T Consensus 135 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 135 -VRTISKPWGE-----------VFS------------------LEELRTALET-------HRPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp -EEEEECCTTC-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEEC
T ss_pred -eEEEecCCCC-----------CCC------------------HHHHHHHHhh-------CCceEEEEecc-CCCcceec
Confidence 0111111100 112 2566777752 14568899987 88889887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC--
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG-- 713 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~-- 713 (818)
+ +++|.++|++||+++|+||+++ ||.... ......+|+++.| |.++++. ++|++++++++++.+..
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~----~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~ 246 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVPI----FLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRR 246 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSCC----CTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCS
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcCC----cccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccC
Confidence 5 8999999999999999999996 765431 2223468999776 9999885 89999999998765410
Q ss_pred -------------------------C-hH-----------HH-H--------------HHHHHHHHcCCC-eeEEEe--e
Q 003466 714 -------------------------D-SK-----------LW-D--------------LELIQQISSHRT-VQRVVA--L 738 (818)
Q Consensus 714 -------------------------~-~~-----------~~-~--------------~~l~~~l~~~~~-v~~vrg--~ 738 (818)
. .. .+ . +.+.+.+++.+. +....+ .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 326 (393)
T 1vjo_A 247 TKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRL 326 (393)
T ss_dssp SCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC
T ss_pred CCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccC
Confidence 1 00 10 0 112333444321 111111 2
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l 805 (818)
+.++.+.+... ..+..+++.|.++ ||++.++ .+.+|+.+ +...+++++++++++|.+++
T Consensus 327 ~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 327 PTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp SSEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 34555555321 1245688899988 9999873 47899995 56678889999999998875
No 121
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.70 E-value=1.5e-16 Score=174.67 Aligned_cols=281 Identities=10% Similarity=0.062 Sum_probs=176.9
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCC-CcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l-~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|+|.+|+.+++.. +.. ....+...+++++|+++++.+.- +.+++++||++|++.+++.+. ..|
T Consensus 31 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----~~g------ 95 (376)
T 3f0h_A 31 SEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----TKK------ 95 (376)
T ss_dssp CHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred cHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----CCC------
Confidence 78999999887642 211 11235667888889888764311 245568899999999999761 222
Q ss_pred CCCccccccceEEEEEcCCCCCCcccccc-ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als-~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+||+.+.+||+....... ..|... ..++.+..+
T Consensus 96 ----------d~vi~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~~~~~~------- 130 (376)
T 3f0h_A 96 ----------DKVLVIDGGSFGHRFVQLCEIHEIPY----------------------------VALKLEHGK------- 130 (376)
T ss_dssp ----------CCEEEEESSHHHHHHHHHHHHTTCCE----------------------------EEEECCTTC-------
T ss_pred ----------CeEEEEeCChhhHHHHHHHHHcCCce----------------------------EEEeCCCCC-------
Confidence 3688888888885422111 111110 011111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+ ..++++|+++++ ++..|.+.+ +++|+++|++||+
T Consensus 131 ----~~d------------------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 175 (376)
T 3f0h_A 131 ----KLT------------------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNNM 175 (376)
T ss_dssp ----CCC------------------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcCC
Confidence 011 14455433 246788999986 899999886 9999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEecccccCCccccceeecchHHHhhccCC---------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD--------------------- 714 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~--------------------- 714 (818)
++|+||+++++++. +..+.+|+...+.+++|+++|+ .+++++++++++++.+...
T Consensus 176 ~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T 3f0h_A 176 FFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQT 251 (376)
T ss_dssp EEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCC
T ss_pred EEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCC
Confidence 99999999876553 3445566654555677999876 5789999999987755320
Q ss_pred --h------H-------HHHH----------------HHHHHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 715 --S------K-------LWDL----------------ELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 715 --~------~-------~~~~----------------~l~~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
. . .+.+ .+.+.+++.+. +..-...+.++.+... . ..+..
T Consensus 252 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~ 322 (376)
T 3f0h_A 252 PFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPT-T--------ANAYD 322 (376)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEES-S--------SCHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCC-C--------CCHHH
Confidence 0 0 0111 11122223321 0000112233333221 1 12567
Q ss_pred HHHHHHhC-CceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 763 LLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 763 ~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+.+.|.++ ||+++++ ++.+|+.++..+|++|+++++++|+++++
T Consensus 323 l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 323 IFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp HHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 88899998 9999873 37899999999999999999999998875
No 122
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.70 E-value=8e-16 Score=172.12 Aligned_cols=312 Identities=10% Similarity=0.055 Sum_probs=188.4
Q ss_pred ceeecccccccccC-CCCCCHHHHHHHHHhhhh-cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGP-DATLQIELARDMGYTAAR-FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~l-Gh~~hp~V~eAi~~q~~~-~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~A 477 (818)
.+||+..|.....- .+...+.|.+|+.+..+. ...+....+..+...++++.+....+....+.++++++|++|+..+
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~ 118 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHL 118 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHH
Confidence 56666655331111 122267888888765542 1111112234456667777776654321112899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++.. -..| ..|++.+.+|++....+. ..|...
T Consensus 119 ~~~l-----~~~g----------------d~Vl~~~p~~~~~~~~~~-~~g~~~-------------------------- 150 (418)
T 3rq1_A 119 IHNY-----TEPG----------------DEVLTADWYWGAYRVICS-DTGRTL-------------------------- 150 (418)
T ss_dssp HHHH-----SCTT----------------CEEEEESSCCTHHHHHHH-HTTCEE--------------------------
T ss_pred HHHh-----cCCC----------------CEEEECCCCchhHHHHHH-HcCCEE--------------------------
Confidence 9865 1222 378888888887553322 222110
Q ss_pred cceeecC-cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003466 558 SKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (818)
Q Consensus 558 ~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~ 635 (818)
..+++ +..+ ..| .+.+++.+.+. ..+...++++++ |. ++..|.
T Consensus 151 --~~v~~~~~~~-----------~~d------------------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG~ 195 (418)
T 3rq1_A 151 --VTYSLFDEHN-----------NFN------------------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTGY 195 (418)
T ss_dssp --EEECSBCTTS-----------SBC------------------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTCC
T ss_pred --EEEeeeCCCC-----------CcC------------------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCCC
Confidence 00111 0000 011 14555555420 001234466666 64 677887
Q ss_pred ccCCHHHHHHHHHHHH------hcCCcEEEeecccCcccCCc---cchhcccCCCCcE---E--Eeccccc-CCccccce
Q 003466 636 HMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLAA 700 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~------~~gilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi---v--tlgKgLg-gGy~PlsA 700 (818)
+. |.+.+++|.++|+ +||+++|+||++++|++.|. .+.....++.+|+ + ++||.+| .| +++|+
T Consensus 196 ~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~ 273 (418)
T 3rq1_A 196 SI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGA 273 (418)
T ss_dssp CC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEE
T ss_pred CC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceE
Confidence 66 7777999999999 89999999999999988875 2334445667773 2 7999998 56 79999
Q ss_pred eec---chHHHhhccCC------------hH--------H---------HHH---H-----------HHHHHHcCCCeeE
Q 003466 701 TLA---TNAVFDSFVGD------------SK--------L---------WDL---E-----------LIQQISSHRTVQR 734 (818)
Q Consensus 701 vl~---~~~i~~~l~~~------------~~--------~---------~~~---~-----------l~~~l~~~~~v~~ 734 (818)
+++ ++++++.+... .. . +.+ + +.+.+++++ +.-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 352 (418)
T 3rq1_A 274 MIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-LPM 352 (418)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 998 88888765321 00 0 111 0 112233322 111
Q ss_pred EEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 735 VVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 735 vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+... |+++-+.+. .+..+++.|.++||++.|+++.+|++.. .+++++|++++++|.++++++.
T Consensus 353 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 353 LPYRGGFFITIPTD-----------SANAICEELKKEHIYVIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CCCCSSSEEEEECT-----------THHHHHHHHHHTTEECEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred CCCCceEEEEcCCC-----------CHHHHHHHHHhCCEEEecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 2222 333323331 1456788899999999998889999855 4799999999999999987653
No 123
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.70 E-value=1.6e-16 Score=178.59 Aligned_cols=308 Identities=10% Similarity=0.060 Sum_probs=191.2
Q ss_pred ceeecccccccccCCCCCCHHH--HHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhcc-CCCCCCc---EEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFG--HVMFPENVYEPALECAELLLQGV-GKGWASR---AYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V--~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~-~~~~l~~---v~f~~SGs 471 (818)
.+|||.+|..+ .+|+ +|.+ .+++.+++++.. .+....+..+....+++.+.+.. +.. .+. ++++++|+
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~g~~ 123 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTNALT 123 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEESHHH
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcCCch
Confidence 78999887654 5774 5667 888888775411 11111122334444444443221 321 256 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+|++.+++... ..| .+|++.+.+||+....+....|...
T Consensus 124 ~al~~~~~~l~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~~-------------------- 162 (430)
T 2x5f_A 124 HGLSLVGDLFV-----NQD----------------DTILLPEHNWGNYKLVFNTRNGANL-------------------- 162 (430)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEESSCCTHHHHHHTTTTCCEE--------------------
T ss_pred HHHHHHHHHHh-----CCC----------------CEEEEcCCcCccHHHHHHHhcCCeE--------------------
Confidence 99999999761 222 3799999999986533222011110
Q ss_pred cccccCcceeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEcccc
Q 003466 552 TVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVV 629 (818)
Q Consensus 552 ~~~~~~~~~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~ 629 (818)
..++... .+ ..|+ +.+++.+.. .+.++.+ ++.+|
T Consensus 163 --------~~~~~~~~~~-----------~~d~------------------~~l~~~l~~-----~~~~~~~v~i~~p-- 198 (430)
T 2x5f_A 163 --------QTYPIFDKDG-----------HYTT------------------DSLVEALQS-----YNKDKVIMILNYP-- 198 (430)
T ss_dssp --------EEECCBCTTS-----------CBCS------------------HHHHHHHHH-----CCSSEEEEEECSS--
T ss_pred --------EEEeccCccC-----------CcCH------------------HHHHHHHHh-----cCCCCEEEEEcCC--
Confidence 0011100 00 0111 456667753 1234555 55556
Q ss_pred ccCCCcccCCHHHHHHHHHHHHh-----cCCcEEEeecccCcccCCccc-h-h-cccCCCCc------EEEeccccc-CC
Q 003466 630 HAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-T-A-DLLGCVPD------IACYGKLLT-GG 694 (818)
Q Consensus 630 ~g~gG~~~~p~~fl~~LreLc~~-----~gilLI~DEV~TGfGRtG~~~-a-~-e~~gv~PD------ivtlgKgLg-gG 694 (818)
++..|.+. |.+++++|.++|++ ||+++|+||++++|.+.|..+ . . ...+..++ +.+++|.+| .|
T Consensus 199 ~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 277 (430)
T 2x5f_A 199 NNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG 277 (430)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG
T ss_pred CCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC
Confidence 67778754 88999999999999 999999999999997777532 2 1 22244455 458999998 77
Q ss_pred ccccceeec---chHHHhhccC--------C----hH--------HHH------HH--------------HHHHHHcC--
Q 003466 695 VIPLAATLA---TNAVFDSFVG--------D----SK--------LWD------LE--------------LIQQISSH-- 729 (818)
Q Consensus 695 y~PlsAvl~---~~~i~~~l~~--------~----~~--------~~~------~~--------------l~~~l~~~-- 729 (818)
+++|++++ ++++++.+.. . .. .+. ++ +.+.++++
T Consensus 278 -~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 356 (430)
T 2x5f_A 278 -FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY 356 (430)
T ss_dssp -GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred -CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 79999999 9888765431 0 00 121 11 11223311
Q ss_pred C-CeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHh-CCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 730 R-TVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 730 ~-~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+ .+..+... |+++.+.+. . ..+..+++.|.+ +||++.|+ .+.+|+.++. .++++|++++++|.+++
T Consensus 357 ~~g~~~~~~~~g~~~~~~~~-~--------~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 357 HSHWQAYDFNSGYFMAIKVH-D--------VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp TTTEEECCCCBSSEEEEEES-S--------SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHH
T ss_pred CCCceeeCCCceEEEEeCCC-C--------CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 1 23333333 455667775 2 124568888997 99999996 4789999986 48999999999999998
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 427 ~~~ 429 (430)
T 2x5f_A 427 DDL 429 (430)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 124
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.70 E-value=1.4e-16 Score=176.77 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=181.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhh-cccc-cCCCC--CChhHHHHH----HHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHV-MFPEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~-~~~~-~~~~~--~~~~~~eLa----e~L~~~~~~~~l~~v~f~~SGs 471 (818)
+|||+.++... - +|+|.+|+.+++++ +.+. ..... ..+....++ ++|+++++.. ...++++||+
T Consensus 24 ~~i~~~~~~~~-----~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF-----V-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC-----C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC-----C-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 78998876532 2 79999999999975 3221 10001 123222333 4788888742 2336778999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc--cccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t--~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
+|++.|++.+. ..| .+|++.+.+||+.. ..++...|...
T Consensus 96 ~a~~~~~~~~~-----~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~~------------------ 136 (407)
T 2dkj_A 96 QANMAVYMALM-----EPG----------------DTLMGMDLAAGGHLTHGSRVNFSGKLY------------------ 136 (407)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHHS------------------
T ss_pred HHHHHHHHHhc-----CCC----------------CEEEEecccccCccchHHHHHhcCceE------------------
Confidence 99999999871 122 37888888887753 22222222110
Q ss_pred CCcccccCcceeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-
Q 003466 550 PPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII- 625 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv- 625 (818)
..++++ +.+ ..| .+.+++.+.. .++++|++
T Consensus 137 ----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~ 170 (407)
T 2dkj_A 137 ----------KVVSYGVRPDTE-----------LID------------------LEEVRRLALE-------HRPKVIVAG 170 (407)
T ss_dssp ----------EEEEECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC
T ss_pred ----------EEEecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCeEEEEe
Confidence 000000 000 112 2566677752 13567777
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccC-cccCCccchhcccCCCCcEE--EecccccCCccccceee
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TG-fGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl 702 (818)
+|. ++ ... + +++|.++|++||+++|+||+|++ +...|.... .++ .+|++ +++|+|+|+ .+|+++
T Consensus 171 ~p~-~~---~~~-~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~g~--~~G~~~ 237 (407)
T 2dkj_A 171 ASA-YP---RFW-D---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLRGP--RGGLIL 237 (407)
T ss_dssp CSS-CC---SCC-C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGCCC--SCEEEE
T ss_pred ccc-cC---CCC-C---HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCCCC--CceEEE
Confidence 786 43 333 2 89999999999999999999975 544554321 112 27888 899999975 479999
Q ss_pred cc-hHHHhhccCC-------h--H-----------HH---------------HHHHHHHHHcCCCeeEE--EeeeeEEEE
Q 003466 703 AT-NAVFDSFVGD-------S--K-----------LW---------------DLELIQQISSHRTVQRV--VALGTLCAI 744 (818)
Q Consensus 703 ~~-~~i~~~l~~~-------~--~-----------~~---------------~~~l~~~l~~~~~v~~v--rg~Gl~~~i 744 (818)
++ +++++.+... . . .+ .+.+.+.|++.+. .-+ ++.|.++.+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~ 316 (407)
T 2dkj_A 238 SNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGY-RIVTGGTDNHLFLV 316 (407)
T ss_dssp ESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEE
T ss_pred ECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCc-eeecCCCCceEEEE
Confidence 99 7887654211 0 0 00 0122334444432 111 346778888
Q ss_pred EEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCC----CChHHHHHHHHHHHHHHHHH
Q 003466 745 ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 745 el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl----~~t~edId~~~~~l~~~l~~ 807 (818)
++.... ..+..+.+.|.++||++.+. .+.+|+.++. .+|++|+++++++|++++++
T Consensus 317 ~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 317 DLRPKG-------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECGGGT-------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ECcccC-------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 775321 11456788899999999873 3579999876 38899999999999999877
No 125
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.70 E-value=1.4e-15 Score=168.77 Aligned_cols=253 Identities=12% Similarity=0.098 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++++. +..++++||++|++.|++.+. +. ..+|++.+.+||+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~-----~~----------------g~~vl~~~~~~~~~ 104 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEecCCcHhH
Confidence 4567788999999999874 356666899999999999761 11 24789999999873
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+...... .+ ...+.+| .+|
T Consensus 105 ~-~~~~~~~~~-------------~g-------------~~~~~~~--------------~~d----------------- 126 (386)
T 1cs1_A 105 Y-RLFDSLAKR-------------GC-------------YRVLFVD--------------QGD----------------- 126 (386)
T ss_dssp H-HHHHHHHTT-------------TS-------------CEEEEEC--------------TTC-----------------
T ss_pred H-HHHHHHHHh-------------cC-------------CEEEEeC--------------CCC-----------------
Confidence 2 221100000 00 0000011 112
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|+++++ ++..|.+.+ +++|+++|++||+++|+||+++++... ... .++
T Consensus 127 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~~ 188 (386)
T 1cs1_A 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---ALG 188 (386)
T ss_dssp -HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GGT
T ss_pred -HHHHHHhhc--------cCCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---ccC
Confidence 256677775 25689999997 899998875 999999999999999999999877443 211 234
Q ss_pred CCCcEE--EecccccCCcccc-ceeecch-HHHhhccCC--------hH-----------HH---H-------HHHHHHH
Q 003466 680 CVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSFVGD--------SK-----------LW---D-------LELIQQI 726 (818)
Q Consensus 680 v~PDiv--tlgKgLggGy~Pl-sAvl~~~-~i~~~l~~~--------~~-----------~~---~-------~~l~~~l 726 (818)
+|++ +++|.++++..++ |++++++ ++++.+... .. .+ . +.+.+.+
T Consensus 189 --~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l 266 (386)
T 1cs1_A 189 --ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYL 266 (386)
T ss_dssp --CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --ceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 5655 7999998765566 8888876 776654311 00 00 0 1122334
Q ss_pred HcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee---c--------
Q 003466 727 SSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---L-------- 777 (818)
Q Consensus 727 ~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p---~-------- 777 (818)
++++.+..+ ++.|.++.+++... ...+.+.|.++||++++ +
T Consensus 267 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~ 336 (386)
T 1cs1_A 267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRFLGGLSLFTLAESLGGVESLISH 336 (386)
T ss_dssp TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHHHHTCSSSEEBSCCCSSSCEEEE
T ss_pred hcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHHHHhCCcceEcccCCCcceeeec
Confidence 445444333 45688999987532 33566778889999873 1
Q ss_pred --------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 --------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 --------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.+|+++++..++++|+.+.++|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 337 AATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp GGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 278999999988888888888777654
No 126
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.68 E-value=1e-15 Score=173.45 Aligned_cols=314 Identities=13% Similarity=-0.011 Sum_probs=187.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.++.++.. - .+++.+|+... ...+ ...+...+|.++|+++++. +.++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~---~-~~~~~~a~~~~-----~~~y--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNA---M-SDKQWAGMMMG-----DEAY--AGSENFYHLERTVQELFGF---KHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCC---C-CHHHHHHHTTC-----CCCS--SSCHHHHHHHHHHHHHHCC---SEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCcc---C-CHHHHHHhhcc-----hhhc--ccChhHHHHHHHHHHHhCC---CcEEEeCCcHHHHHHHHH
Confidence 7999987554432 2 46777776521 1111 1356678999999999873 689999999999999998
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+. . ++ + |+...+||+.+..++...|.....-+ ....
T Consensus 109 ~l~-----~---------------~g--d-i~~~~~~~~~~~~~~~~~G~~~~~v~--------------~~~~------ 145 (456)
T 2ez2_A 109 LAI-----K---------------PG--Q-YVAGNMYFTTTRYHQEKNGAVFVDIV--------------RDEA------ 145 (456)
T ss_dssp HHC-----C---------------TT--C-EEEESSCCHHHHHHHHHTTCEEEECB--------------CGGG------
T ss_pred HhC-----C---------------CC--C-EeccccccchhHHHHHHcCCEEEEec--------------cccc------
Confidence 761 1 22 3 77888998987776666553311100 0000
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..|+.. .+|+ + .-| .+.|++.+.+ .....+++|++++..++.+|. +.+
T Consensus 146 ---~~~~~~---------~~~~-----~--~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~n~ptG~-~~~ 193 (456)
T 2ez2_A 146 ---HDAGLN---------IAFK-----G--DID--------LKKLQKLIDE----KGAENIAYICLAVTVNLAGGQ-PVS 193 (456)
T ss_dssp ---GCTTCC---------CSCT-----T--CBC--------HHHHHHHHHH----HCGGGEEEEEEESSBTTTTSB-CCC
T ss_pred ---cccccc---------cccc-----C--CCC--------HHHHHHHHHh----ccccceeEEEEeccCCCCCCc-cCC
Confidence 000000 0000 0 001 2566777753 112457899999432547785 558
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccC----------cccCCccch--hcccCCCCcEEEec-ccccCCccc-cceeec-c
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACYG-KLLTGGVIP-LAATLA-T 704 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TG----------fGRtG~~~a--~e~~gv~PDivtlg-KgLggGy~P-lsAvl~-~ 704 (818)
.+++++|.++|++||+++|+||+|+. +++.|..+. .+..+..+|++++| |.+++ .| .|++++ +
T Consensus 194 ~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~~ 271 (456)
T 2ez2_A 194 MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMND 271 (456)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEESC
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEECC
Confidence 99999999999999999999999974 456665332 11234558998884 66654 35 555666 5
Q ss_pred hHHHhhccC------------C-h--H-------H---H-H----------HHHHHHHHcCC--CeeEEEeeeeEEEEEE
Q 003466 705 NAVFDSFVG------------D-S--K-------L---W-D----------LELIQQISSHR--TVQRVVALGTLCAIEL 746 (818)
Q Consensus 705 ~~i~~~l~~------------~-~--~-------~---~-~----------~~l~~~l~~~~--~v~~vrg~Gl~~~iel 746 (818)
+++++.+.. . . . . + . +.+.+.+++.+ .+.. ..|.++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p--~~~~~~~~~~ 349 (456)
T 2ez2_A 272 DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEP--VGGHAVFLDA 349 (456)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBCSS--CCSSEEEEEH
T ss_pred HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCccccC--CCceEEEEEh
Confidence 676553210 0 0 0 0 0 0 11222333322 1111 2255555555
Q ss_pred ec--CcccCCCchHH-HHHHHHHH-HhCCceEeec------------------CCEEEEECCCC-ChHHHHHHHHHHHHH
Q 003466 747 QA--AGCNAGYGSLY-AASLLKKL-REDGVYMRPL------------------GNVIYLMCGPC-SSPEVCSQLLLKLYQ 803 (818)
Q Consensus 747 ~~--~~~~~~~~~~~-a~~~~~~l-~e~Gvlv~p~------------------g~~ir~~ppl~-~t~edId~~~~~l~~ 803 (818)
.. .. . ..... +..+++.| .++||.+.+. .+.+|++++.. +|++||++++++|++
T Consensus 350 ~~~~~~--~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 350 RRFCEH--L-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HHHTTT--S-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred HHhcCC--C-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 31 10 0 01122 45567777 5889986431 26899999987 899999999999999
Q ss_pred HHHHHH
Q 003466 804 RLEEFD 809 (818)
Q Consensus 804 ~l~~l~ 809 (818)
++++..
T Consensus 427 ~l~~~~ 432 (456)
T 2ez2_A 427 LYQHKE 432 (456)
T ss_dssp HHHTGG
T ss_pred HHhhhh
Confidence 987654
No 127
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.67 E-value=1.7e-15 Score=168.87 Aligned_cols=275 Identities=11% Similarity=0.048 Sum_probs=175.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++++.+++..+........+..+.++...+++++|+++.+. +.+++++||++|++.|++.+. +.|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~g------- 103 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQG------- 103 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT-------
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC-------
Confidence 56666666633333222222334578899999999999874 578888999999999999761 122
Q ss_pred CCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
.+||+.+.+||+...... ...|.. .+.+|
T Consensus 104 ---------d~vi~~~~~~~~~~~~~~~~~~~~g~~------------------------------~~~v~--------- 135 (398)
T 2rfv_A 104 ---------DHIVSASAIYGCTHAFLSHSMPKFGIN------------------------------VRFVD--------- 135 (398)
T ss_dssp ---------CEEEEESSSCHHHHHHHHTHHHHTTCE------------------------------EEEEC---------
T ss_pred ---------CEEEEcCCCcccHHHHHHHHHHHcCCE------------------------------EEEeC---------
Confidence 378888888887442221 111110 00111
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
.+| .+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||
T Consensus 136 -----~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 179 (398)
T 2rfv_A 136 -----AAK------------------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQG 179 (398)
T ss_dssp -----TTS------------------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTT
T ss_pred -----CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcC
Confidence 112 255666663 36789999997 888898885 999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcE--EEecccccCCcccc-ceeecchHHHh-hcc-------CChH-------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD-SFV-------GDSK------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgKgLggGy~Pl-sAvl~~~~i~~-~l~-------~~~~------- 716 (818)
+++|+||+++ .|..+... .++ +|+ .+++|.+++...|+ |++++++++++ .+. ....
T Consensus 180 ~~li~De~~~-~~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T 2rfv_A 180 ALLVVDNTFM-SPYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWL 253 (398)
T ss_dssp CEEEEECTTT-CTTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHH
T ss_pred CEEEEECCCc-ccccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 9999999996 33333322 234 565 58999998744788 88899988765 332 1110
Q ss_pred ---------H-HH------HHHHHHHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 717 ---------L-WD------LELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 717 ---------~-~~------~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
. ++ +.+.+.+++++.+.++ ++.|.++.+++.... ..+..
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~ 326 (398)
T 2rfv_A 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL-------EAGRR 326 (398)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------HHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH-------HHHHH
Confidence 0 00 1123445555443333 346888888885321 23444
Q ss_pred HHHHHHhCCceEeec----------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL----------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~----------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.+.+...|+.+.++ .+.+|++++...++++|++++++|+++
T Consensus 327 l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 555555556654322 379999999999999999999888653
No 128
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.67 E-value=4.9e-16 Score=169.10 Aligned_cols=297 Identities=12% Similarity=0.030 Sum_probs=186.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~AL 478 (818)
+++|+..| .++ . +|+|.+|+.+++. +.. ....++...++.++|+++++.+ ..+.++|+++|++|++.++
T Consensus 4 ~~~~~~~g----p~~-~-~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT-T-SRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC-C-CHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC-C-CHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 46777765 233 5 8999999988642 211 0111256778889999888731 1137999999999999999
Q ss_pred HHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
+.+. ..| .+||+.+..||+.+...+ ...|...
T Consensus 74 ~~~~-----~~g----------------d~vi~~~~~~~~~~~~~~~~~~g~~~-------------------------- 106 (366)
T 1m32_A 74 GSAL-----GPQ----------------DKVLIVSNGAYGARMVEMAGLMGIAH-------------------------- 106 (366)
T ss_dssp HHSC-----CTT----------------CCEEEEESSHHHHHHHHHHHHHTCCE--------------------------
T ss_pred HHhc-----CCC----------------CeEEEEeCCCccHHHHHHHHHhCCce--------------------------
Confidence 9771 122 357888888998643211 1112110
Q ss_pred cceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003466 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (818)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~ 637 (818)
..++.+..+ +.| .+.+++.+.+ ..++.+|++... ++..|.+.
T Consensus 107 --~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 107 --HAYDCGEVA-----------RPD------------------VQAIDAILNA------DPTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp --EEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEEC
T ss_pred --EEEeCCCCC-----------CCC------------------HHHHHHHHhc------CCCeEEEEEecc-cCCcceec
Confidence 011111000 122 2567777763 123455655554 56678877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCC-
Q 003466 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGD- 714 (818)
Q Consensus 638 ~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~- 714 (818)
+ +++|.++|++||+++|+||+++ +|.... .... ..+|+++ ++|+++|+ .++|++++++++++.+...
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~~--~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~ 218 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIPM--DIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHS 218 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSCC--CTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCC
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcCc--cccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcCCC
Confidence 6 8999999999999999999995 555431 1222 2478874 68999876 4679999999987654321
Q ss_pred -----------------------hH-------------HH------H----------HHHHHHHHcCCC--eeEE-Eeee
Q 003466 715 -----------------------SK-------------LW------D----------LELIQQISSHRT--VQRV-VALG 739 (818)
Q Consensus 715 -----------------------~~-------------~~------~----------~~l~~~l~~~~~--v~~v-rg~G 739 (818)
.. .+ . +.+.+.+++++. +... ...|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 298 (366)
T 1m32_A 219 RSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP 298 (366)
T ss_dssp SCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCS
T ss_pred CCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCc
Confidence 00 11 1 012233444321 1110 1246
Q ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec----CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 740 TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 740 l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.++.+.+.... ...+..+.+.|.++||++.+. .+.+|+.++..+|++|+++++++|++++++
T Consensus 299 ~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 299 IITAFYSPEDP------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp SEEEEECCCCT------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred eEEEEEcCccC------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 67777775310 012557888999999999874 478999999999999999999999887654
No 129
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.67 E-value=3.7e-16 Score=173.44 Aligned_cols=284 Identities=14% Similarity=0.048 Sum_probs=183.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|+|.+|+.+++. .+.. ....+...++.++|+++++.+.-+.++|++||++|++.+++.+. ..
T Consensus 25 ~~~v~~a~~~~~~--~~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----~~-------- 87 (411)
T 3nnk_A 25 DPRVLRAMSSQLI--GQYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----RP-------- 87 (411)
T ss_dssp CHHHHHHHTSCCC--CTTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhhcccc--cccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----CC--------
Confidence 7999999987752 1211 01235567888999998875422247899999999999999771 12
Q ss_pred CCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
..+||+.+.+|||.... .+...|.. ...++.+..+
T Consensus 88 --------gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 123 (411)
T 3nnk_A 88 --------GDKVLVPVFGRFGHLLCEIARRCRAE----------------------------VHTIEVPWGE-------- 123 (411)
T ss_dssp --------TCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCEEEEecCCchHHHHHHHHHHcCCe----------------------------EEEEecCCCC--------
Confidence 24799999999985322 11111111 0111111100
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++||++
T Consensus 124 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 170 (411)
T 3nnk_A 124 ---VFT------------------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDAL 170 (411)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCCE
Confidence 001 2567777752 25779999997 899998876 88999999999999
Q ss_pred EEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhccCCh-------------------
Q 003466 657 VIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVGDS------------------- 715 (818)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~~~------------------- 715 (818)
+|+||+++ +|.. .+....++ +|+++ ++|+|+|+ .++|++++++++++.+....
T Consensus 171 li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~ 244 (411)
T 3nnk_A 171 FYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMI 244 (411)
T ss_dssp EEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCC
T ss_pred EEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhhcccccccccccccccccCCCC
Confidence 99999985 4322 22233334 56665 55998887 58899999999876543210
Q ss_pred ------------------------H------------HHH---------------HHHHHHHHcCCC-e-e-EEEeeeeE
Q 003466 716 ------------------------K------------LWD---------------LELIQQISSHRT-V-Q-RVVALGTL 741 (818)
Q Consensus 716 ------------------------~------------~~~---------------~~l~~~l~~~~~-v-~-~vrg~Gl~ 741 (818)
. .+. +.+.+.+++.+. + . .....+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 324 (411)
T 3nnk_A 245 YSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNV 324 (411)
T ss_dssp SCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSE
T ss_pred cccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccE
Confidence 0 000 112333444322 1 1 00124566
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+.+... ..+..+.+.|+++ ||+++++ ++.+|+.+ +..+|++||++++++|+++++++.
T Consensus 325 ~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 325 LGVVIPQG--------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp EEEECCTT--------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCC--------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 66666322 1255788888887 9999873 47999998 878899999999999999998753
No 130
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.67 E-value=1.7e-15 Score=166.48 Aligned_cols=283 Identities=15% Similarity=0.113 Sum_probs=181.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.+|+. |.+ | ++.... +..+...+|.++|+++++.+ .+.++++++|++|++.+++
T Consensus 30 ~~i~l~~~~--~~~~~~--~~v--a----~~~~~~-----Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAVE--FQL--T----QQTLNR-----YPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCCC--CCC--C----CCCTTS-----CCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCCC--HhH--h----hhhhcc-----CCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 789998864 567875 455 2 221111 11222467888888877643 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
... . +++.+|++.+.+||+....+.. .|....
T Consensus 94 ~~~-----~---------------~g~d~Vl~~~p~~~~~~~~~~~-~g~~~~--------------------------- 125 (356)
T 1fg7_A 94 AFC-----E---------------PGKDAILYCPPTYGMYSVSAET-IGVECR--------------------------- 125 (356)
T ss_dssp HHC-----C---------------TTTCEEEECSSSCTHHHHHHHH-HTCEEE---------------------------
T ss_pred HHh-----C---------------CCCCEEEEeCCChHHHHHHHHH-cCCEEE---------------------------
Confidence 761 1 2224799999999986543322 221100
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
.++..+.+ -.| .+.+++.+ . ++.+|++... ++..|.+. |
T Consensus 126 -~v~~~~~~-----------~~d------------------~~~l~~~i--------~-~~~~v~l~~p-~nptG~~~-~ 164 (356)
T 1fg7_A 126 -TVPTLDNW-----------QLD------------------LQGISDKL--------D-GVKVVYVCSP-NNPTGQLI-N 164 (356)
T ss_dssp -ECCCCTTS-----------CCC------------------HHHHHTSC--------T-TEEEEEEESS-CTTTCCCC-C
T ss_pred -EeeCCCCC-----------CCC------------------HHHHHHHh--------c-CCCEEEEeCC-CCCCCCCC-C
Confidence 01100000 001 13333322 1 5677777765 78888765 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh-cccCCCCcEEEeccccc-CCccccceeecchHHHhhccCC---
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGD--- 714 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~--- 714 (818)
.+.+++|.++|+ ||+++|+||++++|++....... +.++....+.+++|.+| .| +++|++++++++++.+...
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~ 242 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAP 242 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCC
Confidence 899999999999 99999999999988743333322 33333344669999998 78 7999999999988765321
Q ss_pred ---hH--------------H--HH----------HHHHHHHHcCCCe-eEEEeeeeEEEEEEecCcccCCCchHHHHHHH
Q 003466 715 ---SK--------------L--WD----------LELIQQISSHRTV-QRVVALGTLCAIELQAAGCNAGYGSLYAASLL 764 (818)
Q Consensus 715 ---~~--------------~--~~----------~~l~~~l~~~~~v-~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~ 764 (818)
.. . +. +.+.+.+++++.+ ......|.++.+++. + +..++
T Consensus 243 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~----------~~~l~ 311 (356)
T 1fg7_A 243 YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-A----------SSAVF 311 (356)
T ss_dssp SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-T----------HHHHH
T ss_pred CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-C----------HHHHH
Confidence 00 1 11 1233445556643 223456777766664 2 45688
Q ss_pred HHHHhCCceEee-c-----CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 765 KKLREDGVYMRP-L-----GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 765 ~~l~e~Gvlv~p-~-----g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
+.|.++||++++ + .+.+|++++ +++|+++++++|++
T Consensus 312 ~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 312 KSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 889999999998 3 258999986 58999999988865
No 131
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.66 E-value=4.4e-15 Score=166.69 Aligned_cols=275 Identities=13% Similarity=0.066 Sum_probs=179.2
Q ss_pred ccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 411 ~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
..++|. +|+.++++.. ...++. +....++...+++++|+++++. +.++|++||++|+..|++.+. ..
T Consensus 28 ~~~~~~-~~~~~~~~~~--~~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~-----~~- 94 (412)
T 2cb1_A 28 AAYGFK-TLEEGQERFA--TGEGYV-YARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALL-----RP- 94 (412)
T ss_dssp SBCCCS-SHHHHHHHHH--HCCSCS-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CT-
T ss_pred ceeecC-ChHHHHHHhc--cccCcC-cCCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC-
Confidence 367888 8776665554 222221 2223467899999999999873 589999999999999999761 11
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
...||+.+..||+........... .| ...+.+|
T Consensus 95 ---------------gd~vi~~~~~~~~~~~~~~~~~~~--------------~g-------------~~~~~~~----- 127 (412)
T 2cb1_A 95 ---------------GDEVVAAKGLFGQTIGLFGQVLSL--------------MG-------------VTVRYVD----- 127 (412)
T ss_dssp ---------------TCEEEEETTCCHHHHHHHHHTTTT--------------TT-------------CEEEEEC-----
T ss_pred ---------------CCEEEEeCCCchhHHHHHHHHHHH--------------cC-------------CEEEEEC-----
Confidence 237888888887632111100000 00 0000001
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
. + .+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|
T Consensus 128 ------------~--------~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~ 166 (412)
T 2cb1_A 128 ------------P--------E--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLA 166 (412)
T ss_dssp ------------S--------S--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHH
T ss_pred ------------C--------C--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHH
Confidence 0 0 155666664 36789999997 888898875 99999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecch-----------------------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN----------------------- 705 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~----------------------- 705 (818)
++||+++|+||+|++++... ...+..+|+++ ++|.++|+..++|++++.+
T Consensus 167 ~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (412)
T 2cb1_A 167 EEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE 241 (412)
T ss_dssp HHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred HHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence 99999999999998663222 22234589886 9999987546888877644
Q ss_pred -----HHHhhccC------Ch---H-----------HH----------HHHHHHHHHcCCCeeEE---------------
Q 003466 706 -----AVFDSFVG------DS---K-----------LW----------DLELIQQISSHRTVQRV--------------- 735 (818)
Q Consensus 706 -----~i~~~l~~------~~---~-----------~~----------~~~l~~~l~~~~~v~~v--------------- 735 (818)
++.+.++. +. . .+ .+.+.+.|.+++.+..+
T Consensus 242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~ 321 (412)
T 2cb1_A 242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR 321 (412)
T ss_dssp HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence 23222211 00 0 01 12344556677776655
Q ss_pred ---EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------------------------------CCEE
Q 003466 736 ---VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-------------------------------GNVI 781 (818)
Q Consensus 736 ---rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-------------------------------g~~i 781 (818)
++.|.++.+.+ .+ ...+.+.|.+.||++ .. ...|
T Consensus 322 ~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 389 (412)
T 2cb1_A 322 KYLASGGPILTLDL-GD----------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLV 389 (412)
T ss_dssp HHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEE
T ss_pred HhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeE
Confidence 35778999998 43 223455666778886 32 3689
Q ss_pred EEECCCCChHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~ 803 (818)
|++.....++++|+.++++|++
T Consensus 390 R~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 390 RVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEECCSSCHHHHHHHHHHHHHC
T ss_pred EEEeccCCHHHHHHHHHHHHhh
Confidence 9999999999999999988864
No 132
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=99.66 E-value=1.7e-16 Score=173.23 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCC-EEEEEcCCCChH-----------HHHHHHHHHHHh-----CCCcEE
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVV 282 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~l~~-----~~~~v~ 282 (818)
.+|+++|||+||++.|. .+.+ ++|++.++.| +|||.+.++|++ ++++.+++.+.. .+++|+
T Consensus 225 ~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~ 302 (349)
T 2obn_A 225 NYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVV 302 (349)
T ss_dssp TCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEE
T ss_pred CCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEE
Confidence 39999999999999999 5555 8999999988 889999999999 999999999976 789999
Q ss_pred EEEEccCC------CCCHHHHHHhhcCCCCEEe-cC
Q 003466 283 AVVFEDHG------LVNEVPLMSYLRNRVPVLV-LP 311 (818)
Q Consensus 283 gvi~N~~~------~~~~~~l~~~~~~~~pvlg-iP 311 (818)
||++|.+. .++.+++++.+ ++||++ +-
T Consensus 303 Gi~lN~~~~~~~~~~~~~~~ie~~~--glPv~d~~r 336 (349)
T 2obn_A 303 GIALNTAHLDEYAAKEAIAHTIAET--GLPCTDVVR 336 (349)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHH--CSCEECHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEec
Confidence 99999973 24667777777 999998 53
No 133
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.66 E-value=7.9e-15 Score=164.91 Aligned_cols=307 Identities=10% Similarity=0.082 Sum_probs=179.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChhHHHHHHHHHhcc----CCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~----~~~~l~~v~f~~SGseA 473 (818)
++||+.+| .+.-.. +|.|++|+.+++++++... ..++. .....+|.+.|++++ +.. .+.++|++++++|
T Consensus 57 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~a 131 (432)
T 3ei9_A 57 QVISLGIG---DTTEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCD 131 (432)
T ss_dssp CCEECSSC---CCCSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHH
T ss_pred CeEEccCC---CCCCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHH
Confidence 88999885 333345 8999999999998754321 11111 223355666666653 322 3689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..+..++ +.| ..|++.+.+||+....+........+... +. . .
T Consensus 132 l~~l~~l~------~~g----------------d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~-~----~------ 175 (432)
T 3ei9_A 132 ISRLQVMF------GSN----------------VTIAVQDPSYPAYVDSSVIMGQTGQFNTD---VQ-K----Y------ 175 (432)
T ss_dssp HHHHHHHH------CTT----------------CCEEEEESCCTHHHHHHHHHTCSCCEETT---TT-E----E------
T ss_pred HHHHHHHc------CCC----------------CEEEEeCCCCHHHHHHHHHcCCccccccc---cc-c----c------
Confidence 88643322 122 37899999999865443322211110000 00 0 0
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
.....++.... ++ +. . .+++ ..++.+|++... ++..
T Consensus 176 ---~~~~~~~~~~~-------------~~----~~-------------~----~l~~------~~~~~~v~l~~p-~NPt 211 (432)
T 3ei9_A 176 ---GNIEYMRCTPE-------------NG----FF-------------P----DLST------VGRTDIIFFCSP-NNPT 211 (432)
T ss_dssp ---TTCEEEECCGG-------------GT----TS-------------C----CGGG------CCCCSEEEEESS-CTTT
T ss_pred ---CceEEeccCcc-------------cC----Cc-------------C----Chhh------CCCCCEEEEeCC-CCCC
Confidence 00011111100 00 00 0 0111 124456666654 7888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc----CCCCcEEEeccccc-CCccccceeecchHH-
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNAV- 707 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~----gv~PDivtlgKgLg-gGy~PlsAvl~~~~i- 707 (818)
|.+. +.+.+++|.++|++||+++|+||++++|...+.......+ +....+.++||.+| .| +++|++++++++
T Consensus 212 G~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~ 289 (432)
T 3ei9_A 212 GAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLL 289 (432)
T ss_dssp CCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCB
T ss_pred CCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHh
Confidence 8766 7888999999999999999999999988655543332222 22334568999998 78 799999998876
Q ss_pred -------HhhccC--------ChH--------HH------------------HHHHHHHHHcCCCeeEEEe-eeeEEEEE
Q 003466 708 -------FDSFVG--------DSK--------LW------------------DLELIQQISSHRTVQRVVA-LGTLCAIE 745 (818)
Q Consensus 708 -------~~~l~~--------~~~--------~~------------------~~~l~~~l~~~~~v~~vrg-~Gl~~~ie 745 (818)
.+.+.. ... .+ .+.+.+.+++++ +.-+.+ .|.++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~ 368 (432)
T 3ei9_A 290 YSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGKNAPYVWVH 368 (432)
T ss_dssp CTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECSSSSEEEEE
T ss_pred hcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcceEEEEE
Confidence 343321 000 00 011233444443 322332 45566566
Q ss_pred EecCcccCCCchHHHHHHHHHHHhC-CceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+... .+..++..|+++ ||++.|+ .+.+|++. ..++++|++++++|++.-
T Consensus 369 ~~~~---------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 369 FPNQ---------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLY 425 (432)
T ss_dssp CTTS---------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred CCCC---------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHh
Confidence 5421 244567777754 9999873 37899984 568999999999987653
No 134
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=4.1e-16 Score=174.73 Aligned_cols=319 Identities=10% Similarity=-0.023 Sum_probs=191.2
Q ss_pred ceeecccccccccCCCCCCHH---------HHHHHH--HhhhhcccccCCCC--CChhHHHHHHHHHhccCCCCCCcEEE
Q 003466 400 QQFDACASWWTQGPDATLQIE---------LARDMG--YTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYF 466 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~---------V~eAi~--~q~~~~~~~~~~~~--~~~~~~eLae~L~~~~~~~~l~~v~f 466 (818)
+|.|+.+.....+||++ +|. |.+|+. +.++ .+.. ...+ ...-..+|.+.|+++++-. .+.+++
T Consensus 17 ~~~~~~~~~~~i~l~~g-~p~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~ 92 (423)
T 3ez1_A 17 AYEAFKARGLNLNMQRG-QPADADFDLSNGLLTVLGAEDVRM-DGLD-LRNYPGGVAGLPSARALFAGYLDVK-AENVLV 92 (423)
T ss_dssp HHHHHHHHTCCEESCCC-CCCHHHHHTTGGGGGSCCGGGCEE-TTEE-TTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEE
T ss_pred HHHHhhcCCceEecCCC-CCChHhCCCcHHHHHHHhhhHHhh-cchh-hhCCCCCCCChHHHHHHHHHHhCCC-hhhEEE
Confidence 56666666556666665 554 555553 2222 1111 1112 1222467778888877532 368999
Q ss_pred eCChhHHHH--HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCC
Q 003466 467 SDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (818)
Q Consensus 467 ~~SGseA~e--~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~ 544 (818)
+++|++|+. .+++...+ +..|. .++ -......|++.+.+||+...... ..|..
T Consensus 93 t~G~~~al~~~~~~~~l~~---~~~g~-----~~~--~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~-------------- 147 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALLH---GVRGS-----TGP--WLSQTPKMIVTVPGYDRHFLLLQ-TLGFE-------------- 147 (423)
T ss_dssp CSSCHHHHHHHHHHHHHHT---CCTTC-----SSC--GGGGCCEEEEEESCCHHHHHHHH-HHTCE--------------
T ss_pred eCCcHHHHHHHHHHHHHhc---cCCCc-----ccc--ccCCCCEEEEcCCCcHHHHHHHH-HcCCE--------------
Confidence 999999997 77776521 00110 000 00002479999999988543322 22211
Q ss_pred CcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 003466 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (818)
Q Consensus 545 ~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI 624 (818)
.+.+|... + -.| .+.|++.+++ ..++++|+
T Consensus 148 ----------------~~~v~~~~--------~--g~d------------------~~~l~~~l~~------~~~~~~v~ 177 (423)
T 3ez1_A 148 ----------------LLTVDMQS--------D--GPD------------------VDAVERLAGT------DPSVKGIL 177 (423)
T ss_dssp ----------------EEEEEEET--------T--EEC------------------HHHHHHHHHS------CTTEEEEE
T ss_pred ----------------EEeccCCC--------C--CCC------------------HHHHHHHHhh------CCCceEEE
Confidence 01111000 0 001 2567777752 34688998
Q ss_pred EccccccCCCcccCCHHHHHHHHHHH-HhcCCcEEEeecccCcccCC-------ccchh----cccCCCCcEEEeccccc
Q 003466 625 IEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETTA----DLLGCVPDIACYGKLLT 692 (818)
Q Consensus 625 vEPV~~g~gG~~~~p~~fl~~LreLc-~~~gilLI~DEV~TGfGRtG-------~~~a~----e~~gv~PDivtlgKgLg 692 (818)
+.|..++..|.+. +.+.+++|.++| ++||+++|+||+++.+...+ ..+.. +..+....+.++||.+.
T Consensus 178 ~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 256 (423)
T 3ez1_A 178 FVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF 256 (423)
T ss_dssp ECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc
Confidence 8986678788776 677799999999 99999999999998432222 22222 12233344779999877
Q ss_pred CCccccceeecchHHHhhccCChH----------------HHHH-------H--------------HHHHHHc----CC-
Q 003466 693 GGVIPLAATLATNAVFDSFVGDSK----------------LWDL-------E--------------LIQQISS----HR- 730 (818)
Q Consensus 693 gGy~PlsAvl~~~~i~~~l~~~~~----------------~~~~-------~--------------l~~~l~~----~~- 730 (818)
+| +++|++++++++++.+..... .+.. . +.+.+.+ .+
T Consensus 257 ~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (423)
T 3ez1_A 257 AG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGE 335 (423)
T ss_dssp SS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 78 799999999998776532110 1111 0 1111211 22
Q ss_pred CeeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCCCChHHHHHHHH
Q 003466 731 TVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGPCSSPEVCSQLL 798 (818)
Q Consensus 731 ~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl~~t~edId~~~ 798 (818)
.+.- ....|.++.+++... .+..+.+.|.++||++.+. .+.+|+.++.. ++++|++++
T Consensus 336 ~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~ 405 (423)
T 3ez1_A 336 YATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAM 405 (423)
T ss_dssp SEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHH
T ss_pred ceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHH
Confidence 1211 123577777777532 1456778899999999881 27899999765 999999999
Q ss_pred HHHHHHHHHHH
Q 003466 799 LKLYQRLEEFD 809 (818)
Q Consensus 799 ~~l~~~l~~l~ 809 (818)
++|.++++++.
T Consensus 406 ~~l~~~l~~~~ 416 (423)
T 3ez1_A 406 QVVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 135
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.65 E-value=8.4e-16 Score=168.20 Aligned_cols=297 Identities=10% Similarity=0.077 Sum_probs=188.4
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcc---cc---cCCCCCChhHHHHHHH-HHhccCCCCCCcEEEeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~---~~---~~~~~~~~~~~eLae~-L~~~~~~~~l~~v~f~~SGse 472 (818)
.|||+.+ +.|+. +|++.+|+.++++... +. .......+...++.++ |+++++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCCC-CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 4666632 45677 9999999999987652 10 1112345678899999 9999874 38999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++.++ .. ..+|++.+.+||+.... +...|...
T Consensus 81 a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~~--------------------- 117 (371)
T 2e7j_A 81 AKFAVMHSLA-----KK----------------DAWVVMDENCHYSSYVA-AERAGLNI--------------------- 117 (371)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEETTCCHHHHHH-HHHTTCEE---------------------
T ss_pred HHHHHHHHHh-----CC----------------CCEEEEccCcchHHHHH-HHHcCCeE---------------------
Confidence 9999999871 12 24789999999986544 33222210
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
..++.|... +. --| .+.+++.+.+. ...+++++|++++. ++.
T Consensus 118 -------~~v~~~~~~--------~~-~~d------------------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 118 -------ALVPKTDYP--------DY-AIT------------------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp -------EEECCCCTT--------TC-CCC------------------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred -------EEeecccCC--------CC-CcC------------------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 011100000 00 001 24566666531 01146889999997 898
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhh
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDS 710 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~ 710 (818)
.|.+.+ +++|.++|++||+++|+||+++. |..+ .....++ +|++ +++|.+++|. ++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~~~~-~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEIG--ADFIVGSGHKSMAASG-PIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHHT--CSEEEEEHHHHSSCCS-SCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhcC--CCEEEecCCcCCCCCC-CcEEEEEechhhhh
Confidence 898886 69999999999999999999964 4443 2223344 6776 4699999984 99999999988665
Q ss_pred -ccC--C---------hH---------------HHH---------H----HHHHHHHcCCCeeEEEe---eeeEEEEEEe
Q 003466 711 -FVG--D---------SK---------------LWD---------L----ELIQQISSHRTVQRVVA---LGTLCAIELQ 747 (818)
Q Consensus 711 -l~~--~---------~~---------------~~~---------~----~l~~~l~~~~~v~~vrg---~Gl~~~iel~ 747 (818)
+.. . .. .+. . .+.+.+++.+ +.-+.. .|.++.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~ 308 (371)
T 2e7j_A 230 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAE 308 (371)
T ss_dssp TTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECH
T ss_pred hccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCccCceEEEECC
Confidence 321 0 11 111 0 1122333332 221111 3566666653
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEee--------c--CCEEE-EECCCC-ChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRP--------L--GNVIY-LMCGPC-SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p--------~--g~~ir-~~ppl~-~t~edId~~~~~l~~~l~~l 808 (818)
+ +..+.+.|.++||++.+ . .+.+| +.++.. +|++|+++++++|+++++++
T Consensus 309 -~----------~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 309 -V----------LYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp -H----------HHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -C----------HHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 1 45678888899999876 1 36688 888887 89999999999999987653
No 136
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.65 E-value=6.3e-15 Score=164.14 Aligned_cols=300 Identities=13% Similarity=0.028 Sum_probs=181.9
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChhHHHHHHHHHhcc--C-CCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~-~~~~~-~~~~~eLae~L~~~~--~-~~~l~~v~f~~SGseA~ 474 (818)
++||+.++.. .++ . +|.|.+|+.++++++.... ...+. .....+|.+.|++++ + .. .+.+++++++++|+
T Consensus 34 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP-L-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC-C-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 7888877542 233 4 8999999999988753211 11121 233567888888873 3 11 36899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~ 554 (818)
+.++++. ..| .+|++.+.+||+.... +...|...
T Consensus 109 ~~~~~~~------~~g----------------d~Vl~~~p~y~~~~~~-~~~~g~~~----------------------- 142 (400)
T 3asa_A 109 FRLLSFF------GPN----------------QTVAIQDPSYPAYLDI-ARLTGAKE----------------------- 142 (400)
T ss_dssp HHHHHHH------CSS----------------CEEEEEESCCHHHHHH-HHHTTCSE-----------------------
T ss_pred HHHHHHc------CCC----------------CEEEECCCCcHHHHHH-HHHcCCcc-----------------------
Confidence 9876543 122 3799999999985432 22222110
Q ss_pred ccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003466 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (818)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG 634 (818)
...++.... + .+. . .++ . ..++++|+++.. ++..|
T Consensus 143 ----~~~~~~~~~-------------~----~~~-------------~----~l~-----~-~~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 143 ----IIALPCLQE-------------N----AFF-------------P----EFP-----E-DTHIDILCLCSP-NNPTG 177 (400)
T ss_dssp ----EEEEECCGG-------------G----TTC-------------C----CCC-----T-TCCCSEEEEESS-CTTTC
T ss_pred ----eEecccchh-------------c----Ccc-------------c----Chh-----h-ccCccEEEEeCC-CCCCC
Confidence 000111000 0 000 0 011 0 134667777765 78888
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhcccCCCCc----EEEeccccc-CCccccceeecchHH-
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV- 707 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~gv~PD----ivtlgKgLg-gGy~PlsAvl~~~~i- 707 (818)
.+. |.+.+++|.++|++||+++|+||++++|+..|.. .....++-.+| +.+++|.+| .| +++|++++++++
T Consensus 178 ~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~ 255 (400)
T 3asa_A 178 TVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQELT 255 (400)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTCB
T ss_pred CcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhhc
Confidence 765 7999999999999999999999999989776652 22222222234 568999998 78 799999998877
Q ss_pred ------Hhhcc---------CChH--------HH---------------HHHHHHHHHcCCCeeEEEe-eeeEEEEE-Ee
Q 003466 708 ------FDSFV---------GDSK--------LW---------------DLELIQQISSHRTVQRVVA-LGTLCAIE-LQ 747 (818)
Q Consensus 708 ------~~~l~---------~~~~--------~~---------------~~~l~~~l~~~~~v~~vrg-~Gl~~~ie-l~ 747 (818)
++.+. .... .+ .+.+.+.+++.+ +.-+.+ .|.++.++ +.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~ 334 (400)
T 3asa_A 256 YADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATG-FEVFGGEHAPYLWVKPTQ 334 (400)
T ss_dssp CTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTT-CEEEECSSSSEEEEECCC
T ss_pred cchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCceEEEEeccC
Confidence 43221 1111 11 112334455553 332333 35666666 43
Q ss_pred cCcccCCCchHHHHHHHHHHHh-CCceEeec-------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLRE-DGVYMRPL-------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e-~Gvlv~p~-------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
... .+..++..|++ +||++.++ .+.+|++ +..++++|++++++|.+++++.
T Consensus 335 ~~~--------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 335 ANI--------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp TTC--------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred CCC--------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 210 12246677775 59999873 3679998 4678999999999999887654
No 137
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.65 E-value=3.8e-15 Score=166.45 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=166.7
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|+++|+++.+. +.+++++||++|++.|++.+. +. ..+||+.+..|||.
T Consensus 63 ~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~-----~~----------------gd~Vi~~~~~y~~~ 118 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAML-----RP----------------GDHVVIPDDAYGGT 118 (392)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCcchH
Confidence 4578889999999999874 589999999999999999761 12 23799999999874
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......... ..+ .....+| .+|
T Consensus 119 ~~~~~~~~~--------------~~g-------------~~~~~v~--------------~~d----------------- 140 (392)
T 3qhx_A 119 FRLIDKVFT--------------GWN-------------VEYTPVA--------------LAD----------------- 140 (392)
T ss_dssp HHHHHHTGG--------------GGT-------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH--------------hcC-------------cEEEEeC--------------CCC-----------------
Confidence 321101000 000 0000011 122
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|+++|++||+++|+||+++.+ +.....+
T Consensus 141 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~~ 200 (392)
T 3qhx_A 141 -LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPLS 200 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGGG
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChHH
Confidence 255666664 37899999997 888898876 999999999999999999999622 2223345
Q ss_pred CCCcEEE--ecccccCCc-cccceeecc-hHHHhhccCChH-----------------------HH------HHHHHHHH
Q 003466 680 CVPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSK-----------------------LW------DLELIQQI 726 (818)
Q Consensus 680 v~PDivt--lgKgLggGy-~PlsAvl~~-~~i~~~l~~~~~-----------------------~~------~~~l~~~l 726 (818)
..+|+++ ++|.+|++. +.+|+++++ +++++.+..... .+ .+.+.+.+
T Consensus 201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L 280 (392)
T 3qhx_A 201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFL 280 (392)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5689987 999999743 577888887 577665432111 00 01234556
Q ss_pred HcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------
Q 003466 727 SSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------- 777 (818)
Q Consensus 727 ~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------- 777 (818)
+.++.+..| +|.|.++++++..+. ..+..+...|...|+.+..+
T Consensus 281 ~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~ 353 (392)
T 3qhx_A 281 AEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-------TAAEQLCAKTNIFILAESLGSVESLIEHPSA 353 (392)
T ss_dssp HTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-------HHHHHHHHHCSSSEECSCCCCSSCEEECGGG
T ss_pred hcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-------HHHHHHHHhCCCceECCCCCCCCceeeCccc
Confidence 778877666 667999999997531 34667777777666554321
Q ss_pred --------------CCEEEEECCCCChHHHHHHHHHHH
Q 003466 778 --------------GNVIYLMCGPCSSPEVCSQLLLKL 801 (818)
Q Consensus 778 --------------g~~ir~~ppl~~t~edId~~~~~l 801 (818)
.+.||++.....++++|+.+.++|
T Consensus 354 ~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 354 MTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp TSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 245777776655555555555544
No 138
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.65 E-value=3.2e-15 Score=164.99 Aligned_cols=294 Identities=13% Similarity=0.056 Sum_probs=189.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|+|..+ .++. +|++.+|+.++++. +.. ....+...++.++|+++++.+ .+.++|+++|++|++.+++
T Consensus 10 ~yl~~~~------~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTAG------PVNA-YPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSSS------CCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecCC------CcCC-CHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 5777643 4567 99999999988764 110 012345678889999988753 3689999999999999999
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~ 558 (818)
.+. ..| .+|++.+.+||+.....+ ...|...
T Consensus 78 ~~~-----~~g----------------d~Vl~~~~~~~~~~~~~~~~~~g~~~--------------------------- 109 (392)
T 2z9v_A 78 SLI-----SPD----------------DVVLNLASGVYGKGFGYWAKRYSPHL--------------------------- 109 (392)
T ss_dssp HHC-----CTT----------------CCEEEEESSHHHHHHHHHHHHHCSCE---------------------------
T ss_pred Hhc-----CCC----------------CEEEEecCCcccHHHHHHHHHcCCce---------------------------
Confidence 761 122 368999999998531111 1111110
Q ss_pred ceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
..++.+... ..| .+.+++.+++ ..++++|++++. ++..|.+.+
T Consensus 110 -~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 110 -LEIEVPYNE-----------AID------------------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp -EEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred -EEeeCCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 011111000 011 2566777752 135678999987 888888876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC---
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG--- 713 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~--- 713 (818)
+++|.++|++||+++|+||+++ +|... +....+ .+|++++ +|.++|+ .++|++++++++++.+..
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~~~~~ 222 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMKANPL 222 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHHTCTT
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhhhccC
Confidence 8999999999999999999995 54332 122223 4788765 6999876 467899999988764421
Q ss_pred -----------------Ch-H------------------HHH---------------HHHHHHHHcCCCeeEEE-----e
Q 003466 714 -----------------DS-K------------------LWD---------------LELIQQISSHRTVQRVV-----A 737 (818)
Q Consensus 714 -----------------~~-~------------------~~~---------------~~l~~~l~~~~~v~~vr-----g 737 (818)
.. . .+. +.+.+.+++.+ +.-+. .
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 301 (392)
T 2z9v_A 223 APRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMG-LSVWAASDSIA 301 (392)
T ss_dssp SCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGB
T ss_pred CCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC-CeeccCCcccc
Confidence 00 0 000 11223344332 11111 1
Q ss_pred eeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 738 LGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 738 ~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
.+.++.+.+... ..+..+.+.|.++ ||++.+. .+.+|+.+.. .+|++|+++++++|+++++++.
T Consensus 302 ~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 302 SPTTTAVRTPDG--------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCC--------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 356666666321 1245688899988 9999874 4789999644 7899999999999999988764
No 139
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.64 E-value=4.9e-16 Score=173.02 Aligned_cols=179 Identities=10% Similarity=0.021 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~g 679 (818)
+.+++.+.+ .++++|++ +|. . |...+ +++|+++|++||+++|+||+|+ |+.+.|.+.....
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~---~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-- 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-Y---SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-- 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-C---CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-c---CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--
Confidence 567777752 23567788 554 3 23332 8999999999999999999974 6666665433221
Q ss_pred CCCcEEE--ecccccCCccccceeecch---HHHhhccC--------Ch-H----------------HH----------H
Q 003466 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSFVG--------DS-K----------------LW----------D 719 (818)
Q Consensus 680 v~PDivt--lgKgLggGy~PlsAvl~~~---~i~~~l~~--------~~-~----------------~~----------~ 719 (818)
.+|+++ ++|+++|. ..|++++++ ++.+.+.. .. . .+ .
T Consensus 222 -~~di~~~s~sK~~~g~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 298 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAGP--RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNA 298 (420)
T ss_dssp -TSSEEEEESSGGGCSC--SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred -cCCEEEeecccCCCCC--CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 289987 66999742 346677776 66554321 10 0 00 0
Q ss_pred HHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------c----CCEEEEECC
Q 003466 720 LELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-------L----GNVIYLMCG 786 (818)
Q Consensus 720 ~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-------~----g~~ir~~pp 786 (818)
+.+.+.+.+.+ +.-+. ..+.++.+.+.... ..+..+.+.|.++||++.+ . .+.+|+.++
T Consensus 299 ~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~ 370 (420)
T 3gbx_A 299 KAMVEVFLNRG-YKVVSGGTENHLFLLDLVDKN-------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSP 370 (420)
T ss_dssp HHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECH
T ss_pred HHHHHHHHhcC-CeeccCCCCCeEEEEEcCCCC-------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecc
Confidence 12233344432 21111 24556666654321 1245567788899999987 1 256999998
Q ss_pred CC----ChHHHHHHHHHHHHHHHHHH
Q 003466 787 PC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 787 l~----~t~edId~~~~~l~~~l~~l 808 (818)
.. +++++|++++++|++++++.
T Consensus 371 ~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 371 AVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 76 45899999999999998664
No 140
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.6e-15 Score=171.16 Aligned_cols=296 Identities=12% Similarity=0.026 Sum_probs=186.5
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhc
Q 003466 415 ATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~ 488 (818)
++ ++.+.+++.++++.+........ ..+...++++++++++|.+ ..+.++|+++|++|+..|++.+ +.++.+
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~-~~~~~~ 152 (497)
T 3mc6_A 75 HG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSA-KMYALH 152 (497)
T ss_dssp CC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH-HHHHHH
T ss_pred CC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH-HHHHHh
Confidence 45 68999999999987544321111 1244557778888887643 1257999999999999999998 444322
Q ss_pred -ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-
Q 003466 489 -HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE- 566 (818)
Q Consensus 489 -~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~- 566 (818)
.|. .+..|++ ....|.+...++...|... ..++...
T Consensus 153 ~~g~-------------~~~~Vi~-~~~~h~~~~~~~~~~G~~~----------------------------~~v~~~~~ 190 (497)
T 3mc6_A 153 HRGI-------------TEPEIIA-PVTAHAGFDKAAYYFGMKL----------------------------RHVELDPT 190 (497)
T ss_dssp HSCC-------------SSCEEEE-ETTSCHHHHHHHHHSCCEE----------------------------EEECBCTT
T ss_pred cCCC-------------CCceEEE-eCCccHHHHHHHHHcCCeE----------------------------EEEecCcc
Confidence 221 1234444 5556665555555444321 0111110
Q ss_pred hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHH
Q 003466 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (818)
Q Consensus 567 ~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~L 646 (818)
.+ ..|+ +.|++.+. .++++|+++.. ++..|.+.+ +++|
T Consensus 191 ~~-----------~~d~------------------~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~i 228 (497)
T 3mc6_A 191 TY-----------QVDL------------------GKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEGL 228 (497)
T ss_dssp TC-----------SBCT------------------TTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTTT
T ss_pred cC-----------cCCH------------------HHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHHH
Confidence 00 0111 23444443 35789999986 778888876 8899
Q ss_pred HHHHHhcCCcEEEeecccCcccC-------Ccc--chhcccCCCCcEEE--ecccccCCccccceeecchHHHhhcc---
Q 003466 647 VKECQNRKIPVIFDEVFTGFWRL-------GVE--TTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV--- 712 (818)
Q Consensus 647 reLc~~~gilLI~DEV~TGfGRt-------G~~--~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~--- 712 (818)
+++|++||++||+||+++|+.+. |.. +.....|+ |+++ +.|.+.+| .++|+++++++.+....
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~~~~~ 305 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMHQYYV 305 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTTTSCC
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhhhhcc
Confidence 99999999999999999876543 222 33444555 6665 45988777 68899998876654321
Q ss_pred -----CC---------------h--H-----H---------------HHHHHHHHHHc-CCCeeEE-EeeeeEEEEEEec
Q 003466 713 -----GD---------------S--K-----L---------------WDLELIQQISS-HRTVQRV-VALGTLCAIELQA 748 (818)
Q Consensus 713 -----~~---------------~--~-----~---------------~~~~l~~~l~~-~~~v~~v-rg~Gl~~~iel~~ 748 (818)
.. . . . ..+.+.+.+++ .+.+.-+ ...+.++.+....
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~ 385 (497)
T 3mc6_A 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT 385 (497)
T ss_dssp BTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTT
T ss_pred cccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCC
Confidence 00 0 0 0 01123445555 3543322 2344555554321
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeecC--CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPLG--NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|.++||+++... +.+|+.++ .+|++|+++++++|+++++++.
T Consensus 386 ---------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 386 ---------LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp ---------TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHH
Confidence 125678999999999988643 56888888 7899999999999999998875
No 141
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.64 E-value=1.4e-15 Score=173.17 Aligned_cols=306 Identities=14% Similarity=0.065 Sum_probs=197.0
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhccccc----CC--CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FP--ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~----~~--~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA 473 (818)
.|+|.. .+|+. ++.+.+++.++++.+.... .. ....+...++.++|+++++.. .+.++|++++++|
T Consensus 69 iyld~~------~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFLGN------SLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECBTT------TSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEecCC------ccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 677754 57888 8899999998887654221 10 122345567888888888753 3689999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCC
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+..+++... +.| ..+.+||+.+.+||+......+. .|......
T Consensus 141 l~~~~~~~~-----~~~-------------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~---------------- 186 (465)
T 3e9k_A 141 LHLLMLSFF-----KPT-------------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES---------------- 186 (465)
T ss_dssp HHHHHHHHC-----CCC-------------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH----------------
T ss_pred HHHHHHHhc-----ccc-------------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee----------------
Confidence 999998761 111 23567999999999865432222 12110000
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
....++.+..+ ..| .+.+++.|++ +.+++++|+++.+ +
T Consensus 187 -------~v~~~~~~~~~-----------~~d------------------~~~l~~~i~~-----~~~~~~lv~~~~~-~ 224 (465)
T 3e9k_A 187 -------MRMIKPREGEE-----------TLR------------------IEDILEVIEK-----EGDSIAVILFSGV-H 224 (465)
T ss_dssp -------EEEECCCTTCS-----------SCC------------------HHHHHHHHHH-----HGGGEEEEEEESB-C
T ss_pred -------eEEEecCCCCC-----------ccC------------------HHHHHHHHHh-----cCCCeEEEEEeCc-c
Confidence 00000000000 001 2566777752 2357899999997 9
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVF 708 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~ 708 (818)
+..|.+.+ +++|.++|++||+++|+|++|+ +|... .....++ .|+++ +.|.+.||...+|++.+++++.
T Consensus 225 n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~~--~D~~~~s~~K~l~~gp~~~g~l~~~~~~~ 295 (465)
T 3e9k_A 225 FYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDWG--VDFACWCSYKYLNAGAGGIAGAFIHEKHA 295 (465)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CCEEEECSSSTTCCCTTCCCEEEECGGGT
T ss_pred cCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CchhhcC--CCEEEECcccccccCCCceEEEEEcHHHH
Confidence 99999886 8999999999999999999995 43322 1222233 57764 5699976645678888988886
Q ss_pred hhccCC-------------------------------hH-------------HH---------------HHHHHHHHHcC
Q 003466 709 DSFVGD-------------------------------SK-------------LW---------------DLELIQQISSH 729 (818)
Q Consensus 709 ~~l~~~-------------------------------~~-------------~~---------------~~~l~~~l~~~ 729 (818)
+.+... .. .+ .+.+.+.++++
T Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 296 HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 544210 00 00 01122333332
Q ss_pred ----------CCeeE-----EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-CCEEEEEC-CCCChHH
Q 003466 730 ----------RTVQR-----VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-GNVIYLMC-GPCSSPE 792 (818)
Q Consensus 730 ----------~~v~~-----vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-g~~ir~~p-pl~~t~e 792 (818)
+.+.- .+..|.++.+.+..+ +..+.+.|.++||++... .+.+|+.| |+.+|++
T Consensus 376 ~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~e 445 (465)
T 3e9k_A 376 YGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFH 445 (465)
T ss_dssp CC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHH
T ss_pred ccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHH
Confidence 33221 223477888877522 234788899999999875 48999999 8999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003466 793 VCSQLLLKLYQRLEEF 808 (818)
Q Consensus 793 dId~~~~~l~~~l~~l 808 (818)
||++++++|++++++.
T Consensus 446 di~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 446 DVYKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 142
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.64 E-value=1.3e-15 Score=166.48 Aligned_cols=300 Identities=13% Similarity=0.036 Sum_probs=183.0
Q ss_pred cceeecccccccccCCCCCCHHHHHHHHHhhhhccc-cc-CCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHH
Q 003466 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (818)
Q Consensus 399 ~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~-~~-~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ 476 (818)
++|+|..+ .|.++|++.||.+.+++++++++++. .. ......+...+|+++|+++++. +..++++||++|++.
T Consensus 3 ~~~~~~~~--~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~ 77 (357)
T 3lws_A 3 NRLRTSFQ--QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQV 77 (357)
T ss_dssp CHHHHHHH--TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHH
T ss_pred chhhhHHH--hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHH
Confidence 37888332 37889998899999999998887541 11 0011246778999999999874 566777999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccc---cccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~al---s~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
|++.+.. ++..++|..+..||....... ...|.
T Consensus 78 al~~~~~--------------------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~------------------------ 113 (357)
T 3lws_A 78 ALRIWSD--------------------ETDNRTVAYHPLCHLEIHEQDGLKELHPI------------------------ 113 (357)
T ss_dssp HHHHHHH--------------------HHTCCEEEECTTCHHHHSSTTHHHHHSSC------------------------
T ss_pred HHHHHhh--------------------cCCCcEEEecccceeeeeccchhhhccCc------------------------
Confidence 9997721 111226667777776443211 11111
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
..+.+|.... ..| .+.+++. . ++++|++++. ++..
T Consensus 114 ------~~~~v~~~~~----------~~d------------------~~~l~~~---------~-~~~~v~~~~p-~np~ 148 (357)
T 3lws_A 114 ------ETILVGAADR----------LMT------------------LDEIKAL---------P-DIACLLLELP-QREI 148 (357)
T ss_dssp ------EEEECSCTTS----------CCC------------------HHHHHTC---------C-SCSEEEEESS-BGGG
T ss_pred ------EEEEecCCCC----------CcC------------------HHHHhcC---------c-CcceEEEEcc-cccC
Confidence 1111121000 011 1333321 2 2678999986 6654
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeeccc-----CcccCCccchhcccCCCCcE--EEecccccCCccccceeecchH
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFT-----GFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNA 706 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~T-----GfGRtG~~~a~e~~gv~PDi--vtlgKgLggGy~PlsAvl~~~~ 706 (818)
|..+++.+.+++|.++|++||+++|+||++. ++|++...+. + ..|+ .+++|+++|. ..|.++++++
T Consensus 149 ~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~----~~d~~~~s~sK~~~~~--~gg~~~~~~~ 221 (357)
T 3lws_A 149 GGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G----LFDSIYISFYKGLGGI--AGAILAGPAA 221 (357)
T ss_dssp TSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T----TSSEEEEESSSTTCCS--SCEEEEECHH
T ss_pred CceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h----cCCEEEEeccccCCCC--ceEEEEcCHH
Confidence 3345589999999999999999999999874 3344333222 1 2344 4999999653 2266788888
Q ss_pred HHhhccC-------C----hH-------H-------------HHHHHHHHHHcCCCeeEE--EeeeeEEEEEEecCcccC
Q 003466 707 VFDSFVG-------D----SK-------L-------------WDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNA 753 (818)
Q Consensus 707 i~~~l~~-------~----~~-------~-------------~~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~~~~ 753 (818)
+++.+.. . .. . ..+.+.+.+++++.+.-. ...+.++-+.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--- 298 (357)
T 3lws_A 222 FCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQA--- 298 (357)
T ss_dssp HHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCH---
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCCh---
Confidence 8766531 0 10 0 012234555666555321 234555656664321
Q ss_pred CCchHHHHHHHHHHHhCCceEeec----C--CEEEEECCC---CChHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLREDGVYMRPL----G--NVIYLMCGP---CSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~Gvlv~p~----g--~~ir~~ppl---~~t~edId~~~~~l~~~l 805 (818)
...+..+.+.|.++||++++. . ..+|+.... ..++++|++++++|.+++
T Consensus 299 ---~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 299 ---ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp ---HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 122567788899999999864 1 367776543 367889999999887764
No 143
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.64 E-value=1.4e-14 Score=161.74 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+++++|+++.+. +.+++++||++|+..|++.+. ..| .+||+.+.+||+.
T Consensus 62 ~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~g----------------d~vl~~~~~~~~~ 117 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLL-----RPG----------------DEVLLGNTLYGCT 117 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----cCC----------------CEEEEeCCCchhH
Confidence 4578899999999999874 588889999999999999761 122 3788999988875
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......+... . + .....+| .+|
T Consensus 118 ~~~~~~~~~~----~----------g-------------~~~~~~~--------------~~d----------------- 139 (398)
T 1gc0_A 118 FAFLHHGIGE----F----------G-------------VKLRHVD--------------MAD----------------- 139 (398)
T ss_dssp HHHHHHTGGG----G----------T-------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHHH----c----------C-------------CEEEEEC--------------CCC-----------------
Confidence 4322111100 0 0 0000001 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ ..+.. ..++
T Consensus 140 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~---~~~~ 201 (398)
T 1gc0_A 140 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRP---LELG 201 (398)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCG---GGGT
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCc---hhhC
Confidence 145666663 36889999997 888888875 999999999999999999999643 33322 2345
Q ss_pred CCCcEEEecccccCCcccc-ceeecchHHHh-hcc-------CC--hH-----------HH----------HHHHHHHHH
Q 003466 680 CVPDIACYGKLLTGGVIPL-AATLATNAVFD-SFV-------GD--SK-----------LW----------DLELIQQIS 727 (818)
Q Consensus 680 v~PDivtlgKgLggGy~Pl-sAvl~~~~i~~-~l~-------~~--~~-----------~~----------~~~l~~~l~ 727 (818)
+...+.+++|.++|+..++ |++++++++++ .+. .. .. .+ .+.+.+.++
T Consensus 202 ~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~ 281 (398)
T 1gc0_A 202 ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLA 281 (398)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 5444558999999765787 77888877554 221 11 00 00 012344556
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee---c---------
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP---L--------- 777 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p---~--------- 777 (818)
+++.+..+ ++.|.++.+++... .....+.+.+.|++.+. +
T Consensus 282 ~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~ 351 (398)
T 1gc0_A 282 RQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFMNALQLFSRAVSLGDAESLAQHP 351 (398)
T ss_dssp TCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHHHHCSSSEECSCCSCSSCEEECG
T ss_pred cCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHHHhCCCceeccCCCCcceeeecc
Confidence 66655443 24678888877532 12344556667777653 1
Q ss_pred -------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 -------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 -------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.||+++++..++++|+.+.++|+++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 352 ASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp GGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 278999999999999999999888754
No 144
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.63 E-value=1.2e-15 Score=165.00 Aligned_cols=279 Identities=16% Similarity=0.089 Sum_probs=181.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|+|.+|+.+++.. +. .....+...++.++|+++++.+ ..+.++|+++|++|+..+++.+.
T Consensus 12 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------------- 73 (353)
T 2yrr_A 12 PERVQKALLRPMRG--HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------------- 73 (353)
T ss_dssp CHHHHGGGGSCCCC--TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--------------
T ss_pred CHHHHHHHhccccc--cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--------------
Confidence 79999999888764 11 0012345788999999988742 12579999999999999998761
Q ss_pred CCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
+ .+|++.+.+||+.... .....|.. ...++.+..+
T Consensus 74 --------~-d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 109 (353)
T 2yrr_A 74 --------R-GPVLVLVNGAFSQRVAEMAALHGLD----------------------------PEVLDFPPGE------- 109 (353)
T ss_dssp --------C-CCEEEEECSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTS-------
T ss_pred --------C-CcEEEEcCCCchHHHHHHHHHcCCc----------------------------eEEEeCCCCC-------
Confidence 1 3688888899975111 11111111 0011111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 110 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 110 ----PVD------------------PEAVARALKR-------RRYRMVALVHG-ETSTGVLNP----AEAIGALAKEAGA 155 (353)
T ss_dssp ----CCC------------------HHHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEEcc-CCCcceecC----HHHHHHHHHHcCC
Confidence 011 2566777752 15668888887 888898876 8899999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHHHhhccC--------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVG-------------------- 713 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i~~~l~~-------------------- 713 (818)
++|+||++ ++|+.. .....+ .+|++++ +|.++|+ .++|++++++++++.+..
T Consensus 156 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (353)
T 2yrr_A 156 LFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGY 229 (353)
T ss_dssp EEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCC
T ss_pred eEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCC
Confidence 99999999 677653 222333 3688875 6998876 357999999998865530
Q ss_pred -ChH-------------HHH---------------HHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccCCCchHHHH
Q 003466 714 -DSK-------------LWD---------------LELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 714 -~~~-------------~~~---------------~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
... .+. +.+.+.+++.+ +.-+. ..+.++.+.+... ..+.
T Consensus 230 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~--------~~~~ 300 (353)
T 2yrr_A 230 HHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARG-FRPYPKASPLPTVLVVRPPEG--------VDAD 300 (353)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CEESCSSSBCTTEEEEECCTT--------CCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CccccCccCCCeEEEEECCCC--------CCHH
Confidence 000 010 11233344442 21111 1355556665321 1255
Q ss_pred HHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHH-HHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCS-QLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId-~~~~~l~~~l~~ 807 (818)
.+.+.|.++||++.++ ++.+|+.++...+++|++ +++++|++++++
T Consensus 301 ~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 301 RLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 7889999999999873 378999998888999999 999999988753
No 145
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.63 E-value=3.3e-15 Score=166.55 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=181.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
.|||+.++.... .|++.+|+.+++++..+ ...+...++.++|+++++. +.+++++||++|++.+++
T Consensus 31 ~~id~~~~~~~~------~~~v~~a~~~~~~~~~y-----~~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEEL------RAETDAAIARVLDSGRY-----LLGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHT------HHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCC------CHHHHHHHHHHHhcCCC-----CCchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 799998866542 28999999999876322 1246788999999999874 578899999999999998
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.+ + -+. ..+|++...+||+. ..++...|....
T Consensus 97 ~~-~---~~~----------------gd~vl~~~~~~~~~-~~~~~~~g~~~~--------------------------- 128 (399)
T 2oga_A 97 GL-G---IGP----------------GDEVIVPSHTYIAS-WLAVSATGATPV--------------------------- 128 (399)
T ss_dssp HT-T---CCT----------------TCEEEEESSSCTHH-HHHHHHTTCEEE---------------------------
T ss_pred Hh-C---CCC----------------cCEEEECCCccHHH-HHHHHHCCCEEE---------------------------
Confidence 76 1 111 23789999999883 333433332110
Q ss_pred eeecCcc-hhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003466 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (818)
Q Consensus 560 ~~v~~P~-~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~ 638 (818)
.++... .+ ..| .+.+++.+. .++++|++++. .|.+.+
T Consensus 129 -~~~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~n~----tG~~~~ 166 (399)
T 2oga_A 129 -PVEPHEDHP-----------TLD------------------PLLVEKAIT--------PRTRALLPVHL----YGHPAD 166 (399)
T ss_dssp -EECBCSSSS-----------SBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC
T ss_pred -EEecCCCCC-----------CcC------------------HHHHHHhcC--------CCCeEEEEeCC----cCCccC
Confidence 011000 00 111 255666664 25777876553 455554
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecc-hHHHhhcc
Q 003466 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV 712 (818)
Q Consensus 639 p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~-~~i~~~l~ 712 (818)
+++|.++|++||+++|+||+++ +|.... ...++..+|++++| |.+|+ | +.|+++++ +++++.+.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~ 236 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLR 236 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHH
Confidence 8999999999999999999995 432211 12234447999885 99988 6 68888886 77755331
Q ss_pred ---CC-----------------hH-----------H----------HHHHHHHHHHcCCCeeE--E--EeeeeEEEEEEe
Q 003466 713 ---GD-----------------SK-----------L----------WDLELIQQISSHRTVQR--V--VALGTLCAIELQ 747 (818)
Q Consensus 713 ---~~-----------------~~-----------~----------~~~~l~~~l~~~~~v~~--v--rg~Gl~~~iel~ 747 (818)
.. .. . +.+.+.+.+++.+.+.- . .+.+.++.+.+.
T Consensus 237 ~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 316 (399)
T 2oga_A 237 MLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVR 316 (399)
T ss_dssp HHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEE
T ss_pred HHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEE
Confidence 10 01 0 01112333444432211 0 122332223332
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~ 799 (818)
.. .+..+.+.|.++||++++.. +.+|+.++..+|++|++++++
T Consensus 317 ~~---------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~ 387 (399)
T 2oga_A 317 TE---------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVID 387 (399)
T ss_dssp CS---------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence 11 14568889999999998621 469999999999999999999
Q ss_pred HHHHHHHHH
Q 003466 800 KLYQRLEEF 808 (818)
Q Consensus 800 ~l~~~l~~l 808 (818)
+|+++++++
T Consensus 388 ~l~~~~~~l 396 (399)
T 2oga_A 388 AVREWAERV 396 (399)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHh
Confidence 999887654
No 146
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.63 E-value=2.1e-14 Score=161.46 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=176.6
Q ss_pred CCChhHHHHHHHHHhccCCCC--------CCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEE
Q 003466 440 NVYEPALECAELLLQGVGKGW--------ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~--------l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (818)
+..+...++++.+.+..+... .+.++++++|++|+..+++... ..| ..|++
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~g----------------d~Vlv 137 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----NPG----------------DNVLL 137 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----CCC----------------CEEEE
Confidence 344566777777766554321 1489999999999999999761 222 37999
Q ss_pred EcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhccc
Q 003466 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (818)
Q Consensus 512 ~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~ 591 (818)
.+.+||+.... +...|.. .+.+|... + ..|
T Consensus 138 ~~p~y~~~~~~-~~~~g~~------------------------------~~~v~~~~--------~--~~d--------- 167 (425)
T 2r2n_A 138 DEPAYSGTLQS-LHPLGCN------------------------------IINVASDE--------S--GIV--------- 167 (425)
T ss_dssp ESSCCHHHHHH-HGGGTCE------------------------------EEEECEET--------T--EEC---------
T ss_pred eCCCcHHHHHH-HHHcCCE------------------------------EEEeCcCC--------C--CCC---------
Confidence 99999985432 2222211 01111000 0 011
Q ss_pred CchhHHHHHHHHHHHHHhcCCCC----CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcc
Q 003466 592 DSSDLASIYSSYISQNLLQNPGL----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (818)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~----~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfG 667 (818)
.+.|++.+.+.... ....++++|++.|..++..|.+. +.+.+++|.++|++||+++|.||++++|.
T Consensus 168 ---------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 168 ---------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp ---------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred ---------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 25677777521000 01135678888775578788765 88999999999999999999999999886
Q ss_pred cCCcc----chhcccCCCCcEEEecccccCCccccceeecchHHHhhccCCh--------H--------HHHH-------
Q 003466 668 RLGVE----TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS--------K--------LWDL------- 720 (818)
Q Consensus 668 RtG~~----~a~e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~--------~--------~~~~------- 720 (818)
..|.. ......+....+.++||.++.| +++|++++++++++.+.... . .+..
T Consensus 238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~ 316 (425)
T 2r2n_A 238 FNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFM 316 (425)
T ss_dssp SSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHH
Confidence 66642 2222233344566999999988 79999999999887653210 0 1110
Q ss_pred ---------------HHHHHHHc-CCCeeEE--EeeeeEEEEEEecCcccCCCchHHHHH-HHHHHHhCCceEeec----
Q 003466 721 ---------------ELIQQISS-HRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAAS-LLKKLREDGVYMRPL---- 777 (818)
Q Consensus 721 ---------------~l~~~l~~-~~~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~a~~-~~~~l~e~Gvlv~p~---- 777 (818)
.+.+.+++ .+.+..+ ...|.++.+++.... .+.. +.+.|.++||++.|+
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~--------~~~~~~~~~l~~~gv~v~pg~~f~ 388 (425)
T 2r2n_A 317 AHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN--------DVKELIEEKAVKMGVLMLPGNAFY 388 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS--------CCHHHHHTHHHHTTEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC--------CHHHHHHHHHHHCCcEEechhhhc
Confidence 11223333 3433222 345777777775321 0223 467788999999872
Q ss_pred ------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 778 ------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 ------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+|+.++. .++++|++++++|.+++++
T Consensus 389 ~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 389 VDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp SSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 2689999874 5999999999999998865
No 147
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.63 E-value=2.9e-14 Score=155.71 Aligned_cols=299 Identities=12% Similarity=0.040 Sum_probs=184.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCC-----CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|||+.+ .+.. +|++.+|+.+++.+........ ...+...++.++|+++++.+ .+.++++++|++|+
T Consensus 2 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTS------AKPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTT------CCCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 3788765 3456 9999999999997642211111 11345668889999988743 35799999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+.. .....| ..||+.+..|++.......+ .|..
T Consensus 74 ~~~~~~~~~-~~~~~g----------------d~vi~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4hvk_A 74 NLAIIGYAM-RNARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHH-HHGGGC----------------CEEEEETTCCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHHhhh-hhcCCC----------------CEEEECCCCcHHHHHHHHHHHhcCCE----------------------
Confidence 999997732 222222 36777777777643222111 1111
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
...++....+ ..| .+.+++.+. .++++|++++. ++.
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4hvk_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEECC-CCC
Confidence 0011110000 011 255666664 35789999997 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHH--H
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV--F 708 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i--~ 708 (818)
.|.+.+ +++|.++|++||+ +|+||+++ +|.. .+....++ +|+++ ++|.+| + ..+|+++++++. .
T Consensus 151 tG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~-~g~g~~~~~~~~~~~ 218 (382)
T 4hvk_A 151 IGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-P-KGVGALWIRKEAKLQ 218 (382)
T ss_dssp TCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-C-TTCEEEEEETTCCCC
T ss_pred ceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-C-CceEEEEEcCccCcC
Confidence 998876 8999999999999 99999994 4322 12222333 57775 559543 2 347788877653 1
Q ss_pred hhcc---------CCh---H----------HH--------------HHHHHHHHHcCCCeeEEE----eeeeEEEEEEec
Q 003466 709 DSFV---------GDS---K----------LW--------------DLELIQQISSHRTVQRVV----ALGTLCAIELQA 748 (818)
Q Consensus 709 ~~l~---------~~~---~----------~~--------------~~~l~~~l~~~~~v~~vr----g~Gl~~~iel~~ 748 (818)
..+. ... . .+ .+.+.+.++..+.+.-.. ..+.++.+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECC
Confidence 1110 000 0 00 112333444455432211 112355555532
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. .+..+.+.|.++||+++++ .+.+|+.+...+|++|+++++++|+++
T Consensus 299 ~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 299 I---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp C---------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1 1456788999999999863 478999999999999999999999999
Q ss_pred HHHHHH
Q 003466 805 LEEFDK 810 (818)
Q Consensus 805 l~~l~~ 810 (818)
++++.+
T Consensus 370 ~~~~~~ 375 (382)
T 4hvk_A 370 IERLRS 375 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 148
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.63 E-value=4.1e-15 Score=165.76 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=118.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-h--cccCCCCcEEEecccccCC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A--DLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~--e~~gv~PDivtlgKgLggG 694 (818)
.++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+. . ...+....+.++||.++.|
T Consensus 179 ~~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 255 (417)
T 3g7q_A 179 EETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG 255 (417)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT
T ss_pred cCceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC
Confidence 35677777664 78888766 7778999999999999999999999532 2221111 0 0112222367899976677
Q ss_pred ccccceeecchHHHhhccCChH----------------HH-------------H-------HHHHHHHHc-CCC--eeE-
Q 003466 695 VIPLAATLATNAVFDSFVGDSK----------------LW-------------D-------LELIQQISS-HRT--VQR- 734 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~----------------~~-------------~-------~~l~~~l~~-~~~--v~~- 734 (818)
+++|++++++++++.+..... .+ . +.+.+.+.+ .+. +.-
T Consensus 256 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 334 (417)
T 3g7q_A 256 -SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIH 334 (417)
T ss_dssp -SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEE
T ss_pred -cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceee
Confidence 799999999998876542111 00 0 011223332 332 221
Q ss_pred EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec--------------CCEEEEECCCCChHHHHHHHHHH
Q 003466 735 VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 735 vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------g~~ir~~ppl~~t~edId~~~~~ 800 (818)
....|+++.+++.... ..+..+++.|.++||++.++ .+.+|+.++. ++++|++++++
T Consensus 335 ~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~ 405 (417)
T 3g7q_A 335 KPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKI 405 (417)
T ss_dssp CCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHH
T ss_pred CCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHH
Confidence 2345777777775411 12456888899999999872 2589999985 89999999999
Q ss_pred HHHHHHHHH
Q 003466 801 LYQRLEEFD 809 (818)
Q Consensus 801 l~~~l~~l~ 809 (818)
|.++++++.
T Consensus 406 l~~~l~~~~ 414 (417)
T 3g7q_A 406 LAEEIERAW 414 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 149
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.63 E-value=3.9e-15 Score=167.11 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=184.3
Q ss_pred ceeecccccccccCCCCCC--HHHHHHHHHhhhhccc--ccCCCCCChhHHHHHHHHHhccC---CCCCC--cEEEeCCh
Q 003466 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVG---KGWAS--RAYFSDNG 470 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~h--p~V~eAi~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~---~~~l~--~v~f~~SG 470 (818)
.+||+..|++...-|+. + |.|.+|+.++++.... +....+..+...++++.+....+ . .+ .++++++|
T Consensus 50 ~~i~l~~G~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~--~~~~~i~~t~G~ 126 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKI-PLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA--AGRVVTAQALGG 126 (420)
T ss_dssp SCEECCCCSCCCTTSCC-CCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--TTCEEEEEEEHH
T ss_pred CcEEeeeeeeECCCCCc-cCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc--cCceEEEECCcc
Confidence 78999999887888877 6 8999999999886221 11122334556666666654322 1 24 78999999
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 471 seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
++|++.++++. ... ..| .+|++.+.+|++....... .|...
T Consensus 127 t~al~~~~~~~-~~~--~~g----------------d~Vlv~~p~~~~~~~~~~~-~g~~~------------------- 167 (420)
T 4f4e_A 127 TGALKIGADFL-RTL--NPK----------------AKVAISDPSWENHRALFDM-AGFEV------------------- 167 (420)
T ss_dssp HHHHHHHHHHH-HHH--CTT----------------CCEEEEESCCHHHHHHHHH-TTCCE-------------------
T ss_pred HHHHHHHHHHH-HHh--CCC----------------CEEEEeCCCcHhHHHHHHH-cCCeE-------------------
Confidence 99999998865 222 122 3688999999875433222 22110
Q ss_pred CcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003466 551 PTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (818)
Q Consensus 551 p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV 628 (818)
..++. ++.+ -.| .+.+++.+.+ .+.+..++++...
T Consensus 168 ---------~~v~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~i~~p 204 (420)
T 4f4e_A 168 ---------VAYPYYDAKTN-----------GVN------------------FDGMLAALNG-----YEPGTIVVLHACC 204 (420)
T ss_dssp ---------EEEECEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTCEEEEECSS
T ss_pred ---------EEeeeeccccC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 01111 0000 001 2567777763 3456778888875
Q ss_pred cccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc--cchhcc-cCCCCc---EEEeccccc-CCcccccee
Q 003466 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADL-LGCVPD---IACYGKLLT-GGVIPLAAT 701 (818)
Q Consensus 629 ~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~--~~a~e~-~gv~PD---ivtlgKgLg-gGy~PlsAv 701 (818)
++..|.+. +.+.+++|.++|++||+++|+||++++|+..|. ...... .+..++ +.++||.+| .| +++|++
T Consensus 205 -~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~ 281 (420)
T 4f4e_A 205 -HNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGAL 281 (420)
T ss_dssp -CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEE
T ss_pred -CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEE
Confidence 88888766 788899999999999999999999999976542 222221 122333 337999999 57 799987
Q ss_pred ec---chHHHhh----cc--------C-ChH------------H----HHH--------------HHHHHHHcC---CCe
Q 003466 702 LA---TNAVFDS----FV--------G-DSK------------L----WDL--------------ELIQQISSH---RTV 732 (818)
Q Consensus 702 l~---~~~i~~~----l~--------~-~~~------------~----~~~--------------~l~~~l~~~---~~v 732 (818)
++ ++++++. +. . ... . +.+ .+.+.|+++ +.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 361 (420)
T 4f4e_A 282 SIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDF 361 (420)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 53 4554332 11 0 000 0 111 122333443 122
Q ss_pred eEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 733 QRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 733 ~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.-. ...|++.-+.+. ...+.+.|.++||++.+.+ |+.+. .+++++|++++++|.+++
T Consensus 362 ~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~~~---Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 362 SFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVSTG---RICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp THHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCTTS---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred eeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecCCC---eEEEe-cCCHHHHHHHHHHHHHHh
Confidence 111 223443332221 2245666778999999865 66664 457888999999998875
No 150
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.63 E-value=2.6e-15 Score=168.57 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=143.9
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ +.| ..||+.+..|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~------~~g----------------d~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL------DAG----------------SHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CTT----------------CEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc------CCC----------------CEEEEeCCCchH
Confidence 35678899999999999873 58999999999999865433 122 378888888887
Q ss_pred Cccccccc----cCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCch
Q 003466 519 DTLGAMEA----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (818)
Q Consensus 519 ~t~~als~----tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~ 594 (818)
.......+ .|.. .+.+| ++|
T Consensus 118 ~~~~~~~~~~~~~g~~------------------------------~~~v~--------------~~d------------ 141 (400)
T 3nmy_A 118 TFRLFERVRRRTAGLD------------------------------FSFVD--------------LTD------------ 141 (400)
T ss_dssp HHHHHHHTHHHHHCCE------------------------------EEEEC--------------TTS------------
T ss_pred HHHHHHHhhHhhcCeE------------------------------EEEEC--------------CCC------------
Confidence 44222111 0100 00001 222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch
Q 003466 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (818)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a 674 (818)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. |.++.
T Consensus 142 ------~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~----~~~~~ 198 (400)
T 3nmy_A 142 ------PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS----PMLQR 198 (400)
T ss_dssp ------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH----HHHCC
T ss_pred ------HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc----cccCC
Confidence 255666664 36899999997 899998885 99999999999999999999952 22222
Q ss_pred hcccCCCCcEEEecccccCCccccce--ee-cchHHHhhccCChH-----------------------HHH------HHH
Q 003466 675 ADLLGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSFVGDSK-----------------------LWD------LEL 722 (818)
Q Consensus 675 ~e~~gv~PDivtlgKgLggGy~PlsA--vl-~~~~i~~~l~~~~~-----------------------~~~------~~l 722 (818)
...+|+.+.+.+++|.++|+..++++ ++ .++++++.+..... .++ ..+
T Consensus 199 ~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l 278 (400)
T 3nmy_A 199 PLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMRAHCENALAL 278 (400)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 22345444455699999986566655 44 36677665432111 000 123
Q ss_pred HHHHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 723 IQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 723 ~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.+.++++|.+..| +|.|.|++|++..+. +.+..|.+.|.
T Consensus 279 ~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-------~~~~~~~~~l~ 335 (400)
T 3nmy_A 279 AQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-------DAAKRFCEKTE 335 (400)
T ss_dssp HHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-------HHHHHHHHHCS
T ss_pred HHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-------HHHHHHHHcCC
Confidence 4456778888888 889999999996431 33555666554
No 151
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.63 E-value=3.2e-15 Score=165.07 Aligned_cols=283 Identities=12% Similarity=0.046 Sum_probs=179.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|++.+|+.+++... .. ....+...++.++|+++++.+ .+ .++++++|++|++.+++.+. +.|
T Consensus 31 ~~~v~~a~~~~~~~~--~~--~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~-----~~g------ 94 (393)
T 2huf_A 31 PQRVLDAMSRPILGH--LH--PETLKIMDDIKEGVRYLFQTN-NIATFCLSASGHGGMEATLCNLL-----EDG------ 94 (393)
T ss_dssp CHHHHHHTTSCCCCT--TS--HHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred CHHHHHHHHhhhccC--CC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHh-----CCC------
Confidence 899999998877541 10 112356788999999988753 23 68999999999999999761 122
Q ss_pred CCCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+|++.+.+||+.....+ ...|.. ...++.+..+
T Consensus 95 ----------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 129 (393)
T 2huf_A 95 ----------DVILIGHTGHWGDRSADMATRYGAD----------------------------VRVVKSKVGQ------- 129 (393)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC-------
T ss_pred ----------CEEEEECCCcchHHHHHHHHHcCCe----------------------------eEEEeCCCCC-------
Confidence 379999999998421111 101111 0011111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 130 ----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~ 175 (393)
T 2huf_A 130 ----SLS------------------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHNC 175 (393)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcCC
Confidence 111 2556666652 14568888886 888898876 8999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC-------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD------------------- 714 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~------------------- 714 (818)
++|+||++ ++|... .....+ .+|+++++ |.++|+ .++|++++++++++.+...
T Consensus 176 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
T 2huf_A 176 LLIVDTVA-SLGGAP--MFMDRW--EIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWG 249 (393)
T ss_dssp EEEEECTT-TBTTBC--CCTTTT--TCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred EEEEEccc-ccCCCC--cchhhc--CccEEEECCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhc
Confidence 99999998 455432 112222 47888654 998875 3568899998887653210
Q ss_pred ----------hH-------------HH---------------HHHHHHHHHcCCC--eeEEE-eeeeEEEEEEecCcccC
Q 003466 715 ----------SK-------------LW---------------DLELIQQISSHRT--VQRVV-ALGTLCAIELQAAGCNA 753 (818)
Q Consensus 715 ----------~~-------------~~---------------~~~l~~~l~~~~~--v~~vr-g~Gl~~~iel~~~~~~~ 753 (818)
.. .+ .+.+.+.+++.+. +.... ..+.++.+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~---- 325 (393)
T 2huf_A 250 CFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQG---- 325 (393)
T ss_dssp CSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTT----
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCC----
Confidence 00 00 0112333444321 11100 1244666666321
Q ss_pred CCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 754 GYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 754 ~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||++++. ++.+|+.+ +...+++++++++++|+++++++.
T Consensus 326 ----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 326 ----VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp ----CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 1245688888865 9999873 47899999 667789999999999999988764
No 152
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.63 E-value=1.6e-14 Score=156.88 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=178.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++.. .. - .|++.+|+.+....... .+..+...+|.++|+++++. +.+++++||++|+..+++
T Consensus 4 ~~i~~~~~~~---~~-p-~~~~~~a~~~~~~~~~~----y~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTV---TK-P-TEEMRKAMAQAEVGDDV----YGEDPTINELERLAAETFGK---EAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGG---CC-C-CHHHHHHHHTCCCCCGG----GTCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccC---CC-C-CHHHHHHHhcCCCCCcc----cCCChHHHHHHHHHHHHhCC---ceEEEecCcHHHHHHHHH
Confidence 6789887433 33 5 78999999765421111 12355677999999999873 688999999999999987
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccc---ccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
.. .+.| .+|++.+. +|+.++.. ....|...
T Consensus 72 ~~-----~~~g----------------d~Vl~~~~-~~~~~~~~~~~~~~~g~~~------------------------- 104 (347)
T 1jg8_A 72 AH-----TQRG----------------DEVILEAD-SHIFWYEVGAMAVLSGVMP------------------------- 104 (347)
T ss_dssp HH-----CCTT----------------CEEEEETT-CHHHHSSTTHHHHHTCCEE-------------------------
T ss_pred Hh-----cCCC----------------CEEEEcCc-chhhhccccchhhccCeEE-------------------------
Confidence 65 1222 25666555 45443321 11111110
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-Cc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g-G~ 635 (818)
..+ .+..+ ..| .+.+++.+.... ....++++|++++. ++.. |.
T Consensus 105 ---~~v-~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~~v~~~~~-~npt~G~ 148 (347)
T 1jg8_A 105 ---HPV-PGKNG-----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGR 148 (347)
T ss_dssp ---EEE-CEETT-----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSB
T ss_pred ---EEe-cCCCC-----------ccC------------------HHHHHHHhcccc--ccccCceEEEEecc-ccccCCc
Confidence 001 00000 011 256666664200 01136889999987 7776 65
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCccc---CCccchhcccCCCCc--EEEecccccCCccccce-eecchHHHh
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFD 709 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGR---tG~~~a~e~~gv~PD--ivtlgKgLggGy~PlsA-vl~~~~i~~ 709 (818)
+. |.+.+++|.++|++||+++|+||++. +|- .|.. ...+....| +++++|++++ |+|+ +++++++++
T Consensus 149 ~~-~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 149 VV-PLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred cC-cHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 44 88899999999999999999999873 321 1211 111111234 3469999975 4674 556776665
Q ss_pred hcc------C-C---h-H--------------H------HHHHHHHHHHcCCC-eeEEEeeeeEEEEEEecCcccCCCch
Q 003466 710 SFV------G-D---S-K--------------L------WDLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 710 ~l~------~-~---~-~--------------~------~~~~l~~~l~~~~~-v~~vrg~Gl~~~iel~~~~~~~~~~~ 757 (818)
.+. . . . . . ..+.+.+.|++++. +......|.++.+.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 294 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK------- 294 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS-------
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEccccc-------
Confidence 331 1 0 0 0 0 01123334443322 1001123555556653210
Q ss_pred HHHHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+..+++.|.++||.+++.+ +.+|+.++..+|++|+++++++|.+++++
T Consensus 295 ~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 295 VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 125578889999999999864 78999998899999999999999988764
No 153
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.2e-15 Score=169.89 Aligned_cols=235 Identities=15% Similarity=0.061 Sum_probs=153.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|++.|++.+ -+.| ..||+.+.+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g~---~~~~~~~sG~~Ai~~al~~l-----~~~G----------------d~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEGA---PAAFATASGMAAVFTSLGAL-----LGAG----------------DRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTT-----CCTT----------------CEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-----hCCC----------------CEEEEcCCccch
Confidence 45678899999999999873 68999999999999999865 1222 378999999998
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.... +... ....| ...+.+| .+|
T Consensus 133 ~~~~-~~~~-------------~~~~g-------------~~~~~v~--------------~~d---------------- 155 (414)
T 3ndn_A 133 CFVV-CSEI-------------LPRWG-------------VQTVFVD--------------GDD---------------- 155 (414)
T ss_dssp HHHH-HHTH-------------HHHTT-------------CEEEEEC--------------TTC----------------
T ss_pred HHHH-HHHH-------------HHHcC-------------cEEEEeC--------------CCC----------------
Confidence 3211 1100 00000 0001111 122
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++++|++|+. ++..|.+.+ +++|+++|++||+++|+||+++ +|.++....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~----~~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA----TPLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT----HHHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc----ccccCCchhc
Confidence 255666664 25679999997 899998875 9999999999999999999995 3333333356
Q ss_pred CCCCcEEEecccccC-CccccceeecchHHHh-hccCCh--------H-----------HH----------HHHHHHHHH
Q 003466 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD-SFVGDS--------K-----------LW----------DLELIQQIS 727 (818)
Q Consensus 679 gv~PDivtlgKgLgg-Gy~PlsAvl~~~~i~~-~l~~~~--------~-----------~~----------~~~l~~~l~ 727 (818)
|+...+.+++|.+++ |.+++|+++++++.+. .+.... . .+ .+.+.+.|+
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~ 296 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLN 296 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555568999987 6578899999887665 332100 0 00 012344567
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p 776 (818)
++|.+..| +|.|.+++|++..... ...+.+..|.+.|...++.+..
T Consensus 297 ~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~~~~~l~~~~~~~s~ 360 (414)
T 3ndn_A 297 GHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFEVLDKMRLIDISNNL 360 (414)
T ss_dssp TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHHHHHHCSSSEECSCC
T ss_pred cCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHHHHHhCccceEcCCC
Confidence 77777655 5679999999964200 0014566778777766655543
No 154
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.62 E-value=4.1e-15 Score=164.68 Aligned_cols=301 Identities=12% Similarity=0.064 Sum_probs=179.8
Q ss_pred ceeecccccccccCCCCCC--HHHHHHHHH-hhhhccccc--CCCCCChhHHHHHHHHHhccC---CCCCC--cEEEeCC
Q 003466 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVM--FPENVYEPALECAELLLQGVG---KGWAS--RAYFSDN 469 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~h--p~V~eAi~~-q~~~~~~~~--~~~~~~~~~~eLae~L~~~~~---~~~l~--~v~f~~S 469 (818)
.+||+..|++.++.|+. + |+|.+|+.+ +++...... ...+..+...++++.+....+ . .+ .++++++
T Consensus 27 ~~i~l~~g~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~--~~~~~i~~t~g 103 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGII-PQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK--QQRVATIQTLG 103 (397)
T ss_dssp CCEECSSCCCCCTTSCC-CCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--TTCEEEEEESH
T ss_pred CeEEEeeeEEECCCCCc-cCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc--ccceEEEEcCC
Confidence 68999998877777776 5 899999999 887532211 112334555666666654322 1 25 7899999
Q ss_pred hhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccC
Q 003466 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (818)
Q Consensus 470 GseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~ 549 (818)
|++|++.++++. .... .| .+|++...+|++...... ..|...
T Consensus 104 ~~~a~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~-~~g~~~------------------ 145 (397)
T 3fsl_A 104 GSGALKVGADFL-KRYF--PE----------------SGVWVSDPTWENHVAIFA-GAGFEV------------------ 145 (397)
T ss_dssp HHHHHHHHHHHH-HHHC--TT----------------CCEEEESSCCHHHHHHHH-HTTCCE------------------
T ss_pred cHHHHHHHHHHH-HhcC--CC----------------CeEEEeCCCchhHHHHHH-HcCCce------------------
Confidence 999999998865 3221 12 368899999987543222 222110
Q ss_pred CCcccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 003466 550 PPTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (818)
Q Consensus 550 ~p~~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP 627 (818)
..++. ++.+ --| .+.+++.+.+ ...+..++++..
T Consensus 146 ----------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~v~~~~ 181 (397)
T 3fsl_A 146 ----------STYPWYDEATN-----------GVR------------------FNDLLATLKT-----LQAGSIVLLHPC 181 (397)
T ss_dssp ----------EEECCEETTTT-----------EEC------------------HHHHHHHHTT-----CCTTCEEEECSS
T ss_pred ----------EEEeeeeccCC-----------cCc------------------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 01111 0000 001 2567777763 234566777766
Q ss_pred ccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC--ccchhcc----cCCCCcEEEeccccc-CCccccce
Q 003466 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (818)
Q Consensus 628 V~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG--~~~a~e~----~gv~PDivtlgKgLg-gGy~PlsA 700 (818)
. ++..|.+. +.+.+++|.++|++||+++|+||++++|...+ ....... .+....+.++||.+| .| +++|+
T Consensus 182 p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~ 258 (397)
T 3fsl_A 182 C-HNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGG 258 (397)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEE
T ss_pred C-CCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeE
Confidence 4 78888766 78889999999999999999999999886543 2222211 222223447999998 68 79999
Q ss_pred eec---chHHHhhcc------------CCh-H-------H---------HHH--------------HHHHHHHcCC---C
Q 003466 701 TLA---TNAVFDSFV------------GDS-K-------L---------WDL--------------ELIQQISSHR---T 731 (818)
Q Consensus 701 vl~---~~~i~~~l~------------~~~-~-------~---------~~~--------------~l~~~l~~~~---~ 731 (818)
+++ ++++++.+. ... . . +.+ .+.+.+++++ .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 338 (397)
T 3fsl_A 259 LSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERN 338 (397)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 864 444443211 000 0 0 011 1222333332 1
Q ss_pred eeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 732 VQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 732 v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
+.-.. ..|.+.-+.+. ...+.+.|.++||++.+++ |+... .+++++|++++++|+++
T Consensus 339 ~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~g~---Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 339 FDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIASG---RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp CTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCTTC---EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred ceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECCCC---eEEEE-ecCHhhHHHHHHHHHhh
Confidence 21111 22333332221 2235667778999999876 66664 45778899999999875
No 155
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.62 E-value=4.7e-15 Score=165.29 Aligned_cols=287 Identities=13% Similarity=0.054 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHhhh-hcccccC------CCCCChhHHHHH-HHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAA-RFGHVMF------PENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~-~~~~~~~------~~~~~~~~~eLa-e~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~ 485 (818)
+. ||+|++|+.+++. .+++... .....+...+++ +++++.++. +.+ ++++||++|++.|++.+
T Consensus 43 ~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~---- 114 (425)
T 3ecd_A 43 IV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLAL---- 114 (425)
T ss_dssp CC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHH----
T ss_pred CC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHc----
Confidence 45 8999999999984 4432210 011123556776 677777763 455 45999999999999976
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCc-ccccc-ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t-~~als-~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
-..| ..|++.+.+||+.. .++.. ..+.. + ..++
T Consensus 115 -~~~g----------------d~Vi~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 149 (425)
T 3ecd_A 115 -AKPG----------------DTVLGMSLDAGGHLTHGAKPALSGKW-F---------------------------NALQ 149 (425)
T ss_dssp -CCTT----------------CEEEEECC-------------------C---------------------------EEEE
T ss_pred -cCCC----------------CEEEEcccccccceecchhhhhcccc-e---------------------------eeee
Confidence 1222 37899999888722 22211 11110 0 0001
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCcccCCHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLF 642 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvE-PV~~g~gG~~~~p~~f 642 (818)
+|..- +....| .+.+++.+.+ .++++|+++ |. + | ....
T Consensus 150 ~~~~~--------~~~~~d------------------~~~l~~~i~~-------~~~~~v~~~~~~-~---~----~~~~ 188 (425)
T 3ecd_A 150 YGVSR--------DTMLID------------------YDQVEALAQQ-------HKPSLIIAGFSA-Y---P----RKLD 188 (425)
T ss_dssp ECCCT--------TTSSCC------------------HHHHHHHHHH-------HCCSEEEEECSC-C---C----SCCC
T ss_pred cCCCc--------ccCccC------------------HHHHHHHHhh-------cCCcEEEEcccc-C---C----CcCC
Confidence 11000 000111 2566777752 235688888 54 3 2 2344
Q ss_pred HHHHHHHHHhcCCcEEEeecc-cCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecc-hHHHhhccC---C-
Q 003466 643 QRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSFVG---D- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~-~~i~~~l~~---~- 714 (818)
+++|+++|++||+++|+||+| +|+...|.++.... .+|+++ ++|+++|+ .+|+++++ +++.+.+.. .
T Consensus 189 l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g~--~~g~~~~~~~~~~~~~~~~~~~~ 263 (425)
T 3ecd_A 189 FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRGP--RGGFVLTNDEEIAKKINSAVFPG 263 (425)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCCC--CcEEEEeCCHHHHHHHHhhhCcc
Confidence 799999999999999999996 46656665433221 168874 56999653 47778887 455554321 0
Q ss_pred ---h---H--------H-----------------HHHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHH
Q 003466 715 ---S---K--------L-----------------WDLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 715 ---~---~--------~-----------------~~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
. . . ..+.+.+.+.+.+. .-+. +.+.++.+.+.... ..+.
T Consensus 264 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~~~~~-------~~~~ 335 (425)
T 3ecd_A 264 LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGV-DLVTGGTDNHLLLVDLRPKG-------LKGA 335 (425)
T ss_dssp ---CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEECGGGT-------CCHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC-eeccCCCCceEEEEEeCCCC-------CCHH
Confidence 0 0 0 00122334444332 1111 34566666664321 1245
Q ss_pred HHHHHHHhCCceEe----ec-------CCEEEEECCCCCh----HHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMR----PL-------GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~----p~-------g~~ir~~ppl~~t----~edId~~~~~l~~~l~~l 808 (818)
.+.+.|.++||++. |. .+.+|+.++...+ +++|++++++|.+++++.
T Consensus 336 ~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 336 QVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 67778889999998 32 1589999766554 999999999999999876
No 156
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.61 E-value=6.3e-14 Score=153.70 Aligned_cols=299 Identities=12% Similarity=0.040 Sum_probs=186.7
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
-|||+.++ |+. +|+|++|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 2 ~yld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CCC-CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 48887763 577 99999999999876321110001 1246788999999988743 25899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc--cCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~--tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
+.+++.+.+++ ...| ..|++.+.+||+.......+ .|..
T Consensus 74 ~~~~~~l~~~~-~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4eb5_A 74 NLAIIGYAMRN-ARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHHHH-GGGC----------------CEEEEETTCCHHHHHHHHHHTTTTCE----------------------
T ss_pred HHHHHHHHhhc-cCCC----------------CEEEECCCcchHHHHHHHHHHhCCcE----------------------
Confidence 99999873222 1222 36888888887643222211 1110
Q ss_pred ccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003466 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (818)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~ 632 (818)
...++....+ ..| .+.+++.+. .++.+|+++.. ++.
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4eb5_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------ccC------------------HHHHHHHhc--------CCCeEEEEecc-CCC
Confidence 0011110000 011 255666664 25778999987 888
Q ss_pred CCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCccccceeecchHH-Hh
Q 003466 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAV-FD 709 (818)
Q Consensus 633 gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~~~i-~~ 709 (818)
.|.+.+ +++|.++|++||++ |+||+++ +|... .....+ .+|+++. +|.+|- ..+|+++++++. +.
T Consensus 151 tG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~--~g~G~~~~~~~~~l~ 218 (382)
T 4eb5_A 151 IGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP--KGVGALWIRKEAKLQ 218 (382)
T ss_dssp TCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC--SSCEEEEEETTCCCC
T ss_pred ccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC--CceEEEEEccccccC
Confidence 898876 89999999999999 9999995 65432 112222 4688754 696431 126778887763 22
Q ss_pred -hccC---------ChH-------------HHH--------------HHHHHHHHcCCCeeEEEe----eeeEEEEEEec
Q 003466 710 -SFVG---------DSK-------------LWD--------------LELIQQISSHRTVQRVVA----LGTLCAIELQA 748 (818)
Q Consensus 710 -~l~~---------~~~-------------~~~--------------~~l~~~l~~~~~v~~vrg----~Gl~~~iel~~ 748 (818)
.+.. ... .+. +.+.+.+++++.+.-+.. .+.++.+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4eb5_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT
T ss_pred ceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC
Confidence 1110 000 111 112334444544322111 24466666642
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. .+..+.+.|.++||++.+. .+.+|+.+...+|++|+++++++|.++
T Consensus 299 ~---------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 299 I---------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp S---------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred c---------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 1456888899999999863 368999999889999999999999999
Q ss_pred HHHHHH
Q 003466 805 LEEFDK 810 (818)
Q Consensus 805 l~~l~~ 810 (818)
++++..
T Consensus 370 ~~~~~~ 375 (382)
T 4eb5_A 370 IERLRS 375 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 157
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.61 E-value=3e-15 Score=168.79 Aligned_cols=161 Identities=12% Similarity=-0.031 Sum_probs=117.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+++++|+++.+. +.+++++||++|++.|++.+. +. ...||+.+.+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~-----~~----------------gd~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLA-----QA----------------GDNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCchHH
Confidence 4567889999999999974 467888999999999999761 11 24799999999985
Q ss_pred cccccc---ccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhccccccccccCccchhhcccCchh
Q 003466 520 TLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (818)
Q Consensus 520 t~~als---~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~ 595 (818)
...... ..|.. .+.+ | .+|
T Consensus 111 ~~~~~~~~~~~g~~------------------------------~~~~~~--------------~~d------------- 133 (421)
T 2ctz_A 111 FNQFKVTLKRLGIE------------------------------VRFTSR--------------EER------------- 133 (421)
T ss_dssp HHHHHTHHHHTTCE------------------------------EEECCT--------------TCC-------------
T ss_pred HHHHHHHHHHcCCE------------------------------EEEECC--------------CCC-------------
Confidence 533311 11110 0011 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh
Q 003466 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~ 675 (818)
.+.+++.|. .++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++|..+..+
T Consensus 134 -----~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~-- 193 (421)
T 2ctz_A 134 -----PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL-- 193 (421)
T ss_dssp -----HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG--
T ss_pred -----HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc--
Confidence 155666664 36899999997 898998876 9999999999999999999998888766544
Q ss_pred cccCCCCcEE--EecccccCCccccceeecc
Q 003466 676 DLLGCVPDIA--CYGKLLTGGVIPLAATLAT 704 (818)
Q Consensus 676 e~~gv~PDiv--tlgKgLggGy~PlsAvl~~ 704 (818)
+..+|++ +++|.++|...++|+++++
T Consensus 194 ---~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 ---AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp ---GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ---ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 2358988 7999999743688877774
No 158
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.61 E-value=4.3e-15 Score=163.13 Aligned_cols=270 Identities=13% Similarity=0.121 Sum_probs=163.9
Q ss_pred HHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCc
Q 003466 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (818)
Q Consensus 421 V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~ 500 (818)
+.+++.+.+.... .+..+...+|.++|+++++. +.++|++||++|++.+++.+ + -..
T Consensus 21 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~---~~~----------- 77 (374)
T 3uwc_A 21 YLNDLREFIKTAD-----FTLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-N---IGA----------- 77 (374)
T ss_dssp HHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT-----------
T ss_pred HHHHHHHHHHcCC-----cccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCC-----------
Confidence 5555555554432 12467789999999999974 58999999999999999876 1 011
Q ss_pred cccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccc
Q 003466 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (818)
Q Consensus 501 ~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~ 580 (818)
..+|++...+||+... ++...|... ..++..+.+ -
T Consensus 78 -----gd~v~~~~~~~~~~~~-~~~~~g~~~----------------------------~~~~~~~~~-----------~ 112 (374)
T 3uwc_A 78 -----GDEVITCANTFIASVG-AIVQAGATP----------------------------VLVDSENGY-----------V 112 (374)
T ss_dssp -----TCEEEEESSSCHHHHH-HHHHTTCEE----------------------------EEECBCTTS-----------S
T ss_pred -----CCEEEECCCccHHHHH-HHHHcCCEE----------------------------EEEecCCCC-----------C
Confidence 2478888888887543 222222110 001110000 0
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEe
Q 003466 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (818)
Q Consensus 581 nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~D 660 (818)
-|+ +.+++.+. .++++|+ |. ...|...+ +++|.++|++||+++|+|
T Consensus 113 ~d~------------------~~l~~~~~--------~~~~~v~--~~--n~~G~~~~----~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 113 IDP------------------EKIEAAIT--------DKTKAIM--PV--HYTGNIAD----MPALAKIAKKHNLHIVED 158 (374)
T ss_dssp BCG------------------GGTGGGCC--------TTEEEEC--CB--CGGGCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred cCH------------------HHHHHhCC--------CCceEEE--Ee--CCcCCcCC----HHHHHHHHHHcCCEEEEe
Confidence 011 23333332 2566666 53 44566554 999999999999999999
Q ss_pred ecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecch-HHHhhcc---CC-----------------
Q 003466 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLATN-AVFDSFV---GD----------------- 714 (818)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~~-~i~~~l~---~~----------------- 714 (818)
|+++.+ ..+..+.++..+|++++| |.+++ |. .|++++++ ++++.+. ..
T Consensus 159 ~~~~~g----~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (374)
T 3uwc_A 159 ACQTIL----GRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRM 232 (374)
T ss_dssp CTTCTT----CEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBC
T ss_pred CCCccC----ceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCC
Confidence 999632 224445566668999988 99988 73 67777654 4533221 10
Q ss_pred hH---------------------HHHHHHHHHHHcCCC-eeEE---E-eeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 715 SK---------------------LWDLELIQQISSHRT-VQRV---V-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 715 ~~---------------------~~~~~l~~~l~~~~~-v~~v---r-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.. .+.+.+.+.+...+. +.-. . +...+..+.+... ....+.+.|.
T Consensus 233 ~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~ 303 (374)
T 3uwc_A 233 DTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK---------YRDQLFQYLK 303 (374)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET---------THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC---------CHHHHHHHHH
Confidence 00 000122333444432 2111 0 1111111111111 2456888999
Q ss_pred hCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 769 EDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 769 e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
++||.+++.. +.+|+.+...+|++||++++++|.+++++
T Consensus 304 ~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 304 DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999988643 68999999999999999999999998864
No 159
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.61 E-value=1e-13 Score=159.40 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=121.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCcc
Q 003466 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVI 696 (818)
Q Consensus 620 iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~ 696 (818)
+.+|++... ++..|.+.+ +++|.++|++||+++++||+++|+...+. +.....|+ .+|++++ +|.++++ +
T Consensus 259 ~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~ 331 (497)
T 2qma_A 259 PFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT-I 331 (497)
T ss_dssp EEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-S
T ss_pred ceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-c
Confidence 456666654 566787665 99999999999999999999998876666 44445577 7899877 9999988 5
Q ss_pred ccceeecchH-HHhhccC-------C-------------------hH----------------------HHHHHHHHHHH
Q 003466 697 PLAATLATNA-VFDSFVG-------D-------------------SK----------------------LWDLELIQQIS 727 (818)
Q Consensus 697 PlsAvl~~~~-i~~~l~~-------~-------------------~~----------------------~~~~~l~~~l~ 727 (818)
++|+++++++ .++.+.. . .. .+.+.+.+.++
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 411 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIR 411 (497)
T ss_dssp SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999888644 2333211 0 00 01112344555
Q ss_pred cCCCeeEE-EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee----cC-CEEEEEC-CCCChHHHHHHHHHH
Q 003466 728 SHRTVQRV-VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----LG-NVIYLMC-GPCSSPEVCSQLLLK 800 (818)
Q Consensus 728 ~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~g-~~ir~~p-pl~~t~edId~~~~~ 800 (818)
+.+.+.-+ ...+.++.+.+.... . ........+.+.|.++|+++.+ .+ ..+|+++ +..+|++||++++++
T Consensus 412 ~~~~~~~~~~~~~~~v~f~~~~~~--~-~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~ 488 (497)
T 2qma_A 412 TNDQFELLAEPSLSTVLFRATHET--A-DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSK 488 (497)
T ss_dssp TCTTEEECSCCSSSEEEEEECCSS--S-CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred hCCCeEEEcCCCceEEEEEEcCCc--c-CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHH
Confidence 55543221 223457777775431 0 1112355678889999998864 23 5799987 788999999999999
Q ss_pred HHHHHHHH
Q 003466 801 LYQRLEEF 808 (818)
Q Consensus 801 l~~~l~~l 808 (818)
|+++++++
T Consensus 489 l~~~~~~~ 496 (497)
T 2qma_A 489 INMLAVEL 496 (497)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99887654
No 160
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.60 E-value=5.9e-15 Score=165.81 Aligned_cols=189 Identities=11% Similarity=0.050 Sum_probs=130.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH-HhcCCcEEEeecccC--cccCCc----cch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTG--FWRLGV----ETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc-~~~gilLI~DEV~TG--fGRtG~----~~a 674 (818)
+.+++.+. ..++.+|++.|..++..|.+. |.+.+++|.++| ++||+++|+||++++ |+..+. .+.
T Consensus 170 ~~l~~~l~-------~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 241 (427)
T 3ppl_A 170 DAVEELVK-------NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVG 241 (427)
T ss_dssp HHHHHHTT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhh
Confidence 55666663 246789999987678888877 677799999999 999999999999987 444442 122
Q ss_pred h----cccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------H------HH---------
Q 003466 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------L------WD--------- 719 (818)
Q Consensus 675 ~----e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~------~~--------- 719 (818)
. ...+...++.++||.++.| +.+|.+++++++++.+..... . +.
T Consensus 242 ~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 320 (427)
T 3ppl_A 242 LGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAAS 320 (427)
T ss_dssp HHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred hhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 1 1345556677999997778 799999999988776532110 0 00
Q ss_pred -----HHHHHHHHc----CCCeeE-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----------cC
Q 003466 720 -----LELIQQISS----HRTVQR-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP-----------LG 778 (818)
Q Consensus 720 -----~~l~~~l~~----~~~v~~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p-----------~g 778 (818)
+.+.+.+.+ .+.+.- ....|+++.+++... .+..+.+.|.++||++.| ..
T Consensus 321 ~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~ 391 (427)
T 3ppl_A 321 LAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTGAGSSYPLRQDPEN 391 (427)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEecCcCcCCCCCCCCC
Confidence 011222221 112211 112467777776432 145678889999999987 23
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+|+.++.. ++++|++++++|.++++++.
T Consensus 392 ~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 392 KNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp CEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 7899998655 89999999999999998764
No 161
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.60 E-value=1.1e-14 Score=164.21 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=120.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchh---cccCCCCcEEEecccccCC
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DLLGCVPDIACYGKLLTGG 694 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~---e~~gv~PDivtlgKgLggG 694 (818)
.++.+|++... ++..|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+.. ...+...++.+++|.+..|
T Consensus 205 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 281 (444)
T 3if2_A 205 GRIGAICCSRP-TNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG 281 (444)
T ss_dssp TCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG
T ss_pred CCceEEEeCCC-CCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC
Confidence 35667777643 67788766 7888999999999999999999999532 22211110 1234445577999987778
Q ss_pred ccccceeecchHHHhhccCChH---------------------HH----HH-----------HHHHHHHc-CCCe-eEE-
Q 003466 695 VIPLAATLATNAVFDSFVGDSK---------------------LW----DL-----------ELIQQISS-HRTV-QRV- 735 (818)
Q Consensus 695 y~PlsAvl~~~~i~~~l~~~~~---------------------~~----~~-----------~l~~~l~~-~~~v-~~v- 735 (818)
+++|++++++++++.+..... .+ .+ .+.+.+.+ .+.+ ..+
T Consensus 282 -~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 360 (444)
T 3if2_A 282 -MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIH 360 (444)
T ss_dssp -GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEE
T ss_pred -CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEe
Confidence 799999999998876543211 00 00 11222322 3432 122
Q ss_pred -EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----C----------CEEEEECCCCChHHHHHHHHH
Q 003466 736 -VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----G----------NVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 736 -rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g----------~~ir~~ppl~~t~edId~~~~ 799 (818)
...|+++.+.+.... ..+..+++.|.++||++.++ + +.+|+.++. ++++|+++++
T Consensus 361 ~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~ 431 (444)
T 3if2_A 361 KPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIK 431 (444)
T ss_dssp CCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHH
T ss_pred cCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHH
Confidence 245777777775421 12556888899999999873 1 479999987 8999999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|.++++++.
T Consensus 432 ~l~~~~~~~~ 441 (444)
T 3if2_A 432 VIGEVVRELY 441 (444)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 162
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.59 E-value=1.1e-13 Score=153.71 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=183.8
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||..++ +.. +|+|.+|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------MLI-PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CCC-CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 67887652 256 89999999999986431110011 1355778999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc---cCCCCCCCcCCCCcccCCCcccCCC
Q 003466 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (818)
Q Consensus 475 e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~---tg~~~~~~~~~~p~~~~~~~~~~~p 551 (818)
+.+++...+.. .. ...||+...+||+.......+ .|...
T Consensus 100 ~~~~~~l~~~~--~~----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~v-------------------- 141 (406)
T 3cai_A 100 SLLAEASSSRA--GL----------------GYEVIVSRLDDEANIAPWLRAAHRYGAKV-------------------- 141 (406)
T ss_dssp HHHHHHTGGGG--BT----------------TCEEEEETTSCGGGTHHHHHHHHHHBCEE--------------------
T ss_pred HHHHHHHhhcc--CC----------------CCEEEEcCCccHHHHHHHHHHHHhcCCeE--------------------
Confidence 99888541111 11 237888888888743222221 12110
Q ss_pred cccccCcceeecCc-chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 552 ~~~~~~~~~~v~~P-~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++.. +.. ..|+ +.|++.+. .++++|+++++ +
T Consensus 142 --------~~v~~~~~~~-----------~~d~------------------~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 142 --------KWAEVDIETG-----------ELPT------------------WQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp --------EEECCCTTTC-----------CCCG------------------GGHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEecCcccC-----------CcCH------------------HHHHHHhC--------CCceEEEEeCC-c
Confidence 011110 000 0111 34555553 36789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccc-eeecchHH
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLA-ATLATNAV 707 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~Pls-Avl~~~~i 707 (818)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....++ +|+++ ++|.+|++ +| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~---~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP---IGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS---CEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC---cCeEEEEehHH
Confidence 88898886 8999999999999999999995 43321 2233344 68775 57976532 88 88899988
Q ss_pred HhhccCC--------------h-H-------------HH------------------HHH-----------HHHHHHcCC
Q 003466 708 FDSFVGD--------------S-K-------------LW------------------DLE-----------LIQQISSHR 730 (818)
Q Consensus 708 ~~~l~~~--------------~-~-------------~~------------------~~~-----------l~~~l~~~~ 730 (818)
++.+... . . .+ .++ +.+.+++.+
T Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (406)
T 3cai_A 244 MNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLP 323 (406)
T ss_dssp HHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7655321 0 0 11 111 223344554
Q ss_pred CeeEEE---eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC--------------CEEEEECCCCChHHH
Q 003466 731 TVQRVV---ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG--------------NVIYLMCGPCSSPEV 793 (818)
Q Consensus 731 ~v~~vr---g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g--------------~~ir~~ppl~~t~ed 793 (818)
.+.-+. ..+.++.+.+... .+..+.+.|.++||++++.. +.+|+.++..+|++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~ 394 (406)
T 3cai_A 324 LVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAE 394 (406)
T ss_dssp TEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHH
T ss_pred CeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHH
Confidence 432111 1244666666421 14568888999999998642 689999999999999
Q ss_pred HHHHHHHHHH
Q 003466 794 CSQLLLKLYQ 803 (818)
Q Consensus 794 Id~~~~~l~~ 803 (818)
+++++++|++
T Consensus 395 i~~~~~~l~~ 404 (406)
T 3cai_A 395 VDQLVRALAS 404 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 163
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.59 E-value=4.6e-14 Score=157.27 Aligned_cols=192 Identities=12% Similarity=0.029 Sum_probs=129.1
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+.+. +++..+++..+. ..++. +..+.++...+|+++|+++.+. +.+++++||++|++.+++.+. +.|
T Consensus 31 ~~~~~-~~~~~~~~~~~~-~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~-----~~g- 98 (389)
T 3acz_A 31 TFCFD-STQQGADLFMGK-GEGHI-YSRLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFL-----QKG- 98 (389)
T ss_dssp BBCCS-SHHHHHHHHTTC-SSCCC-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTC-----CTT-
T ss_pred ceecC-ChHHHHHhhcCC-CCCcc-cCCCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC-
Confidence 55666 665544443331 11221 2234578899999999999874 578889999999999998651 122
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCcccc---ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~ 568 (818)
.+||+.+..||+..... +...|.. .+.+|
T Consensus 99 ---------------d~vl~~~~~y~~~~~~~~~~~~~~g~~------------------------------~~~v~--- 130 (389)
T 3acz_A 99 ---------------DHLIAGDTLYGCTVSLFTHWLPRFGIE------------------------------VDLID--- 130 (389)
T ss_dssp ---------------CEEEEESSCCHHHHHHHHHHHHHTTCE------------------------------EEEEC---
T ss_pred ---------------CEEEEeCCCchHHHHHHHHHHHHcCCE------------------------------EEEEC---
Confidence 37899999898743221 1111110 00011
Q ss_pred hhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003466 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (818)
Q Consensus 569 ~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lre 648 (818)
.+| .+.+++.+. .++++|++|++ ++..|.+.+ +++|.+
T Consensus 131 -----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~ 168 (389)
T 3acz_A 131 -----------TSD------------------VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIAV 168 (389)
T ss_dssp -----------TTC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHH
T ss_pred -----------CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHH
Confidence 112 145665553 36789999997 888898885 899999
Q ss_pred HHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCcccc-ceeecch-HHHhhc
Q 003466 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (818)
Q Consensus 649 Lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~-~i~~~l 711 (818)
+|++||+++|+||+++++ ..+.. .+..+|++ +++|.++|+..++ |++++++ ++++.+
T Consensus 169 ~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l 229 (389)
T 3acz_A 169 VCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229 (389)
T ss_dssp HHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred HHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHH
Confidence 999999999999999754 22222 23468988 6999999865787 8888988 887654
No 164
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.59 E-value=9.7e-15 Score=161.89 Aligned_cols=295 Identities=11% Similarity=-0.004 Sum_probs=175.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhh-hcccccCC-C--CCChhHHHHH----HHHHhccCCCCCCcEEEeCChh
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAA-RFGHVMFP-E--NVYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~-~~~~~~~~-~--~~~~~~~eLa----e~L~~~~~~~~l~~v~f~~SGs 471 (818)
.++|+.+. ++- +|+|++|+.+++. .+.+.... . ...+...+++ ++|+++++.+ ...++++||+
T Consensus 25 ~~~~~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~--~~~i~~~sGt 95 (405)
T 2vi8_A 25 KIELIASE------NFV-SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE--HANVQPHSGA 95 (405)
T ss_dssp SEECCTTC------CCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred ceeeccCc------ccC-CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC--ceEEEecCcH
Confidence 56676542 233 8999999999986 44321100 0 1123444554 5888888742 2345578999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccc-c--ccccCCCCCCCcCCCCcccCCCccc
Q 003466 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-A--MEAQAPSPYTGFLQQPWYSGRGLFL 548 (818)
Q Consensus 472 eA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-a--ls~tg~~~~~~~~~~p~~~~~~~~~ 548 (818)
+|++.|++.+. ..| ..|++...+ |+.+.. . +...|.. .
T Consensus 96 ~a~~~a~~~~~-----~~g----------------d~Vl~~~~~-~~~~~~~~~~~~~~g~~-~---------------- 136 (405)
T 2vi8_A 96 QANMAVYFTVL-----EHG----------------DTVLGMNLS-HGGHLTHGSPVNFSGVQ-Y---------------- 136 (405)
T ss_dssp HHHHHHHHHHC-----CTT----------------CEEEEECGG-GTCCTTTTCTTSHHHHH-S----------------
T ss_pred HHHHHHHHHhc-----CCC----------------CEEEEeccc-ccchhcccchhhhccce-e----------------
Confidence 99999999871 112 367777654 554422 1 1121110 0
Q ss_pred CCCcccccCcceeecCc---chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003466 549 DPPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (818)
Q Consensus 549 ~~p~~~~~~~~~~v~~P---~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv 625 (818)
..+.+| ..+ ..| .+.+++.+.+ .++++|++
T Consensus 137 -----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~ 169 (405)
T 2vi8_A 137 -----------NFVAYGVDPETH-----------VID------------------YDDVREKARL-------HRPKLIVA 169 (405)
T ss_dssp -----------EEEEECBCTTTC-----------SBC------------------HHHHHHHHHH-------HCCSEEEE
T ss_pred -----------EEEecccccccC-----------CcC------------------HHHHHHHHHh-------cCCeEEEE
Confidence 000111 000 112 2556666652 13467777
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEE--EecccccCCccccceee
Q 003466 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVIPLAATL 702 (818)
Q Consensus 626 EPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgKgLggGy~PlsAvl 702 (818)
.|... |... .+++|+++|++||+++|+||+++ +|+++... ...++ .+|++ +++|+++|+. .|+++
T Consensus 170 ~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~--gG~~~ 237 (405)
T 2vi8_A 170 AAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPR--GGMIL 237 (405)
T ss_dssp CCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTTTCSEEEEESSSTTCCCS--CEEEE
T ss_pred eCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccccCCEEEEeccccCCCCC--CeEEE
Confidence 55312 3222 38999999999999999999996 66654321 11222 58887 7999998652 38888
Q ss_pred cchHHHhhccC-------Ch--H-----------HH---------------HHHHHHHHHcCCCeeEE--EeeeeEEEEE
Q 003466 703 ATNAVFDSFVG-------DS--K-----------LW---------------DLELIQQISSHRTVQRV--VALGTLCAIE 745 (818)
Q Consensus 703 ~~~~i~~~l~~-------~~--~-----------~~---------------~~~l~~~l~~~~~v~~v--rg~Gl~~~ie 745 (818)
+++++++.+.. .. . .+ .+.+.+.|++.+ +.-+ .+.+.++.+.
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~ 316 (405)
T 2vi8_A 238 CQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNHLLLVD 316 (405)
T ss_dssp ECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEE
T ss_pred EcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCceEEEEE
Confidence 88888764421 11 0 00 011233444443 2111 2356777777
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEeec-----------CCEEEEECCC----CChHHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------GNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl----~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.... .....+.+.|.++||+++++ ++.+|++++. .++++|+++++++|+++++++.
T Consensus 317 ~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 317 LRPQQ-------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CGGGT-------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred ccCCC-------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 75321 11456778889999999873 3579999987 6889999999999999987764
No 165
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.58 E-value=7.1e-15 Score=163.39 Aligned_cols=291 Identities=15% Similarity=0.049 Sum_probs=179.4
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
++|.+ .+.+.+++.+++.+...........+...++.++|+++++.+ .+.+ ++++||++|++.+++.+ . ..
T Consensus 14 ~~~p~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l---~--~~- 85 (416)
T 3isl_A 14 IMTPG-PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASV---I--EP- 85 (416)
T ss_dssp ECSSS-SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHH---C--CT-
T ss_pred eecCC-CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHh---c--CC-
Confidence 35555 555555565555543211111112455788999999988754 2444 48899999999999866 1 12
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
..+||+.+.+||+.... .+...|... ..++.+...
T Consensus 86 ---------------gd~Vl~~~~~~~~~~~~~~~~~~g~~~----------------------------~~v~~~~~~- 121 (416)
T 3isl_A 86 ---------------EDDVLIPIYGRFGYLLTEIAERYGANV----------------------------HMLECEWGT- 121 (416)
T ss_dssp ---------------TCEEEEEESSHHHHHHHHHHHHTTCEE----------------------------EEEECCTTC-
T ss_pred ---------------CCEEEEecCCcccHHHHHHHHhcCCee----------------------------EEEecCCCC-
Confidence 24799999999984322 122222110 011111000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL 649 (818)
..| .+.+++.+.+ +++++|+++.+ ++..|.+.+ +++|.++
T Consensus 122 ----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l 161 (416)
T 3isl_A 122 ----------VFD------------------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEA 161 (416)
T ss_dssp ----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHH
T ss_pred ----------CCC------------------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHH
Confidence 001 2566777752 24578999987 898998876 8999999
Q ss_pred HHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccCC-------------
Q 003466 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD------------- 714 (818)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~~------------- 714 (818)
|++||+++|+||+++ +|... +....+ .+|+++++ |.++|+ .++|++++++++++.+...
T Consensus 162 ~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~ 235 (416)
T 3isl_A 162 CRTEDALFIVDAVAT-IGGCE--VKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIAARKKVERGIATQADR 235 (416)
T ss_dssp HHHTTCEEEEECTTT-TTTSC--CCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHHTC-------------
T ss_pred HHHcCCEEEEECCcc-ccCCC--cchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhhccccccccccccccc
Confidence 999999999999995 43221 112222 36887655 998887 5789999999887554310
Q ss_pred -------------------------------hH-------------HHH---------------HHHHHHHHcCCC-e-e
Q 003466 715 -------------------------------SK-------------LWD---------------LELIQQISSHRT-V-Q 733 (818)
Q Consensus 715 -------------------------------~~-------------~~~---------------~~l~~~l~~~~~-v-~ 733 (818)
.. .+. +.+.+.+++.+. + .
T Consensus 236 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 315 (416)
T 3isl_A 236 AALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFG 315 (416)
T ss_dssp -----CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCS
T ss_pred hhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEecc
Confidence 00 000 112333443321 1 1
Q ss_pred E-EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEECCCCChHHH-HHHHHHHHHHHH
Q 003466 734 R-VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMCGPCSSPEV-CSQLLLKLYQRL 805 (818)
Q Consensus 734 ~-vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~ppl~~t~ed-Id~~~~~l~~~l 805 (818)
. -...+.++.+.+... ..+..+.+.|.++ ||+++++ ++.+|+.++...+++| +++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 316 DDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp CGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 0 011356676766422 1255788899887 9999862 4789999977666666 999999999998
Q ss_pred HHH
Q 003466 806 EEF 808 (818)
Q Consensus 806 ~~l 808 (818)
+++
T Consensus 388 ~~~ 390 (416)
T 3isl_A 388 LRH 390 (416)
T ss_dssp HHT
T ss_pred HHc
Confidence 876
No 166
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.58 E-value=2.9e-14 Score=163.23 Aligned_cols=296 Identities=11% Similarity=0.006 Sum_probs=180.5
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC---CCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcc
Q 003466 413 PDATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (818)
Q Consensus 413 lGh~~hp~V~eAi~~q~~~~~~~~~---~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~ 489 (818)
.+|. +|++++++.++...+..... ..+..+...+++++|++++|.+ ..++++++|++|+..|++++ |.+...+
T Consensus 75 ~~~~-~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~ 150 (474)
T 1wyu_B 75 TMKY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDR 150 (474)
T ss_dssp CCCC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHT
T ss_pred cccC-CHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhc
Confidence 4577 89999999887322211110 0111356788999999988742 23567899999999999998 5442222
Q ss_pred cccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhh
Q 003466 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (818)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~ 569 (818)
|+ .++|.+||+.+ .+|+++..++...|... ..++....+
T Consensus 151 Gd-----------~~~r~~Vlv~~-~~h~~~~~~~~~~G~~v----------------------------v~v~~~~~~- 189 (474)
T 1wyu_B 151 GE-----------GRTRRVVLVPD-SAHGSNPATASMAGYQV----------------------------REIPSGPEG- 189 (474)
T ss_dssp TC-----------TTTCCEEEEET-TSCTHHHHHHHHTTCEE----------------------------EEECBCTTS-
T ss_pred CC-----------ccCCCEEEEeC-CcChhhHHHHHHCCCEE----------------------------EEecCCCCC-
Confidence 21 01244666655 78888877665544321 011110000
Q ss_pred hhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH
Q 003466 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (818)
Q Consensus 570 ~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreL 649 (818)
.-| .+.|++.+. +++++|+++.. . ..|.+. ..+++|.++
T Consensus 190 ----------~~d------------------~~~L~~~i~--------~~t~~v~~~~p-n-~~G~~~---~~l~~i~~l 228 (474)
T 1wyu_B 190 ----------EVD------------------LEALKRELG--------PHVAALMLTNP-N-TLGLFE---RRILEISRL 228 (474)
T ss_dssp ----------SBC------------------HHHHHHHCS--------TTEEEEEECSS-C-TTSCCC---TTHHHHHHH
T ss_pred ----------CcC------------------HHHHHHhhC--------CCceEEEEECC-C-CCcccC---CCHHHHHHH
Confidence 001 256676664 35789999974 4 467652 249999999
Q ss_pred HHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCC----ccccceeecchHHHhhccC----------
Q 003466 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFVG---------- 713 (818)
Q Consensus 650 c~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggG----y~PlsAvl~~~~i~~~l~~---------- 713 (818)
|++||+++|+||++. .+.+|.. ....+| +|++++ +|.+++. -.++|++++++++++.+..
T Consensus 229 ~~~~g~~li~Dea~~-~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~ 304 (474)
T 1wyu_B 229 CKEAGVQLYYDGANL-NAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGF 304 (474)
T ss_dssp HHHHTCEEEEEGGGG-GGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCE
T ss_pred HHHcCCEEEEeCchh-hhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCee
Confidence 999999999999994 3334422 112234 899987 8988632 2589999999988776541
Q ss_pred -------------C----hH--------HHH------------------HHHHHHHHcCCCeeEEEeeeeE--EEEEEec
Q 003466 714 -------------D----SK--------LWD------------------LELIQQISSHRTVQRVVALGTL--CAIELQA 748 (818)
Q Consensus 714 -------------~----~~--------~~~------------------~~l~~~l~~~~~v~~vrg~Gl~--~~iel~~ 748 (818)
. .. .+. +.+.+.|++.+ +.-+.+.+.+ +.+.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~ 383 (474)
T 1wyu_B 305 YLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPE 383 (474)
T ss_dssp EEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCST
T ss_pred EecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cEecCCCCcceEEEEEcCC
Confidence 0 00 110 11223344432 1111111111 2222310
Q ss_pred CcccCCCchHHHHHHHHHHHhCCceEee------cCCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 749 AGCNAGYGSLYAASLLKKLREDGVYMRP------LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 749 ~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------~g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
. ..+..+++.|.++||++.. .++.+|+.++..+|++|+++++++|++++++
T Consensus 384 ~--------~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 384 G--------FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp T--------CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred C--------CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 1 1256788999999998642 1478999999999999999999999988765
No 167
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.58 E-value=4.8e-15 Score=164.06 Aligned_cols=301 Identities=11% Similarity=0.009 Sum_probs=160.8
Q ss_pred EEeCCcCccccceeecccccccccCCCCCCHHHHHHHHHhhhhcccccC-----CCCCChhHHHHHHHHHhccCCCCCCc
Q 003466 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASR 463 (818)
Q Consensus 389 v~D~dG~~~~~~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~-----~~~~~~~~~eLae~L~~~~~~~~l~~ 463 (818)
.++.++. -|||+.+. +.. +|++.+|+.+++++...... .....+...++.++|+++++.. .+.
T Consensus 15 ~~~~~~~----iyld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAAT------TRV-DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCCC------SSS-CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCCC------CCC-CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 4445666 79998762 356 89999999999875421100 0012345678999999988743 358
Q ss_pred EEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCcccccccc---CCCCCCCcCCCCc
Q 003466 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ---APSPYTGFLQQPW 540 (818)
Q Consensus 464 v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~t---g~~~~~~~~~~p~ 540 (818)
++|+++|++|++.+++.+. .++...| ...||+.+..|++.. .++... |..
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~g---------------d~~Vl~~~~~~~~~~-~~~~~~~~~g~~---------- 135 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERTG---------------RRHIITSAIEHKAVL-EPLEHLAGRGFE---------- 135 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHHT---------------CCEEEEETTSCHHHH-HHHHHHHTTTCE----------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccCC---------------CCEEEECccccHhHH-HHHHHHHhcCCe----------
Confidence 9999999999999999873 2222211 115666666665432 222211 110
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 003466 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (818)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i 620 (818)
...++....+ ..| .+.+++.+. .++
T Consensus 136 ------------------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~ 160 (400)
T 3vax_A 136 ------------------VDFLTPGPSG-----------RIS------------------VEGVMERLR--------PDT 160 (400)
T ss_dssp ------------------EEEECCCTTC-----------CCC------------------HHHHHTTCC--------TTE
T ss_pred ------------------EEEEccCCCC-----------CcC------------------HHHHHHhcC--------CCc
Confidence 0011111000 011 145555553 367
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPL 698 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~Pl 698 (818)
++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|+++++ | +.|+ .++
T Consensus 161 ~~v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~ 227 (400)
T 3vax_A 161 LLVSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGV 227 (400)
T ss_dssp EEEECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSC
T ss_pred eEEEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-Cce
Confidence 89999997 898998876 8999999999999999999995 43322 122234 8998766 9 4443 357
Q ss_pred ceee-cch--------HHHhhccC---------ChH-------------HHH--------------HHHHHHHHcCCCee
Q 003466 699 AATL-ATN--------AVFDSFVG---------DSK-------------LWD--------------LELIQQISSHRTVQ 733 (818)
Q Consensus 699 sAvl-~~~--------~i~~~l~~---------~~~-------------~~~--------------~~l~~~l~~~~~v~ 733 (818)
|+++ +++ .+...+.. ... .+. +.+.+.++ .+.+.
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~ 306 (400)
T 3vax_A 228 GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQ 306 (400)
T ss_dssp EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCE
T ss_pred EEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEE
Confidence 8887 766 11111110 000 000 11223333 33332
Q ss_pred EEE----eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------------------------CCEEEEEC
Q 003466 734 RVV----ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------------------------GNVIYLMC 785 (818)
Q Consensus 734 ~vr----g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------------------------g~~ir~~p 785 (818)
-+. ..+.++.+.+... .+..+.+.|. +||.++++ .+.+|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~ 376 (400)
T 3vax_A 307 VNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSW 376 (400)
T ss_dssp ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEE
T ss_pred EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEc
Confidence 111 1234555555321 1456788888 89987652 38899999
Q ss_pred -CCCChHHHHHHHHHHHHHHHHH
Q 003466 786 -GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 786 -pl~~t~edId~~~~~l~~~l~~ 807 (818)
+..+|++|+++++++|++++++
T Consensus 377 ~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 377 TPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EEC--------------------
T ss_pred cCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
No 168
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.57 E-value=5.2e-14 Score=152.59 Aligned_cols=277 Identities=14% Similarity=0.032 Sum_probs=177.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++++|+.+++.. +. .....+...++.++|+++++.+ .+.++++++|++|++.+++.+. ..|
T Consensus 13 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~-----~~g------- 75 (352)
T 1iug_A 13 HPKALEALARPQLH--HR--TEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF-----APG------- 75 (352)
T ss_dssp CHHHHHHHHSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC-----CTT-------
T ss_pred CHHHHHHhccCCCC--cc--CHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhcc-----CCC-------
Confidence 89999999988753 11 0012345678999999988743 2589999999999999999761 122
Q ss_pred CCccccccceEEEEEcCCCCCCccccc-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~al-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (818)
.+|++.+.+||+.....+ ...|.. ...++.+..+
T Consensus 76 ---------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 110 (352)
T 1iug_A 76 ---------ERVLVPVYGKFSERFYEIALEAGLV----------------------------VERLDYPYGD-------- 110 (352)
T ss_dssp ---------CEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred ---------CeEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 378999999998541111 111111 0011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--C
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--K 654 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--g 654 (818)
..|+ + .|+ . .++++|+++.. ++..|.+.+ +++|.++|++| |
T Consensus 111 ---~~d~------------------~----~l~-----~--~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 111 ---TPRP------------------E----DVA-----K--EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNPE 153 (352)
T ss_dssp ---CCCT------------------T----TSC-----C--SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTT
T ss_pred ---CCCH------------------H----HHh-----c--cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCCC
Confidence 0111 1 111 1 34568888886 888898876 89999999999 9
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCccccceeecchHHHhhcc--------------------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV-------------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~-------------------- 712 (818)
+++|+||+++ +|... +....+ .+|+++ ++|.++|+ ..+|++++++++++.+.
T Consensus 154 ~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (352)
T 1iug_A 154 GLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALERLKPRGYYLDLARELKAQKEGES 227 (352)
T ss_dssp CEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCC
T ss_pred CEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCC
Confidence 9999999994 55432 222223 378775 46988875 35788999988764310
Q ss_pred CChH-------------HH--------------HHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 713 GDSK-------------LW--------------DLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 713 ~~~~-------------~~--------------~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.... .+ .+.+.+.+++.+ +.-+. ..+.++.+.+... ..+..+
T Consensus 228 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 298 (352)
T 1iug_A 228 AWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG-LRPVPKRFSPAVAAFYLPEG--------VPYARV 298 (352)
T ss_dssp SSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTT-CEESCSSBCTTCEEEECCTT--------CCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CcccccccCCeEEEEEcCCC--------CCHHHH
Confidence 0100 00 011233444442 21111 1466777766421 124568
Q ss_pred HHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.|.++||++.+. .+.+|+.++..+|++|+++++++|+++++++
T Consensus 299 ~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 299 KEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999874 3789999999889999999999999988765
No 169
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.57 E-value=1.1e-14 Score=160.23 Aligned_cols=277 Identities=12% Similarity=0.037 Sum_probs=164.1
Q ss_pred cCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 412 ~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+|++ +|.+.+++.+++.+...... ....+...++.++|+++++. +.++|++||++|++.|++.+ + -..
T Consensus 7 ~l~~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~i~~~sgt~al~~~l~~l-~---~~~-- 75 (373)
T 3frk_A 7 SFKPM-HDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCNV---NYCIGCGNGLDALHLILKGY-D---IGF-- 75 (373)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHT-T---CCT--
T ss_pred CCCcc-cCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--
Confidence 35556 66665555555443211111 13467889999999999973 68999999999999999976 1 011
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~ 570 (818)
..+||+...+||+.. .++...|.... .++.. +.+
T Consensus 76 --------------gd~Vi~~~~~~~~~~-~~~~~~g~~~~----------------------------~~~~~~~~~-- 110 (373)
T 3frk_A 76 --------------GDEVIVPSNTFIATA-LAVSYTGAKPI----------------------------FVEPDIRTY-- 110 (373)
T ss_dssp --------------TCEEEEETTSCTHHH-HHHHHHSCEEE----------------------------EECEETTTT--
T ss_pred --------------cCEEEECCCCcHHHH-HHHHHcCCEEE----------------------------EEecccccc--
Confidence 237888888888743 33333332210 00000 000
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
--|+ +.+++.+. .++++|++. ...|...+ +++|.++|
T Consensus 111 ---------~~d~------------------~~l~~~l~--------~~~~~v~~~----n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 111 ---------NIDP------------------SLIESAIT--------EKTKAIIAV----HLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp ---------EECG------------------GGTGGGCC--------TTEEEEEEE----CCTTCCCC----HHHHHHHH
T ss_pred ---------CcCH------------------HHHHHhcC--------CCCeEEEEE----CCCcCccc----HHHHHHHH
Confidence 0011 23344442 367777733 34555544 89999999
Q ss_pred HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeecc-hHHHhhcc---CC-------
Q 003466 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDSFV---GD------- 714 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~~-~~i~~~l~---~~------- 714 (818)
++||+++|+||+|+ +| ..+....++..+|++++| |++++ |. .|+++++ +++++.+. ..
T Consensus 148 ~~~~~~li~D~a~~-~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 221 (373)
T 3frk_A 148 KKYNLKLIEDAAQA-HG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYH 221 (373)
T ss_dssp HHHTCEEEEECTTC-TT---CEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTB
T ss_pred HHcCCEEEEECCcc-cC---CEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCc
Confidence 99999999999995 32 223334566668999988 99988 73 6667765 44543221 10
Q ss_pred ----------hH------H-----H----------HHHHHHHHHcCCCeeEEE-----eee--eEEEEEEecCcccCCCc
Q 003466 715 ----------SK------L-----W----------DLELIQQISSHRTVQRVV-----ALG--TLCAIELQAAGCNAGYG 756 (818)
Q Consensus 715 ----------~~------~-----~----------~~~l~~~l~~~~~v~~vr-----g~G--l~~~iel~~~~~~~~~~ 756 (818)
.. . + .+.+.+.++..+ +. +. ... ..+.+...
T Consensus 222 ~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~--------- 290 (373)
T 3frk_A 222 HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VI-IPVEADYAKHVWYTFVIRSE--------- 290 (373)
T ss_dssp CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EE-CCCCCTTEECCCSSEEEEES---------
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eE-eccCCCCCceeeEEEEEEeC---------
Confidence 00 0 0 011222223332 11 10 011 11222211
Q ss_pred hHHHHHHHHHHHhCCceEeecC----------------------------CEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 757 SLYAASLLKKLREDGVYMRPLG----------------------------NVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 757 ~~~a~~~~~~l~e~Gvlv~p~g----------------------------~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+..+.+.|.++||.+++.- ..+|+.....+|++|||+++++|++...
T Consensus 291 --~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 --KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp --SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred --CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 25578899999999998421 5799988899999999999999987654
No 170
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.57 E-value=1.5e-14 Score=159.90 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=178.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCC-cEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~-~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
+|++.+|+.+++.. +. .........++.++|+++++.. .+ .++++++|++|++.+++.+. ..|
T Consensus 30 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~-----~~g------ 93 (396)
T 2ch1_A 30 SKRVLTAMTNTVLS--NF--HAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLL-----EEG------ 93 (396)
T ss_dssp CHHHHHHTTSCCCC--TT--CHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-----CTT------
T ss_pred CHHHHHHhcccccc--CC--ChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhc-----CCC------
Confidence 78899888876542 11 0011234778999999988753 24 69999999999999999761 122
Q ss_pred CCCccccccceEEEEEcCCCCCCcc-ccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~-~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+|++.+.+||+... ......|.. ...++.+..+
T Consensus 94 ----------d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 128 (396)
T 2ch1_A 94 ----------DRVLIAVNGIWAERAVEMSERYGAD----------------------------VRTIEGPPDR------- 128 (396)
T ss_dssp ----------CEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTS-------
T ss_pred ----------CeEEEEcCCcccHHHHHHHHHcCCc----------------------------eEEecCCCCC-------
Confidence 379999999998421 111222211 0111111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.+ .++++|+++.. ++..|.+.+ +++|.++|++||+
T Consensus 129 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 174 (396)
T 2ch1_A 129 ----PFS------------------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHDC 174 (396)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcCC
Confidence 111 2556666652 14568888886 788888876 8999999999999
Q ss_pred cEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCccccceeecchHHHhhccC--------------------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG-------------------- 713 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~i~~~l~~-------------------- 713 (818)
++|+||+++ +|... ...+. ..+|+++.+ |.++++ ..+|++++++++++.+..
T Consensus 175 ~li~Dea~~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (396)
T 2ch1_A 175 LLIVDAVAS-LCGVP--FYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWG 248 (396)
T ss_dssp EEEEECTTT-BTTBC--CCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred EEEEEcccc-ccCCc--cchhh--cCcCEEEEcCCccccCC-CCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhh
Confidence 999999995 65432 12222 247988866 999886 467888888887654311
Q ss_pred ---------C--hH-----------HH---------------HHHHHHHHHcCCC--eeEE--EeeeeEEEEEEecCccc
Q 003466 714 ---------D--SK-----------LW---------------DLELIQQISSHRT--VQRV--VALGTLCAIELQAAGCN 752 (818)
Q Consensus 714 ---------~--~~-----------~~---------------~~~l~~~l~~~~~--v~~v--rg~Gl~~~iel~~~~~~ 752 (818)
. .. .+ .+.+.+.+++++. +... ...+.++.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~--- 325 (396)
T 2ch1_A 249 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKG--- 325 (396)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTT---
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCC---
Confidence 0 00 00 0112233333321 1110 01234566665321
Q ss_pred CCCchHHHHHHHHHHHhC-CceEeec-----CCEEEEEC-CCCChHHHHHHHHHHHHHHHHHHH
Q 003466 753 AGYGSLYAASLLKKLRED-GVYMRPL-----GNVIYLMC-GPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 753 ~~~~~~~a~~~~~~l~e~-Gvlv~p~-----g~~ir~~p-pl~~t~edId~~~~~l~~~l~~l~ 809 (818)
..+..+.+.|+++ ||+++++ ++.+|+.+ +..++++|+++++++|+++++++.
T Consensus 326 -----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 326 -----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp -----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 1255788889875 9999873 47899999 677899999999999999988764
No 171
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.55 E-value=1.6e-13 Score=151.54 Aligned_cols=275 Identities=14% Similarity=0.090 Sum_probs=178.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.+++++|+.+++++..+ ...+...++.++|+++++. +.+++++||++|++.+++.+ + . ..
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~--~~-------- 78 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I--GE-------- 78 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C--CT--------
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C--CC--------
Confidence 68999999999876422 1356788999999999873 58999999999999999976 1 1 11
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
..+|++...+||+.. .++...|.... .++.. +.+
T Consensus 79 --------gd~Vl~~~~~~~~~~-~~~~~~g~~~~----------------------------~v~~~~~~~-------- 113 (393)
T 1mdo_A 79 --------GDEVITPSMTWVSTL-NMIVLLGANPV----------------------------MVDVDRDTL-------- 113 (393)
T ss_dssp --------TCEEEEESSSCHHHH-HHHHHTTCEEE----------------------------EECBCTTTC--------
T ss_pred --------CCEEEeCCCccHhHH-HHHHHCCCEEE----------------------------EEeccCCcC--------
Confidence 237888888888743 33333332100 01100 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|++.+. . |...+ +++|.++|++||++
T Consensus 114 ---~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 ---MVT------------------PEHIEAAIT--------PQTKAIIPVHY-A---GAPAD----LDAIYALGERYGIP 156 (393)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------CCceEEEEeCC-C---CCcCC----HHHHHHHHHHcCCe
Confidence 111 255666664 25788888774 3 44433 89999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhcc---C-C------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---G-D------------ 714 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~---~-~------------ 714 (818)
+|+||+++ |+...|+. ++. +|++++| |+++|| .+|+++++ +++++.+. . .
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGG 228 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC--------
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhhccc
Confidence 99999997 44344432 233 8999888 999887 47778876 67655321 0 0
Q ss_pred ----------------hH---------------------HHHHHHHHHHHcCCCee-------EEEeeeeEEEEEEecCc
Q 003466 715 ----------------SK---------------------LWDLELIQQISSHRTVQ-------RVVALGTLCAIELQAAG 750 (818)
Q Consensus 715 ----------------~~---------------------~~~~~l~~~l~~~~~v~-------~vrg~Gl~~~iel~~~~ 750 (818)
.. .+.+.+.+.+.+.+ +. ..++.+.++.+.+....
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 307 (393)
T 1mdo_A 229 RAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEAR 307 (393)
T ss_dssp ---CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHH
T ss_pred ccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccc
Confidence 00 00112344555555 21 13345566777775310
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeec--------------------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
. ...+..+.+.|.++||.+++. ...+|+.+...+|++|+++++++|+++
T Consensus 308 ~-----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 308 C-----GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp H-----SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred c-----ccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 0 012557888999999988762 126999888889999999999999988
Q ss_pred HHHH
Q 003466 805 LEEF 808 (818)
Q Consensus 805 l~~l 808 (818)
++..
T Consensus 383 ~~~~ 386 (393)
T 1mdo_A 383 AGQG 386 (393)
T ss_dssp HC--
T ss_pred HhcC
Confidence 7553
No 172
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.55 E-value=2.4e-14 Score=158.62 Aligned_cols=274 Identities=14% Similarity=0.052 Sum_probs=166.2
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCC
Q 003466 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (818)
Q Consensus 419 p~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~ 498 (818)
+++.+++.+++....+ ....+...+|.+.|+++++. +.++|++||++|++.|++.+ + . ..
T Consensus 36 ~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~-~--~~--------- 95 (391)
T 3dr4_A 36 GNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-G-I--GP--------- 95 (391)
T ss_dssp SSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-T-C--CT---------
T ss_pred HHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C-C--CC---------
Confidence 4567777766654221 12467889999999999974 58999999999999999977 1 1 11
Q ss_pred CccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhcccccc
Q 003466 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (818)
Q Consensus 499 ~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~~ 577 (818)
..+|++...+||+....+ ...|.... .++.. +.+
T Consensus 96 -------gd~vl~~~~~~~~~~~~~-~~~g~~~~----------------------------~~~~~~~~~--------- 130 (391)
T 3dr4_A 96 -------GDEVIVPSLTYIASANSV-TYCGATPV----------------------------LVDNDPRTF--------- 130 (391)
T ss_dssp -------TCEEEEESSSCTHHHHHH-HHTTCEEE----------------------------EECBCTTTC---------
T ss_pred -------cCEEEECCCchHHHHHHH-HHCCCEEE----------------------------EEecCcccc---------
Confidence 247899999998864332 22221100 01100 000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..|+ +.+++.+. .++++|++.. ..|...+ +++|.++|++||+++
T Consensus 131 --~~d~------------------~~l~~~~~--------~~~~~v~~~n----~tG~~~~----~~~i~~l~~~~~~~l 174 (391)
T 3dr4_A 131 --NLDA------------------AKLEALIT--------PRTKAIMPVH----LYGQICD----MDPILEVARRHNLLV 174 (391)
T ss_dssp --SBCG------------------GGSGGGCC--------TTEEEECCBC----GGGCCCC----HHHHHHHHHHTTCEE
T ss_pred --CcCH------------------HHHHHhcC--------CCceEEEEEC----CCCChhh----HHHHHHHHHHcCCEE
Confidence 0011 22333332 3567777443 2355443 999999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhccC-------------------
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG------------------- 713 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~~------------------- 713 (818)
|+||+++ + |..+.....+..+|++++| |+|+||. .|+++++ +++++.+..
T Consensus 175 i~D~a~~-~---g~~~~~~~~~~~~di~~~S~s~~K~l~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 248 (391)
T 3dr4_A 175 IEDAAEA-V---GATYRGKKSGSLGDCATFSFFGNAIITTGE--GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGF 248 (391)
T ss_dssp EEECTTC-T---TCEETTEETTSSSSEEEEECBTTSSSCCBS--CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCC
T ss_pred EEECccc-c---cceECCeeecccCCEEEEECCCCCcCCcCC--eEEEEECCHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 9999995 2 2222223445557999888 9998863 6777665 445433210
Q ss_pred -Ch--H---------------------HHHHHHHHHHHcCCC-eeEE------EeeeeEEEEEEecCcccCCCchHHHHH
Q 003466 714 -DS--K---------------------LWDLELIQQISSHRT-VQRV------VALGTLCAIELQAAGCNAGYGSLYAAS 762 (818)
Q Consensus 714 -~~--~---------------------~~~~~l~~~l~~~~~-v~~v------rg~Gl~~~iel~~~~~~~~~~~~~a~~ 762 (818)
.. . .+.+.+.+.+++.+. +... +..+.++.+.+.... ......
T Consensus 249 ~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~ 322 (391)
T 3dr4_A 249 NYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGL------STTRDQ 322 (391)
T ss_dssp BCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSC------SSCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCcc------chhHHH
Confidence 00 0 001123334444321 1111 233445566664310 012557
Q ss_pred HHHHHHhCCceEeec-------------------------CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 763 LLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 763 ~~~~l~e~Gvlv~p~-------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+.|.++||.+++. ...+|+.+...+|++||++++++|++++
T Consensus 323 l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 323 VIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 889999999999864 2578998888999999999999997653
No 173
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.55 E-value=2.7e-14 Score=162.05 Aligned_cols=288 Identities=11% Similarity=0.007 Sum_probs=163.4
Q ss_pred CCCCHHHHHHHHHhhh-hcccccC----CCCC--ChhHHHHH-HHHHhccCCCCCCcEEE-eCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTAA-RFGHVMF----PENV--YEPALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~-~~~~~~~----~~~~--~~~~~eLa-e~L~~~~~~~~l~~v~f-~~SGseA~e~ALklA~r~~ 485 (818)
+. +|+|++|+.+++. .+.+... ..+. .+...+++ ++++++++. +.+.+ ++||++|++.|++.++
T Consensus 56 ~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~--- 128 (447)
T 3h7f_A 56 FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALM--- 128 (447)
T ss_dssp CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC---
T ss_pred CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhc---
Confidence 45 8999999999985 4543211 0111 12335677 899998874 56666 9999999999999771
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCcccc--ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~a--ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
+.| ..|++.+.+|++....+ +..++.. + ..++
T Consensus 129 --~~G----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 162 (447)
T 3h7f_A 129 --SPG----------------ERLLGLDLANGGHLTHGMRLNFSGKL-Y---------------------------ENGF 162 (447)
T ss_dssp --CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHS-S---------------------------EEEE
T ss_pred --CCC----------------CEEEecCcccccccchhhhhhhcCCe-e---------------------------EEEE
Confidence 222 37888888887632111 1121110 0 0001
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLF 642 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG~~~~p~~f 642 (818)
+|..- .+ .+.| .+.+++.+.. .+..+|++ .|. .+.++ +
T Consensus 163 ~~~~~-------~~-~~~d------------------~~~l~~~i~~-------~~~~~i~~~~~~-~~~~~-------~ 201 (447)
T 3h7f_A 163 YGVDP-------AT-HLID------------------MDAVRATALE-------FRPKVIIAGWSA-YPRVL-------D 201 (447)
T ss_dssp ECCCT-------TT-CSCC------------------HHHHHHHHHH-------HCCSEEEEECSS-CCSCC-------C
T ss_pred cCcCc-------cc-CCcC------------------HHHHHHHHHh-------cCCeEEEEcCCC-CCCcc-------C
Confidence 11000 00 0122 2556666642 12235666 565 43332 6
Q ss_pred HHHHHHHHHhcCCcEEEeecc-cCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC-----
Q 003466 643 QRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD----- 714 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~-TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~----- 714 (818)
+++|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++| .+.|.+++++++++.+...
T Consensus 202 l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~G--~~gG~i~~~~~~~~~l~~~~~~~~ 276 (447)
T 3h7f_A 202 FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLGG--GRSGLIVGKQQYAKAINSAVFPGQ 276 (447)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGCC--CSCEEEEECGGGHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCCC--CCeEEEEECHHHHHHHhhhcCCcc
Confidence 999999999999999999997 4665555432211 1 24766 67999974 4667788888776644211
Q ss_pred --h-----H------H------H----H-------HHHHHHHHcC----CCeeEEE--eeeeEEEEEEecCcccCCCchH
Q 003466 715 --S-----K------L------W----D-------LELIQQISSH----RTVQRVV--ALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 --~-----~------~------~----~-------~~l~~~l~~~----~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~ 758 (818)
. . . . . +.+.+.|.+. +.+..+. ..+.++.+++.... .
T Consensus 277 ~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 349 (447)
T 3h7f_A 277 QGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP-------L 349 (447)
T ss_dssp CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS-------C
T ss_pred cCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC-------C
Confidence 0 0 0 0 0 1122233322 1111111 12334445553221 1
Q ss_pred HHHHHHHHHHhCCceEe----ec-------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMR----PL-------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~----p~-------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
....+.+.|.++||++. |. .+.+|+.+|.. ++++|+++++++|++++++.
T Consensus 350 ~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 350 DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 13345566667799987 32 25688887775 67999999999999998764
No 174
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.55 E-value=4.5e-14 Score=158.65 Aligned_cols=189 Identities=8% Similarity=0.075 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH-hcCCcEEEeeccc--CcccCCccc-hh--
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~-~~gilLI~DEV~T--GfGRtG~~~-a~-- 675 (818)
+.+++.+. ..++++|++.|..++..|.+. +.+++++|.++|+ +||+++|+||++. +|+..|+.+ ..
T Consensus 168 ~~l~~~l~-------~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVK-------DPQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 56677774 235778887776577788755 8999999999999 9999999999996 576655321 11
Q ss_pred -----cccCCCCcEEEecccccCCccccceeecchHHHhhccCChH----------------HH------HH--------
Q 003466 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK----------------LW------DL-------- 720 (818)
Q Consensus 676 -----e~~gv~PDivtlgKgLggGy~PlsAvl~~~~i~~~l~~~~~----------------~~------~~-------- 720 (818)
+..+...++.+|||.++.| +++|++++++++++.+..... .+ .+
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 318 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAAS 318 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 2345556677999987778 799999999998775532110 01 00
Q ss_pred ------HHHHHHHc----CCCeeEEEe-eeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------C
Q 003466 721 ------ELIQQISS----HRTVQRVVA-LGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----------G 778 (818)
Q Consensus 721 ------~l~~~l~~----~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----------g 778 (818)
.+.+.+.+ .+.+.-+.. .|.++.+++... ....+.+.|.++||++.|. .
T Consensus 319 ~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~ 389 (422)
T 3d6k_A 319 LAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG---------TASRVVELAKEAGIALTGAGSSFPLHNDPNN 389 (422)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT---------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTS
T ss_pred HHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC---------CHHHHHHHHHHCCeEEEcCccccCCCCCCCC
Confidence 11122221 222322222 466677777432 1345677889999999872 2
Q ss_pred CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 779 ~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+.+|++++. .+++++++++++|.++++++.
T Consensus 390 ~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 390 ENIRLAPSL-PPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp CEEEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 679999887 899999999999999987663
No 175
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.55 E-value=3e-14 Score=159.03 Aligned_cols=308 Identities=9% Similarity=0.004 Sum_probs=175.7
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHH-hhhhcc--cccCCCCCChhHHHHHHHHHhccCCC-CCCcEEE--eCChhH
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGY-TAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYF--SDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~-q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f--~~SGse 472 (818)
.+||+.+|...+.-|+. ..|.|.+|+.+ +++... .+....+..+....+++.+....+.. ..+++++ +++|++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~ 109 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence 78999987764444532 16899999999 876311 11111223334445555543321100 0258999 999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+++++ +.+. .| .+|++...+||+....+. ..|...
T Consensus 110 a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~~~~~~~~~~-~~g~~~--------------------- 148 (412)
T 1yaa_A 110 ALHISAKFF-SKFF--PD----------------KLVYLSKPTWANHMAIFE-NQGLKT--------------------- 148 (412)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCTTHHHHHH-TTTCCE---------------------
T ss_pred HHHHHHHHH-HHhC--CC----------------CEEEEeCCCCccHHHHHH-HcCceE---------------------
Confidence 999998876 4332 22 368999999998543222 122110
Q ss_pred ccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 553 ~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
..++. +..+ -.| .+.+++.+.+ .+...+.+++... +
T Consensus 149 -------~~v~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~~~~~~p-~ 186 (412)
T 1yaa_A 149 -------ATYPYWANETK-----------SLD------------------LNGFLNAIQK-----APEGSIFVLHSCA-H 186 (412)
T ss_dssp -------EEEECEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEECSS-C
T ss_pred -------EEEeeecCCCC-----------ccC------------------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 01111 0000 011 2556667753 1222344443443 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCC---ccchh-cccCCCC----c--EEEecccccC-Cccccc
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTA-DLLGCVP----D--IACYGKLLTG-GVIPLA 699 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG---~~~a~-e~~gv~P----D--ivtlgKgLgg-Gy~Pls 699 (818)
+..|.+. +.+.+++|.++|++||+++|+||++++|+..| ..... ...+..+ + +.+++|.+|. | +++|
T Consensus 187 nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG 264 (412)
T 1yaa_A 187 NPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVG 264 (412)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Ccce
Confidence 7777655 78999999999999999999999999997655 22222 2111223 2 3488999997 8 7999
Q ss_pred eee--c-----chH----HHhhccC-------C-hH--------HH---------HH--------------HHHHHHHcC
Q 003466 700 ATL--A-----TNA----VFDSFVG-------D-SK--------LW---------DL--------------ELIQQISSH 729 (818)
Q Consensus 700 Avl--~-----~~~----i~~~l~~-------~-~~--------~~---------~~--------------~l~~~l~~~ 729 (818)
+++ + +++ +++.+.. . .. .+ .+ .+.+.++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988 7 565 6554322 0 01 11 11 122233333
Q ss_pred C---CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 730 R---TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 730 ~---~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
+ .+.-+...|.++.+ +.-+ ...+...+.++||++.+ .+|+.++. ++++++++++++|+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~l~~~gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 345 GTPGNWDHIVNQCGMFSF-TGLT----------PQMVKRLEETHAVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp TCSSCCTHHHHCCSSEEE-CCCC----------HHHHHHHHHHHCEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred CCCCCeeeeccCceEEEe-eCCC----------HHHHHHHHHhCCEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence 3 12111122222222 1101 22354445578999987 36888774 589999999999998876
Q ss_pred H
Q 003466 807 E 807 (818)
Q Consensus 807 ~ 807 (818)
.
T Consensus 410 ~ 410 (412)
T 1yaa_A 410 F 410 (412)
T ss_dssp H
T ss_pred h
Confidence 4
No 176
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.53 E-value=1e-13 Score=154.19 Aligned_cols=285 Identities=11% Similarity=-0.034 Sum_probs=156.5
Q ss_pred CCCCHHHHHHHHHhh-hhcccccC---CCCCChhHHHH----HHHHHhccCCCCCCcE-EEeCChhHHHHHHHHHHHHHh
Q 003466 415 ATLQIELARDMGYTA-ARFGHVMF---PENVYEPALEC----AELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKF 485 (818)
Q Consensus 415 h~~hp~V~eAi~~q~-~~~~~~~~---~~~~~~~~~eL----ae~L~~~~~~~~l~~v-~f~~SGseA~e~ALklA~r~~ 485 (818)
+. +|+|++|+.+++ +.+..... .....+...++ .+++++.++. +.. ++++||++|++.|++.+.
T Consensus 36 ~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~~i~~~sGt~a~~~~~~~~~--- 108 (417)
T 3n0l_A 36 FT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC---KFANVQPNSGSQANQGVYAALI--- 108 (417)
T ss_dssp CC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHS---
T ss_pred CC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC---CCcceEeccHHHHHHHHHHHhc---
Confidence 45 899999999998 44422110 00112333333 4477777764 333 566899999999999771
Q ss_pred hhcccccccccCCCccccccceEEEEEcCCCCCCccc--cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeec
Q 003466 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (818)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~--als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~ 563 (818)
..| .+|++.+.+||+.... .+...+.. ...++
T Consensus 109 --~~g----------------d~vl~~~~~~~~~~~~~~~~~~~g~~----------------------------~~~~~ 142 (417)
T 3n0l_A 109 --NPG----------------DKILGMDLSHGGHLTHGAKVSSSGKM----------------------------YESCF 142 (417)
T ss_dssp --CTT----------------CEEEEECC----------------CC----------------------------SEEEE
T ss_pred --CCC----------------CEEEecccccccccchhhhhhhhcce----------------------------eeeEe
Confidence 222 3788888888764321 11111100 00011
Q ss_pred CcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHH
Q 003466 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (818)
Q Consensus 564 ~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl 643 (818)
+|... + ...| .+.|++.+.+ .++++|++.+ ...|...+ +
T Consensus 143 ~~~~~--------~-~~~d------------------~~~l~~~i~~-------~~~~~v~~~~---~~~G~~~~----l 181 (417)
T 3n0l_A 143 YGVEL--------D-GRID------------------YEKVREIAKK-------EKPKLIVCGA---SAYARVID----F 181 (417)
T ss_dssp ECCCT--------T-SSCC------------------HHHHHHHHHH-------HCCSEEEECC---SSCCSCCC----H
T ss_pred ccCCC--------C-CCcC------------------HHHHHHHHHh-------cCCeEEEECC---cccCccCC----H
Confidence 11000 0 0012 2567777752 2345666544 22466664 9
Q ss_pred HHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCC--CCcEEEec--ccccCCccccceeecc-hHHHhhccC----
Q 003466 644 RILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC--VPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---- 713 (818)
Q Consensus 644 ~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv--~PDivtlg--KgLggGy~PlsAvl~~-~~i~~~l~~---- 713 (818)
++|+++|++||+++|+||+|+ |+...|. ..+. ..|++++| |+++|+ ..|+++++ +++++.+..
T Consensus 182 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~~~~~~~~ 254 (417)
T 3n0l_A 182 AKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVSSTTHKTLRGP--RGGIIMTNDEELAKKINSAIFP 254 (417)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEEEESSTTTCSC--SCEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEEeeCccccCCC--CeeEEEECCHHHHHHHhhhhCC
Confidence 999999999999999999974 3322222 1111 35888777 999664 47888887 677664421
Q ss_pred C---h--H-----------H-H--------------HHHHHHHHHcCCCeeEEE--eeeeEEEEEEecCcccCCCchHHH
Q 003466 714 D---S--K-----------L-W--------------DLELIQQISSHRTVQRVV--ALGTLCAIELQAAGCNAGYGSLYA 760 (818)
Q Consensus 714 ~---~--~-----------~-~--------------~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~~~~~~~~~~~~a 760 (818)
. . . . + .+.+.+.+.+.+ +.-+. ..+.++.+.+.... ...
T Consensus 255 ~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~-------~~~ 326 (417)
T 3n0l_A 255 GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNHLVLMSFLDRE-------FSG 326 (417)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTSS-------SCH
T ss_pred cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCceEEEEEcccCC-------CCH
Confidence 1 0 0 0 0 011223344422 21111 12334445543221 124
Q ss_pred HHHHHHHHhCCceEeec-----------CCEEEEECCCC----ChHHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPL-----------GNVIYLMCGPC----SSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~-----------g~~ir~~ppl~----~t~edId~~~~~l~~~l~~l 808 (818)
..+.+.|.++||++++. .+.+|+.++.. ++++||++++++|.+++++.
T Consensus 327 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 327 KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 56777888999999842 25688887643 67899999999999998764
No 177
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.53 E-value=1.2e-13 Score=150.02 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=169.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccC---CCCCCcEEEeCChhHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~---~~~l~~v~f~~SGseA~e~ 476 (818)
++||+.++.. .++ . +|++.+|+.+++.+.+...+ ......++.+.|+++++ .. .+.++++++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y---~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP-F-PEDLVDEVFRRLNSDALRIY---YDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC-C-CHHHHHHHHHTCCGGGGGSC---CCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC-C-CHHHHHHHHHHhhhhhhhcC---CCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6889887643 344 5 89999999998843222111 11224667777777765 22 3689999999999999
Q ss_pred HHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCccccc
Q 003466 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (818)
Q Consensus 477 ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~ 556 (818)
+++.+ |+ +|++. .+||+....+ ...|....
T Consensus 92 ~~~~~--------gd----------------~Vl~~-p~y~~~~~~~-~~~g~~~~------------------------ 121 (335)
T 1uu1_A 92 MMLMF--------DR----------------SVFFP-PTYSCYRIFA-KAVGAKFL------------------------ 121 (335)
T ss_dssp HHHHS--------SE----------------EEECS-SSCHHHHHHH-HHHTCEEE------------------------
T ss_pred HHHHh--------CC----------------cEEEC-CCcHHHHHHH-HHcCCeEE------------------------
Confidence 98854 22 67888 8999865322 22222100
Q ss_pred CcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCc
Q 003466 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGM 635 (818)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVI-vEPV~~g~gG~ 635 (818)
.++....+ ..|+ +. . .++++|+ ..| ++..|.
T Consensus 122 ----~v~~~~~~-----------~~d~------------------~~-----------l--~~~~~v~l~~p--~nptG~ 153 (335)
T 1uu1_A 122 ----EVPLTKDL-----------RIPE------------------VN-----------V--GEGDVVFIPNP--NNPTGH 153 (335)
T ss_dssp ----ECCCCTTS-----------CCCC------------------CC-----------C--CTTEEEEEESS--CTTTCC
T ss_pred ----EeccCCCC-----------CCCH------------------HH-----------c--CCCCEEEEeCC--CCCCCC
Confidence 00000000 0011 00 1 1345555 666 677787
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-hcccCCCCcEEEeccccc-CCccccceeecchHHHhhccC
Q 003466 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~ 713 (818)
+. |.+.+++|.++| | ++|+||++++|+. +.... .+.++....+.+++|.+| .| +++|++++++++++.+..
T Consensus 154 ~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 226 (335)
T 1uu1_A 154 VF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYNR 226 (335)
T ss_dssp CC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH
T ss_pred CC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHHH
Confidence 66 555555555555 8 8999999998753 22121 222333345669999998 78 799999999998776532
Q ss_pred C------hH--------HH----------------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHH
Q 003466 714 D------SK--------LW----------------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 714 ~------~~--------~~----------------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
. .. .+ .+.+.+.+++++. .-....|.++.+.+.. ..+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~~~~---------~~~~~~ 296 (335)
T 1uu1_A 227 VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGY-RITDSRGNFVFVFMEK---------EEKERL 296 (335)
T ss_dssp HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTC-CBCCCCSSEEEEECCT---------HHHHHH
T ss_pred hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCc-EEcCCCCeEEEEECCC---------CCHHHH
Confidence 1 00 00 0122333443332 1123446666565532 235568
Q ss_pred HHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 764 LKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
++.|.++||++.+..+.+|+++. +++|+++++++|+++
T Consensus 297 ~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 297 LEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred HHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 88999999999997789999974 367899999888653
No 178
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.52 E-value=4.5e-13 Score=150.22 Aligned_cols=222 Identities=11% Similarity=0.002 Sum_probs=124.3
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~ 474 (818)
.|||..++ ++. +|++++|+.++++.........+ ..+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 20 ~~Ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TPL-EPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CCC-CHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CCC-CHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78887653 267 99999999999876321111111 1234578899999988743 35899999999999
Q ss_pred HHHHHHHHHHhhh---cccccccccCCCccccccceEEEEEcCCCCCCc-cccccccCCCCCCCcCCCCcccCCCcccCC
Q 003466 475 EIALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (818)
Q Consensus 475 e~ALklA~r~~t~---~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t-~~als~tg~~~~~~~~~~p~~~~~~~~~~~ 550 (818)
+.+++.+.+.+.. ..| .+|++...+||+.. ......+.... .. +|.. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~g----------------d~vl~~~p~y~~~~~i~~~~~~h~s~-~~----~~~~----~--- 143 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQG----------------RTVDQISPEEGTRPHFITCTVEHDSI-RL----PLEH----L--- 143 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCCEEEEETTCCHHH-HH----HHHH----H---
T ss_pred HHHHHHHHhhhhhccccCC----------------ccccccccccccCCeEEEecCcchhH-HH----HHHH----H---
Confidence 9999987433321 122 37889999998752 11111111000 00 0000 0
Q ss_pred CcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 551 p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
....+...+.+|.... +. ..| .+.|++.+. .++++|+++++ +
T Consensus 144 ---~~~~g~~v~~v~~~~~-------~~-~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~ 185 (432)
T 3a9z_A 144 ---VEDQVAEVTFVPVSKV-------NG-QVE------------------VEDILAAVR--------PTTCLVTIMLA-N 185 (432)
T ss_dssp ---HHTTSCEEEEECCCTT-------TS-SCC------------------HHHHHHTCC--------TTEEEEECCSB-C
T ss_pred ---HHhcCcEEEEEecCcc-------cC-CcC------------------HHHHHHhcc--------CCceEEEEECc-c
Confidence 0000001111110000 00 011 245555553 35789999997 8
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcC----------CcEEEeecccCcccCCccchhcccCCCCcEEEe--cccccCCcccc
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL 698 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~g----------ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~Pl 698 (818)
+..|.+.+ +++|.++|++|| +++|+||++ ++|+... ... ...+|++++ +|.+ | ..+
T Consensus 186 nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~~--~~~--~~~~d~~~~s~~K~~--g-~~~ 253 (432)
T 3a9z_A 186 NETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRRV--DVE--DLGVDFLTIVGHKFY--G-PRI 253 (432)
T ss_dssp TTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSCC--CHH--HHCCSEEEEEGGGTT--C-CSC
T ss_pred cCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCccc--Chh--hcCCCEEEEehhHhc--C-Ccc
Confidence 88898886 789999999999 999999999 6665421 111 234788765 9976 3 348
Q ss_pred ceeecchHH
Q 003466 699 AATLATNAV 707 (818)
Q Consensus 699 sAvl~~~~i 707 (818)
|++++++++
T Consensus 254 G~~~~~~~~ 262 (432)
T 3a9z_A 254 GALYVRGVG 262 (432)
T ss_dssp EEEEETTBT
T ss_pred eEEEEcccc
Confidence 889888765
No 179
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.52 E-value=2e-13 Score=147.60 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=156.7
Q ss_pred HHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccc
Q 003466 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (818)
Q Consensus 447 eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~ 526 (818)
+|+++|+++++. +.+++++||++|++.+++.+. +.| .+|++.+.+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~-----~~g----------------~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFL-----KAG----------------DHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcchHHHHHHHH
Confidence 577888888874 478888999999999999651 122 36889999888743222111
Q ss_pred ---cCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHH
Q 003466 527 ---QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSY 603 (818)
Q Consensus 527 ---tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~ 603 (818)
.|.. .+.+| ..|. +.
T Consensus 58 ~~~~g~~------------------------------~~~~~--------------~~d~------------------~~ 75 (331)
T 1pff_A 58 LRKFGVE------------------------------VDFID--------------MAVP------------------GN 75 (331)
T ss_dssp HHHTTCE------------------------------EEEEC--------------TTST------------------TH
T ss_pred HHhcCCE------------------------------EEEeC--------------CCCH------------------HH
Confidence 1110 00001 1121 34
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cCCcEEEeecccCcccCCccchhcccCCCC
Q 003466 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (818)
Q Consensus 604 Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~gilLI~DEV~TGfGRtG~~~a~e~~gv~P 682 (818)
+++.+. +++++|+++++ ++..|.+.+ +++|.++|++ ||+++|+||+|+ .|..... ..++...
T Consensus 76 l~~~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~-~~~~~~~---~~~~~d~ 138 (331)
T 1pff_A 76 IEKHLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFA-SPILTNP---LDLGVDI 138 (331)
T ss_dssp HHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTT-HHHHCCG---GGGTCSE
T ss_pred HHHhhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCc-ccccCCh---hhcCCcE
Confidence 555443 36789999997 888898885 9999999999 999999999996 2222211 1344333
Q ss_pred cEEEecccccCCccc-cceeecch-HHHhhccC---C--hH--------H-------HH----------HHHHHHHHcCC
Q 003466 683 DIACYGKLLTGGVIP-LAATLATN-AVFDSFVG---D--SK--------L-------WD----------LELIQQISSHR 730 (818)
Q Consensus 683 DivtlgKgLggGy~P-lsAvl~~~-~i~~~l~~---~--~~--------~-------~~----------~~l~~~l~~~~ 730 (818)
.+.+++|.++++..+ .|++++++ ++++.+.. . .. . +. +.+.+.+++++
T Consensus 139 ~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (331)
T 1pff_A 139 VVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp EEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334699999874467 67888988 87665421 1 11 0 00 01112233222
Q ss_pred CeeE------------------EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---------------
Q 003466 731 TVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL--------------- 777 (818)
Q Consensus 731 ~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~--------------- 777 (818)
.+.. .++.|.++.+.+. + ...+.+.|.++||++++.
T Consensus 219 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~ 287 (331)
T 1pff_A 219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM 287 (331)
T ss_dssp TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCceeccCCCCcceeeecchhh
Confidence 1111 1356788888875 2 234667788999977532
Q ss_pred ----------------CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 778 ----------------GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 ----------------g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
.+.+|++++..+|+++|+.++++|+++
T Consensus 288 ~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 288 THAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999988754
No 180
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.52 E-value=3.5e-13 Score=147.57 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=170.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++.+|+.++++.... ...+...++.++|+++++. +.++|++||++|++.+++.+ +.+. ..
T Consensus 12 ~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~~-~~-------- 73 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEFS-AD-------- 73 (375)
T ss_dssp CHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCCC-TT--------
T ss_pred CHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-cccC-CC--------
Confidence 89999999999876321 1256778999999999973 58999999999999999976 2101 11
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
..+|++.+.+||+.... +...|.... .++.....
T Consensus 74 --------gd~Vl~~~~~~~~~~~~-~~~~g~~~~----------------------------~~~~~~~~--------- 107 (375)
T 2fnu_A 74 --------RNEIITTPISFVATANM-LLESGYTPV----------------------------FAGIKNDG--------- 107 (375)
T ss_dssp --------SCEEEECSSSCTHHHHH-HHHTTCEEE----------------------------ECCBCTTS---------
T ss_pred --------CCEEEECCCccHhHHHH-HHHCCCEEE----------------------------EeccCCCC---------
Confidence 13788888888875433 222221100 00000000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..|+ +.+++.+. .++++|++... .|.+.+ +++|.++|++||+++
T Consensus 108 --~~d~------------------~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 108 --NIDE------------------LALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLSF 151 (375)
T ss_dssp --SBCG------------------GGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCEE
T ss_pred --CCCH------------------HHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCEE
Confidence 0111 23333332 25666665543 466654 899999999999999
Q ss_pred EEeecccCcccCCccchhcccCCCCcEE--Eec--ccccCCccccceeecc--hHHHhhccC----C-------------
Q 003466 658 IFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSFVG----D------------- 714 (818)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlg--KgLggGy~PlsAvl~~--~~i~~~l~~----~------------- 714 (818)
|+||+|+ +|... ....++..+|++ +++ |.++.| +|+++++ +++++.+.. .
T Consensus 152 i~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2fnu_A 152 LSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKS 224 (375)
T ss_dssp EEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESS
T ss_pred EEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 9999995 43322 112334334655 677 999665 5777763 666543210 0
Q ss_pred -------hH---------------------HHHHHHHHHHHcCCCeeEE------EeeeeEEEEEEecCcccCCCchH-H
Q 003466 715 -------SK---------------------LWDLELIQQISSHRTVQRV------VALGTLCAIELQAAGCNAGYGSL-Y 759 (818)
Q Consensus 715 -------~~---------------------~~~~~l~~~l~~~~~v~~v------rg~Gl~~~iel~~~~~~~~~~~~-~ 759 (818)
.. ...+.+.+.+++++.+.-. ++.+.++.+.+.... . .
T Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 297 (375)
T 2fnu_A 225 IGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-------FTC 297 (375)
T ss_dssp CCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG-------GGG
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc-------cch
Confidence 00 0011234445555433211 122344455554210 1 2
Q ss_pred HHHHHHHHHhCCceEee----c----------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRP----L----------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p----~----------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+..+.+.|.++||.++. . .+.+|+.++..+|++|+++++++|+++++++
T Consensus 298 ~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 298 KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56788899999999882 1 1579999998899999999999999988765
No 181
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.51 E-value=1.2e-12 Score=146.83 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=175.9
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.+++.+|+.++++...+ . ...+...+|.++|+++++. +.++++++|++|++.+++.+ . .|
T Consensus 31 p~~~~~a~~~~~~~~~y-~---~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~l~~l-~-----~g------- 90 (424)
T 2po3_A 31 RARLYERLDRALDSQWL-S---NGGPLVREFEERVAGLAGV---RHAVATCNATAGLQLLAHAA-G-----LT------- 90 (424)
T ss_dssp HHHHHHHHHHHHHHTCC-S---SSCHHHHHHHHHHHHHHTS---SEEEEESCHHHHHHHHHHHH-T-----CC-------
T ss_pred hHHHHHHHHHHHhcCCc-c---cCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C-----CC-------
Confidence 46899999988865211 1 1246788999999999873 68999999999999999976 2 12
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
.+|++.+.+||+... ++...|.... .++.. +.+
T Consensus 91 ---------d~Vlv~~~~~~~~~~-~~~~~G~~~~----------------------------~v~~~~~~~-------- 124 (424)
T 2po3_A 91 ---------GEVIMPSMTFAATPH-ALRWIGLTPV----------------------------FADIDPDTG-------- 124 (424)
T ss_dssp ---------SEEEEESSSCTHHHH-HHHHTTCEEE----------------------------EECBCTTTS--------
T ss_pred ---------CEEEECCCccHHHHH-HHHHcCCEEE----------------------------EEecCCCcC--------
Confidence 379999999988553 3333322100 00000 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|++.+. .|.. ..+++|.++|++||++
T Consensus 125 ---~~d------------------~~~l~~~i~--------~~~~~v~~~~~----tG~~----~~l~~i~~la~~~~~~ 167 (424)
T 2po3_A 125 ---NLD------------------PDQVAAAVT--------PRTSAVVGVHL----WGRP----CAADQLRKVADEHGLR 167 (424)
T ss_dssp ---SBC------------------HHHHGGGCC--------TTEEEEEEECG----GGCC----CCHHHHHHHHHHTTCE
T ss_pred ---CcC------------------HHHHHHhhC--------cCCcEEEEECC----CCCc----CCHHHHHHHHHHcCCE
Confidence 001 144554443 25667775432 2433 3499999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecc-hHHHhhcc---CC-------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV---GD------------- 714 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l~---~~------------- 714 (818)
+|+||+++ |+...|.. .+..+|++++| |+|+|| .+|+++++ +++++.+. ..
T Consensus 168 li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~~--~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~ 240 (424)
T 2po3_A 168 LYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNAF--EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGT 240 (424)
T ss_dssp EEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCC
T ss_pred EEEECccccCCeECCee-----cccccCEEEEeCCCCCCccCC--CCeEEEeCCHHHHHHHHHHHhcCccccccccccCc
Confidence 99999998 78665542 22236888777 999884 78888888 77765432 10
Q ss_pred ----hH------H-----HH----------HHHHHHHHcCCCeeEEE---e-e--eeEEEEEEecCcccCCCchHHHHHH
Q 003466 715 ----SK------L-----WD----------LELIQQISSHRTVQRVV---A-L--GTLCAIELQAAGCNAGYGSLYAASL 763 (818)
Q Consensus 715 ----~~------~-----~~----------~~l~~~l~~~~~v~~vr---g-~--Gl~~~iel~~~~~~~~~~~~~a~~~ 763 (818)
.. + +. +.+.+.+.+.+.+.-+. + . ..++.+.+..... . .....+
T Consensus 241 ~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~~~~~l 315 (424)
T 2po3_A 241 NAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT--G---IHRDLV 315 (424)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH--S---SCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc--h---hhHHHH
Confidence 00 0 00 11223333343332221 1 1 1455566542000 0 114567
Q ss_pred HHHHHhCCceEeec-C-C------------------------EEEEECCCCChHHHHHHHHHHHHHHHHHHHHhHHHh
Q 003466 764 LKKLREDGVYMRPL-G-N------------------------VIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKL 815 (818)
Q Consensus 764 ~~~l~e~Gvlv~p~-g-~------------------------~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~~~~ 815 (818)
.+.|.++||++++. + . .+++.....+|++|+++++++|.+++++..+..+.+
T Consensus 316 ~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~~~~~ 393 (424)
T 2po3_A 316 MEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRELTARH 393 (424)
T ss_dssp HHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 88899999999762 1 1 166655688999999999999999998876654443
No 182
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.51 E-value=1.5e-12 Score=140.59 Aligned_cols=282 Identities=11% Similarity=0.100 Sum_probs=179.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALk 479 (818)
++||+.++. +.+| - +|.+.+|+.++++.+.. +..+...+|.++|+++++.. .+.++|++++++|+..+++
T Consensus 17 ~~i~l~~n~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA-V-EPRVQAAIAAAAARINR-----YPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC-C-CHHHHHHHHHHGGGTTS-----CCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC-C-CHHHHHHHHHhhhhhcc-----CCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 789998753 4666 4 79999999998876432 23456788889999988643 3589999999999998888
Q ss_pred HHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcc
Q 003466 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (818)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~ 559 (818)
.. .| ..|++.+.+|++.... +...|...
T Consensus 87 ~~-------~g----------------d~vl~~~p~~~~~~~~-~~~~g~~~---------------------------- 114 (337)
T 3p1t_A 87 EF-------SS----------------MRFVTAWPGFDGYRAR-IAVSGLRH---------------------------- 114 (337)
T ss_dssp HS-------TT----------------SEEEEESSSCSHHHHH-HTTSCCEE----------------------------
T ss_pred hc-------CC----------------CeEEEeCCCcHHHHHH-HHHcCCEE----------------------------
Confidence 54 22 2688888888874322 22222110
Q ss_pred eeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003466 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (818)
Q Consensus 560 ~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p 639 (818)
..++..+.+ ..| .+.+++. .+..++++... ++..|.+.+
T Consensus 115 ~~v~~~~~~-----------~~d------------------~~~l~~~----------~~~~~v~i~~p-~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDL-----------LLD------------------PNDLAQV----------SRDDCVVLANP-SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTS-----------SBC------------------HHHHTTC----------CTTEEEEEESS-CTTTCCCCC-
T ss_pred EEecCCCCC-----------CCC------------------HHHHHhh----------cCCCEEEEeCC-CCCCCCCCC-
Confidence 011111000 011 1223211 23356666654 788888886
Q ss_pred HHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchHHHhhccCChH--
Q 003466 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSK-- 716 (818)
Q Consensus 640 ~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~i~~~l~~~~~-- 716 (818)
.+++.++|+++++ +|+||++.+|+..+.... ...+..-.+.+++|.+| .| +.+|.+++++++++.+.....
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~ 227 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFC 227 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTT
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHhhcCCC
Confidence 6788999999997 666999998865553211 11121122448999998 77 689999999998876643211
Q ss_pred ------------------HH----------HHHHHHHHHcCCCeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHH
Q 003466 717 ------------------LW----------DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLR 768 (818)
Q Consensus 717 ------------------~~----------~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~ 768 (818)
.+ .+.+.+.+++++ +.-....|.++.+...+ ...+.+.|.
T Consensus 228 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ 295 (337)
T 3p1t_A 228 NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASSEANFVLVENAA-----------GERTLRFLR 295 (337)
T ss_dssp CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSEEEEECTT-----------THHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCCCCeEEEEEcCC-----------HHHHHHHHH
Confidence 01 112334455543 22233456666554432 134667888
Q ss_pred hCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 769 EDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 769 e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
++||++.++ .+.+|++.. +++|+++++++|++.+
T Consensus 296 ~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 296 ERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 999999984 378999875 6899999999988764
No 183
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.51 E-value=9.1e-14 Score=161.67 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=138.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCC--C--CCCcEEEeCChhHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIE 475 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~--~--~l~~v~f~~SGseA~e 475 (818)
+|++.+-.++....++. +|++++++.+++....+.....+..+...++++.+.+..+. . ..+.++++++|++|+.
T Consensus 100 ~~~~~~i~l~~g~~~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 100 KFLIDAVNYCHTELGLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred cccHhheeccCCCCCcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 44444444445677888 99999999998876544322334566777888888554221 0 0158999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccc
Q 003466 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (818)
Q Consensus 476 ~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~ 555 (818)
.+++.......-..| ..|++.+.+|++.... +...|...
T Consensus 179 ~~~~~l~~~~l~~~g----------------d~Viv~~p~~~~~~~~-~~~~g~~~------------------------ 217 (533)
T 3f6t_A 179 YAFHSLAENHLLKKG----------------DKIAINEPIFTPYLRI-PELKDYEL------------------------ 217 (533)
T ss_dssp HHHHHHHHTTSSCTT----------------CEEEEESSCCHHHHTS-GGGGGSEE------------------------
T ss_pred HHHHHhhhhhccCCc----------------CEEEEcCCCcHHHHHH-HHHcCCeE------------------------
Confidence 999963111111112 3788888888764322 22221110
Q ss_pred cCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003466 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (818)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~ 635 (818)
..++++.... ++ +. -+ .+.|++.+. .++.+|++... ++..|.
T Consensus 218 ----~~v~~~~~~~-----------~~----~~--~d--------~~~l~~~l~--------~~~k~v~l~~p-~NPtG~ 259 (533)
T 3f6t_A 218 ----VEVDLHSYEK-----------ND----WE--IE--------PNEIEKLKD--------PSIKALIVVNP-TNPTSK 259 (533)
T ss_dssp ----EEECCCEETT-----------TT----SE--EC--------HHHHHHHSC--------TTEEEEEEESS-CTTTCB
T ss_pred ----EEEEecCCcc-----------cC----CC--CC--------HHHHHHHhC--------CCCeEEEEeCC-CCCCcc
Confidence 0111110000 00 00 00 245666553 35667766543 677777
Q ss_pred ccCCHHHHHHHHHHHH-hcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchH
Q 003466 636 HMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (818)
Q Consensus 636 ~~~p~~fl~~LreLc~-~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~ 706 (818)
+. +.+.+++|.++|+ +||+++|+||++.+|...+........+....+.+|||.+| .| +++|+++++++
T Consensus 260 ~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~ 330 (533)
T 3f6t_A 260 EF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK 330 (533)
T ss_dssp CC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred cc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence 66 7888999999999 69999999999998865443332222234455779999998 67 79999999876
No 184
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.50 E-value=1.2e-13 Score=150.76 Aligned_cols=281 Identities=15% Similarity=0.049 Sum_probs=164.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
||+|.+|+.+++....+ +..+...+|.++|+++++. +..+|++||++|++.|++.+. .
T Consensus 28 ~p~v~~ai~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~-~------------- 85 (359)
T 3pj0_A 28 LTEALQNIDDNLESDIY-----GNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWA-D------------- 85 (359)
T ss_dssp HHHHTTTSCTTCBCCBT-----TBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHH-H-------------
T ss_pred CHHHHHHHHhhcccCcc-----cCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHH-h-------------
Confidence 46677777664432211 2356788999999999874 566777999999999999872 1
Q ss_pred CCccccccceEEEEEcCCCCCCcccc--c-cccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~a--l-s~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
++...+|..+..+|...... + ...|.. .+.+|...
T Consensus 86 ------~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~------------------------------~~~v~~~~------ 123 (359)
T 3pj0_A 86 ------RKENRRVAYHPLSHLEIHEQDGLKELQQIT------------------------------PLLLGTAN------ 123 (359)
T ss_dssp ------HHTCCEEEECTTCHHHHSSTTHHHHHHCCE------------------------------EEECSCTT------
T ss_pred ------cCCCcEEEEeccceeeehhcchHHHhcCce------------------------------EEecCCcC------
Confidence 11233666666666533221 1 111111 01111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
. ..| .+.+++. .+++++|++++. ++..|..++|.+++++|.++|++||
T Consensus 124 ---~-~~d------------------~~~l~~~---------~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 ---Q-LLT------------------IDDIKSL---------REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp ---S-CCC------------------HHHHHTC---------SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred ---C-CcC------------------HHHHHhc---------cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 001 1333322 346789999986 6555434558999999999999999
Q ss_pred CcEEEeecccCcc--cCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccC-------C----hH---
Q 003466 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG-------D----SK--- 716 (818)
Q Consensus 655 ilLI~DEV~TGfG--RtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~-------~----~~--- 716 (818)
++||+||++..+. ..|... ..+.-..|++ +++|+++++. . +.+++++++++.+.. . ..
T Consensus 172 ~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYGGDLISLYPYIL 247 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHH
T ss_pred CEEEEECcchhcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 9999999974221 111111 1111234666 8999988752 2 567788888876532 0 00
Q ss_pred ----H-------------HHHHHHHHHHcCCCeeEE--EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec
Q 003466 717 ----L-------------WDLELIQQISSHRTVQRV--VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 777 (818)
Q Consensus 717 ----~-------------~~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~ 777 (818)
. ..+.+.+.+++++.+.-. ...+.++-+.+... ....+..+.+.|.++||++++.
T Consensus 248 a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~GV~v~~g 321 (359)
T 3pj0_A 248 SADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS------ADEIGAILTKIQDETGVGISGY 321 (359)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC------HHHHHHHHHHHHHHHCEECCSC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc------cchhHHHHHHHHHhcCcEecCC
Confidence 0 012244556666554322 12334444445322 1123567888999999999874
Q ss_pred C-------CEEEEECC---CCChHHHHHHHHHHHHHH
Q 003466 778 G-------NVIYLMCG---PCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 778 g-------~~ir~~pp---l~~t~edId~~~~~l~~~ 804 (818)
. ..+|+... ...+.+++++++++|.++
T Consensus 322 ~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 322 LQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1 35666543 346788888888888765
No 185
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.48 E-value=2.4e-12 Score=142.48 Aligned_cols=302 Identities=13% Similarity=0.072 Sum_probs=175.5
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~A 477 (818)
.+||+.++.. .++ . +|.+.+|+.++++.. ..+....+..+...++++.+....+.. ..+.++++++|++|+..+
T Consensus 32 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGEP--DFD-T-PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 5667665422 233 2 689999999888652 111111234556667777776544321 125899999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccC
Q 003466 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (818)
Q Consensus 478 LklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~ 557 (818)
++... ..| ..|++...+|++... .+...|...
T Consensus 108 ~~~l~-----~~g----------------d~Vlv~~p~y~~~~~-~~~~~g~~~-------------------------- 139 (385)
T 1b5p_A 108 FQAIL-----DPG----------------DEVIVLSPYWVSYPE-MVRFAGGVV-------------------------- 139 (385)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTHHHH-HHHHTTCEE--------------------------
T ss_pred HHHhc-----CCC----------------CEEEEcCCCchhHHH-HHHHcCCEE--------------------------
Confidence 98761 122 368888888876432 222222110
Q ss_pred cceeecCc--chhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCC
Q 003466 558 SKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGG 634 (818)
Q Consensus 558 ~~~~v~~P--~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIv-EPV~~g~gG 634 (818)
..++.. +.+ -.| .+.+++.+. .++.+|++ .| ++..|
T Consensus 140 --~~v~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~p--~NPtG 178 (385)
T 1b5p_A 140 --VEVETLPEEGF-----------VPD------------------PERVRRAIT--------PRTKALVVNSP--NNPTG 178 (385)
T ss_dssp --EEEECCGGGTT-----------CCC------------------HHHHHTTCC--------TTEEEEEEESS--CTTTC
T ss_pred --EEeecCcccCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEeCC--CCCCC
Confidence 011110 000 001 144555443 23555554 55 56667
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcE--EEeccccc-CCccccceeecchHHHhhc
Q 003466 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLT-GGVIPLAATLATNAVFDSF 711 (818)
Q Consensus 635 ~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgKgLg-gGy~PlsAvl~~~~i~~~l 711 (818)
.+. +.+.+++|.++|++||+++|+||++..|...|.......+.-..++ .++||.+| .| +.+|++++++++++.+
T Consensus 179 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l 256 (385)
T 1b5p_A 179 AVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (385)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 655 7899999999999999999999999877444422222222111233 37999998 57 7999999998887654
Q ss_pred cCC--------hH--------HHH------H--------------HHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCC
Q 003466 712 VGD--------SK--------LWD------L--------------ELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAG 754 (818)
Q Consensus 712 ~~~--------~~--------~~~------~--------------~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~ 754 (818)
... .. .+. + .+.+.+++++ +.-.... |.++-+.+...+
T Consensus 257 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~---- 331 (385)
T 1b5p_A 257 ASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVLMDTSPIA---- 331 (385)
T ss_dssp HHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEEEECTTTC----
T ss_pred HHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecCCCC----
Confidence 310 00 111 0 1122233322 1111122 333333332110
Q ss_pred CchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 755 YGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 755 ~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
..+..+++.|.++||++.++ .+.+|+... .++++|++++++|.++++
T Consensus 332 ---~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 332 ---PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp ---SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred ---CCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 12456888888999999874 268999865 788899999998877654
No 186
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.48 E-value=7.2e-13 Score=150.79 Aligned_cols=256 Identities=14% Similarity=0.112 Sum_probs=165.5
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+++++|+++.+. +..++++||++|+..+++... +.| ..||+.+..||+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~- 165 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALV-----PAG----------------GHIVTTTDCYRK- 165 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHS-----CSS----------------CEEEEETTSCHH-
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchh-
Confidence 3477888999999999874 477888999999999999551 122 378888887776
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
+...+... .. + .|. ....+| .+|
T Consensus 166 ~~~~~~~~-~~--~----------~G~-------------~v~~v~--------------~~d----------------- 188 (445)
T 1qgn_A 166 TRIFIETI-LP--K----------MGI-------------TATVID--------------PAD----------------- 188 (445)
T ss_dssp HHHHHHHT-GG--G----------GTC-------------EEEEEC--------------SSC-----------------
T ss_pred HHHHHHHH-HH--H----------cCC-------------EEEEeC--------------CCC-----------------
Confidence 33321100 00 0 000 000011 122
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.+++.|.. +.+++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ .. ...+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~-~~-----~~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP-LN-----QKALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT-TT-----CCTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-cc-----CCccc
Confidence 2566777752 33589999997 888898875 899999999999999999999622 11 12234
Q ss_pred CCCcEEE--ecccccCCc-cccceeecchHHHhhccCChH-------------------H----HH------HHHHHHHH
Q 003466 680 CVPDIAC--YGKLLTGGV-IPLAATLATNAVFDSFVGDSK-------------------L----WD------LELIQQIS 727 (818)
Q Consensus 680 v~PDivt--lgKgLggGy-~PlsAvl~~~~i~~~l~~~~~-------------------~----~~------~~l~~~l~ 727 (818)
..+|+++ ++|.+||+. +++|++++++++++.+..... . ++ ..+.+.|+
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~ 329 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE 329 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689986 899998742 478999999988775532100 0 00 12345567
Q ss_pred cCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-------------
Q 003466 728 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP------------- 776 (818)
Q Consensus 728 ~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p------------- 776 (818)
++|.+..| +|.|.++.|++.... ..+..+...|...|+.++.
T Consensus 330 ~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-------~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~ 402 (445)
T 1qgn_A 330 AHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-------LTTAKFVDALKIPYIAPSFGGCESIVDQPAIM 402 (445)
T ss_dssp TCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCSSSCEEECHHHH
T ss_pred cCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-------HHHHHHHHhCCCceEeccCCCCceeeeccccc
Confidence 77766444 357889999986431 2355566665422332110
Q ss_pred ------------c---CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 777 ------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 777 ------------~---g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
. .+.||++.- .||+|.+++.|+++++.
T Consensus 403 ~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 403 SYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 268888865 46899999999998864
No 187
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.46 E-value=3.4e-13 Score=147.99 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc--CCcEEEeecccCcccCCccchhcccC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~--gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
+.|++.+.+ .++++|+++++ ++..|.+.+ +++|.++|++| |+++|+||+++ +|.. .+....+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 566777752 25678899997 888898876 89999999999 99999999995 4432 1222223
Q ss_pred CCCcEEEe--cccccCCccccceeecchHHHh-hc-------------------------cC------ChH---------
Q 003466 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD-SF-------------------------VG------DSK--------- 716 (818)
Q Consensus 680 v~PDivtl--gKgLggGy~PlsAvl~~~~i~~-~l-------------------------~~------~~~--------- 716 (818)
.+|++++ +|.++|+ ..+|++++++++++ .+ .. ...
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 268 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 268 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHH
Confidence 4687754 6999875 35688999887765 32 10 000
Q ss_pred ----HHH---------------HHHHHHH-HcCCCeeEEE------eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhC
Q 003466 717 ----LWD---------------LELIQQI-SSHRTVQRVV------ALGTLCAIELQAAGCNAGYGSLYAASLLKKLRED 770 (818)
Q Consensus 717 ----~~~---------------~~l~~~l-~~~~~v~~vr------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~ 770 (818)
.+. +.+.+.+ ++.+ +.-+. ..+.++.+.+.. +..+.+.|.++
T Consensus 269 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~ 336 (385)
T 2bkw_A 269 VALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ-LTSVSRYPSNMSAHGLTAVYVAD-----------PPDVIAFLKSH 336 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-CEESSCSSSTTBCSSCEEEECSC-----------HHHHHHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-ceecccCcccccCCceEEEecCC-----------HHHHHHHHHHC
Confidence 000 1122334 3332 21111 135555555421 45688889999
Q ss_pred CceEeec------CCEEEEE-CC---CCChHHHHHHHHHHHHHHHHH
Q 003466 771 GVYMRPL------GNVIYLM-CG---PCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 771 Gvlv~p~------g~~ir~~-pp---l~~t~edId~~~~~l~~~l~~ 807 (818)
||.+.+. .+.+|+. .+ ..+|++|+++++++|++++++
T Consensus 337 gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 337 GVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp TEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9999873 3689988 43 257999999999999988654
No 188
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.46 E-value=3.9e-12 Score=140.51 Aligned_cols=277 Identities=12% Similarity=0.093 Sum_probs=172.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.|++++|+.+++++.... ....+...+|.++|+++++. +..++++||++|++.|++.+ + -..
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~---~~~-------- 77 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G---VGP-------- 77 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 489999999999763211 12356788999999999974 46777889999999999976 1 111
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhhccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~ 576 (818)
..+||+...+||+.... +...|... ..++.. +.+
T Consensus 78 --------gd~Vi~~~~~~~~~~~~-~~~~g~~~----------------------------~~v~~~~~~~-------- 112 (388)
T 1b9h_A 78 --------GTEVIVPAFTFISSSQA-AQRLGAVT----------------------------VPVDVDAATY-------- 112 (388)
T ss_dssp --------TCEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC--------
T ss_pred --------cCEEEECCCccHHHHHH-HHHcCCEE----------------------------EEEecCCCcC--------
Confidence 13789999999886432 22222110 001100 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 577 ~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
..| .+.+++.+. .++++|+ |. +. .|.+.+ +++|.++|++||++
T Consensus 113 ---~~d------------------~~~l~~~i~--------~~~~~v~--~~-n~-tG~~~~----l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 113 ---NLD------------------PEAVAAAVT--------PRTKVIM--PV-HM-AGLMAD----MDALAKISADTGVP 155 (388)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEEC--CB-CG-GGCCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------cCceEEE--Ee-CC-ccCcCC----HHHHHHHHHHcCCE
Confidence 011 255666663 2566666 65 44 465554 89999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecchH-H--Hhhc---cC------------
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNA-V--FDSF---VG------------ 713 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~~~-i--~~~l---~~------------ 713 (818)
+|+||+|+ |+...|... ..++ |+.++| |+++|| .+|+++++++ + ++.+ ..
T Consensus 156 li~D~a~~~g~~~~~~~~--~~~~---~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRV--GELD---SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFH 228 (388)
T ss_dssp BCEECTTCTTCEETTEEG--GGSS---SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCC
T ss_pred EEEecchhcCCccCCeec--cccc---ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCccCcccee
Confidence 99999996 443333321 2233 666555 999886 4788888765 5 4432 10
Q ss_pred ----C----hH-----------H----------HHHHHHHHHHcCCCeeEE-------EeeeeEEEEEEecCcccCCCch
Q 003466 714 ----D----SK-----------L----------WDLELIQQISSHRTVQRV-------VALGTLCAIELQAAGCNAGYGS 757 (818)
Q Consensus 714 ----~----~~-----------~----------~~~~l~~~l~~~~~v~~v-------rg~Gl~~~iel~~~~~~~~~~~ 757 (818)
. .. . ..+.+.+.|++++.+.-+ +..+.++.+.+... ..
T Consensus 229 ~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 302 (388)
T 1b9h_A 229 KIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL------TE 302 (388)
T ss_dssp CSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC------CH
T ss_pred ecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc------Cc
Confidence 0 00 0 012234455666543222 12356677766421 01
Q ss_pred HHHHHHHHHHHhCCceEeecC----------------------------------CEEEEECCCCC-hHHHHHHHHHHHH
Q 003466 758 LYAASLLKKLREDGVYMRPLG----------------------------------NVIYLMCGPCS-SPEVCSQLLLKLY 802 (818)
Q Consensus 758 ~~a~~~~~~l~e~Gvlv~p~g----------------------------------~~ir~~ppl~~-t~edId~~~~~l~ 802 (818)
..+..+.+.|.++||.+++.- ..||+.....+ |++||++++++|.
T Consensus 303 ~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~ 382 (388)
T 1b9h_A 303 ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA 382 (388)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence 235678899999999997521 14777777778 9999999999999
Q ss_pred HHHHH
Q 003466 803 QRLEE 807 (818)
Q Consensus 803 ~~l~~ 807 (818)
+++++
T Consensus 383 ~~~~~ 387 (388)
T 1b9h_A 383 DAVAR 387 (388)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
No 189
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.44 E-value=3e-13 Score=148.78 Aligned_cols=274 Identities=14% Similarity=0.065 Sum_probs=160.8
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccc
Q 003466 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (818)
Q Consensus 413 lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~ 492 (818)
+|++ +|.+.+++.+++.+...... ....+...++.++|+++++. ++++|++||++|++.|++.+ + -..
T Consensus 7 ~~~~-~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~---~~~--- 74 (367)
T 3nyt_A 7 LKNQ-QARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-G---VGP--- 74 (367)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T---CCT---
T ss_pred cccc-ccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-C---CCC---
Confidence 4556 65555555554443211111 12467788999999999974 58999999999999999977 2 111
Q ss_pred ccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCc-chhhhh
Q 003466 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSK 571 (818)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~ 571 (818)
..+||+...+|++... ++...|.... .++.. +.+
T Consensus 75 -------------gd~Vi~~~~~~~~~~~-~~~~~G~~~~----------------------------~~~~~~~~~--- 109 (367)
T 3nyt_A 75 -------------GDEVITPGFTYVATAE-TVALLGAKPV----------------------------YVDIDPRTY--- 109 (367)
T ss_dssp -------------TCEEEEESSSCTHHHH-HHHHTTCEEE----------------------------EECBCTTTC---
T ss_pred -------------cCEEEECCCccHHHHH-HHHHcCCEEE----------------------------EEecCCccC---
Confidence 2368888888877443 3332222100 00000 000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
..|+ +.+++.+. +++++|++++. . |... .+++|+++|+
T Consensus 110 --------~~d~------------------~~l~~~i~--------~~~~~v~~~~~-~---G~~~----~~~~i~~la~ 147 (367)
T 3nyt_A 110 --------NLDP------------------QLLEAAIT--------PRTKAIIPVSL-Y---GQCA----DFDAINAIAS 147 (367)
T ss_dssp --------SBCG------------------GGTGGGCC--------TTEEEECCBCG-G---GCCC----CHHHHHHHHH
T ss_pred --------CcCH------------------HHHHHhcC--------cCCcEEEeeCC-c---cChh----hHHHHHHHHH
Confidence 0111 23333332 46788885554 2 4333 3999999999
Q ss_pred hcCCcEEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccC-Cccccceeec-chHHHhhccC---C-------
Q 003466 652 NRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSFVG---D------- 714 (818)
Q Consensus 652 ~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLgg-Gy~PlsAvl~-~~~i~~~l~~---~------- 714 (818)
+||+++|+||+|+ |+...|+ ..+..+|++++| |.+|+ |. .|++++ ++++++.+.. .
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~ 220 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYH 220 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence 9999999999995 4433333 233334999987 99998 73 677777 4666553311 0
Q ss_pred -------hH------------------------HHHHHHHHHHHcCCCe--e---EEEeeeeEEEEEEecCcccCCCchH
Q 003466 715 -------SK------------------------LWDLELIQQISSHRTV--Q---RVVALGTLCAIELQAAGCNAGYGSL 758 (818)
Q Consensus 715 -------~~------------------------~~~~~l~~~l~~~~~v--~---~vrg~Gl~~~iel~~~~~~~~~~~~ 758 (818)
.. .+.+.+.+.+++.+.. . .......++.+.+. +
T Consensus 221 ~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 290 (367)
T 3nyt_A 221 HIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD-N--------- 290 (367)
T ss_dssp ECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS-S---------
T ss_pred eeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC-C---------
Confidence 00 0011233444444321 0 01111222333322 1
Q ss_pred HHHHHHHHHHhCCceEeec-------------------------CCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 759 YAASLLKKLREDGVYMRPL-------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 759 ~a~~~~~~l~e~Gvlv~p~-------------------------g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
...+.+.|.++||.+++. ...+++......|++||+++++++.+
T Consensus 291 -~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 291 -RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp -HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 456888999999988641 13577776778899999999998854
No 190
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.43 E-value=3.1e-12 Score=142.35 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=123.6
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
.|++.+|+.++++.. +.. ...+...+|.++|+++++. +.++|++||++|++.+++.+ + ...
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~l-~---~~~-------- 71 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSKS---ENALALNSATAALHLALRVA-G---VKQ-------- 71 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 467888888887652 211 1235678999999999873 78999999999999999976 1 111
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
..+|++...+||+..... ...|... ..++....+
T Consensus 72 --------gd~Vl~~~~~~~~~~~~~-~~~g~~~----------------------------~~v~~~~~~--------- 105 (394)
T 1o69_A 72 --------DDIVLASSFTFIASVAPI-CYLKAKP----------------------------VFIDCDETY--------- 105 (394)
T ss_dssp --------TCEEEEESSSCGGGTHHH-HHTTCEE----------------------------EEECBCTTS---------
T ss_pred --------CCEEEECCCccHHHHHHH-HHcCCEE----------------------------EEEEeCCCC---------
Confidence 237899999988865332 2222110 001110000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcE
Q 003466 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (818)
Q Consensus 578 ~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilL 657 (818)
..| .+.+++.+.+ .++++++|++++. .| . ...+++|.++|++||+++
T Consensus 106 --~~d------------------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~----~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 --NID------------------VDLLKLAIKE-----CEKKPKALILTHL-YG---N----AAKMDEIVEICKENDIVL 152 (394)
T ss_dssp --SBC------------------HHHHHHHHHH-----CSSCCCEEEEECG-GG---C----CCCHHHHHHHHHHTTCEE
T ss_pred --CcC------------------HHHHHHHHhc-----ccCCceEEEEECC-CC---C----hhhHHHHHHHHHHcCCEE
Confidence 011 2556677753 1235778888885 33 2 345999999999999999
Q ss_pred EEeeccc-CcccCCccchhcccCCCCcEEEe--cccccCCccccceeecc-hHHHhhc
Q 003466 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSF 711 (818)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivtl--gKgLggGy~PlsAvl~~-~~i~~~l 711 (818)
|+||+++ |+...|.... . ++ ..|+.++ +|+++|+ -+|+++++ +++++.+
T Consensus 153 i~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKA 205 (394)
T ss_dssp EEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHH
Confidence 9999998 7655554221 1 11 3688888 6889865 48888885 7776543
No 191
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.41 E-value=3.2e-12 Score=138.81 Aligned_cols=274 Identities=10% Similarity=-0.041 Sum_probs=167.3
Q ss_pred CHHHHHHHHHhhhhcc--cccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|++.+++.+++..-. .........+...++.++++++++...-+.++++++|++|+..+++..
T Consensus 16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l-------------- 81 (362)
T 3ffr_A 16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC-------------- 81 (362)
T ss_dssp CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc--------------
Confidence 7899988888776522 111000112456778888888876422357999999999999999976
Q ss_pred cCCCccccccceEEEEEcCCCCCCccc-cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~-als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (818)
.++ +++.....+++.... .....|.. ...++.+..+
T Consensus 82 --------~~~-~~i~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 118 (362)
T 3ffr_A 82 --------VEK-KSFHCVNGSFSKRFYEFAGELGRE----------------------------AYKEEAAFGK------ 118 (362)
T ss_dssp --------CSS-EEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC------
T ss_pred --------cCC-cEEEEcCcHHHHHHHHHHHHhCCC----------------------------eEEEecCCCC------
Confidence 112 666666666652211 11111111 0011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc-
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR- 653 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~- 653 (818)
..|+ +.++ + ..++.+|+++.. ++..|.+.+ +++|.++|++|
T Consensus 119 -----~~d~------------------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~p 160 (362)
T 3ffr_A 119 -----GFYP------------------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKNK 160 (362)
T ss_dssp -----CCCG------------------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGST
T ss_pred -----CCCH------------------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhCC
Confidence 0111 1222 1 245778888886 888898886 99999999999
Q ss_pred CCcEEEeecccCcccCCccchhcccCC-CCcEEE--ecccccCCccccceeecchHHHhhccC-----------------
Q 003466 654 KIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVG----------------- 713 (818)
Q Consensus 654 gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivt--lgKgLggGy~PlsAvl~~~~i~~~l~~----------------- 713 (818)
|+++|+||+++ +|-.. .++ ..|+++ ++|.++|+ .-++.+++++++++.+..
T Consensus 161 ~~~li~D~a~~-~~~~~-------~~~~~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 231 (362)
T 3ffr_A 161 DALIFVDAVSS-LPYPK-------FDWTKIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSM 231 (362)
T ss_dssp TSEEEEECTTT-TTSSC-------CCTTSCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHH
T ss_pred CCEEEEecccc-cCCcc-------cChhHCcEEEEecccccCCC-CceEEEEECHHHHHHhhhccccCCCCcccccHHHH
Confidence 99999999985 32211 111 178875 55999853 235778888887654321
Q ss_pred ----------ChH----------HH------------------HHHHHHHHHcCCCeeEEE-----eeeeEEEEEEecCc
Q 003466 714 ----------DSK----------LW------------------DLELIQQISSHRTVQRVV-----ALGTLCAIELQAAG 750 (818)
Q Consensus 714 ----------~~~----------~~------------------~~~l~~~l~~~~~v~~vr-----g~Gl~~~iel~~~~ 750 (818)
... .+ .+.+.+.+++++.+.-+. ..+.++.+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 309 (362)
T 3ffr_A 232 LEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-- 309 (362)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--
Confidence 000 00 012234455555442221 124455555543
Q ss_pred ccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 751 CNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 751 ~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
.+..+.+.|.++||.+.++ ++.+|+.+....+++|+++++++|++.+
T Consensus 310 --------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 310 --------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp --------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1567889999999999862 4789999999899999999999998753
No 192
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.41 E-value=1.3e-11 Score=138.34 Aligned_cols=249 Identities=12% Similarity=0.078 Sum_probs=161.3
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+|.++|+++.+. +.+++++||++|+..+++... +.| ..||+.+..|++..
T Consensus 60 ~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~-----~~g----------------d~Vl~~~~~y~~~~ 115 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTIL-----KAG----------------DHLISDECLYGCTH 115 (404)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESCCCHHHH
T ss_pred cChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchhHH
Confidence 467778999999999874 588899999999999998651 222 36888888777632
Q ss_pred cc---cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHH
Q 003466 521 LG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (818)
Q Consensus 521 ~~---als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~ 597 (818)
.. .+...|.. .+.+| .+|.
T Consensus 116 ~~~~~~~~~~g~~------------------------------~~~v~--------------~~d~-------------- 137 (404)
T 1e5e_A 116 ALFEHALTKFGIQ------------------------------VDFIN--------------TAIP-------------- 137 (404)
T ss_dssp HHHHTHHHHTTCE------------------------------EEEEC--------------TTST--------------
T ss_pred HHHHHHHHHcCCE------------------------------EEEEC--------------CCCH--------------
Confidence 10 11111110 01111 1121
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cCCcEEEeecccCcccCCccchhc
Q 003466 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 598 ~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
+.+++.+. .++++|+++.. ++..|.+.+ +++|.++|++ ||+++|+||+++.+.. ....
T Consensus 138 ----~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~--- 196 (404)
T 1e5e_A 138 ----GEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV--- 196 (404)
T ss_dssp ----THHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG---
T ss_pred ----HHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc---
Confidence 34555553 36789999987 888898875 9999999999 9999999999986632 2221
Q ss_pred ccCCCCcEE--EecccccCCcccc-ceeecchHHHh-hccC---C---hH-----------H---H---H-------HHH
Q 003466 677 LLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVG---D---SK-----------L---W---D-------LEL 722 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~-~l~~---~---~~-----------~---~---~-------~~l 722 (818)
.+| .|++ +++|.+++.-.++ |++++++++++ .+.. . .. . + . +.+
T Consensus 197 ~~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 274 (404)
T 1e5e_A 197 DFG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKV 274 (404)
T ss_dssp GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 234 5665 7999998644687 89999988776 4321 1 10 0 0 0 112
Q ss_pred HHHHHcCCCeeE------------------EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-------
Q 003466 723 IQQISSHRTVQR------------------VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------- 777 (818)
Q Consensus 723 ~~~l~~~~~v~~------------------vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------- 777 (818)
.+.+++++.+.. .++.|.++.+++... ...+.+.+.+.||++...
T Consensus 275 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~~i~~~~~s~G~~~s 344 (404)
T 1e5e_A 275 AEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG----------FEGAKKLLDNLKLITLAVSLGGCES 344 (404)
T ss_dssp HHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH----------HHHHHHHHHTCSSSEESSCCCSSSC
T ss_pred HHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC----------HHHHHHHHHhCCCceeccCCCCcce
Confidence 233445543322 234588888877421 123445566778865431
Q ss_pred ------------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 778 ------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 778 ------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
.+.+|+++.. |+++++++.|+++++.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 345 LIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp EEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred eeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 2689999887 88999999999888654
No 193
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.41 E-value=1.3e-11 Score=138.24 Aligned_cols=283 Identities=15% Similarity=0.069 Sum_probs=172.9
Q ss_pred CHHHHHHHHHhhhhcccc--cCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccc
Q 003466 418 QIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~--~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~ 495 (818)
+|++++|+.+++++.... ....+..+...+++++|+++++. +.++|++||++|++.|++.+ + -..|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~---~~~g----- 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-G---IGEG----- 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-T---CCTT-----
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-C---CCCc-----
Confidence 689999999999764221 11123355688999999999874 57888999999999999976 1 0111
Q ss_pred cCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-hhhhhccc
Q 003466 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (818)
Q Consensus 496 ~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~ 574 (818)
.+||+...+||+.... +...|... ..++... .+
T Consensus 83 -----------d~Vl~~~~~~~~~~~~-~~~~g~~~----------------------------~~~~~~~~~~------ 116 (418)
T 2c81_A 83 -----------DEVIVPSLTWIATATA-VLNVNALP----------------------------VFVDVEADTY------ 116 (418)
T ss_dssp -----------CEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC------
T ss_pred -----------CEEEECCCccHhHHHH-HHHcCCEE----------------------------EEEecCCCCC------
Confidence 3789999998876533 22222110 0011000 00
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 575 ~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
..| .+.+++.+. .++++|++... .|... .+++|.++|++||
T Consensus 117 -----~~d------------------~~~l~~~i~--------~~~~~v~~~~~----~G~~~----~~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 -----CID------------------PQLIKSAIT--------DKTKAIIPVHL----FGSMA----NMDEINEIAQEHN 157 (418)
T ss_dssp -----SBC------------------HHHHGGGCC--------TTEEEECCBCC----TTCCC----CHHHHHHHHHHTT
T ss_pred -----CcC------------------HHHHHHhhC--------CCCeEEEEeCC----cCCcc----cHHHHHHHHHHCC
Confidence 001 144554443 35778887653 34433 3999999999999
Q ss_pred CcEEEeecccCccc-CCccchhcccCCCCcEEE--e--cccccCCccccceeecc-hHHHhhcc----------------
Q 003466 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIAC--Y--GKLLTGGVIPLAATLAT-NAVFDSFV---------------- 712 (818)
Q Consensus 655 ilLI~DEV~TGfGR-tG~~~a~e~~gv~PDivt--l--gKgLggGy~PlsAvl~~-~~i~~~l~---------------- 712 (818)
+++|+||+++.+.+ .|. ..+..+|+++ | +|.+++| .+|+++++ +++++.+.
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999976542 232 2233346654 4 9999886 68888884 66544221
Q ss_pred ----C--C----------------hHH-------H----------HHHHHHHHHcCCCeeEE-Eeee------eEEEEEE
Q 003466 713 ----G--D----------------SKL-------W----------DLELIQQISSHRTVQRV-VALG------TLCAIEL 746 (818)
Q Consensus 713 ----~--~----------------~~~-------~----------~~~l~~~l~~~~~v~~v-rg~G------l~~~iel 746 (818)
. . ..+ + .+.+.+.+.+.+.+.-. ...| .++.+.+
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~ 310 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRF 310 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEE
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEE
Confidence 0 0 000 0 01223444555443221 1111 2444666
Q ss_pred ecCcccCCCchHHHHHHHHHHHhC-Cce---Eeec-------------------------------C----------CEE
Q 003466 747 QAAGCNAGYGSLYAASLLKKLRED-GVY---MRPL-------------------------------G----------NVI 781 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~-Gvl---v~p~-------------------------------g----------~~i 781 (818)
.... .. ......+.+.|.++ ||. +++. + ..+
T Consensus 311 ~~~~-~~---~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (418)
T 2c81_A 311 DPVK-FG---GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSI 386 (418)
T ss_dssp CGGG-TT---TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEE
T ss_pred cccc-cc---ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEE
Confidence 4210 00 01245788999999 999 7642 1 479
Q ss_pred EEECCCCC-hHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCS-SPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 782 r~~ppl~~-t~edId~~~~~l~~~l~~l 808 (818)
|+.++..+ |++||++++++|+++++++
T Consensus 387 rl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 387 VIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp EEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999887653
No 194
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.41 E-value=4.3e-12 Score=141.79 Aligned_cols=254 Identities=10% Similarity=0.083 Sum_probs=162.1
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
..++...+|.++|+++.+. +.+++++||++|+..|++ .. +.| ..||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~-----~~g----------------d~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SL-----PQG----------------SHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TS-----CSS----------------CEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-Hc-----CCC----------------CEEEEeCCCchHH
Confidence 3467788999999999874 478888999999999999 41 122 3788888888873
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
. ..+... .. ..|.. .+.+| . .
T Consensus 107 ~-~~~~~~-~~------------~~G~~-------------v~~v~-----------------~-----------~---- 127 (393)
T 1n8p_A 107 H-RYFTKV-AN------------AHGVE-------------TSFTN-----------------D-----------L---- 127 (393)
T ss_dssp H-HHHHHT-ST------------TTCSC-------------CEEES-----------------S-----------H----
T ss_pred H-HHHHHH-HH------------HcCcE-------------EEEeC-----------------C-----------C----
Confidence 2 211100 00 00000 00001 0 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhc----CCcEEEeecccCcccCCccchh
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~----gilLI~DEV~TGfGRtG~~~a~ 675 (818)
. +.+++.+. .++++|++|.+ ++..|.+.+ +++|.++|++| |+++|+||+|+++.+ +...
T Consensus 128 d-~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~-- 190 (393)
T 1n8p_A 128 L-NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPL-- 190 (393)
T ss_dssp H-HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGG--
T ss_pred h-HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHH--
Confidence 1 34555553 36789999997 899998885 99999999999 999999999986644 2322
Q ss_pred cccCCCCcEE--EecccccCCcccc-ceeecc-hHHHhhccCC-----h---H---------------HHH------HHH
Q 003466 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFVGD-----S---K---------------LWD------LEL 722 (818)
Q Consensus 676 e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~-~~i~~~l~~~-----~---~---------------~~~------~~l 722 (818)
.+| +|++ +++|.+|+..+++ |+++++ +++++.+... . . .++ ..+
T Consensus 191 -~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 267 (393)
T 1n8p_A 191 -NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKI 267 (393)
T ss_dssp -GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 223 7877 7999999643678 777775 7777655321 0 0 000 123
Q ss_pred HHHHHcCCC-eeEE------------------Ee-e-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe------
Q 003466 723 IQQISSHRT-VQRV------------------VA-L-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR------ 775 (818)
Q Consensus 723 ~~~l~~~~~-v~~v------------------rg-~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~------ 775 (818)
.+.+++++. +..+ ++ . |.++.|++.... ..+..+...|...|+.+.
T Consensus 268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-------~~~~~~l~~l~~~~~~~s~G~~~s 340 (393)
T 1n8p_A 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-------EAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-------HHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-------HHHHHHHhhCCcceECCCCCCCcc
Confidence 344555665 5443 23 5 889999986321 335556665543332211
Q ss_pred ----e---------------c---CCEEEEECCCCChHHHHHHHHHHHHHH
Q 003466 776 ----P---------------L---GNVIYLMCGPCSSPEVCSQLLLKLYQR 804 (818)
Q Consensus 776 ----p---------------~---g~~ir~~ppl~~t~edId~~~~~l~~~ 804 (818)
| . .+.||++.....++++|+.+.++|+++
T Consensus 341 ~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 341 LLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1 1 268999999999999999988888654
No 195
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.40 E-value=2.6e-12 Score=146.94 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=158.8
Q ss_pred CChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
.++...+++++|+++.+. +.++++++|++|+..+++++ +.| ..||+.+..||+..
T Consensus 131 g~~~~~~l~~~la~~~g~---~~~i~~~sGt~al~~~l~~~------~~G----------------d~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDKA---DRAFCFTSGMAALSAVTHLI------KNG----------------EEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CTT----------------CEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CCC----------------CEEEEECCCchhHH
Confidence 456788999999998873 58888999999998777632 122 37888888888742
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~ 600 (818)
..+... .. . .| ...+.+| .+|
T Consensus 186 -~~~~~~-~~---~---------~G-------------~~v~~v~--------------~~d------------------ 206 (464)
T 1ibj_A 186 -RLLSQV-VP---R---------SG-------------VVVKRVN--------------TTK------------------ 206 (464)
T ss_dssp -HHHHHT-SG---G---------GT-------------CEEEEEC--------------TTS------------------
T ss_pred -HHHHHH-HH---H---------cC-------------CEEEEeC--------------CCC------------------
Confidence 111000 00 0 00 0001111 112
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC
Q 003466 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (818)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv 680 (818)
.+.+++.+. .++++|++|.. ++..|.+.+ +++|.++|++||+++|+||+++. |..+....+
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~~-- 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLEL-- 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGGT--
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhhc--
Confidence 255666663 36889999997 888888885 99999999999999999999952 222111113
Q ss_pred CCcEE--EecccccC--Cccccceeecch-HHHhhccC------Ch--H--------H-------HH------HHHHHHH
Q 003466 681 VPDIA--CYGKLLTG--GVIPLAATLATN-AVFDSFVG------DS--K--------L-------WD------LELIQQI 726 (818)
Q Consensus 681 ~PDiv--tlgKgLgg--Gy~PlsAvl~~~-~i~~~l~~------~~--~--------~-------~~------~~l~~~l 726 (818)
.+|++ +++|.++| | +++|++++++ ++++.+.. .. . . ++ ..+.+.+
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l 346 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYL 346 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 46877 59999987 6 6889999984 77654421 10 0 0 11 1122233
Q ss_pred HcCCCee------------------EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----------
Q 003466 727 SSHRTVQ------------------RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL----------- 777 (818)
Q Consensus 727 ~~~~~v~------------------~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~----------- 777 (818)
++++.+. +.++.|.++.+++... ..+..+.+.|...|+.++.+
T Consensus 347 ~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~ 418 (464)
T 1ibj_A 347 SSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV--------ALSKHLVETTKYFSIAVSFGSVKSLISMPCF 418 (464)
T ss_dssp HTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH--------HHHHHHHHHCSSSEECSCCCSSSCEEECTTT
T ss_pred HhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH--------HHHHHHHHhcCcceEeecCCCCceeeecccc
Confidence 3332111 1235677888887321 23445777777667665432
Q ss_pred -----------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 778 -----------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 -----------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+|+.+++ ||++++++.|++++++
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 419 MSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp TTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred cccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 2579999887 8999999999998764
No 196
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.39 E-value=2.2e-11 Score=140.80 Aligned_cols=290 Identities=13% Similarity=0.066 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh----hcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 443 ~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t----~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
+...++.++|++++|.+ .+.++|+++|+|||..|++.+ |.++ +..|. . ...+..|++. ...|.
T Consensus 148 ~le~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~-~---------~~~~~~vl~s-~~~h~ 214 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGL-R---------TLPPLALFTS-KECHY 214 (515)
T ss_dssp HHHHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCG-G---------GSCCEEEEEE-TTSCT
T ss_pred HHHHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCc-c---------ccCCeEEEEC-CCccH
Confidence 34456677788888743 358999999999999999998 5432 11121 0 0012244444 44577
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
+...++...|... .....++....+ ..|
T Consensus 215 s~~~~~~~~g~g~-------------------------~~v~~v~~~~~~-----------~~d---------------- 242 (515)
T 2jis_A 215 SIQKGAAFLGLGT-------------------------DSVRVVKADERG-----------KMV---------------- 242 (515)
T ss_dssp HHHHHHHHTTSCG-------------------------GGEEEECBCTTS-----------CBC----------------
T ss_pred HHHHHHHHcCCCC-------------------------CcEEEEecCCCC-----------cCC----------------
Confidence 6655554443210 000111111000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhccc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.|++.|.+.. ..+.++++|++... .+..|.+.+ +++|.++|++||++||+|++++|+......+.+...
T Consensus 243 --~~~L~~~i~~~~--~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~ 313 (515)
T 2jis_A 243 --PEDLERQIGMAE--AEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLD 313 (515)
T ss_dssp --HHHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGT
T ss_pred --HHHHHHHHHHHH--hCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcC
Confidence 145555554200 11336788888876 777888776 999999999999999999999888766655554455
Q ss_pred CC-CCcEEEe--cccccCCccccceeecchH--HHhh--------ccCC----------------------hH-------
Q 003466 679 GC-VPDIACY--GKLLTGGVIPLAATLATNA--VFDS--------FVGD----------------------SK------- 716 (818)
Q Consensus 679 gv-~PDivtl--gKgLggGy~PlsAvl~~~~--i~~~--------l~~~----------------------~~------- 716 (818)
|+ .+|++++ .|.++++ +++|+++++++ +++. +... ..
T Consensus 314 g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~ 392 (515)
T 2jis_A 314 GIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWK 392 (515)
T ss_dssp TGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHH
T ss_pred CCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHH
Confidence 66 7899988 9999877 47899998866 5432 1000 00
Q ss_pred ---------------HHHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCC-CchH-------HHHHHHHHHHhCCc
Q 003466 717 ---------------LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAG-YGSL-------YAASLLKKLREDGV 772 (818)
Q Consensus 717 ---------------~~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~-~~~~-------~a~~~~~~l~e~Gv 772 (818)
.+.+.+.+.+++.+.+.-+. .....+.+.+.+..-... .... .+..+.+.|.++|+
T Consensus 393 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~ 472 (515)
T 2jis_A 393 AQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGS 472 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 00112344555555432211 112334444432100000 0011 12347788899997
Q ss_pred eEee----cC--CEEEEEC-CCCChHHHHHHHHHHHHHHHHH
Q 003466 773 YMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 773 lv~p----~g--~~ir~~p-pl~~t~edId~~~~~l~~~l~~ 807 (818)
+... .+ +.+|+++ +..+|++||++++++|++++++
T Consensus 473 ~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 473 MMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 6532 22 5899999 8899999999999999887643
No 197
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.38 E-value=2.8e-12 Score=143.04 Aligned_cols=217 Identities=13% Similarity=0.045 Sum_probs=127.1
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhcc-CCCC----CCcEE--EeCChhH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKGW----ASRAY--FSDNGST 472 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~-~~~~----l~~v~--f~~SGse 472 (818)
.+||+.+|. +++...+|.+.++++++.....+. + ....-..+|.+.+++++ +... -+++. .+++|++
T Consensus 42 ~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~-y--~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDADQPFVLECVKQATLGTNMD-Y--APVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCC-C--CCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred CceeeeeeE---EECCCCCEeecHHHHhcCcccccc-C--CCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 577877633 333322788999998884322111 0 01111234555555543 2110 14564 4899999
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCc
Q 003466 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (818)
Q Consensus 473 A~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~ 552 (818)
|++.+..++ +.+.+ .| .+|++.+.+|++.. ..+...|....
T Consensus 116 a~~~~~~~~-~~~~~-~g----------------d~Vlv~~p~y~~~~-~~~~~~g~~~~-------------------- 156 (409)
T 4eu1_A 116 ALRIGGDLL-NRFVA-NC----------------NRIYGPDVGYPNHE-SIFAKAGMELT-------------------- 156 (409)
T ss_dssp HHHHHHHHG-GGTSS-SC----------------CEEEEESSCCTHHH-HHHHHTTCEEE--------------------
T ss_pred HHHHHHHHH-HHhcC-CC----------------CEEEEeCCCcHhHH-HHHHHcCCeEE--------------------
Confidence 999988876 43322 12 37888888887643 22222222100
Q ss_pred ccccCcceeecC--cchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 003466 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (818)
Q Consensus 553 ~~~~~~~~~v~~--P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~ 630 (818)
.+++ ++.+ ..| .+.+++.+++ .+.+.+.+++... +
T Consensus 157 --------~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-----~~~~~~~i~~~~p-~ 193 (409)
T 4eu1_A 157 --------PYSYYDPATK-----------GLN------------------LAGMLECLDK-----APEGSVILVHACA-H 193 (409)
T ss_dssp --------EECCEETTTT-----------EEC------------------HHHHHHHHHH-----SCTTCEEEEESSS-C
T ss_pred --------EEEeecCcCC-----------cCc------------------HHHHHHHHHh-----CCCCcEEEEECCC-C
Confidence 0111 0000 011 2567777753 2334455554432 6
Q ss_pred cCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchh-cccCCCCcEE---Eeccccc-CCcccccee-
Q 003466 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTA-DLLGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (818)
Q Consensus 631 g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~-e~~gv~PDiv---tlgKgLg-gGy~PlsAv- 701 (818)
+..|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .... ...+..++++ ++||.+| .| +++|++
T Consensus 194 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 7777666 788999999999999999999999999876662 2222 2235566654 8999998 67 699984
Q ss_pred --ecchH
Q 003466 702 --LATNA 706 (818)
Q Consensus 702 --l~~~~ 706 (818)
+++++
T Consensus 272 ~v~~~~~ 278 (409)
T 4eu1_A 272 ISTASAE 278 (409)
T ss_dssp EECSSHH
T ss_pred EEeCCHH
Confidence 66676
No 198
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.36 E-value=3.3e-11 Score=135.09 Aligned_cols=253 Identities=11% Similarity=0.045 Sum_probs=157.9
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|.++|+++.+. +..++++||++|+..+++ .. +.| ..||+.+..||+.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~-----~~g----------------d~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LL-----KAG----------------DQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TS-----CTT----------------CEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-Hh-----CCC----------------CEEEEeCCCcchH
Confidence 3467788999999999874 467778899999999888 41 122 3789999988874
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
......+. . + .| ...+.+| .+|
T Consensus 119 ~~~~~~~~--~--~----------~G-------------~~v~~v~--------------~~d----------------- 140 (403)
T 3cog_A 119 NRYFRQVA--S--E----------FG-------------LKISFVD--------------CSK----------------- 140 (403)
T ss_dssp HHHHHHTG--G--G----------GT-------------CEEEEEC--------------TTS-----------------
T ss_pred HHHHHHHH--H--H----------cC-------------CEEEEEC--------------CCC-----------------
Confidence 31110000 0 0 00 0000011 112
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcC-CcEEEeecccCcccCCccchhccc
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g-ilLI~DEV~TGfGRtG~~~a~e~~ 678 (818)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++|| +++|+||+++++ ..+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~-~~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSP-YFQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCT-TTCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccc-ccCCc-----c
Confidence 145666663 36789999997 888898885 999999999999 999999999764 22221 2
Q ss_pred CCCCcEE--EecccccC-Cccccceeecc-hHHHhhccCC--------hH---------------HHH------HHHHHH
Q 003466 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGD--------SK---------------LWD------LELIQQ 725 (818)
Q Consensus 679 gv~PDiv--tlgKgLgg-Gy~PlsAvl~~-~~i~~~l~~~--------~~---------------~~~------~~l~~~ 725 (818)
+..+|++ +++|.++| |-..+|+++++ +++++.+... .. .++ ..+.+.
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~ 280 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQF 280 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3457887 79999986 32467888885 6776654321 00 000 012233
Q ss_pred HHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEee-----------
Q 003466 726 ISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------- 776 (818)
Q Consensus 726 l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------- 776 (818)
+++++.+.++ ++.|.++.+++... .....+.|.+.|++.+.
T Consensus 281 l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----------~~~~~~~l~~~~i~~~~~s~G~~~sl~~ 350 (403)
T 3cog_A 281 LESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----------LQHAEIFLKNLKLFTLAESLGGFESLAE 350 (403)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----------HHHHHHHHHHCSSSEECSCCSSSSCEEE
T ss_pred HhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----------HHHHHHHHHhCCcceEccCCCCcceeee
Confidence 3444433332 34588888887432 12234455567876542
Q ss_pred ------------------c--CCEEEEECCCCChHHHHHHHHHHHHHHH
Q 003466 777 ------------------L--GNVIYLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 777 ------------------~--g~~ir~~ppl~~t~edId~~~~~l~~~l 805 (818)
+ .+.+|+++.+..++++|+.+.++|++++
T Consensus 351 ~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 351 LPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp CTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred cccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 0 3689999999888888887777776543
No 199
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.35 E-value=1.7e-11 Score=138.97 Aligned_cols=263 Identities=8% Similarity=-0.023 Sum_probs=160.5
Q ss_pred CHHHHHHHHHhhhhccc---ccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---VMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.++.....+ .....+......+++++++++++. +...+ ++||++|++.+++.. -+.|
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al-----~~~G- 107 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGI-----LRPG- 107 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTT-----CCTT-
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHh-----CCCC-
Confidence 78999999986433222 122233456788999999999874 34433 569999999999754 1222
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..||+.++..|+.+...+.+++. ++.. ....| ...+.+|...
T Consensus 108 ---------------d~Vl~~~~~~y~~~~~~~~l~g~--~~~~-----~~~~G-------------~~~~~v~~~~--- 149 (431)
T 3ht4_A 108 ---------------DELLYITGKPYDTLEEIVGVRGK--GVGS-----FKEYN-------------IGYNAVPLTE--- 149 (431)
T ss_dssp ---------------CEEEECSSSCCTTHHHHTTSSSC--SSSC-----SGGGT-------------CEEEECCBCT---
T ss_pred ---------------CEEEEeCCCCchhHHHHHhhccc--ccch-----HHHcC-------------CEEEEeCCCC---
Confidence 36888887888888877777654 1111 01001 1111111100
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
+. ..| .+.+++.+. .++.+|++|+..++..|.. .+...+++|.++|+
T Consensus 150 -----~~-~~d------------------~e~l~~~l~--------~~tk~V~i~~sp~np~~~~-~~~~~l~~i~~la~ 196 (431)
T 3ht4_A 150 -----GG-LVD------------------FEAVAAAIH--------SNTKMIGIQRSKGYATRPS-FTISQIKEMIAFVK 196 (431)
T ss_dssp -----TS-SBC------------------HHHHHHHCC--------TTEEEEEEECSCTTSSSCC-CCHHHHHHHHHHHH
T ss_pred -----CC-CcC------------------HHHHHhhcC--------CCCeEEEEECCCCCCCCCc-CCHHHHHHHHHHHH
Confidence 00 011 256666664 3688999995224444443 37888999999999
Q ss_pred h--cCCcEEEeecccCcccCCccchhcccCCCCcEEEecccccCCc-cccceeecchHHHhhccC------C-----h--
Q 003466 652 N--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFVG------D-----S-- 715 (818)
Q Consensus 652 ~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLggGy-~PlsAvl~~~~i~~~l~~------~-----~-- 715 (818)
+ ||+++|+||+++.+...+... .+|+...+.+++|.||||+ .+.|++++++++++.+.. . .
T Consensus 197 ~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~ 273 (431)
T 3ht4_A 197 EIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASL 273 (431)
T ss_dssp HHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCC
T ss_pred hhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccH
Confidence 9 999999999998775444422 2344333447999999865 456778888888776532 0 0
Q ss_pred ---H-----------HHH------HHHHHHHHcCCC-e---eEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCC
Q 003466 716 ---K-----------LWD------LELIQQISSHRT-V---QRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDG 771 (818)
Q Consensus 716 ---~-----------~~~------~~l~~~l~~~~~-v---~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G 771 (818)
. ... ..+.+.+++++. + ...++.++++++.+.+. +.+..+++.|.+..
T Consensus 274 ~~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~--------~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 274 YSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK--------DRMIAFCQAIQYAS 345 (431)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH--------HHHHHHHHHHHHTS
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH--------HHHHHHHHHHHhcC
Confidence 0 000 112333444432 1 22356677888888643 56788999998863
No 200
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.34 E-value=9.2e-11 Score=129.84 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=120.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.|++.+ +++. ..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~~~~-~~~~------ 77 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-FFTK-KPRL------ 77 (390)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TSSS-SCSC------
T ss_pred CHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-Hhhh-hcCC------
Confidence 68999999999876432 2367788999999999974 57899999999999999976 3211 0010
Q ss_pred CCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~ 577 (818)
....+||+...+||+.... +...|... ..++....
T Consensus 78 ------~~g~~Vi~~~~~~~~~~~~-~~~~g~~~----------------------------~~~~~~~~---------- 112 (390)
T 3b8x_A 78 ------KKGDEIIVPAVSWSTTYYP-LQQYGLRV----------------------------KFVDIDIN---------- 112 (390)
T ss_dssp ------CTTCEEEEESSSCHHHHHH-HHHTTCEE----------------------------EEECBCTT----------
T ss_pred ------CCcCEEEECCCCcHHHHHH-HHHcCCEE----------------------------EEEecCcc----------
Confidence 1124789999999886543 22222110 00000000
Q ss_pred cccc-CccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCc
Q 003466 578 ITFC-SRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (818)
Q Consensus 578 ~~~n-d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gil 656 (818)
+++ | .+.+++.+. .++++|++... . |.. ..+++|.++|++||++
T Consensus 113 -~~~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~---g~~----~~~~~i~~l~~~~~~~ 157 (390)
T 3b8x_A 113 -TLNID------------------IESLKEAVT--------DSTKAILTVNL-L---GNP----NNFDEINKIIGGRDII 157 (390)
T ss_dssp -TCSBC------------------HHHHHHHCC--------TTEEEEEEECG-G---GCC----CCHHHHHHHHTTSCCE
T ss_pred -ccCcC------------------HHHHHHHhC--------cCCeEEEEECC-c---cCh----hhHHHHHHHHHHcCCE
Confidence 000 1 255666664 25667776432 2 222 3499999999999999
Q ss_pred EEEeeccc-CcccCCccchhcccCCCCcEEEecccccCCcc--ccceeecch-HHH
Q 003466 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVF 708 (818)
Q Consensus 657 LI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlgKgLggGy~--PlsAvl~~~-~i~ 708 (818)
+|+||+|+ |.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.
T Consensus 158 li~D~a~~~g~~-----~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~ 208 (390)
T 3b8x_A 158 LLEDNCESMGAT-----FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIY 208 (390)
T ss_dssp EEEECTTCTTCE-----ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHH
T ss_pred EEEECcCcccCE-----ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHH
Confidence 99999996 332 223567888999998876554321 245666665 553
No 201
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.34 E-value=9.5e-12 Score=143.43 Aligned_cols=312 Identities=12% Similarity=0.039 Sum_probs=177.0
Q ss_pred CHHHHHHHHHhhhhccc---c--cCCCCCChhHHHHHHHHHhccCCC-CCCcEEEeCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---V--MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~--~~~~~~~~~~~eLae~L~~~~~~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
.+++++++.+++..... . ....+..+...++++.+.+..+.+ ..+.++++++|++|+..+++... ...|
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~g- 182 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNEK- 182 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CSTT-
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCCC-
Confidence 77888888888877521 1 112233456667777776543311 13689999999999999999761 0122
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..|++.+.+|++.. .++...|.... .+++...-
T Consensus 183 ---------------d~Vlv~~p~y~~~~-~~~~~~g~~~~----------------------------~~~~~~~~--- 215 (500)
T 3tcm_A 183 ---------------DGILVPIPQYPLYS-ASIALHGGALV----------------------------PYYLNEST--- 215 (500)
T ss_dssp ---------------EEEEEEESCCTHHH-HHHHHTTCEEE----------------------------EEECBTTT---
T ss_pred ---------------CEEEEeCCCcHhHH-HHHHHcCCEEE----------------------------EEeccccc---
Confidence 36888888887644 33333332110 01100000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~ 651 (818)
+ -..| .+.|++.|.... ....++.+|++... ++..|.+. +.+.+++|.++|+
T Consensus 216 -----~-~~~d------------------~~~l~~~l~~~~--~~~~~~k~ivl~~p-~NPtG~~~-s~~~l~~i~~la~ 267 (500)
T 3tcm_A 216 -----G-WGLE------------------TSDVKKQLEDAR--SRGINVRALVVINP-GNPTGQVL-AEENQYDIVKFCK 267 (500)
T ss_dssp -----T-SBCC------------------HHHHHHHHHHHH--HTTCEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred -----C-CCCC------------------HHHHHHHHHHHH--hcCCCceEEEEECC-CCCCcccC-CHHHHHHHHHHHH
Confidence 0 0111 145555554210 11235666666543 67777766 7888999999999
Q ss_pred hcCCcEEEeecccCcccCC--ccchh----cccCC-CC--c-EE--Eecccc-c-CCccccceeec---chHHHhhccCC
Q 003466 652 NRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VP--D-IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFVGD 714 (818)
Q Consensus 652 ~~gilLI~DEV~TGfGRtG--~~~a~----e~~gv-~P--D-iv--tlgKgL-g-gGy~PlsAvl~---~~~i~~~l~~~ 714 (818)
+||+++|+||++.++...+ .+..+ ..++. .. + ++ ++||++ | .| +.+|++++ ++++++.+...
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHH
Confidence 9999999999998753322 12111 12332 22 2 33 789999 4 36 68888887 78776654211
Q ss_pred hH---------------H-------------HHH--------------HHHHHHHcCCCeeEEEeeeeEEEE-EEecCcc
Q 003466 715 SK---------------L-------------WDL--------------ELIQQISSHRTVQRVVALGTLCAI-ELQAAGC 751 (818)
Q Consensus 715 ~~---------------~-------------~~~--------------~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~ 751 (818)
.. . +.+ .+.+.+++++.+.-+...|.++.+ .+..+..
T Consensus 347 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~ 426 (500)
T 3tcm_A 347 ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQK 426 (500)
T ss_dssp HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHH
T ss_pred HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchh
Confidence 00 1 111 123345555555444444444433 2221100
Q ss_pred cC----CCchHHHHHH-HHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHHhH
Q 003466 752 NA----GYGSLYAASL-LKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVE 812 (818)
Q Consensus 752 ~~----~~~~~~a~~~-~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~~ 812 (818)
.. .........+ .+.|.++||++.|+ .+.+|++.. +++++|++++++|.++++++.+.+
T Consensus 427 ~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 427 AIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000001223 34556789999973 146898887 889999999999999998876543
No 202
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.33 E-value=7.7e-12 Score=141.90 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~ 678 (818)
+.+++.+.. .+.+...+++... ++..|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 190 e~l~~~l~~-----~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 262 (448)
T 3meb_A 190 SNTKKDIQS-----APEKSIFLFHACA-HNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMF 262 (448)
T ss_dssp HHHHHHHHH-----SCTTCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHH
Confidence 556667763 2334455555443 77778765 788999999999999999999999999976652 2222222
Q ss_pred -CCCCc---EEEeccccc-CCcccccee--ec
Q 003466 679 -GCVPD---IACYGKLLT-GGVIPLAAT--LA 703 (818)
Q Consensus 679 -gv~PD---ivtlgKgLg-gGy~PlsAv--l~ 703 (818)
+..++ +.++||.+| .| +++|++ ++
T Consensus 263 ~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~ 293 (448)
T 3meb_A 263 VDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVH 293 (448)
T ss_dssp HHTTCCEEEEEECTTTSCCGG-GCCEEEEEEC
T ss_pred hhcCCcEEEEecccccCCCcc-ccceeeeeee
Confidence 33455 457999998 57 688887 55
No 203
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.32 E-value=5.7e-12 Score=139.65 Aligned_cols=275 Identities=9% Similarity=-0.009 Sum_probs=158.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccC
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~ 497 (818)
++++++|+. .++ .......++++.++++++...-+.+++++||++|++.+++.+ .|
T Consensus 43 ~~~v~~a~~----~~~------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-------~g------- 98 (374)
T 2aeu_A 43 DEKDKALLN----TYI------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-------KP------- 98 (374)
T ss_dssp CHHHHHHHT----STT------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-------CC-------
T ss_pred CHHHHHHHH----Hhc------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-------CC-------
Confidence 577777775 221 112344677777777776310157899999999999999843 23
Q ss_pred CCccccccceEEEEEcCCCCCCccc--cccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccc
Q 003466 498 KDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (818)
Q Consensus 498 ~~~~~~~~r~~II~~~~sYHG~t~~--als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (818)
.+||+.+.+|||.... .+...|.. .+.
T Consensus 99 ---------d~Vl~~~~~y~~~~~~~~~~~~~g~~------------------------------~~~------------ 127 (374)
T 2aeu_A 99 ---------KKVIHYLPELPGHPSIERSCKIVNAK------------------------------YFE------------ 127 (374)
T ss_dssp ---------SEEEEECSSSSCCTHHHHHHHHTTCE------------------------------EEE------------
T ss_pred ---------CEEEEecCCCCccHHHHHHHHHcCcE------------------------------EEE------------
Confidence 2799999999984311 11111100 000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCcccCCHHHHHHHHHHHHhcC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-VIvEPV~~g~gG~~~~p~~fl~~LreLc~~~g 654 (818)
.+| .+.+++. ..++++ |+++.. ++.+|. +...+++|.++|++||
T Consensus 128 ----v~d------------------~~~l~~~---------~~~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~ 172 (374)
T 2aeu_A 128 ----SDK------------------VGEILNK---------IDKDTLVIITGST-MDLKVI---ELENFKKVINTAKNKE 172 (374)
T ss_dssp ----ESC------------------HHHHHTT---------CCTTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHT
T ss_pred ----eCC------------------HHHHHhc---------CCCccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcC
Confidence 011 1334332 235678 999986 788775 5677999999999999
Q ss_pred CcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccccceeecchHHHhhccCC--------hH--------
Q 003466 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD--------SK-------- 716 (818)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~i~~~l~~~--------~~-------- 716 (818)
+++|+||++.-+ ..|...........+|++ +++|.|+| ..+|.+++++++++.+... ..
T Consensus 173 ~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 249 (374)
T 2aeu_A 173 AIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG--PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYR 249 (374)
T ss_dssp CCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHH
T ss_pred CEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHH
Confidence 999999988432 211111000112346887 49999886 4788899999888754320 00
Q ss_pred HH-------HHH-------H----HHHHHc-CCC------ee-EEEeeeeEEEEEEecCcccCCCchHHHHHHHHHH-Hh
Q 003466 717 LW-------DLE-------L----IQQISS-HRT------VQ-RVVALGTLCAIELQAAGCNAGYGSLYAASLLKKL-RE 769 (818)
Q Consensus 717 ~~-------~~~-------l----~~~l~~-~~~------v~-~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l-~e 769 (818)
.+ .++ + .+.+.+ ++. +. .....|.++...-.... ........++..+ .+
T Consensus 250 al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~ll~~ 325 (374)
T 2aeu_A 250 ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDT----INIKKLIEIGFNLLKN 325 (374)
T ss_dssp HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccc----ccccchHHHHHHHHHh
Confidence 00 001 1 122211 121 11 23455666544211110 0000122355444 46
Q ss_pred CCceEeec------CCEEEEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 770 DGVYMRPL------GNVIYLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 770 ~Gvlv~p~------g~~ir~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
+||++.|+ .+.+|+.++. ..+++++++++++|+++++++.
T Consensus 326 ~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 326 YGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 89999863 2479999864 3344468999999999887764
No 204
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.30 E-value=9.8e-11 Score=134.83 Aligned_cols=198 Identities=11% Similarity=0.066 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.|++.|.+.. ..+.++++|++.-. ....|.+.+ +++|.++|++||+++++|+++.|+......+.....|+
T Consensus 230 ~~L~~~i~~~~--~~g~~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~ 302 (504)
T 2okj_A 230 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302 (504)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--HCCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc
Confidence 45555554200 11235778887664 666787765 99999999999999999999987754333332333455
Q ss_pred CCcEEEec--ccccCCccccceeecch-HHHhh--------ccC-C---------------------hH-------H---
Q 003466 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFDS--------FVG-D---------------------SK-------L--- 717 (818)
Q Consensus 681 ~PDivtlg--KgLggGy~PlsAvl~~~-~i~~~--------l~~-~---------------------~~-------~--- 717 (818)
.+|+++++ |.++++ +++|++++++ ++++. +.. . .. .
T Consensus 303 ~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~ 381 (504)
T 2okj_A 303 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 381 (504)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH
T ss_pred cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH
Confidence 68999886 998877 5899999876 35431 110 0 00 0
Q ss_pred ------------HHHHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccC-CCc-------hHHHHHHHHHHHhCCce-
Q 003466 718 ------------WDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGVY- 773 (818)
Q Consensus 718 ------------~~~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~a~~~~~~l~e~Gvl- 773 (818)
+.+.+.+.+++.+.+.-+. ..+.++.+.+.+..... ... ...+..+.+.|.++|++
T Consensus 382 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 461 (504)
T 2okj_A 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTM 461 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEE
Confidence 0112334455555443221 23445555543221000 000 01245688899999964
Q ss_pred Eee---cC--CEEEEECC-CCChHHHHHHHHHHHHHHHHH
Q 003466 774 MRP---LG--NVIYLMCG-PCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 774 v~p---~g--~~ir~~pp-l~~t~edId~~~~~l~~~l~~ 807 (818)
+.+ .+ +.+|+++. ..+|++||++++++|++++++
T Consensus 462 ~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 462 VGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 432 23 47999985 788999999999999887654
No 205
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.29 E-value=9e-11 Score=132.39 Aligned_cols=188 Identities=14% Similarity=0.001 Sum_probs=116.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhh-hccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t-~~~G~~~~~~ 496 (818)
++++.+|+.++++...+. ..+...++.++|+++++. +.++|++||++|++.|++.+ +.+. .+.+.
T Consensus 42 ~~~~~~a~~~~~~~~~~~-----~~~~~~~l~~~la~~~g~---~~~i~~~sGt~a~~~al~~l-~~~~~~~~~~----- 107 (437)
T 3bb8_A 42 GTKELQLMVEASLDGWLT-----TGRFNDAFEKKLGEYLGV---PYVLTTTSGSSANLLALTAL-TSPKLGVRAL----- 107 (437)
T ss_dssp CHHHHHHHHHHHHHCCCB-----SCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TCGGGGGGSC-----
T ss_pred CHHHHHHHHHHHHcCCcC-----CChHHHHHHHHHHHHHCC---CcEEEeCCHHHHHHHHHHHh-hhcccccccC-----
Confidence 589999999998764322 346788999999999974 57899999999999999876 2111 00000
Q ss_pred CCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-hhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~ 575 (818)
....+||+...+||+.... +...|.... .++... .+
T Consensus 108 -------~~gd~Vi~~~~~~~~~~~~-~~~~g~~~~----------------------------~v~~~~~~~------- 144 (437)
T 3bb8_A 108 -------KPGDEVITVAAGFPTTVNP-TIQNGLIPV----------------------------FVDVDIPTY------- 144 (437)
T ss_dssp -------CTTCEEEECSSSCHHHHHH-HHHTTCEEE----------------------------ECCEETTTT-------
T ss_pred -------CCcCEEEECCCCcHHHHHH-HHHcCCEEE----------------------------EEeccCccC-------
Confidence 1124788888888875533 222221100 000000 00
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
.-|+ +.+++.+. .++++|++-.. . |.. ..+++|.++|++||+
T Consensus 145 ----~~d~------------------~~l~~~i~--------~~~~~v~~~~~-~---g~~----~~~~~i~~l~~~~~~ 186 (437)
T 3bb8_A 145 ----NVNA------------------SLIEAAVS--------DKTKAIMIAHT-L---GNL----FDLAEVRRVADKYNL 186 (437)
T ss_dssp ----EECG------------------GGHHHHCC--------TTEEEEEEECG-G---GCC----CCHHHHHHHHHHHTC
T ss_pred ----CcCH------------------HHHHHhcC--------CCCeEEEEeCC-C---CCh----hcHHHHHHHHHHcCC
Confidence 0011 34555553 24667766322 1 222 349999999999999
Q ss_pred cEEEeeccc-CcccCCccchhcccCCCCcEEEec----ccccCCccccceeecchHH
Q 003466 656 PVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAV 707 (818)
Q Consensus 656 lLI~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg----KgLggGy~PlsAvl~~~~i 707 (818)
++|+||+|+ |....| ..++..+|+++++ |+++||. .|+++++++.
T Consensus 187 ~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g~--gg~~~~~~~~ 236 (437)
T 3bb8_A 187 WLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMGE--GGAVFTQSAE 236 (437)
T ss_dssp EEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCSS--CEEEEESCHH
T ss_pred EEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCCC--eEEEEeCCHH
Confidence 999999996 432222 3455568987664 8887763 6778877443
No 206
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.29 E-value=1.4e-11 Score=139.46 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
+.++...+|+++|+++.+. +.+++++||++|+..|++.+. +.| ..||+.+..|++.
T Consensus 79 ~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~-----~~G----------------d~Vi~~~~~y~~~ 134 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLA-----RAG----------------DSVVTTDRLFGHT 134 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHC-----CTT----------------CEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchhH
Confidence 4578889999999999874 568888999999999998661 222 3688888888764
Q ss_pred cccc---ccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhH
Q 003466 520 TLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (818)
Q Consensus 520 t~~a---ls~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~ 596 (818)
.... +...|.. .+.+| .+|
T Consensus 135 ~~~~~~~~~~~G~~------------------------------~~~v~--------------~~d-------------- 156 (430)
T 3ri6_A 135 LSLFQKTLPSFGIE------------------------------VRFVD--------------VMD-------------- 156 (430)
T ss_dssp HHHHHTHHHHTTCE------------------------------EEEEC--------------TTC--------------
T ss_pred HHHHHHHHHHcCCE------------------------------EEEeC--------------CCC--------------
Confidence 3211 1111100 00011 112
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhc
Q 003466 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
.+.+++.+. .++++|++|.. ++..|.+.+ +++|.++|++||+++|+||+++ +|..+...
T Consensus 157 ----~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~ 215 (430)
T 3ri6_A 157 ----SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAK 215 (430)
T ss_dssp ----HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGG
T ss_pred ----HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChH
Confidence 255666664 36889999987 888888875 8999999999999999999995 23333334
Q ss_pred ccCCCCcEEEecccccCCccccceeec
Q 003466 677 LLGCVPDIACYGKLLTGGVIPLAATLA 703 (818)
Q Consensus 677 ~~gv~PDivtlgKgLggGy~PlsAvl~ 703 (818)
.+|....+.+++|.++|.-..+|.+++
T Consensus 216 ~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 216 RLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp GGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred HcCCEEEEECCcccccCCCCceEEEEE
Confidence 456544445788999873133444444
No 207
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.21 E-value=3.6e-10 Score=130.19 Aligned_cols=310 Identities=11% Similarity=-0.007 Sum_probs=174.9
Q ss_pred CHHHHHHHHHhhhhccc-----ccCCCCCChhHHHHHHHHHhccC-CC-CCCcEEEeCChhHHHHHHHHHHHHHhhhccc
Q 003466 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~-----~~~~~~~~~~~~eLae~L~~~~~-~~-~l~~v~f~~SGseA~e~ALklA~r~~t~~~G 490 (818)
..++.+++.+++++.+. +....+..+...++++.+.+..+ -+ ..+.+++++++++|+..++++. ...|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-----~~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-----VSGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-----CCCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-----cCCC
Confidence 56677888887776431 11223344677788888876543 11 1368999999999999999976 1111
Q ss_pred ccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
. ..+..|++..-+|.... .++...|... +.+|.
T Consensus 178 d------------~~~d~Vlv~~p~y~~~~-~~~~~~g~~~------------------------------v~~~~---- 210 (498)
T 3ihj_A 178 G------------KSRTGVMIPIPQYPLYS-AVISELDAIQ------------------------------VNYYL---- 210 (498)
T ss_dssp G------------GGSEEEEEEESCCTHHH-HHHHHTTCEE------------------------------EEEEC----
T ss_pred C------------CCCCEEEEeCCCchhHH-HHHHHcCCEE------------------------------EEeec----
Confidence 1 11246777777776543 3333333211 00110
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc 650 (818)
+. +..|. -| .+.|++.+... ....++.+|++... ++..|.+. +.+-+++|.++|
T Consensus 211 ----------~~-~~~~~--~d--------~~~le~~l~~~---~~~~~~k~i~l~np-~NPTG~v~-s~~~l~~i~~la 264 (498)
T 3ihj_A 211 ----------DE-ENCWA--LN--------VNELRRAVQEA---KDHCDPKVLCIINP-GNPTGQVQ-SRKCIEDVIHFA 264 (498)
T ss_dssp ----------BG-GGTTB--CC--------HHHHHHHHHHH---TTTSEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHH
T ss_pred ----------cc-cccCC--CC--------HHHHHHHHHhh---hccCCCeEEEEECC-CCCCCCcC-CHHHHHHHHHHH
Confidence 00 00000 01 25667777631 11125666666653 77788766 788899999999
Q ss_pred HhcCCcEEEeecccCcccCC--ccchhccc--CCC------Cc---EEEeccccc--CCccccceee---cchHHHhhcc
Q 003466 651 QNRKIPVIFDEVFTGFWRLG--VETTADLL--GCV------PD---IACYGKLLT--GGVIPLAATL---ATNAVFDSFV 712 (818)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG--~~~a~e~~--gv~------PD---ivtlgKgLg--gGy~PlsAvl---~~~~i~~~l~ 712 (818)
++||+++|+||++..+...+ ........ +.. .. +.++||++. .| +.+|.++ .++++++.+.
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~ 343 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLV 343 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHH
Confidence 99999999999997653222 12111111 111 11 237899994 57 6888887 5787776542
Q ss_pred CChH---------------H-------------HH--------------HHHHHHHHcCCCeeEEEeeeeEEEE-EEecC
Q 003466 713 GDSK---------------L-------------WD--------------LELIQQISSHRTVQRVVALGTLCAI-ELQAA 749 (818)
Q Consensus 713 ~~~~---------------~-------------~~--------------~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~ 749 (818)
.... . +. +.+.+.+++++.+.-+...|.++.+ .+..+
T Consensus 344 ~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p 423 (498)
T 3ihj_A 344 KLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIP 423 (498)
T ss_dssp HHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCC
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCc
Confidence 1100 0 00 1123345556555444444444433 34211
Q ss_pred ccc------CCCchHHHHH-HHHHHHhCCceEeec--------CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 750 GCN------AGYGSLYAAS-LLKKLREDGVYMRPL--------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 750 ~~~------~~~~~~~a~~-~~~~l~e~Gvlv~p~--------g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
... ...+ .... +.+.|.++||++.|+ .+.+|++. .++++++++++++|.++++++.+
T Consensus 424 ~~~~~~~~~~g~~--~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 424 AKAVEAAQAHQMA--PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHTTSC--HHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhcCCC--cHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 1112 244556789999872 14788887 37899999999999999988764
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.20 E-value=1.4e-09 Score=123.23 Aligned_cols=302 Identities=10% Similarity=-0.057 Sum_probs=172.9
Q ss_pred CHHHHHHHHHhhhhccccc-CCCCCChhHHHHHHHHHhccCCCCCC----cEEEeCChhHHHHHHHHHHHHHhhh---cc
Q 003466 418 QIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGWAS----RAYFSDNGSTAIEIALKMAFRKFSF---DH 489 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~l~----~v~f~~SGseA~e~ALklA~r~~t~---~~ 489 (818)
+|.+.+++.+.++...... ......+...++.++|+++++.+.-. .++++++|+||+..|+..++..+.. ..
T Consensus 55 ~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~ 134 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA 134 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999998886532211 00112344566777778888743111 3899999999999999987322211 01
Q ss_pred cccccccCCCccccc-cceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc-h
Q 003466 490 EVLVDFLGKDTTEKC-IELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-W 567 (818)
Q Consensus 490 G~~~~~~~~~~~~~~-~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~-~ 567 (818)
|. + .+..||+.+ +|.+...++...|.... .++... .
T Consensus 135 G~------------~~~~~~vi~~~--~h~~~~~~~~~~G~~v~----------------------------~v~~~~~~ 172 (452)
T 2dgk_A 135 GK------------PTDKPNLVCGP--VQICWHKFARYWDVELR----------------------------EIPMRPGQ 172 (452)
T ss_dssp TC------------CCSCCEEEESS--CCHHHHHHHHHTTCEEE----------------------------ECCCBTTB
T ss_pred CC------------CCCCcEEEECC--CcHHHHHHHHHcCceEE----------------------------EEecCCCC
Confidence 21 1 123566554 77665544444332210 011000 0
Q ss_pred hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003466 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 568 ~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~Lr 647 (818)
+ ..| .+.|++.|. +++.+|++.-. ....|.+.+ +++|.
T Consensus 173 ~-----------~~d------------------~~~l~~~i~--------~~t~~v~~~~~-~n~tG~~~~----l~~I~ 210 (452)
T 2dgk_A 173 L-----------FMD------------------PKRMIEACD--------ENTIGVVPTFG-VTYTGNYEF----PQPLH 210 (452)
T ss_dssp C-----------SCC------------------HHHHHHHCC--------TTEEEEECBBS-CTTTCBBCC----HHHHH
T ss_pred C-----------eEC------------------HHHHHHHHh--------hCCEEEEEEcC-CcCCcccCC----HHHHH
Confidence 0 011 256777764 23455554432 456777765 99999
Q ss_pred HHHHhc------CCcEEEeecccCccc---CCcc-chhcccCCCCcEEEec--ccccCCccccceeecchH-HH-hhc--
Q 003466 648 KECQNR------KIPVIFDEVFTGFWR---LGVE-TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA-VF-DSF-- 711 (818)
Q Consensus 648 eLc~~~------gilLI~DEV~TGfGR---tG~~-~a~e~~gv~PDivtlg--KgLggGy~PlsAvl~~~~-i~-~~l-- 711 (818)
++|++| |+++++|+++.|+.. .++. +..+. -..|.++++ |.+.+| ..+|+++++++ +. +.+
T Consensus 211 ~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~ 287 (452)
T 2dgk_A 211 DALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDEEALPQELVF 287 (452)
T ss_dssp HHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCE
T ss_pred HHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCHHHHHHHhcc
Confidence 999996 999999999977522 1110 11111 135766654 866555 46788888643 32 221
Q ss_pred -----c--------CCh----H---------H---------------HHHHHHHHHHcCCCeeEEE-----eeeeEEEEE
Q 003466 712 -----V--------GDS----K---------L---------------WDLELIQQISSHRTVQRVV-----ALGTLCAIE 745 (818)
Q Consensus 712 -----~--------~~~----~---------~---------------~~~~l~~~l~~~~~v~~vr-----g~Gl~~~ie 745 (818)
. ... . . ..+.+.+.+++.+.+.-+. ....++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~ 367 (452)
T 2dgk_A 288 NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 367 (452)
T ss_dssp EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEE
T ss_pred CccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEE
Confidence 0 000 1 0 0112344556666543332 234566666
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDK 810 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~ 810 (818)
+.... ... .....+.+.|.++|++++. . ...+|++....+|++|+|++++.|+++++++.+
T Consensus 368 ~~~~~-~~~---~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 368 LKDGE-DPG---YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp ECTTC-CCS---CCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcc-ccc---CCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 64321 000 1135688899999997542 1 248999998888999999999999999887754
No 209
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.20 E-value=3.4e-10 Score=125.47 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=126.2
Q ss_pred ceeecccccccccCCCC-CCHHHHHHHHHhhhhcccccC--CCCCChhHHHHHHHHHhccCCC-CCCcEEE--eCChhHH
Q 003466 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WASRAYF--SDNGSTA 473 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~-~hp~V~eAi~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~-~l~~v~f--~~SGseA 473 (818)
..||+..|......++- ..+++.+|+.+.++..+...+ ..+..+....+++.+....+.. ..+++++ +++|++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 35777665543333322 034677777766543221111 1122344555566555432200 0257777 9999999
Q ss_pred HHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 474 ~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
+..+++.+ +.+. ..| ..|++.+.+|++.. ..+...|...
T Consensus 109 l~~~~~~l-~~~~-~~g----------------d~Vlv~~p~~~~~~-~~~~~~g~~~---------------------- 147 (401)
T 7aat_A 109 LRVGANFL-QRFF-KFS----------------RDVYLPKPSWGNHT-PIFRDAGLQL---------------------- 147 (401)
T ss_dssp HHHHHHHH-HHHC-TTC----------------CEEEEEESCCTTHH-HHHHHTTCEE----------------------
T ss_pred HHHHHHHH-HHhc-cCC----------------CEEEEcCCCchhHH-HHHHHcCCee----------------------
Confidence 99999877 3332 222 36888888887643 2222222110
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
+.+|. ++. ..+. -| .+.+++.+++ ...+..++++... ++..
T Consensus 148 --------~~~~~--------------~~~-~~~~--~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~NPt 188 (401)
T 7aat_A 148 --------QAYRY--------------YDP-KTCS--LD--------FTGAMEDISK-----IPEKSIILLHACA-HNPT 188 (401)
T ss_dssp --------EEEEC--------------EET-TTTE--EC--------HHHHHHHHTT-----SCTTCEEEEESSS-CTTT
T ss_pred --------Eeeee--------------ecc-ccCc--cC--------HHHHHHHHHh-----CCCCcEEEEeCCC-CCCC
Confidence 11110 000 0000 00 1345555652 1345677787775 8888
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc-CCCCcE---EEeccccc-CCccccceeec
Q 003466 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDI---ACYGKLLT-GGVIPLAATLA 703 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~-gv~PDi---vtlgKgLg-gGy~PlsAvl~ 703 (818)
|.+. +.+.+++|.++|++||+++|.||++.+|+..+. .+....+ +..+++ .++||.+| .| +.+|++++
T Consensus 189 G~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~RiG~l~~ 264 (401)
T 7aat_A 189 GVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG-ERAGAFTV 264 (401)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEE
T ss_pred CCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccccc-CceEEEEE
Confidence 8765 889999999999999999999999988866543 2222221 233443 58999998 56 68888665
No 210
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.20 E-value=2.7e-11 Score=137.62 Aligned_cols=170 Identities=10% Similarity=0.040 Sum_probs=105.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc-cchhcccCCCCcEEEec--ccccCCc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYG--KLLTGGV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlg--KgLggGy 695 (818)
++++|++.+- .. .|.+.+ +++|.++|++||+++|+||++++..+.+. .+....+| +|+++.| |.++|+
T Consensus 146 ~~~~v~~~~~-n~-~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g--~Di~~~S~~K~l~~~- 216 (446)
T 2x3l_A 146 GHKLVVLTYP-NY-YGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ--ADYVVQSFHKTLPAL- 216 (446)
T ss_dssp -CCEEEEESS-CT-TSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT--CSEEEECHHHHSSSC-
T ss_pred CceEEEEECC-CC-CeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC--CCEEEECCccccccc-
Confidence 4566777662 33 677765 89999999999999999999976222222 22222233 7999877 988876
Q ss_pred cccceeecchHHHh--hcc-------CChH-------------HH--------HHH---HHHHHHcCCCeeEEEe-eeeE
Q 003466 696 IPLAATLATNAVFD--SFV-------GDSK-------------LW--------DLE---LIQQISSHRTVQRVVA-LGTL 741 (818)
Q Consensus 696 ~PlsAvl~~~~i~~--~l~-------~~~~-------------~~--------~~~---l~~~l~~~~~v~~vrg-~Gl~ 741 (818)
.++|++++++++++ .+. .... .+ .++ +.+.+.+.+ +.-+.. .+..
T Consensus 217 ~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~ 295 (446)
T 2x3l_A 217 TMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENKG-FEMLQVDDPLK 295 (446)
T ss_dssp TTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT-CEEEECSSTTE
T ss_pred cccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC-CEECcCCCCeE
Confidence 57888988877643 111 1110 01 111 111222111 111110 1222
Q ss_pred EEEEEecCcccCCCchHHHHHHHHHHHhCCceEe-ecCCEEEEECCCCChHHHHHHHHHHHHHHHHHH
Q 003466 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR-PLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 742 ~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~-p~g~~ir~~ppl~~t~edId~~~~~l~~~l~~l 808 (818)
+.+.+.. ..+..+.+.|.++||.+. +..+.+|+.++..+|++|+ +++++|.++++++
T Consensus 296 l~i~~~~---------~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 296 LLIKYEG---------FTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EEEECTT---------SCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEEEeCC---------cCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 3333321 124568889999999998 5557899999998999999 9999999887654
No 211
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=99.18 E-value=4.2e-11 Score=131.07 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=112.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceeccCCCCCCchHHHHHhccCCccccCCCcccccccch
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (818)
.+.+||+||++++|||++++.|.++|+ ++|++++++++.|+|.--..+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~--------------------------- 216 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD--------------------------- 216 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS---------------------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC---------------------------
Confidence 467999999999999999999999994 899999999987764210000
Q ss_pred hhhhHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCcccccccccceecccccChHHHHhhhcCCCCChhH
Q 003466 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (818)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (818)
..+......+++.+.+.+ +
T Consensus 217 -----------------------------------------------------~gv~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 217 -----------------------------------------------------AGYVIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp -----------------------------------------------------EECCGGGSBGGGHHHHHH-H-------
T ss_pred -----------------------------------------------------CCCCCCceecchhhHHHH-h-------
Confidence 011222455677777766 2
Q ss_pred HHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEc-CC-----------C-Ch
Q 003466 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-GR-----------L-GG 263 (818)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~-~~-----------~-g~ 263 (818)
+...+. . +.+|++||||+||+..|... ...+.+.+-.+.+.+++.. .. + +.
T Consensus 236 ~i~~~~--~-------------~~~D~ivVEGqGgl~~P~~~-~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--K-------------TGKEIVFVEGQGALRHPAYG-QVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--H-------------TTCSEEEEECCSCTTCTTTH-HHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--h-------------cCCCEEEEccCeeccccCch-HHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 2 24899999999999999752 2378899999999988865 21 5 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-EccCCCCCHHHHHHhhcCCCCEEe
Q 003466 264 ISGTISAYESLKLRGYDVVAVV-FEDHGLVNEVPLMSYLRNRVPVLV 309 (818)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi-~N~~~~~~~~~l~~~~~~~~pvlg 309 (818)
+++.+.+++.+. +.+|+||+ +|. ++.+ ++|+.-
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~---------~~~~--glP~~d 333 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG---------GFET--DLPVYD 333 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC---------CCCC--SSCEEC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc---------hHHH--CCCeee
Confidence 999999999987 89999999 996 3344 788765
No 212
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.18 E-value=2.2e-10 Score=129.06 Aligned_cols=258 Identities=13% Similarity=0.087 Sum_probs=157.2
Q ss_pred CCCChhHHHHHHHHHhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCC
Q 003466 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (818)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG 518 (818)
.+.++...+|+++|+++.+. +.+++++||++|+..|++... +.| ..||+.+..|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchH
Confidence 34578889999999999874 567778999999999988541 122 378888888876
Q ss_pred CccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHH
Q 003466 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (818)
Q Consensus 519 ~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~ 598 (818)
.. ..+.-. .. + .|. ....+| .+|+
T Consensus 134 ~~-~~~~~~-l~--~----------~G~-------------~v~~v~--------------~~d~--------------- 157 (415)
T 2fq6_A 134 SQ-DFCSKI-LS--K----------LGV-------------TTSWFD--------------PLIG--------------- 157 (415)
T ss_dssp HH-HHHHHT-GG--G----------GTC-------------EEEEEC--------------TTCG---------------
T ss_pred HH-HHHHHH-HH--H----------cCc-------------EEEEEC--------------CCCH---------------
Confidence 32 211100 00 0 000 000000 1221
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCcccCCccchhc
Q 003466 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (818)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGRtG~~~a~e 676 (818)
+.+++.|. .++.+|++|.+ ++..|.+.+ +++|.++|++ ||+++|+||+|. .+..+...
T Consensus 158 ---~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a-~~~~~~p~--- 217 (415)
T 2fq6_A 158 ---ADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA-AGVLFKAL--- 217 (415)
T ss_dssp ---GGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSSCGG---
T ss_pred ---HHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCc-ccccCCcc---
Confidence 33444443 35789999987 888888886 8999999999 999999999995 22222211
Q ss_pred ccCCCCcEE--EecccccCCc-cccceeecchHHHhhccC-----Ch---H---------------HHH------HHHHH
Q 003466 677 LLGCVPDIA--CYGKLLTGGV-IPLAATLATNAVFDSFVG-----DS---K---------------LWD------LELIQ 724 (818)
Q Consensus 677 ~~gv~PDiv--tlgKgLggGy-~PlsAvl~~~~i~~~l~~-----~~---~---------------~~~------~~l~~ 724 (818)
..-.|++ +++|.++++- ...|++++++++++.+.. +. . .++ ..+.+
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~ 295 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAE 295 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 2236887 6899998632 346788888776664431 10 0 000 12334
Q ss_pred HHHcCCCeeEE------------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCce----------Ee-
Q 003466 725 QISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVY----------MR- 775 (818)
Q Consensus 725 ~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvl----------v~- 775 (818)
.+++++.+..+ ++.|.++.|++.... +...+..+...|...++. ..
T Consensus 296 ~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~ 370 (415)
T 2fq6_A 296 WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDNFSLFSMAYSWGGYESLILAN 370 (415)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTTCSSCEECSCCCSSSCEEEEE
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHhCCcCeEeccCCCCceeEEec
Confidence 45666665544 246888999986410 012344444443211211 11
Q ss_pred -e--------------cCCEEEEECCCCChHHHHHHHHHHHHH
Q 003466 776 -P--------------LGNVIYLMCGPCSSPEVCSQLLLKLYQ 803 (818)
Q Consensus 776 -p--------------~g~~ir~~ppl~~t~edId~~~~~l~~ 803 (818)
| .++.||++.-+..++++|+.+.++|++
T Consensus 371 ~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 371 QPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 137899999999999999998888764
No 213
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.16 E-value=2.3e-09 Score=123.56 Aligned_cols=303 Identities=12% Similarity=-0.044 Sum_probs=170.3
Q ss_pred CCCCHHHHHHHHHhhhhcccccC-CCCCChhHHHHHHHHHhccCCC--C--CCcEEEeCChhHHHHHHHHHHHHHhhhc-
Q 003466 415 ATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG--W--ASRAYFSDNGSTAIEIALKMAFRKFSFD- 488 (818)
Q Consensus 415 h~~hp~V~eAi~~q~~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~--~--l~~v~f~~SGseA~e~ALklA~r~~t~~- 488 (818)
+- +|.+.+++.+.++....... .....+...++.++|+++++.+ . .....++++|+||+..|+..+++.+..+
T Consensus 67 ~~-~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 67 WM-EPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CC-CHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 44 89999999998876432110 0012334446667778877642 0 1134578999999999998874333211
Q ss_pred --ccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcc
Q 003466 489 --HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (818)
Q Consensus 489 --~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (818)
.|. ...+..||+- ...|.+...++...|... ..++...
T Consensus 146 ~~~G~-----------~~~~~~vi~~-~~~h~s~~~~~~~~G~~~----------------------------~~v~~~~ 185 (502)
T 3hbx_A 146 KAEGK-----------PVDKPNIVTG-ANVQVCWEKFARYFEVEL----------------------------KEVKLSE 185 (502)
T ss_dssp HHTTC-----------CCSCCEEEEE-TTCCHHHHHHHHHTTCEE----------------------------EEECCBT
T ss_pred HhcCC-----------CCCCcEEEEc-CCchHHHHHHHHHcCcee----------------------------EEEecCC
Confidence 121 0122345554 445655444444433221 0111110
Q ss_pred h-hhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003466 567 W-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (818)
Q Consensus 567 ~-~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~ 645 (818)
. + .-| .+.+++.+. ++..+|++.-. ....|.+.+ +++
T Consensus 186 ~~~-----------~~d------------------~~~l~~~i~--------~~t~~v~~~~~-~n~tG~~~~----l~~ 223 (502)
T 3hbx_A 186 GYY-----------VMD------------------PQQAVDMVD--------ENTICVAAILG-STLNGEFED----VKL 223 (502)
T ss_dssp TBC-----------SCC------------------HHHHHHHCC--------TTEEEEEEEBS-CTTTCCBCC----HHH
T ss_pred CcC-----------cCC------------------HHHHHHHHh--------hCCEEEEEecC-CCCCCcccC----HHH
Confidence 0 0 001 255666664 23455554433 455677766 999
Q ss_pred HHHHHHhc------CCcEEEeecccCccc---CCcc-chhcccCCCCcEE--EecccccCCccccceeecc-hHHH----
Q 003466 646 LVKECQNR------KIPVIFDEVFTGFWR---LGVE-TTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVF---- 708 (818)
Q Consensus 646 LreLc~~~------gilLI~DEV~TGfGR---tG~~-~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~-~~i~---- 708 (818)
|.++|++| |+++++|+++.|+.. .+.. +.+.. -..|.+ ...|.+.++ .-+|+++++ ++.+
T Consensus 224 I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~ 300 (502)
T 3hbx_A 224 LNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEEL 300 (502)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGG
T ss_pred HHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCC-CCeEEEEEeCHHHhhHHh
Confidence 99999999 999999999976521 1111 11111 134655 345666554 356666654 3333
Q ss_pred ----hhccCC-----------h-H------------------------HHHHHHHHHHHcCCCeeEEEe--eeeEEEEEE
Q 003466 709 ----DSFVGD-----------S-K------------------------LWDLELIQQISSHRTVQRVVA--LGTLCAIEL 746 (818)
Q Consensus 709 ----~~l~~~-----------~-~------------------------~~~~~l~~~l~~~~~v~~vrg--~Gl~~~iel 746 (818)
.++... . . ...+.+.+.|++++.+.-+.. ...++.+.+
T Consensus 301 ~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (502)
T 3hbx_A 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSL 380 (502)
T ss_dssp CEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEE
T ss_pred ccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEe
Confidence 111111 0 1 001123455666664433322 344666666
Q ss_pred ecCcccCCCchHHHHHHHHHHHhCCceEee----c----CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 747 QAAGCNAGYGSLYAASLLKKLREDGVYMRP----L----GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 747 ~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----~----g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
.... . .....+.+.|.++|+++.. . ...+|++....+|++|++.+++.|+++++++.
T Consensus 381 ~~~~---~---~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 381 KDSS---C---HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp SSCS---S---CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC---c---CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4321 0 1234688999999998753 1 15799999999999999999999999998875
No 214
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.15 E-value=3.6e-10 Score=131.80 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=131.2
Q ss_pred ceeecccccccccCCCCCCHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHHHhc-cCCC----CCCcEEEeCChhHHH
Q 003466 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAI 474 (818)
Q Consensus 400 ~ylD~~sg~~~~~lGh~~hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L~~~-~~~~----~l~~v~f~~SGseA~ 474 (818)
..||+..| ..++. +|.+++++.+++....+. ...+..+...++++.+.+. .+.+ ..+.+++++++++|+
T Consensus 105 ~~i~l~~g----~~~~~-~~~~~~al~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal 178 (546)
T 2zy4_A 105 KSLSYVRD----QLGLD-PAAFLHEMVDGILGCNYP-VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM 178 (546)
T ss_dssp HHHHHHHH----TSCCC-HHHHHHHHHHHHHTCSCC-SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred hhhecccC----CCCCC-ChHHHHHHHHhhhcCCCC-CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence 35666543 45788 899999999887532222 1223456677777666432 1110 125899999999999
Q ss_pred HHHHHHHH-HHhhhcccccccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcc
Q 003466 475 EIALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (818)
Q Consensus 475 e~ALklA~-r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~ 553 (818)
..+++... +.+. ..| ..|++.+.+|++....+. +.+..
T Consensus 179 ~~~~~~l~~~~l~-~~G----------------d~Vlv~~P~y~~~~~~~~-~~~~g----------------------- 217 (546)
T 2zy4_A 179 AYIFESLKLNGLL-KAG----------------DKVAIGMPVFTPYIEIPE-LAQYA----------------------- 217 (546)
T ss_dssp HHHHHHHHHTTSS-CTT----------------CEEEEEESCCHHHHHHHH-STTSC-----------------------
T ss_pred HHHHHHhhhhhcC-CCC----------------CEEEEeCCCCccHHHHHH-HcCCC-----------------------
Confidence 99998731 1111 112 378899999998553321 11100
Q ss_pred cccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003466 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (818)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~g 633 (818)
...+.+|... -+ .|. .| .+.+++.+. .++.+|++... ++..
T Consensus 218 -----~~~~~v~~~~-----------~~----~~~--~d--------~~~l~~~~~--------~~~k~v~l~~p-~NPt 258 (546)
T 2zy4_A 218 -----LEEVAINADP-----------SL----NWQ--YP--------DSELDKLKD--------PAIKIFFCVNP-SNPP 258 (546)
T ss_dssp -----CEEEEEECBG-----------GG----TTB--CC--------HHHHGGGGS--------TTEEEEEEESS-CSSS
T ss_pred -----cEEEEEecCc-----------cc----CCC--CC--------HHHHHHhhC--------CCCeEEEEECC-CCCC
Confidence 0001111000 00 000 00 134444332 35667666654 7888
Q ss_pred CcccCCHHHHHHHHHHH--HhcCCcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CCccccceeecchH-HHh
Q 003466 634 GMHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFD 709 (818)
Q Consensus 634 G~~~~p~~fl~~LreLc--~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gGy~PlsAvl~~~~-i~~ 709 (818)
|.+. +.+.+++|.++| ++||+++|.||+++.|...+........+....+.+|||.+| .| +.+|.++++++ +++
T Consensus 259 G~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~ 336 (546)
T 2zy4_A 259 SVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFD 336 (546)
T ss_dssp CBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHH
T ss_pred CccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHH
Confidence 8766 788899999999 899999999999998864322221111122222558999997 67 68999998775 544
Q ss_pred h
Q 003466 710 S 710 (818)
Q Consensus 710 ~ 710 (818)
.
T Consensus 337 ~ 337 (546)
T 2zy4_A 337 L 337 (546)
T ss_dssp H
T ss_pred H
Confidence 3
No 215
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.12 E-value=3.7e-09 Score=121.14 Aligned_cols=193 Identities=9% Similarity=0.029 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.|++.|++.. ..+....+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|+...+..+.....|+
T Consensus 226 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~ 298 (481)
T 4e1o_A 226 EALQKAIEEDK--QRGLVPVFVCATLG-TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298 (481)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG
T ss_pred HHHHHHHHHHH--hCCCCcEEEEEecC-CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc
Confidence 55666665310 11122344444432 456677765 99999999999999999999976433333333223354
Q ss_pred CCcEEEe--cccccCCccccceeecchH-HH-hh-------ccCC---------------h---H---------------
Q 003466 681 VPDIACY--GKLLTGGVIPLAATLATNA-VF-DS-------FVGD---------------S---K--------------- 716 (818)
Q Consensus 681 ~PDivtl--gKgLggGy~PlsAvl~~~~-i~-~~-------l~~~---------------~---~--------------- 716 (818)
..|.+++ .|.+++- ...|+++++++ .. +. +... + .
T Consensus 299 ~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g 377 (481)
T 4e1o_A 299 YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKN 377 (481)
T ss_dssp GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHH
Confidence 4587765 6888764 35566666543 22 11 1100 0 0
Q ss_pred ---------HHHHHHHHHHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc-eEee---cC-CEE
Q 003466 717 ---------LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV-YMRP---LG-NVI 781 (818)
Q Consensus 717 ---------~~~~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv-lv~p---~g-~~i 781 (818)
.+.+.+.+.+++.+.+.-+. ....++.+.+... ......+.++|.++|+ ++.+ .| ..+
T Consensus 378 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~l 450 (481)
T 4e1o_A 378 LQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-------NSLTENVLKEIAKAGRLFLIPATIQDKLII 450 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHCSSBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-------hHHHHHHHHHHHhCCeEEEEeeEECCEEEE
Confidence 01112344555665442221 1233455555322 1346778899999984 4444 23 578
Q ss_pred EEECCC-CChHHHHHHHHHHHHHHHHHHH
Q 003466 782 YLMCGP-CSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 782 r~~ppl-~~t~edId~~~~~l~~~l~~l~ 809 (818)
|++... ..|++||++++++|+++++++.
T Consensus 451 R~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 451 RFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998664 4589999999999999887653
No 216
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.09 E-value=1e-09 Score=119.29 Aligned_cols=163 Identities=12% Similarity=-0.000 Sum_probs=106.4
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEE--ecccccCCc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgKgLggGy 695 (818)
.++.+|++... ++..|.+.+ +|+++||+++|+||+++.+.+.- ....+ |+++ ++|.+|.+
T Consensus 140 ~~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~~---~~~~~----di~~~s~sK~~~~~- 201 (360)
T 1w23_A 140 ENDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRPL---KVNQF----GMIYAGAQKNLGPS- 201 (360)
T ss_dssp TTEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSCC---CGGGC----SEEEEETTTTTSCT-
T ss_pred CCCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCCc---CcccC----CEEEEEcccccCCC-
Confidence 35788888886 888888764 34448999999999996543321 11222 7775 55998732
Q ss_pred cccceeecchHHHhhccCC--------------------hH-----------HHH----------------HHHHHHHHc
Q 003466 696 IPLAATLATNAVFDSFVGD--------------------SK-----------LWD----------------LELIQQISS 728 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~--------------------~~-----------~~~----------------~~l~~~l~~ 728 (818)
.+|.+++++++++.+... .. .+. +.+.+.+++
T Consensus 202 -G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 280 (360)
T 1w23_A 202 -GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE 280 (360)
T ss_dssp -TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999887655321 00 100 112334455
Q ss_pred CCCe-eEE--E--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHH
Q 003466 729 HRTV-QRV--V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 729 ~~~v-~~v--r--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~ 800 (818)
++.+ ... . ..+.++.+.+... ..+..+.+.|.++||.+.+. .+.+|+.+....|++++++++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~ 352 (360)
T 1w23_A 281 SNGFYVGHAEKGSRSLMNVTFNLRNE--------ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALREL 352 (360)
T ss_dssp TTTSSEESSCGGGBCSSEEEEECSSH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred ccCcccccCCchhccCcEEEEEcCCC--------ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 5532 211 1 1244666665321 23567888899999999874 26799999988899999999999
Q ss_pred HHHHHHH
Q 003466 801 LYQRLEE 807 (818)
Q Consensus 801 l~~~l~~ 807 (818)
|++++++
T Consensus 353 l~~~~~~ 359 (360)
T 1w23_A 353 MIQFKEN 359 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9887654
No 217
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.07 E-value=8.5e-09 Score=119.14 Aligned_cols=291 Identities=12% Similarity=0.031 Sum_probs=161.0
Q ss_pred hHHHHHHHHHhccCCCC-CCcEEEeCChhHHHHHHHHHHHHHhh---hcccccccccCCCccccccceEEEEEcCCCCCC
Q 003466 444 PALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFS---FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (818)
Q Consensus 444 ~~~eLae~L~~~~~~~~-l~~v~f~~SGseA~e~ALklA~r~~t---~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~ 519 (818)
...++++++++++|.+. ...++|+++|++||..|+..++..+. ...|. ......+|......|.+
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~-----------~~~~~~~v~~s~~~H~s 204 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM-----------AAVPKLVLFTSEQSHYS 204 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG-----------GGSCCEEEEEETTSCTH
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc-----------ccCCCeEEEECCCchHH
Confidence 34455566677666431 14789999999999999999843220 11121 00123456666667776
Q ss_pred ccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhccccccccccCccchhhcccCchhHHHH
Q 003466 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (818)
Q Consensus 520 t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~nd~~~~~~~~~~~~~~~~~ 599 (818)
...++...|....+ ...++....+ ..|
T Consensus 205 ~~~~~~~~g~g~~~-------------------------~~~v~~d~~~-----------~~d----------------- 231 (511)
T 3vp6_A 205 IKKAGAALGFGTDN-------------------------VILIKCNERG-----------KII----------------- 231 (511)
T ss_dssp HHHHHHHTTSCGGG-------------------------EEEECBCTTS-----------CBC-----------------
T ss_pred HHHHHHHcCCCCCc-------------------------EEEeecCCCC-----------ccC-----------------
Confidence 66665555421000 0011111000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccC
Q 003466 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~g 679 (818)
.+.|++.|++.. ..+..+.+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|.--...-+.....|
T Consensus 232 -~~~Le~~i~~~~--~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g 303 (511)
T 3vp6_A 232 -PADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 303 (511)
T ss_dssp -HHHHHHHHHHHH--HTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTT
T ss_pred -HHHHHHHHHHHH--hcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccC
Confidence 145666665310 11234677887765 677788765 9999999999999999999996542222222222224
Q ss_pred C-CCcEEE--ecccccCCccccceeecch-HHHhh--------ccCC-----------------h---H---------H-
Q 003466 680 C-VPDIAC--YGKLLTGGVIPLAATLATN-AVFDS--------FVGD-----------------S---K---------L- 717 (818)
Q Consensus 680 v-~PDivt--lgKgLggGy~PlsAvl~~~-~i~~~--------l~~~-----------------~---~---------~- 717 (818)
+ ..|.++ ..|.+++. +-.|++++++ ++.+. +... + . .
T Consensus 304 ~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~ 382 (511)
T 3vp6_A 304 IERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK 382 (511)
T ss_dssp GGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH
T ss_pred CccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH
Confidence 4 468764 56888765 3566677654 33322 1100 0 0 0
Q ss_pred --------------HHHHHHHHHHcCCCeeEEE---eeeeEEEEEEecCcccC-CCc-------hHHHHHHHHHHHhCCc
Q 003466 718 --------------WDLELIQQISSHRTVQRVV---ALGTLCAIELQAAGCNA-GYG-------SLYAASLLKKLREDGV 772 (818)
Q Consensus 718 --------------~~~~l~~~l~~~~~v~~vr---g~Gl~~~iel~~~~~~~-~~~-------~~~a~~~~~~l~e~Gv 772 (818)
+.+.+.+.+++.+.+.-+. ....++.+.+.+..-.. ..+ ...+..+.+.|+++|+
T Consensus 383 g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~ 462 (511)
T 3vp6_A 383 GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGT 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 0112344556666543222 23445555554321100 000 1124568899999997
Q ss_pred eEee----cC--CEEEEEC-CCCChHHHHHHHHHHHHHHHHH
Q 003466 773 YMRP----LG--NVIYLMC-GPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 773 lv~p----~g--~~ir~~p-pl~~t~edId~~~~~l~~~l~~ 807 (818)
++.. .+ +.+|+.. ...+|++||+++++.|++.-+.
T Consensus 463 ~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 463 TMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp CEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 5542 22 3699988 6778999999999999876544
No 218
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.05 E-value=1.1e-09 Score=125.87 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccceeecchH-------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA------------- 706 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsAvl~~~~------------- 706 (818)
+++|+++|++||++|++|++|. |+--.|... ..+. ..|++ +++|+|+|. ..|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~Gp--~GG~i~~~~~~~~~~~~~~~~~~ 294 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEE
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCccc--cchheeeccchhcccccccchhh
Confidence 8999999999999999999984 321122211 1111 24766 789999752 4566777653
Q ss_pred --HHhhcc----CC---hH--------------HH--------------HHHHHHHHHcCCCeeEEE-ee-eeEEEEEEe
Q 003466 707 --VFDSFV----GD---SK--------------LW--------------DLELIQQISSHRTVQRVV-AL-GTLCAIELQ 747 (818)
Q Consensus 707 --i~~~l~----~~---~~--------------~~--------------~~~l~~~l~~~~~v~~vr-g~-Gl~~~iel~ 747 (818)
+.+.+. .. +. .+ .+.+.+.|.+.+. .-+. +. ..++-+++.
T Consensus 295 ~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~-~v~~~~t~t~lv~vdl~ 373 (490)
T 2a7v_A 295 YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY-SLVSGGTDNHLVLVDLR 373 (490)
T ss_dssp CCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEECT
T ss_pred HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCc-EEecCCCCCeEEEEEeC
Confidence 122111 11 00 00 0112333444332 1111 11 134444443
Q ss_pred cCcccCCCchHHHHHHHHHHHhCCceEee----------cCCEEEEECCC----CChHHHHHHHHHHHHHHHHHH
Q 003466 748 AAGCNAGYGSLYAASLLKKLREDGVYMRP----------LGNVIYLMCGP----CSSPEVCSQLLLKLYQRLEEF 808 (818)
Q Consensus 748 ~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------~g~~ir~~ppl----~~t~edId~~~~~l~~~l~~l 808 (818)
... ..+..+.+.|.+.||.+.. ....||+..|+ .++++|++++++.|.+++...
T Consensus 374 ~~g-------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 374 PKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp TTT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 221 1245577888899999973 13689996654 478999999999999998754
No 219
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.04 E-value=3.7e-09 Score=118.88 Aligned_cols=206 Identities=12% Similarity=-0.024 Sum_probs=121.1
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~---~~~~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.++.-. ++......+...-..+|+++++++++. +.+++ ++||++|+..+++... +.|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all-----~~G- 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGIL-----RPD- 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHC-----CTT-
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhc-----CCC-
Confidence 67888998886422 222222223345678899999999984 45555 8999999999988651 222
Q ss_pred cccccCCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (818)
..||+.++..|+.+...+..+|.. .. .....|. ...+++....+
T Consensus 102 ---------------D~Vl~~~~~~y~~~~~~~~~~g~~--~~-----~l~~~G~-----------~~~~v~~~~~g--- 145 (409)
T 3jzl_A 102 ---------------DELLYITGQPYDTLEEIVGIRKQG--QG-----SLKDFHI-----------GYSSVPLLENG--- 145 (409)
T ss_dssp ---------------CEEEECSSSCCTTHHHHHTSSSSS--SS-----CTGGGTC-----------EEEECCCCTTS---
T ss_pred ---------------CEEEEeCCCCcHhHHHHHhcccch--hh-----HHHHcCC-----------EEEEeCCCCCC---
Confidence 267777634444443222222210 00 0000000 00111110000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHHH
Q 003466 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILV 647 (818)
Q Consensus 572 ~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~Lr 647 (818)
..| .+.+++.+. .++.+|++|+ . .+..|.+. -+++|.
T Consensus 146 --------~~d------------------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~----~l~~I~ 186 (409)
T 3jzl_A 146 --------DVD------------------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIE----KIKEMI 186 (409)
T ss_dssp --------CCC------------------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHH----HHHHHH
T ss_pred --------CcC------------------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCccc----cHHHHH
Confidence 011 255666663 3678999998 6 66667554 499999
Q ss_pred HHHHh--cCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccCCccc-cceeecchHHHhhcc
Q 003466 648 KECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (818)
Q Consensus 648 eLc~~--~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~P-lsAvl~~~~i~~~l~ 712 (818)
++|++ ||+++|+||++. .+..+. +......|++ +++|.+||+..| .|.+++++++++.+.
T Consensus 187 ~la~~~~~~~~livD~a~~-~~~~~~----~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 187 VFVKNINPEVIVFVDNCYG-EFVEYQ----EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp HHHHHHCTTCEEEEECTTC-TTTSSC----CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHhhCCCCEEEEeCCcc-cccccC----CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHH
Confidence 99999 999999999984 322111 1112235776 799999976445 466888888877654
No 220
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.00 E-value=2.2e-08 Score=114.52 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=103.8
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~P 697 (818)
..+++.+ ....|.+.+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. ..
T Consensus 237 ~v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g 309 (475)
T 3k40_A 237 YAVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FD 309 (475)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-Cc
Confidence 3444555 355677665 99999999999999999999965323332222222344 4688765 5877764 35
Q ss_pred cceeecchH-HH-hh-------ccC---------------ChH---------------------------HHHHHHHHHH
Q 003466 698 LAATLATNA-VF-DS-------FVG---------------DSK---------------------------LWDLELIQQI 726 (818)
Q Consensus 698 lsAvl~~~~-i~-~~-------l~~---------------~~~---------------------------~~~~~l~~~l 726 (818)
.|+++++++ .. +. +.. .++ .+.+.+.+.+
T Consensus 310 ~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L 389 (475)
T 3k40_A 310 CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLC 389 (475)
T ss_dssp CEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666543 21 11 100 000 0111234455
Q ss_pred HcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE-ee---cC-CEEEEECCC-CChHHHHHHHHH
Q 003466 727 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMCGP-CSSPEVCSQLLL 799 (818)
Q Consensus 727 ~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv-~p---~g-~~ir~~ppl-~~t~edId~~~~ 799 (818)
++.+.+.-+. ....++.+.+... ......+.++|.++|.+. .+ .| ..+|++... ..|++||+++++
T Consensus 390 ~~~~g~~l~~~~~~~iv~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~ 462 (475)
T 3k40_A 390 VADSRFELAAEINMGLVCFRLKGS-------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462 (475)
T ss_dssp HHSTTEEESSCCBTTEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred hcCCCEEEecCCceEEEEEEeCCc-------hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 5565442211 2234555555332 134678889999888754 33 23 679998754 458999999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|+++++++.
T Consensus 463 ~i~~~~~~~~ 472 (475)
T 3k40_A 463 EVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 221
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.00 E-value=3.1e-09 Score=117.93 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=104.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEEEec--ccccCCcc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--KgLggGy~ 696 (818)
++.+|++... ++..|.+.+ ++++.++ +|+++|+||+++.+.+.- ..+ .+|+++++ |.+|.+.
T Consensus 165 ~~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~~---~~~----~~di~~~s~sK~~~~~g- 228 (398)
T 2fyf_A 165 SVDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLPV---DIA----ETDAYYFAPQKNFASDG- 228 (398)
T ss_dssp TCSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSCC---CGG----GCSEEEECTTSTTCSCS-
T ss_pred CCCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCccc---Ccc----cCcEEEEecCcccCCCC-
Confidence 4567777765 788888876 3334444 999999999996543321 111 27888655 9998651
Q ss_pred ccceeecchHHHhhcc------------------------C---ChH-------------H------HH----------H
Q 003466 697 PLAATLATNAVFDSFV------------------------G---DSK-------------L------WD----------L 720 (818)
Q Consensus 697 PlsAvl~~~~i~~~l~------------------------~---~~~-------------~------~~----------~ 720 (818)
-+|++++++++++.+. . ... . +. +
T Consensus 229 g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 229 GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2678888988866441 0 000 0 10 1
Q ss_pred HHHHHHHcCCCeeEE---E--eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec-----CCEEEEECCCCCh
Q 003466 721 ELIQQISSHRTVQRV---V--ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL-----GNVIYLMCGPCSS 790 (818)
Q Consensus 721 ~l~~~l~~~~~v~~v---r--g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~-----g~~ir~~ppl~~t 790 (818)
.+.+.+++.+.+.-+ . ..+.++.+.+... ..+..+.+.|.++||.+++. ++.+|+.+....|
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t 380 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVE 380 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSC
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCC
Confidence 123344555443222 1 1233677776421 12557889999999999762 3789999998889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~ 807 (818)
++|+++++++|++++++
T Consensus 381 ~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 381 PDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988754
No 222
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=98.93 E-value=7.8e-09 Score=118.55 Aligned_cols=179 Identities=13% Similarity=0.029 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv 680 (818)
+.|++.+.+ .+..+|++ .. .+.+ .+. | +++|+++|++||++||+||+|. |+--.|..- .-++
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~-d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--~p~~- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNL-D---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--SPFE- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCC-C---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC--CGGG-
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcC-C---HHHHHHHHHHcCCEEEEEccchhcccccCCCC--CCCC-
Confidence 567777752 23457777 54 4444 333 3 8999999999999999999985 331112110 0001
Q ss_pred CCcEEE--ecccccCCccccceeecchH---------------HHhhc----c---CChH-------------H------
Q 003466 681 VPDIAC--YGKLLTGGVIPLAATLATNA---------------VFDSF----V---GDSK-------------L------ 717 (818)
Q Consensus 681 ~PDivt--lgKgLggGy~PlsAvl~~~~---------------i~~~l----~---~~~~-------------~------ 717 (818)
..|+++ ++|.|+|. ..|.++++++ +.+.+ . .+.. .
T Consensus 246 ~~div~~s~~K~l~Gp--rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~ 323 (483)
T 1rv3_A 246 HCHVVTTTTHKTLRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 323 (483)
T ss_dssp TCSEEEEESSGGGCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHH
T ss_pred CCcEEEecCcccCCCC--CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhH
Confidence 358875 55999753 5577777764 22211 0 0000 0
Q ss_pred ---------HHHHHHHHHHcCCCeeEEEe-ee-eEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe----ec-----
Q 003466 718 ---------WDLELIQQISSHRTVQRVVA-LG-TLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR----PL----- 777 (818)
Q Consensus 718 ---------~~~~l~~~l~~~~~v~~vrg-~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~----p~----- 777 (818)
..+.+.+.|.+.+. .-+.+ .+ .+.-+.+.... .....+.+.|.+.||.+. |+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~g~-~~~~~~~~~~~~~v~~~~~g-------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~ 395 (483)
T 1rv3_A 324 KEYQRQVVANCRALSAALVELGY-KIVTGGSDNHLILVDLRSKG-------TDGGRAEKVLEACSIACNKNTCPGDKSAL 395 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-EEGGGSCSSSEEEEEGGGGT-------CCHHHHHHHHHHTTEECEEECCSSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-EeccCCCCCceEEEeccCCC-------CCHHHHHHHHHhCCcEEecCCCCCCCcCC
Confidence 00123334444432 11111 11 23334443211 114456777889999998 53
Q ss_pred -CCEEEEECCCCCh----HHHHHHHHHHHHHHHHH
Q 003466 778 -GNVIYLMCGPCSS----PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 778 -g~~ir~~ppl~~t----~edId~~~~~l~~~l~~ 807 (818)
...+|+..+...| ++|+++++++|.++++.
T Consensus 396 ~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 396 RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 2589999987667 99999999999998876
No 223
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=98.93 E-value=1.1e-08 Score=116.40 Aligned_cols=181 Identities=13% Similarity=-0.023 Sum_probs=105.0
Q ss_pred HHHHHHH-hcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCcc-chhccc-
Q 003466 602 SYISQNL-LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL- 678 (818)
Q Consensus 602 ~~Le~~L-~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~-~a~e~~- 678 (818)
+.|++.| .. ....++.+|++.-. ....|.+.+ +++|.++|++||+++++||++.++. .|.. .....+
T Consensus 217 ~~l~~~i~~~----~~~~~~~~vv~~~~-nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~ 286 (456)
T 2z67_A 217 EDIENAIKKE----IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFK 286 (456)
T ss_dssp HHHHHHHHHH----HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hhCCCeEEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhC
Confidence 5566666 31 00124555544432 456777766 9999999999999999999986552 2210 111111
Q ss_pred CCCCcEEEe--cccccCCccccceeec-chHHHhhcc----CC---h-H--------H---------------HHHHHHH
Q 003466 679 GCVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFV----GD---S-K--------L---------------WDLELIQ 724 (818)
Q Consensus 679 gv~PDivtl--gKgLggGy~PlsAvl~-~~~i~~~l~----~~---~-~--------~---------------~~~~l~~ 724 (818)
+ .+|++++ .|.++++ ..+|++++ ++++++.+. +. . . . +.+.+.+
T Consensus 287 ~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~ 364 (456)
T 2z67_A 287 Y-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDE 364 (456)
T ss_dssp S-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 6888765 8976666 56788888 466665432 11 1 0 0 0112233
Q ss_pred HHHcC----CC-eeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCc---eEe------------e-cCCEEEE
Q 003466 725 QISSH----RT-VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV---YMR------------P-LGNVIYL 783 (818)
Q Consensus 725 ~l~~~----~~-v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv---lv~------------p-~g~~ir~ 783 (818)
.|++. +. +.... .++.+.+..+. . ...+.+.|.++|+ -+. . ....+|+
T Consensus 365 ~L~~~~~~~g~~v~~~~---~~v~~~~~~~~-------~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~ 433 (456)
T 2z67_A 365 LLNDLSKKTGGKFLDVE---SPIASCISVNS-------D-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVM 433 (456)
T ss_dssp HHHHHHHHSSCCBCCCC---CSSEEEEECSS-------C-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEE
T ss_pred HHHhcccccCCEecCCC---CeEEEEEeccc-------H-HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhh
Confidence 34433 21 11111 23334442121 0 3467888999986 222 1 1357888
Q ss_pred ECCCCChHHHHHHHHHHHHHHH
Q 003466 784 MCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 784 ~ppl~~t~edId~~~~~l~~~l 805 (818)
+.+..+|++|||+++++|++++
T Consensus 434 s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 434 NAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhcCCCHHHHHHHHHHHHHHh
Confidence 8888899999999999998754
No 224
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.92 E-value=1.5e-08 Score=104.31 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----CCHHH
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL----VNEVP 296 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~----~~~~~ 296 (818)
||+|||++.+++.. ....++...+ .||+|+.....++.++...++.++..+.++.|+|+|++.. ...+.
T Consensus 112 yD~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~ 184 (237)
T 1g3q_A 112 FDFILIDCPAGLQL------DAMSAMLSGE-EALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp CSEEEEECCSSSSH------HHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHHH
T ss_pred CCEEEEECCCCcCH------HHHHHHHHCC-eEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHHH
Confidence 99999999876542 2334444444 5899999999999999999999998889999999999832 34667
Q ss_pred HHHhhcCCCCEEe-cCCCCC
Q 003466 297 LMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 297 l~~~~~~~~pvlg-iP~~~~ 315 (818)
+++.+ +.|+++ ||+.+.
T Consensus 185 ~~~~~--~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 185 AEDVM--EVPLLAVIPEDPA 202 (237)
T ss_dssp HHHHH--CSCEEEEEECCHH
T ss_pred HHHHh--CccceeeCCCChH
Confidence 77777 899999 998654
No 225
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=98.91 E-value=9.8e-08 Score=109.03 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=104.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-CCcEEEe--cccccCCccc
Q 003466 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIP 697 (818)
Q Consensus 621 AAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gKgLggGy~P 697 (818)
+.++.-| ....|.+.+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.+++ .|.++.. +.
T Consensus 238 ~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~ 310 (486)
T 1js3_A 238 FVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FD 310 (486)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cc
Confidence 4445555 455677665 99999999999999999999965432222111111233 3587764 6887765 46
Q ss_pred cceeecchH--HHhhc-------cC-----------------Ch---H---------HH---------------HHHHHH
Q 003466 698 LAATLATNA--VFDSF-------VG-----------------DS---K---------LW---------------DLELIQ 724 (818)
Q Consensus 698 lsAvl~~~~--i~~~l-------~~-----------------~~---~---------~~---------------~~~l~~ 724 (818)
+|+++++++ +.+.+ .. .+ . .+ .+.+.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777888644 22222 11 00 0 00 112334
Q ss_pred HHHcCCCeeEEE-eeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE-ee---cC-CEEEEEC-CCCChHHHHHHH
Q 003466 725 QISSHRTVQRVV-ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM-RP---LG-NVIYLMC-GPCSSPEVCSQL 797 (818)
Q Consensus 725 ~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv-~p---~g-~~ir~~p-pl~~t~edId~~ 797 (818)
.+++.+.+.-+. ..+.++.+.+... ......+.+.|.++|+++ .+ .+ ..+|++. ....|++||+++
T Consensus 391 ~L~~~~~~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~ 463 (486)
T 1js3_A 391 FVLQDPRFEVCAEVTLGLVCFRLKGS-------DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLA 463 (486)
T ss_dssp HHHHCTTEEECSCCCSSEEEEEESSC-------HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHH
T ss_pred HHhcCCCeEEeCCCceeEEEEEecCh-------HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHH
Confidence 455555443221 2344555655321 123567888899889654 32 12 5788885 444689999999
Q ss_pred HHHHHHHHHHHH
Q 003466 798 LLKLYQRLEEFD 809 (818)
Q Consensus 798 ~~~l~~~l~~l~ 809 (818)
+++|.++++++.
T Consensus 464 ~~~l~~~~~~~~ 475 (486)
T 1js3_A 464 WEHIRGLAAELL 475 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 226
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=98.89 E-value=4.9e-08 Score=110.33 Aligned_cols=206 Identities=13% Similarity=0.035 Sum_probs=119.1
Q ss_pred CHHHHHHHHHhhhhccc---ccCCCCCChhHHHHHHHHHhccCCCCCCcEEE---eCChhHHHHHHHHHHHHHhhhcccc
Q 003466 418 QIELARDMGYTAARFGH---VMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~---~~~~~~~~~~~~eLae~L~~~~~~~~l~~v~f---~~SGseA~e~ALklA~r~~t~~~G~ 491 (818)
+++|.+|+.+......+ .....+...-..+|+++++++++. +.+++ ++||++|+..++... -++|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~al-----l~pG- 116 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGN-----LRPN- 116 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHT-----CCTT-
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHh-----cCCC-
Confidence 78899998885432111 111122344578899999999984 45566 799999999988855 1222
Q ss_pred cccccCCCccccccceEEEEEc-CCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhh
Q 003466 492 LVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (818)
Q Consensus 492 ~~~~~~~~~~~~~~r~~II~~~-~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (818)
..||+.+ ..|++.. .+.|...... .......|. ...+++.+ .+
T Consensus 117 ---------------D~Vl~~~~~~y~~~~----~~~g~~~~~~---~~~l~~~G~-----------~~~~v~~~-~~-- 160 (427)
T 3hvy_A 117 ---------------DTMMSICGMPYDTLH----DIIGMDDSKK---VGSLREYGV-----------KYKMVDLK-DG-- 160 (427)
T ss_dssp ---------------CEEEECSSSCCGGGH----HHHTCCTTCC---SCCTGGGTC-----------EEEECCCB-TT--
T ss_pred ---------------CEEEEeCCCCchhHH----HHhccccchh---hhHHHHcCC-----------EEEEecCC-CC--
Confidence 3677777 5555432 1111000000 000000000 00111110 00
Q ss_pred hccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHH
Q 003466 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRIL 646 (818)
Q Consensus 571 ~~~~~~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~L 646 (818)
-.| .+.+++.+.+ ..++.+|++|+ . .+..|.+ .-+++|
T Consensus 161 ---------~~d------------------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v----~dl~~i 202 (427)
T 3hvy_A 161 ---------KVD------------------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRI----AEIAEI 202 (427)
T ss_dssp ---------BCC------------------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCH----HHHHHH
T ss_pred ---------CcC------------------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccH----HHHHHH
Confidence 011 2567777752 14678999999 5 4555544 459999
Q ss_pred HHHHHh--cCCcEEEeecccCcccCC-ccchhcccCCCCcEE--EecccccCCcccc-ceeecchHHHhhcc
Q 003466 647 VKECQN--RKIPVIFDEVFTGFWRLG-VETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (818)
Q Consensus 647 reLc~~--~gilLI~DEV~TGfGRtG-~~~a~e~~gv~PDiv--tlgKgLggGy~Pl-sAvl~~~~i~~~l~ 712 (818)
.++|++ ||+++|+||++..+ ..+ ... .+| .|++ +++|.+||+..|. |.+++++++++.+.
T Consensus 203 ~~ia~~~~~g~~livD~a~~~~-~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~ 268 (427)
T 3hvy_A 203 IKSIREVNENVIVFVDNCYGEF-VEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQAT 268 (427)
T ss_dssp HHHHHHHCSSSEEEEECTTCTT-TSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCcccc-ccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 999999 89999999998433 311 111 123 4766 7999999864454 56778888877553
No 227
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=98.87 E-value=3.2e-08 Score=109.76 Aligned_cols=278 Identities=11% Similarity=0.049 Sum_probs=157.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChhHHHHHHHH-HhccCCCCCCcEEEeCChhHHHHHHHHHHHHHhhhccccccccc
Q 003466 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (818)
Q Consensus 418 hp~V~eAi~~q~~~~~~~~~~~~~~~~~~eLae~L-~~~~~~~~l~~v~f~~SGseA~e~ALklA~r~~t~~~G~~~~~~ 496 (818)
.|++.+|+.+.++..... ...+...+|.+++ +++++. .+.+++++||++|+..|++.+ . -..|
T Consensus 15 ~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l---~-~~~G------ 78 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLK---K-RKKG------ 78 (377)
T ss_dssp GGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHH---S-CTTC------
T ss_pred cHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHc---C-CCCc------
Confidence 478899999888763221 1246788999999 999872 257899999999999998865 0 1122
Q ss_pred CCCccccccceEEEEEcCCCCCCccccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecC-cchhhhhcccc
Q 003466 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEH 575 (818)
Q Consensus 497 ~~~~~~~~~r~~II~~~~sYHG~t~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~ 575 (818)
..||+....|.+ +..++...|... ..+++ |+.+
T Consensus 79 ----------d~Vi~~~~~~~~-~~~~~~~~G~~~----------------------------~~v~~~~~~~------- 112 (377)
T 3ju7_A 79 ----------KYALMPSFTFPA-TPLAAIWCGLEP----------------------------YFIDISIDDW------- 112 (377)
T ss_dssp ----------CEEEEESSSCTH-HHHHHHHTTCEE----------------------------EEECBCTTTC-------
T ss_pred ----------CEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCccC-------
Confidence 367877777765 333333322210 00110 0000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCC
Q 003466 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (818)
Q Consensus 576 ~~~~~nd~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gi 655 (818)
..| .+.+++.+.. . ..++.+|+ |+ . ..|...+ +++|.++|+ ||+
T Consensus 113 ----~~d------------------~~~l~~~i~~----~-~~~tk~v~--~~-~-~~G~~~~----~~~i~~la~-~~~ 156 (377)
T 3ju7_A 113 ----YMD------------------KTVLWDKIEE----L-KEEVAIVV--PY-A-TFGSWMN----LEEYEELEK-KGV 156 (377)
T ss_dssp ----SBC------------------HHHHHHHHHH----H-GGGEEEEC--CB-C-GGGBCCC----CHHHHHHHH-TTC
T ss_pred ----CcC------------------HHHHHHHHhc----C-CCCceEEE--EE-C-CCCCccC----HHHHHHHHh-cCC
Confidence 011 2556666631 0 12366766 43 2 3455544 799999999 999
Q ss_pred cEEEeecccCcccCCccchhccc-CCCCcEEEec----ccccCCccccceeecc-hHHHhhc---cCCh-----------
Q 003466 656 PVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF---VGDS----------- 715 (818)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~-gv~PDivtlg----KgLggGy~PlsAvl~~-~~i~~~l---~~~~----------- 715 (818)
++|.|++|+ +|-. +..... +.-.|+.++| |.+++| ..|+++++ +++++.+ ...+
T Consensus 157 ~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 230 (377)
T 3ju7_A 157 PVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMG 230 (377)
T ss_dssp CBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSC
T ss_pred EEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeecc
Confidence 999999994 5422 212223 2336888776 999876 35566654 5554422 2110
Q ss_pred ---H------------------H------HHHHHHHHHHcCCCe---eEE-Eee---eeEEEEEEecCcccCCCchHHHH
Q 003466 716 ---K------------------L------WDLELIQQISSHRTV---QRV-VAL---GTLCAIELQAAGCNAGYGSLYAA 761 (818)
Q Consensus 716 ---~------------------~------~~~~l~~~l~~~~~v---~~v-rg~---Gl~~~iel~~~~~~~~~~~~~a~ 761 (818)
. . +.+.+.+.|+.++.+ ... .+. -.++.+.+... ....
T Consensus 231 ~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 302 (377)
T 3ju7_A 231 FNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE--------VRNK 302 (377)
T ss_dssp CBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT--------SCHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh--------hhHH
Confidence 0 0 011233444555421 111 010 11223333211 1255
Q ss_pred HHHHHHHhCCceEeec--------------------------CCEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPL--------------------------GNVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~--------------------------g~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+.+.|.++||.++.. ...|++.....+|++|++++++.|.+++..
T Consensus 303 ~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 303 QVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 7889999999988631 135666666678999999999999887754
No 228
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=98.86 E-value=1.1e-07 Score=107.46 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCCcccCCHHHHHHHHHHHHh--cCCcEEEeecccCccc-CCccch
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWR-LGVETT 674 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEP----V~~g~gG~~~~p~~fl~~LreLc~~--~gilLI~DEV~TGfGR-tG~~~a 674 (818)
+.+++.+.+ ..++.+|++|+ . .+..|.+ .-+++|.++|++ ||+++|+||++..+ . .....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i----~dl~~i~~la~~~~~g~~livD~a~~~~-~~~~~p~- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLI----EDIKSIVDCVKNIRKDIICFVDNCYGEF-MDTKEPT- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCH----HHHHHHHHHHHHHCTTSEEEEECTTTTT-SSSSCGG-
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccH----HHHHHHHHHHHHhCCCCEEEEECCCccc-cccCCcc-
Confidence 567777752 14688999998 5 5655644 449999999999 99999999999533 2 11111
Q ss_pred hcccCCCCcEE--EecccccCCccc-cceeecchHHHhhcc
Q 003466 675 ADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (818)
Q Consensus 675 ~e~~gv~PDiv--tlgKgLggGy~P-lsAvl~~~~i~~~l~ 712 (818)
.+| .|++ +++|.+||+.-| .|.+++++++++.+.
T Consensus 232 --~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~ 268 (427)
T 3i16_A 232 --DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTS 268 (427)
T ss_dssp --GGT--CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred --ccC--CeEEEecCcccCCCCCCceEEEEEECHHHHHHHH
Confidence 123 4766 799999875434 466778888887654
No 229
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.84 E-value=4.8e-08 Score=102.28 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (818)
.+.+.+.++.+.+. ||+|||++.+|+.. ....++...+ .||+|+.....++.++...++.
T Consensus 97 ~~~l~~~l~~l~~~-------------yD~viiD~~~~~~~------~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~ 156 (263)
T 1hyq_A 97 PEKLEDVLTQIMES-------------TDILLLDAPAGLER------SAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIV 156 (263)
T ss_dssp HHHHHHHHHHHHHT-------------CSEEEEECCSSSSH------HHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh-------------CCEEEEeCCCCCCh------HHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHH
Confidence 34566666666544 99999999876542 2333444444 7899999998899999999999
Q ss_pred HHhCCCcEEEEEEccCCCCC----HHHHHHhhcCCCCEEe-cCCCCCC
Q 003466 274 LKLRGYDVVAVVFEDHGLVN----EVPLMSYLRNRVPVLV-LPPLPQD 316 (818)
Q Consensus 274 l~~~~~~v~gvi~N~~~~~~----~~~l~~~~~~~~pvlg-iP~~~~~ 316 (818)
++..+.++.|+|+|++.... .+.+.+.+ +.|+++ ||+.+.+
T Consensus 157 l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~~ 202 (263)
T 1hyq_A 157 AERLGTKVLGVVVNRITTLGIEMAKNEIEAIL--EAKVIGLIPEDPEV 202 (263)
T ss_dssp HHHHTCEEEEEEEEEECTTTHHHHHHHHHHHT--TSCEEEEEECCHHH
T ss_pred HHhcCCCeeEEEEccCCcccccchHHHHHHHh--CCCeEEECCCCHHH
Confidence 98888899999999985433 34445555 899999 9986543
No 230
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=98.82 E-value=4.7e-08 Score=117.43 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCceEeecC-CEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPLG-NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~g-~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+.+.|.++||++...+ .++|++++..+|++++++++++|.+..+.++
T Consensus 517 ~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 517 ATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5678889999999998754 8999999999999999999999999887764
No 231
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.77 E-value=3e-07 Score=96.59 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC---------
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG--------- 290 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~--------- 290 (818)
.||+|||++.+|+..+. ...++...--.+|+|+.....++.++..+++.++..++++.|+|+|++.
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccc
Confidence 49999999988764331 1111111112488899999999999999999999889999999999873
Q ss_pred -----CCCHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 291 -----LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 291 -----~~~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
....+.+.+.+ +.|+++ ||+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~--g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKY--NIGFFTSIPIEEE 231 (262)
T ss_dssp ECTTCCCCHHHHHHHT--TCSEEEECCBCHH
T ss_pred cccccccHHHHHHHHc--CCCeEEEeeCchH
Confidence 12356666666 899999 887544
No 232
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=98.74 E-value=4.7e-08 Score=110.16 Aligned_cols=165 Identities=15% Similarity=0.065 Sum_probs=98.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeec-ccCcccCCccchhcccCCCCcEEEe-ccccc----
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV-FTGFWRLGVETTADLLGCVPDIACY-GKLLT---- 692 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV-~TGfGRtG~~~a~e~~gv~PDivtl-gKgLg---- 692 (818)
++++|++... +..|.+.+ +++|.++|++||+++|+|-- + .+|....- ..+ .+|++++ +|.+|
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~-a~g~~~~~---~~~--g~D~~~~s~kk~~~~~~ 263 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPL-SLGVLKPP---GAY--GADIAVGDGQSLGLPMG 263 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTT-GGGTBCCH---HHH--TCSEEEEECTTTTCCCG
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechh-hccCcCCC---ccC--CCCEEEECCcccCCCcc
Confidence 5677777763 55677765 99999999999999996621 2 23322211 223 3788887 47543
Q ss_pred -CCccccceeecchHHHhhccCC-------------------------------h------H------H--HH-------
Q 003466 693 -GGVIPLAATLATNAVFDSFVGD-------------------------------S------K------L--WD------- 719 (818)
Q Consensus 693 -gGy~PlsAvl~~~~i~~~l~~~-------------------------------~------~------~--~~------- 719 (818)
+| .-+|.+++++++.+.+... . . . +.
T Consensus 264 ~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~ 342 (438)
T 1wyu_A 264 FGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGL 342 (438)
T ss_dssp GGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHH
Confidence 22 1356778888776654110 0 0 0 10
Q ss_pred -----------HHHHHHHHcCCCeeEEEee-eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceE--eec----CCEE
Q 003466 720 -----------LELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYM--RPL----GNVI 781 (818)
Q Consensus 720 -----------~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv--~p~----g~~i 781 (818)
+.+.+.|++.+.+. +.+. ..+..+.+... ..+..++++|.++||.+ .+. ++.+
T Consensus 343 ~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~l 413 (438)
T 1wyu_A 343 REVALKSVEMAHKLHALLLEVPGVR-PFTPKPFFNEFALALP--------KDPEAVRRALAERGFHGATPVPREYGENLA 413 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCE-ECSCSSBCSEEEEECS--------SCHHHHHHHHHHTTCCCCEECCTTSCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-ECCCCCeEEEEEEeCC--------CCHHHHHHHHHHCCceeccccccccCCCeE
Confidence 11223344443322 2222 12211222111 12567889999999999 442 4789
Q ss_pred EEECCCCChHHHHHHHHHHHHHHH
Q 003466 782 YLMCGPCSSPEVCSQLLLKLYQRL 805 (818)
Q Consensus 782 r~~ppl~~t~edId~~~~~l~~~l 805 (818)
|+++...+|++|+++++++|++++
T Consensus 414 Ris~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 414 LFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEecccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 233
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.72 E-value=1.9e-07 Score=96.37 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003466 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (818)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (818)
+..+.+.+.++.+.+. ||+|||.+.+++.. ....+....+ -+|+|+.....++..+...+
T Consensus 103 ~~~~~l~~~l~~l~~~-------------yD~viiD~p~~~~~------~~~~~l~~ad-~viiv~~~~~~~~~~~~~~~ 162 (245)
T 3ea0_A 103 IEPERVSDLIHIAASF-------------YDYIIVDFGASIDH------VGVWVLEHLD-ELCIVTTPSLQSLRRAGQLL 162 (245)
T ss_dssp CCHHHHHHHHHHHHHH-------------CSEEEEEEESSCCT------THHHHGGGCS-EEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-------------CCEEEEeCCCCCch------HHHHHHHHCC-EEEEEecCcHHHHHHHHHHH
Confidence 3455666777666555 99999999776522 2333333333 27888888888899999999
Q ss_pred HHHHhCC--CcEEEEEEccCC---CCCHHHHHHhhcCCCCEEe-cCCCC
Q 003466 272 ESLKLRG--YDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPPLP 314 (818)
Q Consensus 272 ~~l~~~~--~~v~gvi~N~~~---~~~~~~l~~~~~~~~pvlg-iP~~~ 314 (818)
+.++..+ ..+.|+|+|++. ....+.+++.+ +.|+++ ||+..
T Consensus 163 ~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~--~~~v~~~ip~~~ 209 (245)
T 3ea0_A 163 KLCKEFEKPISRIEIILNRADTNSRITSDEIEKVI--GRPISKRIPQDE 209 (245)
T ss_dssp HHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH--TSCEEEEECCCH
T ss_pred HHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHh--CCCeEEECCCCh
Confidence 9998766 567999999983 33457788888 999999 99775
No 234
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=98.72 E-value=1.4e-07 Score=102.78 Aligned_cols=161 Identities=10% Similarity=0.006 Sum_probs=98.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCCCCcEE--EecccccC-Cc
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgKgLgg-Gy 695 (818)
++.+|++-.. .+..|....+ ++++ ||+++|+||+|. +|..- ..... . |++ +++|.+|. |
T Consensus 142 ~t~~v~~~~~-~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~~--~~~~~--~--d~~~~s~~K~~g~~G- 203 (362)
T 2c0r_A 142 NAAYLHLTSN-ETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSRP--FDLNQ--F--GLVYAGAQKNLGPSG- 203 (362)
T ss_dssp TEEEEEEESE-ETTTTEECSS---CCCC------TTSCEEEECTTT-TTSSC--CCGGG--C--SEEEEETTTTTCCSS-
T ss_pred CcCEEEEeCC-cCccceeccc---cccc------CCCEEEEEChhh-ccCCc--cchhH--C--cEEEEeccccccCcC-
Confidence 5666666654 6777875332 3333 899999999994 43211 11111 2 765 68999862 3
Q ss_pred cccceeecchHHHhhccCC------------------hH-------------HHH----------------HHHHHHHHc
Q 003466 696 IPLAATLATNAVFDSFVGD------------------SK-------------LWD----------------LELIQQISS 728 (818)
Q Consensus 696 ~PlsAvl~~~~i~~~l~~~------------------~~-------------~~~----------------~~l~~~l~~ 728 (818)
+|.+++++++++.+... .. .+. +.+.+.+++
T Consensus 204 --~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 281 (362)
T 2c0r_A 204 --VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ 281 (362)
T ss_dssp --CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888887655320 00 001 112334455
Q ss_pred CCCeeEE-----EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec---CCEEEEECCCCChHHHHHHHHHH
Q 003466 729 HRTVQRV-----VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL---GNVIYLMCGPCSSPEVCSQLLLK 800 (818)
Q Consensus 729 ~~~v~~v-----rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~---g~~ir~~ppl~~t~edId~~~~~ 800 (818)
++.+..+ ...+.++.+.+... ..+..+++.|.++||.+.++ .+.+|++....+|++|+++++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~ 353 (362)
T 2c0r_A 282 SGGFYRGCVDVDSRSDMNITFRLASE--------ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQF 353 (362)
T ss_dssp STTSSEESSCGGGBCSSEEEEECSCH--------HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred cCCccccCCChHHcCCcEEEEEcCCc--------chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5411011 11233444444211 34667888999999988763 24699999888899999999999
Q ss_pred HHHHHHH
Q 003466 801 LYQRLEE 807 (818)
Q Consensus 801 l~~~l~~ 807 (818)
|++.+++
T Consensus 354 l~~~~~~ 360 (362)
T 2c0r_A 354 MEHFKRS 360 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888754
No 235
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.70 E-value=8.8e-08 Score=96.05 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.+.++.++ ||++||++.+++. .....+....+. +|+|+.....+ ..+...++.+
T Consensus 63 ~~l~~~l~~l~~~-------------yD~viiD~~~~~~------~~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 63 EKDVYGIRKDLAD-------------YDFAIVDGAGSLS------VITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHHHTHHHHTTT-------------SSEEEEECCSSSS------HHHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-------------CCEEEEECCCCCC------HHHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 4555556665444 9999999987652 233344444443 88888888888 8888888888
Q ss_pred HhC-----CCcEEEEEEccCCCC--CHHHHHHhhcC-CCCEE-e-cCCCCC
Q 003466 275 KLR-----GYDVVAVVFEDHGLV--NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (818)
Q Consensus 275 ~~~-----~~~v~gvi~N~~~~~--~~~~l~~~~~~-~~pvl-g-iP~~~~ 315 (818)
+.. +.++ |+|+|++... ..+.+++.++. +.|++ + ||+.+.
T Consensus 122 ~~~~~~~~~~~~-~vv~N~~~~~~~~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 122 LEAQAYSRKVEA-RFLITRKIEMATMLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp HTTSCGGGCCEE-EEEECSBCTTEEEEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHhCCCCcE-EEEEeccCCCchHHHHHHHHHHHcCCceeeccccccHH
Confidence 753 3566 9999998432 12333333332 89998 6 887654
No 236
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.61 E-value=6.5e-07 Score=93.13 Aligned_cols=103 Identities=10% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHHh-ccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH
Q 003466 191 VVGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (818)
Q Consensus 191 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (818)
.+..+.+.+.++.+.+ . ||+|||.+.+|+.. ....+.. .--.||+|+.....++.++..
T Consensus 96 ~~~~~~~~~~l~~l~~~~-------------yD~viiD~p~~~~~------~~~~~l~-~ad~vi~v~~~~~~s~~~~~~ 155 (260)
T 3q9l_A 96 ALTREGVAKVLDDLKAMD-------------FEFIVCDSPAGIET------GALMALY-FADEAIITTNPEVSSVRDSDR 155 (260)
T ss_dssp SSCHHHHHHHHHHHHHTT-------------CSEEEEECCSSSSH------HHHHHHH-TCSEEEEEECSSHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCCCH------HHHHHHH-hCCEEEEEecCChhHHHHHHH
Confidence 3556677777777765 5 99999999775532 1222222 223488999999999999999
Q ss_pred HHHHHHhCCC--------cEEEEEEccCC------CC--CHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 270 AYESLKLRGY--------DVVAVVFEDHG------LV--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 270 ~~~~l~~~~~--------~v~gvi~N~~~------~~--~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.++.++..+. ...|+|+|++. .. ..+.+++.+ ++|+++ ||+.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEIL--RIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHH--CSEEEEEEECCHH
T ss_pred HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHh--CCceEEecCCChh
Confidence 9998876542 47899999972 11 236677777 999999 998765
No 237
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.59 E-value=9.3e-07 Score=94.58 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH
Q 003466 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (818)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (818)
.+.+.+.++.+.+. ||+|||.+..++.+. ....+++..+. +|+|+..+...+.++..+++.
T Consensus 188 ~~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~~-----da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~ 248 (286)
T 3la6_A 188 SERFAELVNWASKN-------------YDLVLIDTPPILAVT-----DAAIVGRHVGT-TLMVARYAVNTLKEVETSLSR 248 (286)
T ss_dssp SHHHHHHHHHHHHH-------------CSEEEEECCCTTTCT-----HHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-------------CCEEEEcCCCCcchH-----HHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHH
Confidence 35666677776655 999999996543321 23445555544 889999999999999999999
Q ss_pred HHhCCCcEEEEEEccCC
Q 003466 274 LKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 274 l~~~~~~v~gvi~N~~~ 290 (818)
++..|.++.|+|+|++.
T Consensus 249 l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 249 FEQNGIPVKGVILNSIF 265 (286)
T ss_dssp HHHTTCCCCEEEEEEEC
T ss_pred HHhCCCCEEEEEEcCcc
Confidence 99999999999999984
No 238
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=98.59 E-value=3.6e-07 Score=103.04 Aligned_cols=172 Identities=9% Similarity=0.086 Sum_probs=99.3
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhcc-cCCCCcE---EEeccc
Q 003466 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDI---ACYGKL 690 (818)
Q Consensus 618 ~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~-~gv~PDi---vtlgKg 690 (818)
.+...++.-+- ++-.|... +.+.+++|.++|+++++++|+||++.||.--+. .+.... .+..+.+ ..|||.
T Consensus 189 ~~~~vll~~~p-~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 266 (420)
T 4h51_A 189 DGSVFILHQCA-HNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKN 266 (420)
T ss_dssp SSCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccc
Confidence 34445565542 77778766 899999999999999999999999999953322 111111 1112222 379997
Q ss_pred cc-CCccccceeecchHHHh-------hc-------cCC--hH----------------HHH--------------HHHH
Q 003466 691 LT-GGVIPLAATLATNAVFD-------SF-------VGD--SK----------------LWD--------------LELI 723 (818)
Q Consensus 691 Lg-gGy~PlsAvl~~~~i~~-------~l-------~~~--~~----------------~~~--------------~~l~ 723 (818)
++ -| .-+|++++..+..+ .+ ... .. .|. +.+.
T Consensus 267 ~~~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 267 MGLYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp SCCGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 24 56777665322111 11 000 00 111 1223
Q ss_pred HHHHcCCCeeE----EEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecCCEEEEECCCCChHHHHHHHHH
Q 003466 724 QQISSHRTVQR----VVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLL 799 (818)
Q Consensus 724 ~~l~~~~~v~~----vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~~ir~~ppl~~t~edId~~~~ 799 (818)
+.|++.....+ ....|++.-+.+.. +.++.|.++||++.++| ||... .++++.|+++++
T Consensus 346 ~~L~~~g~~~~~~~i~~q~GmF~~~gls~-------------e~v~~L~e~~Vy~~~~g---Ris~A-gl~~~ni~~~a~ 408 (420)
T 4h51_A 346 DELLRLQTPGSWEHVINQIGMFSFLGLSK-------------AQCEYCQNHNIFITVSG---RANMA-GLTHETALMLAQ 408 (420)
T ss_dssp HHHHHTTCSSCCTHHHHCCSSEEECCCCH-------------HHHHHHHHTTEECCTTC---EEEGG-GCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCeecCCCceEEecCcCH-------------HHHHHHHhCCEEEcCCC---EEEec-cCCHHHHHHHHH
Confidence 34444332111 22346543222211 23467889999998866 55553 378899999999
Q ss_pred HHHHHHHHHH
Q 003466 800 KLYQRLEEFD 809 (818)
Q Consensus 800 ~l~~~l~~l~ 809 (818)
+|.++++++.
T Consensus 409 aI~~vvr~i~ 418 (420)
T 4h51_A 409 TINDAVRNVN 418 (420)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 239
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=98.54 E-value=1.1e-06 Score=98.55 Aligned_cols=181 Identities=12% Similarity=0.125 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCc---cchhccc
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~---~~a~e~~ 678 (818)
+.+++.+.+ ..+..++++-|-.++-.|... +.+.+++|.++|++||+++|.||++.+|...+. ......+
T Consensus 162 ~~l~~~l~~------~~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~ 234 (405)
T 3k7y_A 162 DLFLNDLRN------IPNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKF 234 (405)
T ss_dssp HHHHHHHHH------SCSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHH
T ss_pred HHHHHHHHh------CCCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHH
Confidence 556666653 123346666542367788766 899999999999999999999999998843221 1111111
Q ss_pred -CCCCcE---EEeccccc-CCccccceeec---chHHHhhcc------------CC-hH-------H---------HHH-
Q 003466 679 -GCVPDI---ACYGKLLT-GGVIPLAATLA---TNAVFDSFV------------GD-SK-------L---------WDL- 720 (818)
Q Consensus 679 -gv~PDi---vtlgKgLg-gGy~PlsAvl~---~~~i~~~l~------------~~-~~-------~---------~~~- 720 (818)
...+.+ -+|||.++ .| +-+|.+++ ++++++.+. .. .. . |.+
T Consensus 235 ~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~ 313 (405)
T 3k7y_A 235 EEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKE 313 (405)
T ss_dssp HTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222333 38999998 67 68888643 454433221 00 00 0 111
Q ss_pred -------------HHHHHHH----cCCC---eeEEEeeeeEEEE-EEecCcccCCCchHHHHHHHHHHHhCCceEeecCC
Q 003466 721 -------------ELIQQIS----SHRT---VQRVVALGTLCAI-ELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGN 779 (818)
Q Consensus 721 -------------~l~~~l~----~~~~---v~~vrg~Gl~~~i-el~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g~ 779 (818)
.+.+.|+ +++. ...+...|-|+.+ .+.. .++.+|.++||++.|++
T Consensus 314 l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L~~~gV~v~p~~- 379 (405)
T 3k7y_A 314 LSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHLKTHHIYIINNG- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTTTTTTEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHHHHCCEeecCCC-
Confidence 1223344 4432 1112233443322 1111 23455678899999976
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 780 VIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 780 ~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
||+.. ..++++|++++++|.+++++
T Consensus 380 --Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 --RINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp --EEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred --eEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 55553 35678999999999998764
No 240
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.53 E-value=6e-07 Score=96.61 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+.++ ||+|||+++.++.+ ....++...--.+|+|+..+...+.++..+++.+
T Consensus 201 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~------~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDH-------------YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTC------THHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEcCCCCchh------HHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 4566666666655 99999999876543 1222333333458899999999999999999999
Q ss_pred HhCCCcEEEEEEccCC
Q 003466 275 KLRGYDVVAVVFEDHG 290 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~ 290 (818)
+..+.++.|+|+|++.
T Consensus 262 ~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 262 EQAGVNIKGAILNGVI 277 (299)
T ss_dssp HHTTCCCCCEEEEECC
T ss_pred HhCCCCeEEEEEeCCc
Confidence 9999999999999983
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.51 E-value=1.1e-06 Score=93.18 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
+.+.+.++.+.++ ||+|||.+..++.+. ....+++..+ -+|+|+..+...+.++..+++.+
T Consensus 179 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~~-----d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l 239 (271)
T 3bfv_A 179 RAFANLYDTLLMN-------------YNFVIIDTPPVNTVT-----DAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELI 239 (271)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTCS-----HHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEeCCCCchHH-----HHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHH
Confidence 4556666666555 999999997654332 2344555555 48999999999999999999999
Q ss_pred HhCCCcEEEEEEccCCC
Q 003466 275 KLRGYDVVAVVFEDHGL 291 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~~ 291 (818)
+..+.++.|+|+|++..
T Consensus 240 ~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 240 EATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HTTTCEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEeCCcC
Confidence 99899999999999843
No 242
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.44 E-value=2.6e-07 Score=106.41 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCeEEEE-eCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 37 ~~~~~i~-gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
+|.|||+ ||.|++||++++++|||.|. ++|++|.+||+-
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~~ 42 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKLD 42 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeecc
Confidence 5789999 99999999999999999994 999999999984
No 243
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.42 E-value=1.3e-06 Score=93.90 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=61.1
Q ss_pred CCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCC-CC
Q 003466 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGL-VN 293 (818)
Q Consensus 219 ~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~-~~ 293 (818)
..||+|||.+.+++..+. ...++...+ -||+|+.....++..+...++.++. .++++.|+|+|++.. ..
T Consensus 155 ~~yD~ViiD~p~~~~~~~-----~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGG-----FAAPLQHAD-QAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATDE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCGG-----GGGGGGTCS-EEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCHH
T ss_pred ccCCEEEEeCCCccchHH-----HHHHHHHCC-EEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcHHH
Confidence 359999999966544331 111222222 2888888888888888888888875 467889999999943 23
Q ss_pred HHHHHHhhcCCCCEEe-cCCCCC
Q 003466 294 EVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.+.+.+.+ ++|+++ ||+.+.
T Consensus 229 ~~~~~~~~--g~~v~~~Ip~~~~ 249 (307)
T 3end_A 229 VDRFCKET--NFRRLAHMPDLDA 249 (307)
T ss_dssp HHHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHHc--CCCceeeCCccHH
Confidence 34444555 999999 998654
No 244
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.41 E-value=2.9e-06 Score=102.53 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCceEeec-CCEEEEECCCCChHHHHHHHHHHHHHHHHHHH
Q 003466 760 AASLLKKLREDGVYMRPL-GNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFD 809 (818)
Q Consensus 760 a~~~~~~l~e~Gvlv~p~-g~~ir~~ppl~~t~edId~~~~~l~~~l~~l~ 809 (818)
+..+.+.|.++||.+... .+.+++..+...|++++++++++|.+..+.++
T Consensus 556 ~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 556 AALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp HHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 456778888999998754 48899999999999999999999988876653
No 245
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.39 E-value=1.2e-06 Score=91.84 Aligned_cols=90 Identities=6% Similarity=-0.094 Sum_probs=56.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCC--cEEEEEEccCC-CCCHHH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY--DVVAVVFEDHG-LVNEVP 296 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~--~v~gvi~N~~~-~~~~~~ 296 (818)
.||+|||.+..++.. .........+ -||+|+.....++..+...++.++..+. ++ ++|+|++. ......
T Consensus 144 ~yD~viiD~pp~~~~------~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~~~~~~ 215 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV------TLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKNRTHKT 215 (267)
T ss_dssp TCSEEEEEECSSCSH------HHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTTCSCCH
T ss_pred CCCEEEEECcCCccH------HHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCcchHHH
Confidence 399999999765421 1222222222 3778888888888888888888886643 44 69999982 222334
Q ss_pred HHHhhcCCCCEEe-cCCCCCCC
Q 003466 297 LMSYLRNRVPVLV-LPPLPQDS 317 (818)
Q Consensus 297 l~~~~~~~~pvlg-iP~~~~~~ 317 (818)
+.+.++.+.|+++ ||+.+.+.
T Consensus 216 ~~~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 216 LFEILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHHHTTSTTEEEEEEC-----
T ss_pred HHHHHhcCcccceecCcHHHHH
Confidence 4455544789999 99987765
No 246
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=98.37 E-value=9.9e-07 Score=105.39 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHhccCCCCCCcEEEeCCh-hHHHHHHHHHHHHHhhhcccccccccCCCccccccceEEEEEcCCCCCCc
Q 003466 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (818)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~l~~v~f~~SG-seA~e~ALklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~~sYHG~t 520 (818)
..+..++++++++++|. ++++|+++| +.||.+++... .++.+.|..+...|.+.
T Consensus 194 ~g~i~eaE~~lA~~fGa---~~a~~v~nGts~An~~ai~al----------------------~~pGD~VLv~r~~H~S~ 248 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNA---DRSYMVTNGTSTANKIVGMYS----------------------APAGSTILIDRNCHKSL 248 (715)
T ss_dssp BTHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHH----------------------CCTTCEEEEESSCCHHH
T ss_pred cHHHHHHHHHHHHHhCC---CCceEECcHHHHHHHHHHHHh----------------------CCCCCEEEECCCccHHH
Confidence 45788999999999984 688888888 59998888866 12234566777788888
Q ss_pred cccccccCCCCCCCcCCCCcccCCCcccCCCcccccCcceeecCcchhhhhcccccccccc-CccchhhcccCchhHHHH
Q 003466 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASI 599 (818)
Q Consensus 521 ~~als~tg~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~n-d~~~~~~~~~~~~~~~~~ 599 (818)
..++.++|.....- ++. . + .+.+ + ++ +. ..+ |
T Consensus 249 ~~~l~lsGa~pv~v--------------~~~-~---~-~~gi--~--------------~~i~~-~~~----d------- 281 (715)
T 3n75_A 249 THLMMMSDVTPIYF--------------RPT-R---N-AYGI--L--------------GGIPQ-SEF----Q------- 281 (715)
T ss_dssp HHHHHHSCCEEEEE--------------CCC-B---C-TTCC--B--------------CCCCG-GGG----S-------
T ss_pred HHHHHHcCCEEEEE--------------ecc-c---c-cccc--c--------------cCccc-ccC----C-------
Confidence 88777776432110 000 0 0 0000 0 00 00 000 0
Q ss_pred HHHHHHHHHhcCCCCCCCC-c--EEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccch-h
Q 003466 600 YSSYISQNLLQNPGLKVSG-C--IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A 675 (818)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~-~--iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a-~ 675 (818)
.+.|++.|++. ++ + .+.|++.| +..|.+.+ +++|.++|++++ +|+||+|.+.-..|..+. .
T Consensus 282 -~e~Le~~l~~~-----~~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~ 346 (715)
T 3n75_A 282 -HATIAKRVKET-----PNATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK 346 (715)
T ss_dssp -HHHHHHHHHHS-----TTCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTS
T ss_pred -HHHHHHHHhhC-----cCccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccc
Confidence 25677788641 21 1 15677777 34677776 889999998774 799999963212333321 1
Q ss_pred c--ccCCCCcEE-----EecccccC
Q 003466 676 D--LLGCVPDIA-----CYGKLLTG 693 (818)
Q Consensus 676 e--~~gv~PDiv-----tlgKgLgg 693 (818)
. ..|..+|++ +++|+|+|
T Consensus 347 ~al~~g~~aD~vii~~~S~hKtL~g 371 (715)
T 3n75_A 347 CGMSGGRVEGKVIYETQSTHKLLAA 371 (715)
T ss_dssp STTSSSCCTTCEEEEEECHHHHSSC
T ss_pred cccccCcCCCEEEEEEecccccccC
Confidence 1 122236753 68999886
No 247
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.35 E-value=1.3e-06 Score=100.89 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCeEEEE-eCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 36 SHPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 36 ~~~~~~i~-gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
|+|.|||+ ||.|++||++++++|||.|+ ++|++|.+||+-
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~~ 51 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKID 51 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEEE
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeecc
Confidence 56899999 99999999999999999994 999999999983
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.28 E-value=1.5e-05 Score=89.88 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++|+|. +|+||||++..|+.+|. ++|++|..+.
T Consensus 100 p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 457899998 99999999999999994 7899998876
No 249
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=98.27 E-value=3e-06 Score=93.16 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C----------H---HHHHHhhcCCCCEEe-cCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------E---VPLMSYLRNRVPVLV-LPPL 313 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~----------~---~~l~~~~~~~~pvlg-iP~~ 313 (818)
..+++|+.....++.++..+++.++..|+++.|||+|++... . . +.+.+.+ +.+.++ ||+.
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~l~~iPl~ 315 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKF--GDKVIAYVPLL 315 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHS--TTSEEEEEECC
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 448999999999999999999999999999999999998322 1 1 1222233 788888 9998
Q ss_pred CCC
Q 003466 314 PQD 316 (818)
Q Consensus 314 ~~~ 316 (818)
+..
T Consensus 316 ~~e 318 (349)
T 3ug7_A 316 RTE 318 (349)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
No 250
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.24 E-value=6.7e-07 Score=105.08 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCCCCc----------------CCCCCchhhHhhhC----CCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 003466 220 MEILCIVETAGGVASP----------------GPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (818)
Q Consensus 220 ~~d~vivEGagg~~~p----------------~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (818)
.||+|||+++++..++ ..+.....++...+ ...+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4999999999874321 00000123333333 257999999999999999999999999999
Q ss_pred cEEEEEEccCCCC---C--------------HHHHHHhhcCCCCEEecCCCCCC
Q 003466 280 DVVAVVFEDHGLV---N--------------EVPLMSYLRNRVPVLVLPPLPQD 316 (818)
Q Consensus 280 ~v~gvi~N~~~~~---~--------------~~~l~~~~~~~~pvlgiP~~~~~ 316 (818)
++.|||+|++... . .+.|++.+ +.||.-||+++..
T Consensus 520 ~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~iP~~~~e 571 (589)
T 1ihu_A 520 HPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH--ASRVALVPVLASE 571 (589)
T ss_dssp CCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT--CSSEEEEECCSSC
T ss_pred CCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc--CCcEEEccCCCCC
Confidence 9999999998322 1 22233334 7788339998763
No 251
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.22 E-value=1.9e-06 Score=93.73 Aligned_cols=64 Identities=13% Similarity=0.003 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--C--------------HHHHHHhhcCCCCEEe-cCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N--------------EVPLMSYLRNRVPVLV-LPPL 313 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~--~--------------~~~l~~~~~~~~pvlg-iP~~ 313 (818)
..+|+|+.....++.++..+++.++..|+++.|||+|++... . .+.+.+.+ +.+.++ ||+.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKF--SDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHT--TTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 468999999999999999999999999999999999998322 1 11222333 666777 9987
Q ss_pred CCC
Q 003466 314 PQD 316 (818)
Q Consensus 314 ~~~ 316 (818)
+..
T Consensus 301 ~~e 303 (324)
T 3zq6_A 301 KKE 303 (324)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
No 252
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.18 E-value=6.8e-06 Score=85.89 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=56.7
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCCC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~~ 293 (818)
.||+|||.+.+++... ........+ .||+|+.....++.++...++.++. .++++.|+|+|++....
T Consensus 111 ~yD~iiiD~pp~~~~~------~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL------TLNALAAAE-GVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TCSEEEEECCSSCCHH------HHHHHHHCS-EEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred CCCEEEEeCCCCCCHH------HHHHHHHCC-eEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 4999999998765322 222333322 4888888888887776666555542 36788999999984322
Q ss_pred ------HHHHHHhhcCCCCEE-e-cCCCCC
Q 003466 294 ------EVPLMSYLRNRVPVL-V-LPPLPQ 315 (818)
Q Consensus 294 ------~~~l~~~~~~~~pvl-g-iP~~~~ 315 (818)
.+.+++.+ +.|++ + ||+...
T Consensus 184 ~~~~~~~~~l~~~~--~~~~~~~~Ip~~~~ 211 (257)
T 1wcv_1 184 LLAQQVEAQLRAHF--GEKVFWTVIPRNVR 211 (257)
T ss_dssp SHHHHHHHHHHHHH--GGGBCSCCCBCCHH
T ss_pred HHHHHHHHHHHHHc--cccccCccCCCcHH
Confidence 23455555 78876 6 886543
No 253
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.17 E-value=5.2e-06 Score=85.35 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=68.4
Q ss_pred HHHHHHHHH-HhccccccccccccCCCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003466 196 KVIETLGKC-LRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (818)
Q Consensus 196 ~i~~~~~~~-~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (818)
.+.+.++.+ .+. ||+|||.+.+++.. ....+....+ -||+|+.....++..+....+.+
T Consensus 119 ~l~~~l~~l~~~~-------------yD~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~ 178 (254)
T 3kjh_A 119 FLGSVVSALFLDK-------------KEAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLA 178 (254)
T ss_dssp HHHHHHHHHHHTC-------------CSEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-------------CCEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHH
Confidence 466666666 433 99999999775533 1222222222 37888888888888888888888
Q ss_pred HhCCCcEEEEEEccCC-CCCHHHHHHhhcCCCCEEe-cCCCCC
Q 003466 275 KLRGYDVVAVVFEDHG-LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 275 ~~~~~~v~gvi~N~~~-~~~~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
...++...++|+|++. ....+.+++.+. +.++.+ ||+.+.
T Consensus 179 ~~~~~~~~~~v~N~~~~~~~~~~~~~~~~-~~~~~~~Ip~~~~ 220 (254)
T 3kjh_A 179 GDLGIKKVRYVINKVRNIKEEKLIKKHLP-EDKILGIIPYNEL 220 (254)
T ss_dssp HHHTCSCEEEEEEEECCHHHHHHHHHHSC-GGGEEEEEECCHH
T ss_pred HHcCCccEEEEEeCCCChhHHHHHHHHhc-CCcccccccCcHH
Confidence 8888888999999984 233455666662 388999 998643
No 254
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.17 E-value=2.8e-05 Score=84.67 Aligned_cols=38 Identities=13% Similarity=-0.031 Sum_probs=36.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+++|+.....++.++..+++.++..|+++.|+|+|++.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLL 261 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 99999999999999999999999999999999999984
No 255
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=98.11 E-value=3.3e-05 Score=87.06 Aligned_cols=196 Identities=11% Similarity=0.038 Sum_probs=112.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcc--cC
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--LG 679 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~--~g 679 (818)
+.+++.|++ .+.+.+++|++.|-. -.++...+ +++|.++|++||+++++||+|-+.-+....+..+. +|
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt~-y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTSC-FAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECSC-CTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCCC-CCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 667788874 234788999888742 22333333 99999999999999999999944322222211122 34
Q ss_pred CCCcEEEecccccCCccccceeec---chHHHhhccC-------ChH----------------------------HHHHH
Q 003466 680 CVPDIACYGKLLTGGVIPLAATLA---TNAVFDSFVG-------DSK----------------------------LWDLE 721 (818)
Q Consensus 680 v~PDivtlgKgLggGy~PlsAvl~---~~~i~~~l~~-------~~~----------------------------~~~~~ 721 (818)
..|+++.|=== .++.|++..++ ++++++.+.. .+. ++.++
T Consensus 274 -rAD~vVqS~HK-~llvpIGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~ 351 (501)
T 3hl2_A 274 -RIDAFVQSLDK-NFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQ 351 (501)
T ss_dssp -CCCEEEEEHHH-HHCCCSSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEecccc-cceeecCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58998876200 13556555332 4555554321 111 11111
Q ss_pred HHHHHHcCC-CeeEEEeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEe---e--------------cC-----
Q 003466 722 LIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMR---P--------------LG----- 778 (818)
Q Consensus 722 l~~~l~~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~---p--------------~g----- 778 (818)
+.+....++ .+-+....-.-+++.+...... .......+...|+.++|--. + .|
T Consensus 352 L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~---~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~ 428 (501)
T 3hl2_A 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEH---RDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNN 428 (501)
T ss_dssp HHHHHHTTTCCBCCCTTCSSEEEEECTTSCTT---TSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSC
T ss_pred HHHHHHhcChhhcCCCCCceeEEEeccccccc---ccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCC
Confidence 222222233 2334444455566666443111 11234567777887766321 1 01
Q ss_pred ---CEEEEECCCCChHHHHHHHHHHHHHHHHHHHHh
Q 003466 779 ---NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKV 811 (818)
Q Consensus 779 ---~~ir~~ppl~~t~edId~~~~~l~~~l~~l~~~ 811 (818)
+-+......-++++|||.++++|++++.++.+.
T Consensus 429 ~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 429 YPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp CSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777899999999999999999988643
No 256
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=98.08 E-value=9.2e-06 Score=85.08 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~-~~ 294 (818)
.||+|||.+.+++.. +.....++...---||+|+.....++..+...++.++. .+.++.|+|+|++... ..
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 499999999765422 11222233333345889999888888887776666653 2577899999998322 22
Q ss_pred ---HHHHHhhcCCCCEEe-cCCCCC
Q 003466 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 295 ---~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
+.+.+.+ +.|+++ ||+.+.
T Consensus 191 ~~~~~l~~~~--~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHHHHc--CCcccccCCCCcH
Confidence 3344445 899999 997754
No 257
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=98.05 E-value=8e-06 Score=86.92 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|++.|.|+++..|+||||+|+.|..+|. ++|++|..+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 4568999999999999999999999994 7899999876
No 258
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.02 E-value=6.4e-05 Score=76.19 Aligned_cols=88 Identities=7% Similarity=-0.022 Sum_probs=59.8
Q ss_pred CCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCCCC---HHH
Q 003466 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EVP 296 (818)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~N~~~~~~---~~~ 296 (818)
||++||.+.+++..+ ....+....+ -||+|+.....++..+...++.++. .+.+ .++|+|++.... .+.
T Consensus 68 yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHHH
T ss_pred CCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHHH
Confidence 999999998763322 2223333333 3778888888899999999999887 4566 789999994432 233
Q ss_pred HHHhhcC-CCCEE-e-cCCCCC
Q 003466 297 LMSYLRN-RVPVL-V-LPPLPQ 315 (818)
Q Consensus 297 l~~~~~~-~~pvl-g-iP~~~~ 315 (818)
+.+.++. ++|++ + ||+.+.
T Consensus 141 ~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 141 ARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHcCCchhhccCCCcHH
Confidence 4443332 88988 6 887654
No 259
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=98.00 E-value=3.4e-05 Score=81.89 Aligned_cols=90 Identities=9% Similarity=0.074 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCC--
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVN-- 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~-- 293 (818)
.||+|||.+.|++.. +.....++...---||+|+.....++..+...++.++. .+.++.|+|+|++....
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 499999999765421 11111222222223788888887788777666666653 36789999999984332
Q ss_pred --HHHHHHhhcCCCCEEe-cCCCCC
Q 003466 294 --EVPLMSYLRNRVPVLV-LPPLPQ 315 (818)
Q Consensus 294 --~~~l~~~~~~~~pvlg-iP~~~~ 315 (818)
.+.+.+.+ +.|+++ ||+.+.
T Consensus 194 ~~~~~l~~~~--g~~~l~~Ip~~~~ 216 (289)
T 2afh_E 194 ELIIALANKL--GTQMIHFVPRDNV 216 (289)
T ss_dssp HHHHHHHHHH--TSCEEEEECCCHH
T ss_pred HHHHHHHHHc--CccccccCCCchh
Confidence 22334444 899999 997654
No 260
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=97.99 E-value=0.00011 Score=82.97 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHHhcCCcEEEeecccCcccCCccchhcccCC-
Q 003466 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (818)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (818)
+.++++|++. +.+.+++|++-|- ....|...+ +++|.++|++||++|++||++-++-+....+..+.+..
T Consensus 185 ~~le~aI~~~----~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 185 KAVEAKIQEL----GPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp HHHHHHHHHH----CGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhc----CCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 6788888741 2257889999886 232344444 99999999999999999999954323221111111222
Q ss_pred CCcEEEec--cccc
Q 003466 681 VPDIACYG--KLLT 692 (818)
Q Consensus 681 ~PDivtlg--KgLg 692 (818)
..|+++++ |-+.
T Consensus 256 ~AD~~v~S~HK~l~ 269 (450)
T 3bc8_A 256 RIDAFVQSLDKNFM 269 (450)
T ss_dssp CCCEEEEEHHHHHS
T ss_pred CCCEEEECCccCCC
Confidence 47888776 5443
No 261
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.98 E-value=0.00012 Score=82.74 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (818)
.+.++|+|. +|+||||+++.|+.+|. ++ |++|..+.
T Consensus 100 ~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 457888886 89999999999999994 66 99999876
No 262
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.94 E-value=4.3e-05 Score=89.68 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=36.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+|+|+.....++.++..+++.++..|+++.|+|+|++.
T Consensus 201 vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 201 LVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred EEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 89999999999999999999999999999999999984
No 263
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=97.89 E-value=8.7e-05 Score=82.35 Aligned_cols=65 Identities=14% Similarity=-0.072 Sum_probs=46.3
Q ss_pred eeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 739 GTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 739 Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
+.++.|.+.... ++......+...+.++||.++++. ..+|++.....|++|||.++++|++.+++
T Consensus 307 ~~ivsf~~~~~~----~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAK----GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTT----CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCC----CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 345667664321 111222457778889999987641 46999999899999999999999988754
No 264
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=97.86 E-value=5.3e-05 Score=84.34 Aligned_cols=47 Identities=9% Similarity=-0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 761 ASLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 761 ~~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
..+...|.++||.++.+. ..+|++.....|++|||++++.|++..++
T Consensus 335 ~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 335 KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 356667889999987631 45999998889999999999999887654
No 265
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.79 E-value=4.7e-05 Score=81.07 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=54.2
Q ss_pred CCCEEEEeCCCCCCCcCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCCC
Q 003466 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLVN 293 (818)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~~ 293 (818)
.||+|||.+.+++.... ..-+ ... --||+|+.....++..+...++.++. .++++.|+|+|++....
T Consensus 154 ~yD~IiiD~pp~~~~~~-----~~~l-~~a-D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT-----NNAI-VAS-DYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHHH-----HHHH-HHC-SEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHHH-----HHHH-HHC-CeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 39999999977653321 1112 121 23778888888888887777777654 37889999999985433
Q ss_pred ---HHHHHHhhcC-CC--CEEe--cCCCC
Q 003466 294 ---EVPLMSYLRN-RV--PVLV--LPPLP 314 (818)
Q Consensus 294 ---~~~l~~~~~~-~~--pvlg--iP~~~ 314 (818)
.+.+++..+. +. |++. ||+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~ 255 (298)
T 2oze_A 227 ATIKSNLEELYKQHKEDNLVFQNIIKRSN 255 (298)
T ss_dssp HHHHHHHHHHHHHTTTTCCBCSSCEECCH
T ss_pred HHHHHHHHHHHHHhccccccccccccccH
Confidence 2233332221 43 6664 67554
No 266
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=97.73 E-value=0.00011 Score=81.36 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=89.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHHh-cC--CcEEEeecccCcccCCccchhcccCCCCcEEEeccccc-CC
Q 003466 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GG 694 (818)
Q Consensus 619 ~iAAVIvEPV~~g~gG~~~~p~~fl~~LreLc~~-~g--ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgKgLg-gG 694 (818)
++.+|++... ++..|.+.. +||++ |+ +++|.||++. ++.. .... ...+..--+.+|||.+| .|
T Consensus 157 ~~k~v~l~~p-~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~-~~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 157 GPYIELVTSP-NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPIT-RRQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp SCEEEEEESS-CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCC-CCBCCSEEEEEHHHHHSCGG
T ss_pred CCEEEEECCC-CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Cccc-cCCCCeEEEEechhhcCCCc
Confidence 3455555432 677787763 23444 66 9999999995 3211 1111 11222222348999987 56
Q ss_pred ccccceeec-chHHHhhccCCh--------H--------HHH---------------------------HHHHHHHHcCC
Q 003466 695 VIPLAATLA-TNAVFDSFVGDS--------K--------LWD---------------------------LELIQQISSHR 730 (818)
Q Consensus 695 y~PlsAvl~-~~~i~~~l~~~~--------~--------~~~---------------------------~~l~~~l~~~~ 730 (818)
+-+|.+++ ++++++.+.... . .+. +.+.+.|++++
T Consensus 224 -lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 302 (391)
T 3bwn_A 224 -SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD 302 (391)
T ss_dssp -GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred -cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67788886 778766443210 0 111 11233445554
Q ss_pred CeeEE--------------EeeeeEEEEEEecCcccCCCchHHHHHHHHHHHhCCceEeec------CCEEEEECCCCCh
Q 003466 731 TVQRV--------------VALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL------GNVIYLMCGPCSS 790 (818)
Q Consensus 731 ~v~~v--------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p~------g~~ir~~ppl~~t 790 (818)
.+.-. ...|+++-+.+... ..+.+.|.++||.+.|+ .+.+|++.. .+
T Consensus 303 ~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----------~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~ 369 (391)
T 3bwn_A 303 AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----------TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SR 369 (391)
T ss_dssp SEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----------CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SC
T ss_pred CcccccCCccccccccccCCCcceEEEecCCcH-----------HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CC
Confidence 32111 12233444555321 13456677899999983 368999887 38
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003466 791 PEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 791 ~edId~~~~~l~~~l~~ 807 (818)
++++++++++|.+++++
T Consensus 370 ~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 370 EDVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999887654
No 267
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.72 E-value=0.00013 Score=80.86 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCCEEecCCCCCC
Q 003466 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (818)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgiP~~~~~ 316 (818)
.-++||+....-++..+..+++.++..|+++.|+|+|+ ++..+.|++.+. ++||..||..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F~-~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEFT-PLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGST-TSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhcC-CCceEECCCCChh
Confidence 45899999999999999999999999999999999999 333334444443 8999889987664
No 268
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=97.71 E-value=0.0013 Score=72.44 Aligned_cols=46 Identities=11% Similarity=-0.088 Sum_probs=38.5
Q ss_pred HHHHHHHhCCceEeecC---CEEEEECCCCChHHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLREDGVYMRPLG---NVIYLMCGPCSSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 762 ~~~~~l~e~Gvlv~p~g---~~ir~~ppl~~t~edId~~~~~l~~~l~~ 807 (818)
.+...|.++||.++++. ..+|+.+....|++|||+++++|++..++
T Consensus 311 ~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 311 LFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 57788889999987641 46999999889999999999999887654
No 269
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.66 E-value=0.0005 Score=77.30 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. .+|.+|..+.
T Consensus 97 ~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 3456888887 89999999999999994 6788988876
No 270
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.49 E-value=0.0012 Score=72.47 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=36.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003466 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (818)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (818)
+|+|+.....++.++...++.++..|+++.|+|+|++.
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 89999999999999999999999999999999999985
No 271
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.49 E-value=0.0017 Score=70.72 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=48.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CC---CH--------------HHHHHhhcCC-CCEEecCC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---NE--------------VPLMSYLRNR-VPVLVLPP 312 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~---~~--------------~~l~~~~~~~-~pvlgiP~ 312 (818)
-+++|+....-.+..+..+++.++..|+++.|||+|++. +. .. +.+.+.+. + +|+.-||+
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~~pl 302 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYD-EEFNVVKMPL 302 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhcc-CCCCEEEecC
Confidence 389999999999999999999999999999999999973 21 21 12222221 5 89888998
Q ss_pred CCC
Q 003466 313 LPQ 315 (818)
Q Consensus 313 ~~~ 315 (818)
.+.
T Consensus 303 ~~~ 305 (334)
T 3iqw_A 303 LVE 305 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 272
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.33 E-value=0.00055 Score=75.58 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..++.|.|++.-.|+||||+|+.|+.+|. ++|++|..+=
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 45788999999999999999999999994 6799999876
No 273
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.25 E-value=0.0069 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|-|+| -.||||||+|.-|..+|. ++|+||..+=
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46788988 789999999999999994 8899998876
No 274
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.22 E-value=0.00082 Score=66.06 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+|+.+.|+| .+|+||||++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 578899999 679999999999999994 7899999999
No 275
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.07 E-value=0.005 Score=67.39 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=48.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C----CHHH--------------HHHhhcCCCCEEecCC
Q 003466 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V----NEVP--------------LMSYLRNRVPVLVLPP 312 (818)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~----~~~~--------------l~~~~~~~~pvlgiP~ 312 (818)
-+|+|+....-.+..+..+++.++..|+++.|+|+|++.. . ...+ |.+.+ .+.|+.-||+
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~-~~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELY-EDYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHc-cCCCEEEecC
Confidence 4899999999999999999999999999999999999832 1 1111 22222 1678888998
Q ss_pred CCC
Q 003466 313 LPQ 315 (818)
Q Consensus 313 ~~~ 315 (818)
.+.
T Consensus 312 ~~~ 314 (348)
T 3io3_A 312 LGC 314 (348)
T ss_dssp CSS
T ss_pred CCC
Confidence 775
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.02 E-value=0.0032 Score=70.92 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++++|. +|+||||++..|+..|. ++|.+|...-
T Consensus 97 ~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 456888887 79999999999999994 7799988765
No 277
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=96.99 E-value=0.0015 Score=73.32 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=33.8
Q ss_pred HHHHHHH-hCCceEeec------CCEEEEECCCCChHHHHHHHHHHHHHHHH
Q 003466 762 SLLKKLR-EDGVYMRPL------GNVIYLMCGPCSSPEVCSQLLLKLYQRLE 806 (818)
Q Consensus 762 ~~~~~l~-e~Gvlv~p~------g~~ir~~ppl~~t~edId~~~~~l~~~l~ 806 (818)
.+++.|+ ++||+++|+ .+.+|++... ++++|++++++|.++++
T Consensus 374 ~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 374 KDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp CSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 3566665 889999983 3679998873 88899999999988764
No 278
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.84 E-value=0.004 Score=71.47 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|+|. +|+||||++..|+.+|. ++|.+|...-
T Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 457889998 79999999999999994 6799988775
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.023 Score=60.72 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. . ++|++|.+.-
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~---~-~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISM---L-EKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCEEEEEe
Confidence 3457999998 69999999999999994 1 3788888765
No 280
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.45 E-value=0.028 Score=60.68 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.+.|+|. +|+||||++..|+..+. .+|.+|...
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIA 139 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEE
Confidence 457999998 99999999999999994 668888765
No 281
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.30 E-value=0.029 Score=61.53 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|+.|.|++.-.|+||||+|+.|..+|. ++|++|...=
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 678999999999999999999999994 7899998875
No 282
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.27 E-value=0.068 Score=57.04 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.++|. +|+||||++..|+..+. .+|.+|...-
T Consensus 98 ~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 456788885 89999999999999994 6788887654
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.013 Score=65.88 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...++|+|. +|+||||++..|+..+. ++|++|..+-
T Consensus 99 ~~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 357899997 89999999999999994 6788988776
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.033 Score=59.78 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+||||++..|+..+. .+|.+|...-
T Consensus 104 ~~vi~ivG~-~GsGKTTl~~~LA~~l~-----~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcC-CCChHHHHHHHHHHHHH-----hcCCEEEEEc
Confidence 456899998 99999999999999994 5688877643
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.065 Score=57.08 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.|+|. +|+||||++..|+..+. .+|.+|...-
T Consensus 97 ~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 4557888885 79999999999999994 5677877653
No 286
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.75 E-value=0.014 Score=64.77 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~-~~~~g~~v~~~K 78 (818)
..++.|.|++.-.|+||||+|+.|..+|.... ..++|++|...=
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 45788999999999999999999999993000 002588887765
No 287
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.43 E-value=0.044 Score=60.69 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCC--CCCCCCceeEEc
Q 003466 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP--TSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~--~~~~g~~v~~~K 78 (818)
.+++.|.|++.-.|+||||+|+.|..+|.... . ++|++|...=
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~-~~g~rVlliD 150 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLL-MEDLRILVID 150 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTG-GGCCCEEEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhh-cCCCeEEEEe
Confidence 45788999999999999999999999993100 0 2588887765
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.19 E-value=0.51 Score=53.77 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..+.|.|. +|+||||+...|+..+. ..+.+|.+.
T Consensus 294 eVI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 36889999 69999999999999984 556677654
No 289
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=94.06 E-value=0.69 Score=52.08 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccc-CcccCCccchhcccCCCCcEE--EecccccCCccccce-eecchH------------
Q 003466 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNA------------ 706 (818)
Q Consensus 643 l~~LreLc~~~gilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgKgLggGy~PlsA-vl~~~~------------ 706 (818)
++++|++||+-|+.|++|=+|. |+ .-|..+- .-+.. .|++ |.=|.|.| |-|+ ++++++
T Consensus 220 ~~~~reIAd~vGA~Lm~DmAHiaGL-VA~g~~p-sP~~~-ADvVTtTTHKTLrG---PrGG~Il~~~~~~~~~~k~~~~~ 293 (490)
T 3ou5_A 220 YARMREVCDEVKAHLLADMAHISGL-VAAKVIP-SPFKH-ADIVTTTTHKTLRG---ARSGLIFYRKGVKAVDPKTGREI 293 (490)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGHHH-HHTTSSC-CGGGT-CSEEEEESSSTTCS---CSCEEEEEECSEEEECC--CCEE
T ss_pred HHHHHHHHhhcccEEEechhhhhhh-hcccccC-Ccccc-ceEEeccccccccC---CCceEEEeccccccccccccchh
Confidence 8999999999999999999886 54 2222221 11222 5887 56789986 3333 444431
Q ss_pred -------HHhhccC----ChH---------HHH------------------HHHHHHHHcCCCeeEEEeee---eEEEEE
Q 003466 707 -------VFDSFVG----DSK---------LWD------------------LELIQQISSHRTVQRVVALG---TLCAIE 745 (818)
Q Consensus 707 -------i~~~l~~----~~~---------~~~------------------~~l~~~l~~~~~v~~vrg~G---l~~~ie 745 (818)
|-..+.+ +.. .+. +.|.+.|.+.+.- -| .-| .++-++
T Consensus 294 ~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~-vv-sGgTdnHlvLvD 371 (490)
T 3ou5_A 294 PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS-LV-SGGTDNHLVLVD 371 (490)
T ss_dssp ECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE-EG-GGSCSSSEEEEE
T ss_pred HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe-ee-cCCCCceEEEEe
Confidence 1111111 111 000 1233444444431 11 112 244455
Q ss_pred EecCcccCCCchHHHHHHHHHHHhCCceEee----------cCCEEEEECCCC----ChHHHHHHHHHHHHHHHHH
Q 003466 746 LQAAGCNAGYGSLYAASLLKKLREDGVYMRP----------LGNVIYLMCGPC----SSPEVCSQLLLKLYQRLEE 807 (818)
Q Consensus 746 l~~~~~~~~~~~~~a~~~~~~l~e~Gvlv~p----------~g~~ir~~ppl~----~t~edId~~~~~l~~~l~~ 807 (818)
+.+.. .......+.|-+.||.+.. ....||+-.|.. +.++|++++.+.|.+++..
T Consensus 372 l~~~g-------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~ 440 (490)
T 3ou5_A 372 LRPKG-------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CGGGT-------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccC-------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 54321 1244556677788999873 124689988774 5689999999999988853
No 290
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.56 E-value=0.55 Score=50.18 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 34777777799999999999987773 5677888875
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.37 E-value=0.059 Score=52.74 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
||+.+.|+| .||+||||++..|++.+. .+|.+++.+|.
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 478899999 789999999999999994 66888998884
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.35 E-value=0.98 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=27.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 130 ~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 46889998 99999999999999984 556676654
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.32 E-value=0.089 Score=52.10 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=23.3
Q ss_pred cCCCchhHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 6 RHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.||||++...-.+.=+ .+.+ ..|+.++|+|. +|+||||++..|++.+
T Consensus 3 ~~~~~~~~~~~~~~~~--------~~~~-~~~~~i~l~G~-~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 3 HHHHHSSGVDLGTENL--------YFQS-NAMVRIFLTGY-MGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------------------------CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCce--------eEec-CCCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 5788877654322211 1222 23568999997 8999999999999998
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.91 E-value=0.14 Score=50.20 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
||+.+.|+| -+|+||||+...|+..+. ++|.+|+.+|
T Consensus 5 ~~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 578899999 589999999999999983 6799999888
No 295
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.23 E-value=0.8 Score=51.51 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.+-.+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 4666677799999999999998884 4588999985
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.69 E-value=0.26 Score=53.50 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.+-.+|+|||++++-++..+. ..|.+|.||-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 4777777899999999999999884 5788999986
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.65 E-value=0.41 Score=47.10 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 23 HSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|+..|..|+....+...|+|+|. .|+||||++..|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~I~l~G~-~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 6 HHHHHSSGLVPRGSHMRVLLLGP-PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ----------CCCSCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 33344444444443346888888 8999999999999988
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.37 E-value=0.42 Score=46.07 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=29.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
|+.|+|+|. +|+||||++..|.+.|. ..|..+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 457899998 89999999999999993 567777666
No 299
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.47 E-value=2.8 Score=46.87 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++-++.... . +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a---~-~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAA---L-KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 4666666799999999999998874 2 4588899886
No 300
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.43 E-value=4.7 Score=45.68 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~-g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++-++..+. .+ |.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a-----~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG-----TAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT-----TTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH-----HhcCCcEEEEe
Confidence 4666666699999999999999883 44 88999885
No 301
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.80 E-value=0.62 Score=44.25 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
||+.|+|+|. +|+||||++..|.+.|
T Consensus 1 m~~~I~l~G~-~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence 4678999996 8999999999999998
No 302
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.46 E-value=7.2 Score=42.43 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|. +|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4667776 99999999999999984 6688898875
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.31 E-value=0.68 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+++.|+|+|. +|+||||++..|.+.|
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 4667999998 9999999999999998
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.14 E-value=0.67 Score=43.76 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|+.|+|+|. +|+||||++..|.+.+
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 457888887 8999999999999998
No 305
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=84.12 E-value=2.1 Score=48.93 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+||-||||| .-|+.||-.+++.|.+.|+ .+|++|...|
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~-----~~g~~v~~~k 40 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLK-----RRGYNVTAVK 40 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHH-----HCCceEEEEe
Confidence 367899999 7799999999999999994 8999999999
No 306
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.68 E-value=1.1 Score=43.83 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
+.++|+|. +|+|||+++.+++..+. ++|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 57999997 89999999999999994 6677777654
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.30 E-value=0.83 Score=44.79 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+..|+.|+|+|. .|+||||++..|.+.+
T Consensus 11 ~~~~~~~I~l~G~-~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 11 SPDQVSVIFVLGG-PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CTTTCEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCCCCcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 4556677899997 8999999999999887
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.29 E-value=0.73 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+|+.++|+|. +|+||||++..|.+.|
T Consensus 3 ~m~~i~i~G~-~GsGKsTla~~La~~l 28 (175)
T 1via_A 3 LAKNIVFIGF-MGSGKSTLARALAKDL 28 (175)
T ss_dssp --CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 3667999998 8999999999999998
No 309
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.52 E-value=1 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=29.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
-++|+|. .|+||||..+.++..+. .+|.+|.+++|.
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~ 49 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPK 49 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEec
Confidence 3555554 69999999999998884 789999999984
No 310
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=82.19 E-value=1.1 Score=44.52 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=29.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
-.+++|+ .|+|||+..+.+++-+. .+|++|..|||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4556655 69999999999998884 789999999985
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.18 E-value=0.99 Score=44.31 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 34 ~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+|+.|.|+|. +|+||||++..|.+.+
T Consensus 15 ~~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 15 RRFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CCCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 345667899998 8999999999999988
No 312
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.66 E-value=1 Score=42.97 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|+|+|. +|+||||++..|.+.|
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 45888888 8999999999999998
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.12 E-value=1.3 Score=42.04 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.5
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|..++|+|. .|+||||++..|.+.|
T Consensus 6 ~~~~i~l~G~-~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGF-MGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred ccceEEEECC-CCCCHHHHHHHHHHHh
Confidence 3678999998 8999999999999998
No 314
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=81.03 E-value=1.4 Score=43.27 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=29.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
.++|+|. .|+||||..+.+++.+. .+|.+|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 4677776 78999999988888773 678999999984
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.86 E-value=1.3 Score=42.70 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|+|+|. .|+||||++..|.+.|
T Consensus 3 ~~I~l~G~-~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGL-PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHc
Confidence 45889997 8999999999999998
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.70 E-value=1.3 Score=42.44 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|+|+|. +|+||||++..|.+.+
T Consensus 11 ~~~i~i~G~-~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGT-PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence 456889997 8999999999999998
No 317
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.11 E-value=0.71 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. ||+|||+++..|++.|
T Consensus 42 lIvI~GP-TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGA-TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECS-TTSSHHHHHHHHHTTS
T ss_pred eEEEECC-CCCCHHHHHHHHHHHC
Confidence 6888998 9999999999998887
No 318
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.78 E-value=7.9 Score=43.26 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+.+-.+|+|||++++-++..+. . +.|.+|.||=
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~---~-~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVA---T-KTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH---H-HSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 34777777799999999999999874 1 3578888886
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.68 E-value=1.7 Score=42.00 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|+|. .|+||||++..|...|. .+|.++.++.
T Consensus 15 ~i~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 48 (186)
T 2yvu_A 15 VVWLTGL-PGSGKTTIATRLADLLQ-----KEGYRVEVLD 48 (186)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEee
Confidence 4778887 89999999999999993 5677776653
No 320
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.74 E-value=2.7 Score=42.70 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=27.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.+..--.|+||||++..|+..| .+|++|...-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l------~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL------EDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH------TTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH------HCCCeEEEEe
Confidence 3455555568999999999999999 3577876654
No 321
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=78.58 E-value=18 Score=39.36 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.| ..|+|||++++.++..+. ++|.+|.||-
T Consensus 76 li~I~G-~pGsGKTtlal~la~~~~-----~~g~~vlyi~ 109 (366)
T 1xp8_A 76 ITEIYG-PESGGKTTLALAIVAQAQ-----KAGGTCAFID 109 (366)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEc-CCCCChHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 456655 589999999999998874 5688999887
No 322
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=78.01 E-value=1.9 Score=43.03 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCCCCcHH-HHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 35 LSHPTFQIWSANTSLGKT-LVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT-~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
.+.+-+||.|+ .++||| .+-..+-++. .+|++|.+|||
T Consensus 18 ~~g~l~fiyG~-MgsGKTt~Ll~~i~n~~------~~~~kvl~~kp 56 (195)
T 1w4r_A 18 TRGQIQVILGP-MFSGKSTELMRRVRRFQ------IAQYKCLVIKY 56 (195)
T ss_dssp -CCEEEEEEEC-TTSCHHHHHHHHHHHHH------HTTCCEEEEEE
T ss_pred CceEEEEEECC-CCCcHHHHHHHHHHHHH------HcCCeEEEEcc
Confidence 34456788887 899999 5555555554 66899999998
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.51 E-value=1.7 Score=40.98 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
-+.++|+|. +|+|||++..+++..+. .+|.++.++.
T Consensus 36 g~~~~l~G~-~G~GKTtL~~~i~~~~~-----~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGE-EGAGKSHLLQAWVAQAL-----EAGKNAAYID 71 (149)
T ss_dssp CSEEEEESS-STTTTCHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCcEEEEc
Confidence 456899998 99999999999999994 5577777775
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.19 E-value=2.5 Score=40.47 Aligned_cols=24 Identities=13% Similarity=0.082 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..|+|+|. +|+||||++..|.+.|
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHH
Confidence 35888888 8999999999999998
No 325
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.66 E-value=1.8 Score=43.57 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 31 LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 31 ~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..++..|..|+|.|. .|+||||++..|.+.|
T Consensus 10 ~~~~~~~~~I~l~G~-~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 10 VPESPKGVRAVLLGP-PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp ----CCCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 334445667999998 6999999999999998
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.26 E-value=1.2 Score=42.69 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=18.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|..|+|+|. .|+||||++..|.+.|
T Consensus 5 ~~~I~l~G~-~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGP-FGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECC-C----CHHHHHHHHHS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 457889998 8999999999999888
No 327
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.00 E-value=13 Score=39.82 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--CCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA--NKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~--g~~v~~~K 78 (818)
.+.|.|. .|+|||++++-++..+. ++ |.++.|+-
T Consensus 30 iteI~G~-pGsGKTtL~Lq~~~~~~-----~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGP-SKSFKSNFGLTMVSSYM-----RQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHH-----HHCTTCEEEEEE
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCceEEEEe
Confidence 4677776 99999999999998884 33 77888865
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.78 E-value=1.9 Score=41.38 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|.|+|. .|+||||++..|.+.+
T Consensus 6 ~~~I~l~G~-~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGG-PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 456888887 8999999999999988
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.75 E-value=2.2 Score=41.26 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|+|+|. +|+||||++..|.+.+
T Consensus 10 ~~~I~l~G~-~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGT-PGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 457999997 9999999999999883
No 330
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.57 E-value=1.9 Score=40.81 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..+.|+|. +|+||||++..|...+
T Consensus 4 ~~~i~l~G~-~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP-MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHh
Confidence 356899998 8999999999999888
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.55 E-value=2.1 Score=42.74 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+.=|+.|.|||+.+.|++-... .+|++|.++.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-----g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-----GHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 456777778888999999999987664 8899999994
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.35 E-value=3 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|.|+|. .|+||||++..|.+.|
T Consensus 6 ~I~i~G~-~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGI-DGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHH
Confidence 4778887 8999999999999999
No 333
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.21 E-value=2.8 Score=41.97 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++-++.... . +.|.+|.||=
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~---~-~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA---E-EYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH---H-HHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCCceeec
Confidence 4666666799999999998775421 1 5577888875
No 334
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=74.92 E-value=1.7 Score=41.74 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=29.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
-+.++|+|. +|+|||+++.+++..+. . .+|..+.++.
T Consensus 38 g~~~~l~G~-~G~GKTtL~~~i~~~~~---~-~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGS-PGVGKTHLAVATLKAIY---E-KKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCS-SSSSHHHHHHHHHHHHH---H-HSCCCCCEEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHH---H-HcCCeEEEEE
Confidence 357899997 89999999999999983 2 4577776654
No 335
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.88 E-value=2.4 Score=41.38 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|..+.|+|. .|+||||++..|.. +
T Consensus 1 m~~i~i~G~-~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 1 MKRIGLTGN-IGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHH-T
T ss_pred CeEEEEECC-CCcCHHHHHHHHHH-C
Confidence 457899998 89999999998888 7
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=74.45 E-value=2 Score=41.51 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|.|+|. .|+||||++..|.+.|. ..|..+...+
T Consensus 3 I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHH-----HCCC-EEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEee
Confidence 677777 89999999999999993 6688776544
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.24 E-value=1.8 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|+.++|+|. +|+||||++..|++.+
T Consensus 1 M~li~I~G~-~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 1 MLLHLIYGP-TCSGKTDMAIQIAQET 25 (253)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCcCHHHHHHHHHhcC
Confidence 456888888 9999999999999988
No 338
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=73.67 E-value=2.8 Score=47.32 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCeEEEEeCCC---CCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANT---SLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t---~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.|+||++.. |-|||+++.+|..+|. +.|++|...
T Consensus 57 ~K~IlVTS~~PTP~GEGKSTtsinLA~alA-----~~GkkVLLi 95 (557)
T 3pzx_A 57 GKLILVTAITPTPAGEGKTTTSVGLTDALA-----RLGKRVMVC 95 (557)
T ss_dssp CEEEEEEESCCCTTCCCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcEEEEEcCCCCCCCCCchhHHHHHHHHHH-----HcCCeEEEE
Confidence 56899999999 9999999999999994 789998765
No 339
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.66 E-value=3 Score=41.27 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+|||+++..+++.+. .++.++.++.
T Consensus 52 ~~~~ll~G~-~G~GKT~la~~l~~~~~-----~~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGP-VKSGRTHLIHAACARAN-----ELERRSFYIP 87 (242)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 457999998 79999999999999994 5577777665
No 340
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=73.37 E-value=2.3 Score=45.21 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+|||+++.+|+..+. . ++|.+|.++-
T Consensus 152 ~~~lll~G~-~GtGKT~La~aia~~~~---~-~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGD-MGIGKSYLLAAMAHELS---E-KKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECS-TTSSHHHHHHHHHHHHH---H-HSCCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCcEEEEE
Confidence 457999998 99999999999999983 1 3477777664
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=73.12 E-value=2.6 Score=43.35 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCcee
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFV 75 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~ 75 (818)
|+-|+|+|. .|+||||++..|.+.|. ..|..+.
T Consensus 4 ~~lIvl~G~-pGSGKSTla~~La~~L~-----~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGL-PGVGKSTFSKNLAKILS-----KNNIDVI 36 (260)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEE
T ss_pred CEEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCCEEE
Confidence 557899999 99999999999999983 4565554
No 342
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=72.70 E-value=3.2 Score=44.89 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
...+.|+|. .|+||||++..|+..+. .+|.+|..+-
T Consensus 79 ~~~I~i~G~-~G~GKSTl~~~L~~~l~-----~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGV-PGVGKSTAIEALGMHLI-----ERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCceEEEe
Confidence 346889996 99999999999999994 6788887765
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.63 E-value=23 Score=46.84 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+-..|+|||++++.++..+. ..|.+|.||.
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a-----~~g~~VlyiS 767 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 767 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEE
Confidence 4666777899999999999999984 5677899998
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.30 E-value=3.5 Score=42.10 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=26.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 41 ~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+-..|||||++++.+...+. ++|++|...-
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~-----~~G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQL-----RQGVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-----HCCCCEEEEE
Confidence 45556699999999999999994 7798876443
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.85 E-value=3.1 Score=40.10 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
++.|+|+|. .|+||||++..|.+.|
T Consensus 9 ~~~I~l~G~-~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGG-PGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 456899997 8999999999999998
No 346
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.77 E-value=2.2 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. ||+|||+++..|++.+
T Consensus 6 ~~i~i~Gp-tGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGP-TAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECC-CCCCHHHHHHHHHHHc
Confidence 46888888 9999999999999988
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.69 E-value=4.7 Score=39.34 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=27.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..|.|+|. .|+||||++..|.+.|. ..+.++..++
T Consensus 11 ~~I~l~G~-~GsGKST~~~~L~~~l~-----~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGL-DRSGKSTQSKLLVEYLK-----NNNVEVKHLY 45 (212)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 35888887 89999999999999983 4567775544
No 348
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=71.23 E-value=4.2 Score=41.08 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceec
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (818)
.+++|+ -++|||+..+.++.-+. .+|++|..|||..
T Consensus 31 ~vitG~-MgsGKTT~lL~~a~r~~-----~~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGS-MFSGKSEELIRRVRRTQ-----FAKQHAIVFKPCI 66 (214)
T ss_dssp EEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEECC-
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEecc
Confidence 345554 49999999999988884 7899999999853
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=70.94 E-value=2.8 Score=40.26 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. +|+||||++..|.+.|
T Consensus 7 ~I~l~G~-~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGH-PATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHc
Confidence 5788888 8999999999999988
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=70.65 E-value=1.2 Score=43.74 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|.|. +|+||||++..|.+.|. .+|.+|..++
T Consensus 2 ~I~i~G~-~GsGKsTl~~~L~~~l~-----~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGV-DGAGKRTLVEKLSGAFR-----AAGRSVATLA 35 (214)
T ss_dssp EEEEEEE-EEEEHHHHHHHHHHHHH-----EEEEEEEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 4677786 89999999999999993 5577776654
No 351
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=70.11 E-value=4.4 Score=41.48 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEceec
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (818)
-.+++|+ -++|||+..++++.-.. .+|++|..|||..
T Consensus 21 l~v~~G~-MgsGKTT~lL~~~~r~~-----~~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGP-MFSGKSTELMRRVRRFQ-----IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEETT
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCeEEEEeecC
Confidence 3455544 48999999998887773 8899999999964
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=69.56 E-value=3.4 Score=41.02 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|..|+|.|. +|+||||++..|.+.|
T Consensus 5 ~~~I~l~G~-~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGA-PASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 456899998 8999999999999998
No 353
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.32 E-value=2.8 Score=39.70 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 003466 39 TFQIWSANTSLGKTLVSAGLSS 60 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~ 60 (818)
.|+|+|. +|+||||++..|.+
T Consensus 4 ~I~i~G~-~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGC-PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECC-TTSSHHHHHHHHHH
T ss_pred EEEEecC-CCCCHHHHHHHHHh
Confidence 4777887 89999999999887
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=69.13 E-value=2.9 Score=40.35 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|.|+|. .|+||||++..|.+.|
T Consensus 13 ~~I~l~G~-~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGG-PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46888997 8999999999999998
No 355
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=69.12 E-value=7.8 Score=40.57 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++++|. +|+|||+++.+|++.+ |..+..+.
T Consensus 36 p~~lLl~Gp-pGtGKT~la~aiA~~l--------~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGG-KGQGKSFQCELVFRKM--------GINPIMMS 68 (293)
T ss_dssp CSEEEEEEC-TTSCHHHHHHHHHHHH--------TCCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh--------CCCEEEEe
Confidence 347899997 8999999999999999 55666655
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=68.89 E-value=2.8 Score=40.19 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|+|. .|+||||++..|.+.|. ..|..+....
T Consensus 2 ~I~l~G~-~GsGKsT~~~~L~~~l~-----~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGI-DGSGKTTQAKKLYEYLK-----QKGYFVSLYR 35 (195)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 4778887 89999999999999983 4577766543
No 357
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=68.60 E-value=3.6 Score=39.98 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+.|+|. +|+||||++..|...|
T Consensus 3 ~~i~i~G~-~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGP-SASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 36788886 8999999999999988
No 358
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.39 E-value=3.8 Score=38.17 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
-|+|+|. +|+||||++..| +.+
T Consensus 3 ~I~l~G~-~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGM-PGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECC-TTSCHHHHHHHH-HHT
T ss_pred EEEEECC-CCCCHHHHHHHH-HHC
Confidence 5788887 899999999999 665
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.90 E-value=4.3 Score=38.06 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|.|+|. .|+||||++..|.+.|
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF-MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC-TTSCHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788888 8999999999999988
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=67.21 E-value=5.6 Score=38.80 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|.|+|. .|+||||++..|.+.|. ..+.++..+.
T Consensus 11 ~I~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~v~~~~ 44 (215)
T 1nn5_A 11 LIVLEGV-DRAGKSTQSRKLVEALC-----AAGHRAELLR 44 (215)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEee
Confidence 5888887 89999999999999983 5677775553
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=67.12 E-value=3.7 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
|..|+|+|. +|+||||++..|.+.|
T Consensus 7 ~~~I~l~G~-~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGA-PGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHS
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 456899998 8999999999999988
No 362
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.53 E-value=3.7 Score=40.13 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. +|+||||++..|+..+
T Consensus 31 ~i~l~G~-~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGV-SGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 5888887 8999999999999887
No 363
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.52 E-value=3.6 Score=39.81 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHH
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSS 60 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~ 60 (818)
.+..|.|+|. +|+||||++..|.+
T Consensus 7 ~~~~I~i~G~-~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGN-IGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEEC-TTSCHHHHHHHHHH
T ss_pred CceEEEEECC-CCCCHHHHHHHHHH
Confidence 3456889998 99999999876654
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.84 E-value=4.1 Score=38.93 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.|+|. +|+||||++..|...|. ..|..+..+
T Consensus 7 ~i~l~G~-~GsGKST~~~~L~~~l~-----~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 39 (179)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hCCCcEEEE
Confidence 4778887 89999999999999983 446555443
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=65.83 E-value=6.1 Score=41.22 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 33 ~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+..+..|.|+|. +|+||||++..|. .+
T Consensus 71 ~~~~~~iI~I~G~-~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 71 LPSGLYVLGLTGI-SGSGKSSVAQRLK-NL 98 (281)
T ss_dssp SCTTCEEEEEEEC-TTSCHHHHHHHHH-HH
T ss_pred CCCCCEEEEEECC-CCCCHHHHHHHHH-HC
Confidence 4444567899997 8999999999888 45
No 366
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=65.52 E-value=4.8 Score=42.52 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+|||+++.+++..+. +.+.++.++.
T Consensus 37 ~~~lll~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456999998 89999999999999984 4477777765
No 367
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=65.48 E-value=4.4 Score=41.91 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCCCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 35 LSHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+||-+|||| .-|+.||-.+++.|.+.|+ .+|++|...|
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk-----~rG~~Vt~~K 60 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 60 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHH-----TTTCCEECCE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHH-----HCCCeeEEEe
Confidence 4578899998 6699999999999999994 8999998888
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=65.38 E-value=3.9 Score=39.52 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|.|.|. +|+||||++..|.+.|
T Consensus 2 ~I~i~G~-~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGT-VGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CccCHHHHHHHHHHhc
Confidence 4788888 8999999999999999
No 369
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=64.44 E-value=4.6 Score=37.96 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.+.++|+|. +|+|||+++..+++.+.
T Consensus 43 ~~~vll~G~-~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGD-PGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESC-GGGCHHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHHH
Confidence 446899998 79999999999999983
No 370
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=64.38 E-value=4.1 Score=43.58 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|+ ||+|||+++..|++.+
T Consensus 11 ~~i~i~Gp-tgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGP-TASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECC-CccCHHHHHHHHHHhC
Confidence 35677777 9999999999999988
No 371
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.36 E-value=5.1 Score=39.58 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|.+.+
T Consensus 6 ~~i~i~G~-~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGP-SGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 36889997 9999999999999888
No 372
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=64.10 E-value=5 Score=38.61 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+.|+|. ||+||||+...|+..+
T Consensus 6 ~~i~i~Gp-sGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGA-HGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHC
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhC
Confidence 45778886 8999999999999876
No 373
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=63.71 E-value=5.2 Score=41.63 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCCCeEEEEe-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 35 LSHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 35 ~~~~~~~i~g-t~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+||-+|||| .-|+.||=.+++.|.+.|+ .+|++|...|
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk-----~~G~~Vt~~K 60 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 60 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHH-----HCCCcceeee
Confidence 4578899998 8899999999999999994 8999999998
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.61 E-value=10 Score=40.23 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
...+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 102 g~vi~lvG~-nGsGKTTll~~Lagll~-----~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFC 136 (304)
T ss_dssp SSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 457899998 79999999999999994 456676554
No 375
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.52 E-value=4.1 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. ||+|||+++..|++.|
T Consensus 9 lI~I~Gp-tgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGP-TASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHT
T ss_pred eEEEECC-CcCcHHHHHHHHHHHc
Confidence 5778887 9999999999999998
No 376
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=63.40 E-value=3.4 Score=42.02 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=23.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC----CCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSA----NKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~----g~~v~~~K 78 (818)
|.|.|. .|+||||++..|.+.|. .+ |.+|...+
T Consensus 28 I~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGI-DGAGKTTHLQWFCDRLQ-----ERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECC-C---CHHHHHHHHHHHH-----HHHGGGTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hhccccceeeeeec
Confidence 555576 89999999999999993 55 88887665
No 377
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=63.37 E-value=3 Score=43.96 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=18.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..|-|+| .+|+||||++..|.+.|
T Consensus 6 ~iIgItG-~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTG-SSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEES-CC---CCTHHHHHHHHH
T ss_pred eEEEEEC-CCCCCHHHHHHHHHHHH
Confidence 3578888 69999999999999988
No 378
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.22 E-value=5.2 Score=37.89 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..+.|+|. +|+||||++..|...+
T Consensus 8 g~~i~l~G~-~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGV-SGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHhh
Confidence 456888887 8999999999998887
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.50 E-value=5.5 Score=39.41 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..|+|.|. .|+||||++..|.+.|
T Consensus 4 ~~~I~l~G~-~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGP-PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 346889998 6999999999999998
No 380
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.44 E-value=6.1 Score=38.55 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|...+
T Consensus 26 ~~i~l~G~-sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGL-SGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHH
Confidence 35888888 8999999999999998
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.14 E-value=4.3 Score=39.67 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.9
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHH
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSS 60 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~ 60 (818)
|..+.|+|. .|+||||++..|..
T Consensus 2 ~~~i~l~G~-~GsGKST~~~~La~ 24 (206)
T 1jjv_A 2 TYIVGLTGG-IGSGKTTIANLFTD 24 (206)
T ss_dssp CEEEEEECS-TTSCHHHHHHHHHT
T ss_pred CcEEEEECC-CCCCHHHHHHHHHH
Confidence 456888887 89999999987765
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.12 E-value=4.9 Score=38.36 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.++|+|. .|+||||++..|.+.+
T Consensus 6 ~I~l~G~-~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGP-PGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4788887 8999999999999988
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=62.02 E-value=5.8 Score=37.23 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++..+++.+
T Consensus 43 ~~~~ll~G~-~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGE-PGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCceEEECC-CCCCHHHHHHHHHHHH
Confidence 356899998 7999999999999998
No 384
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.90 E-value=4.2 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..+.|+|. +|+||||++..|.+.+
T Consensus 21 ~~~i~i~G~-~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGV-TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEES-TTSSHHHHHHHHHTTS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 446788887 6999999998887765
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=61.79 E-value=4.5 Score=38.51 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 003466 39 TFQIWSANTSLGKTLVSAGLSS 60 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~ 60 (818)
.+.|.|. +|+|||++...|+.
T Consensus 23 ki~vvG~-~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGA-GGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECS-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHc
Confidence 5888887 99999998776653
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.59 E-value=4.8 Score=41.02 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..|.|+|. +|+||||++..|.+.|
T Consensus 22 ~~iI~I~G~-~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGG-TASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHh
Confidence 346888887 9999999999999988
No 387
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.55 E-value=6 Score=38.75 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..+.|+|. +|+||||++..|...+. ..|.++...
T Consensus 23 ~~i~i~G~-~GsGKstl~~~l~~~~~-----~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGL-SRSGKTTLANQLSQTLR-----EQGISVCVF 56 (201)
T ss_dssp EEEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHh-----hcCCeEEEe
Confidence 35788886 89999999999999983 446666554
No 388
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.12 E-value=5.2 Score=39.47 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+.|+|. +|+||||++..|+..+
T Consensus 9 ~~i~l~Gp-sGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGP-SGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHST
T ss_pred cEEEEECc-CCCCHHHHHHHHHhhC
Confidence 45778887 8999999999998877
No 389
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=60.72 E-value=7.5 Score=38.66 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|+|. +|+|||+++.-++..+. ++|.+|.|+-
T Consensus 25 ~~~i~G~-~GsGKTtl~~~~~~~~~-----~~~~~v~~~~ 58 (247)
T 2dr3_A 25 VVLLSGG-PGTGKTIFSQQFLWNGL-----KMGEPGIYVA 58 (247)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 4566666 89999999998887773 5688888885
No 390
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.48 E-value=5.1 Score=39.25 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.++|+|. +|+||||++..|.+.+
T Consensus 14 ~i~l~G~-sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGP-SGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECC-TTSCHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 4788887 8999999999999887
No 391
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=60.31 E-value=8.6 Score=37.68 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
++.+.|+| .+|+|||++...|+..+. .+ .++..+.
T Consensus 30 ~~~i~i~G-~~g~GKTTl~~~l~~~~~-----~~-~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMG-AIGSGKTLLIERTIERIG-----NE-VKIGAML 64 (221)
T ss_dssp CEEEEEEE-CTTSCHHHHHHHHHHHHT-----TT-SCEEEEE
T ss_pred ceEEEEEc-CCCCCHHHHHHHHHHHhc-----cC-CeEEEEe
Confidence 45788889 589999999999999982 33 6666664
No 392
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=60.01 E-value=5.8 Score=38.97 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. +|+||||++..|++.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGL-PGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3788887 8999999999999988
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.00 E-value=6.4 Score=39.00 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..|+|.|. .|+||||++..|.+.|
T Consensus 6 ~~I~l~G~-~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGA-PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 46889998 6999999999999998
No 394
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.70 E-value=9.4 Score=38.43 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.++++.+
T Consensus 39 ~~~vll~G~-~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGP-PGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh
Confidence 457999997 8999999999999988
No 395
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=59.58 E-value=10 Score=37.64 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|.|-|. -|+||||.+..|.+.| .+|.+|...+
T Consensus 5 I~~EG~-dGsGKsTq~~~L~~~L------~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGP-EGSGKTTVINEVYHRL------VKDYDVIMTR 36 (205)
T ss_dssp EEEECC-TTSCHHHHHHHHHHHH------TTTSCEEEEE
T ss_pred EEEECC-CCCcHHHHHHHHHHHH------HCCCCEEEee
Confidence 344476 4999999999999999 5588887766
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.49 E-value=6.3 Score=38.75 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. .|+||||++..|++.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGL-PGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3788887 8999999999998887
No 397
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.41 E-value=7.7 Score=38.15 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|||- .|+|||||+..|.+.+
T Consensus 13 ~iIgltG~-~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGK-IGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 35778885 9999999999998887
No 398
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=57.40 E-value=4.7 Score=39.80 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=26.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 42 IWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 42 i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|-|. -|+||||.+..|.+.|. ++|.+|...+
T Consensus 5 ~EG~-DGsGKsTq~~~L~~~L~-----~~g~~v~~tr 35 (197)
T 3hjn_A 5 FEGI-DGSGKSTQIQLLAQYLE-----KRGKKVILKR 35 (197)
T ss_dssp EECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 3466 58999999999999994 7899998877
No 399
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.20 E-value=8.6 Score=35.48 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.++|+|- +|+|||+++.+|....
T Consensus 26 ~vll~G~-~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGA-PGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESS-TTSSHHHHHHHHHHSS
T ss_pred CEEEECC-CCCCHHHHHHHHHHhC
Confidence 4899997 8999999999999887
No 400
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=57.20 E-value=9.6 Score=39.07 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.+|+..+
T Consensus 51 ~~~~ll~G~-~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 51 PKGILLYGP-PGTGKTLLAKAVATET 75 (285)
T ss_dssp CSEEEEESS-SSSSHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHh
Confidence 457999997 8999999999999988
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.03 E-value=6.3 Score=43.65 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.|+|+|+ ||+|||+++..|++.+
T Consensus 3 ~~i~i~Gp-tgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGT-TGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEEC-SSSSHHHHHHHHHHHH
T ss_pred cEEEEECc-chhhHHHHHHHHHHHC
Confidence 35788886 9999999999999998
No 402
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=56.58 E-value=7.8 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|.|. +|+|||+++..|+..+. ..+.+|.++-
T Consensus 24 ~~~~i~G~-~GsGKTtl~~~l~~~~~-----~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGE-PGTGKTIFSLHFIAKGL-----RDGDPCIYVT 58 (235)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 35677776 89999999999997773 4566777764
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.49 E-value=9.2 Score=37.63 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. .|+||||++..|.+.+
T Consensus 2 ~I~l~G~-~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGA-PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3788898 6999999999999988
No 404
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.46 E-value=8.6 Score=39.16 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
..++|+|- +|+|||+++.+|.+.+ . +.+..+.++
T Consensus 30 ~~vll~G~-~GtGKt~la~~i~~~~----~-~~~~~~~~v 63 (265)
T 2bjv_A 30 KPVLIIGE-RGTGKELIASRLHYLS----S-RWQGPFISL 63 (265)
T ss_dssp SCEEEECC-TTSCHHHHHHHHHHTS----T-TTTSCEEEE
T ss_pred CCEEEECC-CCCcHHHHHHHHHHhc----C-ccCCCeEEE
Confidence 46899997 8999999999999987 2 444444443
No 405
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=56.28 E-value=8.8 Score=39.27 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.++++.+
T Consensus 64 ~~~vLl~G~-~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGP-PHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCcHHHHHHHHHHHh
Confidence 347999998 8999999999999987
No 406
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=56.24 E-value=6.8 Score=38.51 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|.|+|. ||+||||+...|+..+
T Consensus 3 pIVi~GP-SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECC-TTSSHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 4788888 8999999999998876
No 407
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.20 E-value=2.6 Score=42.21 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=20.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. ||+|||+++..|++.+
T Consensus 34 g~~ilI~Gp-sGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGD-SGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECC-CTTTTHHHHHHHHTTT
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHhC
Confidence 456889996 9999999998887654
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=56.01 E-value=7.1 Score=37.77 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|.|+|. .|+||||++..|.+.|
T Consensus 6 ~I~l~G~-~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGL-DKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHTS
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHH
Confidence 5888887 8999999999998877
No 409
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.85 E-value=9.1 Score=41.56 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|+| ..|+|||++++.|+..+. ++|.+|.|+-
T Consensus 64 ~ii~I~G-~pGsGKTtLal~la~~~~-----~~g~~vlyid 98 (356)
T 1u94_A 64 RIVEIYG-PESSGKTTLTLQVIAAAQ-----REGKTCAFID 98 (356)
T ss_dssp SEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3466666 699999999999998884 6688999886
No 410
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.69 E-value=9.9 Score=39.77 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.++|+|. +|+||||++..|+..+
T Consensus 35 livl~G~-sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQ-PGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECC-TTSCTHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3555665 9999999999998887
No 411
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=54.87 E-value=11 Score=35.96 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q 003466 39 TFQIWSANTSLGKTLVSAGLS 59 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~ 59 (818)
.+.|.|. +++|||++...|+
T Consensus 23 ki~v~G~-~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGD-TGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESS-TTSSHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHh
Confidence 5889995 8999999875554
No 412
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=54.45 E-value=7.1 Score=39.83 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..++|+|. +|+||||++..|.+.+
T Consensus 33 ~~i~l~G~-~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQ-SGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESC-GGGTTHHHHHHHHHHT
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 35778887 9999999999999988
No 413
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=54.32 E-value=68 Score=41.87 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+.+-.+|+|||++++.++..+. ++|.+|.||-
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa-----~~g~~VlyiS 767 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 767 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHH-----HcCCCeEEEe
Confidence 3555555799999999999999884 6788899986
No 414
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.11 E-value=13 Score=37.46 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|.|. +|+|||+++.+|+..+
T Consensus 45 ~~~vll~G~-~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGP-PGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHc
Confidence 457999997 8999999999999988
No 415
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=53.18 E-value=12 Score=38.87 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
...++|+|. +|+|||+++.++++.+.
T Consensus 67 ~~~vll~G~-~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGN-PGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEEC-TTSSHHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHH
Confidence 446999997 99999999999999983
No 416
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=53.01 E-value=11 Score=35.80 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=16.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHH
Q 003466 38 PTFQIWSANTSLGKTLVSAGLS 59 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~ 59 (818)
-.+.|.|. +++|||++...|+
T Consensus 23 ~ki~vvG~-~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGN-SSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECS-TTSSHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHH
Confidence 36889995 8999999876554
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.83 E-value=8.7 Score=38.96 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. +|+||||++..|++.+
T Consensus 31 ~I~l~G~-~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGA-PGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 5888887 8999999999999888
No 418
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.70 E-value=9.6 Score=38.88 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|++.|
T Consensus 28 ~~I~I~G~-~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGP-SGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC-CCCCHHHHHHHHHHhc
Confidence 56889997 8999999999999988
No 419
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.59 E-value=12 Score=39.53 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
...+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 100 g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 134 (302)
T ss_dssp CEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CcEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEE
Confidence 346889997 99999999999999984 456666543
No 420
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=52.44 E-value=14 Score=38.14 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++++|. +|+|||+++..+++.+
T Consensus 50 ~~~vll~G~-~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGP-TGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHh
Confidence 346899998 8999999999999998
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.39 E-value=9.6 Score=39.19 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.+.|+|. +|+||||++..|.+.|
T Consensus 48 g~~i~l~G~-~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGM-MGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHhc
Confidence 456999998 8999999999999998
No 422
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.19 E-value=13 Score=39.53 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=22.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++..+++.+
T Consensus 45 ~~~li~G~-~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGR-PGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHH
Confidence 47899998 8999999999999998
No 423
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.07 E-value=79 Score=41.96 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.+..-.+|+|||++++-++.... ++|.+|.||-
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a-----~~G~~vlyis 418 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 418 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----hcCCeEEEEE
Confidence 4666666699999999999999884 6688898887
No 424
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=51.77 E-value=9.4 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|-||||+ |||+++..|...|. ..|++|+.|-
T Consensus 64 ~~vI~VtGTN---GKtST~~~l~~iL~-----~~G~~vG~~t 97 (487)
T 2vos_A 64 YPSIHIAGTN---GKTSVARMVDALVT-----ALHRRTGRTT 97 (487)
T ss_dssp SCEEEEECSS---SHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred CeEEEEeCCC---CcHHHHHHHHHHHH-----HcCCCeEEEC
Confidence 5689999995 99999999999994 7899998664
No 425
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=51.43 E-value=11 Score=43.05 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+++|. +|+|||||+.+|.+.|
T Consensus 397 ~I~l~Gl-sGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 397 SIVLGNS-LTVSREQLSIALLSTF 419 (511)
T ss_dssp EEEECTT-CCSCHHHHHHHHHHHH
T ss_pred EEEeccc-CCCCHHHHHHHHHHHH
Confidence 6888898 6999999999999999
No 426
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.40 E-value=9.7 Score=37.90 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
||+....-.+.+.. -..+.|.|. +|+||||+...|+..+
T Consensus 9 ~~~~l~~isl~i~~-G~~~~lvGp-sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 9 HHSSGLVPRGSMNN-IYPLVICGP-SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------------C-CCCEEEECS-TTSSHHHHHHHHHHHS
T ss_pred ccccccCCceecCC-CCEEEEECC-CCCCHHHHHHHHHhhC
Confidence 34544444444333 345778887 8999999999998865
No 427
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.34 E-value=11 Score=35.77 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. .|+||||++..|.+.+
T Consensus 5 ~I~l~G~-~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGG-PGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4778887 8999999999999988
No 428
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=51.32 E-value=11 Score=36.27 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.++|+|. +|+|||+++..+++.+.
T Consensus 40 ~~ll~G~-~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGP-PGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECS-TTSSHHHHHHHHHHHHH
T ss_pred eEEEECC-CCCCHHHHHHHHHHHHh
Confidence 4899998 89999999999999883
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=51.26 E-value=17 Score=36.16 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
|.|.|. .|+||||++..|.+.|. .+|.+|...+
T Consensus 9 i~~eG~-~gsGKsT~~~~l~~~l~-----~~~~~v~~~~ 41 (213)
T 4edh_A 9 VTLEGP-EGAGKSTNRDYLAERLR-----ERGIEVQLTR 41 (213)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred EEEEcC-CCCCHHHHHHHHHHHHH-----HcCCCccccc
Confidence 455566 79999999999999994 7788887765
No 430
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=51.19 E-value=11 Score=38.03 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+..+.|.|. +|+||||++..|++.+
T Consensus 27 ~~~i~l~G~-~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGP-PGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 357899998 8999999999999988
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=50.87 E-value=8.6 Score=39.90 Aligned_cols=23 Identities=9% Similarity=0.019 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. +|+||||++..|.+.+
T Consensus 4 ~I~l~G~-~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGC-PGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCCHHHHHHHHHHhC
Confidence 5778887 8999999999998864
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=50.82 E-value=11 Score=38.48 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|.+.|
T Consensus 10 ~~i~i~G~-~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGP-AGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 35788887 8999999999999998
No 433
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.62 E-value=15 Score=39.58 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
...++++|. +|+|||+++.+|++.+
T Consensus 72 ~~~ill~Gp-~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGP-TGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHh
Confidence 456899998 8999999999999998
No 434
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=50.57 E-value=22 Score=37.77 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++.++++.+
T Consensus 71 ~~vLl~Gp-pGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQ-PGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHh
Confidence 57999998 8999999999999999
No 435
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=50.31 E-value=9.3 Score=34.84 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=17.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHH
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLS 59 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~ 59 (818)
|+.+.|.|. +|+|||++...|+
T Consensus 1 ~~ki~v~G~-~~~GKSsli~~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGR-PNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECC-TTSSHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHh
Confidence 467899995 7999999876655
No 436
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.02 E-value=11 Score=37.06 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=25.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.++|+|. +|+||||++..|.+.|. . ..|.++.++
T Consensus 27 ~i~~~G~-~GsGKsT~~~~l~~~l~---~-~~g~~~~~~ 60 (211)
T 1m7g_A 27 TIWLTGL-SASGKSTLAVELEHQLV---R-DRRVHAYRL 60 (211)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH---H-HHCCCEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc---c-ccCCcEEEE
Confidence 5788888 89999999999999982 1 235555544
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=49.64 E-value=10 Score=37.79 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.|+|+|. .|+||||++..|.+.|
T Consensus 2 ~I~l~G~-~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGP-NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 3778887 8999999999999988
No 438
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.54 E-value=8.8 Score=37.10 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|+..+
T Consensus 7 ~~i~l~G~-~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGP-SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECS-TTSCHHHHHHHHHHCT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHhh
Confidence 35788887 8999999999988876
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.48 E-value=9.5 Score=37.36 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.6
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHH
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSS 61 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~ 61 (818)
++++|+|- +|+|||++++.|++.
T Consensus 17 ~gvli~G~-SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGE-ANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHT
T ss_pred EEEEEEcC-CCCCHHHHHHHHHHc
Confidence 47888887 899999999998763
No 440
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=49.30 E-value=15 Score=38.83 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++++|. +|+|||+++.+++..+
T Consensus 51 ~~~vLl~Gp-pGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGP-PGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECS-SSSCHHHHHHHHHHHH
T ss_pred CCeEEEECC-CCCcHHHHHHHHHHHH
Confidence 468999998 8999999999999988
No 441
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.13 E-value=32 Score=38.92 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=27.2
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.++|+|. +|+|||+++.+|++.+ |..+..+.
T Consensus 77 ~~~lLL~Gp-pGtGKTtla~~la~~l--------~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGP-PGIGKTTAAHLVAQEL--------GYDILEQN 109 (516)
T ss_dssp CSEEEEECS-TTSSHHHHHHHHHHHT--------TCEEEEEC
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc--------CCCEEEEe
Confidence 468999998 8999999999999998 55555554
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=49.12 E-value=11 Score=36.86 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=16.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHH
Q 003466 39 TFQIWSANTSLGKTLVSAGLSS 60 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~ 60 (818)
.+.|.|. +|||||++...|+.
T Consensus 28 ki~lvG~-~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGN-AGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEES-TTSSHHHHHHHHHH
T ss_pred EEEEECc-CCCCHHHHHHHHHh
Confidence 5888896 89999998766554
No 443
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=48.97 E-value=11 Score=36.02 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||++..|+..+
T Consensus 10 ~~i~l~G~-~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGH-PGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEEC-TTSCHHHHHHHHHTCS
T ss_pred eEEEEECC-CCCCHHHHHHHHHhcc
Confidence 35788887 8999999998887654
No 444
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.80 E-value=10 Score=36.48 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. +|+||||+...|+..+
T Consensus 3 ii~l~Gp-sGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGP-SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESS-SSSSHHHHHHHHHHHC
T ss_pred EEEEECC-CCCCHHHHHHHHHhhC
Confidence 4667776 8999999999999887
No 445
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=48.61 E-value=10 Score=39.82 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.+.|+|. +|+||||++..|.+.|.
T Consensus 33 ii~I~G~-sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGP-QGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhh
Confidence 4677775 99999999999999993
No 446
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.60 E-value=11 Score=36.30 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.2
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|+|. +|+||||+...|+..+
T Consensus 8 ~ii~l~Gp-~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAP-SGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHS
T ss_pred cEEEEECc-CCCCHHHHHHHHHhhC
Confidence 35778887 8999999999998876
No 447
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=48.39 E-value=12 Score=36.20 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=16.8
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHH
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLS 59 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~ 59 (818)
.-.+.|.|. +++|||++...|+
T Consensus 25 ~~ki~vvG~-~~~GKSsli~~l~ 46 (201)
T 2gco_A 25 RKKLVIVGD-GACGKTCLLIVFS 46 (201)
T ss_dssp EEEEEEEES-TTSSHHHHHHHHH
T ss_pred ceEEEEECC-CCCCHHHHHHHHH
Confidence 346889996 8999999875544
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=48.39 E-value=19 Score=36.17 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
-|.|.|. .|+||||++..|...| . . |.++...
T Consensus 28 ~i~i~G~-~GsGKsT~~~~l~~~l----~-~-~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGP-EGSGKTTVINEVYHRL----V-K-DYDVIMT 59 (229)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHHH----T-T-TSCEEEE
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHH----h-c-CCCceee
Confidence 4667777 7999999999999999 3 4 6666443
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.31 E-value=16 Score=39.72 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
...+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 157 g~vi~lvG~-nGsGKTTll~~Lag~l~-----~~~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGV-NGGGKTTSLGKLAHRLK-----NEGTKVLMA 191 (359)
T ss_dssp SEEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEEcC-CCChHHHHHHHHHhhcc-----ccCCEEEEe
Confidence 346889997 99999999999999984 456666543
No 450
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.70 E-value=12 Score=36.75 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. +|+||||++..|.. +
T Consensus 6 ~I~i~G~-~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGG-IGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECC-TTSCHHHHHHHHHH-T
T ss_pred EEEEECC-CCCCHHHHHHHHHH-c
Confidence 4778886 89999999988876 5
No 451
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=47.60 E-value=14 Score=38.20 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|. +|+||||++..|+..+. . ..|.+|.+|-
T Consensus 37 ~~~i~G~-~G~GKTTl~~~ia~~~~---~-~~G~~v~~~~ 71 (296)
T 1cr0_A 37 VIMVTSG-SGMGKSTFVRQQALQWG---T-AMGKKVGLAM 71 (296)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH---H-TSCCCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH---H-HcCCeEEEEe
Confidence 3455555 89999999999998884 2 3477888875
No 452
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=47.53 E-value=16 Score=39.08 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.+++.|. +|+|||+++.+|++.+
T Consensus 51 ~~~vll~Gp-pGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGP-TGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHc
Confidence 456899998 8999999999999998
No 453
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=47.52 E-value=14 Score=41.10 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|-||||+ |||+++..|...|. ..|++|+.|.
T Consensus 51 ~~~vI~VtGTN---GKgSt~~~l~~iL~-----~~G~~vg~~t 85 (437)
T 3nrs_A 51 APKIFTVAGTN---GKGTTCCTLEAILL-----AAGLRVGVYS 85 (437)
T ss_dssp SSEEEEEECSS---SHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCCEEEEECCc---ChHHHHHHHHHHHH-----HCCCcEEEEC
Confidence 35689999994 99999999999994 7799999886
No 454
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=47.48 E-value=24 Score=40.79 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=29.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
+.++|+| ..|+|||++...|++.+. +.|.+|...-|
T Consensus 205 ~~~~I~G-~pGTGKTt~i~~l~~~l~-----~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTG-GPGTGKSTTTKAVADLAE-----SLGLEVGLCAP 240 (574)
T ss_dssp SEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEES
T ss_pred CEEEEEc-CCCCCHHHHHHHHHHHHH-----hcCCeEEEecC
Confidence 4566666 489999999999999994 77888887765
No 455
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=47.43 E-value=12 Score=41.26 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|-|||| -||||++..|...|. ..|++|+.|.
T Consensus 49 ~~vI~VTGT---nGKtTT~~~l~~iL~-----~~G~~~g~~~ 82 (422)
T 1w78_A 49 PFVFTVAGT---NGKGTTCRTLESILM-----AAGYKVGVYS 82 (422)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred CcEEEEeCC---cChHHHHHHHHHHHH-----HCCCCEEEEC
Confidence 567899999 599999999999994 7799998876
No 456
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=47.27 E-value=14 Score=43.21 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.|+|+|. +|+||||++..|.+.|. ++|..+..+
T Consensus 54 lIvLtGl-sGSGKSTlAr~La~~L~-----~~G~~~v~l 86 (630)
T 1x6v_B 54 TVWLTGL-SGAGKTTVSMALEEYLV-----CHGIPCYTL 86 (630)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHHH-----hcCCeEEEe
Confidence 5889998 89999999999999993 567776655
No 457
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=46.97 E-value=20 Score=35.13 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+.|+|. +|||||++...|+..+
T Consensus 39 ~~i~ivG~-~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGA-IGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred eEEEEEcC-CCCCHHHHHHHHHHHh
Confidence 46888887 9999999999999987
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.94 E-value=17 Score=39.52 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
..++|.|+ ||+|||++...|+..+. ..|.++..+-|
T Consensus 36 ~~~~i~G~-~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 36 SNWTILAK-PGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred CceEEEcC-CCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 45788897 89999999999988774 66888888865
No 459
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=46.90 E-value=12 Score=41.69 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCC--CCceeEEc
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA--NKKFVYLK 78 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~--g~~v~~~K 78 (818)
.+.++|+|. +|+|||+++.+++..+. ++ +.++.++.
T Consensus 130 ~~~lll~Gp-~G~GKTtLa~aia~~l~-----~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGG-VGLGKTHLLQSIGNYVV-----QNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECS-SSSSHHHHHHHHHHHHH-----HHCCSSCEEEEE
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH-----HhCCCCeEEEee
Confidence 346899998 89999999999999984 33 66666654
No 460
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.82 E-value=13 Score=36.02 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
+.++|+|. +|+|||+++..+++.+.
T Consensus 46 ~~~ll~G~-~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGT-RGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECS-TTSCHHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHhc
Confidence 36889997 89999999999999883
No 461
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.65 E-value=13 Score=36.31 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+-|+|. +|+||||++..|+..+
T Consensus 7 ~~i~i~G~-~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGG-TASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHh
Confidence 35778887 7999999999999988
No 462
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.44 E-value=18 Score=38.05 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.5
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++..+++.+
T Consensus 56 ~~vll~G~-~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGP-AGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECS-TTSSHHHHHHHHHHHT
T ss_pred CeEEEECc-CCCCHHHHHHHHHHHh
Confidence 35899997 9999999999998887
No 463
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=46.38 E-value=16 Score=36.90 Aligned_cols=35 Identities=23% Similarity=0.061 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcee
Q 003466 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (818)
Q Consensus 40 ~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KPi 80 (818)
.+|+|+ -++||||..+.++.-+. .+|.+|..|||.
T Consensus 31 ~vitG~-M~sGKTT~Llr~~~r~~-----~~g~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGS-MFSGKSEELIRRLRRGI-----YAKQKVVVFKPA 65 (219)
T ss_dssp EEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HcCCceEEEEec
Confidence 456665 69999996666666553 679999999984
No 464
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=46.33 E-value=13 Score=36.31 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+.|+|. +|+||||+...|++.+
T Consensus 5 ~~i~lvGp-sGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGP-SGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCCHHHHHHHHHhhC
Confidence 35788887 8999999999999987
No 465
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.09 E-value=23 Score=34.95 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=18.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
-.+|+|. .|+|||+++..++..+
T Consensus 7 i~l~tG~-pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGT-PGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHC
T ss_pred EEEEEeC-CCCCHHHHHHHHHHHH
Confidence 6778887 8999999988865554
No 466
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=45.95 E-value=12 Score=42.00 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.+.|-||||+ ||||+|..|...|. ..|++++.+
T Consensus 114 ~~vI~VTGTn---GKTTTt~ml~~iL~-----~~G~~~~~~ 146 (469)
T 1j6u_A 114 KEEFAVTGTD---GKTTTTAMVAHVLK-----HLRKSPTVF 146 (469)
T ss_dssp CCEEEEECSS---SHHHHHHHHHHHHH-----HTTCCCEEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHH-----HcCCCceEE
Confidence 4689999995 99999999999994 778887654
No 467
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=45.68 E-value=14 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.+++..+
T Consensus 54 ~~~vll~Gp-~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGP-PGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESS-SSSCHHHHHHHHHHHT
T ss_pred CCeEEEECc-CCCCHHHHHHHHHHHh
Confidence 468999998 8999999999999987
No 468
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.59 E-value=12 Score=36.78 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.+.|.|. +|+||||++..|+..+.
T Consensus 24 ~v~I~G~-sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGA-PGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECC-TTSCTHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh
Confidence 5778886 89999999999999993
No 469
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.54 E-value=16 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.++++|. +|+|||+++..|++.+. +.+..+.++.
T Consensus 49 ~~ll~G~-~GtGKt~la~~la~~~~-----~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGP-TGVGKTELAKTLAATLF-----DTEEAMIRID 82 (311)
T ss_dssp EEEEESC-SSSSHHHHHHHHHHHHH-----SCGGGEEEEE
T ss_pred EEEEECC-CCcCHHHHHHHHHHHHc-----CCCcceEEee
Confidence 6899997 89999999999999983 4444444443
No 470
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.46 E-value=13 Score=37.43 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.7
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|.|. +|+|||+++.+|+..+
T Consensus 50 ~g~ll~G~-~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGP-PGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECC-TTSSHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHh
Confidence 46999997 8999999999999987
No 471
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=44.73 E-value=19 Score=38.67 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.++|+|. +|+|||+++.+|++.+
T Consensus 116 ~~~~vLl~Gp-pGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGP-PGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESS-TTSSHHHHHHHHHHHT
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHc
Confidence 3568999998 8999999999999887
No 472
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=44.44 E-value=19 Score=36.19 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=25.0
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEce
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~KP 79 (818)
+.++|++ .||+|||.++..++..+ +.++.++=|
T Consensus 109 ~~~ll~~-~tG~GKT~~a~~~~~~~--------~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVL-PTGSGKTHVAMAAINEL--------STPTLIVVP 141 (237)
T ss_dssp SEEEEEE-SSSTTHHHHHHHHHHHS--------CSCEEEEES
T ss_pred CCEEEEe-CCCCCHHHHHHHHHHHc--------CCCEEEEeC
Confidence 4466666 68999999998887665 457777766
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=44.35 E-value=17 Score=36.33 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
...+.|+|. .|+||||++..|...|
T Consensus 16 ~~~i~i~G~-~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGP-ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECS-SCSSHHHHHHHHHHHH
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHc
Confidence 346888987 8999999999999888
No 474
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=44.29 E-value=21 Score=37.28 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|.|. +|+|||+++.+|+..+
T Consensus 49 ~~~vLL~Gp-~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGP-PGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECS-SSSSHHHHHHHHHHHT
T ss_pred CceEEEECC-CCcCHHHHHHHHHHHh
Confidence 357999997 8999999999999987
No 475
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=43.63 E-value=15 Score=40.55 Aligned_cols=35 Identities=6% Similarity=0.033 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
..+.|-|||| -||||++..|...|. ..|++|+.|.
T Consensus 38 ~~~vI~VtGT---nGKtTT~~~l~~iL~-----~~G~~vg~~~ 72 (428)
T 1jbw_A 38 QGRYIHVTGT---NGKGSAANAIAHVLE-----ASGLTVGLYT 72 (428)
T ss_dssp SSCEEEEECS---SCHHHHHHHHHHHHH-----HTTCCEEEEC
T ss_pred cCcEEEEECC---CChHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 3568999999 599999999999994 7789998775
No 476
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.53 E-value=18 Score=40.35 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++++|. +|+|||+++..|++.+
T Consensus 51 ~~vLL~Gp-pGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGP-PGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHT
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHh
Confidence 57999998 9999999999999998
No 477
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.33 E-value=20 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..++|+|- +|+|||+++.++....
T Consensus 26 ~~vLi~Ge-~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGD-SGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESC-TTSCHHHHHHHHHHHS
T ss_pred CcEEEECC-CCchHHHHHHHHHHhC
Confidence 35899997 8999999999999987
No 478
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=43.31 E-value=21 Score=38.15 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+-|+|. +|+||||++..|...+
T Consensus 94 iigI~Gp-sGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGS-VAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHh
Confidence 4666665 8999999999999998
No 479
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=43.22 E-value=19 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.+.|.|. .|+|||++++.++..+. +.|.+|.|+-
T Consensus 63 iv~I~G~-pGsGKTtLal~la~~~~-----~~g~~vlyi~ 96 (349)
T 2zr9_A 63 VIEIYGP-ESSGKTTVALHAVANAQ-----AAGGIAAFID 96 (349)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 4666665 89999999999998774 6688888876
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=43.03 E-value=14 Score=39.45 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|+ ||+|||+++..|++.+
T Consensus 5 ~i~i~Gp-tgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGP-TAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECC-TTSCHHHHHHHHHHTT
T ss_pred EEEEECC-CcCCHHHHHHHHHHhC
Confidence 4667777 9999999999999887
No 481
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=42.74 E-value=22 Score=38.59 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.++++.+
T Consensus 148 ~~~vLL~Gp-pGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGP-PGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESS-TTSCHHHHHHHHHHHT
T ss_pred CceEEEECC-CCCCHHHHHHHHHHhh
Confidence 468999997 9999999999998887
No 482
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=42.71 E-value=18 Score=37.26 Aligned_cols=54 Identities=7% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHhccCCCCCCCCCC-CCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 14 RRILLRLFHHSTFHPQPLDL-PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
++.-++|........+.... ....+.++|||.++++|+. |++.|. ++|.+|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~k~vlITGasggIG~~-----la~~L~-----~~G~~V~~~ 74 (285)
T 2c07_A 20 RHMKLEFMNLLSENKKENYYYCGENKVALVTGAGRGIGRE-----IAKMLA-----KSVSHVICI 74 (285)
T ss_dssp ---------------CCCCCCCCSSCEEEEESTTSHHHHH-----HHHHHT-----TTSSEEEEE
T ss_pred ccccchhhccCCccccccccccCCCCEEEEECCCcHHHHH-----HHHHHH-----HcCCEEEEE
Confidence 33445666554332222212 2334789999999999984 456663 678887664
No 483
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=42.68 E-value=10 Score=38.81 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHhccCCCCCCCCCCCCCCCeEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
|+|-|||--.-..+..--+...+++ ...|.++|||.++|+|+ ++++.|. ++|.+|...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~m~--l~~k~vlITGas~gIG~-----~la~~l~-----~~G~~V~~~ 59 (271)
T 4iin_A 2 HHHHHHSSGVDLGTENLYFQSNAMQ--FTGKNVLITGASKGIGA-----EIAKTLA-----SMGLKVWIN 59 (271)
T ss_dssp ----------------------CCC--CSCCEEEETTCSSHHHH-----HHHHHHH-----HTTCEEEEE
T ss_pred CcccccccccccCcceehhhhhhcc--cCCCEEEEECCCcHHHH-----HHHHHHH-----HCCCEEEEE
Confidence 6677777654333333333233333 44578999999999997 4555663 567777653
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=42.42 E-value=10 Score=38.58 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++.+|+..+
T Consensus 45 ~~vll~G~-~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGP-PGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCS-SCSSHHHHHHHHHHHH
T ss_pred ceEEEECC-CCCcHHHHHHHHHHHh
Confidence 45888887 8999999999999988
No 485
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=42.25 E-value=13 Score=39.61 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHhh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSFL 63 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l~ 63 (818)
.+.++|+|. +|+|||+++..+++.|.
T Consensus 45 ~~~lli~Gp-PGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNA-DDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCEEEEECC-CSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH
Confidence 347999998 99999999999999995
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=42.18 E-value=17 Score=35.48 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. +|+|||+++..|.+.+
T Consensus 5 ~i~i~G~-~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGP-AAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECC-TTSSHHHHHHHHHHHT
T ss_pred EEEEECC-CCCCHHHHHHHHHHhc
Confidence 4778886 8999999999998887
No 487
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=41.88 E-value=15 Score=42.57 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g-~~v~~~ 77 (818)
.|+|+|. +|+||||++..|.+.|. .+| ..+.++
T Consensus 398 ~I~l~Gl-sGSGKSTiA~~La~~L~-----~~G~~~~~~l 431 (573)
T 1m8p_A 398 TIFLTGY-MNSGKDAIARALQVTLN-----QQGGRSVSLL 431 (573)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHCSSCEEEE
T ss_pred EEEeecC-CCCCHHHHHHHHHHHhc-----ccCCceEEEE
Confidence 5888998 78999999999999993 345 555444
No 488
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.72 E-value=16 Score=38.87 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=22.1
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++..+++.+
T Consensus 46 ~~vll~G~-~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGL-TGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CEEEEEEC-TTSSHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHH
Confidence 47999998 8999999999999988
No 489
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.64 E-value=18 Score=37.55 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.++|+|. +|+|||+++..+++.+
T Consensus 39 ~~vll~G~-~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGP-PGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECC-TTCCCHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 46899998 8999999999999988
No 490
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.54 E-value=14 Score=35.35 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.|+|. +|+||||+...|+..+
T Consensus 4 ii~l~G~-~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGP-AGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-CCCcHHHHHHHHhccc
Confidence 4677887 8999999999997754
No 491
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=41.44 E-value=26 Score=39.98 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=25.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~K 78 (818)
.|+++|- .|+||||++..|.+.|. ..+.++..|-
T Consensus 37 lIvlvGl-pGSGKSTia~~La~~L~-----~~~~d~~v~s 70 (520)
T 2axn_A 37 VIVMVGL-PARGKTYISKKLTRYLN-----WIGVPTKVFN 70 (520)
T ss_dssp EEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hcCCCeEEec
Confidence 4677777 99999999999999983 3455554443
No 492
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=41.04 E-value=16 Score=36.68 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|.|. .|+|||+++.+|++.+
T Consensus 58 kn~ili~GP-PGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGP-ANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESC-GGGCHHHHHHHHHHHH
T ss_pred ccEEEEECC-CCCCHHHHHHHHHHHh
Confidence 456889998 8999999999999999
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=40.89 E-value=24 Score=37.88 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
.+.++|+|. +|+|||+++.+++..+
T Consensus 84 ~~~iLL~Gp-pGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGP-PGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CceEEEECC-CCCcHHHHHHHHHHHh
Confidence 357999997 8999999999999998
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=40.83 E-value=16 Score=36.70 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
-|.|.|. .|+||||++..|.+.|
T Consensus 4 ~i~~~G~-~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGN-IAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEC-TTSSHHHHHHHHHHHC
T ss_pred EEEEEcC-CCCCHHHHHHHHHHHc
Confidence 4777887 8999999999999998
No 495
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=40.64 E-value=22 Score=36.11 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCc-eeEEc
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKK-FVYLK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~-v~~~K 78 (818)
-|.|.|. .|+||||++..|.+.|. .+|.+ +...+
T Consensus 29 ~i~~eG~-~GsGKsT~~~~l~~~l~-----~~~~~~~~~~r 63 (236)
T 3lv8_A 29 FIVIEGL-EGAGKSTAIQVVVETLQ-----QNGIDHITRTR 63 (236)
T ss_dssp EEEEEES-TTSCHHHHHHHHHHHHH-----HTTCCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCCeeeeec
Confidence 4666776 78999999999999994 67888 66655
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=40.49 E-value=20 Score=36.21 Aligned_cols=34 Identities=18% Similarity=0.015 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeE-Ec
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVY-LK 78 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~-~g~~v~~-~K 78 (818)
-|.|.|. .|+||||++..|.+.|. . +|.+|.. .+
T Consensus 23 ~i~~~G~-~g~GKst~~~~l~~~l~-----~~~g~~v~~~tr 58 (223)
T 3ld9_A 23 FITFEGI-DGSGKTTQSHLLAEYLS-----EIYGVNNVVLTR 58 (223)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HHHCGGGEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh-----hccCceeeEeee
Confidence 3566676 79999999999999994 5 7888877 54
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=40.17 E-value=7 Score=40.00 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=21.0
Q ss_pred CCeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 37 ~~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.-|.|.|. .|+||||++..|.+.|
T Consensus 24 ~~~I~ieG~-~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGN-IAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECS-TTSSHHHHHTTTGGGC
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHhc
Confidence 445777787 8999999999998887
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=40.09 E-value=20 Score=41.25 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 003466 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (818)
Q Consensus 39 ~~~i~gt~t~~GKT~v~~~L~~~l~~~~~~~~g~~v~~~ 77 (818)
.|+++|. +|+||||++..|.+.|. .+|.++.++
T Consensus 374 ~I~l~G~-~GsGKSTia~~La~~L~-----~~G~~~~~l 406 (546)
T 2gks_A 374 CVWLTGL-PCAGKSTIAEILATMLQ-----ARGRKVTLL 406 (546)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEccCC-CCCCHHHHHHHHHHHhh-----hcCCeEEEE
Confidence 5788886 78999999999999983 567665444
No 499
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=39.72 E-value=25 Score=36.12 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=19.8
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
..+.|.|. +|+||||++..++..+
T Consensus 31 ~i~~i~G~-~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSP-GGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHH
Confidence 34666666 8999999999999877
No 500
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=39.62 E-value=26 Score=38.96 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=22.3
Q ss_pred CeEEEEeCCCCCcHHHHHHHHHHHh
Q 003466 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (818)
Q Consensus 38 ~~~~i~gt~t~~GKT~v~~~L~~~l 62 (818)
+.+++.|. +|+|||+++.+|++.+
T Consensus 64 ~~iLl~Gp-pGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGP-PGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CcCCHHHHHHHHHHHh
Confidence 47899998 9999999999999999
Done!