RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003466
(818 letters)
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 764 bits (1973), Expect = 0.0
Identities = 534/849 (62%), Positives = 627/849 (73%), Gaps = 67/849 (7%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP 66
HH+ H ++ R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 67 TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKS 126
SS+ K +YLKPIQTG+P DSDSRF+F+KL SLSLRR P S + S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLSLRRQIPIS-------------ISNS 110
Query: 127 FLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
L S + N E+ + N + + EL+CKTL+AWE A+SPHLAAER
Sbjct: 111 VLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAER 170
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E V DS V++ + KCL++ +E +SE+ ++LC+VETAGGVASPGPSG+LQCDLY
Sbjct: 171 E-NATVEDSVVLQMIEKCLKEEMECGVKSEKS--DLLCLVETAGGVASPGPSGTLQCDLY 227
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
RPFRLPGILVGDGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VP
Sbjct: 228 RPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVP 287
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
VLVLPP+P+D S+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFT
Sbjct: 288 VLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFT 347
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QHKLV +E VTVIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MG
Sbjct: 348 QHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
YTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF
Sbjct: 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC 467
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH +F EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGL
Sbjct: 468 VDH----NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTVF+ N W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S+
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSK 581
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
+L ++ G++ S +GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGF
Sbjct: 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGF 641
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---------- 716
WRLGVETT +LLGC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 642 WRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSY 701
Query: 717 -----------------------------------LWDLELIQQISSHRTVQRVVALGTL 741
LWD EL+QQISSH VQRVV +GTL
Sbjct: 702 SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL 761
Query: 742 CAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGPCSSPEVCSQLLLKL 801
A+EL+A N+GY SLYA SLL LREDG++ RPLGNVIYLMCGPC+SPE+C +LL KL
Sbjct: 762 FALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKL 821
Query: 802 YQRLEEFDK 810
Y+RL EF++
Sbjct: 822 YKRLGEFNR 830
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 226 bits (578), Expect = 3e-66
Identities = 117/498 (23%), Positives = 176/498 (35%), Gaps = 138/498 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMTS--PLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ + + +D+GS A+E
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVE 117
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----S 530
+A+KMA + + G+ + L + YHGDT GAM P S
Sbjct: 118 VAMKMALQYWQA--------KGEARQ------RFLTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
+ G+L + LF P M EW +E
Sbjct: 164 LWKGYLPE------NLFAPAPQSRMD--------GEW---------------------DE 188
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
RD A + +++ + I A+IIEP+V AGGM M P + + + K C
Sbjct: 189 RDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
I +I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 711 FVGDS------------------------KLWD----LELIQQIS-----------SHRT 731
+ + + + I
Sbjct: 296 ISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEM 355
Query: 732 VQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CS 789
V V LG + +E A+L K E GV++RP G +IYLM P
Sbjct: 356 VADVRVLGAIGVVETTHPV--------NMAALQKFFVEQGVWIRPFGKLIYLM--PPYII 405
Query: 790 SPEVCSQLLLKLYQRLEE 807
P+ +L + + +++
Sbjct: 406 LPQQLQRLTAAVNRAVQD 423
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 221 bits (566), Expect = 2e-64
Identities = 113/497 (22%), Positives = 179/497 (36%), Gaps = 127/497 (25%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
W P++ + V + G ++ +D + + DA +SWWT G P
Sbjct: 41 LWHPYSSIGR-EAVSPVVAVAAHGAWLTLIRDGQPIEV---LDAMSSWWTAIHGHGHP-- 94
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
L + + HVMF +EPA A+LL+ G +FSD+GS ++E
Sbjct: 95 ----ALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVE 149
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+A KMA + + G+ K +++ +G YHGDT AM
Sbjct: 150 VAAKMALQYW----------RGRGLPGKR---RLMTWRGGYHGDTFLAMSIC-------- 188
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
DP +S W L + F + Y+ S+
Sbjct: 189 -------------DPHGGM--HSLWTDVLAAQV-----------FAPQVPRDYDPAYSAA 222
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
+ + + + + A+++EPVV AGGM DP + L C+ ++
Sbjct: 223 FEAQLAQHAGE-------------LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV 269
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 716 ------------------------KLWD----LELIQQIS-----------SHRTVQRVV 736
+L I +++ + V V
Sbjct: 330 AGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVR 389
Query: 737 ALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYLMCGP--CSSPEVC 794
G + IE A + GV++RP N++Y M P +P
Sbjct: 390 VCGAIGVIECDRPV--------DLAVATPAALDRGVWLRPFRNLVYAM--PPYICTPAEI 439
Query: 795 SQLLLKLYQRLEEFDKV 811
+Q+ + + +
Sbjct: 440 TQITSAMVEVARLVGSL 456
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 214 bits (547), Expect = 9e-62
Identities = 115/513 (22%), Positives = 189/513 (36%), Gaps = 119/513 (23%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT- 410
D+ +++ + W PFTQ K +E +I+S G V ++ D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMK-DYDENPLIIES--GTGIKVKDINGKEYY----DGFSSVWLN 56
Query: 411 -QG---PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
G EL + + H PA + AE L+ K +R ++
Sbjct: 57 VHGHRKK------ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFY 109
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SD+G+ A+EIALKMAF+ + EK K +A+K YHGDT+GA+
Sbjct: 110 SDSGAEAMEIALKMAFQYW----------KNIGKPEKQ---KFIAMKNGYHGDTIGAVSV 156
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
LF + + + E I + R E
Sbjct: 157 ---------------GSIELF---------HHVYGPLMFE------SYKAPIPYVYRSES 186
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
+ + + ++ I AL IE +V A GM ++ + +
Sbjct: 187 GDPDECRDQCLRELAQLLEEH---------HEEIAALSIESMVQGASGMIVMPEGYLAGV 237
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +I DEV TGF R G + PD+ GK +TGG +P+A T AT
Sbjct: 238 RELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED 297
Query: 707 VFDSFVGDS--------------------------KLWD----LELIQQIS--------- 727
++ +F D L++ +E + + S
Sbjct: 298 IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD 357
Query: 728 --SHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIY 782
+ V + LG +C EL + + K+RE G+ RPLG+VI
Sbjct: 358 LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIA 417
Query: 783 LMCGP--CSSPEVCSQLLLKLYQRLEEFDKVEE 813
+ P S+ E S+++ + Q + E +E+
Sbjct: 418 FL--PPLASTAEELSEMVAIMKQAIHEVTSLED 448
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 135 bits (342), Expect = 4e-34
Identities = 88/526 (16%), Positives = 156/526 (29%), Gaps = 169/526 (32%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-------- 412
W P+T ++ +I + E + D+ K D+ + WT G
Sbjct: 19 HWMPYTANRNF-LRDPRLIVA--AEGSWLVDDKGRKVY----DSLSGLWTCGAGHTRKEI 71
Query: 413 PDATLQIELARDMG----YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSD 468
+A +A+ + ++GH + + AE + + +F+D
Sbjct: 72 QEA-----VAKQLSTLDYSPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTD 117
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-- 526
+GS A+KM + G+ K K++ YHG +
Sbjct: 118 SGSECALTAVKMVRAYW--------RLKGQ--ATKT---KMIGRARGYHGVNIAGTSLGG 164
Query: 527 --------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
P L + P ++L + L I H
Sbjct: 165 VNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG------GIALADELLKLIELHDAS 218
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
I A+ +EP+ + G+ +V
Sbjct: 219 N----------------------------------------IAAVFVEPLA-GSAGV-LV 236
Query: 639 DPL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
P +R +E C I ++FDEV TGF R G AD G PD+ C K +T G
Sbjct: 237 PPEGYLKRN--REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 696 IPLAATLATNAVFDSFVGDSK-----------------------LWDLELIQQ------- 725
IP+ A +A+ ++ +F+ L L L+Q+
Sbjct: 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSV 354
Query: 726 -------------ISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGV 772
I + V + G AI++ G + L + G
Sbjct: 355 AEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAP---RDGDAIVRPFEAGMALWKAGF 411
Query: 773 YMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
Y+R G+ + P ++ D++ + +
Sbjct: 412 YVRFGGDTLQFG--P---TFNSKP---------QDLDRLFDAVGEV 443
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 131 bits (332), Expect = 1e-32
Identities = 83/515 (16%), Positives = 153/515 (29%), Gaps = 142/515 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD-- 414
+ FT + + V+ GE + +++ DA + W
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGRRYL----DANSGLWNMVAGFDHKGL 82
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q + + +E L++ + R +++++
Sbjct: 83 IDAAKAQ---YERFPGYHAFFGRMS--------DQTVMLSEKLVEVSPFD-SGRVFYTNS 130
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529
GS A + +KM + GK +K K+L +YHG T +
Sbjct: 131 GSEANDTMVKMLWFLH--------AAEGK--PQK---RKILTRWNAYHGVTAVSASM--- 174
Query: 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
TG +P+ +F P LP H +
Sbjct: 175 ---TG---KPY---NSVF-GLP------------LPG------FVHLTCPHY------WR 200
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH-MVDPLFQRILVK 648
+ + + + +++ L + + + I EPV+ AGG+ FQ I
Sbjct: 201 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM-GAGGVIPPAKGYFQAI--L 257
Query: 649 E-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ IPVI DEV GF R G PD K LT G P+ A + +
Sbjct: 258 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPEL 317
Query: 708 FDSFVGDSKLWD------------------LELIQQISSHRTVQRVVALGT--------- 740
+ + L+ I + + + V L
Sbjct: 318 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 377
Query: 741 --------------LCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMRPLGNVIYL 783
+ A+E +A+ + + + G+ RPLG + L
Sbjct: 378 AERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVL 437
Query: 784 MCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
P P + ++ + D++ +KL+
Sbjct: 438 C--P---PFILTE---------AQMDEMFDKLEKA 458
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 124 bits (313), Expect = 2e-30
Identities = 89/530 (16%), Positives = 150/530 (28%), Gaps = 173/530 (32%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPD-- 414
W + TV E V Q +++ D + W G
Sbjct: 20 VWHGMRPFS---PNSTTVGAK--AEGCWVEDIQGKRYL----DGMSGLWCVNSGYGRKEL 70
Query: 415 ---ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSD 468
A Q + + Y H EPA++ AE L + W +FS+
Sbjct: 71 AEAAYKQ---LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSN 114
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-----LGA 523
+GS A E A K+A + + G+ + K ++ YHG+T
Sbjct: 115 SGSEANETAFKIARQYY--------AQKGE--PHR---YKFMSRYRGYHGNTMATMAATG 161
Query: 524 MEA-----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
+ + + P + + + + +
Sbjct: 162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI-------YDVECVKEVDRVMTWEL-- 212
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
E I A I+EP++ G +
Sbjct: 213 ----------SET----------------------------IAAFIMEPIITGGGILMAP 234
Query: 639 DPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ + E CQ +I DEV GF R G PDI K +T +P
Sbjct: 235 QDYMKAV--HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLP 292
Query: 698 LAATLATNAVFDSFVGDSKLWD-----------------LELIQQISSHRTVQRVVALGT 740
L+AT ++++F G + L+ ++ I + ++R +G+
Sbjct: 293 LSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGS 352
Query: 741 ------------------------LCAIELQA-AGCNAGYGSLYAASLLKKLREDGVYMR 775
L IEL + AS++ +E G+ +
Sbjct: 353 LLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG 412
Query: 776 PLG-------NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
G N++ L P P V S EE V LK+
Sbjct: 413 RNGMTTAGYNNILTLA--P---PLVISS---------EEIAFVIGTLKTA 448
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 117 bits (295), Expect = 6e-28
Identities = 90/524 (17%), Positives = 154/524 (29%), Gaps = 162/524 (30%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PFT + + V+ GE ++ + NK I D A W D
Sbjct: 18 HLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWCVNVGYGRKDF 71
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q ++ + T + H +E + LL + G R +++++
Sbjct: 72 AEAARRQ---MEELPFYNTFFKTTH--------PAVVELSSLLAEVTPAG-FDRVFYTNS 119
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--- 526
GS +++ ++M R + D GK EK ++ YHG T+G
Sbjct: 120 GSESVDTMIRMVRRYW--------DVQGK--PEKK---TLIGRWNGYHGSTIGGASLGGM 166
Query: 527 -------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
P P ++QPW+ G + P + + WL KI+E
Sbjct: 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDE-------FGVVAARWLEEKILEIGADK 219
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
+ A + EP+ AGG+ +V
Sbjct: 220 ----------------------------------------VAAFVGEPIQ-GAGGV-IVP 237
Query: 640 PL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
P + I + C+ + ++ DEV GF R G G PD+ K L+ G +
Sbjct: 238 PATYWPEI--ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 697 PLAATLATNAVFDSFVGDSKL--------------------------------------- 717
P+ A V + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPY 355
Query: 718 WDLELIQQISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYM 774
+ S V V +G + A L +A + + M
Sbjct: 356 MQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIM 415
Query: 775 RPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
R G+ I + P V ++ E D++ + C
Sbjct: 416 RACGDHIVS-----APPLVMTR---------AEVDEMLAVAERC 445
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 114 bits (288), Expect = 4e-27
Identities = 89/522 (17%), Positives = 158/522 (30%), Gaps = 160/522 (30%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PF+ + + EE VI + + + + DA A W +
Sbjct: 23 HLHPFSANNALGEEGTRVITR--ARGVWLNDSEGEEIL----DAMAGLWCVNIGYGRDEL 76
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q R++ Y T + H PA+ A+ L + + +F+
Sbjct: 77 AEVAARQ---MRELPYYNTFFKTTH--------VPAIALAQKLAELAPGD-LNHVFFAGG 124
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----- 524
GS A + ++M + G+ EK +++ K +YHG T+ +
Sbjct: 125 GSEANDTNIRMVRTYW--------QNKGQ--PEKT---VIISRKNAYHGSTVASSALGGM 171
Query: 525 ----EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
P + QP + G +DP + L+ L I+E +
Sbjct: 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE-------FGLARARELEEAILELGENR- 223
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+ A I EPV AGG+ +V P
Sbjct: 224 ---------------------------------------VAAFIAEPVQ-GAGGV-IVAP 242
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ I + C I +I DEV GF R G +G P I K L+ G P
Sbjct: 243 DSYWPEI--QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 698 LAATLATNAVFDSFVGDS---------------------------KLWD----------L 720
+ ++ + V D + D
Sbjct: 301 IGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLK 360
Query: 721 ELIQQISSHRTVQRVVALGTLCAIELQAAGCN----AGYGSLYAASLLKKLREDGVYMRP 776
E + ++ H V +G + +I L + A ++ + + MR
Sbjct: 361 EKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRH 420
Query: 777 LGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+G+ + + S P V + E D++ +++
Sbjct: 421 VGDRMII-----SPPLVITP---------AEIDEMFVRIRKS 448
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 112 bits (283), Expect = 2e-26
Identities = 96/520 (18%), Positives = 160/520 (30%), Gaps = 146/520 (28%)
Query: 361 FWWPFTQHK--LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD 414
F+ P T E ++ GE +V+ + K I DA A + G
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGRKSI----DAFAGLYCVNVGYGRQ 70
Query: 415 -----ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
Q A+++ Y G E ++ A++++ KG SR YF
Sbjct: 71 KIADAIATQ---AKNLAYYHAYVGHGT--------EASITLAKMIIDRAPKG-MSRVYFG 118
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
+GS A E +K+ + + LG+ EK K+++ YHG +
Sbjct: 119 LSGSDANETNIKLIWYYN--------NVLGR--PEKK---KIISRWRGYHGSGVMTGSL- 164
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
TG + F D P V H + +
Sbjct: 165 -----TG---LDLF--HNAF-DLP------------RAP------VLHTEAPYY------ 189
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRIL 646
+ D S +S + + L + + I A I EP++ GG+ +++I
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI- 247
Query: 647 VKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
+ + + ++ DEV TGF RLG +D G PD+ K LT PL+ + +
Sbjct: 248 -QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVAD 306
Query: 706 AVFDSFVGDSKLWD------------------LELIQQISSHRTVQRVVALGT------- 740
V+ V S + ++ I V G
Sbjct: 307 RVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELA 366
Query: 741 -----------------LCAIEL---QAAGCNAGYGSLYAASLLKKLREDGVYMR--PLG 778
L A+E + + L GV R P G
Sbjct: 367 KAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQG 426
Query: 779 NVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+++ P P ++ E+ D V K
Sbjct: 427 DILGFA--P---PLCLTR---------EQADIVVSKTADA 452
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 106 bits (268), Expect = 2e-24
Identities = 85/526 (16%), Positives = 156/526 (29%), Gaps = 165/526 (31%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
P + + + A V+ E V+ + + I D A W +
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGRRLI----DGPAGMWCAQVGYGRREI 75
Query: 415 ---ATLQI-ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
Q L + PA AE + +R +F+ G
Sbjct: 76 VDAMAHQAMVLP---YASPWYMAT--------SPAARLAEKIATLTPGD-LNRIFFTTGG 123
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---- 526
STA++ AL+ + + LG+ +K +++ YHG T
Sbjct: 124 STAVDSALRFSEFYN--------NVLGR--PQKK---RIIVRYDGYHGSTALTAACTGRT 170
Query: 527 ------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
FL P ++ L + +I T
Sbjct: 171 GNWPNFDIAQDRISFLSSPNP-RHAGNRSQEA-------FLDDLVQEFEDRIESLGPDT- 221
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
I A + EP++ A+GG+ ++ P
Sbjct: 222 ---------------------------------------IAAFLAEPIL-ASGGV-IIPP 240
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVI 696
R K C+ I I DEV TGF R G ++ + G VPDI + K +T G +
Sbjct: 241 AGYHARF--KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 697 PLAATLATNAVFDSFVGDSK---------------------LWDLELIQQ---------- 725
PL + AV G++ L ++EL+++
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM 358
Query: 726 ----------ISSHRTVQRVVALGTLCAIEL---QAAGCNAGYGSLYAASLLKKLREDGV 772
+ V ++G + ++ + + ++ E G+
Sbjct: 359 ADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGL 418
Query: 773 YMRPLGNVIYLMCGPCSSPEVCSQLLLKLYQRLEEFDKVEEKLKSC 818
+RPLG++ + S P + S+ + D++ ++
Sbjct: 419 IVRPLGDLCVI-----SPPLIISR---------AQIDEMVAIMRQA 450
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 101 bits (254), Expect = 6e-23
Identities = 75/443 (16%), Positives = 123/443 (27%), Gaps = 133/443 (30%)
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
++F + E A L + VG R + GS A E A+K+A R++
Sbjct: 64 VHGSQFSS--------DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA-RQY- 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
+ + + KV+ SYHG +LG++ A +G
Sbjct: 113 --------HVERGEPGRF---KVITRVPSYHGASLGSLAA------SG---MGARRELYT 152
Query: 547 FLDPPTVF-----MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
L P + ++ E L + + T
Sbjct: 153 PLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPET---------------------- 190
Query: 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRILVKE-CQNRKIPVIF 659
+ A + EPVV A+ ++R+ ++ C I I
Sbjct: 191 ------------------VAAFMAEPVVGASDAALAPAPGYYERV--RDICDEAGIIFIA 230
Query: 660 DEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLW 718
DEV +G R G G PDIA GK L G PLA LA V+++ +G S +
Sbjct: 231 DEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAF 290
Query: 719 D---------------LELIQQISSHRTVQRVVALGT----------------------- 740
L ++ + G
Sbjct: 291 MHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG 350
Query: 741 -LCAIELQAAGCNAGYGSL-YAASLLKKLREDGVYMRPLGNVIYLMCGP---CSSPEVCS 795
L + L + + A+ + + G+ P G P +
Sbjct: 351 LLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSIT 410
Query: 796 QLLLKLYQRLEEFDKVEEKLKSC 818
E D + L
Sbjct: 411 A---------AEVDGLLALLAGA 424
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 98.8 bits (247), Expect = 5e-22
Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 81/293 (27%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A + H +F E + P ++ A L G RA G+ + E A++MA + +
Sbjct: 72 AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA-KLVT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
GK +++ S+HG T A A T G G
Sbjct: 127 --------GKY--------EIVGFAQSWHGMTGAAASA------TY---SAGRKGVGPA- 160
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
F Y ++ ++ + E+ Y +S
Sbjct: 161 -AVGSFAIPAPFTYRPRF--------------ERNGAYDYLAELDYAFDLIDRQSS---- 201
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662
G + A I EP++ ++GG+ + + L ++C+ R + +I DE
Sbjct: 202 ---------------GNLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 663 FTGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
TG R G + G PDI K L G +PLAA + + A+ +
Sbjct: 246 QTGVGRTGTMFACQRD----GVTPDILTLSKTLGAG-LPLAAIVTSAAIEERA 293
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 94.0 bits (234), Expect = 7e-22
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R S + V + + E SPH+ + +E G +S V+ + L +
Sbjct: 60 RNSSLQLDY--ATVN--PYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQAD--- 110
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+VE AGG +P D +LP ILV +LG I+ + +
Sbjct: 111 ---------WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 161
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSSN 319
++ G + V M+ L P+L +P L ++ N
Sbjct: 162 IQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212
Score = 41.6 bits (98), Expect = 4e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 93.6 bits (233), Expect = 1e-21
Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
+ ++ + L ++ +AV+PH+ A + IE L + + D +
Sbjct: 61 NAYKHKFTA--AEIN--LISFNQAVAPHIIAAKT-----KVDISIENLKQFIEDKYNQDL 111
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ + +E AGG+ +P + Q DL + ++P +LV ++G I+ T+
Sbjct: 112 D--------ILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINE 163
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSS----NDLMEW 324
L + + D + ++ + + + ++
Sbjct: 164 LNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKISRNADYLDFIDLSKILIS 223
Query: 325 FDES 328
+E+
Sbjct: 224 PEEN 227
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
F I +T +GKT +S L N K + LKP+ +G S+
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVC-----EHQNIKSLCLKPVASGQSQFSE 51
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 96.5 bits (241), Expect = 2e-21
Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 69/291 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H + P LE A+ L+ + + +FS++G+ AIE ++K+ +
Sbjct: 72 MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-KN---- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSGRGL 546
T + ++A G +HG T G++ A + + P+
Sbjct: 127 ------------TGRK---YIIAFLGGFHGRTFGSISLTASKAVQRSIV--GPF------ 163
Query: 547 FLDPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSY 603
P V Y + + Y E + D IF ++A
Sbjct: 164 ---MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVA------ 214
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
+ EP + GG + F L K + I ++ DEV
Sbjct: 215 ------------------GIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 664 TGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G R G +E VPD+ K L GG++P+ AT+ +
Sbjct: 256 MGLGRTGKLFAIEN----FNTVPDVITLAKALGGGIMPIGATIFRKDLDFK 302
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 93.4 bits (233), Expect = 3e-20
Identities = 61/289 (21%), Positives = 97/289 (33%), Gaps = 67/289 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
F H F YE + E L + R+ ++GS A+E A+K+A R +
Sbjct: 90 VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA-RSHT-- 146
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
K V+A +YHG T M T + Y G
Sbjct: 147 --------HKP--------AVVAFDHAYHGRTNLTMAL------TA--KVMPYK-DGFGP 181
Query: 549 DPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
P ++ + + + + E + + ++ + +LA
Sbjct: 182 FAPEIYRAPLSYPFRDAEFGKELATDGE---LAAKRAITVIDKQIGADNLA--------- 229
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
A++IEP+ GG + F L+ C+ + I DEV TGF
Sbjct: 230 ---------------AVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273
Query: 667 WRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G E G PD+ K + GG+ PL+A + DS
Sbjct: 274 ARTGAMFACEH----EGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSP 317
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 93.4 bits (233), Expect = 4e-20
Identities = 70/291 (24%), Positives = 97/291 (33%), Gaps = 76/291 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE ++ AELL R ++G+ A+E A+K+A R +
Sbjct: 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA-RLAT-- 149
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSG--R 544
G+ V+A +YHG T M A PY + F P+ R
Sbjct: 150 --------GRP--------AVVAFDNAYHGRTNLTMALTAKSMPYKSQF--GPFAPEVYR 191
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
P + L+ E I + + LA
Sbjct: 192 MPASYP-----LRDEPGLTGEEAARRAI------------SRIETQIGAQSLA------- 227
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A+IIEP+ GG + P F L + I DEV T
Sbjct: 228 -----------------AIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
GF R G E G VPDI K + GG +PL+A + D+
Sbjct: 270 GFARTGAWFASEH----EGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAV 315
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 92.6 bits (231), Expect = 5e-20
Identities = 71/287 (24%), Positives = 103/287 (35%), Gaps = 71/287 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H F YEP LE E++ Q V +A + GS A+E A+K+A R +
Sbjct: 70 LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ +A G+YHG T + TG + YS G+ L
Sbjct: 127 --------KRS--------GTIAFSGAYHGRTHYTLAL------TG--KVNPYS-AGMGL 161
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ P L+ + S IF + D+A
Sbjct: 162 MPGHVYR------ALYPCPLHGISEDD---AIASIHRIFKNDAAPEDIA----------- 201
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A++IEPV GG + P F + L C I +I DEV +G R
Sbjct: 202 -------------AIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 669 LG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G +E +G PD+ + K + GG PLA V D+
Sbjct: 248 TGTLFAMEQ----MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAV 289
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 88.7 bits (220), Expect = 8e-20
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 161 SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKM 220
+ V++L L + + ++P AAE G+ ++ + + + + D L+
Sbjct: 82 AGVTQLAG--LARYPQPMAPAAAAEHA--GMALPAR--DQIVRLIAD-LDRPGR------ 128
Query: 221 EILCIVETAGGVASP-GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279
L +VE AGG+ G D+ ++V LG ++ T E+L +
Sbjct: 129 --LTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186
Query: 280 DVVAVVF----EDHGLVNE-----VPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDES 328
+V + GLV + ++ +R +P D + FD +
Sbjct: 187 SCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRN 244
Score = 48.6 bits (116), Expect = 2e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 27 HPQPLDLPLSH--------PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
H L + + T +GKT+V A L+S+ A K
Sbjct: 8 HHHSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAA-----RQAGIDVAVCK 62
Query: 79 PIQTGYPHDSD 89
P+QTG D
Sbjct: 63 PVQTGTARGDD 73
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 90.7 bits (226), Expect = 2e-19
Identities = 60/293 (20%), Positives = 84/293 (28%), Gaps = 79/293 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
AA PA+ AE LL + +F +GS A E A + K +
Sbjct: 72 AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI-VKAT-- 128
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLF 547
G+ V+A G+YHG T+G+M
Sbjct: 129 --------GRS--------GVIAFAGAYHGCTVGSMAFSGHSVQADAAK----------- 161
Query: 548 LDPPTVF--MYNSKWILSLPEWLYSKIVEHKDITFCSRD-EIFYEERDSSDLASIYSSYI 604
+ Y Y + +
Sbjct: 162 --ADGLILLPYPDP---------YRPYRNDPTGDAILTLLTEKLAAVPAGSIG------- 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A IEP+ + GG+ + F R C+ I V+ DEV
Sbjct: 204 -----------------AAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
G R G E G VPDI GK L GG +PL+A +A + D
Sbjct: 246 GLARSGRLHCFEH----EGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA 293
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 85.3 bits (211), Expect = 1e-18
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+ + + +P +A + E D + L + L + + L IVE AGG
Sbjct: 95 YRYHKVSAPLIAQQEEDPNAPID---TDNLTQRLHN-FTKTYD--------LVIVEGAGG 142
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVF----E 287
+ P D + +L+ LG I+ + LK D +
Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202
Query: 288 DHGLVNEVPLMSYLRNR--VPVLVLPPLPQDSSNDLME 323
+P + R P+++ + + ++
Sbjct: 203 TAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240
Score = 39.5 bits (92), Expect = 0.002
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
NT+ GKT + L+ ++ K + LKPI+TG +
Sbjct: 30 NTNAGKTTCARLLAQYC-----NACGVKTILLKPIETGVNDAIN 68
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 87.7 bits (218), Expect = 2e-18
Identities = 52/293 (17%), Positives = 85/293 (29%), Gaps = 61/293 (20%)
Query: 429 AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484
A + +VY E + +G +F + G+ A+E ALK A
Sbjct: 83 AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAA-FD 141
Query: 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544
+ H + + +VL L+G++HG + + T +P + R
Sbjct: 142 WKSRHN------QAHGIDPALGTQVLHLRGAFHGRSGYTLSL------TN--TKPTITAR 187
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
D P + P DE ++ L
Sbjct: 188 FPKFDWP---------RIDAPYMRP------------GLDEPAMAALEAEALRQA----- 221
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
+ + + + EP + GG P F + + C +IFDEV T
Sbjct: 222 -RAAFETRPHDI----ACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275
Query: 665 GFWRLGVETTADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G T L PDI +GK + + A V
Sbjct: 276 GCGL-----TGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAV 323
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 80.0 bits (198), Expect = 8e-16
Identities = 70/413 (16%), Positives = 117/413 (28%), Gaps = 103/413 (24%)
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
++L + + E +E E LL KG S+ GS + E A
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENA 143
Query: 478 LKMAF-------RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
K F R S + ++ + C + +L+ G++HG T+G +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT---- 199
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
T + + D P K+ L ++ E + + D I
Sbjct: 200 --TH--SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK-ENQQEEARCLEE-VEDLIVKYR 253
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
+ +A +I+EP + + GG + F R L
Sbjct: 254 KKKKTVA------------------------GIIVEP-IQSEGGDNHASDDFFRKLRDIS 288
Query: 651 QNRKIPVIFDEVFTGFWR---------LGVETTADLLGCVPDIACYGK-LLTGGVI---- 696
+ + DEV TG G++ D+ + K ++TGG
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD-------PADVMTFSKKMMTGGFFHKEE 341
Query: 697 ----------------PLAATLATNAVFDSF-----------VGDSKLWDLELIQQISSH 729
P L V + G L L +Q
Sbjct: 342 FRPNAPYRIFNTWLGDPSKNLLL-AEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ 400
Query: 730 RTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPLG-NVI 781
+ RV GT C+ + L+ R GV + G I
Sbjct: 401 F-ISRVRGRGTFCSFDTPDES--------IRNKLISIARNKGVMLGGCGDKSI 444
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 63.7 bits (156), Expect = 1e-10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+ G +V+P F + + VI+DEV T F R DL
Sbjct: 203 VAAILVEPI---VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL 258
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 259 LGVTPDLTALGKVIGGG-LPIGA 280
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 63.7 bits (156), Expect = 1e-10
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG M+ + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
+PD+ C GK++ GG +P+ A
Sbjct: 257 YHVIPDLTCLGKIIGGG-MPVGA 278
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 63.3 bits (155), Expect = 1e-10
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EP+ G + P F L + ++FDEV TGF R+ +
Sbjct: 200 IAGVILEPI---VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 63.4 bits (155), Expect = 1e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV + F R + + I DEV +GF R+G L
Sbjct: 202 IAAFIAEPV---GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQAL 257
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
L PD+ C K GG +P
Sbjct: 258 LDVQPDLTCLAKASAGG-LPGGI 279
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 62.9 bits (154), Expect = 2e-10
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I EPV G ++ P F + L E + + +I DEV TGF RL +L
Sbjct: 200 IAAIIFEPV---VGNAGVLVPTEDFLKAL-HEAKAYGVLLIADEVMTGF-RLAFGGATEL 254
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK+L GG +P AA
Sbjct: 255 LGLKPDLVTLGKILGGG-LPAAA 276
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 62.5 bits (153), Expect = 2e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPV---IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
DI GK++ GG P+ A
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGA 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 3e-10
Identities = 126/714 (17%), Positives = 210/714 (29%), Gaps = 269/714 (37%)
Query: 97 LPSLSLRRNFPSSLILSN-----SILFS-SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFR 150
+ + S R L LS+ +L + F S L ++ +FN L
Sbjct: 1 MDAYSTR-----PLTLSHGSLEHVLLVPTASFFIASQL--QE------QFNK---ILPEP 44
Query: 151 EENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETL-----GKCL 205
E + +E ++ +ELV K L ++++ E V +V+ L
Sbjct: 45 TEGFAADDEPTTPAELVGKFL--------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 206 RD--------GLESESESERGKMEILC------IVETAGGVASPGPS------------- 238
L E+++ K + L + S
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 239 -------GS-------LQCDL---YRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDV 281
G+ L+ DL Y I L + T E + +G ++
Sbjct: 157 VAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 282 VAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIML- 340
+ + + P YL + +P+ S I +
Sbjct: 216 LEWLENP----SNTPDKDYLLS-IPI--------------------------SCPLIGVI 244
Query: 341 -LAYSERIQRLCDM-PKRAGELFWWPFTQHKLVPEEAV---TVI---DSRCGENFSVYQD 392
LA+ +L P GEL + + + + I DS E+F
Sbjct: 245 QLAHYVVTAKLLGFTP---GELR--SYLKGATGHSQGLVTAVAIAETDS--WESF---FV 294
Query: 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHVMFPENVYEPALECAE- 450
K I F + +G + + P ++ E +LE E
Sbjct: 295 SVRKAITVLF-----F----------------IGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 451 -----LLLQGVGKGWASRAYFSDN----GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501
L + + + N +EI+L +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---------------- 377
Query: 502 EKCIELKVLALKG---SYHGDTLGAMEAQAPSPYTGFLQ--QPWYSGRGL-----FLDP- 550
V++ G S +G L +A+APS G Q P +S R L FL P
Sbjct: 378 -------VVS--GPPQSLYGLNLTLRKAKAPS---GLDQSRIP-FSERKLKFSNRFL-PV 423
Query: 551 --PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRD-EI-FYEERDSSDLASIYSSYISQ 606
P ++S +L L +K + +++F ++D +I Y+ D SDL S IS+
Sbjct: 424 ASP----FHSH-LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-LSGSISE 477
Query: 607 NLLQNPGLKVSGCIGALIIEPV----VHAAGGMHMVD--PLFQRILVKECQNRKIPVIFD 660
++ +I PV H++D P
Sbjct: 478 RIVD-----------CIIRLPVKWETTTQFKATHILDFGPG------------------- 507
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTG-GVIPLAATLATNAVFDSFVG 713
G LGV T + G TG VI +A TL N D G
Sbjct: 508 ----GASGLGVLTHRNKDG------------TGVRVI-VAGTLDINP--DDDYG 542
Score = 48.1 bits (114), Expect = 1e-05
Identities = 74/516 (14%), Positives = 132/516 (25%), Gaps = 200/516 (38%)
Query: 364 PFT-QHK------LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDAT 416
P T H LVP +F + + +F + + T
Sbjct: 8 PLTLSHGSLEHVLLVPTA-----------SFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 417 LQIEL-ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
EL + +GY ++ + + L L Y N +
Sbjct: 57 -PAELVGKFLGYVSSLV-----EPSKVGQFDQVLNLCLTE-----FENCYLEGN-----D 100
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
I H + L ++ T +K L +Y
Sbjct: 101 I------------HALAAKLLQENDTT---LVKTKELIKNY------------------- 126
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF-------- 587
+ R + P NS L+ V + + IF
Sbjct: 127 -----ITARIM-AKRPFDKKSNSA--------LFRA-VGEGNAQLVA---IFGGQGNTDD 168
Query: 588 Y-EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
Y EE L +Y +Y +++ ++ + ++
Sbjct: 169 YFEE-----LRDLYQTY------------------HVLVGDLIKFSA------ETLSELI 199
Query: 647 VKECQNRKIPVIFDEVFT-GF----WRLGVETTAD---LLGC---VPDI-----ACY--- 687
+ + ++VFT G W T D LL P I A Y
Sbjct: 200 -------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 688 --------GKL------LTG---GVIPLAATLATNAVFDSFVGDSKLWDLELIQQISSHR 730
G+L TG G++ A +A ++SF S + ++ I
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFF-VSVRKAITVLFFIGVR- 309
Query: 731 TVQRVVALGTLCAIELQAAGCNAGYGS---------LYAASLLKKLREDGVYMRPLGNVI 781
+L L+ + G L + + + ++ P G +
Sbjct: 310 -CYEAYPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQV 366
Query: 782 YL----------MCGPCSSPEVCSQLLLKLYQRLEE 807
+ + GP S L L L +
Sbjct: 367 EISLVNGAKNLVVSGPPQS-------LYGLNLTLRK 395
Score = 38.1 bits (88), Expect = 0.014
Identities = 59/389 (15%), Positives = 89/389 (22%), Gaps = 191/389 (49%)
Query: 2 LRLRRHHYP-------DHHRRILLRLFHHST----FHPQPLDL----------------- 33
LR Y L L + Q L++
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 34 --PLSHP------------TFQIWSANTS------LGKTLVSAGLSSSFLLSPTSS---- 69
P+S P T ++ G T S GL ++ ++ T S
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 70 ---ANKKFVYLKPI----QTGYPHDS-------DS-------------------RFLF-- 94
K L I YP+ S DS +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 95 -----TKLP-----SLSL---RRNF-----PSSLILSNSIL------------------- 117
+ LP +SL +N P SL N L
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 118 ---FSSLF--------------AAKSF---LSSRDLPFQPQKFNSEMYD----LNFREEN 153
FS+ F A+ L ++ F + +YD + R
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR--- 469
Query: 154 RISGEEDSSVSELVCKTLFA----WEEAVS----------PHLAAERESGGVVGDSKVIE 199
S+SE + + WE P GG G +
Sbjct: 470 ----VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--------GGASG----LG 513
Query: 200 TLGKCLRDG----------LESESESERG 218
L +DG L+ + + G
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 37.0 bits (85), Expect = 0.035
Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 77/227 (33%)
Query: 576 KDITFCSRDEIFYEERDSSDL------ASIYSSYISQNLLQNPGLKVSGC------IG-- 621
K+I S F E+ A + L++ GL + +G
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 622 -ALIIEPVVHAAGGMH---MVDPLFQR-ILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
AL A M +V+ +F R + ++ R DE+ +
Sbjct: 1768 AAL-----ASLADVMSIESLVEVVFYRGMTMQVAVPR------DEL--------GRSNYG 1808
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLWDLELI------QQISSHR 730
++ P G V + A V + VG W +E++ QQ
Sbjct: 1809 MIAINP----------GRVAASFSQEALQYVVER-VGKRTGWLVEIVNYNVENQQY---- 1853
Query: 731 TVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRPL 777
V A G L A++ ++L ++ + + L
Sbjct: 1854 ----VAA-GDLRALDT-------------VTNVLNFIKLQKIDIIEL 1882
Score = 33.9 bits (77), Expect = 0.27
Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 79/236 (33%)
Query: 320 DLMEWFDESHNVFDSLKNIMLLAYSERIQRLC-DMPKRAGELFWWPFTQHKLVPEEAVTV 378
DL + + +V++ N Y I + + P F +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK----------- 1682
Query: 379 IDSRCGENFS--VYQD-----QKNKFIGQQFDACASWWT-QGPDATL------Q-----I 419
R EN+S +++ K + I ++ + ++ +T + L Q +
Sbjct: 1683 ---RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 420 ELA--RDM-------------G-----YTA-ARFGHVMFPENVYEPALECAELLLQ-G-- 455
E A D+ G Y A A VM E++ E++ G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL-------VEVVFYRGMT 1792
Query: 456 ----VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL---VDFLGKDTTEKC 504
V + R S+ G AI ++A SF E L V+ +GK T
Sbjct: 1793 MQVAVPRDELGR---SNYGMIAINPG-RVA---ASFSQEALQYVVERVGKRTGWLV 1841
Score = 32.3 bits (73), Expect = 0.83
Identities = 45/310 (14%), Positives = 85/310 (27%), Gaps = 116/310 (37%)
Query: 31 LDLPLSHPTFQ-IW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS 88
+DL + Q +W A+ T G S + I P
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTY---GFS-----------------ILDIVINNP--V 1670
Query: 89 DSRFLFTKLPSLSLRRNFPSSL---ILSNSILFSSLFAAKSFLSSRDLPF---------- 135
+ F +R N+ + + I+ + +F + S F
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSAT 1729
Query: 136 ---QPQKFNSEM---YDLNFREENRISGEEDS-----SVSE---LVCKT-LFAWEEAVS- 179
QP E DL + + I D+ S+ E L + + E V
Sbjct: 1730 QFTQPALTLMEKAAFEDL--KSKGLIP--ADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 180 -------PHLAAERESGGV-------VGDSKVIETLGK-CLRDGLESESESERGKMEILC 224
+A R+ G + +V + + L+ +E +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW------ 1839
Query: 225 IVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL------- 274
+VE + Q Y V +G + A +++
Sbjct: 1840 LVE----IVNYNVEN----QQ---Y---------V-------AAGDLRALDTVTNVLNFI 1872
Query: 275 KLRGYDVVAV 284
KL+ D++ +
Sbjct: 1873 KLQKIDIIEL 1882
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 58.4 bits (142), Expect = 5e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ G V F +L E +IFDEV T RL ++
Sbjct: 234 CAAILVEPM---LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSGGGAQEM 288
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG D+ GK + GG + A
Sbjct: 289 LGISADLTTLGKYIGGG-MSFGA 310
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 56.4 bits (137), Expect = 2e-08
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A I+EP+ G+++ F + ++ C+ + + DE+ TG R T +
Sbjct: 183 TAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGR-----TGKVFA 236
Query: 680 C-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
C PD+ GK L GGV P++ A + F
Sbjct: 237 CDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVF 273
Score = 33.7 bits (78), Expect = 0.25
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+ E + + + G+ A+E A+K A R++++D K
Sbjct: 78 DQLGPWYEKVAKLTN---KEMVLPMNTGAEAVETAIKTA-RRWAYDV-------KKVEAN 126
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGF 535
+ +++ + ++HG T+GA+ + GF
Sbjct: 127 RA---EIIVCEDNFHGRTMGAVSMSSNEEYKRGF 157
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 55.3 bits (134), Expect = 4e-08
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+ GG+ P F + L C + ++FDEV G R G
Sbjct: 197 VMDDHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---- 251
Query: 675 ADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
DL G PDI K L GG P++A L T + +F VG
Sbjct: 252 -DLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS 295
Score = 52.2 bits (126), Expect = 4e-07
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
H NV+ EPAL L + +A R F ++G+ A E A K+A R ++
Sbjct: 86 GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ + K K++A ++HG +L + Y+ GF
Sbjct: 139 CV---------RHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 55.3 bits (134), Expect = 5e-08
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A I+EP+ G+ + + + + C+ + + DEV TG R T LL
Sbjct: 215 AFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR-----TGKLLCVH 268
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L+GG P++A LA + +
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVI 303
Score = 35.3 bits (82), Expect = 0.069
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
+ P C L +G + + G+ A E A K+ RK+ ++
Sbjct: 102 RAFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLC-RKWGYEV-------K 150
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGF 535
K K++ K ++ G TLG + A + F
Sbjct: 151 KIPENMA---KIVVCKNNFSGRTLGCISASTTKKCTSNF 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 97/575 (16%), Positives = 163/575 (28%), Gaps = 171/575 (29%)
Query: 289 HGLVNEVPLMSY-LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERI 347
H + E Y ++ + V + FD V D K+I+ + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDN--------FDCKD-VQDMPKSILSKEEIDHI 54
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKN-KFIGQQFDACA 406
D LFW ++ EE V + F + N KF+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK----QEEMV--------QKFVEEVLRINYKFLMSPI---- 98
Query: 407 SWWTQGPDA-TLQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQ--------- 454
+ P T RD Y V NV +P L+ + LL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 455 ----GVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
G GK W A S ++ KM F+ F + L + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLN-------LKNCNSPETVLEML 202
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY-NSKWILSLPE-W 567
L Y D + S + R L P Y N +L L
Sbjct: 203 QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLVLLNVQ 254
Query: 568 LYSKIVEHKDITFC-----SRD-------------EIFYEERDSS----DLASIYSSYIS 605
+K +++ C +R I + + ++ S+ Y+
Sbjct: 255 -NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 606 --------QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
+ L NP ++S I I + + H+ I+ + N P
Sbjct: 313 CRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPA 369
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFVGDSK 716
+ ++ F RL V P IP L S
Sbjct: 370 EYRKM---FDRLSV---------FPP----------SAHIP-TILL------------SL 394
Query: 717 LWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYGSLYAASLLKKLREDGVYMRP 776
+W ++I+ V VV L+ SL++K ++ P
Sbjct: 395 IWF-DVIKS-----DVMVVVN-------------------KLHKYSLVEKQPKESTISIP 429
Query: 777 LGNVIYL-MCGPCSSPEVCSQLLLKLYQRLEEFDK 810
IYL + + + ++ Y + FD
Sbjct: 430 S---IYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Score = 52.9 bits (126), Expect = 4e-07
Identities = 80/583 (13%), Positives = 162/583 (27%), Gaps = 165/583 (28%)
Query: 141 NSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIET 200
+ E + ++ ++ +S ED+ V CK + ++ L+ E E ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 201 LGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCD---LYRPFRLPGILVG 257
L L S+ E +V+ L+ + L P +
Sbjct: 64 T-LRLFWTLLSKQEE---------MVQKFVE-------EVLRINYKFLMSPIKT------ 100
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
S Y + R Y+ V + + V+ + LR L +
Sbjct: 101 --EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQA--------LLELR 148
Query: 318 SNDL-----MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVP 372
+ ++ D + ++Q C M ++FW
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLS-------YKVQ--CKMD---FKIFW---------- 186
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
+ + C +V + + + Q D WT D + I+L R
Sbjct: 187 ---LNL--KNCNSPETVLEMLQK--LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 433 GHVMFPENVYEPALECAELLLQGVGKGWASRA--YF---------------SDNGSTAIE 475
+ YE L L+L V ++A F +D S A
Sbjct: 237 ---LLKSKPYENCL----LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTG 534
+ + + + + L K + +L L + + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 535 FLQQPWYSGRGL---------FLDPP---------TVFMYNSKWILSLPE------WLYS 570
+ + L L+P +VF ++ +P W
Sbjct: 347 WKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDV 399
Query: 571 KIVEHKDIT--FCSRDEIFYEERDSSDLA-SIYSSYISQNLLQNPGLKVSGCIGALIIEP 627
+ + + E+ + SI S Y+ ++ E
Sbjct: 400 IKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE-LKVKLEN------------EY 443
Query: 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+H + +VD I + IP D+ F + +G
Sbjct: 444 ALHRS----IVDHY--NIPKTFDSDDLIPPYLDQYF--YSHIG 478
Score = 42.9 bits (100), Expect = 5e-04
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 59/202 (29%)
Query: 2 LRLRRH--HYPDHHRRIL-----LRLFHHSTFHPQPLDLPL-SHPTFQIWSANTSLGKTL 53
L L+ + HR I+ + F P LD SH +G L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----------IGHHL 481
Query: 54 VSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113
+ L V+L D RFL K+ S N S++
Sbjct: 482 KNIEHPERMTLFRM-------VFL-----------DFRFLEQKIRHDSTAWNASGSIL-- 521
Query: 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA 173
N L K ++ D P + N+ + L EEN I + ++L+
Sbjct: 522 N--TLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKY----TDLL------ 568
Query: 174 WEEAVSPHLAAERESGGVVGDS 195
+A E + ++
Sbjct: 569 -------RIALMAEDEAIFEEA 583
Score = 30.6 bits (68), Expect = 2.6
Identities = 23/147 (15%), Positives = 35/147 (23%), Gaps = 52/147 (35%)
Query: 10 PDHHRRI----------LLRLFHHSTFHPQPLDLPLSHPTFQIWSANT----SLG-KTLV 54
DH I L RL + L L L + + +A +L K L+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKP-YENCL-LVLLN----VQNAKAWNAFNLSCKILL 270
Query: 55 SAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSN 114
T+ + +L T + T SL
Sbjct: 271 ------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------------ 306
Query: 115 SILFSSLFAAKSFLSSRDLPFQPQKFN 141
+DLP + N
Sbjct: 307 -------LLKYLDCRPQDLPREVLTTN 326
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 55.0 bits (133), Expect = 6e-08
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 224 VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 282
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI GK L+GG+ P++A L + + +
Sbjct: 283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
Score = 37.6 bits (88), Expect = 0.013
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
+ E E + + + + G A E A K+A RK+ +
Sbjct: 113 RAFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLA-RKWGYTV-------- 160
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGF 535
K + + K++ G++ G TL A+ + P+ Y GF
Sbjct: 161 KGIQKY--KAKIVFAAGNFWGRTLSAISSSTDPTSYDGF 197
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 52.9 bits (128), Expect = 2e-07
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
+IIE + GG++ F L + C+ + + +I DEV TG R G +
Sbjct: 175 GIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-----EFYAYQ 228
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PD+ K L GGV P+ A LA V SF G
Sbjct: 229 HFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGS 266
Score = 49.4 bits (119), Expect = 3e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y E A L++ + +F+++G+ ++E A+K+A RK+
Sbjct: 57 VEKLLHV---SNLYENPWQEELAHKLVKHFW--TEGKVFFANSGTESVEAAIKLA-RKYW 110
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
D GK+ + ++ + S+HG T G++ A + GF
Sbjct: 111 RDK-------GKNKWK------FISFENSFHGRTYGSLSATGQPKFHKGF 147
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 52.5 bits (127), Expect = 3e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y E A+ L R +F+++G+ +IE A+K A RK++F+ G
Sbjct: 73 NLYYNENIAAAAKNL---AKASALERVFFTNSGTESIEGAMKTA-RKYAFNK-------G 121
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +A K S+HG TLGA+ A Y F
Sbjct: 122 VKGGQ------FIAFKHSFHGRTLGALSLTANEKYQKPF 154
Score = 51.4 bits (124), Expect = 8e-07
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+I+E V GG++ + F + L K C + I +I DE+ G R +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-----SGKFFAYE 235
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+PDI K L G+ + A + V
Sbjct: 236 HAQILPDIMTSAKALGCGL-SVGAFVINQKV 265
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 52.2 bits (126), Expect = 4e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N++ P +E AELL + + +F++ G+ A E A+K+A RK+
Sbjct: 77 NLFWNRPQMELAELL---SKNTFGGKVFFANTGTEANEAAIKIA-RKYGKKK-------S 125
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +L+ S+HG TLG++ A Y F
Sbjct: 126 EKKYR------ILSAHNSFHGRTLGSLTATGQPKYQKPF 158
Score = 51.0 bits (123), Expect = 8e-07
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+ +EP+ G+ F K C ++FDEV G R G L
Sbjct: 186 AVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-----KLFAYQ 239
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G VPD+ K L GGV P+ A +
Sbjct: 240 KYGVVPDVLTTAKGLGGGV-PIGAVIVNERA 269
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 51.8 bits (125), Expect = 5e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + E L + +R + ++G+ A E ALK A R +
Sbjct: 74 AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
+ + A + G T+G++
Sbjct: 129 GRKKFV------------------AAMRGFSGRTMGSLSV 150
Score = 51.4 bits (124), Expect = 6e-07
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A+I+EPV GG+ P F R + Q + +I DE+ TG R G
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-----KRFAFE 241
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPDI K L GGV PL + V S
Sbjct: 242 HFGIVPDILTLAKALGGGV-PLGVAVMREEVARSM 275
>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH;
1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5
Length = 231
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 298 MSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRA 357
+ + ++PVL+ P S ++++ D++ L RA
Sbjct: 49 SNPVHRKIPVLLHAGRPVSESLVILQYLDDAF------PGTPHLLPPANSGDADAAYARA 102
Query: 358 GELFWWPFTQHKLVP 372
FW + KL
Sbjct: 103 TARFWADYVDRKLYD 117
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 564 LPEWLYSKIVEHKDITFCS---RDEIFYEERDSS 594
L EW + E + + D+ FY++ D+
Sbjct: 120 LEEW-NQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc
73102}
Length = 267
Score = 29.7 bits (66), Expect = 3.8
Identities = 22/179 (12%), Positives = 53/179 (29%), Gaps = 17/179 (9%)
Query: 297 LMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKR 356
+ + + + +V P + + H F ++ + ++ +
Sbjct: 66 IAAGVGDATGAIVGPTINVGMA--------LHHTAFPGTISLRPSTLIQVVRDYVTCLAK 117
Query: 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDAT 416
AG ++ H + + + E ++ +D + Q A+W+ G
Sbjct: 118 AGFSKFYFINGH----GGNIATLKAAFSETYAHLEDLQIANAQQVQCQVANWFMCGSVYK 173
Query: 417 LQIELARDM-----GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
L EL D + ++PE + + L + R + D
Sbjct: 174 LAKELYGDQEGSHATPSEVALTQYVYPEAIKQAPLSPEVASGHRIYSAADFRVRYPDGR 232
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional
regulation, redox poise; HET: ATP; 2.0A {Bacillus
subtilis} PDB: 2vt2_A*
Length = 215
Score = 29.5 bits (66), Expect = 4.0
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 24/125 (19%)
Query: 254 ILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPL 313
IL+G G LG Y K + + + VPV
Sbjct: 89 ILIGVGNLGT---AFLHYNFTKNNNTKISMAFDINESKIGTE------VGGVPV------ 133
Query: 314 PQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPE 373
+ +DL + + +L + Q + D G FT +L
Sbjct: 134 --YNLDDLEQHVKDESVA-------ILTVPAVAAQSITDRLVALGIKGILNFTPARLNVP 184
Query: 374 EAVTV 378
E + +
Sbjct: 185 EHIRI 189
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 29.7 bits (67), Expect = 4.9
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 44/161 (27%)
Query: 537 QQPWYSGRGLFLDPPTVFMYNSKWI-----LSLPEWLYSKIVEHKDIT---FC----SRD 584
+ ++ G + ++ +I + PEW ++ I F S D
Sbjct: 92 EAVYFGETGFSAERSKAGVFQYAYIHRSEVFTTPEWAKEAVIYQ--IFPERFANGDPSND 149
Query: 585 EIFYEERDSSDLASIYSSY------ISQNL--LQNPGLKVSGCIGALIIEPVVHAAGGMH 636
E+ S Y + L L+ G + AL P+ A+ H
Sbjct: 150 PPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELG------VTALYFTPIF-ASPSHH 202
Query: 637 --------MVDP------LFQRILVKECQNRKIPVIFDEVF 663
+DP F+R LV E R I +I D VF
Sbjct: 203 KYDTADYLAIDPQFGDLPTFRR-LVDEAHRRGIKIILDAVF 242
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 5.0
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 28/57 (49%)
Query: 212 ESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268
E ++ + K++ SL+ LY P + I T+
Sbjct: 18 EKQALK-KLQ-----------------ASLK--LYADDSAPAL--------AIKATM 46
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 560 WILS----LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
W+L+ P+ YS C I + E + +Y +
Sbjct: 155 WVLALLLAFPQGYYSTTETMPSRVVCM---IEWPEHPNKIYEKVYHICV 200
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 28.0 bits (63), Expect = 5.6
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 652 NRKIPVIF----DEVFTGFWRLGVET-----TADLLGCVPDIACYGKLLTGGVIPLAATL 702
RK P + D G LG+ + A L P+ A YG L +IP T+
Sbjct: 67 FRKTPRLMKLGEDITLWG-MELGLLSMRRGELARFL-FKPNYA-YGTLGCPPLIPPNTTV 123
Query: 703 ATNAVFD 709
+F+
Sbjct: 124 ----LFE 126
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 28.9 bits (64), Expect = 6.5
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 207 DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRP---FRLPGILVGDGRLGG 263
+ ES E+ G + + + G G +Y P I + G G
Sbjct: 54 NPTESMLEARSGPFSV-----SEERASRFGADGFGGGTIYYPRENNTYGAIAISPG-YTG 107
Query: 264 ISGTISAY-ESLKLRGYDVVAVVFEDHG 290
+I+ E + G+ V+A+
Sbjct: 108 TQSSIAWLGERIASHGFVVIAIDTNTTL 135
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 28.3 bits (63), Expect = 8.8
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 653 RKIPVIFD----EVFTGFWRLGVET-----TADLLGCVPDIACYGKLLTGGVIPLAATLA 703
RK FD EV W + + T + C P+ A YG + IP ATL
Sbjct: 93 RKDKFSFDLGKGEVIKA-WDIAIATMKVGEVCHIT-CKPEYA-YGSAGSPPKIPPNATL- 148
Query: 704 TNAVFD 709
VF+
Sbjct: 149 ---VFE 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.420
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,832,704
Number of extensions: 797999
Number of successful extensions: 2070
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1949
Number of HSP's successfully gapped: 117
Length of query: 818
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 717
Effective length of database: 3,881,772
Effective search space: 2783230524
Effective search space used: 2783230524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)