Query 003467
Match_columns 817
No_of_seqs 805 out of 3563
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 23:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2048 WD40 repeat protein [G 100.0 4.3E-89 9.4E-94 674.0 67.1 672 1-817 13-691 (691)
2 KOG0318 WD40 repeat stress pro 100.0 1.1E-54 2.5E-59 416.7 54.9 503 6-667 52-602 (603)
3 KOG0319 WD40-repeat-containing 100.0 8.6E-54 1.9E-58 427.6 45.3 529 12-702 61-601 (775)
4 KOG0271 Notchless-like WD40 re 100.0 2.1E-53 4.6E-58 391.7 27.9 371 48-665 104-479 (480)
5 KOG0271 Notchless-like WD40 re 100.0 9.8E-52 2.1E-56 380.7 28.7 297 3-417 104-440 (480)
6 KOG0318 WD40 repeat stress pro 100.0 1.1E-47 2.3E-52 368.9 55.7 524 18-701 23-584 (603)
7 KOG0291 WD40-repeat-containing 100.0 6E-48 1.3E-52 386.0 52.8 465 2-669 89-614 (893)
8 KOG0319 WD40-repeat-containing 100.0 1.4E-49 3.1E-54 397.5 41.1 505 12-668 104-620 (775)
9 KOG0306 WD40-repeat-containing 100.0 1.1E-46 2.3E-51 376.9 46.1 467 13-669 65-666 (888)
10 KOG0306 WD40-repeat-containing 100.0 3.3E-46 7.1E-51 373.4 46.5 531 23-712 32-653 (888)
11 KOG0291 WD40-repeat-containing 100.0 2.4E-44 5.1E-49 360.3 59.1 559 11-722 12-613 (893)
12 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-45 6E-50 343.2 24.0 283 11-414 173-458 (459)
13 KOG1408 WD40 repeat protein [F 100.0 2.4E-42 5.3E-47 343.0 40.8 518 8-669 73-715 (1080)
14 KOG0276 Vesicle coat complex C 100.0 1.7E-40 3.6E-45 325.6 46.1 481 6-667 6-490 (794)
15 KOG0272 U4/U6 small nuclear ri 100.0 4.8E-43 1E-47 328.2 23.9 282 60-621 175-458 (459)
16 KOG0286 G-protein beta subunit 100.0 4E-41 8.7E-46 300.2 31.6 286 6-414 48-343 (343)
17 KOG0286 G-protein beta subunit 100.0 2.3E-39 5E-44 289.0 32.5 290 100-621 47-343 (343)
18 KOG1063 RNA polymerase II elon 100.0 1.5E-37 3.3E-42 309.0 45.1 610 6-701 47-734 (764)
19 KOG1539 WD repeat protein [Gen 100.0 1.8E-36 3.8E-41 307.8 50.9 531 10-703 73-630 (910)
20 KOG2106 Uncharacterized conser 100.0 1E-36 2.3E-41 291.7 44.7 508 4-666 95-625 (626)
21 KOG1539 WD repeat protein [Gen 100.0 7.8E-37 1.7E-41 310.3 45.9 529 6-666 107-647 (910)
22 KOG0273 Beta-transducin family 100.0 6.7E-38 1.5E-42 297.7 32.4 333 59-623 177-523 (524)
23 KOG1408 WD40 repeat protein [F 100.0 4E-37 8.7E-42 306.1 39.3 550 17-721 41-713 (1080)
24 KOG0645 WD40 repeat protein [G 100.0 1.7E-37 3.6E-42 274.2 32.1 298 5-416 6-311 (312)
25 KOG0276 Vesicle coat complex C 100.0 1.1E-36 2.3E-41 299.0 41.2 468 60-722 13-491 (794)
26 KOG0279 G protein beta subunit 100.0 2.5E-37 5.5E-42 274.3 31.1 290 8-416 10-313 (315)
27 KOG0315 G-protein beta subunit 100.0 4.1E-37 8.8E-42 268.0 31.3 295 216-645 11-309 (311)
28 KOG0279 G protein beta subunit 100.0 6.8E-37 1.5E-41 271.6 32.0 296 99-570 6-313 (315)
29 KOG0292 Vesicle coat complex C 100.0 1.3E-35 2.8E-40 302.6 45.3 486 9-668 5-519 (1202)
30 KOG0296 Angio-associated migra 100.0 1.4E-36 3E-41 279.7 32.9 341 6-623 57-398 (399)
31 KOG0285 Pleiotropic regulator 100.0 6E-37 1.3E-41 280.7 26.9 293 6-419 144-442 (460)
32 KOG0315 G-protein beta subunit 100.0 2.4E-36 5.1E-41 263.3 28.9 296 79-601 11-308 (311)
33 KOG0295 WD40 repeat-containing 100.0 1.9E-37 4.1E-42 285.2 23.3 285 9-415 104-405 (406)
34 KOG0263 Transcription initiati 100.0 5.8E-37 1.3E-41 311.2 27.0 252 8-327 371-652 (707)
35 KOG0273 Beta-transducin family 100.0 4.4E-36 9.4E-41 285.4 28.8 278 14-416 236-523 (524)
36 KOG0285 Pleiotropic regulator 100.0 4.2E-36 9.1E-41 275.2 26.1 298 48-465 140-441 (460)
37 KOG1063 RNA polymerase II elon 100.0 1.3E-33 2.7E-38 281.3 45.4 603 25-721 25-699 (764)
38 KOG0265 U5 snRNP-specific prot 100.0 3.4E-35 7.4E-40 263.6 28.7 284 9-413 43-335 (338)
39 KOG2048 WD40 repeat protein [G 100.0 3.9E-32 8.5E-37 270.5 51.8 503 60-720 25-547 (691)
40 KOG0296 Angio-associated migra 100.0 4.3E-34 9.3E-39 263.4 34.1 332 197-667 58-398 (399)
41 KOG0295 WD40 repeat-containing 100.0 1.7E-35 3.6E-40 272.4 24.4 305 99-622 99-405 (406)
42 KOG0284 Polyadenylation factor 100.0 8.7E-37 1.9E-41 284.8 15.3 284 13-417 96-381 (464)
43 KOG0292 Vesicle coat complex C 100.0 1.2E-32 2.6E-37 281.0 43.1 436 60-722 9-480 (1202)
44 KOG0281 Beta-TrCP (transducin 100.0 5E-36 1.1E-40 273.4 15.7 285 12-419 196-480 (499)
45 KOG0265 U5 snRNP-specific prot 100.0 8.2E-34 1.8E-38 254.7 26.6 296 100-621 39-336 (338)
46 KOG0293 WD40 repeat-containing 100.0 1.4E-34 3E-39 270.2 22.5 291 7-417 218-514 (519)
47 KOG0266 WD40 repeat-containing 100.0 9.7E-34 2.1E-38 299.5 31.6 287 10-416 156-454 (456)
48 KOG0645 WD40 repeat protein [G 100.0 1E-32 2.2E-37 244.0 32.3 298 99-570 5-311 (312)
49 KOG0275 Conserved WD40 repeat- 100.0 3.7E-35 8.1E-40 265.2 17.1 287 11-414 211-507 (508)
50 KOG0316 Conserved WD40 repeat- 100.0 1.4E-33 3.1E-38 243.8 25.3 268 4-362 8-279 (307)
51 KOG0284 Polyadenylation factor 100.0 4.7E-35 1E-39 273.3 17.2 283 60-521 96-381 (464)
52 cd00200 WD40 WD40 domain, foun 100.0 9.5E-33 2.1E-37 281.2 35.4 286 7-414 3-289 (289)
53 KOG2106 Uncharacterized conser 100.0 1.1E-30 2.5E-35 250.5 46.2 513 20-711 72-615 (626)
54 KOG0293 WD40 repeat-containing 100.0 3.4E-33 7.3E-38 261.0 23.4 295 101-668 217-514 (519)
55 KOG0282 mRNA splicing factor [ 100.0 4.9E-34 1.1E-38 272.8 18.2 290 6-414 207-503 (503)
56 KOG0263 Transcription initiati 100.0 3E-33 6.5E-38 284.3 23.2 249 51-417 370-650 (707)
57 KOG0316 Conserved WD40 repeat- 100.0 8.6E-32 1.9E-36 232.9 26.8 287 197-666 11-298 (307)
58 PLN00181 protein SPA1-RELATED; 100.0 1.6E-31 3.5E-36 305.6 37.9 299 10-415 480-792 (793)
59 KOG0278 Serine/threonine kinas 100.0 3.8E-33 8.2E-38 243.3 18.2 286 10-419 11-300 (334)
60 KOG0282 mRNA splicing factor [ 100.0 3E-33 6.5E-38 267.4 18.9 289 196-621 207-503 (503)
61 KOG0266 WD40 repeat-containing 100.0 2.1E-31 4.6E-36 281.7 32.6 259 47-419 146-412 (456)
62 cd00200 WD40 WD40 domain, foun 100.0 2.3E-30 5E-35 263.5 35.7 286 197-665 3-289 (289)
63 KOG0281 Beta-TrCP (transducin 100.0 1E-32 2.3E-37 251.8 14.4 282 60-466 197-480 (499)
64 KOG0278 Serine/threonine kinas 100.0 7.6E-32 1.6E-36 235.2 17.7 288 197-626 8-300 (334)
65 KOG0313 Microtubule binding pr 100.0 8.7E-31 1.9E-35 242.8 25.6 286 11-417 103-419 (423)
66 PLN00181 protein SPA1-RELATED; 100.0 1.1E-29 2.3E-34 290.8 38.8 305 179-666 457-792 (793)
67 KOG0643 Translation initiation 100.0 3.5E-30 7.6E-35 227.3 25.2 301 8-416 5-317 (327)
68 KOG0640 mRNA cleavage stimulat 100.0 2E-30 4.3E-35 233.5 21.0 301 4-416 103-426 (430)
69 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-28 6.7E-33 221.7 35.4 296 197-672 8-308 (311)
70 KOG0643 Translation initiation 100.0 5.5E-29 1.2E-33 219.8 28.5 286 103-571 5-318 (327)
71 KOG0274 Cdc4 and related F-box 100.0 2.2E-29 4.7E-34 263.8 28.8 280 11-422 206-488 (537)
72 KOG1445 Tumor-specific antigen 100.0 1.4E-28 3.1E-33 242.2 31.2 213 5-282 71-293 (1012)
73 KOG1407 WD40 repeat protein [F 100.0 9.8E-29 2.1E-33 217.6 26.5 278 197-659 14-294 (313)
74 KOG0275 Conserved WD40 repeat- 100.0 6.1E-30 1.3E-34 231.6 17.4 294 201-665 211-507 (508)
75 KOG0283 WD40 repeat-containing 100.0 3.3E-29 7E-34 257.5 25.1 263 3-327 256-579 (712)
76 KOG0308 Conserved WD40 repeat- 100.0 1.3E-29 2.9E-34 250.9 21.0 252 11-327 19-288 (735)
77 KOG0641 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 203.8 31.9 302 12-416 31-349 (350)
78 KOG0294 WD40 repeat-containing 100.0 2.5E-28 5.4E-33 221.1 24.7 244 9-327 39-284 (362)
79 PTZ00421 coronin; Provisional 100.0 1.3E-27 2.7E-32 250.9 33.1 278 1-362 1-312 (493)
80 KOG0301 Phospholipase A2-activ 100.0 2.3E-28 4.9E-33 244.2 25.6 282 6-417 7-289 (745)
81 KOG1538 Uncharacterized conser 100.0 9.7E-28 2.1E-32 237.7 28.2 491 3-661 4-518 (1081)
82 KOG0313 Microtubule binding pr 100.0 1.1E-27 2.3E-32 222.4 25.4 256 60-418 105-378 (423)
83 KOG0305 Anaphase promoting com 100.0 1.2E-27 2.7E-32 239.9 27.8 274 19-418 183-463 (484)
84 KOG0973 Histone transcription 100.0 1.2E-27 2.6E-32 252.5 28.9 307 251-672 11-360 (942)
85 KOG0289 mRNA splicing factor [ 100.0 1.5E-27 3.2E-32 225.1 26.3 284 14-415 220-505 (506)
86 KOG0274 Cdc4 and related F-box 100.0 2.7E-27 5.9E-32 248.1 31.1 242 53-419 201-444 (537)
87 KOG0277 Peroxisomal targeting 100.0 8.7E-28 1.9E-32 210.8 22.2 283 17-415 12-308 (311)
88 KOG0310 Conserved WD40 repeat- 100.0 5E-28 1.1E-32 232.3 22.4 280 13-416 26-309 (487)
89 KOG0308 Conserved WD40 repeat- 100.0 1.8E-28 3.8E-33 243.0 19.9 237 81-418 40-287 (735)
90 KOG0973 Histone transcription 100.0 1.9E-27 4.1E-32 251.0 28.2 306 1-417 1-356 (942)
91 KOG0288 WD40 repeat protein Ti 100.0 1.6E-28 3.5E-33 230.2 17.6 206 51-327 167-374 (459)
92 KOG0772 Uncharacterized conser 100.0 1.5E-27 3.2E-32 229.9 23.6 277 9-362 163-466 (641)
93 KOG1407 WD40 repeat protein [F 100.0 6E-27 1.3E-31 206.4 24.3 267 7-362 14-281 (313)
94 KOG1446 Histone H3 (Lys4) meth 100.0 1E-25 2.2E-30 205.3 33.2 268 7-362 8-284 (311)
95 KOG0305 Anaphase promoting com 100.0 1.8E-27 3.9E-32 238.8 23.4 243 10-326 214-463 (484)
96 KOG0268 Sof1-like rRNA process 100.0 4E-28 8.6E-33 223.7 16.2 282 9-421 62-350 (433)
97 KOG0288 WD40 repeat protein Ti 100.0 4.8E-28 1E-32 227.1 16.4 281 9-413 171-458 (459)
98 KOG0299 U3 snoRNP-associated p 100.0 1.4E-26 2.9E-31 220.7 26.0 274 6-362 135-434 (479)
99 KOG1445 Tumor-specific antigen 100.0 2.3E-25 5E-30 219.7 34.6 526 52-671 72-754 (1012)
100 KOG0310 Conserved WD40 repeat- 100.0 7.6E-27 1.7E-31 224.3 23.6 285 202-626 25-312 (487)
101 KOG0277 Peroxisomal targeting 100.0 4.7E-27 1E-31 206.2 19.7 247 7-323 55-308 (311)
102 PTZ00420 coronin; Provisional 100.0 9.8E-26 2.1E-30 237.1 33.5 251 24-362 37-315 (568)
103 KOG0300 WD40 repeat-containing 100.0 1.3E-26 2.7E-31 209.6 22.7 295 6-417 141-477 (481)
104 PTZ00421 coronin; Provisional 100.0 3.1E-26 6.7E-31 240.4 29.4 232 8-305 70-314 (493)
105 KOG0299 U3 snoRNP-associated p 100.0 5.8E-26 1.3E-30 216.4 25.7 286 197-611 136-443 (479)
106 KOG0301 Phospholipase A2-activ 99.9 4.7E-26 1E-30 227.8 26.1 283 49-521 4-289 (745)
107 KOG0300 WD40 repeat-containing 99.9 2.9E-26 6.2E-31 207.4 22.1 316 79-571 125-477 (481)
108 KOG1332 Vesicle coat complex C 99.9 1.6E-26 3.4E-31 201.8 19.6 259 6-326 4-288 (299)
109 KOG0289 mRNA splicing factor [ 99.9 2.1E-25 4.5E-30 210.7 28.2 203 60-327 219-422 (506)
110 KOG1274 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 209.3 50.5 261 1-326 1-264 (933)
111 KOG2096 WD40 repeat protein [G 99.9 3.3E-25 7.1E-30 200.9 26.6 304 250-665 83-400 (420)
112 KOG0647 mRNA export protein (c 99.9 1.9E-25 4.2E-30 201.2 24.7 263 12-362 26-302 (347)
113 KOG0294 WD40 repeat-containing 99.9 2.3E-25 5E-30 202.0 24.4 273 28-420 4-285 (362)
114 KOG0647 mRNA export protein (c 99.9 4.5E-25 9.7E-30 198.9 24.9 279 201-612 25-312 (347)
115 KOG0772 Uncharacterized conser 99.9 3.1E-25 6.8E-30 213.9 25.5 301 197-622 161-486 (641)
116 KOG1963 WD40 repeat protein [G 99.9 3E-23 6.4E-28 214.5 41.7 527 17-674 20-589 (792)
117 KOG0639 Transducin-like enhanc 99.9 4.9E-26 1.1E-30 218.5 19.4 284 10-415 416-703 (705)
118 KOG0283 WD40 repeat-containing 99.9 9.9E-26 2.2E-30 232.0 22.9 298 51-419 258-579 (712)
119 PTZ00420 coronin; Provisional 99.9 1.5E-24 3.3E-29 228.1 32.2 186 83-326 49-250 (568)
120 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.7E-29 197.1 26.9 277 202-613 12-294 (323)
121 KOG0641 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 181.0 30.9 253 49-417 23-304 (350)
122 KOG0268 Sof1-like rRNA process 99.9 2.8E-26 6.1E-31 211.5 15.2 295 196-677 59-356 (433)
123 KOG0640 mRNA cleavage stimulat 99.9 5.6E-25 1.2E-29 198.6 22.3 298 102-622 106-425 (430)
124 KOG0264 Nucleosome remodeling 99.9 3.6E-25 7.7E-30 211.4 21.8 253 10-326 121-406 (422)
125 KOG2096 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 195.7 24.5 309 102-519 80-401 (420)
126 KOG1332 Vesicle coat complex C 99.9 5.3E-25 1.1E-29 192.3 17.2 241 171-521 24-287 (299)
127 KOG1036 Mitotic spindle checkp 99.9 2.2E-23 4.7E-28 189.1 26.5 260 10-362 10-283 (323)
128 KOG0639 Transducin-like enhanc 99.9 2.2E-24 4.7E-29 207.3 20.5 280 201-622 417-703 (705)
129 KOG4283 Transcription-coupled 99.9 4.5E-23 9.7E-28 185.1 26.4 304 5-416 35-365 (397)
130 KOG0646 WD40 repeat protein [G 99.9 1.7E-23 3.8E-28 200.1 25.2 281 35-422 18-313 (476)
131 KOG2055 WD40 repeat protein [G 99.9 2.3E-23 5E-28 198.7 25.9 200 60-325 213-418 (514)
132 KOG2445 Nuclear pore complex c 99.9 7.2E-23 1.6E-27 185.2 26.2 261 5-326 5-320 (361)
133 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3E-28 200.8 22.4 300 179-604 17-330 (476)
134 KOG4283 Transcription-coupled 99.9 1.1E-22 2.3E-27 182.7 26.3 313 198-622 38-364 (397)
135 KOG0267 Microtubule severing p 99.9 2.5E-25 5.4E-30 223.5 9.7 237 7-315 22-259 (825)
136 KOG1963 WD40 repeat protein [G 99.9 3.2E-21 7E-26 199.6 39.8 482 61-669 17-540 (792)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.8E-22 1.9E-26 201.6 35.4 292 171-646 2-300 (300)
138 KOG1274 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 210.3 28.2 287 200-664 10-297 (933)
139 KOG0264 Nucleosome remodeling 99.9 3.7E-23 7.9E-28 197.8 22.5 264 57-417 121-405 (422)
140 KOG1273 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 188.2 20.4 286 16-327 26-325 (405)
141 KOG2055 WD40 repeat protein [G 99.9 1.4E-22 2.9E-27 193.5 25.1 288 13-416 213-512 (514)
142 KOG0650 WD40 repeat nucleolar 99.9 9.5E-23 2.1E-27 200.5 23.6 292 8-413 395-732 (733)
143 KOG0267 Microtubule severing p 99.9 2.5E-24 5.5E-29 216.3 10.3 243 25-362 4-247 (825)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-21 5.3E-26 198.3 32.6 271 25-422 1-285 (300)
145 KOG0650 WD40 repeat nucleolar 99.9 4.3E-22 9.2E-27 196.0 25.3 317 197-664 394-732 (733)
146 KOG0269 WD40 repeat-containing 99.9 1.8E-23 3.9E-28 212.0 15.6 245 17-326 91-342 (839)
147 KOG4328 WD40 protein [Function 99.9 8.4E-22 1.8E-26 188.0 24.1 262 1-327 174-453 (498)
148 KOG0321 WD40 repeat-containing 99.9 6.1E-22 1.3E-26 196.6 23.1 297 19-418 55-393 (720)
149 KOG0269 WD40 repeat-containing 99.9 2E-22 4.2E-27 204.6 18.9 290 14-417 40-341 (839)
150 KOG1538 Uncharacterized conser 99.9 7.4E-20 1.6E-24 182.3 34.9 479 62-720 14-522 (1081)
151 KOG1273 WD40 repeat protein [G 99.9 5.4E-21 1.2E-25 173.5 23.6 270 171-521 36-323 (405)
152 KOG1034 Transcriptional repres 99.9 8.4E-22 1.8E-26 180.0 18.4 341 7-463 32-381 (385)
153 KOG2445 Nuclear pore complex c 99.9 2E-20 4.3E-25 169.6 26.9 275 53-416 6-318 (361)
154 KOG0302 Ribosome Assembly prot 99.9 3.9E-21 8.5E-26 178.8 22.6 216 52-327 144-381 (440)
155 KOG1009 Chromatin assembly com 99.9 3.3E-20 7.3E-25 174.6 27.6 327 172-627 28-376 (434)
156 COG2319 FOG: WD40 repeat [Gene 99.9 2.9E-18 6.4E-23 186.5 46.9 250 8-327 60-317 (466)
157 KOG1034 Transcriptional repres 99.9 2.4E-20 5.2E-25 170.5 23.4 301 172-622 57-382 (385)
158 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-20 3.3E-25 180.8 21.7 289 177-649 9-305 (673)
159 KOG0270 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 179.7 19.7 239 24-327 191-452 (463)
160 KOG0321 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 186.6 21.5 307 266-669 66-393 (720)
161 KOG4328 WD40 protein [Function 99.9 7.1E-20 1.5E-24 175.0 24.5 299 197-668 180-496 (498)
162 KOG0307 Vesicle coat complex C 99.9 3.1E-21 6.7E-26 205.4 16.8 292 17-419 10-330 (1049)
163 KOG1009 Chromatin assembly com 99.9 1.4E-19 3E-24 170.5 25.0 163 204-416 14-195 (434)
164 COG2319 FOG: WD40 repeat [Gene 99.9 2E-17 4.4E-22 179.9 46.4 369 59-668 64-443 (466)
165 KOG0302 Ribosome Assembly prot 99.9 5.7E-20 1.2E-24 171.2 21.1 247 11-322 149-436 (440)
166 KOG4497 Uncharacterized conser 99.9 1.2E-19 2.5E-24 165.9 21.5 353 208-718 13-428 (447)
167 KOG0322 G-protein beta subunit 99.9 1.6E-20 3.4E-25 166.4 15.2 290 10-323 11-322 (323)
168 KOG0270 WD40 repeat-containing 99.9 2.2E-19 4.8E-24 171.1 23.6 247 18-327 130-407 (463)
169 KOG4378 Nuclear protein COP1 [ 99.8 3.3E-20 7.2E-25 178.5 18.1 261 15-362 36-302 (673)
170 KOG2919 Guanine nucleotide-bin 99.8 8E-19 1.7E-23 160.2 23.8 291 61-456 50-361 (406)
171 KOG2919 Guanine nucleotide-bin 99.8 4E-19 8.8E-24 162.1 21.8 273 16-363 52-350 (406)
172 KOG1523 Actin-related protein 99.8 8.4E-19 1.8E-23 160.2 19.9 217 492-724 11-239 (361)
173 KOG1524 WD40 repeat-containing 99.8 1.9E-17 4.1E-22 161.4 29.2 488 11-670 12-526 (737)
174 KOG4497 Uncharacterized conser 99.8 9.5E-19 2.1E-23 160.0 19.1 398 66-659 14-424 (447)
175 KOG1007 WD repeat protein TSSC 99.8 1.4E-18 3.1E-23 156.1 19.6 251 8-324 58-361 (370)
176 KOG1523 Actin-related protein 99.8 1.4E-17 3E-22 152.3 23.7 247 1-317 1-271 (361)
177 KOG0303 Actin-binding protein 99.8 3.1E-18 6.7E-23 160.6 18.9 232 7-305 75-320 (472)
178 KOG0303 Actin-binding protein 99.8 7.9E-18 1.7E-22 158.0 21.3 206 54-327 76-297 (472)
179 KOG0642 Cell-cycle nuclear pro 99.8 8.9E-19 1.9E-23 172.2 15.2 257 9-327 290-564 (577)
180 KOG4227 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 155.9 22.0 316 9-416 52-387 (609)
181 KOG1524 WD40 repeat-containing 99.8 3E-17 6.6E-22 159.9 24.4 213 26-326 76-288 (737)
182 KOG0322 G-protein beta subunit 99.8 2.7E-18 5.8E-23 152.4 15.6 310 197-622 8-322 (323)
183 KOG1310 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 160.7 23.8 126 195-327 42-181 (758)
184 KOG0307 Vesicle coat complex C 99.8 6.4E-19 1.4E-23 188.0 13.3 248 14-327 65-330 (1049)
185 KOG0649 WD40 repeat protein [G 99.8 3E-16 6.5E-21 137.7 27.4 244 15-326 12-276 (325)
186 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 154.0 19.5 280 26-415 41-345 (376)
187 KOG1007 WD repeat protein TSSC 99.8 4.1E-17 8.8E-22 146.8 20.4 232 86-418 38-291 (370)
188 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-18 8.2E-23 167.9 15.0 257 48-418 283-563 (577)
189 KOG0644 Uncharacterized conser 99.8 1.3E-18 2.8E-23 178.2 11.0 240 8-327 185-429 (1113)
190 KOG2110 Uncharacterized conser 99.8 1.6E-15 3.4E-20 141.9 30.3 241 11-327 3-251 (391)
191 PRK11028 6-phosphogluconolacto 99.8 3.9E-15 8.4E-20 153.3 35.8 145 172-325 4-157 (330)
192 KOG2041 WD40 repeat protein [G 99.8 9.9E-15 2.2E-19 147.4 35.6 556 1-725 1-623 (1189)
193 KOG0290 Conserved WD40 repeat- 99.7 7.2E-16 1.6E-20 139.0 24.1 264 5-327 35-321 (364)
194 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 4E-21 146.4 19.6 286 79-462 41-345 (376)
195 KOG1334 WD40 repeat protein [G 99.7 2.5E-17 5.4E-22 159.0 14.6 315 196-626 135-469 (559)
196 KOG1587 Cytoplasmic dynein int 99.7 2.7E-16 5.9E-21 163.9 23.4 254 12-326 241-518 (555)
197 PRK11028 6-phosphogluconolacto 99.7 3.7E-15 8.1E-20 153.4 31.4 249 13-325 34-305 (330)
198 KOG0644 Uncharacterized conser 99.7 1.3E-17 2.8E-22 171.0 12.7 279 251-669 188-470 (1113)
199 KOG0649 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 136.1 20.9 233 62-417 12-275 (325)
200 KOG1310 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 153.8 21.2 243 9-328 46-307 (758)
201 KOG0290 Conserved WD40 repeat- 99.7 2.3E-16 5.1E-21 142.1 18.6 245 10-320 93-361 (364)
202 KOG1517 Guanine nucleotide bin 99.7 1.2E-15 2.6E-20 160.9 24.9 309 7-417 1058-1382(1387)
203 KOG1517 Guanine nucleotide bin 99.7 1.5E-15 3.3E-20 160.1 24.2 305 205-671 1066-1385(1387)
204 KOG1334 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 154.3 14.6 302 8-418 137-468 (559)
205 KOG1912 WD40 repeat protein [G 99.7 7E-14 1.5E-18 142.9 34.6 552 3-671 45-703 (1062)
206 KOG0771 Prolactin regulatory e 99.7 3.5E-15 7.5E-20 142.4 23.7 202 298-624 148-355 (398)
207 KOG0771 Prolactin regulatory e 99.7 2.4E-16 5.2E-21 150.3 15.3 201 17-282 148-354 (398)
208 PRK01742 tolB translocation pr 99.7 4.1E-15 8.9E-20 157.6 24.3 232 34-362 183-424 (429)
209 PRK01742 tolB translocation pr 99.7 1.1E-15 2.4E-20 161.9 19.9 221 6-305 196-426 (429)
210 PF02239 Cytochrom_D1: Cytochr 99.7 2.6E-14 5.7E-19 145.7 27.7 324 267-671 9-351 (369)
211 KOG1587 Cytoplasmic dynein int 99.7 1.2E-14 2.7E-19 151.7 25.0 275 88-521 222-517 (555)
212 KOG2110 Uncharacterized conser 99.7 1.5E-13 3.2E-18 128.9 29.2 179 171-416 18-204 (391)
213 KOG0974 WD-repeat protein WDR6 99.7 3.9E-13 8.4E-18 142.9 35.8 190 79-327 100-291 (967)
214 KOG2111 Uncharacterized conser 99.7 1.5E-13 3.1E-18 126.3 27.5 179 408-624 75-257 (346)
215 PF02239 Cytochrom_D1: Cytochr 99.7 3.8E-13 8.2E-18 137.2 33.5 331 172-632 8-356 (369)
216 KOG1912 WD40 repeat protein [G 99.7 1.4E-13 3E-18 140.8 29.2 465 62-671 17-555 (1062)
217 KOG4227 WD40 repeat protein [G 99.7 1.3E-14 2.7E-19 136.2 19.6 310 196-569 49-386 (609)
218 KOG1240 Protein kinase contain 99.7 5.5E-14 1.2E-18 151.1 26.9 259 6-327 1041-1337(1431)
219 KOG2139 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 127.5 25.4 198 60-325 98-310 (445)
220 KOG2111 Uncharacterized conser 99.6 1.4E-12 3E-17 120.0 30.3 238 15-327 7-259 (346)
221 KOG2139 WD40 repeat protein [G 99.6 4E-13 8.8E-18 125.4 25.2 305 204-668 99-432 (445)
222 PRK03629 tolB translocation pr 99.6 7.1E-14 1.5E-18 147.7 23.2 222 5-304 190-427 (429)
223 KOG2321 WD40 repeat protein [G 99.6 9.6E-14 2.1E-18 137.2 21.8 251 11-326 49-345 (703)
224 KOG1240 Protein kinase contain 99.6 2.8E-13 6.1E-18 145.8 26.8 175 171-362 1062-1247(1431)
225 KOG2315 Predicted translation 99.6 1.7E-12 3.7E-17 128.7 30.3 335 172-646 47-410 (566)
226 PF04762 IKI3: IKI3 family; I 99.6 2.6E-10 5.7E-15 129.4 50.6 522 13-721 75-639 (928)
227 PRK03629 tolB translocation pr 99.6 1E-12 2.3E-17 138.8 27.4 231 36-362 180-426 (429)
228 KOG2041 WD40 repeat protein [G 99.6 1.1E-11 2.4E-16 125.8 32.6 497 8-669 66-621 (1189)
229 KOG0974 WD-repeat protein WDR6 99.6 3.5E-11 7.6E-16 128.3 37.8 202 13-283 87-289 (967)
230 KOG2394 WD40 protein DMR-N9 [G 99.6 2.6E-13 5.7E-18 133.2 19.1 223 15-304 125-384 (636)
231 KOG2315 Predicted translation 99.6 2E-11 4.4E-16 121.2 32.3 351 181-671 12-394 (566)
232 KOG1272 WD40-repeat-containing 99.6 2.6E-14 5.5E-19 137.6 11.4 230 16-324 132-362 (545)
233 PF10282 Lactonase: Lactonase, 99.5 5.3E-11 1.2E-15 122.3 36.7 300 274-644 13-345 (345)
234 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.4E-19 139.0 9.4 221 170-463 141-362 (545)
235 PRK04922 tolB translocation pr 99.5 3.9E-13 8.5E-18 142.9 21.0 221 6-304 196-432 (433)
236 COG4946 Uncharacterized protei 99.5 1.3E-10 2.8E-15 112.8 35.6 166 502-703 331-501 (668)
237 KOG1354 Serine/threonine prote 99.5 2.7E-12 5.8E-17 119.2 22.4 316 294-670 25-362 (433)
238 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.4E-17 121.2 20.1 153 495-671 9-183 (194)
239 PRK04922 tolB translocation pr 99.5 2.5E-12 5.4E-17 136.8 25.5 214 35-325 184-412 (433)
240 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-13 4.6E-18 133.8 15.7 174 22-262 182-383 (636)
241 PRK05137 tolB translocation pr 99.5 3.3E-12 7.2E-17 136.1 26.4 216 35-327 182-415 (435)
242 PRK02889 tolB translocation pr 99.5 7.2E-13 1.6E-17 140.3 21.0 222 7-305 189-425 (427)
243 PRK02889 tolB translocation pr 99.5 2.8E-12 6E-17 135.8 24.8 205 35-316 176-392 (427)
244 PRK05137 tolB translocation pr 99.5 1.9E-12 4E-17 138.1 23.0 221 5-304 193-432 (435)
245 COG4946 Uncharacterized protei 99.5 2.8E-09 6.1E-14 103.7 41.3 121 488-628 356-482 (668)
246 KOG1409 Uncharacterized conser 99.5 1.3E-12 2.8E-17 121.3 15.8 253 51-419 16-273 (404)
247 KOG2321 WD40 repeat protein [G 99.5 2.2E-11 4.8E-16 120.8 24.7 200 502-722 145-344 (703)
248 PF04762 IKI3: IKI3 family; I 99.5 6.6E-08 1.4E-12 110.2 55.3 408 171-670 88-567 (928)
249 KOG3881 Uncharacterized conser 99.5 7.9E-12 1.7E-16 118.4 19.4 256 60-421 55-325 (412)
250 KOG1354 Serine/threonine prote 99.5 1E-11 2.3E-16 115.3 19.7 249 13-327 25-304 (433)
251 PF08662 eIF2A: Eukaryotic tra 99.4 8.8E-12 1.9E-16 115.2 19.0 158 17-242 9-187 (194)
252 COG5354 Uncharacterized protei 99.4 2E-10 4.4E-15 112.7 28.8 319 252-671 31-399 (561)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.1E-09 4.6E-14 106.8 36.0 267 225-631 27-338 (352)
254 PF10282 Lactonase: Lactonase, 99.4 1.9E-09 4.1E-14 110.9 36.7 257 14-326 37-324 (345)
255 KOG1409 Uncharacterized conser 99.4 1.4E-11 3E-16 114.6 17.8 245 7-283 18-271 (404)
256 TIGR02800 propeller_TolB tol-p 99.4 8.6E-11 1.9E-15 125.9 25.9 204 36-316 171-386 (417)
257 KOG3881 Uncharacterized conser 99.4 3.1E-11 6.7E-16 114.4 18.9 225 14-305 106-342 (412)
258 TIGR03300 assembly_YfgL outer 99.4 8.3E-10 1.8E-14 116.0 32.3 310 215-664 65-376 (377)
259 PRK04792 tolB translocation pr 99.4 6.6E-11 1.4E-15 125.6 21.6 221 6-304 210-446 (448)
260 TIGR02800 propeller_TolB tol-p 99.4 6.3E-11 1.4E-15 126.9 21.7 218 7-302 183-416 (417)
261 COG5354 Uncharacterized protei 99.4 8.3E-10 1.8E-14 108.6 26.6 238 13-326 32-308 (561)
262 PRK01029 tolB translocation pr 99.3 1.6E-10 3.5E-15 121.6 23.6 225 7-306 178-426 (428)
263 PRK00178 tolB translocation pr 99.3 1.1E-10 2.4E-15 124.9 22.6 221 7-305 192-428 (430)
264 KOG2314 Translation initiation 99.3 1.2E-09 2.7E-14 108.3 27.6 150 62-268 212-361 (698)
265 KOG4547 WD40 repeat-containing 99.3 9.4E-11 2E-15 117.6 20.1 144 172-326 72-222 (541)
266 PRK00178 tolB translocation pr 99.3 5.5E-10 1.2E-14 119.6 27.0 212 36-325 180-407 (430)
267 PRK04792 tolB translocation pr 99.3 3.8E-10 8.2E-15 119.9 25.4 212 36-324 199-425 (448)
268 KOG2314 Translation initiation 99.3 3.1E-09 6.7E-14 105.5 29.0 322 205-671 212-577 (698)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.6E-09 1.9E-13 102.5 32.2 236 406-671 75-334 (352)
270 PRK01029 tolB translocation pr 99.3 7.5E-10 1.6E-14 116.6 26.3 178 493-701 232-425 (428)
271 KOG4532 WD40-like repeat conta 99.3 5E-10 1.1E-14 100.7 20.9 248 17-327 71-334 (344)
272 TIGR03300 assembly_YfgL outer 99.3 4.4E-09 9.6E-14 110.6 32.0 305 170-620 65-376 (377)
273 COG2706 3-carboxymuconate cycl 99.3 5.1E-09 1.1E-13 99.4 28.5 258 11-327 37-324 (346)
274 COG2706 3-carboxymuconate cycl 99.3 1.7E-08 3.6E-13 96.0 30.0 274 34-417 15-322 (346)
275 KOG1064 RAVE (regulator of V-A 99.2 4.6E-11 1E-15 133.6 12.1 224 11-317 2206-2439(2439)
276 KOG4547 WD40 repeat-containing 99.2 1E-09 2.2E-14 110.3 19.6 167 171-362 6-193 (541)
277 KOG0309 Conserved WD40 repeat- 99.2 4.3E-10 9.2E-15 115.1 14.8 307 14-417 25-340 (1081)
278 KOG4190 Uncharacterized conser 99.2 2.1E-10 4.6E-15 113.2 11.4 249 5-323 727-987 (1034)
279 KOG0280 Uncharacterized conser 99.2 4.4E-09 9.6E-14 96.2 18.9 234 24-326 83-335 (339)
280 KOG4190 Uncharacterized conser 99.1 3.2E-10 6.8E-15 112.0 11.0 192 168-418 745-950 (1034)
281 PRK11138 outer membrane biogen 99.1 1.7E-07 3.8E-12 98.8 32.3 323 215-666 69-393 (394)
282 PF15492 Nbas_N: Neuroblastoma 99.1 9.7E-08 2.1E-12 88.1 25.7 239 19-327 3-262 (282)
283 COG5170 CDC55 Serine/threonine 99.1 4.4E-09 9.6E-14 96.7 15.9 178 489-668 170-368 (460)
284 KOG1064 RAVE (regulator of V-A 99.1 8.1E-10 1.8E-14 124.0 12.3 191 58-327 2206-2401(2439)
285 PRK11138 outer membrane biogen 99.0 4.5E-07 9.8E-12 95.7 30.7 144 170-327 69-226 (394)
286 KOG3914 WD repeat protein WDR4 99.0 4.3E-09 9.4E-14 100.8 13.6 159 494-671 65-227 (390)
287 PLN02919 haloacid dehalogenase 99.0 4E-07 8.7E-12 106.2 31.2 250 17-327 571-891 (1057)
288 PF13360 PQQ_2: PQQ-like domai 99.0 2.3E-07 5.1E-12 90.8 24.3 227 34-327 2-233 (238)
289 PRK04043 tolB translocation pr 99.0 3.7E-07 8.1E-12 95.5 26.6 193 62-326 189-402 (419)
290 KOG4532 WD40-like repeat conta 99.0 2.7E-07 5.8E-12 83.6 21.4 239 400-670 86-334 (344)
291 KOG4714 Nucleoporin [Nuclear s 98.9 3.2E-08 6.9E-13 89.0 14.3 217 52-326 28-256 (319)
292 PRK04043 tolB translocation pr 98.9 2.8E-07 6E-12 96.5 24.0 206 15-299 189-416 (419)
293 COG5170 CDC55 Serine/threonine 98.9 3E-08 6.6E-13 91.3 13.8 291 13-324 26-367 (460)
294 KOG3914 WD repeat protein WDR4 98.9 1.3E-08 2.9E-13 97.6 11.8 106 176-292 128-233 (390)
295 PLN02919 haloacid dehalogenase 98.9 2.9E-06 6.2E-11 99.2 32.7 129 542-671 741-892 (1057)
296 PF07433 DUF1513: Protein of u 98.9 1.6E-06 3.6E-11 83.0 24.5 256 13-319 4-280 (305)
297 KOG0309 Conserved WD40 repeat- 98.9 2E-08 4.3E-13 103.3 12.2 246 15-326 69-341 (1081)
298 PF08450 SGL: SMP-30/Gluconola 98.8 1.1E-05 2.3E-10 79.1 29.2 219 18-313 4-244 (246)
299 KOG0280 Uncharacterized conser 98.8 1.3E-06 2.7E-11 80.5 20.3 167 510-701 93-264 (339)
300 PF15492 Nbas_N: Neuroblastoma 98.8 5.6E-06 1.2E-10 76.7 24.3 208 440-671 2-263 (282)
301 PF13360 PQQ_2: PQQ-like domai 98.8 1.8E-05 4E-10 77.3 29.8 146 171-327 37-194 (238)
302 KOG3617 WD40 and TPR repeat-co 98.7 4.4E-07 9.5E-12 95.1 17.7 293 15-362 61-364 (1416)
303 KOG1920 IkappaB kinase complex 98.7 6.4E-05 1.4E-09 83.2 34.8 234 14-326 69-324 (1265)
304 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00011 2.3E-09 67.0 30.0 104 215-327 23-126 (354)
305 KOG1897 Damage-specific DNA bi 98.7 0.00096 2.1E-08 72.7 50.2 169 542-722 489-669 (1096)
306 KOG4714 Nucleoporin [Nuclear s 98.7 7.1E-07 1.5E-11 80.6 15.5 164 198-417 84-255 (319)
307 PF07433 DUF1513: Protein of u 98.7 1.2E-05 2.5E-10 77.3 23.3 102 205-312 6-116 (305)
308 PF08450 SGL: SMP-30/Gluconola 98.7 6.1E-05 1.3E-09 73.8 29.1 210 64-362 3-233 (246)
309 KOG1920 IkappaB kinase complex 98.6 9E-05 1.9E-09 82.1 32.2 157 492-667 196-365 (1265)
310 KOG0882 Cyclophilin-related pe 98.6 1.5E-06 3.3E-11 84.7 16.6 317 171-567 21-369 (558)
311 KOG1645 RING-finger-containing 98.6 2.6E-06 5.7E-11 82.0 17.9 263 1-324 181-461 (463)
312 KOG1832 HIV-1 Vpr-binding prot 98.6 2.1E-08 4.6E-13 105.1 3.3 219 8-312 1096-1319(1516)
313 PF06433 Me-amine-dh_H: Methyl 98.6 0.00015 3.3E-09 70.6 28.7 163 503-671 148-324 (342)
314 KOG2066 Vacuolar assembly/sort 98.6 1.6E-06 3.4E-11 91.1 16.1 193 14-282 40-233 (846)
315 KOG1897 Damage-specific DNA bi 98.6 0.0023 4.9E-08 69.9 51.4 537 21-701 265-879 (1096)
316 cd00216 PQQ_DH Dehydrogenases 98.5 0.00013 2.8E-09 78.9 30.6 153 170-327 61-267 (488)
317 KOG2695 WD40 repeat protein [G 98.5 4.7E-07 1E-11 85.1 9.7 142 172-327 226-379 (425)
318 KOG0882 Cyclophilin-related pe 98.5 1.4E-06 3.1E-11 84.9 13.2 255 12-327 8-308 (558)
319 KOG2695 WD40 repeat protein [G 98.5 3.1E-07 6.6E-12 86.3 8.1 151 82-293 228-387 (425)
320 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00079 1.7E-08 61.5 28.7 143 25-233 23-165 (354)
321 cd00216 PQQ_DH Dehydrogenases 98.5 0.00033 7.1E-09 75.9 31.0 242 25-327 61-377 (488)
322 PF11768 DUF3312: Protein of u 98.5 0.0018 4E-08 66.9 33.7 74 541-627 260-333 (545)
323 PF00400 WD40: WD domain, G-be 98.5 6.8E-07 1.5E-11 58.1 6.3 39 284-322 1-39 (39)
324 KOG3617 WD40 and TPR repeat-co 98.5 2.1E-05 4.6E-10 83.0 20.2 108 208-325 20-132 (1416)
325 PF00400 WD40: WD domain, G-be 98.4 5E-07 1.1E-11 58.7 5.5 39 572-621 1-39 (39)
326 KOG2114 Vacuolar assembly/sort 98.4 2.3E-05 5.1E-10 83.2 20.5 203 20-294 30-256 (933)
327 PRK02888 nitrous-oxide reducta 98.4 7.7E-05 1.7E-09 78.8 23.8 157 483-668 228-405 (635)
328 KOG1275 PAB-dependent poly(A) 98.4 4.8E-06 1.1E-10 88.6 14.1 178 79-322 148-340 (1118)
329 PF08596 Lgl_C: Lethal giant l 98.4 0.00062 1.3E-08 70.2 29.2 252 15-325 3-336 (395)
330 KOG1645 RING-finger-containing 98.4 5.1E-05 1.1E-09 73.4 19.0 271 276-623 175-461 (463)
331 PF06433 Me-amine-dh_H: Methyl 98.3 0.0032 7E-08 61.6 30.9 81 542-634 239-331 (342)
332 KOG3621 WD40 repeat-containing 98.3 3.4E-05 7.3E-10 80.3 18.4 156 53-272 26-189 (726)
333 KOG1832 HIV-1 Vpr-binding prot 98.3 3.1E-07 6.8E-12 96.6 3.3 201 52-327 1094-1294(1516)
334 KOG2114 Vacuolar assembly/sort 98.3 0.00016 3.6E-09 77.1 23.0 128 492-636 126-256 (933)
335 KOG2066 Vacuolar assembly/sort 98.3 9E-05 2E-09 78.4 20.8 139 165-327 44-190 (846)
336 KOG3621 WD40 repeat-containing 98.2 0.00025 5.3E-09 74.2 21.8 117 202-325 32-155 (726)
337 PF11768 DUF3312: Protein of u 98.2 0.0018 4E-08 66.9 26.7 105 592-701 258-368 (545)
338 PF06977 SdiA-regulated: SdiA- 98.2 0.0015 3.3E-08 62.2 24.7 207 53-321 15-247 (248)
339 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0015 3.3E-08 67.6 26.7 227 22-326 1-268 (353)
340 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0061 1.3E-07 66.3 31.7 116 170-291 69-198 (527)
341 COG0823 TolB Periplasmic compo 98.1 6.8E-05 1.5E-09 78.0 15.7 184 492-714 193-390 (425)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.024 5.2E-07 61.7 36.6 62 264-327 69-141 (527)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.00097 2.1E-08 69.8 22.5 220 15-326 34-264 (443)
344 PF06977 SdiA-regulated: SdiA- 98.0 0.0015 3.2E-08 62.3 20.6 210 492-718 22-247 (248)
345 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.012 2.5E-07 61.1 28.8 151 490-657 182-347 (353)
346 PRK02888 nitrous-oxide reducta 97.9 0.013 2.7E-07 62.6 27.2 103 211-325 284-405 (635)
347 COG0823 TolB Periplasmic compo 97.9 0.00053 1.1E-08 71.5 17.0 182 10-265 189-381 (425)
348 KOG1275 PAB-dependent poly(A) 97.9 0.00059 1.3E-08 73.4 17.0 190 169-419 146-345 (1118)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0062 1.3E-07 63.9 24.5 181 60-327 32-224 (443)
350 PF08596 Lgl_C: Lethal giant l 97.9 0.0053 1.2E-07 63.4 23.7 161 162-327 89-293 (395)
351 TIGR03074 PQQ_membr_DH membran 97.9 0.092 2E-06 59.3 36.1 122 170-291 194-353 (764)
352 PF02897 Peptidase_S9_N: Proly 97.7 0.023 4.9E-07 60.8 27.1 243 15-327 125-407 (414)
353 PF04841 Vps16_N: Vps16, N-ter 97.7 0.032 6.9E-07 58.7 27.3 178 89-326 62-248 (410)
354 PF04841 Vps16_N: Vps16, N-ter 97.7 0.013 2.8E-07 61.6 24.3 67 18-97 33-110 (410)
355 COG3386 Gluconolactonase [Carb 97.7 0.015 3.3E-07 57.7 23.1 111 197-314 156-275 (307)
356 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0036 7.8E-08 50.0 14.9 101 543-662 2-109 (111)
357 KOG4640 Anaphase-promoting com 97.7 0.00016 3.6E-09 74.4 9.4 93 542-646 22-115 (665)
358 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0037 8E-08 50.0 14.4 100 206-319 2-109 (111)
359 COG3391 Uncharacterized conser 97.6 0.022 4.9E-07 59.4 24.0 219 17-305 77-309 (381)
360 PF14583 Pectate_lyase22: Olig 97.6 0.039 8.4E-07 55.4 23.8 158 491-667 187-381 (386)
361 PRK13616 lipoprotein LpqB; Pro 97.6 0.0056 1.2E-07 66.9 19.5 197 492-719 350-565 (591)
362 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.027 5.8E-07 58.1 23.1 97 537-633 304-408 (415)
363 PF03178 CPSF_A: CPSF A subuni 97.6 0.035 7.6E-07 56.8 24.5 222 35-322 2-263 (321)
364 PF05096 Glu_cyclase_2: Glutam 97.5 0.033 7.2E-07 52.8 20.8 211 484-720 37-258 (264)
365 PF08553 VID27: VID27 cytoplas 97.5 0.011 2.4E-07 65.6 20.1 191 505-719 545-768 (794)
366 PF00780 CNH: CNH domain; Int 97.5 0.14 3E-06 51.1 26.9 154 502-671 104-259 (275)
367 PF14583 Pectate_lyase22: Olig 97.4 0.053 1.2E-06 54.5 22.5 241 20-311 42-299 (386)
368 COG3386 Gluconolactonase [Carb 97.4 0.11 2.4E-06 51.7 24.7 147 542-714 112-277 (307)
369 KOG4640 Anaphase-promoting com 97.4 0.00077 1.7E-08 69.7 9.8 95 593-700 20-115 (665)
370 COG3391 Uncharacterized conser 97.4 0.022 4.7E-07 59.5 21.0 197 494-722 76-284 (381)
371 PF03178 CPSF_A: CPSF A subuni 97.4 0.02 4.4E-07 58.6 20.3 169 482-669 14-204 (321)
372 PF08553 VID27: VID27 cytoplas 97.4 0.0096 2.1E-07 66.0 18.4 140 177-324 501-647 (794)
373 COG3204 Uncharacterized protei 97.4 0.062 1.3E-06 51.0 20.7 213 491-718 85-309 (316)
374 PF02897 Peptidase_S9_N: Proly 97.4 0.28 6.1E-06 52.4 30.6 102 561-674 300-411 (414)
375 PRK13616 lipoprotein LpqB; Pro 97.3 0.0076 1.6E-07 65.9 16.9 95 14-123 350-462 (591)
376 KOG1008 Uncharacterized conser 97.3 6E-05 1.3E-09 77.4 0.8 146 172-323 72-224 (783)
377 PF05096 Glu_cyclase_2: Glutam 97.3 0.15 3.3E-06 48.5 24.6 197 51-314 35-250 (264)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.14 3E-06 52.9 24.5 100 18-118 6-118 (415)
379 KOG1008 Uncharacterized conser 97.3 6.9E-05 1.5E-09 77.0 0.5 203 62-326 58-277 (783)
380 PF00780 CNH: CNH domain; Int 97.3 0.2 4.3E-06 50.0 25.3 232 23-327 5-258 (275)
381 PF10647 Gmad1: Lipoprotein Lp 97.2 0.11 2.4E-06 50.6 21.7 193 492-717 24-233 (253)
382 PF14870 PSII_BNR: Photosynthe 97.1 0.34 7.3E-06 48.0 32.0 139 200-362 141-284 (302)
383 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.7E-08 42.0 4.9 36 6-41 5-40 (40)
384 COG3490 Uncharacterized protei 97.0 0.35 7.6E-06 45.7 21.3 104 234-362 57-170 (366)
385 PRK13684 Ycf48-like protein; P 97.0 0.56 1.2E-05 48.0 29.1 107 203-319 172-283 (334)
386 smart00320 WD40 WD40 repeats. 97.0 0.0024 5.1E-08 40.7 5.4 39 284-322 2-40 (40)
387 PF07995 GSDH: Glucose / Sorbo 96.9 0.58 1.2E-05 47.8 25.0 110 205-317 3-136 (331)
388 PF10647 Gmad1: Lipoprotein Lp 96.9 0.14 3.1E-06 49.8 19.6 151 15-224 25-186 (253)
389 COG3204 Uncharacterized protei 96.9 0.45 9.8E-06 45.4 21.1 203 11-274 83-304 (316)
390 KOG2079 Vacuolar assembly/sort 96.8 0.018 3.9E-07 63.9 13.3 83 24-116 98-180 (1206)
391 PRK10115 protease 2; Provision 96.8 0.87 1.9E-05 51.7 27.2 71 15-98 128-209 (686)
392 COG3490 Uncharacterized protei 96.8 0.16 3.5E-06 47.8 17.1 149 542-710 69-242 (366)
393 PF12894 Apc4_WD40: Anaphase-p 96.7 0.005 1.1E-07 40.9 5.4 35 11-46 9-43 (47)
394 PHA02713 hypothetical protein; 96.7 0.17 3.6E-06 55.9 20.4 64 171-237 305-379 (557)
395 KOG4499 Ca2+-binding protein R 96.7 0.21 4.5E-06 45.6 16.8 96 205-304 159-263 (310)
396 PF13449 Phytase-like: Esteras 96.5 1.2 2.5E-05 45.5 24.2 175 492-668 20-250 (326)
397 PF07995 GSDH: Glucose / Sorbo 96.4 1.3 2.8E-05 45.3 29.1 58 256-314 4-71 (331)
398 PF12894 Apc4_WD40: Anaphase-p 96.4 0.01 2.2E-07 39.4 5.1 35 592-627 10-44 (47)
399 COG1520 FOG: WD40-like repeat 96.4 1.2 2.6E-05 46.7 23.4 231 24-325 68-306 (370)
400 KOG2395 Protein involved in va 96.3 0.059 1.3E-06 55.1 12.4 148 24-232 344-499 (644)
401 PF14870 PSII_BNR: Photosynthe 96.3 1.3 2.9E-05 43.9 31.8 156 489-664 142-301 (302)
402 KOG4441 Proteins containing BT 96.2 0.66 1.4E-05 51.1 20.9 164 171-360 334-520 (571)
403 KOG2079 Vacuolar assembly/sort 96.2 0.092 2E-06 58.6 14.0 101 81-233 102-203 (1206)
404 PHA02713 hypothetical protein; 96.1 0.36 7.8E-06 53.3 18.7 144 171-326 353-535 (557)
405 TIGR03074 PQQ_membr_DH membran 96.1 1.6 3.5E-05 49.6 23.4 82 25-106 194-288 (764)
406 KOG2444 WD40 repeat protein [G 96.1 0.0062 1.4E-07 55.2 3.6 144 172-327 32-180 (238)
407 KOG2395 Protein involved in va 96.0 0.09 1.9E-06 53.9 11.7 146 172-325 348-501 (644)
408 TIGR03118 PEPCTERM_chp_1 conse 96.0 1.7 3.6E-05 42.1 24.3 233 16-304 25-307 (336)
409 KOG2444 WD40 repeat protein [G 95.9 0.03 6.6E-07 50.9 7.4 104 551-667 69-177 (238)
410 KOG4441 Proteins containing BT 95.9 1.5 3.2E-05 48.5 21.7 135 171-317 382-534 (571)
411 COG3823 Glutamine cyclotransfe 95.8 0.51 1.1E-05 42.4 14.0 181 511-720 67-256 (262)
412 KOG4499 Ca2+-binding protein R 95.7 1.3 2.7E-05 40.8 16.5 95 496-602 162-262 (310)
413 COG3292 Predicted periplasmic 95.7 2.9 6.4E-05 44.0 20.9 71 252-325 163-234 (671)
414 PRK13684 Ycf48-like protein; P 95.6 0.84 1.8E-05 46.7 17.7 155 13-232 172-330 (334)
415 PF15390 DUF4613: Domain of un 95.5 0.49 1.1E-05 49.7 15.1 129 536-671 52-190 (671)
416 PF05694 SBP56: 56kDa selenium 95.4 3.8 8.3E-05 42.1 25.2 148 171-323 88-276 (461)
417 PF10433 MMS1_N: Mono-function 95.3 5.7 0.00012 43.7 42.6 84 212-303 219-308 (504)
418 PF12234 Rav1p_C: RAVE protein 95.3 0.98 2.1E-05 49.3 17.0 112 542-666 31-155 (631)
419 PF15390 DUF4613: Domain of un 95.3 0.88 1.9E-05 47.9 15.8 119 492-622 57-185 (671)
420 PF10168 Nup88: Nuclear pore c 95.2 7 0.00015 44.2 27.8 81 492-572 85-181 (717)
421 COG5276 Uncharacterized conser 95.2 3 6.6E-05 39.9 27.9 156 252-465 85-243 (370)
422 COG5290 IkappaB kinase complex 95.2 0.38 8.2E-06 52.0 13.3 117 592-722 245-367 (1243)
423 TIGR02604 Piru_Ver_Nterm putat 95.0 1.2 2.6E-05 46.4 16.9 142 541-712 14-202 (367)
424 PHA03098 kelch-like protein; P 95.0 1.2 2.6E-05 49.5 17.8 144 171-326 344-513 (534)
425 KOG2377 Uncharacterized conser 94.9 0.64 1.4E-05 47.0 13.3 141 496-655 27-171 (657)
426 PF10313 DUF2415: Uncharacteri 94.9 0.091 2E-06 33.7 4.9 31 14-44 1-34 (43)
427 PF08728 CRT10: CRT10; InterP 94.9 1.3 2.8E-05 48.9 16.7 152 25-232 49-245 (717)
428 PLN00033 photosystem II stabil 94.8 3.2 6.9E-05 43.3 18.8 148 16-230 241-396 (398)
429 PF10214 Rrn6: RNA polymerase 94.7 4.5 9.7E-05 46.9 21.8 162 540-722 79-277 (765)
430 PF10395 Utp8: Utp8 family; I 94.7 8.3 0.00018 42.3 21.9 224 478-722 58-306 (670)
431 PF12234 Rav1p_C: RAVE protein 94.7 0.85 1.8E-05 49.8 14.7 125 593-723 29-158 (631)
432 KOG3630 Nuclear pore complex, 94.7 0.38 8.2E-06 54.3 12.1 147 58-265 98-255 (1405)
433 TIGR02604 Piru_Ver_Nterm putat 94.6 1.6 3.5E-05 45.5 16.5 151 492-656 14-202 (367)
434 PHA03098 kelch-like protein; P 94.6 1.5 3.4E-05 48.6 17.4 108 169-286 294-418 (534)
435 KOG1916 Nuclear protein, conta 94.3 0.025 5.5E-07 61.3 2.2 182 9-238 128-328 (1283)
436 PF14781 BBS2_N: Ciliary BBSom 94.1 1.4 3.1E-05 36.8 11.5 110 547-671 5-129 (136)
437 PF05694 SBP56: 56kDa selenium 93.9 7.9 0.00017 40.0 18.6 217 502-728 86-349 (461)
438 KOG1898 Splicing factor 3b, su 93.7 16 0.00035 41.8 34.0 110 546-669 939-1050(1205)
439 KOG2377 Uncharacterized conser 93.7 2 4.4E-05 43.6 13.8 109 11-128 64-173 (657)
440 KOG2280 Vacuolar assembly/sort 93.6 14 0.0003 40.7 20.6 52 274-327 64-115 (829)
441 PF08728 CRT10: CRT10; InterP 93.5 3 6.6E-05 46.1 16.0 165 503-667 49-246 (717)
442 PHA02790 Kelch-like protein; P 93.5 4.9 0.00011 43.7 18.0 108 169-287 271-389 (480)
443 TIGR03118 PEPCTERM_chp_1 conse 93.4 8.4 0.00018 37.5 23.0 220 63-327 25-282 (336)
444 COG4590 ABC-type uncharacteriz 93.3 3.4 7.4E-05 42.0 14.6 159 492-670 221-389 (733)
445 PF14761 HPS3_N: Hermansky-Pud 93.1 2.6 5.7E-05 38.7 12.5 104 553-670 29-166 (215)
446 KOG3630 Nuclear pore complex, 93.0 1.1 2.4E-05 50.9 11.9 155 484-655 93-261 (1405)
447 PF10168 Nup88: Nuclear pore c 92.8 3.1 6.7E-05 47.0 15.4 76 593-669 84-181 (717)
448 COG3823 Glutamine cyclotransfe 92.8 7.2 0.00016 35.5 14.3 132 172-313 103-247 (262)
449 PF10313 DUF2415: Uncharacteri 92.6 0.62 1.3E-05 30.0 5.5 31 594-624 1-34 (43)
450 COG5276 Uncharacterized conser 92.4 11 0.00024 36.4 31.7 254 2-327 30-288 (370)
451 PLN00033 photosystem II stabil 92.2 17 0.00037 38.0 30.7 132 205-362 240-379 (398)
452 COG5290 IkappaB kinase complex 92.0 12 0.00026 41.2 17.4 96 205-306 248-348 (1243)
453 KOG1916 Nuclear protein, conta 91.7 0.62 1.3E-05 51.3 7.9 64 547-622 190-264 (1283)
454 PF10214 Rrn6: RNA polymerase 91.7 31 0.00068 40.1 26.3 172 492-668 80-277 (765)
455 KOG1898 Splicing factor 3b, su 91.6 31 0.00066 39.7 32.1 62 266-327 551-621 (1205)
456 PF07569 Hira: TUP1-like enhan 91.5 1.5 3.3E-05 41.4 9.6 80 546-626 16-98 (219)
457 PHA02790 Kelch-like protein; P 91.5 11 0.00023 41.1 17.5 102 171-285 364-473 (480)
458 KOG2280 Vacuolar assembly/sort 91.3 12 0.00027 41.0 16.7 179 87-327 63-249 (829)
459 COG5167 VID27 Protein involved 91.2 15 0.00033 38.2 16.4 143 173-325 483-633 (776)
460 PF14269 Arylsulfotran_2: Aryl 91.1 16 0.00035 36.6 16.8 125 542-667 58-220 (299)
461 PRK10115 protease 2; Provision 90.9 34 0.00074 39.1 24.1 54 61-122 127-185 (686)
462 TIGR03606 non_repeat_PQQ dehyd 90.6 21 0.00045 37.9 17.6 173 531-721 20-238 (454)
463 PF02333 Phytase: Phytase; In 90.3 24 0.00052 36.3 20.8 197 171-417 69-291 (381)
464 PRK13615 lipoprotein LpqB; Pro 90.2 32 0.0007 37.7 20.0 92 17-123 337-431 (557)
465 PF12657 TFIIIC_delta: Transcr 90.0 2.4 5.1E-05 38.5 9.2 85 11-97 2-122 (173)
466 PF14727 PHTB1_N: PTHB1 N-term 89.7 29 0.00063 36.4 33.8 156 24-232 36-203 (418)
467 KOG2247 WD40 repeat-containing 89.4 0.049 1.1E-06 55.2 -2.3 149 65-282 39-188 (615)
468 PF13449 Phytase-like: Esteras 89.3 23 0.00051 36.1 16.8 105 206-311 87-231 (326)
469 PF07569 Hira: TUP1-like enhan 89.2 2.1 4.5E-05 40.5 8.4 74 211-285 18-98 (219)
470 KOG2247 WD40 repeat-containing 89.1 0.061 1.3E-06 54.5 -1.9 145 19-230 40-185 (615)
471 KOG3616 Selective LIM binding 88.7 3.9 8.4E-05 44.3 10.5 79 12-105 13-91 (1636)
472 KOG1983 Tomosyn and related SN 88.7 8.8 0.00019 45.4 14.7 71 252-327 197-267 (993)
473 PF12657 TFIIIC_delta: Transcr 88.4 3.3 7E-05 37.6 8.9 40 637-676 86-130 (173)
474 PF11715 Nup160: Nucleoporin N 88.3 3 6.5E-05 46.4 10.5 75 169-243 157-258 (547)
475 TIGR02276 beta_rpt_yvtn 40-res 88.1 2.1 4.5E-05 27.6 5.6 31 550-580 1-32 (42)
476 PF14781 BBS2_N: Ciliary BBSom 88.0 15 0.00033 31.0 12.5 108 599-721 4-125 (136)
477 TIGR02276 beta_rpt_yvtn 40-res 87.0 3.3 7.1E-05 26.6 6.0 41 603-645 1-42 (42)
478 PF14727 PHTB1_N: PTHB1 N-term 86.8 45 0.00097 35.1 31.8 116 266-419 39-166 (418)
479 KOG1900 Nuclear pore complex, 86.5 18 0.00039 42.7 14.7 147 32-234 96-273 (1311)
480 COG4590 ABC-type uncharacteriz 86.2 1.9 4.1E-05 43.7 6.2 174 7-237 214-390 (733)
481 PF11725 AvrE: Pathogenicity f 86.1 95 0.0021 38.2 22.4 70 491-569 702-771 (1774)
482 PF14761 HPS3_N: Hermansky-Pud 85.9 29 0.00064 32.2 14.9 148 171-324 29-214 (215)
483 KOG4460 Nuclear pore complex, 85.8 13 0.00029 38.9 12.0 88 542-633 105-208 (741)
484 PRK13615 lipoprotein LpqB; Pro 85.8 37 0.00081 37.2 16.3 160 543-724 336-505 (557)
485 PF12768 Rax2: Cortical protei 85.3 30 0.00064 34.2 14.0 97 561-669 15-123 (281)
486 PF07676 PD40: WD40-like Beta 85.0 3.6 7.9E-05 26.0 5.3 32 9-40 4-38 (39)
487 COG5167 VID27 Protein involved 84.8 20 0.00042 37.5 12.6 146 83-282 485-632 (776)
488 PRK13613 lipoprotein LpqB; Pro 84.7 72 0.0016 35.6 19.4 98 15-124 364-470 (599)
489 KOG1900 Nuclear pore complex, 84.6 10 0.00022 44.5 11.8 141 176-327 95-275 (1311)
490 TIGR03548 mutarot_permut cycli 84.2 52 0.0011 33.6 19.5 99 214-316 72-182 (323)
491 PF11715 Nup160: Nucleoporin N 83.5 7.3 0.00016 43.4 10.4 77 23-107 156-259 (547)
492 PLN02193 nitrile-specifier pro 83.5 72 0.0016 34.7 18.3 67 171-238 330-415 (470)
493 PRK13613 lipoprotein LpqB; Pro 83.4 48 0.001 36.9 16.1 159 542-722 364-540 (599)
494 TIGR03548 mutarot_permut cycli 83.1 58 0.0012 33.3 20.2 65 171-237 125-198 (323)
495 KOG1896 mRNA cleavage and poly 82.5 1.1E+02 0.0024 36.2 38.0 42 81-122 639-681 (1366)
496 PF12768 Rax2: Cortical protei 82.2 8.7 0.00019 37.8 9.0 98 614-722 15-124 (281)
497 smart00036 CNH Domain found in 82.2 59 0.0013 32.7 18.5 187 548-795 9-219 (302)
498 PF11725 AvrE: Pathogenicity f 81.9 74 0.0016 39.1 17.3 289 14-322 438-770 (1774)
499 PF07676 PD40: WD40-like Beta 81.8 5.4 0.00012 25.2 5.1 29 592-620 7-38 (39)
500 PF11635 Med16: Mediator compl 81.7 1.1E+02 0.0024 35.5 20.0 70 592-662 258-345 (753)
No 1
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-89 Score=674.01 Aligned_cols=672 Identities=33% Similarity=0.570 Sum_probs=567.2
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
|.||||||++|.|++|+|||||.+.+.||+++.+|.|+|||+.. .|+++.+++|+..+.|++|+|++.+ |
T Consensus 13 m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~~-------R 82 (691)
T KOG2048|consen 13 MQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEGG-------R 82 (691)
T ss_pred eEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccCC-------e
Confidence 88999999999999999999999999999999999999999976 6899999999999999999999554 5
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|+|.+.+|+|..||+.+++++..++..++.||+|+.+|.+
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~---------------------------------------- 122 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN---------------------------------------- 122 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc----------------------------------------
Confidence 9999999999999999999999999999999999999998
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
..+++||+||.+..++.. .+.+.+.+.|...+++|.+++|+|++..|++|+.||.|++||+.++..+..
T Consensus 123 ----------~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 123 ----------TILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred ----------ceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence 489999999977777775 678888899999999999999999999999999999999999999999987
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
.+....+..+.....||++.|..+++|++|++.|+|++||...|++++.+..|.++|.||+.++++++++++|.|+.|..
T Consensus 192 ~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 192 ITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred eeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 77666666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
|...+.. ..|+.......|.++|++++.. + ..
T Consensus 272 ~~~~~~~-------------~~wv~~~~r~~h~hdvrs~av~---------~--------------------------~~ 303 (691)
T KOG2048|consen 272 YSLTTNK-------------SEWVINSRRDLHAHDVRSMAVI---------E--------------------------NA 303 (691)
T ss_pred EEecCCc-------------cceeeeccccCCcccceeeeee---------c--------------------------ce
Confidence 9988765 3499999999999999999985 1 28
Q ss_pred EEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEE-EEEeCCeEEEEEecccCCcccCCCCCCCCc
Q 003467 401 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL-LVQYSCRLDILSVRLENNVESRSSSGGHAS 479 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~ 479 (817)
+++||.|..+.+-....++..........+... .+...+..++ +......+.+|++.... ..|+.+
T Consensus 304 l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~------~v~~a~~~~L~~~w~~h~v~lwrlGS~~-------~~g~~~ 370 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSREFKNMDHRQKNLFPASD------RVSVAPENRLLVLWKAHGVDLWRLGSVI-------LQGEYN 370 (691)
T ss_pred EEecceeeEEEEccccccCchhhhccccccccc------eeecCccceEEEEeccccccceeccCcc-------cccccC
Confidence 999999999999888775543333222233222 2233444444 44557799999988664 345677
Q ss_pred cceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe
Q 003467 480 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 559 (817)
Q Consensus 480 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~ 559 (817)
+.++.++..+....|.|.++||+|+++++++-..+++|.+.... ..+. .....++.....+..+.|+-|++.++.++
T Consensus 371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~--~~v~~~~~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 371 YIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKV--INVDDVPLALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred hhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeE--EEeccchhhhccceeeEEEecCceEEEEe
Confidence 88999999999999999999999999999999999999998732 3332 22234455555788999999999998888
Q ss_pred -cCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 003467 560 -HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 636 (817)
Q Consensus 560 -~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~ 636 (817)
....+.++++++.. .+..+... .....|+.++.||||+|||+.+.+|.|.+|++++++.++......
T Consensus 448 ~~~~~le~~el~~ps~kel~~~~~~---------~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln- 517 (691)
T KOG2048|consen 448 KNIFSLEEFELETPSFKELKSIQSQ---------AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN- 517 (691)
T ss_pred cccceeEEEEecCcchhhhhccccc---------cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC-
Confidence 67788888886543 33333321 256789999999999999999999999999999999988776766
Q ss_pred CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEE
Q 003467 637 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC 716 (817)
Q Consensus 637 ~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~ 716 (817)
..+++++|+|.+.+.|+++++|++++.||++..++++||+.++..+|+.+......+.++.|+|. ++.++|+|++.|+|
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~-n~s~~~~~~a~w~~ 596 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPK-NSSRFIVYDAHWSC 596 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCC-CccEEEEEcCcEEE
Confidence 69999999976888999999999999999999999999999999999999999999999999986 89999999999999
Q ss_pred EEEcCCCCCCCCcCccccCCchhhhhhccCCcccccccc-cccccccccccccCcceEEEeeccceEEeeccCCCeEEEE
Q 003467 717 VIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRK-LRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLII 795 (817)
Q Consensus 717 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lv~v 795 (817)
++|+++|++.+++..+.. .+ +. .+++.-|. ..+..-.+...+....|++.++|+|+||++.|+++|||+|
T Consensus 597 ~id~~~~lp~~~~~~~~~--~~---kt----~egn~~~~~~~g~~l~~~~~~~~~~f~~t~~y~pllfv~~ls~nel~~v 667 (691)
T KOG2048|consen 597 LIDFSLPLPSDEDGPLKA--LK---KT----REGNLTRLLVNGNRLREYGEENGDGFKITKKYRPLLFVGLLSPNELVNV 667 (691)
T ss_pred EEecCCCCCchhhccccc--CC---cc----cccchhhhhcccccchhhcccCCcccceeccccceeeecccCCcceEEE
Confidence 999999998777422211 00 00 00000000 0000011133445678999999999999999999999999
Q ss_pred ec-ChHHHHhcCCC-CcccccCCC
Q 003467 796 DK-PWLEVVKTFDA-PVHRHIYGT 817 (817)
Q Consensus 796 e~-p~~~~~~~lp~-~~~~~~~g~ 817 (817)
|| ||.++.+++|| |++|||||+
T Consensus 668 er~pl~d~~~~~p~~~f~~kKFG~ 691 (691)
T KOG2048|consen 668 ERVPLEDTGKSLPPTPFKRKKFGT 691 (691)
T ss_pred EecchHHhhccCCCCcceecccCC
Confidence 99 99999999986 899999997
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-54 Score=416.73 Aligned_cols=503 Identities=15% Similarity=0.185 Sum_probs=407.0
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+..+..|...++-..|||.|.|+|+|...|+|+|||....+. .+..+++-- .++|..|+|+.|++. |+..|
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h--iLKnef~v~-aG~I~Di~Wd~ds~R------I~avG 122 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH--ILKNEFQVL-AGPIKDISWDFDSKR------IAAVG 122 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce--eeeeeeeec-ccccccceeCCCCcE------EEEEe
Confidence 456789999999999999999999999999999999876432 233344433 679999999999975 88776
Q ss_pred CC--CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 86 ID--GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 86 ~d--~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
+. ....++-+++|..+-.+.+|...|.+++|-|..++
T Consensus 123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPf----------------------------------------- 161 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPF----------------------------------------- 161 (603)
T ss_pred cCccceeEEEEecCCCccceeeccceeEeeeeccCCCce-----------------------------------------
Confidence 53 34555555677888899999999999999998764
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
++++|++|++|.+|+ +..+++..+++.|..-|.|+.|+|||.++++++.||.|.+||-.+|+.+..+..
T Consensus 162 --------Ri~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~ 230 (603)
T KOG0318|consen 162 --------RIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED 230 (603)
T ss_pred --------EEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC
Confidence 999999999999996 668888899999999999999999999999999999999999999999999873
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEE---------------------------------
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA--------------------------------- 289 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------- 289 (817)
...|.+.|.+++|+||+ ++++++.|.+++|||+.+.+++++
T Consensus 231 -----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 231 -----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred -----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 23799999999999999 899999999999999987655444
Q ss_pred ----------eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCcccee
Q 003467 290 ----------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 359 (817)
Q Consensus 290 ----------~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 359 (817)
+.+|...|++++.+||+++|++|+.||.|.-|+..++... -..-+.|+..|.++
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~----------------~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD----------------RLAGKGHTNQIKGM 369 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc----------------ccccccccceEEEE
Confidence 5688999999999999999999999999999999887621 11227799999999
Q ss_pred EeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeec
Q 003467 360 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 439 (817)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (817)
+.+ .. ..+++.+.|.+|++.++.........- .....++ .
T Consensus 370 ~~~---------~~-------------------------~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP-----~ 409 (603)
T KOG0318|consen 370 AAS---------ES-------------------------GELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQP-----K 409 (603)
T ss_pred eec---------CC-------------------------CcEEEEecCCeEEEEecccCcccccce-eecCCCc-----e
Confidence 874 21 379999999999999886543222211 0111111 1
Q ss_pred ceeecCCe-EEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEE
Q 003467 440 NTIFSHTS-LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLF 517 (817)
Q Consensus 440 ~~~~s~~~-~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~ 517 (817)
.++..+++ ..++.....+.+.+-.. .+..+. -.....++|++|++..+|+| .|+++++|
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~-----------------~~~~~~--~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQT-----------------KVSSIP--IGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCC-----------------cceeec--cccccceEEEcCCCCEEEEecccceEEEE
Confidence 55556664 55555555555554111 122222 23667899999999999995 78999999
Q ss_pred EeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee
Q 003467 518 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
.+... .. .....+..|..++++++||||+.+||++...+.+.+||+++.+........ |...|.
T Consensus 471 sl~g~---~l---~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F----------HtakI~ 534 (603)
T KOG0318|consen 471 SLSGD---EL---KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF----------HTAKIN 534 (603)
T ss_pred EecCC---cc---cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee----------eeeeEE
Confidence 99752 21 122456678889999999999999999999999999999988764333332 899999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 598 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 598 ~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
+++|||+.+++|+|+.|.+|.||+++....+..+...|...|+.+.|- |...|++++.|..|++|++.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 999999999999999999999999999887788888888889999998 67789999999999999974
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.6e-54 Score=427.63 Aligned_cols=529 Identities=17% Similarity=0.200 Sum_probs=440.9
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
-+..|++++++||+++|.+++..+.+++|++.+++ +......-|+++|.-++|+|.+.. |++||.|+.|+
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk----~irswKa~He~Pvi~ma~~~~g~L------lAtggaD~~v~ 130 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK----LIRSWKAIHEAPVITMAFDPTGTL------LATGGADGRVK 130 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccch----HhHhHhhccCCCeEEEEEcCCCce------EEeccccceEE
Confidence 34689999999999999999999999999999997 577888856999999999999977 99999999999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
|||+..+.+...|.+|++.|+++.|+|+... .
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~------------------------------------------------~ 162 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR------------------------------------------------W 162 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccch------------------------------------------------h
Confidence 9999999999999999999999999998754 2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.|++|..|+.+++||+..... ....+..|.+.|++++|++|+..+++++.|..|.+||+.+-+....+.
T Consensus 163 lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp--------- 231 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP--------- 231 (775)
T ss_pred heeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec---------
Confidence 899999999999999985544 237888999999999999999999999999999999997777766664
Q ss_pred CceeEEEeEEecC-----C-eEEEEcCCCcEEEEeCCCCeEEEEeecC-ccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 252 PELCIWSLLSLRC-----G-TLVSADSTGSVQFWDSRHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 252 ~~~~v~~v~~~~~-----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
....+.++.+.++ + .+++++.+|.+++||.++++++...... ...+..+...+....++..+.|..+.+||.+
T Consensus 232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 4456677777777 3 7999999999999999999887655433 3336666666666677778889999999988
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
+.+ ....+-+....|..+.|- .|+. ++|+.+
T Consensus 312 ~l~-----------------i~k~ivG~ndEI~Dm~~l--------G~e~------------------------~~laVA 342 (775)
T KOG0319|consen 312 ELT-----------------IVKQIVGYNDEILDMKFL--------GPEE------------------------SHLAVA 342 (775)
T ss_pred ccE-----------------EehhhcCCchhheeeeec--------CCcc------------------------ceEEEE
Confidence 877 778888888999999985 1444 499999
Q ss_pred cCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCccce
Q 003467 405 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSL 482 (817)
Q Consensus 405 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~~~~ 482 (817)
+..+.+++|+..+..-. ....+...+.++....+|.++++.+. .+.+|+++..... ..
T Consensus 343 TNs~~lr~y~~~~~~c~--------ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~------------~~ 402 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQ--------IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK------------SL 402 (775)
T ss_pred eCCCceEEEecCCCceE--------EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch------------hh
Confidence 99999999987764421 23345566667766667777776665 9999999543322 23
Q ss_pred eeeeeecCCCCeEEEEecCCCc-EEEE-EcCCceEEEEeecCCCCCceEEE-eeecCCccccceeEEEEecCCCEEEEEe
Q 003467 483 LVQVKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWII-NKRQLPRKLQFAHSMIFSYDSSQLIIAG 559 (817)
Q Consensus 483 ~~~~~~~~~~~i~~~~~s~~g~-~la~-~~~~~i~l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~fspd~~~l~~~~ 559 (817)
+......+...|.+++++..+. +|++ +.|.++++|.+...+.......+ .+.....|...|++++++|+.+.+|+|+
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 3444466678899999987764 5555 68999999999862222221111 1123445777899999999999999999
Q ss_pred cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCe
Q 003467 560 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 560 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
.|.+.+||+++.++++.++.+ |...|.++.|+|..+.||+++.|++|+||.+++..+..++. .|...|
T Consensus 483 qDktaKiW~le~~~l~~vLsG-----------H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-GH~~aV 550 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSG-----------HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAV 550 (775)
T ss_pred cccceeeecccCceEEEEeeC-----------CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-Ccccee
Confidence 999999999999999999999 99999999999999999999999999999999999998885 466899
Q ss_pred EEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCC
Q 003467 640 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSP 702 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~ 702 (817)
..+.|-. ++..|+++++||.+++|+++++++ .+.+..|++.|++++-+|..
T Consensus 551 lra~F~~-~~~qliS~~adGliKlWnikt~eC-----------~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 551 LRASFIR-NGKQLISAGADGLIKLWNIKTNEC-----------EMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred Eeeeeee-CCcEEEeccCCCcEEEEeccchhh-----------hhhhhhccceeEEEeecCcc
Confidence 9999999 999999999999999999999997 88999999999999999973
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-53 Score=391.72 Aligned_cols=371 Identities=18% Similarity=0.246 Sum_probs=314.2
Q ss_pred CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceee
Q 003467 48 GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 48 ~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~ 127 (817)
..+|...+.|| .+.|.|++|+|+|.. |++|+.|.++++||+.+..+..+.++|...|.|++|+|||
T Consensus 104 vtrCssS~~GH-~e~Vl~~~fsp~g~~------l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg------- 169 (480)
T KOG0271|consen 104 VTRCSSSIAGH-GEAVLSVQFSPTGSR------LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG------- 169 (480)
T ss_pred cceeccccCCC-CCcEEEEEecCCCce------EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-------
Confidence 45677888998 899999999999987 9999999999999999999999999999999999999999
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
..||+|+.||.|++||..+++++- +.|.+|+..|+
T Consensus 170 -------------------------------------------k~iASG~~dg~I~lwdpktg~~~g--~~l~gH~K~It 204 (480)
T KOG0271|consen 170 -------------------------------------------KKIASGSKDGSIRLWDPKTGQQIG--RALRGHKKWIT 204 (480)
T ss_pred -------------------------------------------chhhccccCCeEEEecCCCCCccc--ccccCccccee
Confidence 599999999999999998887764 89999999999
Q ss_pred EEEEcc-----CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC
Q 003467 208 SVTWSA-----DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 282 (817)
Q Consensus 208 ~v~~s~-----dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~ 282 (817)
+++|.| ..++|++++.||+|+|||+..+.++..+. +|...|+|+.|-.+|.|.+|+.|++|++|+..
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--------gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--------GHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--------cCccceEEEEEcCCceEEecCCCceEEEEEcc
Confidence 999965 67899999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 283 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 283 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.|.+...+++|...|+.++.+.|- .|=+|..|.+=+-....+. ..
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy-~LRtgaf~~t~~~~~~~se-----------------------------~~----- 321 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDY-VLRTGAFDHTGRKPKSFSE-----------------------------EQ----- 321 (480)
T ss_pred chhHHHhhcccchheeeeeccchh-hhhccccccccccCCChHH-----------------------------HH-----
Confidence 999999999999999999998652 2333433321111000000 00
Q ss_pred cccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeeccee
Q 003467 363 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 442 (817)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (817)
+.+.-+|..-....++.|++|+.|.++++|+....+
T Consensus 322 ---------------------~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k----------------------- 357 (480)
T KOG0271|consen 322 ---------------------KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK----------------------- 357 (480)
T ss_pred ---------------------HHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----------------------
Confidence 000001111112234589999999999999764311
Q ss_pred ecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecC
Q 003467 443 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG 522 (817)
Q Consensus 443 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~ 522 (817)
T Consensus 358 -------------------------------------------------------------------------------- 357 (480)
T KOG0271|consen 358 -------------------------------------------------------------------------------- 357 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEc
Q 003467 523 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 602 (817)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 602 (817)
..+ ..+.+|..-|+.+.||||++++|+++-|..|++|+-.+|+.+.+|++ |-+.|..++||
T Consensus 358 ---kpi-----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-----------Hv~~VYqvaws 418 (480)
T KOG0271|consen 358 ---KPI-----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-----------HVAAVYQVAWS 418 (480)
T ss_pred ---cch-----hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-----------ccceeEEEEec
Confidence 011 34567777899999999999999999999999999999999999999 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEE
Q 003467 603 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 603 ~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
.|.++|++++.|.+++||++.+.+...-+|. |...|.++.|+| ||..+++++.|..+++|.
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeecccCCC-CCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 9999999999999999999999998877865 567999999999 999999999999999994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-52 Score=380.71 Aligned_cols=297 Identities=25% Similarity=0.369 Sum_probs=266.8
Q ss_pred ceeee-eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 3 IYRNS-SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 3 ~hr~r-~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
|-||. .+.+|.++|.|++|||+|++||+|+.|.++++||+.+..+ ..++.|| ...|.|++|+|||+. |
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp----~~t~KgH-~~WVlcvawsPDgk~------i 172 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP----LFTCKGH-KNWVLCVAWSPDGKK------I 172 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc----ceeecCC-ccEEEEEEECCCcch------h
Confidence 34443 4589999999999999999999999999999999999874 7788898 899999999999998 9
Q ss_pred EEeeCCCeEEEEECCCCeEE-EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 82 FSSSIDGSVSEWDLYDLKQK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|+|+.||+|++||..+|+++ ..+.+|...|.+++|.|-..
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl--------------------------------------- 213 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL--------------------------------------- 213 (480)
T ss_pred hccccCCeEEEecCCCCCcccccccCcccceeEEeeccccc---------------------------------------
Confidence 99999999999999998876 78999999999999998651
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
.+.+++||+++.||.|+|||+..+..+ ..+.+|+..|+|+.|--+ .+|++|+.|++|++|+...|.+...
T Consensus 214 ------~p~~r~las~skDg~vrIWd~~~~~~~---~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 214 ------VPPCRRLASSSKDGSVRIWDTKLGTCV---RTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred ------CCCccceecccCCCCEEEEEccCceEE---EEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHh
Confidence 123369999999999999999866665 889999999999999865 4899999999999999999999999
Q ss_pred EEeecCCCCCCCceeEEEeEEecC------------------------------------C-eEEEEcCCCcEEEEeCCC
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRC------------------------------------G-TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~------------------------------------~-~l~s~~~dg~i~iwd~~~ 283 (817)
+. +|...|+.++.+.| + ++++|+.|.++.+|+...
T Consensus 284 lk--------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~ 355 (480)
T KOG0271|consen 284 LK--------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK 355 (480)
T ss_pred hc--------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence 98 89999999987621 1 599999999999999764
Q ss_pred -CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 284 -GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 284 -~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.+++..+.+|..-|..+.||||++++++++.|..|++|+..+++ .+.++++|-..|..++++
T Consensus 356 ~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-----------------~lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 356 SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-----------------FLASFRGHVAAVYQVAWS 418 (480)
T ss_pred cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc-----------------hhhhhhhccceeEEEEec
Confidence 45888999999999999999999999999999999999999999 789999999999999998
Q ss_pred cccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 363 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.|.+ +|+||+.|.++++|++.+
T Consensus 419 ---------aDsR------------------------LlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 419 ---------ADSR------------------------LLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred ---------cCcc------------------------EEEEcCCCceEEEEEeee
Confidence 6766 999999999999999875
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-47 Score=368.88 Aligned_cols=524 Identities=16% Similarity=0.187 Sum_probs=398.0
Q ss_pred EEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC
Q 003467 18 ALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD 97 (817)
Q Consensus 18 ~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 97 (817)
-|.-.|.|..++-.. ...|.+-++..... ...+.+| ...++-..|||.|-| +|||...|.|+|||...
T Consensus 23 ~ig~dpkgd~ilY~n-Gksv~ir~i~~~~~----~~iYtEH-~~~vtVAkySPsG~y------iASGD~sG~vRIWdtt~ 90 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN-GKSVIIRNIDNPAS----VDIYTEH-AHQVTVAKYSPSGFY------IASGDVSGKVRIWDTTQ 90 (603)
T ss_pred EeccCCCCCeEEEeC-CCEEEEEECCCccc----eeeeccc-cceeEEEEeCCCceE------EeecCCcCcEEEEeccC
Confidence 345567777776653 35688899987762 4445555 889999999999988 99999999999999876
Q ss_pred Ce--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 98 LK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 98 ~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
.+ +..+++...++|..++|++++. ++++
T Consensus 91 ~~hiLKnef~v~aG~I~Di~Wd~ds~--------------------------------------------------RI~a 120 (603)
T KOG0318|consen 91 KEHILKNEFQVLAGPIKDISWDFDSK--------------------------------------------------RIAA 120 (603)
T ss_pred cceeeeeeeeecccccccceeCCCCc--------------------------------------------------EEEE
Confidence 33 3456777889999999999994 4444
Q ss_pred EeC--C--CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 176 ACD--D--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 176 ~~~--d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.++ + |.+.+||. +... -.+.+|..+|++++|-|... +++||++|++|.+|+-.--+....+.
T Consensus 121 vGEGrerfg~~F~~DS--G~Sv---Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r-------- 187 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDS--GNSV---GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR-------- 187 (603)
T ss_pred EecCccceeEEEEecC--CCcc---ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc--------
Confidence 443 2 45666665 5555 78899999999999998765 69999999999999865444444444
Q ss_pred CCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee---cCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 251 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
.|..-|.++.|+||| ++++++.||++.+||..+|+.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.+.
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 689999999999999 89999999999999999999999998 89999999999999999999999999999999876
Q ss_pred cCCCCC----CCC----------------------CccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccccc
Q 003467 327 SIGPND----GLS----------------------SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 380 (817)
Q Consensus 327 ~~~~~~----~~~----------------------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 380 (817)
.....- .+. .--+...-.....+.+|...|++|+.+ |+++
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~---------~d~~----- 333 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS---------PDGK----- 333 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc---------CCCC-----
Confidence 531100 000 000000111345677899999999987 7776
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC-CeEEEEEeCCeEEE
Q 003467 381 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-TSLLLVQYSCRLDI 459 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~i~i 459 (817)
+|++|+.||.|.-|+...+...+ .....+...+..++.+. +..+.+..++.+++
T Consensus 334 -------------------~i~SgsyDG~I~~W~~~~g~~~~------~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 334 -------------------TIYSGSYDGHINSWDSGSGTSDR------LAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred -------------------EEEeeccCceEEEEecCCccccc------cccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 99999999999999998765332 22245666777777777 44455566668877
Q ss_pred EEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCcc
Q 003467 460 LSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRK 539 (817)
Q Consensus 460 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (817)
..+....... -..++.. .+..+++..+++.++++.....|.+..-.. .+. ..+ .
T Consensus 389 ~~~~~~~~t~-------------~~~~~lg--~QP~~lav~~d~~~avv~~~~~iv~l~~~~-----~~~-----~~~-~ 442 (603)
T KOG0318|consen 389 ISLKDNGYTK-------------SEVVKLG--SQPKGLAVLSDGGTAVVACISDIVLLQDQT-----KVS-----SIP-I 442 (603)
T ss_pred EecccCcccc-------------cceeecC--CCceeEEEcCCCCEEEEEecCcEEEEecCC-----cce-----eec-c
Confidence 7665433221 0012222 334488899998887777666666664211 111 111 1
Q ss_pred ccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEE
Q 003467 540 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI 619 (817)
Q Consensus 540 ~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v 619 (817)
.-...+++++||++.+++|+.|+.|+||.+..+++..... ...|.++|++++||||+.|||+++..+.|.+
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~---------~~~h~a~iT~vaySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK---------LLEHRAAITDVAYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee---------eecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence 1157799999999999999999999999998655432211 1128999999999999999999999999999
Q ss_pred EECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEEC
Q 003467 620 FNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFS 699 (817)
Q Consensus 620 wd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~ 699 (817)
||+++.+.....-.+|.+.|.+++|+| ++.++|+|+-|..|.||+++...- .......|...|+.|.|-
T Consensus 514 yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~----------~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 514 YDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAK----------HIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred EEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhh----------heEeccccccCceeEEEe
Confidence 999999876666667889999999999 999999999999999999987642 144466788889999998
Q ss_pred CC
Q 003467 700 PS 701 (817)
Q Consensus 700 p~ 701 (817)
.+
T Consensus 583 de 584 (603)
T KOG0318|consen 583 DE 584 (603)
T ss_pred cC
Confidence 75
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-48 Score=386.04 Aligned_cols=465 Identities=18% Similarity=0.233 Sum_probs=386.0
Q ss_pred CceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC----CcEEEEEEcCCCCCcEEEEEEeecCCCCCC
Q 003467 2 PIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS----GWHCQLTVHGDPKSRISSLVWCHAGKMGLP 77 (817)
Q Consensus 2 ~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~ 77 (817)
-+||.+| ..+|.|+.|||||+++|+|.. +.++||....... ++.+.+++.|| -..|+++.|+.|.++
T Consensus 89 Vlh~f~f----k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~-fddi~si~Ws~DSr~--- 159 (893)
T KOG0291|consen 89 VLHRFNF----KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGH-FDDITSIDWSDDSRL--- 159 (893)
T ss_pred eeEEEee----cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCC-ccceeEEEeccCCce---
Confidence 4567666 678999999999999999986 6799998764322 34455677777 789999999999998
Q ss_pred CceEEEeeCCCeEEEEECCCCeE--EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 78 GGRLFSSSIDGSVSEWDLYDLKQ--KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 78 ~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
|++++.|.++++|++...+- ...+.+|...|-..-|..+.
T Consensus 160 ---l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~----------------------------------- 201 (893)
T KOG0291|consen 160 ---LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS----------------------------------- 201 (893)
T ss_pred ---EEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc-----------------------------------
Confidence 99999999999999987665 57788999999999999887
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEecC-----------------------CCc-e---eE----eeccCCccc
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-----------------------SDE-L---IY----HRSLPRVSG 204 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------------------~~~-~---~~----~~~~~~h~~ 204 (817)
..+.+.+.||.+.+|.... +++ . .. ..-+.....
T Consensus 202 ---------------~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~ 266 (893)
T KOG0291|consen 202 ---------------LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS 266 (893)
T ss_pred ---------------ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence 4899999999999998861 111 0 00 011222346
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC-CCcEEEEeCC
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSR 282 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~-dg~i~iwd~~ 282 (817)
.|++.+|++..+.|++|-..|...+|.+..-.+++.+. -....|..++|+..| .|+.|+. -|.+.||+.+
T Consensus 267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS--------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS--------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee--------cccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 89999999999999999999999999999999999998 366789999999888 6776665 4899999999
Q ss_pred CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 283 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 283 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
+...+-..++|...+.+++++|||+++++|+.||.|++||..++- +..++..|+..|+++.|.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----------------C~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----------------CFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----------------EEEEeccCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999987 899999999999999997
Q ss_pred cccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeeccee
Q 003467 363 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 442 (817)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (817)
..++ .+++.+.||+|+.||+.....++.
T Consensus 402 ---------~~g~------------------------~llssSLDGtVRAwDlkRYrNfRT------------------- 429 (893)
T KOG0291|consen 402 ---------ARGN------------------------VLLSSSLDGTVRAWDLKRYRNFRT------------------- 429 (893)
T ss_pred ---------ecCC------------------------EEEEeecCCeEEeeeecccceeee-------------------
Confidence 5554 999999999999999986543322
Q ss_pred ecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEc--CCceEEEEee
Q 003467 443 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD--HVKPSLFELK 520 (817)
Q Consensus 443 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~--~~~i~l~~~~ 520 (817)
+..+......|++..|.|.++++|+ .-.|++|+++
T Consensus 430 -------------------------------------------ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 430 -------------------------------------------FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred -------------------------------------------ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 2222235577899999999988874 3678999998
Q ss_pred cCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEcc-CCceeeeeccCcccccccCCCCCCceeEE
Q 003467 521 KGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKM 599 (817)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 599 (817)
+ |..+ ..+.+|.++|.+++|+|+++.||+++.|.+|++||+- +...+.+++ +...++.+
T Consensus 467 T---Gqll-----DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~------------i~sdvl~v 526 (893)
T KOG0291|consen 467 T---GQLL-----DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE------------IRSDVLAV 526 (893)
T ss_pred c---Ceee-----ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe------------eccceeEE
Confidence 6 4443 5688999999999999999999999999999999984 334666777 57789999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCcceEEEEec-------------------CCCCCeEEEEecCCCCCeEEEEecCCe
Q 003467 600 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR-------------------LEGASVTAAGFPPQNNNVLIITTSSNQ 660 (817)
Q Consensus 600 ~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~-------------------~~~~~i~~l~~sp~d~~~l~~~~~d~~ 660 (817)
+|+|||+-||++..||.|.+||.+.+.....+.. ..+...+.+++++ ||..+++|+..+.
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNS 605 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCccc
Confidence 9999999999999999999999975544322111 1225789999999 9999999999999
Q ss_pred EEEEEcCCC
Q 003467 661 VYVFDVEAK 669 (817)
Q Consensus 661 i~vwd~~~~ 669 (817)
|++|++.++
T Consensus 606 iCiY~v~~~ 614 (893)
T KOG0291|consen 606 ICIYDVPEG 614 (893)
T ss_pred EEEEECchh
Confidence 999999776
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-49 Score=397.52 Aligned_cols=505 Identities=16% Similarity=0.257 Sum_probs=413.4
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
|.+||.-|+|+|.|..||+|+.||.|+|||+..+. |.+.+.|| .+.|.++.|.|+-.+ ..|++++.|++|+
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~----~th~fkG~-gGvVssl~F~~~~~~----~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY----CTHSFKGH-GGVVSSLLFHPHWNR----WLLASGATDGTVR 174 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE----EEEEecCC-CceEEEEEeCCccch----hheeecCCCceEE
Confidence 99999999999999999999999999999999876 89999998 799999999999876 7799999999999
Q ss_pred EEECCCCeE-EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 92 EWDLYDLKQ-KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 92 vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
+||+.+... +..+..|...|++++|++|+
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~-------------------------------------------------- 204 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDS-------------------------------------------------- 204 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCC--------------------------------------------------
Confidence 999996554 78888999999999999997
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-----CCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-----GNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
..++++|.|..+.|||+.+.+.+ +++. --..+-++.+-++ |.+++|++.+|.+++||.++++++.+.....
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l---~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~ 280 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKL---KTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD 280 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhh---heec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence 48999999999999999654444 3322 2235667777776 6799999999999999999999887766321
Q ss_pred CCCCCCCceeEEEeEEe-cCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEE-ecCCCEEEEEccCCcEEEEEe
Q 003467 246 GGLGSGPELCIWSLLSL-RCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA-APSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.+. +..+... .++.++....+..+.++|.++.+....+-+....|..++| .|+.++|++++..+.+++|+.
T Consensus 281 ------~~e-~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~ 353 (775)
T KOG0319|consen 281 ------SEE-IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL 353 (775)
T ss_pred ------chh-hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec
Confidence 111 4444443 4558888888999999999999999999999999999987 567799999999999999988
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.+.. ...+.+|+..|.++... ..| .+|+|
T Consensus 354 ~~~~------------------c~ii~GH~e~vlSL~~~---------~~g------------------------~llat 382 (775)
T KOG0319|consen 354 PTSY------------------CQIIPGHTEAVLSLDVW---------SSG------------------------DLLAT 382 (775)
T ss_pred CCCc------------------eEEEeCchhheeeeeec---------ccC------------------------cEEEE
Confidence 7765 34789999999999843 222 39999
Q ss_pred ecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeE-EE--EEeCCeEEEEEecccCCcccCCCCCCCCcc
Q 003467 404 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL-LL--VQYSCRLDILSVRLENNVESRSSSGGHAST 480 (817)
Q Consensus 404 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l--~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~ 480 (817)
|+.|.++++|.+++... ...+......+...+..++++..+- ++ ++.+..+++|.+...+.... ...
T Consensus 383 ~sKD~svilWr~~~~~~---~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~ 452 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCS---KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIV 452 (775)
T ss_pred ecCCceEEEEEecCCcc---hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cce
Confidence 99999999998844321 1112233345566666777765432 33 34445999999987332210 001
Q ss_pred ceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe
Q 003467 481 SLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 559 (817)
Q Consensus 481 ~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~ 559 (817)
.........|+..|.|++++|+.+++|++ .|.+.++|+++. .... ..+.+|...+.++.|+|..+.|++++
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---~~l~-----~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---LRLL-----GVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC---ceEE-----EEeeCCccceEEEEeccccceeEecc
Confidence 11122345677889999999999999995 679999999974 2221 67899999999999999999999999
Q ss_pred cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCe
Q 003467 560 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 560 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
.|++|+||.+++..++++|.+ |...|..+.|-.+|+.|++++.||-|++|++++..+...+. .|...|
T Consensus 525 gD~TvKIW~is~fSClkT~eG-----------H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~Drv 592 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEG-----------HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRV 592 (775)
T ss_pred CCceEEEEEeccceeeeeecC-----------ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hcccee
Confidence 999999999999999999999 99999999999999999999999999999999999988884 467899
Q ss_pred EEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 640 TAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
++++-+| ...++++|+.|+.|.+|.=.+
T Consensus 593 WaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 593 WALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 9999999 888999999999999996443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=376.88 Aligned_cols=467 Identities=16% Similarity=0.242 Sum_probs=392.9
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
...|+|+.-+||.-+||+|..||.|+||+..++. ...++.|| ..+|+++.|+..|.. |+|||.|+.|.+
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~----~~~tfngH-K~AVt~l~fd~~G~r------laSGskDt~IIv 133 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE----ILITFNGH-KAAVTTLKFDKIGTR------LASGSKDTDIIV 133 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCc----eeeeeccc-ccceEEEEEcccCce------EeecCCCccEEE
Confidence 3589999999999999999999999999999876 46788888 899999999999965 999999999999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
||+-...-+..+.+|...|+.+-|..+. ..
T Consensus 134 wDlV~E~Gl~rL~GHkd~iT~~~F~~~~--------------------------------------------------~~ 163 (888)
T KOG0306|consen 134 WDLVGEEGLFRLRGHKDSITQALFLNGD--------------------------------------------------SF 163 (888)
T ss_pred EEeccceeeEEeecchHHHhHHhccCCC--------------------------------------------------eE
Confidence 9999888899999999999999888744 38
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC------------------
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL------------------ 234 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~------------------ 234 (817)
+++.|.|+.|++||+.+.... .+.-.|.+.|+++++.+ +.+++++.|+.+++|++..
T Consensus 164 lvS~sKDs~iK~WdL~tqhCf---~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 164 LVSVSKDSMIKFWDLETQHCF---ETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EEEeccCceEEEEecccceee---eEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccce
Confidence 999999999999999877665 67778999999999987 7899999999999998710
Q ss_pred ------CceEEEEEe-----------------------------------------------------------------
Q 003467 235 ------GYEIYRITV----------------------------------------------------------------- 243 (817)
Q Consensus 235 ------g~~~~~~~~----------------------------------------------------------------- 243 (817)
|+.+.....
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 001000000
Q ss_pred ---------------------------------ec-CC-----------CCCCCceeEEEeEEecCCeEEEEcCCCcEEE
Q 003467 244 ---------------------------------GL-GG-----------LGSGPELCIWSLLSLRCGTLVSADSTGSVQF 278 (817)
Q Consensus 244 ---------------------------------~~-~~-----------~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~i 278 (817)
.. .. ...+|...|.+++++.+..++..+..+.+++
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Siki 398 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKI 398 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEE
Confidence 00 00 0236778888999999998777777889999
Q ss_pred EeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 279 WDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 279 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
|+..+.+++.++.. +.+.+..|-|.++++++|...|.+.+||+.+.. .+.+++.|.+.+..
T Consensus 399 Wn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-----------------l~Eti~AHdgaIWs 459 (888)
T KOG0306|consen 399 WNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS-----------------LVETIRAHDGAIWS 459 (888)
T ss_pred EEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh-----------------hhhhhhccccceee
Confidence 99999999999985 489999999999999999999999999999988 77888999999999
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeee
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 438 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (817)
++.+ ||++ .+++|+.|.+|++||..-......
T Consensus 460 i~~~---------pD~~------------------------g~vT~saDktVkfWdf~l~~~~~g--------------- 491 (888)
T KOG0306|consen 460 ISLS---------PDNK------------------------GFVTGSADKTVKFWDFKLVVSVPG--------------- 491 (888)
T ss_pred eeec---------CCCC------------------------ceEEecCCcEEEEEeEEEEeccCc---------------
Confidence 9998 8887 999999999999999864221000
Q ss_pred cceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEE
Q 003467 439 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLF 517 (817)
Q Consensus 439 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~ 517 (817)
..-++.. ...+-...-...+.|+++||||++||++ -++++++|
T Consensus 492 ----------------t~~k~ls--------------------l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 492 ----------------TQKKVLS--------------------LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ----------------ccceeee--------------------eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 0000000 0111112233779999999999999998 78999999
Q ss_pred EeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee
Q 003467 518 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
-++. .+.+ ..+.+|.-+|.+|..|||++.+++|+.|.+|+||-++-|.+-+.|-+ |...|.
T Consensus 536 flDt----lKFf----lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-----------HdDSvm 596 (888)
T KOG0306|consen 536 FLDT----LKFF----LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-----------HDDSVM 596 (888)
T ss_pred Eecc----eeee----eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc-----------ccCcee
Confidence 9975 2221 56788988999999999999999999999999999999999999988 999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 598 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 598 ~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
++.|-|....+.+++.|+.|+-||-+..+....+..++ ..|++++.+| +|.++++++.|..|++|.-...
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccch-heeeeeEEcC-CCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999999999999999888887655 6999999999 9999999999999999987653
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-46 Score=373.41 Aligned_cols=531 Identities=17% Similarity=0.204 Sum_probs=407.1
Q ss_pred CCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-CCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEE
Q 003467 23 ADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-DPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQK 101 (817)
Q Consensus 23 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 101 (817)
..|+++|+. ....|.+||+.+++. ...+.. .....|+|++-+|+... ||.|-.||.|++|++.++...
T Consensus 32 ~~Gr~va~~-a~E~vn~WdlRtge~----~~~l~~~~~k~evt~l~~~~d~l~------lAVGYaDGsVqif~~~s~~~~ 100 (888)
T KOG0306|consen 32 GKGRAVAVS-ALEQVNIWDLRTGEI----EKKLILLKKKAEVTCLRSSDDILL------LAVGYADGSVQIFSLESEEIL 100 (888)
T ss_pred CCCcEEEEe-ccccEeEEeeecchh----hhhhhhhcccceEEEeeccCCcce------EEEEecCceEEeeccCCCcee
Confidence 357777763 335699999999953 222221 21458999998898876 999999999999999999999
Q ss_pred EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc
Q 003467 102 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 181 (817)
Q Consensus 102 ~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 181 (817)
.++.+|...|+++.|...| .+|++|+.|+.
T Consensus 101 ~tfngHK~AVt~l~fd~~G--------------------------------------------------~rlaSGskDt~ 130 (888)
T KOG0306|consen 101 ITFNGHKAAVTTLKFDKIG--------------------------------------------------TRLASGSKDTD 130 (888)
T ss_pred eeecccccceEEEEEcccC--------------------------------------------------ceEeecCCCcc
Confidence 9999999999999999998 49999999999
Q ss_pred EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEE
Q 003467 182 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 261 (817)
Q Consensus 182 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (817)
|.+||+-....+ ..+.+|...|+..-|..+.++|++.|.|+.|++||+++..+..+.. .|.+.+|++++
T Consensus 131 IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv--------d~r~Eiw~l~~ 199 (888)
T KOG0306|consen 131 IIVWDLVGEEGL---FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV--------DHRGEIWALVL 199 (888)
T ss_pred EEEEEeccceee---EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe--------cccceEEEEEE
Confidence 999999855555 7899999999999999988999999999999999999999998887 79999999999
Q ss_pred ecCCeEEEEcCCCcEEEEeCCC-------C-----eEEEE-eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 262 LRCGTLVSADSTGSVQFWDSRH-------G-----TLLQA-HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 262 ~~~~~l~s~~~dg~i~iwd~~~-------~-----~~~~~-~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
.+ ..+++++.|+.+++|++.. . +...+ .+...+....++..++++++++-+.|..+.+|.+.+...
T Consensus 200 ~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E 278 (888)
T KOG0306|consen 200 DE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEE 278 (888)
T ss_pred ec-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHH
Confidence 88 6889999999999999821 0 01111 122334455666777778888888888887777654321
Q ss_pred ---------------CC---C-CCC--------------C----------------------CccccceEEE--------
Q 003467 329 ---------------GP---N-DGL--------------S----------------------SSEVIKKWIY-------- 345 (817)
Q Consensus 329 ---------------~~---~-~~~--------------~----------------------~~~~~~~~~~-------- 345 (817)
.. . .++ . ...+.-.|..
T Consensus 279 ~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 279 IAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred HHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 00 0 000 0 0000011111
Q ss_pred -------eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 346 -------VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 346 -------~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
...+.+|..+|++++++ .+. .++..+..+.+++|+..+.
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS---------~d~-------------------------~~~~Sga~~SikiWn~~t~ 404 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVS---------SDS-------------------------ILLASGAGESIKIWNRDTL 404 (888)
T ss_pred ccccccceeeeccchhheeEEEee---------cCc-------------------------eeeeecCCCcEEEEEccCc
Confidence 12345666667777665 332 5666666789999999987
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 496 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~ 496 (817)
+.++... ..-+.+..|-|..++++.+.. .+.++++.... .+..+ ..|+..|.+
T Consensus 405 kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~---------------l~Eti-~AHdgaIWs 459 (888)
T KOG0306|consen 405 KCIRTIT---------CGYILASKFVPGDRYIVLGTKNGELQVFDLASAS---------------LVETI-RAHDGAIWS 459 (888)
T ss_pred ceeEEec---------cccEEEEEecCCCceEEEeccCCceEEEEeehhh---------------hhhhh-hccccceee
Confidence 6544322 124456677787777765544 78888887554 23333 377889999
Q ss_pred EEecCCCcEEEE-EcCCceEEEEeecCCC----CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC
Q 003467 497 STISNSGMLFAY-SDHVKPSLFELKKGKV----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 497 ~~~s~~g~~la~-~~~~~i~l~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~ 571 (817)
++.+||++.+++ +.|.+|++|++..... ..+.+.+.....-.....|.|+.+||||++||++--|.+++||-+++
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc
Confidence 999999998777 5889999999875222 11222222222222234799999999999999999999999999999
Q ss_pred CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCe
Q 003467 572 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 651 (817)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 651 (817)
.+..-++.+ |.-+|.||.+|||++.+++|+.|.+|+||-++-|.++..+. +|...|.++.|.| ...+
T Consensus 540 lKFflsLYG-----------HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P-~~~~ 606 (888)
T KOG0306|consen 540 LKFFLSLYG-----------HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLP-KTHL 606 (888)
T ss_pred eeeeeeecc-----------cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcc-ccee
Confidence 999999999 99999999999999999999999999999999999998884 4668999999999 8899
Q ss_pred EEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcC
Q 003467 652 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 712 (817)
Q Consensus 652 l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~ 712 (817)
+.+++.|+.|+-||-+.-+. .+.+.+|...|++++.+|+|. +++.++
T Consensus 607 FFt~gKD~kvKqWDg~kFe~-----------iq~L~~H~~ev~cLav~~~G~---~vvs~s 653 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEE-----------IQKLDGHHSEVWCLAVSPNGS---FVVSSS 653 (888)
T ss_pred EEEecCcceEEeechhhhhh-----------heeeccchheeeeeEEcCCCC---eEEecc
Confidence 99999999999999988876 888999999999999999864 444433
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-44 Score=360.35 Aligned_cols=559 Identities=14% Similarity=0.173 Sum_probs=430.2
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
+....-..+.|++||..+.+--. +.|.++|+.+.+ ..+++-.....|++++.||+|.+ |++....|..
T Consensus 12 GTvyr~Gnl~ft~dG~sviSPvG-Nrvsv~dLknN~-----S~Tl~~e~~~NI~~ialSp~g~l------llavdE~g~~ 79 (893)
T KOG0291|consen 12 GTVYRAGNLVFTKDGNSVISPVG-NRVSVFDLKNNK-----SYTLPLETRYNITRIALSPDGTL------LLAVDERGRA 79 (893)
T ss_pred cceeecCcEEECCCCCEEEeccC-CEEEEEEccCCc-----ceeEEeecCCceEEEEeCCCceE------EEEEcCCCcE
Confidence 33344456899999999988654 679999998865 34444444679999999999998 9999999999
Q ss_pred EEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCC--CCCCccccccCCCCCCccccccccc
Q 003467 91 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSN--DSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.+-++.....++.+. ...+|.++.|||+|..++.+..+-..+ +-....+ ...+....+...|+...........
T Consensus 80 ~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~gn~lqi---w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~ 155 (893)
T KOG0291|consen 80 LLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCGNLLQI---WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD 155 (893)
T ss_pred EEEecccceeeEEEe-ecCccceEEECCCCcEEEEEecceeEE---EecCcchhcccCcceEeeeecCCccceeEEEecc
Confidence 999988877777665 568899999999998877665543221 1111111 2344555566777777788888889
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC--------------
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-------------- 234 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-------------- 234 (817)
+.+++++|+.|-.+++|++...+.+ ....+.+|++.|.++-|..+...+++.+.||.+.+|....
T Consensus 156 DSr~l~~gsrD~s~rl~~v~~~k~~-~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg 234 (893)
T KOG0291|consen 156 DSRLLVTGSRDLSARLFGVDGNKNL-FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEG 234 (893)
T ss_pred CCceEEeccccceEEEEEecccccc-ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccc
Confidence 9999999999999999999855442 3378899999999999999999999999999999998751
Q ss_pred ---------Cce-EEEEEeecC--CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEE
Q 003467 235 ---------GYE-IYRITVGLG--GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 301 (817)
Q Consensus 235 ---------g~~-~~~~~~~~~--~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 301 (817)
++. ..++..... .-.......|.+.+|++.. .|++|-+.|...+|++....+++.+.-....|..++
T Consensus 235 ~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~ 314 (893)
T KOG0291|consen 235 SDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVS 314 (893)
T ss_pred cccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEE
Confidence 111 000000000 0001233778899999877 688999999999999999999999998889999999
Q ss_pred EecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccccc
Q 003467 302 AAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 380 (817)
Q Consensus 302 ~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 380 (817)
|+..|.+|+.|+. -|.+.+|+..+.. ++...++|...+.+++++ |||+
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEs-----------------YVlKQQgH~~~i~~l~YS---------pDgq----- 363 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSES-----------------YVLKQQGHSDRITSLAYS---------PDGQ----- 363 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccc-----------------eeeeccccccceeeEEEC---------CCCc-----
Confidence 9999999999876 4899999999988 788889999999999998 9997
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEE
Q 003467 381 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~ 460 (817)
++++|+.||.|++||....-
T Consensus 364 -------------------~iaTG~eDgKVKvWn~~Sgf----------------------------------------- 383 (893)
T KOG0291|consen 364 -------------------LIATGAEDGKVKVWNTQSGF----------------------------------------- 383 (893)
T ss_pred -------------------EEEeccCCCcEEEEeccCce-----------------------------------------
Confidence 99999999999999987522
Q ss_pred EecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeeecCCcc
Q 003467 461 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRK 539 (817)
Q Consensus 461 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (817)
+.-....|...++.+.|+..|+.+.+ +-||+|+.|++.. ... .+..+.|..
T Consensus 384 ----------------------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR---YrN---fRTft~P~p 435 (893)
T KOG0291|consen 384 ----------------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR---YRN---FRTFTSPEP 435 (893)
T ss_pred ----------------------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc---cce---eeeecCCCc
Confidence 11112334577899999999998777 5789999999975 322 333333332
Q ss_pred ccceeEEEEecCCCEEEEEecCC-cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEE
Q 003467 540 LQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 618 (817)
Q Consensus 540 ~~~i~~~~fspd~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~ 618 (817)
. ...+++..|.|..+.+|+.|. .|+||++++|+++..+.+ |+++|.+++|+|+|..||+++.|.+|+
T Consensus 436 ~-QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-----------HEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 436 I-QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-----------HEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred e-eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-----------CCCcceeeEEccccCeEEeccccceEE
Confidence 2 467888888899999998876 799999999999999999 999999999999999999999999999
Q ss_pred EEECCCc-ceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccc---------cchhcccCccCcchhc
Q 003467 619 IFNLEIQ-RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG---------EWSMQHTFVLPRRYQE 688 (817)
Q Consensus 619 vwd~~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~---------~ws~~~~~~~~~~~~~ 688 (817)
+||+-.. ....++... ..+++++|+| ||+.|++++.||+|.+||++.+... .=.|...+.+..+-..
T Consensus 504 iW~if~s~~~vEtl~i~--sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 504 IWDIFSSSGTVETLEIR--SDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEeeccCceeeeEeec--cceeEEEEcC-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 9998544 334455443 4799999999 9999999999999999998755321 0111222333334444
Q ss_pred CCCceeEEEECCCCCCCEEEEEc-CceEEEEEcCC
Q 003467 689 FPGEVIGLSFSPSPSSSSVIIYS-ARAMCVIDFGR 722 (817)
Q Consensus 689 ~~~~v~~l~f~p~~~~~~~~~~~-~~~~~~~d~~~ 722 (817)
.....+.|.+++||+ .|+..| ++.+|++|...
T Consensus 581 ~~K~Ftti~ySaDG~--~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 581 KGKTFTTICYSADGK--CILAGGESNSICIYDVPE 613 (893)
T ss_pred cCCceEEEEEcCCCC--EEEecCCcccEEEEECch
Confidence 456799999999964 333333 34599998765
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-45 Score=343.15 Aligned_cols=283 Identities=22% Similarity=0.308 Sum_probs=266.2
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecC-CCCCCCceEEEeeCCCe
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAG-KMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~-~~~~~~~~l~s~~~d~~ 89 (817)
+-..+|..+.||+|++.||||+-+|.++||+..+.. ...++.|| ...|.++.|+|.. . .-|||++.||+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~----~~~~l~gH-~~~v~~~~fhP~~~~-----~~lat~s~Dgt 242 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN----LLQTLRGH-TSRVGAAVFHPVDSD-----LNLATASADGT 242 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc----eeEEEecc-ccceeeEEEccCCCc-----cceeeeccCCc
Confidence 446799999999999999999999999999999886 68899999 8999999999983 3 23999999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
|++|++++-.++..+.+|..+|..++|+|+|
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG------------------------------------------------- 273 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSG------------------------------------------------- 273 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCC-------------------------------------------------
Confidence 9999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
++|+++|.|.+-++||+.++.++ .-..||...|.+++|+|||.+++||+.|..-+|||+++|+++..+.
T Consensus 274 -~~L~TasfD~tWRlWD~~tk~El---L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------- 342 (459)
T KOG0272|consen 274 -KFLGTASFDSTWRLWDLETKSEL---LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------- 342 (459)
T ss_pred -ceeeecccccchhhcccccchhh---HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-------
Confidence 59999999999999999988887 6778999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeeccc
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+|...|.+|+|+|+| .+++|+.|++++|||++..+.+.++.+|..-|+.+.|+| .|.+|++++.|+++++|...+.+
T Consensus 343 -gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 343 -GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred -ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence 899999999999999 699999999999999999999999999999999999998 78899999999999999987766
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
+++++.+|...|.++.++ +++. .+++++.|
T Consensus 422 -----------------~~ksLaGHe~kV~s~Dis---------~d~~------------------------~i~t~s~D 451 (459)
T KOG0272|consen 422 -----------------PLKSLAGHEGKVISLDIS---------PDSQ------------------------AIATSSFD 451 (459)
T ss_pred -----------------cchhhcCCccceEEEEec---------cCCc------------------------eEEEeccC
Confidence 899999999999999998 8886 99999999
Q ss_pred CeEEEEe
Q 003467 408 TKLFAYC 414 (817)
Q Consensus 408 g~i~~~~ 414 (817)
.++++|.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 9999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-42 Score=343.01 Aligned_cols=518 Identities=18% Similarity=0.220 Sum_probs=373.4
Q ss_pred eeccCCCceEEEEECCCCCeEEEEe--cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAR--EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.+.-|..+++|+|||++|+|+|+|- ....++||++.... .+..+..| +..|+|++|+|.++| +++.|
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~----vVAEfvdH-KY~vtcvaFsp~~ky------vvSVG 141 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG----VVAEFVDH-KYNVTCVAFSPGNKY------VVSVG 141 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc----chhhhhhc-cccceeeeecCCCcE------EEeec
Confidence 3467788999999999999999984 67889999998766 46777777 789999999999999 99877
Q ss_pred C--CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc-ccC--------
Q 003467 86 I--DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS-ESE-------- 154 (817)
Q Consensus 86 ~--d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------- 154 (817)
. |-.|.+|||........- .....|..++|+.|+.+.+.++.+-- ...++.....-.++.++. ++.
T Consensus 142 sQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~gnrHv--k~wyl~~~~KykdpiPl~gRs~~lg~lr~n 218 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSGNRHV--KLWYLQIQSKYKDPIPLPGRSYFLGNLRFN 218 (1080)
T ss_pred cccceEEEhhhhhhccccccc-ccceeEEEEEEccCCceeeeeeeeeE--EEEEeeccccccCCccccchhhhccccccc
Confidence 5 567899998764433222 24678999999999988877655321 111111111111111110 000
Q ss_pred ------CCCCCc-----------------------------ccccccc-ccCCEEEEEeCCCcEEEEEecCCCceeEeec
Q 003467 155 ------NDSDSD-----------------------------ELHEQSV-VEDRRVALACDDGCVRIYRITDSDELIYHRS 198 (817)
Q Consensus 155 ------~~~~~~-----------------------------~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 198 (817)
-|.... .....|+ -+.+++++||.+|.|++|+..+-.- ..+
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y---~~T 295 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDY---AGT 295 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhh---ccc
Confidence 000000 0001111 2467999999999999998764321 122
Q ss_pred cCC-c-------------------c----ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCce
Q 003467 199 LPR-V-------------------S----GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL 254 (817)
Q Consensus 199 ~~~-h-------------------~----~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~ 254 (817)
+.. | . -...++.|++....|.....|..|.|||++.-..+.+... ...|..
T Consensus 296 lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s-----~lyHS~ 370 (1080)
T KOG1408|consen 296 LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS-----MLYHSA 370 (1080)
T ss_pred cccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee-----eeeccc
Confidence 211 1 0 1245788999999999999999999999986443332221 015999
Q ss_pred eEEEeEEec------------CCeEEEEcCCCcEEEEeCCCCeEEEEe--------------------------------
Q 003467 255 CIWSLLSLR------------CGTLVSADSTGSVQFWDSRHGTLLQAH-------------------------------- 290 (817)
Q Consensus 255 ~v~~v~~~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------- 290 (817)
+||.+...| .+-++++++|++|++||+..+.--+.+
T Consensus 371 ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk 450 (1080)
T KOG1408|consen 371 CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK 450 (1080)
T ss_pred eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence 999987655 346999999999999999853211110
Q ss_pred -----ecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeeccc
Q 003467 291 -----SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 365 (817)
Q Consensus 291 -----~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 365 (817)
-.....+.+++++|+|++|++|..-|.+++|++.... +......|...|.||.++.|.
T Consensus 451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-----------------~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 451 ALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-----------------YTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred cchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-----------------hhhheecccceeEEEeecCch
Confidence 0113468999999999999999999999999999877 677889999999999997322
Q ss_pred CCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC
Q 003467 366 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 445 (817)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 445 (817)
- +..+|++++.|..|.+||....-.
T Consensus 514 ~------------------------------~~kLLASasrdRlIHV~Dv~rny~------------------------- 538 (1080)
T KOG1408|consen 514 L------------------------------TNKLLASASRDRLIHVYDVKRNYD------------------------- 538 (1080)
T ss_pred h------------------------------hhHhhhhccCCceEEEEecccccc-------------------------
Confidence 1 224899999999999999865221
Q ss_pred CeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCC---cEEEEEcCCceEEEEeecC
Q 003467 446 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---MLFAYSDHVKPSLFELKKG 522 (817)
Q Consensus 446 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~la~~~~~~i~l~~~~~~ 522 (817)
+.+....|...|+++.|..+| ++|.+|.|..+ +|+....
T Consensus 539 -------------------------------------l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk 580 (1080)
T KOG1408|consen 539 -------------------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQK 580 (1080)
T ss_pred -------------------------------------hhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhcc
Confidence 111222334668888887776 34555555444 4444332
Q ss_pred CCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEc
Q 003467 523 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 602 (817)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 602 (817)
.....++.- .........+..|+..|..+++++++.|..|+||++++|+..+.|++.+. |++....+...
T Consensus 581 ~~~g~~f~r--~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--------~eG~lIKv~lD 650 (1080)
T KOG1408|consen 581 ASSGRLFPR--HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--------HEGDLIKVILD 650 (1080)
T ss_pred ccCceeccc--cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc--------CCCceEEEEEC
Confidence 222222211 11111223688999999999999999999999999999999999999766 88889999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 603 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 603 ~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
|.|.|||+...|.++.++|..++++.... ..|+..|+.+.|.+ |.+.|++++.||.|+||.+...
T Consensus 651 PSgiY~atScsdktl~~~Df~sgEcvA~m-~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 651 PSGIYLATSCSDKTLCFVDFVSGECVAQM-TGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred CCccEEEEeecCCceEEEEeccchhhhhh-cCcchheeeeeecc-cchhheeecCCceEEEEECchh
Confidence 99999999999999999999999988777 45778999999999 9999999999999999998653
No 14
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-40 Score=325.61 Aligned_cols=481 Identities=11% Similarity=0.155 Sum_probs=369.4
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.|-+.-++..|.++.|+|-..++.++-.+|.|+|||.++.. .++.+.-. +-+|++..|-+.-++ +++|+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt----mVksfeV~-~~PvRa~kfiaRknW------iv~Gs 74 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT----MVKSFEVS-EVPVRAAKFIARKNW------IVTGS 74 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce----eeeeeeec-ccchhhheeeeccce------EEEec
Confidence 34556689999999999999999999999999999999876 46666655 679999999999888 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
+|..|+|++.++++.+..+..|..-|.+++.+|..
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~--------------------------------------------- 109 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL--------------------------------------------- 109 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCC---------------------------------------------
Confidence 99999999999999999999999999999999988
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
++++++++|-.|++||.+. .....+++.+|+.-|.+++|+|. .+.++++|-|++|+||++....+..++.
T Consensus 110 -----P~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-- 180 (794)
T KOG0276|consen 110 -----PYVLTSSDDMTIKLWDWEN--EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-- 180 (794)
T ss_pred -----CeEEecCCccEEEEeeccC--ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee--
Confidence 5999999999999999963 44555899999999999999994 5689999999999999998888888888
Q ss_pred cCCCCCCCceeEEEeEEecCC---eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 245 LGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
+|+..|+++.|.+.| .|++|+.|.+|+|||.++.++++++.+|...|.++.|+|.-..+++|+.||++++|
T Consensus 181 ------gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 181 ------GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred ------ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 899999999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
+..+-+ +..++...-..|.+++.. +.+ ..+
T Consensus 255 hs~Ty~-----------------lE~tLn~gleRvW~I~~~---------k~~------------------------~~i 284 (794)
T KOG0276|consen 255 NSKTYK-----------------LEKTLNYGLERVWCIAAH---------KGD------------------------GKI 284 (794)
T ss_pred cCccee-----------------hhhhhhcCCceEEEEeec---------CCC------------------------CeE
Confidence 988766 445666666778888763 332 367
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccc
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 481 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~ 481 (817)
+.|..+|.+.+- +.. ..+.+..++.|+++....+.+.--++.+-.... ....|..-+-
T Consensus 285 ~vG~Deg~i~v~-lgr-------------------eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~--ev~DgErL~L 342 (794)
T KOG0276|consen 285 AVGFDEGSVTVK-LGR-------------------EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQK--EVTDGERLPL 342 (794)
T ss_pred EEeccCCcEEEE-ccC-------------------CCCceeecCCccEEEEcCceeeeeeceeccCcc--cccCCccccc
Confidence 888877777662 211 112455667787777766644433333221110 0111111010
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecC
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 561 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~d 561 (817)
.+.++- ..+-....++-||+|++++++.+|.-.+|..-. | + ....+......|++|.+..++-..+
T Consensus 343 svKeLg-s~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala-------~--R----nK~fG~~~eFvw~~dsne~avRes~ 408 (794)
T KOG0276|consen 343 SVKELG-SVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALA-------L--R----NKAFGSGLEFVWAADSNEFAVRESN 408 (794)
T ss_pred hhhhcc-ccccchHHhccCCCCcEEEEecCccEEEEEeee-------h--h----hcccccceeEEEcCCCCeEEEEecC
Confidence 011111 011234467899999999999999999986321 1 1 1233467788899998989988889
Q ss_pred CcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 562 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 562 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
+.|+++ .+.+..+++.. ....-. + -.|.+|... .++.+++||.+++.....+.. ....
T Consensus 409 ~~vki~--knfke~ksi~~------------~~~~e~--i-~gg~Llg~~-ss~~~~fydW~~~~lVrrI~v----~~k~ 466 (794)
T KOG0276|consen 409 GNVKIF--KNFKEHKSIRP------------DMSAEG--I-FGGPLLGVR-SSDFLCFYDWESGELVRRIEV----TSKH 466 (794)
T ss_pred CceEEE--ecceecccccc------------ccceee--e-cCCceEEEE-eCCeEEEEEcccceEEEEEee----ccce
Confidence 999999 67777777764 111111 1 134455554 455699999999998776643 3467
Q ss_pred EEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 642 AGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 642 l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
+.|+. +|.+++.++.|. .+++.+.
T Consensus 467 v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 467 VYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred eEEec-CCCEEEEEecCc-eeEEEec
Confidence 89997 877777776554 5665543
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-43 Score=328.21 Aligned_cols=282 Identities=19% Similarity=0.259 Sum_probs=259.2
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
..+|..+.||+|++. |+|||.+|.++||+..+...++++.+|...|.++.|+|..+.
T Consensus 175 ~rPis~~~fS~ds~~------laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~----------------- 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKH------LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD----------------- 231 (459)
T ss_pred CCcceeeEeecCCCe------EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-----------------
Confidence 689999999999988 999999999999999999999999999999999999998422
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 219 (817)
..+|+|+.||++++|++.+...+ ..+.+|..+|..++|+|+|++|+
T Consensus 232 -------------------------------~~lat~s~Dgtvklw~~~~e~~l---~~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 232 -------------------------------LNLATASADGTVKLWKLSQETPL---QDLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred -------------------------------cceeeeccCCceeeeccCCCcch---hhhhcchhhheeeeecCCCceee
Confidence 38999999999999999866666 89999999999999999999999
Q ss_pred EeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCee
Q 003467 220 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 298 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 298 (817)
|+|.|.+-++||+.++..+.... +|...|.+++|.+|| .+++|+.|..-+|||+++|+++-.+.+|...|.
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QE--------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQE--------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred ecccccchhhcccccchhhHhhc--------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee
Confidence 99999999999999998887666 899999999999999 788999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 378 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 378 (817)
.++|+|+|..|++|+.|++++|||++... .+
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-----------------~l-------------------------------- 380 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRS-----------------EL-------------------------------- 380 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccc-----------------cc--------------------------------
Confidence 99999999999999999999999987643 00
Q ss_pred ccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEE
Q 003467 379 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~ 458 (817)
T Consensus 381 -------------------------------------------------------------------------------- 380 (459)
T KOG0272|consen 381 -------------------------------------------------------------------------------- 380 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc
Q 003467 459 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR 538 (817)
Q Consensus 459 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
..++.
T Consensus 381 ---------------------------------------------------------------------------y~ipA 385 (459)
T KOG0272|consen 381 ---------------------------------------------------------------------------YTIPA 385 (459)
T ss_pred ---------------------------------------------------------------------------eeccc
Confidence 11344
Q ss_pred cccceeEEEEec-CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcE
Q 003467 539 KLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 617 (817)
Q Consensus 539 ~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 617 (817)
|..-|+.+.|+| .|.+|++++.|++++||...++.+++++.+ |++.|.++++|+|++++++++.|.++
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-----------He~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-----------HEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-----------CccceEEEEeccCCceEEEeccCcee
Confidence 555677788888 788999999999999999999999999999 99999999999999999999999999
Q ss_pred EEEE
Q 003467 618 YIFN 621 (817)
Q Consensus 618 ~vwd 621 (817)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-41 Score=300.16 Aligned_cols=286 Identities=18% Similarity=0.256 Sum_probs=264.0
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
-|-+.+|-+.|.++.|++|+++|++++.||.+.|||..+... ++.++-. ...|..+||+|.|++ +|+||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK----~haipl~-s~WVMtCA~sPSg~~------VAcGG 116 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK----VHAIPLP-SSWVMTCAYSPSGNF------VACGG 116 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc----eeEEecC-ceeEEEEEECCCCCe------EEecC
Confidence 367899999999999999999999999999999999988763 5555554 689999999999998 99999
Q ss_pred CCCeEEEEECCCC------eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 86 IDGSVSEWDLYDL------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 86 ~d~~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
.|+...||++.+. +..+.+.+|.+-+.|+.|-+|+
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------------------------------- 157 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------------------------------- 157 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC---------------------------------------
Confidence 9999999999865 4557799999999999999987
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceE
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
.|++++.|.++.+||++++... ..|.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.
T Consensus 158 ------------~ilT~SGD~TCalWDie~g~~~---~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 158 ------------HILTGSGDMTCALWDIETGQQT---QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV 222 (343)
T ss_pred ------------ceEecCCCceEEEEEcccceEE---EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence 8999999999999999988877 88999999999999999 9999999999999999999999999
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
+.+. +|+..|+++.|.|+| -|++|+.|++.++||++..+.+..+.. -...|++++||..|++|++|..|
T Consensus 223 qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 223 QTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred Eeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 9998 899999999999999 699999999999999999988888763 23679999999999999999999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
..+.+||.-.++ .+..+.+|.+.|.+|..+ |||.
T Consensus 295 ~~c~vWDtlk~e-----------------~vg~L~GHeNRvScl~~s---------~DG~-------------------- 328 (343)
T KOG0286|consen 295 FTCNVWDTLKGE-----------------RVGVLAGHENRVSCLGVS---------PDGM-------------------- 328 (343)
T ss_pred CceeEeeccccc-----------------eEEEeeccCCeeEEEEEC---------CCCc--------------------
Confidence 999999998887 788999999999999998 8987
Q ss_pred CCCcEEEEecCCCeEEEEe
Q 003467 396 LGVPMLISAGDDTKLFAYC 414 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~ 414 (817)
.+++|+.|..+++|.
T Consensus 329 ----av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 ----AVATGSWDSTLRIWA 343 (343)
T ss_pred ----EEEecchhHheeecC
Confidence 999999999999994
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=288.97 Aligned_cols=290 Identities=19% Similarity=0.243 Sum_probs=257.7
Q ss_pred EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC
Q 003467 100 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 179 (817)
Q Consensus 100 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 179 (817)
..+++++|.+.|.++.|++|+ +++++++.|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Ds--------------------------------------------------r~ivSaSqD 76 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDS--------------------------------------------------RRIVSASQD 76 (343)
T ss_pred eEEEecccccceeeeEecCCc--------------------------------------------------CeEEeeccC
Confidence 358899999999999999999 599999999
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC--c----eEEEEEeecCCCCCCCc
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--Y----EIYRITVGLGGLGSGPE 253 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g--~----~~~~~~~~~~~~~~~~~ 253 (817)
|.+.|||.-+.... ..++-....|..++|+|.|+++|.|+-|+...||++.+. + ..+.+. +|.
T Consensus 77 GklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~--------gHt 145 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA--------GHT 145 (343)
T ss_pred CeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec--------Ccc
Confidence 99999999876665 555666789999999999999999999999999999854 2 222333 799
Q ss_pred eeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeecccCCCCC
Q 003467 254 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPND 332 (817)
Q Consensus 254 ~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 332 (817)
..+.++.|.+|+.|++++.|.+..+||+++|+.+..|.+|.++|.+++++| +++.+++|+.|+..++||++.+.
T Consensus 146 gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~----- 220 (343)
T KOG0286|consen 146 GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ----- 220 (343)
T ss_pred ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-----
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred CCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 003467 333 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 412 (817)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~ 412 (817)
++.++.+|..+|+++.|. |+|. -+++|+.|++.++
T Consensus 221 ------------c~qtF~ghesDINsv~ff---------P~G~------------------------afatGSDD~tcRl 255 (343)
T KOG0286|consen 221 ------------CVQTFEGHESDINSVRFF---------PSGD------------------------AFATGSDDATCRL 255 (343)
T ss_pred ------------eeEeecccccccceEEEc---------cCCC------------------------eeeecCCCceeEE
Confidence 899999999999999998 8875 8999999999999
Q ss_pred EeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCC
Q 003467 413 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR 492 (817)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 492 (817)
||++....
T Consensus 256 yDlRaD~~------------------------------------------------------------------------ 263 (343)
T KOG0286|consen 256 YDLRADQE------------------------------------------------------------------------ 263 (343)
T ss_pred EeecCCcE------------------------------------------------------------------------
Confidence 99975220
Q ss_pred CeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCC
Q 003467 493 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS 572 (817)
Q Consensus 493 ~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~ 572 (817)
+.+|. -.....+|++++||..|++|.+|..|.++.+||.-.+
T Consensus 264 ---------------------~a~ys-----------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 264 ---------------------LAVYS-----------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ---------------------Eeeec-----------------cCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 00111 0111227999999999999999999999999999999
Q ss_pred ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 573 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
+.+..+.+ |+..|+++..+|||.-+++|+.|.+++||.
T Consensus 306 e~vg~L~G-----------HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 ERVGVLAG-----------HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceEEEeec-----------cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999 999999999999999999999999999994
No 18
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-37 Score=309.00 Aligned_cols=610 Identities=17% Similarity=0.179 Sum_probs=389.0
Q ss_pred eeeeccCCCceEEEEECCCCC---eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 6 NSSIDWKPSPVVALATSADDS---QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
.-.+++|..+|+|+.+-|+.+ ++++|+.||.|.+|.+.. ..+.+..++++| .+.++++...-.. ..
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~--~~~~~i~~~~g~---~~~~~cv~a~~~~------~~ 115 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD--EYLIKIYTIQGH---CKECVCVVARSSV------MT 115 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEee--hheEEEEeecCc---ceeEEEEEeeeeE------EE
Confidence 345689999999999999887 899999999999999983 235677888885 4566666655432 44
Q ss_pred EeeCCCeEEEEECCCCe--EEEEEeecCce--EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 83 SSSIDGSVSEWDLYDLK--QKIVLQSIDFS--IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+.+.|+++.+||.+..+ +...+.-.... -.|+++.++....+.+...... ...+...+ .+.........|+.
T Consensus 116 ~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~--~v~~~s~~--~d~f~~v~el~GH~ 191 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF--VVDLYSSS--ADSFARVAELEGHT 191 (764)
T ss_pred eeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce--EEEEeccC--CcceeEEEEeeccc
Confidence 44789999999996555 22222222222 2355666633332222222211 11111111 11111122222332
Q ss_pred Ccccccccc---ccCCEEEEEeCCCcEEEEEecCCC------------------------cee----EeeccCCccceEE
Q 003467 159 SDELHEQSV---VEDRRVALACDDGCVRIYRITDSD------------------------ELI----YHRSLPRVSGRVL 207 (817)
Q Consensus 159 ~~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~------------------------~~~----~~~~~~~h~~~v~ 207 (817)
.-....... .+.-+||+++.|..||||.+.-+. .+. +...+.||++.|.
T Consensus 192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~ 271 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY 271 (764)
T ss_pred hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence 222221111 233489999999999999987322 111 1123459999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCc--eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC-
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH- 283 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~- 283 (817)
++.|+|++..|++++.|.++.+|...+.. -+..+..+ ... +.....+...|+|++ .+++-+..|..++|..+.
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG--e~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG--EVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEee--ccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 99999999999999999999999876543 33333332 211 456678999999999 678888899999998332
Q ss_pred --CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEe
Q 003467 284 --GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 361 (817)
Q Consensus 284 --~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 361 (817)
..+...+.+|...|..++|+|.|.+|++.|.|.+-++|-.-..+ ..|..+..-+.|.+++.|+++
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-------------~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-------------QEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccc-------------cceeeecccccccccceeeeh
Confidence 23455678999999999999999999999999999999766332 348889999999999999999
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc-----ccCCcccCCCCCCCcee
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-----KFSPHEICPAPQRVPIH 436 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 436 (817)
- +.. -.+++|..+..+++|+....- .+...........+...
T Consensus 416 v---------n~~------------------------~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA 462 (764)
T KOG1063|consen 416 V---------NED------------------------LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGA 462 (764)
T ss_pred c---------cCC------------------------ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccc
Confidence 5 322 279999999999999876311 00000000000011111
Q ss_pred eecceeecCCeEEE-EEeCC-eEEEE-EecccCCcccCCCCCCCCccceee--------eeeecCCCCeEEEEecCCCcE
Q 003467 437 LVHNTIFSHTSLLL-VQYSC-RLDIL-SVRLENNVESRSSSGGHASTSLLV--------QVKSKASRKIICSTISNSGML 505 (817)
Q Consensus 437 ~~~~~~~s~~~~~l-~~~~~-~i~i~-~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~i~~~~~s~~g~~ 505 (817)
.+..+.+|.+-.+. .+..+ .-..| ........ ...........+. +-..+|...|.+++.+|+|++
T Consensus 463 ~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p---~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 463 NVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP---CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL 539 (764)
T ss_pred ccccccccCCCCcccccccccccceeeecccccCc---hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence 22222222211110 11111 00001 10000000 0000000000111 112456788999999999999
Q ss_pred EEEEc------CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCc-eeeee
Q 003467 506 FAYSD------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTF 578 (817)
Q Consensus 506 la~~~------~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~-~~~~~ 578 (817)
+|++. ...|++|+... |.. ...+..|.-.|+.++|||||++|++++.|.++.+|...... .-..|
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~-------W~~-~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTAN-------WLQ-VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred EeehhhhCCccceEEEEEeccc-------hhh-hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh
Confidence 99952 24578887654 211 14688898899999999999999999999999999985332 11222
Q ss_pred ccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCc--ceEEE-EecCCCCCeEEEEecCCC----CCe
Q 003467 579 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWF-ISRLEGASVTAAGFPPQN----NNV 651 (817)
Q Consensus 579 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~--~~~~~-~~~~~~~~i~~l~~sp~d----~~~ 651 (817)
.. ...|..-|.+..|+||+.++|+++.|..|+||..... +.... ....++..|++++|.|.+ +..
T Consensus 612 a~--------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~ 683 (764)
T KOG1063|consen 612 AC--------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDV 683 (764)
T ss_pred cc--------ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccce
Confidence 21 2339999999999999999999999999999999877 32222 112245799999999833 337
Q ss_pred EEEEecCCeEEEEEcCCCc-cccchhcccCcc---CcchhcCCCceeEEEECCC
Q 003467 652 LIITTSSNQVYVFDVEAKQ-LGEWSMQHTFVL---PRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 652 l~~~~~d~~i~vwd~~~~~-~~~ws~~~~~~~---~~~~~~~~~~v~~l~f~p~ 701 (817)
+++|...|.|.+|...... ... ...+.+ ......|.+.|..+.|+|.
T Consensus 684 vavGle~GeI~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 684 VAVGLEKGEIVLWRRKREHRQVT---VGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred EEEEecccEEEEEeccccccccc---ceeeeeccccccccChHHhhheeEeccc
Confidence 8999999999999965211 000 011112 2335566788999999985
No 19
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=307.76 Aligned_cols=531 Identities=15% Similarity=0.181 Sum_probs=399.7
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
.-+|..|+|+|-..+--|.|.| ..|.+|-.. + +...++.+| .+.|.-+. +-|.+ |+++..++.
T Consensus 73 ~~lp~~I~alas~~~~vy~A~g---~~i~~~~rg--k---~i~~~~~~~-~a~v~~l~--~fGe~------lia~d~~~~ 135 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYVYVASG---NKIYAYARG--K---HIRHTTLLH-GAKVHLLL--PFGEH------LIAVDISNI 135 (910)
T ss_pred CCCCCceEEEEecCceEEEecC---cEEEEEEcc--c---eEEEEeccc-cceEEEEe--eecce------EEEEEccCc
Confidence 3789999999987555444443 347777543 2 246666676 46777654 55666 999999999
Q ss_pred EEEEECCCC-eE----EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 90 VSEWDLYDL-KQ----KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 90 i~vwd~~~~-~~----~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+.+|+..++ +. ...++.....|.++ ++|+- ++
T Consensus 136 l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~T-YL----------------------------------------- 172 (910)
T KOG1539|consen 136 LFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPST-YL----------------------------------------- 172 (910)
T ss_pred EEEEEeccccccccccceeeeccCCceeeE-ecchh-he-----------------------------------------
Confidence 999998884 21 12222222335554 34443 22
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
+.++.|+.+|.+.||++.+++.+ .+++++...|+++.=+|-=+.++.|..+|+|.++|++.++.+.++.
T Consensus 173 ------NKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-- 241 (910)
T KOG1539|consen 173 ------NKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-- 241 (910)
T ss_pred ------eeEEEeecCCcEEEEEeccCcEE---EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--
Confidence 58999999999999999988887 8899999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEee-cCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 245 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
...+.|.+++|..|| .+++|+..|.+.+||++..+++.... .|.+.|..+.|-|....+++++.|+.+++|
T Consensus 242 ------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 242 ------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred ------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 235899999999999 69999999999999999888776665 788999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
-.+++.... .+++...+|+.+-.++.+.- . .+..+
T Consensus 316 vfD~~dg~p-------------R~LR~R~GHs~Pp~~irfy~--------~------------------------~g~~i 350 (910)
T KOG1539|consen 316 VFDSGDGVP-------------RLLRSRGGHSAPPSCIRFYG--------S------------------------QGHFI 350 (910)
T ss_pred EeeCCCCcc-------------hheeeccCCCCCchheeeec--------c------------------------CcEEE
Confidence 888655221 16788899999999999850 1 23489
Q ss_pred EEecCCCeEEEEeCCcccccCCc----------ccCCC-CCCCceeeecceeecCCe-----EEEEEeCC--eEEEEEec
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPH----------EICPA-PQRVPIHLVHNTIFSHTS-----LLLVQYSC--RLDILSVR 463 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~s~~~-----~~l~~~~~--~i~i~~~~ 463 (817)
.+++.|++++.+++.....-+.. +.... +.......+...++.... ..+++.-+ ....|++.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 99999999999887542211110 00000 111112233333333321 23333333 66677766
Q ss_pred ccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccc
Q 003467 464 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQF 542 (817)
Q Consensus 464 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (817)
...... + .+...-..+....+++++++++|++...| +.|.|-+|+++. +... -.-..-+.|..+
T Consensus 431 n~~~G~-------~---~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS---Gi~r--~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 431 NKTSGR-------H---VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS---GIHR--KSFGDSPAHKGE 495 (910)
T ss_pred Cccccc-------E---EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc---Ceee--cccccCccccCc
Confidence 443210 0 00000011144679999999999998887 669999999987 3321 111234678889
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 543 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 543 i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
|+.++...-++.+++++.+|.+.+||+....++..+. -...++++..+.....+|.+..|-.|.++|.
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~------------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR------------LGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeec------------cCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 9999998889999999999999999999888888888 4778999999999999999999999999999
Q ss_pred CCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCC
Q 003467 623 EIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSP 702 (817)
Q Consensus 623 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~ 702 (817)
.+.+....+ ..|+..|++++||| ||++|++++.|++|++||+.++.+-+ ....+.+++.++|+|.|
T Consensus 564 ~t~kvvR~f-~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID------------~~~vd~~~~sls~SPng 629 (910)
T KOG1539|consen 564 VTRKVVREF-WGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLID------------GLLVDSPCTSLSFSPNG 629 (910)
T ss_pred hhhhhhHHh-hccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceee------------eEecCCcceeeEECCCC
Confidence 998877666 44778999999999 99999999999999999999998722 33456899999999976
Q ss_pred C
Q 003467 703 S 703 (817)
Q Consensus 703 ~ 703 (817)
.
T Consensus 630 D 630 (910)
T KOG1539|consen 630 D 630 (910)
T ss_pred C
Confidence 5
No 20
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1e-36 Score=291.66 Aligned_cols=508 Identities=15% Similarity=0.189 Sum_probs=372.4
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCC--------cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCC
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDG--------SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMG 75 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg--------~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~ 75 (817)
|.+|++-+|...|.||+++||.-++|+|...| .|+|||..+-.. ...+. .....|.|++||+-..-
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T----L~V~g-~f~~GV~~vaFsk~~~G- 168 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST----LHVIG-FFDRGVTCVAFSKINGG- 168 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee----eeeec-cccccceeeeecccCCC-
Confidence 67899999999999999999999999885544 599999776552 33443 44789999999986432
Q ss_pred CCCceEEEe--eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 76 LPGGRLFSS--SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 76 ~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
..|+.. +.+..+.|||++.+............|....|+|...
T Consensus 169 ---~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-------------------------------- 213 (626)
T KOG2106|consen 169 ---SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-------------------------------- 213 (626)
T ss_pred ---ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC--------------------------------
Confidence 224443 4466799999999988888888888999999999884
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
.+.+.+..|.+..|+.+.+...+....+.+++ ..|.|++|.++|+ ++||.++|.|.||+.
T Consensus 214 ------------------nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 214 ------------------NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred ------------------cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 56666677999999998665554444555443 5799999999986 679999999999999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEE
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~ 310 (817)
.+.+..+... .|.+.|.+++...+|+|++|+.|..|..||-. -+.++. +....+.|..++=...+ |+
T Consensus 275 ~~~~~~k~~~--------aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d--i~ 343 (626)
T KOG2106|consen 275 GTNRISKQVH--------AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGD--IL 343 (626)
T ss_pred CCceEEeEee--------ecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCc--EE
Confidence 7777666665 59999999999999999999999999999944 232322 33445677777654333 88
Q ss_pred EEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccc
Q 003467 311 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 390 (817)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (817)
+|...+.|..=.+..+- .....+|......++.. |+.
T Consensus 344 vGTtrN~iL~Gt~~~~f------------------~~~v~gh~delwgla~h---------ps~---------------- 380 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGF------------------TLTVQGHGDELWGLATH---------PSK---------------- 380 (626)
T ss_pred EeeccceEEEeeecCCc------------------eEEEEecccceeeEEcC---------CCh----------------
Confidence 88777777666665543 34567888888888886 544
Q ss_pred cccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCccc
Q 003467 391 HKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES 470 (817)
Q Consensus 391 ~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~ 470 (817)
+.+++++.|+.+++|+-.. . .-.......+.++.|.|.| .++.+.......-++..+
T Consensus 381 --------~q~~T~gqdk~v~lW~~~k-~---------~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~---- 437 (626)
T KOG2106|consen 381 --------NQLLTCGQDKHVRLWNDHK-L---------EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET---- 437 (626)
T ss_pred --------hheeeccCcceEEEccCCc-e---------eEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc----
Confidence 4999999999999999221 1 1111223455688899999 666555544433333332
Q ss_pred CCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEe
Q 003467 471 RSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 549 (817)
Q Consensus 471 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs 549 (817)
+.+.++... ..++.+++++|+|.+||++ .|+.|++|.++. .+.+.-.+ ....+ .+|+.+.||
T Consensus 438 ----------~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~--~g~~y~r~--~k~~g--s~ithLDwS 500 (626)
T KOG2106|consen 438 ----------QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA--NGRKYSRV--GKCSG--SPITHLDWS 500 (626)
T ss_pred ----------ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC--CCcEEEEe--eeecC--ceeEEeeec
Confidence 235555555 7889999999999999996 679999999986 33333222 22233 689999999
Q ss_pred cCCCEEEEEecCCcEEEEEccCCceeeeeccCccc-------ccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 550 YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE-------HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 550 pd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
+|+++|.+-+-|-.|..|...........+..... .......+...|..++-|.+.++||+|+..|.|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999999999999954332222221110000 00011336777888889999999999999999999986
Q ss_pred CCcceE--EEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 623 EIQRQH--WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 623 ~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
.--+.. ......|++.|++++|.. +...|++.+.|..|..|++
T Consensus 581 Pc~s~rA~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccceeeccccceeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 433222 223355778999999999 7778888889999999987
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-37 Score=310.33 Aligned_cols=529 Identities=18% Similarity=0.173 Sum_probs=385.3
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
..++..|.+.|.-+.. =|.+|..+..++.+.||+....+...+...++.......|+++ ++|..-+ +.++.|+
T Consensus 107 ~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYL----NKIvvGs 179 (910)
T KOG1539|consen 107 RHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYL----NKIVVGS 179 (910)
T ss_pred EEEeccccceEEEEee--ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhhe----eeEEEee
Confidence 3445666666666543 3788888889999999999885322122233333223338887 5666544 6699999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.+|.+.+||+.+++.+.++..+...|+++.-+|--
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL--------------------------------------------- 214 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL--------------------------------------------- 214 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------------------------------
Confidence 99999999999999999999999999999988876
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCE-EEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
..+|+|..+|+|.|+++..++.+ .+++...++|++++|.-||.. +++|+..|.+.+||++..+.+..+..
T Consensus 215 -----DVVaiG~~~G~ViifNlK~dkil---~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n- 285 (910)
T KOG1539|consen 215 -----DVVAIGLENGTVIIFNLKFDKIL---MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN- 285 (910)
T ss_pred -----eEEEEeccCceEEEEEcccCcEE---EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-
Confidence 48999999999999999988877 666655699999999999975 56777789999999998877777664
Q ss_pred cCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC--CC--eEEEEeecCccCeeEEEEe-cCCCEEEEEccCCcE
Q 003467 245 LGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HG--TLLQAHSFHKGDVNALAAA-PSHNRVFSTGSDGQV 318 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~--~~--~~~~~~~~h~~~v~~l~~s-~~~~~l~~~~~dg~i 318 (817)
.|.+.|....|.+.. .+++++.|..+++|=.. .| +.++.-.+|..+..|+.|. .+|..+.+++.|++.
T Consensus 286 ------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 286 ------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred ------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 588889999999888 78999999998888544 34 5567778999999999998 688999999999999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEee-ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCC
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 397 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (817)
+.+++.........+........+-.-+. .....-.+|..+++. ..+ + ..-
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~----------~~R-------E-----------~~W 411 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE----------NAR-------E-----------KEW 411 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc----------cch-------h-----------hhh
Confidence 99987655421110000000000000000 111112233344331 000 0 001
Q ss_pred CcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE--eCCeEEEEEecccCCcccCCCCC
Q 003467 398 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ--YSCRLDILSVRLENNVESRSSSG 475 (817)
Q Consensus 398 ~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~~i~i~~~~~~~~~~~~~~~~ 475 (817)
.+.+...-.+...+.|+..+...- .+...+.+.......+.+++.++-|.+.+. ..+.|+++++..+-...
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~------ 484 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK------ 484 (910)
T ss_pred cceeEEecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec------
Confidence 235666666778999999875431 122222333334456667778887776554 45589999987654221
Q ss_pred CCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCE
Q 003467 476 GHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 554 (817)
Q Consensus 476 g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~ 554 (817)
-..-...+...++.++...-++.+++ +.+|.++.|++.. ... +....+ ...+.++..+.....
T Consensus 485 -------sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~---k~l---~~~l~l---~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 485 -------SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK---KVL---KKSLRL---GSSITGIVYHRVSDL 548 (910)
T ss_pred -------ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC---cce---eeeecc---CCCcceeeeeehhhh
Confidence 00012345678999999888887666 6889999999875 111 111222 226888899999999
Q ss_pred EEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecC
Q 003467 555 LIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 555 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~ 634 (817)
++++..|-.|.++|..+.+.++.|.+ |...|++++|||||+||++++.|++|++||+.++.+.-.+..
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v- 616 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV- 616 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhc-----------cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-
Confidence 99999999999999999999999999 999999999999999999999999999999999998766643
Q ss_pred CCCCeEEEEecCCCCCeEEEEecC-CeEEEEEc
Q 003467 635 EGASVTAAGFPPQNNNVLIITTSS-NQVYVFDV 666 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~~~l~~~~~d-~~i~vwd~ 666 (817)
..+.+++.|+| ++++||++..| +-|++|.=
T Consensus 617 -d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 -DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred -CCcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 25899999999 99999999998 57999953
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.7e-38 Score=297.67 Aligned_cols=333 Identities=20% Similarity=0.270 Sum_probs=282.1
Q ss_pred CCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC--CeEEE--EE------ee----cCceEEEEeeecCCCccc
Q 003467 59 PKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD--LKQKI--VL------QS----IDFSIWQMAVAPSNSSLM 124 (817)
Q Consensus 59 ~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~--~~------~~----~~~~i~~~~~s~~~~~~~ 124 (817)
|+..|.+.+|.|-.. ..|++++.|.+.++|++.. ..... .+ .+ ....|++++|+.+|
T Consensus 177 ~~~~V~~~~WnP~~~-----~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G---- 247 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD-----GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG---- 247 (524)
T ss_pred CCCceEEEecCchhh-----hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC----
Confidence 388999999999876 2399999999999999874 11111 01 11 23579999999999
Q ss_pred eeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc
Q 003467 125 HAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG 204 (817)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 204 (817)
..||+|+.||.++||+.. +..+ .+|..|++
T Consensus 248 ----------------------------------------------~~LatG~~~G~~riw~~~-G~l~---~tl~~Hkg 277 (524)
T KOG0273|consen 248 ----------------------------------------------TLLATGSEDGEARIWNKD-GNLI---STLGQHKG 277 (524)
T ss_pred ----------------------------------------------CeEEEeecCcEEEEEecC-chhh---hhhhccCC
Confidence 599999999999999986 5555 88999999
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCC
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (817)
+|.++.|+.+|.+|++++.|+++.+||..+|...+.+. -|+.+-..+.|-.+..+++.+.||.|+++.+...
T Consensus 278 PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~--------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE--------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee--------eccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence 99999999999999999999999999999999999988 4777777889999999999999999999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
+++.++.+|.+.|.++.|+|.|..|++++.|+++++|+..... ....++.|+..|..+.++
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----------------~~~~l~~Hskei~t~~ws-- 410 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-----------------SVHDLQAHSKEIYTIKWS-- 410 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-----------------chhhhhhhccceeeEeec--
Confidence 9999999999999999999999999999999999999988776 678899999999999998
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
|.+.+ .|.+..+..+++++.|++|++||+..
T Consensus 411 -------p~g~v---------------~~n~~~~~~l~sas~dstV~lwdv~~--------------------------- 441 (524)
T KOG0273|consen 411 -------PTGPV---------------TSNPNMNLMLASASFDSTVKLWDVES--------------------------- 441 (524)
T ss_pred -------CCCCc---------------cCCCcCCceEEEeecCCeEEEEEccC---------------------------
Confidence 66641 12222334566666666666665542
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCC
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV 524 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~ 524 (817)
T Consensus 442 -------------------------------------------------------------------------------- 441 (524)
T KOG0273|consen 442 -------------------------------------------------------------------------------- 441 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccC
Q 003467 525 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 604 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 604 (817)
+.++ ..+..|..+|.+++|||+|++||+|+.||.|.+|+..++++.++..+ .+.|..++|+.+
T Consensus 442 gv~i-----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~------------~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 442 GVPI-----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG------------TGGIFELCWNAA 504 (524)
T ss_pred Ccee-----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC------------CCeEEEEEEcCC
Confidence 2332 33567777999999999999999999999999999999999999996 777999999999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 003467 605 GQWLAAVNCFGDVYIFNLE 623 (817)
Q Consensus 605 g~~la~~~~dg~i~vwd~~ 623 (817)
|.+|..+-.||.+++.|+.
T Consensus 505 G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 505 GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCEEEEEecCCCceEEEec
Confidence 9999999999999999874
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4e-37 Score=306.05 Aligned_cols=550 Identities=13% Similarity=0.127 Sum_probs=370.7
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee--CCCeEEEEE
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS--IDGSVSEWD 94 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~--~d~~i~vwd 94 (817)
.+||.+|-..++|-- ....|.++|+...+ +-+.+..+ ...++++|||++|+| +++|- ....++||+
T Consensus 41 ~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~t----Q~hlvnss-Rk~~t~vAfS~~Gry------vatGEcG~~pa~kVw~ 108 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYP-AGCVVVLFNVDSCT----QSHLVNSS-RKPLTCVAFSQNGRY------VATGECGRTPASKVWS 108 (1080)
T ss_pred Ccccccccccceeec-cCcEEEEEcccccc----hhheeccc-CcceeEEEEcCCCcE------EEecccCCCccceeee
Confidence 456667766655542 33578889998765 23333444 679999999999998 99864 667899999
Q ss_pred CCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 95 LYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
+.....+..+..|...|.|++|+|.+. +++
T Consensus 109 la~h~vVAEfvdHKY~vtcvaFsp~~k--------------------------------------------------yvv 138 (1080)
T KOG1408|consen 109 LAFHGVVAEFVDHKYNVTCVAFSPGNK--------------------------------------------------YVV 138 (1080)
T ss_pred eccccchhhhhhccccceeeeecCCCc--------------------------------------------------EEE
Confidence 999999999999999999999999984 566
Q ss_pred EEeC--CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC------
Q 003467 175 LACD--DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG------ 246 (817)
Q Consensus 175 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~------ 246 (817)
+.+. |-.|.+||...+-. ..-..-...|..++|+.||.|++|.+. ..|++|.++.++.... ..++-
T Consensus 139 SVGsQHDMIVnv~dWr~N~~----~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~Kykd-piPl~gRs~~l 212 (1080)
T KOG1408|consen 139 SVGSQHDMIVNVNDWRVNSS----GASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKD-PIPLPGRSYFL 212 (1080)
T ss_pred eeccccceEEEhhhhhhccc----ccccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccC-Cccccchhhhc
Confidence 5443 45677887752222 222234568999999999999999875 5999999876652110 00000
Q ss_pred ---------------CCCCCCceeEE--------------------------EeEEecCCeEEEEcCCCcEEEEeCCCCe
Q 003467 247 ---------------GLGSGPELCIW--------------------------SLLSLRCGTLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 247 ---------------~~~~~~~~~v~--------------------------~v~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (817)
+........|. |++++ ..+|++|+.+|.|++++..+-.
T Consensus 213 g~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs-~r~I~cgCa~g~vrlFnp~tL~ 291 (1080)
T KOG1408|consen 213 GNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS-SRLIACGCAKGMVRLFNPETLD 291 (1080)
T ss_pred cccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee-cceEEEeeccceeeecCcchhh
Confidence 00000111122 22222 3478999999999999987643
Q ss_pred EEEEeec------------------------CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccc
Q 003467 286 LLQAHSF------------------------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIK 341 (817)
Q Consensus 286 ~~~~~~~------------------------h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (817)
.+.++.- .-.+..++.|++....|.+...|..+++||++......
T Consensus 292 y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg----------- 360 (1080)
T KOG1408|consen 292 YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----------- 360 (1080)
T ss_pred hccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccc-----------
Confidence 3333210 11245578899988999999999999999998765221
Q ss_pred eEEEeeccccCCCccceeEeec-cc--CCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 342 KWIYVGSVRAHTHDVRALTVAV-PI--SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 342 ~~~~~~~~~~h~~~v~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
.......|+..|..+...+ .. +.....|. ..+++++.|++|++|++...
T Consensus 361 ---k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-------------------------~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 361 ---KCSSMLYHSACIWDVENLPCNVHSPTAACLPR-------------------------GCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred ---ceeeeeeccceeeeeccccccccCcccccCCc-------------------------cceeEecCCCcEEEeecccc
Confidence 3456677888777776541 00 00111122 27999999999999999763
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 498 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 498 (817)
..-....... ++.+-.-+...+....+... ....+. .+-..-.......+++++
T Consensus 413 tnn~vyrRNi--------------ls~~l~ki~y~d~~~q~~~d---------~~~~~f---dka~~s~~d~r~G~R~~~ 466 (1080)
T KOG1408|consen 413 TNNQVYRRNI--------------LSANLSKIPYEDSTQQIMHD---------ASAGIF---DKALVSTCDSRFGFRALA 466 (1080)
T ss_pred cccceeeccc--------------chhhhhcCccccCchhhhhh---------ccCCcc---cccchhhcCcccceEEEE
Confidence 2111100000 00000001111110000000 000000 000111122346699999
Q ss_pred ecCCCcEEEEEcC-CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec---CCCEEEEEecCCcEEEEEccC-Cc
Q 003467 499 ISNSGMLFAYSDH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY---DSSQLIIAGHDRRIYVVDVSS-SE 573 (817)
Q Consensus 499 ~s~~g~~la~~~~-~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp---d~~~l~~~~~dg~i~v~d~~~-~~ 573 (817)
+||+|++||.|+. |.+++|++.... .. ..+..|...|.|+.||. ..++||+++.|..|.|||+.. ..
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~---~~-----~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELE---YT-----CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhh---hh-----hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 9999999999865 999999998621 11 34567888999999975 467899999999999999853 35
Q ss_pred eeeeeccCcccc---------------------------------cccCC-----CCCCceeEEEEccCCCEEEEEeCCC
Q 003467 574 LLHTFTPCREEH---------------------------------DREIQ-----PSEPPITKMFTSSDGQWLAAVNCFG 615 (817)
Q Consensus 574 ~~~~~~~~~~~~---------------------------------~~~~~-----~~~~~i~~l~~s~dg~~la~~~~dg 615 (817)
+++++.+|.... +..++ .....+..|++.|..+++++++.|.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 556665532100 00011 1234577899999999999999999
Q ss_pred cEEEEECCCcceEEEEecCCC--CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCce
Q 003467 616 DVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEV 693 (817)
Q Consensus 616 ~i~vwd~~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v 693 (817)
+|+|||+++++....++..++ +....+...| .+-+||+.+.|.++.+||..++++ ..+..+|...|
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc-----------vA~m~GHsE~V 686 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC-----------VAQMTGHSEAV 686 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh-----------hhhhcCcchhe
Confidence 999999999999888866544 5677889999 999999999999999999999998 88999999999
Q ss_pred eEEEECCCCCCCEEEEEcCceEEEEEcC
Q 003467 694 IGLSFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 694 ~~l~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
+++.|.+| ....|-+.++..|++..+.
T Consensus 687 TG~kF~nD-CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 687 TGVKFLND-CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeeccc-chhheeecCCceEEEEECc
Confidence 99999998 5555666677777766543
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=274.24 Aligned_cols=298 Identities=23% Similarity=0.359 Sum_probs=256.6
Q ss_pred eeeeeccCCCceEEEEECCC-CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 5 RNSSIDWKPSPVVALATSAD-DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
-.+.+.+|++.|..+|++|- |..||+++.|..|+||+...+. .|.|...+.+.|+..|+++||+|.|++ |++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g~~------La~ 78 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHGRY------LAS 78 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCCcE------EEE
Confidence 35667999999999999998 8999999999999999998643 588999998888999999999999999 999
Q ss_pred eeCCCeEEEEECCC--CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 84 SSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 84 ~~~d~~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+|.|.++.+|.-.. -+++.++.+|...|.+++|+++|
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG----------------------------------------- 117 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG----------------------------------------- 117 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-----------------------------------------
Confidence 99999999998764 46889999999999999999999
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC---CceE
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL---GYEI 238 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~---g~~~ 238 (817)
++||+++.|..|.||.+..+.++.....|..|+..|..+.|+|...+|++++.|.+|++|.-.. -.+.
T Consensus 118 ---------~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~ 188 (312)
T KOG0645|consen 118 ---------NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV 188 (312)
T ss_pred ---------CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE
Confidence 5999999999999999998899998899999999999999999999999999999999998762 3466
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
+++. +|+..||+++|.+.| +|++++.|++++||-..+.- -..|...++.++|. + ..|++++.|+.
T Consensus 189 ~tl~--------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~-~~IaS~ggD~~ 254 (312)
T KOG0645|consen 189 QTLD--------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-N-GVIASGGGDDA 254 (312)
T ss_pred EEec--------CccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-c-cceEeccCCCE
Confidence 6666 788899999999999 89999999999999866221 13467889999998 4 47999999999
Q ss_pred EEEEEeecccCCCCCCCCCccccceEEEee-ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccC
Q 003467 318 VILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 396 (817)
Q Consensus 318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (817)
|++|.-.... ....|.++. .-..|..+|+++++. |...
T Consensus 255 i~lf~~s~~~-----------d~p~~~l~~~~~~aHe~dVNsV~w~---------p~~~--------------------- 293 (312)
T KOG0645|consen 255 IRLFKESDSP-----------DEPSWNLLAKKEGAHEVDVNSVQWN---------PKVS--------------------- 293 (312)
T ss_pred EEEEEecCCC-----------CCchHHHHHhhhcccccccceEEEc---------CCCC---------------------
Confidence 9999876432 112233333 446788899999997 5322
Q ss_pred CCcEEEEecCCCeEEEEeCC
Q 003467 397 GVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 397 ~~~~l~s~~~dg~i~~~~~~ 416 (817)
++|++|+.||.+++|.+.
T Consensus 294 --~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 --NRLASGGDDGIVNFWELE 311 (312)
T ss_pred --CceeecCCCceEEEEEec
Confidence 599999999999999864
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=299.01 Aligned_cols=468 Identities=14% Similarity=0.179 Sum_probs=345.7
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
..+|.++.|+|..++ ++++-.+|.|.+||.++...++.++...-+|.+..|-+..
T Consensus 13 SdRVKsVd~HPtePw------~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk------------------- 67 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPW------ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK------------------- 67 (794)
T ss_pred CCceeeeecCCCCce------EEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-------------------
Confidence 689999999999998 8999999999999999999999999999999999998876
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 219 (817)
+.+++|++|..|+||+..+.+.+ +.|..|..-|.|++.+|...+++
T Consensus 68 -------------------------------nWiv~GsDD~~IrVfnynt~ekV---~~FeAH~DyIR~iavHPt~P~vL 113 (794)
T KOG0276|consen 68 -------------------------------NWIVTGSDDMQIRVFNYNTGEKV---KTFEAHSDYIRSIAVHPTLPYVL 113 (794)
T ss_pred -------------------------------ceEEEecCCceEEEEecccceee---EEeeccccceeeeeecCCCCeEE
Confidence 59999999999999999988777 89999999999999999999999
Q ss_pred EeeCCCcEEEEECCCC-ceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccC
Q 003467 220 SGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD 296 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~ 296 (817)
+++.|-+|++||.+.+ .+.+.+. +|+..|.+++|.|.. ++++++-|++|++|.+.+..+..++.+|...
T Consensus 114 tsSDDm~iKlW~we~~wa~~qtfe--------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG 185 (794)
T KOG0276|consen 114 TSSDDMTIKLWDWENEWACEQTFE--------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG 185 (794)
T ss_pred ecCCccEEEEeeccCceeeeeEEc--------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence 9999999999999864 4556666 899999999999976 8999999999999999999999999999999
Q ss_pred eeEEEEecCC--CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcc
Q 003467 297 VNALAAAPSH--NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 374 (817)
Q Consensus 297 v~~l~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 374 (817)
|.|+.+-+-| .+|++|+.|.+|++||..+.. ++.++.+|++.|..+.|.+.+
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-----------------CV~TLeGHt~Nvs~v~fhp~l--------- 239 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-----------------CVQTLEGHTNNVSFVFFHPEL--------- 239 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHH-----------------HHHHhhcccccceEEEecCCC---------
Confidence 9999998754 699999999999999999998 899999999999999997322
Q ss_pred ccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEE-Ee
Q 003467 375 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV-QY 453 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~ 453 (817)
+.++||++||++++|+..+.+....... ....+.+++..+....++ ..
T Consensus 240 ------------------------piiisgsEDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 240 ------------------------PIIISGSEDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ------------------------cEEEEecCCccEEEecCcceehhhhhhc-------CCceEEEEeecCCCCeEEEec
Confidence 4999999999999999988764432211 123444554444333333 22
Q ss_pred CCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC--CceEEEEeecC---CCCCce
Q 003467 454 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH--VKPSLFELKKG---KVGQGE 528 (817)
Q Consensus 454 ~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~--~~i~l~~~~~~---~~~~~~ 528 (817)
++...+..+. .....+.+++.|+.+-+... ..+.+..+... .++..
T Consensus 289 Deg~i~v~lg----------------------------reeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgEr- 339 (794)
T KOG0276|consen 289 DEGSVTVKLG----------------------------REEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGER- 339 (794)
T ss_pred cCCcEEEEcc----------------------------CCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcc-
Confidence 2222222222 22334456666654433211 22222222110 01111
Q ss_pred EEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEE
Q 003467 529 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 608 (817)
+.+...++....-....++-||+|+++++++ ||.-.||..-..+- + +.+.-....|++|.+..
T Consensus 340 L~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn----K------------~fG~~~eFvw~~dsne~ 402 (794)
T KOG0276|consen 340 LPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRN----K------------AFGSGLEFVWAADSNEF 402 (794)
T ss_pred ccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhh----c------------ccccceeEEEcCCCCeE
Confidence 1111122222222344677899999988776 78788886322211 1 34556778999998899
Q ss_pred EEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhc
Q 003467 609 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 688 (817)
Q Consensus 609 a~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~ 688 (817)
|+-..++.|+++ ++.+.+..+.. . .+ +..+. .|.+|.+.+ ++.+++||.+++++ .+++.
T Consensus 403 avRes~~~vki~--knfke~ksi~~-~--~~-~e~i~--gg~Llg~~s-s~~~~fydW~~~~l-----------VrrI~- 461 (794)
T KOG0276|consen 403 AVRESNGNVKIF--KNFKEHKSIRP-D--MS-AEGIF--GGPLLGVRS-SDFLCFYDWESGEL-----------VRRIE- 461 (794)
T ss_pred EEEecCCceEEE--ecceecccccc-c--cc-eeeec--CCceEEEEe-CCeEEEEEcccceE-----------EEEEe-
Confidence 999889999999 66665544421 1 11 22232 455555554 56699999999997 33333
Q ss_pred CCCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 689 FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 689 ~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
-...++.|+.+ +..+.+.+...++++-+++
T Consensus 462 --v~~k~v~w~d~--g~lVai~~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 462 --VTSKHVYWSDN--GELVAIAGDDSFYILKFNA 491 (794)
T ss_pred --eccceeEEecC--CCEEEEEecCceeEEEecH
Confidence 34568899975 5777777888888877766
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-37 Score=274.33 Aligned_cols=290 Identities=16% Similarity=0.243 Sum_probs=243.0
Q ss_pred eeccCCCceEEEEECCC-CCeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 8 SIDWKPSPVVALATSAD-DSQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 8 ~~~~h~~~I~~la~spd-g~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.+++|+++|++++..+. ...|.+++.|.+|.+|++...... -..++.+.|| ...|+.++.++||++ .++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg~~------alS~s 82 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDGNF------ALSAS 82 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCCce------EEecc
Confidence 46899999999999997 567888999999999998754321 1247788886 899999999999998 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.|+++++||+.+|+..+.|.+|...|.+++|++|.
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn--------------------------------------------- 117 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN--------------------------------------------- 117 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCC---------------------------------------------
Confidence 99999999999999999999999999999999998
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC--CCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
+.+++|+.|.+|++|++..... +...-..+.+.|.|+.|+|+ ..+|++++.|++|++||+++-+....+.
T Consensus 118 -----~qivSGSrDkTiklwnt~g~ck--~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~- 189 (315)
T KOG0279|consen 118 -----RQIVSGSRDKTIKLWNTLGVCK--YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI- 189 (315)
T ss_pred -----ceeecCCCcceeeeeeecccEE--EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-
Confidence 5899999999999999964332 22333344889999999998 6899999999999999999888877777
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
+|...++.++++||| ..++|+.||.+.+||++.++.++.+. |...|.+++|+|+.-.|+.+ .+..|+|||
T Consensus 190 -------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwd 260 (315)
T KOG0279|consen 190 -------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWD 260 (315)
T ss_pred -------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEe
Confidence 799999999999999 78999999999999999999988885 68899999999987555554 556799999
Q ss_pred eecccCCCCCCCCCccccceEEEeecccc-------CCCccc--eeEeecccCCCCCCCccccccccCCCCCcccccccc
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRA-------HTHDVR--ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 393 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
+.++.. +..++. ...++. +++++ +||.
T Consensus 261 l~~~~~-----------------v~~l~~d~~g~s~~~~~~~clslaws---------~dG~------------------ 296 (315)
T KOG0279|consen 261 LESKAV-----------------VEELKLDGIGPSSKAGDPICLSLAWS---------ADGQ------------------ 296 (315)
T ss_pred ccchhh-----------------hhhccccccccccccCCcEEEEEEEc---------CCCc------------------
Confidence 998873 222221 122333 34554 6675
Q ss_pred ccCCCcEEEEecCCCeEEEEeCC
Q 003467 394 AHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 394 ~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
.|++|..|+.|++|.+.
T Consensus 297 ------tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 ------TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ------EEEeeecCCcEEEEEee
Confidence 99999999999999864
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-37 Score=268.05 Aligned_cols=295 Identities=15% Similarity=0.160 Sum_probs=245.6
Q ss_pred CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCe--EEEEeecC
Q 003467 216 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT--LLQAHSFH 293 (817)
Q Consensus 216 ~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h 293 (817)
-+|++++.|.+||+|...+|.+.+++. .....|+.+...||+..+++.....|++||++++. ++.++.+|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence 478999999999999999999999998 67889999999999965555566789999999865 58999999
Q ss_pred ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCc
Q 003467 294 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 373 (817)
Q Consensus 294 ~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 373 (817)
+..|.++.|..+|+.+++||.||+++|||++... ......|..+|+++... |+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~------------------~qR~~~~~spVn~vvlh---------pn 135 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS------------------CQRNYQHNSPVNTVVLH---------PN 135 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcc------------------cchhccCCCCcceEEec---------CC
Confidence 9999999999999999999999999999999854 33445667899999987 55
Q ss_pred cccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEe
Q 003467 374 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY 453 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 453 (817)
.. .|++|..+|.|++||+.+..-.
T Consensus 136 Qt------------------------eLis~dqsg~irvWDl~~~~c~-------------------------------- 159 (311)
T KOG0315|consen 136 QT------------------------ELISGDQSGNIRVWDLGENSCT-------------------------------- 159 (311)
T ss_pred cc------------------------eEEeecCCCcEEEEEccCCccc--------------------------------
Confidence 54 8999999999999999763211
Q ss_pred CCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEe
Q 003467 454 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 454 ~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
.++.......|.++++.|||.+++.+ +.|..++|++-.......+ .+
T Consensus 160 ------------------------------~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--~P 207 (311)
T KOG0315|consen 160 ------------------------------HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--EP 207 (311)
T ss_pred ------------------------------cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc--eE
Confidence 11111222568899999999998886 5599999999874333343 33
Q ss_pred eecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 533 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
..+++.|...+..+.+|||+++||+++.|.+++||+.++. +....+++ |...+...+||.||+||++|
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-----------h~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-----------HQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-----------CCceEEeeeeccCccEEEec
Confidence 3557888899999999999999999999999999999887 66667777 89999999999999999999
Q ss_pred eCCCcEEEEECCCcceEEEEecCCCCCeEEEEec
Q 003467 612 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 645 (817)
Q Consensus 612 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~s 645 (817)
+.|+.+++|+++.++........+. ...+++..
T Consensus 277 ssd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred CCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999999999999998777765553 55565543
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-37 Score=271.63 Aligned_cols=296 Identities=20% Similarity=0.209 Sum_probs=248.6
Q ss_pred eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC
Q 003467 99 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 178 (817)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (817)
....++.+|.+.|..++..+.+. +.+++++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~-------------------------------------------------~~l~sasr 36 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNS-------------------------------------------------DILVSASR 36 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCC-------------------------------------------------ceEEEccc
Confidence 44567899999999999999864 38999999
Q ss_pred CCcEEEEEecCCCcee---EeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCcee
Q 003467 179 DGCVRIYRITDSDELI---YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 255 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 255 (817)
|..+.+|++... ... ..+.+.+|...|..++.++||++.++++.|+++++||+.+|+..+.+. +|...
T Consensus 37 Dk~ii~W~L~~d-d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--------GH~~d 107 (315)
T KOG0279|consen 37 DKTIIVWKLTSD-DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--------GHTKD 107 (315)
T ss_pred ceEEEEEEeccC-ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE--------ecCCc
Confidence 999999999733 222 248899999999999999999999999999999999999999999988 89999
Q ss_pred EEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecC--ccCeeEEEEecC--CCEEEEEccCCcEEEEEeecccCCC
Q 003467 256 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGP 330 (817)
Q Consensus 256 v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (817)
|.+++|++|. ++++|+.|.+|++|+.. |.+..++..+ ...|.|+.|+|+ ..+|++++.|++|++||+.+.+
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--- 183 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--- 183 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---
Confidence 9999999999 89999999999999998 5555555544 788999999998 6789999999999999999988
Q ss_pred CCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeE
Q 003467 331 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 410 (817)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 410 (817)
....+.+|++-++.++++ |||. +.++|+.||.+
T Consensus 184 --------------l~~~~~gh~~~v~t~~vS---------pDGs------------------------lcasGgkdg~~ 216 (315)
T KOG0279|consen 184 --------------LRTTFIGHSGYVNTVTVS---------PDGS------------------------LCASGGKDGEA 216 (315)
T ss_pred --------------hhhccccccccEEEEEEC---------CCCC------------------------EEecCCCCceE
Confidence 667889999999999998 9986 99999999999
Q ss_pred EEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecC
Q 003467 411 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 490 (817)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 490 (817)
.+||+++.+.+ +. ..+
T Consensus 217 ~LwdL~~~k~l--------------------------------------ys--------------------------l~a 232 (315)
T KOG0279|consen 217 MLWDLNEGKNL--------------------------------------YS--------------------------LEA 232 (315)
T ss_pred EEEEccCCcee--------------------------------------Ee--------------------------ccC
Confidence 99999875521 11 122
Q ss_pred CCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEee----ecCCccccceeEEEEecCCCEEEEEecCCcEEE
Q 003467 491 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK----RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 566 (817)
Q Consensus 491 ~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v 566 (817)
...|.+++|+|+.-+|+.+.+..|+||+++. ...+..++. ...........+++||+||..|+.|-.|+.|++
T Consensus 233 ~~~v~sl~fspnrywL~~at~~sIkIwdl~~---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAATATSIKIWDLES---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred CCeEeeEEecCCceeEeeccCCceEEEeccc---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 3668899999999999999999999999986 333222211 111122335678899999999999999999999
Q ss_pred EEcc
Q 003467 567 VDVS 570 (817)
Q Consensus 567 ~d~~ 570 (817)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9874
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=302.58 Aligned_cols=486 Identities=13% Similarity=0.164 Sum_probs=352.9
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
|+-.++.|..++|+|...++.++-.+|.|++||+.-+. +...+.+| .++|.+++|+|.+.+ ++|||+|-
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeH-dGpVRgv~FH~~qpl------FVSGGDDy 73 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEH-DGPVRGVDFHPTQPL------FVSGGDDY 73 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhcc-CCccceeeecCCCCe------EEecCCcc
Confidence 45667889999999999999999999999999998776 57778887 899999999999988 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|+||+..+.+|+.++.+|-.-|..+.|++.-
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHhey------------------------------------------------ 105 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY------------------------------------------------ 105 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCC------------------------------------------------
Confidence 99999999999999999999999999999987
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE------
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT------ 242 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~------ 242 (817)
+.++++++|.+|+||+..+++.+ ..+.||..-|.|..|+|..+.++++|-|.+|||||+..-+....-.
T Consensus 106 --PWIlSASDDQTIrIWNwqsr~~i---avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 106 --PWILSASDDQTIRIWNWQSRKCI---AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred --ceEEEccCCCeEEEEeccCCceE---EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 59999999999999999988887 8999999999999999999999999999999999985321110000
Q ss_pred -------eecC--------CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCe--EEEEeecCccCeeEEEEec
Q 003467 243 -------VGLG--------GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 243 -------~~~~--------~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s~ 304 (817)
..+. ....+|...|+-++|.|.- .|++|+.|..|++|....-+ .+.+..+|.+.|.++-|+|
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence 0000 0134799999999999987 89999999999999987433 3677899999999999999
Q ss_pred CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCC
Q 003467 305 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 384 (817)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (817)
..+.+++.|.|++|++||+.... .+.+++.....-..++.. |..
T Consensus 261 ~q~lIlSnsEDksirVwDm~kRt-----------------~v~tfrrendRFW~laah---------P~l---------- 304 (1202)
T KOG0292|consen 261 HQDLILSNSEDKSIRVWDMTKRT-----------------SVQTFRRENDRFWILAAH---------PEL---------- 304 (1202)
T ss_pred ccceeEecCCCccEEEEeccccc-----------------ceeeeeccCCeEEEEEec---------CCc----------
Confidence 99999999999999999999877 566777666777778776 444
Q ss_pred CccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecc
Q 003467 385 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL 464 (817)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~ 464 (817)
.|+.++.|+-+.+|.+.... ...+++.++.+.+- +..+.-+++.+
T Consensus 305 ---------------NLfAAgHDsGm~VFkleREr-------------------pa~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 305 ---------------NLFAAGHDSGMIVFKLERER-------------------PAYAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred ---------------ceeeeecCCceEEEEEcccC-------------------ceEEEcCCEEEEEc-cceEEeeeccc
Confidence 46666677777777665311 13344455544444 67788888776
Q ss_pred cCCcccCCCCCCCCccceeeeeeecC--CCCeEEEEecCCCcEEEEE---cCCceEEEEeecCCCCCceEEEeeecCCcc
Q 003467 465 ENNVESRSSSGGHASTSLLVQVKSKA--SRKIICSTISNSGMLFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRK 539 (817)
Q Consensus 465 ~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~la~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (817)
.... .+..+...+ .....++.++|....+..+ ..+...++.+.....+..- . +....
T Consensus 350 ~~d~-------------~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~--~-~~~~k-- 411 (1202)
T KOG0292|consen 350 QKDT-------------AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD--G-KDVKK-- 411 (1202)
T ss_pred cccc-------------eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC--c-hhhhc--
Confidence 4432 344444333 2457788899877655444 3355556666542121110 0 00000
Q ss_pred ccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEE
Q 003467 540 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI 619 (817)
Q Consensus 540 ~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v 619 (817)
.... ...|-..+++.+.-..+..+.+=++. .+..+.+.. ......+-+.-+|.+|+.. ...|.+
T Consensus 412 ~tG~-~a~fvarNrfavl~k~~~~v~ik~l~-N~vtkkl~~------------~~~~~~IF~ag~g~lll~~--~~~v~l 475 (1202)
T KOG0292|consen 412 GTGE-GALFVARNRFAVLDKSNEQVVIKNLK-NKVTKKLLL------------PESTDDIFYAGTGNLLLRS--PDSVTL 475 (1202)
T ss_pred CCCC-ceEEEEecceEEEEecCcceEEeccc-chhhhcccC------------cccccceeeccCccEEEEc--CCeEEE
Confidence 1112 22233333333333335556666654 333344442 2345556666677666653 334999
Q ss_pred EECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 620 FNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 620 wd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
||++..+....++. ..+.-+.||+ |..+++.-+ -++|.+.+.+-
T Consensus 476 fdvQq~~~~~si~~---s~vkyvvws~-dm~~vAll~-Kh~i~i~~kkL 519 (1202)
T KOG0292|consen 476 FDVQQKKKVGSIKV---SKVKYVVWSN-DMSRVALLS-KHTITIADKKL 519 (1202)
T ss_pred EEeecceEEEEEec---CceeEEEEcC-ccchhhhcc-cceEEEEecch
Confidence 99988877666643 4788899999 877766655 45677776543
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=279.70 Aligned_cols=341 Identities=17% Similarity=0.230 Sum_probs=280.1
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
...|..|.++|.+++.+|+.+++|+|+.|..-.||+..++. ....+.|| +.+|+++.||.||.+ ||+|+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgH-KDSVt~~~Fshdgtl------LATGd 125 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGH-KDSVTCCSFSHDGTL------LATGD 125 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCC-CCceEEEEEccCceE------EEecC
Confidence 45678999999999999999999999999999999999998 46778888 899999999999998 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.+|.|.||...++.....+......|.-|.|+|.+
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a--------------------------------------------- 160 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA--------------------------------------------- 160 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCceEEEEecccc---------------------------------------------
Confidence 99999999999999999998778889999999977
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
..|++|+.||.+.+|.+.++... +.+.+|..++++=.|.|||++++++..||+|++||..+|+.+.++..
T Consensus 161 -----~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~-- 230 (399)
T KOG0296|consen 161 -----HILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQ-- 230 (399)
T ss_pred -----cEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecc--
Confidence 48999999999999999865444 88999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.......++.+...+ .++.|..++.+++-+..+|+.+....+ .+..+-....+
T Consensus 231 -----~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------~~~~l~~~~e~--------- 284 (399)
T KOG0296|consen 231 -----AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------TVPELKPSQEE--------- 284 (399)
T ss_pred -----cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC------------CCccccccchh---------
Confidence 234556677787777 788899999999998888887765543 01001000000
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
....|.++.++. .-++.++|
T Consensus 285 ---------------------------~~esve~~~~ss---------------------------------~lpL~A~G 304 (399)
T KOG0296|consen 285 ---------------------------LDESVESIPSSS---------------------------------KLPLAACG 304 (399)
T ss_pred ---------------------------hhhhhhhccccc---------------------------------ccchhhcc
Confidence 011122222221 11378888
Q ss_pred cCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceee
Q 003467 405 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 484 (817)
Q Consensus 405 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~ 484 (817)
+.||+|.+||+.....
T Consensus 305 ~vdG~i~iyD~a~~~~---------------------------------------------------------------- 320 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTL---------------------------------------------------------------- 320 (399)
T ss_pred cccceEEEEecccchh----------------------------------------------------------------
Confidence 8888888888764210
Q ss_pred eeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcE
Q 003467 485 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI 564 (817)
Q Consensus 485 ~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i 564 (817)
+....|..+|+.+.|-+ ..+|++++.+|.|
T Consensus 321 -------------------------------------------------R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 321 -------------------------------------------------RHICEHEDGVTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred -------------------------------------------------heeccCCCceEEEEEcC-cchheeeccCceE
Confidence 11122333688888988 7899999999999
Q ss_pred EEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 003467 565 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 623 (817)
Q Consensus 565 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 623 (817)
+.||..+|+++.++.+ |...|.+++++|+++++++++.|++.+||+..
T Consensus 351 ~~wDaRtG~l~~~y~G-----------H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTG-----------HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EeeeccccceEEEEec-----------CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999 99999999999999999999999999999864
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6e-37 Score=280.74 Aligned_cols=293 Identities=19% Similarity=0.266 Sum_probs=257.7
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.|.+.+|-++|.|+++-|-..++|+|+.|++|.|||+.+++ +..++.|| ...|..+++|+--.| ||+++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~----LkltltGh-i~~vr~vavS~rHpY------lFs~g 212 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ----LKLTLTGH-IETVRGVAVSKRHPY------LFSAG 212 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe----EEEeecch-hheeeeeeecccCce------EEEec
Confidence 46678999999999999999999999999999999999998 68899998 799999999999988 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.|+.|+.||++..+.++.+.+|-..|.|++.+|.-
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl--------------------------------------------- 247 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL--------------------------------------------- 247 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccc---------------------------------------------
Confidence 99999999999999999999999999999999987
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
..|++|+.|..++|||+.+...+ ..+.+|...|.++.+.|-...+++|+.|++|++||+..|+....+.
T Consensus 248 -----dvl~t~grDst~RvWDiRtr~~V---~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt--- 316 (460)
T KOG0285|consen 248 -----DVLVTGGRDSTIRVWDIRTRASV---HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT--- 316 (460)
T ss_pred -----eeEEecCCcceEEEeeecccceE---EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee---
Confidence 49999999999999999987776 8999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.|...|.+++..|.. .+++++.| .|+-|++..|..++.+.+|++-|++++.+.|+ ++++|+..|.+.+||..
T Consensus 317 -----~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 317 -----HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred -----cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 799999999999998 56776666 69999999999999999999999999999887 78999999999999998
Q ss_pred cccCCCCCCCCCccccceEEEeeccc-----cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCc
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVR-----AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 399 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (817)
++-... ...+.. .....|.+.+|. .. +.
T Consensus 390 sg~nyQ--------------~~~t~vqpGSl~sEagI~as~fD---------kt------------------------g~ 422 (460)
T KOG0285|consen 390 SGHNYQ--------------RGQTIVQPGSLESEAGIFASCFD---------KT------------------------GS 422 (460)
T ss_pred cCcccc--------------cccccccCCccccccceeEEeec---------cc------------------------Cc
Confidence 875210 111111 112345566653 22 34
Q ss_pred EEEEecCCCeEEEEeCCccc
Q 003467 400 MLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 400 ~l~s~~~dg~i~~~~~~~~~ 419 (817)
.|++|..|.+|++|.-++..
T Consensus 423 rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 423 RLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eEEeccCCcceEEEeccccc
Confidence 99999999999999876644
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=263.30 Aligned_cols=296 Identities=17% Similarity=0.275 Sum_probs=246.2
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
-.|+|+|.|.+|++|...+|.|.++++...+.|..+.+.|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-------------------------------------- 52 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK-------------------------------------- 52 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc--------------------------------------
Confidence 459999999999999999999999999889999999999998
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
+.||+++. ..||+||+.+++.. ...++.+|...|+++.|..||+++++|++||+++|||++...+.
T Consensus 53 ------------~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q 118 (311)
T KOG0315|consen 53 ------------KDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ 118 (311)
T ss_pred ------------chhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence 36666665 68999999966552 34889999999999999999999999999999999999986666
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEe-ecCccCeeEEEEecCCCEEEEEccCC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
+.+. +..+|+++...|+. .|++|+.+|.|++||+....+...+ ......|.+++..|||++++.+...|
T Consensus 119 R~~~---------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 119 RNYQ---------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred hhcc---------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 6664 77999999999988 7999999999999999987665554 33456799999999999999999999
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccC
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 396 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (817)
..++|++.+... ....+.+..++.|+.-+....++ ||++
T Consensus 190 ~cyvW~l~~~~~-----------~s~l~P~~k~~ah~~~il~C~lS---------Pd~k--------------------- 228 (311)
T KOG0315|consen 190 NCYVWRLLNHQT-----------ASELEPVHKFQAHNGHILRCLLS---------PDVK--------------------- 228 (311)
T ss_pred cEEEEEccCCCc-----------cccceEhhheecccceEEEEEEC---------CCCc---------------------
Confidence 999999987552 22344666777787777777776 7776
Q ss_pred CCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCC
Q 003467 397 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG 476 (817)
Q Consensus 397 ~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g 476 (817)
+|++++.|.++++|+.+.+-
T Consensus 229 ---~lat~ssdktv~iwn~~~~~--------------------------------------------------------- 248 (311)
T KOG0315|consen 229 ---YLATCSSDKTVKIWNTDDFF--------------------------------------------------------- 248 (311)
T ss_pred ---EEEeecCCceEEEEecCCce---------------------------------------------------------
Confidence 77777777777777765420
Q ss_pred CCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEE
Q 003467 477 HASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI 556 (817)
Q Consensus 477 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~ 556 (817)
+ . ...+.+|...+...+||.||+||+
T Consensus 249 --------------------------------------------------k---l-e~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 249 --------------------------------------------------K---L-ELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred --------------------------------------------------e---e-EEEeecCCceEEeeeeccCccEEE
Confidence 0 0 133456666899999999999999
Q ss_pred EEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEE
Q 003467 557 IAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 601 (817)
Q Consensus 557 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 601 (817)
+|+.|+.+++|++..++.++...+ |.....|++.
T Consensus 275 Tassd~~~rlW~~~~~k~v~qy~g-----------h~K~~vc~~l 308 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEVRQYQG-----------HHKAAVCVAL 308 (311)
T ss_pred ecCCCCceeecccccCceeeecCC-----------cccccEEEEe
Confidence 999999999999999999999998 6666667665
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=285.17 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=265.0
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+.+|..+|+.+-|+|+-..+|+++.|++|++||..+++ ++..+.|| ..+|..++|+..|++ |++++.|-
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~----~e~~LrGH-t~sv~di~~~a~Gk~------l~tcSsDl 172 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE----LERSLRGH-TDSVFDISFDASGKY------LATCSSDL 172 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh----hhhhhhcc-ccceeEEEEecCccE------EEecCCcc
Confidence 56799999999999999999999999999999999998 68899999 677999999999998 99999999
Q ss_pred eEEEEECCC-CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 89 SVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 89 ~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
.+.+||.++ .++++.+.+|...|.+++|-|-|
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g----------------------------------------------- 205 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG----------------------------------------------- 205 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecC-----------------------------------------------
Confidence 999999987 77888999999999999999998
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCC
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 247 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~ 247 (817)
.++++++.|.+|+.|++.++..+ .++.+|...|..++.+.||..+++++.|.+|++|-+.++++...+.
T Consensus 206 ---d~ilS~srD~tik~We~~tg~cv---~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR----- 274 (406)
T KOG0295|consen 206 ---DHILSCSRDNTIKAWECDTGYCV---KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR----- 274 (406)
T ss_pred ---CeeeecccccceeEEecccceeE---EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----
Confidence 49999999999999999998887 8999999999999999999999999999999999999998888887
Q ss_pred CCCCCceeEEEeEEecC--------------C--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEE
Q 003467 248 LGSGPELCIWSLLSLRC--------------G--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 248 ~~~~~~~~v~~v~~~~~--------------~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~ 311 (817)
.|+-+|-+++|.|. + .+.+++.|++|++||+.+|.++.++.+|...|..++|+|.|+||++
T Consensus 275 ---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 275 ---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred ---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE
Confidence 79999999998652 2 6889999999999999999999999999999999999999999999
Q ss_pred EccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccc
Q 003467 312 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH 391 (817)
Q Consensus 312 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (817)
+..|+++++||+.+.+ +..++..|.+-|.++.|. ..
T Consensus 352 caDDktlrvwdl~~~~-----------------cmk~~~ah~hfvt~lDfh----------~~----------------- 387 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQ-----------------CMKTLEAHEHFVTSLDFH----------KT----------------- 387 (406)
T ss_pred EecCCcEEEEEeccce-----------------eeeccCCCcceeEEEecC----------CC-----------------
Confidence 9999999999999998 888999999999999993 32
Q ss_pred ccccCCCcEEEEecCCCeEEEEeC
Q 003467 392 KWAHLGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 392 ~~~~~~~~~l~s~~~dg~i~~~~~ 415 (817)
.+++++|+.|..+++|.-
T Consensus 388 ------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 ------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ------CceEEeccccceeeeeec
Confidence 259999999999999963
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.8e-37 Score=311.17 Aligned_cols=252 Identities=24% Similarity=0.372 Sum_probs=230.9
Q ss_pred eeccCC--CceEEEEECCCCCeEEEEecCCcEEEEecCCCCC---------------------------CcEEEEEEcCC
Q 003467 8 SIDWKP--SPVVALATSADDSQVAAAREDGSLEIWLVSPGTS---------------------------GWHCQLTVHGD 58 (817)
Q Consensus 8 ~~~~h~--~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~g~ 58 (817)
+++.|+ ..++|..||+|+++||.|-.|..|++|.+...+. ......++.||
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 444443 6899999999999999999999999999874210 01224457788
Q ss_pred CCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 59 PKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 59 ~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
.++|..+.|+|+.++ |++++.|++|++|.+.+..++..+.+|..+||.+.|+|.|
T Consensus 451 -~GPVyg~sFsPd~rf------LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G------------------ 505 (707)
T KOG0263|consen 451 -SGPVYGCSFSPDRRF------LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG------------------ 505 (707)
T ss_pred -CCceeeeeecccccc------eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc------------------
Confidence 899999999999999 9999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEE
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML 218 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 218 (817)
-++|+++.|++.++|.......+ +.+.+|-+.|.|+.|+|+..++
T Consensus 506 --------------------------------yYFatas~D~tArLWs~d~~~Pl---RifaghlsDV~cv~FHPNs~Y~ 550 (707)
T KOG0263|consen 506 --------------------------------YYFATASHDQTARLWSTDHNKPL---RIFAGHLSDVDCVSFHPNSNYV 550 (707)
T ss_pred --------------------------------eEEEecCCCceeeeeecccCCch---hhhcccccccceEEECCccccc
Confidence 39999999999999999866665 9999999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCe
Q 003467 219 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 297 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v 297 (817)
++||.|.++|+||+.+|..++.+. +|..+|.+++|+|+| +|++|+.||.|.+||+.++.++..+.+|++.|
T Consensus 551 aTGSsD~tVRlWDv~~G~~VRiF~--------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti 622 (707)
T KOG0263|consen 551 ATGSSDRTVRLWDVSTGNSVRIFT--------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI 622 (707)
T ss_pred ccCCCCceEEEEEcCCCcEEEEec--------CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce
Confidence 999999999999999999999998 899999999999999 79999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.++.|+.||..|++||.|.+|++||+....
T Consensus 623 ~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 623 YSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999987654
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-36 Score=285.40 Aligned_cols=278 Identities=21% Similarity=0.341 Sum_probs=249.7
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
..||+|+|+.+|..||+|..||.++||+..... ..++.-| +++|.+|.|+.+|.| |++++.|+++.+|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-----~~tl~~H-kgPI~slKWnk~G~y------ilS~~vD~ttilw 303 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-----ISTLGQH-KGPIFSLKWNKKGTY------ILSGGVDGTTILW 303 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh-----hhhhhcc-CCceEEEEEcCCCCE------EEeccCCccEEEE
Confidence 689999999999999999999999999987653 5667666 899999999999998 9999999999999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
|..+|...+.+.-|..+--.+.|-.+. .+
T Consensus 304 d~~~g~~~q~f~~~s~~~lDVdW~~~~---------------------------------------------------~F 332 (524)
T KOG0273|consen 304 DAHTGTVKQQFEFHSAPALDVDWQSND---------------------------------------------------EF 332 (524)
T ss_pred eccCceEEEeeeeccCCccceEEecCc---------------------------------------------------eE
Confidence 999999999999999887777787665 89
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
++.+.||.|+++.+...... .++.+|.+.|.++.|+|.|.+|++++.|++++||+...+.....+. .|+
T Consensus 333 ~ts~td~~i~V~kv~~~~P~---~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~--------~Hs 401 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPV---KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ--------AHS 401 (524)
T ss_pred eecCCCceEEEEEecCCCcc---eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh--------hhc
Confidence 99999999999999765555 8899999999999999999999999999999999998888888888 799
Q ss_pred eeEEEeEEecCC----------eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 254 LCIWSLLSLRCG----------TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 254 ~~v~~v~~~~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
..|+.+.|+|+| .+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++++|+.||.|.+|+.
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 999999999865 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.+++ .++...+ ...|..++|+ .+| +.|..
T Consensus 482 ~~~~-----------------l~~s~~~-~~~Ifel~Wn---------~~G------------------------~kl~~ 510 (524)
T KOG0273|consen 482 KTGK-----------------LVKSYQG-TGGIFELCWN---------AAG------------------------DKLGA 510 (524)
T ss_pred cchh-----------------eeEeecC-CCeEEEEEEc---------CCC------------------------CEEEE
Confidence 9987 4444444 3448888886 444 48999
Q ss_pred ecCCCeEEEEeCC
Q 003467 404 AGDDTKLFAYCAN 416 (817)
Q Consensus 404 ~~~dg~i~~~~~~ 416 (817)
+..|+.+++.|++
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999998864
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=275.21 Aligned_cols=298 Identities=17% Similarity=0.275 Sum_probs=264.0
Q ss_pred CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceee
Q 003467 48 GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 48 ~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~ 127 (817)
.|.+...+.|| .+.|.|+++.|.+++ +++++.|++|+|||+.+|+.+.++.+|-..|..+++|+..
T Consensus 140 pwKl~rVi~gH-lgWVr~vavdP~n~w------f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH------- 205 (460)
T KOG0285|consen 140 PWKLYRVISGH-LGWVRSVAVDPGNEW------FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH------- 205 (460)
T ss_pred cceehhhhhhc-cceEEEEeeCCCcee------EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-------
Confidence 46677888888 899999999999998 9999999999999999999999999999999999999987
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
++++++++|+.|+.||++.++.+ +...+|-..|.
T Consensus 206 -------------------------------------------pYlFs~gedk~VKCwDLe~nkvI---R~YhGHlS~V~ 239 (460)
T KOG0285|consen 206 -------------------------------------------PYLFSAGEDKQVKCWDLEYNKVI---RHYHGHLSGVY 239 (460)
T ss_pred -------------------------------------------ceEEEecCCCeeEEEechhhhhH---HHhccccceeE
Confidence 59999999999999999977666 88999999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC-CeEEEEcCCCcEEEEeCCCCeE
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-GTLVSADSTGSVQFWDSRHGTL 286 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~dg~i~iwd~~~~~~ 286 (817)
|++.+|.-+.|++|+.|.++||||+++...+..+. +|...|.++.+.|- .++++|+.|++|++||+..|+.
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~--------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS--------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEec--------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce
Confidence 99999999999999999999999999999999998 89999999999874 4999999999999999999999
Q ss_pred EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccC
Q 003467 287 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 366 (817)
Q Consensus 287 ~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 366 (817)
..++..|...|.+++.+|....+++++.| .|+.|++..+. .+..+.+|..-|++|+..
T Consensus 312 ~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~-----------------f~~nlsgh~~iintl~~n---- 369 (460)
T KOG0285|consen 312 MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE-----------------FLQNLSGHNAIINTLSVN---- 369 (460)
T ss_pred eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----------------hhhccccccceeeeeeec----
Confidence 99999999999999999999989998888 69999999988 677799999999999986
Q ss_pred CCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC-CceeeecceeecC
Q 003467 367 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR-VPIHLVHNTIFSH 445 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~ 445 (817)
.|+ ++++|+..|.+.+||..+.-.++.......|-. .....|...+|+.
T Consensus 370 -----sD~-------------------------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk 419 (460)
T KOG0285|consen 370 -----SDG-------------------------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK 419 (460)
T ss_pred -----cCc-------------------------eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc
Confidence 555 999999999999999998777765533222222 2334567788888
Q ss_pred CeEEEEEeCC--eEEEEEeccc
Q 003467 446 TSLLLVQYSC--RLDILSVRLE 465 (817)
Q Consensus 446 ~~~~l~~~~~--~i~i~~~~~~ 465 (817)
.+..|+++.. .|++|.-+..
T Consensus 420 tg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 420 TGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCceEEeccCCcceEEEecccc
Confidence 8887776554 8999986543
No 37
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-33 Score=281.25 Aligned_cols=603 Identities=15% Similarity=0.156 Sum_probs=379.7
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC--eEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL--KQKI 102 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~ 102 (817)
+..+|.|. ...|.+||..+.. ...++.|| ..+|+|+.|-|+.+. . ..+++|+.|+.|.+|.++.. .++.
T Consensus 25 ~~~vafGa-~~~Iav~dp~k~~----i~t~l~GH-~a~VnC~~~l~~s~~-~--a~~vsG~sD~~v~lW~l~~~~~~~i~ 95 (764)
T KOG1063|consen 25 GGLVAFGA-GPAIAVADPEKIL----IVTTLDGH-VARVNCVHWLPTSEI-V--AEMVSGDSDGRVILWKLRDEYLIKIY 95 (764)
T ss_pred cceEEecC-CceEEEeCcccce----eEEeccCC-ccceEEEEEcccccc-c--ceEEEccCCCcEEEEEEeehheEEEE
Confidence 34566664 4789999988753 46777887 899999999999872 1 24999999999999999832 3456
Q ss_pred EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCC-CCCccccccCCCCCCccccccccc-cC-CEEEEEeCC
Q 003467 103 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSND-SDDHETSESENDSDSDELHEQSVV-ED-RRVALACDD 179 (817)
Q Consensus 103 ~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~d 179 (817)
++++|...+.|+.-.+.- . .+ .........|+..... ...+...+... ...+.....+. ++ -.+|.|+.+
T Consensus 96 ~~~g~~~~~~cv~a~~~~--~-~~--~~ad~~v~vw~~~~~e~~~~~~~rf~~k--~~ipLcL~~~~~~~~~lla~Ggs~ 168 (764)
T KOG1063|consen 96 TIQGHCKECVCVVARSSV--M-TC--KAADGTVSVWDKQQDEVFLLAVLRFEIK--EAIPLCLAALKNNKTFLLACGGSK 168 (764)
T ss_pred eecCcceeEEEEEeeeeE--E-Ee--eccCceEEEeecCCCceeeehheehhhh--hHhhHHHhhhccCCcEEEEecCcc
Confidence 666666555544322211 1 11 0111112222221000 00000000000 11111111122 22 266777888
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC---EEEEeeCCCcEEEEECCCCce-------------------
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN---MLYSGSSDGYIRSWDAKLGYE------------------- 237 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~---~l~s~~~dg~i~vwd~~~g~~------------------- 237 (817)
..|.++.-. ...+.....+.||.+.|.+++|...+. +|++++.|..||||.+.-+..
T Consensus 169 ~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 169 FVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF 247 (764)
T ss_pred eEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence 888888766 446666688999999999999987554 899999999999998753321
Q ss_pred --EEEE--EeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC--eEEEE-----eecCccCeeEEEEecC
Q 003467 238 --IYRI--TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLLQA-----HSFHKGDVNALAAAPS 305 (817)
Q Consensus 238 --~~~~--~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~-----~~~h~~~v~~l~~s~~ 305 (817)
...+ .........+|+..|+++.|.|.+ .|++++.|.++.+|...+. --+.. ..+..+.....-|+|+
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n 327 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN 327 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence 0011 111112345899999999999999 8999999999999987654 22222 2233445788899999
Q ss_pred CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCC
Q 003467 306 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 385 (817)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (817)
++.+++-+..|..++|.... ...|.......+|...|+.++|. |.|.
T Consensus 328 ~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~~~iSGH~~~V~dv~W~---------psGe---------- 374 (764)
T KOG1063|consen 328 SNVIIAHGRTGGFHLWKTKD--------------KTFWTQEPVISGHVDGVKDVDWD---------PSGE---------- 374 (764)
T ss_pred CCEEEEecccCcEEEEeccC--------------ccceeeccccccccccceeeeec---------CCCC----------
Confidence 99999999999999998222 24688889999999999999998 7775
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC-CeEEEEEeCC-eEEEEEec
Q 003467 386 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-TSLLLVQYSC-RLDILSVR 463 (817)
Q Consensus 386 ~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~-~i~i~~~~ 463 (817)
+|++.|.|.+-+++-.-..+.. -+. ....+.+.--..++++-+ +-+++..++. -+++++..
T Consensus 375 --------------flLsvs~DQTTRlFa~wg~q~~-wHE--iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 375 --------------FLLSVSLDQTTRLFARWGRQQE-WHE--IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred --------------EEEEeccccceeeecccccccc-eee--ecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999999999999876521111 111 122223333455666666 5555555444 45555543
Q ss_pred ccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEE-EEEcCCc-------------eEEEEeecCCC--CCc
Q 003467 464 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF-AYSDHVK-------------PSLFELKKGKV--GQG 527 (817)
Q Consensus 464 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-a~~~~~~-------------i~l~~~~~~~~--~~~ 527 (817)
..-..... ..-|. .....-..+....+..+.+|.+.-+. .+.+.+. ..+..-...+. ...
T Consensus 438 k~fv~~l~-~i~g~---~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 438 KSFVKSLM-AICGK---CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred HHHHHHHH-HHhCc---cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 21000000 00000 00000001111223333333322221 1100000 00111000000 001
Q ss_pred eEEEeeecCCccccceeEEEEecCCCEEEEEecCC-----cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEc
Q 003467 528 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-----RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS 602 (817)
Q Consensus 528 ~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 602 (817)
+| ....++-+|.-.|.+++.+|+++++|+++... .|++|+..+...++.+.+ |.-.|+.|+||
T Consensus 514 Lw-PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-----------HsLTVT~l~FS 581 (764)
T KOG1063|consen 514 LW-PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-----------HSLTVTRLAFS 581 (764)
T ss_pred cc-hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-----------cceEEEEEEEC
Confidence 11 11245778888999999999999999997643 699999999988888888 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcce---EEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC--ccccchhc
Q 003467 603 SDGQWLAAVNCFGDVYIFNLEIQRQ---HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK--QLGEWSMQ 677 (817)
Q Consensus 603 ~dg~~la~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~--~~~~ws~~ 677 (817)
|||++|++++.|.++.+|+...... .......|..-|.++.|+| ++.++|+++.|.+|++|..... +.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~------ 654 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKY------ 654 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhh------
Confidence 9999999999999999998754322 1122456778899999999 9999999999999999999877 32
Q ss_pred ccCccCc-chhcCCCceeEEEECCCCCCCE--EEEE--cCceEEEEEcC
Q 003467 678 HTFVLPR-RYQEFPGEVIGLSFSPSPSSSS--VIIY--SARAMCVIDFG 721 (817)
Q Consensus 678 ~~~~~~~-~~~~~~~~v~~l~f~p~~~~~~--~~~~--~~~~~~~~d~~ 721 (817)
+++ ....+..+|++++|.|--..++ ++.. -...+++....
T Consensus 655 ----i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ----ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ----hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 122 4566789999999998532221 2333 33446655543
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=263.56 Aligned_cols=284 Identities=17% Similarity=0.303 Sum_probs=250.0
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... -..++.|| .++|..+.|.+|+.. |+++|.|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---N~~~lkgH-sgAVM~l~~~~d~s~------i~S~gtDk 112 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---NFWVLKGH-SGAVMELHGMRDGSH------ILSCGTDK 112 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---ceeeeccc-cceeEeeeeccCCCE------EEEecCCc
Confidence 479999999999999999999999999999999876554 34566677 899999999999987 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
+|+.||.++|++++.+++|..-|..+.-+.-|.
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~----------------------------------------------- 145 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP----------------------------------------------- 145 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCC-----------------------------------------------
Confidence 999999999999999999999999998554443
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.++.+++.|+++++||+...+.+ +++ ..+-.++++.|..++..+++|+-|+.|++||++.+.....+.
T Consensus 146 --~lv~SgsdD~t~kl~D~R~k~~~---~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls------ 213 (338)
T KOG0265|consen 146 --QLVCSGSDDGTLKLWDIRKKEAI---KTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS------ 213 (338)
T ss_pred --eEEEecCCCceEEEEeecccchh---hcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEee------
Confidence 38889999999999999865554 333 335689999999999999999999999999999999999998
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC----CeEEEEeecCcc----CeeEEEEecCCCEEEEEccCCcEE
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKG----DVNALAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~----~v~~l~~s~~~~~l~~~~~dg~i~ 319 (817)
+|...|..+..+++| .+++-+.|.++++||.+. .+++..+.+|.. ..+.++|+|+++.+-+|+.|..++
T Consensus 214 --Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 214 --GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred --cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 899999999999999 799999999999999985 345777776543 456789999999999999999999
Q ss_pred EEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCc
Q 003467 320 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 399 (817)
Q Consensus 320 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (817)
+||..... .+..+.+|...|.+++|. |.. +
T Consensus 292 vwd~~~r~-----------------~lyklpGh~gsvn~~~Fh---------p~e------------------------~ 321 (338)
T KOG0265|consen 292 VWDTTSRR-----------------ILYKLPGHYGSVNEVDFH---------PTE------------------------P 321 (338)
T ss_pred Eeeccccc-----------------EEEEcCCcceeEEEeeec---------CCC------------------------c
Confidence 99998877 788999999999999997 555 3
Q ss_pred EEEEecCCCeEEEE
Q 003467 400 MLISAGDDTKLFAY 413 (817)
Q Consensus 400 ~l~s~~~dg~i~~~ 413 (817)
+|.+++.|.+|++=
T Consensus 322 iils~~sdk~i~lg 335 (338)
T KOG0265|consen 322 IILSCSSDKTIYLG 335 (338)
T ss_pred EEEEeccCceeEee
Confidence 99999999999873
No 39
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=270.47 Aligned_cols=503 Identities=17% Similarity=0.169 Sum_probs=360.8
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-EEEEEeec-CceEEEEeeecCCCccceeeccCccccCcc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQSI-DFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 137 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (817)
...|++|||+.+.+. ||.+-.||.|-+|++..+= +...+.++ ...|.+++|++.+
T Consensus 25 Ps~I~slA~s~kS~~------lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~----------------- 81 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ------LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG----------------- 81 (691)
T ss_pred ccceEEEEEeccCCc------eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----------------
Confidence 578999999999876 9999999999999998754 33455544 4789999999776
Q ss_pred ccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCE
Q 003467 138 LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM 217 (817)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 217 (817)
+|.+.+.+|.|.-||+.+.+.. ..+....+.|++++.+|.++.
T Consensus 82 ----------------------------------RLFS~g~sg~i~EwDl~~lk~~---~~~d~~gg~IWsiai~p~~~~ 124 (691)
T KOG2048|consen 82 ----------------------------------RLFSSGLSGSITEWDLHTLKQK---YNIDSNGGAIWSIAINPENTI 124 (691)
T ss_pred ----------------------------------eEEeecCCceEEEEecccCcee---EEecCCCcceeEEEeCCccce
Confidence 9999999999999999987776 777778899999999999999
Q ss_pred EEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEEEeec----
Q 003467 218 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSF---- 292 (817)
Q Consensus 218 l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~---- 292 (817)
++.||.||.+..++...+......... ..++.|.++.|.+++. +++|+.||.|++||+.++..+.....
T Consensus 125 l~IgcddGvl~~~s~~p~~I~~~r~l~------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~ 198 (691)
T KOG2048|consen 125 LAIGCDDGVLYDFSIGPDKITYKRSLM------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR 198 (691)
T ss_pred EEeecCCceEEEEecCCceEEEEeecc------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence 999999998888888888776666542 4668999999999995 99999999999999999887763221
Q ss_pred ----CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCC
Q 003467 293 ----HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 368 (817)
Q Consensus 293 ----h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 368 (817)
...-|.++.|-.++ .|++|...|+|.+||...+. ++.....|..+|.+|+..
T Consensus 199 l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT-----------------LiqS~~~h~adVl~Lav~------ 254 (691)
T KOG2048|consen 199 LSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT-----------------LIQSHSCHDADVLALAVA------ 254 (691)
T ss_pred cccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-----------------hhhhhhhhhcceeEEEEc------
Confidence 22346677777665 59999999999999999988 788899999999999996
Q ss_pred CCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeE
Q 003467 369 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL 448 (817)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 448 (817)
+++ ++++++|.|+.+..|...+.... -....+...+..-+.+++..++
T Consensus 255 ---~~~------------------------d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 255 ---DNE------------------------DRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred ---CCC------------------------CeEEEccCCCceEEEEecCCccc---eeeeccccCCcccceeeeeecc--
Confidence 444 49999999999999988775431 1112233344455556666655
Q ss_pred EEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCC----
Q 003467 449 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV---- 524 (817)
Q Consensus 449 ~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~---- 524 (817)
.+..+.....+.-........ .. .......+. . .-+...+..+++..-....+.+|.+...-.
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~-----~~-----h~~~~~~p~-~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKN-----MD-----HRQKNLFPA-S--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred eEEecceeeEEEEccccccCc-----hh-----hhccccccc-c--ceeecCccceEEEEeccccccceeccCccccccc
Confidence 444443333333322211000 00 000000000 1 112334555555556677888888765211
Q ss_pred -CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEcc
Q 003467 525 -GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 603 (817)
Q Consensus 525 -~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 603 (817)
...++. ..++. ...|.+.+.||||++++.+.- ..++||.+.....+..... +..+...-..+.+.|+-
T Consensus 370 ~~~~Llk---l~~k~-~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v------~~~~~~~~~a~~i~fti 438 (691)
T KOG2048|consen 370 NYIHLLK---LFTKE-KENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINV------DDVPLALLDASAISFTI 438 (691)
T ss_pred Chhhhee---eecCC-ccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEe------ccchhhhccceeeEEEe
Confidence 112211 11222 236899999999999998874 3588888864222211111 00111345678889999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCcceEEEE---ecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhccc
Q 003467 604 DGQWLAAVN-CFGDVYIFNLEIQRQHWFI---SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHT 679 (817)
Q Consensus 604 dg~~la~~~-~dg~i~vwd~~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~ 679 (817)
|+..++.++ ....+.++++++....... +......|+.+.-|| +|++||+.+.++.|++|++++++...
T Consensus 439 d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~------ 511 (691)
T KOG2048|consen 439 DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHL------ 511 (691)
T ss_pred cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeec------
Confidence 999888888 7778889988776543222 222336899999999 99999999999999999999998621
Q ss_pred CccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEc
Q 003467 680 FVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 720 (817)
Q Consensus 680 ~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~ 720 (817)
.....+..|++.+|+|...+..++.++++.++-+|+
T Consensus 512 -----l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 512 -----LKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred -----chhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 122445789999999876777889999999999998
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-34 Score=263.38 Aligned_cols=332 Identities=15% Similarity=0.206 Sum_probs=265.7
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
..|..|++.|.+++.+|+.++++||+.|..-.+|++.+|.....+. +|...|.++.|+.|| +|++|+.+|.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt--------gHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT--------GHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec--------CCCCceEEEEEccCceEEEecCCCcc
Confidence 7889999999999999999999999999999999999999888888 899999999999999 7999999999
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
|+||+..++.....+......|.-+.|+|.+..|++|+.||.+.+|.+.++. ..+.+.+|+.+
T Consensus 130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----------------~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----------------LCKVMSGHNSP 192 (399)
T ss_pred EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-----------------eeeEecCCCCC
Confidence 9999999999998887777899999999999999999999999999999875 67889999999
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCce
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 435 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (817)
+++=.|. |+|| .++++..||+|++|++.+...+....
T Consensus 193 ct~G~f~---------pdGK------------------------r~~tgy~dgti~~Wn~ktg~p~~~~~---------- 229 (399)
T KOG0296|consen 193 CTCGEFI---------PDGK------------------------RILTGYDDGTIIVWNPKTGQPLHKIT---------- 229 (399)
T ss_pred ccccccc---------CCCc------------------------eEEEEecCceEEEEecCCCceeEEec----------
Confidence 9998887 8998 99999999999999998865332111
Q ss_pred eeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCce
Q 003467 436 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKP 514 (817)
Q Consensus 436 ~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i 514 (817)
........++.++.++..+..+ .++.+
T Consensus 230 ----------------------------------------------------~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 230 ----------------------------------------------------QAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ----------------------------------------------------ccccCcCCccccccccceeEeccCCccE
Confidence 0001222333333333333332 22222
Q ss_pred EEEEeecCCCCCceEEEee----ecCCcccc---ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccc
Q 003467 515 SLFELKKGKVGQGEWIINK----RQLPRKLQ---FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR 587 (817)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~----~~~~~~~~---~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~ 587 (817)
++-+... + ++..... ...+.+.. .|..+.++.+-.+.|+|+-||+|.|||+...++.+.+.
T Consensus 258 ~~~~~~s---g-KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-------- 325 (399)
T KOG0296|consen 258 CGVNNGS---G-KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-------- 325 (399)
T ss_pred EEEcccc---c-eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--------
Confidence 2222111 0 1100000 01122222 44455556667788999999999999999888877777
Q ss_pred cCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 588 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 588 ~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
|...|+.+.|-+ ..+|++++.+|.|+.||..+|++.... ..|...|.+++.+| +.+++++++.|++.+||++.
T Consensus 326 ----he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 326 ----HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ----CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE-ecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 889999999988 789999999999999999999988777 55778999999999 99999999999999999875
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=272.42 Aligned_cols=305 Identities=18% Similarity=0.232 Sum_probs=259.5
Q ss_pred eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC
Q 003467 99 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 178 (817)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (817)
...+.+.+|..+|+.+-|+|+- ..++++++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--------------------------------------------------~~v~~as~ 128 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--------------------------------------------------ALVVSASE 128 (406)
T ss_pred CchhhhhccccceeeeeeccCc--------------------------------------------------eEEEEecC
Confidence 4456777899999999999987 38889999
Q ss_pred CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCceeEE
Q 003467 179 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIW 257 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~v~ 257 (817)
|++|++||..+++.. +.+++|+..|..++|+..|++|++++.|=.+.+||..+ -+++..+. +|+..|.
T Consensus 129 d~tikv~D~~tg~~e---~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~--------gh~h~vS 197 (406)
T KOG0295|consen 129 DATIKVFDTETGELE---RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI--------GHEHGVS 197 (406)
T ss_pred CceEEEEEccchhhh---hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc--------Cccccee
Confidence 999999999987764 99999999999999999999999999998899999876 45555555 7999999
Q ss_pred EeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCC
Q 003467 258 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS 336 (817)
Q Consensus 258 ~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 336 (817)
+++|.|.| .+++++.|.+|+.|+..+|-++.++.+|...|..++.+.||..+++++.|.++++|-+.+++
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--------- 268 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--------- 268 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 337 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 337 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
+...++.|.+.|.+++|. |+...-.+... .-...+++++.+++.|++|++||+.
T Consensus 269 --------~k~~lR~hEh~vEci~wa---------p~~~~~~i~~a---------t~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 269 --------CKAELREHEHPVECIAWA---------PESSYPSISEA---------TGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred --------hhhhhhccccceEEEEec---------ccccCcchhhc---------cCCCCCccEEEeecccceEEEEecc
Confidence 667899999999999997 33210000000 0001123466666666666666665
Q ss_pred cccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEE
Q 003467 417 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 496 (817)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~ 496 (817)
+
T Consensus 323 t------------------------------------------------------------------------------- 323 (406)
T KOG0295|consen 323 T------------------------------------------------------------------------------- 323 (406)
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred EEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceee
Q 003467 497 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH 576 (817)
Q Consensus 497 ~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~ 576 (817)
+..+ .++.+|...|+.++|+|.|+||+++.+|+++++||+.++++.+
T Consensus 324 ----------------------------g~cL-----~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 324 ----------------------------GMCL-----FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ----------------------------CeEE-----EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 2233 3456778899999999999999999999999999999999999
Q ss_pred eeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 577 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
++.. |..-+++++|..+..++++|+-|..+++|..
T Consensus 371 ~~~a-----------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCC-----------CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9998 8999999999999999999999999999963
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.7e-37 Score=284.83 Aligned_cols=284 Identities=21% Similarity=0.349 Sum_probs=247.7
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
..+|..+.|.|+|++|++|+..|.+.+||..+-. .+..++.| ...|+++.|+++|.+ ++||+.+|.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn----FEtilQaH-Ds~Vr~m~ws~~g~w------miSgD~gG~iKy 164 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN----FETILQAH-DSPVRTMKWSHNGTW------MISGDKGGMIKY 164 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee----HHHHhhhh-cccceeEEEccCCCE------EEEcCCCceEEe
Confidence 3578999999999999999999999999985433 34455666 899999999999999 999999999999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
|+.+-.........|...|.+++|+|.. ..
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnD--------------------------------------------------sk 194 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPND--------------------------------------------------SK 194 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCC--------------------------------------------------ce
Confidence 9987655444444455999999999966 38
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCC
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 252 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~ 252 (817)
++++++||+|+|||.....+- +.+.+|.-.|.|++|+|....|++|+.|..|++||.++|+++.++. +|
T Consensus 195 F~t~SdDg~ikiWdf~~~kee---~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh--------~H 263 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKEE---RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH--------GH 263 (464)
T ss_pred eEEecCCCeEEEEeccCCchh---heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh--------hc
Confidence 999999999999999855554 7789999999999999999999999999999999999999999998 79
Q ss_pred ceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeecccCCC
Q 003467 253 ELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGP 330 (817)
Q Consensus 253 ~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 330 (817)
...|..+.|.+++ .|++++.|..++++|+++.+.++++++|...|.+++|+|-. ..+.+|+.||.|..|.+.....
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p-- 341 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP-- 341 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--
Confidence 9999999999999 89999999999999999999999999999999999999954 5666788999999999984431
Q ss_pred CCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeE
Q 003467 331 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 410 (817)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 410 (817)
....-..|...|.+|++. |-|. +|++|+.|.++
T Consensus 342 --------------~~~i~~AHd~~iwsl~~h---------PlGh------------------------il~tgsnd~t~ 374 (464)
T KOG0284|consen 342 --------------LGEIPPAHDGEIWSLAYH---------PLGH------------------------ILATGSNDRTV 374 (464)
T ss_pred --------------ccCCCcccccceeeeecc---------ccce------------------------eEeecCCCcce
Confidence 223447899999999998 7775 99999999999
Q ss_pred EEEeCCc
Q 003467 411 FAYCANE 417 (817)
Q Consensus 411 ~~~~~~~ 417 (817)
++|.-..
T Consensus 375 rfw~r~r 381 (464)
T KOG0284|consen 375 RFWTRNR 381 (464)
T ss_pred eeeccCC
Confidence 9997653
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=280.96 Aligned_cols=436 Identities=17% Similarity=0.210 Sum_probs=324.6
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
..+|.+++|+|...+ ++++-..|.|.+||..-+.++..++.|.++|..++|+|.+
T Consensus 9 SsRvKglsFHP~rPw------ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q------------------- 63 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW------ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ------------------- 63 (1202)
T ss_pred cccccceecCCCCCE------EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-------------------
Confidence 678999999999998 9999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 219 (817)
+++++|++|..|++|+..+.+.+ .++.+|-.-|..+.|++.-.+|+
T Consensus 64 -------------------------------plFVSGGDDykIkVWnYk~rrcl---ftL~GHlDYVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 64 -------------------------------PLFVSGGDDYKIKVWNYKTRRCL---FTLLGHLDYVRTVFFHHEYPWIL 109 (1202)
T ss_pred -------------------------------CeEEecCCccEEEEEecccceeh---hhhccccceeEEeeccCCCceEE
Confidence 59999999999999999877776 89999999999999999999999
Q ss_pred EeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC--------C------
Q 003467 220 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------G------ 284 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~--------~------ 284 (817)
++|.|.+|+|||+++++++..++ +|...|.|..|+|.. .+++++-|.+|++||+.- +
T Consensus 110 SASDDQTIrIWNwqsr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~ 181 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQM 181 (1202)
T ss_pred EccCCCeEEEEeccCCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhh
Confidence 99999999999999999999999 899999999999955 899999999999999852 1
Q ss_pred ---------------eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc
Q 003467 285 ---------------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 349 (817)
Q Consensus 285 ---------------~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (817)
-..+.+.+|...|+.++|+|.-..+++|+.|+.|++|.++..+ .| .+.+.
T Consensus 182 ~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--------------aW-EvDtc 246 (1202)
T KOG0292|consen 182 RGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--------------AW-EVDTC 246 (1202)
T ss_pred hccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--------------ce-eehhh
Confidence 0124467899999999999999999999999999999997654 46 57789
Q ss_pred ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCC
Q 003467 350 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 429 (817)
Q Consensus 350 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~ 429 (817)
++|.+.|.++-|. |.. ++++|.|+|+.|++||+...+..+.+
T Consensus 247 rgH~nnVssvlfh---------p~q------------------------~lIlSnsEDksirVwDm~kRt~v~tf----- 288 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFH---------PHQ------------------------DLILSNSEDKSIRVWDMTKRTSVQTF----- 288 (1202)
T ss_pred hcccCCcceEEec---------Ccc------------------------ceeEecCCCccEEEEecccccceeee-----
Confidence 9999999999996 443 49999999999999999864422111
Q ss_pred CCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE
Q 003467 430 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS 509 (817)
Q Consensus 430 ~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~ 509 (817)
....++..+++..|..+++|++
T Consensus 289 ----------------------------------------------------------rrendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 289 ----------------------------------------------------------RRENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred ----------------------------------------------------------eccCCeEEEEEecCCcceeeee
Confidence 0112667888999999999999
Q ss_pred cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCce--eeeeccCcccccc
Q 003467 510 DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDR 587 (817)
Q Consensus 510 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~ 587 (817)
.|+.+.+|.++. .. ++. +. .++.|...- |..|+-+|+.+.+- +..++...
T Consensus 311 HDsGm~VFkleR---Er---------------pa~--~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g----- 362 (1202)
T KOG0292|consen 311 HDSGMIVFKLER---ER---------------PAY--AV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPG----- 362 (1202)
T ss_pred cCCceEEEEEcc---cC---------------ceE--EE--cCCEEEEEc-cceEEeeeccccccceeEeccCCC-----
Confidence 999888998864 11 122 22 244444444 88899999987543 33344311
Q ss_pred cCCCCCCceeEEEEccCCCEE-EEEeCC-CcEEEEECCCcceEEEE-e-cCCCCCeEEEEecCCCCCeEEEEecCCeEEE
Q 003467 588 EIQPSEPPITKMFTSSDGQWL-AAVNCF-GDVYIFNLEIQRQHWFI-S-RLEGASVTAAGFPPQNNNVLIITTSSNQVYV 663 (817)
Q Consensus 588 ~~~~~~~~i~~l~~s~dg~~l-a~~~~d-g~i~vwd~~~~~~~~~~-~-~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~v 663 (817)
....++.+|.++|-...+ ++.+.| |.-.++.+.....-..- + ...+....+ .|-. .+.+.+.--.+.++.+
T Consensus 363 ---~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a-~fva-rNrfavl~k~~~~v~i 437 (1202)
T KOG0292|consen 363 ---TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGA-LFVA-RNRFAVLDKSNEQVVI 437 (1202)
T ss_pred ---cccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCce-EEEE-ecceEEEEecCcceEE
Confidence 134678899999976644 443333 33444444322100000 0 001112222 2332 2223222233555655
Q ss_pred EEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 664 FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 664 wd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
=++.+... +.+. ....+..|.+.-.|+ +++.+...+.++|+.|
T Consensus 438 k~l~N~vt------------kkl~-~~~~~~~IF~ag~g~---lll~~~~~v~lfdvQq 480 (1202)
T KOG0292|consen 438 KNLKNKVT------------KKLL-LPESTDDIFYAGTGN---LLLRSPDSVTLFDVQQ 480 (1202)
T ss_pred ecccchhh------------hccc-CcccccceeeccCcc---EEEEcCCeEEEEEeec
Confidence 55555432 1111 123456666665544 8888999999999876
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5e-36 Score=273.45 Aligned_cols=285 Identities=17% Similarity=0.253 Sum_probs=247.7
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
....|.|+.+- ...+++|..|++|.|||..+.. |...+.|| .++|.||.|... . |++|+.|.+|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~----c~~~L~GH-tGSVLCLqyd~r--v------iisGSSDsTvr 260 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE----CLKILTGH-TGSVLCLQYDER--V------IVSGSSDSTVR 260 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH----HHHhhhcC-CCcEEeeeccce--E------EEecCCCceEE
Confidence 44678888884 5679999999999999998876 78899998 899999998643 4 99999999999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+||+++|+++.++-+|...|..+.|+. .
T Consensus 261 vWDv~tge~l~tlihHceaVLhlrf~n----------------------------------------------------g 288 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVLHLRFSN----------------------------------------------------G 288 (499)
T ss_pred EEeccCCchhhHHhhhcceeEEEEEeC----------------------------------------------------C
Confidence 999999999999999999999999985 2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
++++++.|.++.+||+.....+...+.+.||...|..+.|+ .+++++++.|.+|++|+..+++.++.+. +
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~--------g 358 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN--------G 358 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh--------c
Confidence 99999999999999998776766678899999999999996 5699999999999999999999999998 7
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCC
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN 331 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 331 (817)
|...|-|+.+. +..+++|++|.+|++||++.|.++..+.+|..-|.|+.|. .+.+++|+.||+|++||+..+.....
T Consensus 359 HkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 359 HKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccccceehhcc-CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc
Confidence 99999888773 4478999999999999999999999999999999999995 67899999999999999987653211
Q ss_pred CCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEE
Q 003467 332 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 411 (817)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 411 (817)
...-.++.++..|++.|..+.|. . -.+++++.|.+|.
T Consensus 436 --------~~~~~Cl~~lv~hsgRVFrLQFD-----------~------------------------fqIvsssHddtIL 472 (499)
T KOG0281|consen 436 --------PASTLCLRTLVEHSGRVFRLQFD-----------E------------------------FQIISSSHDDTIL 472 (499)
T ss_pred --------cccchHHHhhhhccceeEEEeec-----------c------------------------eEEEeccCCCeEE
Confidence 11112566778899999999983 2 2799999999999
Q ss_pred EEeCCccc
Q 003467 412 AYCANEFT 419 (817)
Q Consensus 412 ~~~~~~~~ 419 (817)
+||..++.
T Consensus 473 iWdFl~~~ 480 (499)
T KOG0281|consen 473 IWDFLNGP 480 (499)
T ss_pred EEEcCCCC
Confidence 99997754
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.2e-34 Score=254.72 Aligned_cols=296 Identities=17% Similarity=0.268 Sum_probs=250.5
Q ss_pred EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC
Q 003467 100 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 179 (817)
Q Consensus 100 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 179 (817)
++..+.+|.+.|+.+.|+|+| ..+|+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~g--------------------------------------------------s~~aSgG~D 68 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG--------------------------------------------------SCFASGGSD 68 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC--------------------------------------------------CeEeecCCc
Confidence 446678999999999999998 499999999
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEe
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 259 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v 259 (817)
..|.+|+.... ..-...+++|++.|..+.|.+|+..|++++.|.+|+.||+++|+.++++. .|...|+++
T Consensus 69 r~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--------~h~~~vNs~ 138 (338)
T KOG0265|consen 69 RAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--------GHTSFVNSL 138 (338)
T ss_pred ceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--------cccceeeec
Confidence 99999997522 22237788999999999999999999999999999999999999999998 799999999
Q ss_pred EEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCc
Q 003467 260 LSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 260 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
..+.-| .+.+++.||++++||.++...++++.. .-.+++++|..++..+++|+-|+.|++||+....
T Consensus 139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---------- 207 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---------- 207 (338)
T ss_pred CccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc----------
Confidence 966666 578899999999999999888888854 5689999999999999999999999999998877
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
....+.+|...|..+..+ ++|. ++.+-+.|.++++||.+.
T Consensus 208 -------~~~~lsGh~DtIt~lsls---------~~gs------------------------~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 208 -------GLYTLSGHADTITGLSLS---------RYGS------------------------FLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -------ceEEeecccCceeeEEec---------cCCC------------------------ccccccccceEEEEEecc
Confidence 788999999999999998 7776 999999999999999976
Q ss_pred ccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEE
Q 003467 418 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 497 (817)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 497 (817)
+..- .+ .+.|+.
T Consensus 248 ~~p~-------------------------~R-------~v~if~------------------------------------ 259 (338)
T KOG0265|consen 248 FAPS-------------------------QR-------CVKIFQ------------------------------------ 259 (338)
T ss_pred cCCC-------------------------Cc-------eEEEee------------------------------------
Confidence 4310 00 001000
Q ss_pred EecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeee
Q 003467 498 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT 577 (817)
Q Consensus 498 ~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~ 577 (817)
+.. ..+. ......+|||+++.+.+|+.|..+++||..+...+..
T Consensus 260 -----------g~~----------------------hnfe---knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 260 -----------GHI----------------------HNFE---KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred -----------cch----------------------hhhh---hhcceeeccCCCCccccccccceEEEeecccccEEEE
Confidence 000 0000 0234567999999999999999999999888889999
Q ss_pred eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 578 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
+++ |.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 304 lpG-----------h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 304 LPG-----------HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCC-----------cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999 999999999999999999999999998743
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=270.25 Aligned_cols=291 Identities=19% Similarity=0.278 Sum_probs=248.4
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
..+..|.+.|.-+.||++|+|||+|+.|.+..||++..... ..+.+++.|| ..+|..+.||||+++ |++++.
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh-~~~V~yi~wSPDdry------LlaCg~ 289 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGH-SQPVSYIMWSPDDRY------LLACGF 289 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecc-cCceEEEEECCCCCe------EEecCc
Confidence 34678999999999999999999999999999999876543 4568899998 689999999999999 999999
Q ss_pred CCeEEEEECCCCeEEEEEe-ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
|..+.+||+.+|.+...+. +++..+.+++|.|||
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg--------------------------------------------- 324 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG--------------------------------------------- 324 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCC---------------------------------------------
Confidence 9999999999999887776 357899999999999
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
..+++|+.|+.+..||+. ++.+ ....+.. ..|.+++.++||+++++.+.|..|++++.++......+.
T Consensus 325 -----~~~V~Gs~dr~i~~wdlD-gn~~---~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-- 393 (519)
T KOG0293|consen 325 -----FRFVTGSPDRTIIMWDLD-GNIL---GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-- 393 (519)
T ss_pred -----ceeEecCCCCcEEEecCC-cchh---hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc--
Confidence 489999999999999997 4333 3333322 469999999999999999999999999988766655443
Q ss_pred cCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccC--eeEEEEe-cCCCEEEEEccCCcEEE
Q 003467 245 LGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD--VNALAAA-PSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~s-~~~~~l~~~~~dg~i~i 320 (817)
.+.+|.++..+.|+ .+++.-.+..+.+||++....++.+.+|... +-.-||. .+..++++|+.|+.|++
T Consensus 394 -------e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 394 -------EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred -------ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 67889999999999 5666777889999999999999999998765 3333443 35589999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
|+..++. ++..+.+|...|++++++ |... .+
T Consensus 467 Whr~sgk-----------------ll~~LsGHs~~vNcVswN---------P~~p-----------------------~m 497 (519)
T KOG0293|consen 467 WHRISGK-----------------LLAVLSGHSKTVNCVSWN---------PADP-----------------------EM 497 (519)
T ss_pred EEccCCc-----------------eeEeecCCcceeeEEecC---------CCCH-----------------------HH
Confidence 9999998 899999999999999997 4433 59
Q ss_pred EEEecCCCeEEEEeCCc
Q 003467 401 LISAGDDTKLFAYCANE 417 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~ 417 (817)
++|++.||+|++|-...
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 99999999999998764
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=299.51 Aligned_cols=287 Identities=25% Similarity=0.386 Sum_probs=249.5
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
..|...|+++.|||+|++||+++.++.|++|+....+. .....+.+| ...|.+++|+|++++ |++++.|++
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h-~~~v~~~~fs~d~~~------l~s~s~D~t 226 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGH-TRGVSDVAFSPDGSY------LLSGSDDKT 226 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhcccccc-ccceeeeEECCCCcE------EEEecCCce
Confidence 34478999999999999999999999999999966552 235555666 899999999999998 999999999
Q ss_pred EEEEEC-CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 90 VSEWDL-YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 90 i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
|++||+ ..+.+++++.+|...|++++|+|++
T Consensus 227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g------------------------------------------------ 258 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG------------------------------------------------ 258 (456)
T ss_pred EEEeeccCCCeEEEEecCCCCceEEEEecCCC------------------------------------------------
Confidence 999999 6679999999999999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc--eEEEEEeecC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLG 246 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~--~~~~~~~~~~ 246 (817)
+++++|+.|++|+|||+.++... +.+.+|.+.|++++|++++.+|++++.|+.|++||+.++. +...+.
T Consensus 259 --~~i~Sgs~D~tvriWd~~~~~~~---~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---- 329 (456)
T KOG0266|consen 259 --NLLVSGSDDGTVRIWDVRTGECV---RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS---- 329 (456)
T ss_pred --CEEEEecCCCcEEEEeccCCeEE---EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc----
Confidence 49999999999999999986665 8999999999999999999999999999999999999998 445554
Q ss_pred CCCCCCce--eEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCee---EEEEecCCCEEEEEccCCcEEE
Q 003467 247 GLGSGPEL--CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN---ALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 247 ~~~~~~~~--~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~l~~s~~~~~l~~~~~dg~i~i 320 (817)
.++. +++++.|+|++ .++++..|+.+++||+..+..+..+.+|...+. +...++.+.++++|+.|+.|.+
T Consensus 330 ----~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 330 ----GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred ----CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 2222 69999999999 799999999999999999999999999887643 3445778999999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccC-CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCc
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAH-THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP 399 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (817)
|+..++. .+..+.+| ...+..+.+. |.. +
T Consensus 406 ~~~~s~~-----------------~~~~l~~h~~~~~~~~~~~---------~~~------------------------~ 435 (456)
T KOG0266|consen 406 WDSSSGG-----------------ILQRLEGHSKAAVSDLSSH---------PTE------------------------N 435 (456)
T ss_pred EeCCccc-----------------hhhhhcCCCCCceeccccC---------CCc------------------------C
Confidence 9999876 67788889 7777888776 443 3
Q ss_pred EEEEec--CCCeEEEEeCC
Q 003467 400 MLISAG--DDTKLFAYCAN 416 (817)
Q Consensus 400 ~l~s~~--~dg~i~~~~~~ 416 (817)
++++++ .|+.+++|...
T Consensus 436 ~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeeecCcCCCceEEEecCC
Confidence 888888 68899999754
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-32 Score=243.99 Aligned_cols=298 Identities=19% Similarity=0.262 Sum_probs=240.6
Q ss_pred eEEEEEeecCceEEEEeeecC-CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 99 KQKIVLQSIDFSIWQMAVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
..++.+.+|.+++|.++|+|- | ..||+++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g--------------------------------------------------~ilAscg 34 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG--------------------------------------------------VILASCG 34 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc--------------------------------------------------eEEEeec
Confidence 346788899999999999998 5 4899999
Q ss_pred CCCcEEEEEecCCCceeEeecc-CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC--ceEEEEEeecCCCCCCCce
Q 003467 178 DDGCVRIYRITDSDELIYHRSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPEL 254 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~ 254 (817)
.|..|+||+...+........+ .+|+..|++++|+|.|++|++++.|.++.||.-..+ +++..+. +|+.
T Consensus 35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--------GHEn 106 (312)
T KOG0645|consen 35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE--------GHEN 106 (312)
T ss_pred CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee--------cccc
Confidence 9999999999855555554444 379999999999999999999999999999986654 4555555 8999
Q ss_pred eEEEeEEecCC-eEEEEcCCCcEEEEeCCC---CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCC
Q 003467 255 CIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 330 (817)
Q Consensus 255 ~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (817)
.|-+++|+++| +|++++.|+.|.||.+.. ..++..++.|..+|..+.|+|....|++++.|.+|++|+....
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d---- 182 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD---- 182 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC----
Confidence 99999999999 799999999999999874 4567889999999999999999999999999999999987642
Q ss_pred CCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeE
Q 003467 331 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 410 (817)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 410 (817)
..|.++.++.+|...|.+++|. +.|. .|++++.|+++
T Consensus 183 ----------ddW~c~~tl~g~~~TVW~~~F~---------~~G~------------------------rl~s~sdD~tv 219 (312)
T KOG0645|consen 183 ----------DDWECVQTLDGHENTVWSLAFD---------NIGS------------------------RLVSCSDDGTV 219 (312)
T ss_pred ----------CCeeEEEEecCccceEEEEEec---------CCCc------------------------eEEEecCCcce
Confidence 4699999999999999999997 6664 99999999999
Q ss_pred EEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecC
Q 003467 411 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 490 (817)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 490 (817)
++|..... +...+
T Consensus 220 ~Iw~~~~~-------------------------------------------------------------------~~~~~ 232 (312)
T KOG0645|consen 220 SIWRLYTD-------------------------------------------------------------------LSGMH 232 (312)
T ss_pred EeeeeccC-------------------------------------------------------------------cchhc
Confidence 99975421 01111
Q ss_pred CCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC-CCEEEEEecCCcEEEEEc
Q 003467 491 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDV 569 (817)
Q Consensus 491 ~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-~~~l~~~~~dg~i~v~d~ 569 (817)
...+..+++. +|.+...+.|+.|++|.-.. ......|.+-...-..|...|++++|.|. .++|++++.||.|++|.+
T Consensus 233 sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 233 SRALYDVPWD-NGVIASGGGDDAIRLFKESD-SPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ccceEeeeec-ccceEeccCCCEEEEEEecC-CCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 2445566666 44443446889999998774 22223333333334556668999999995 789999999999999987
Q ss_pred c
Q 003467 570 S 570 (817)
Q Consensus 570 ~ 570 (817)
.
T Consensus 311 ~ 311 (312)
T KOG0645|consen 311 E 311 (312)
T ss_pred c
Confidence 4
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=265.25 Aligned_cols=287 Identities=20% Similarity=0.289 Sum_probs=254.2
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCC----cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSG----WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
+..+-+.|..|||||+||++|+.||-|++||+.+|+.. +...-.+.-+ ..+|.|+.||.|... ||+|+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMm-d~aVlci~FSRDsEM------lAsGsq 283 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMM-DDAVLCISFSRDSEM------LASGSQ 283 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeec-ccceEEEeecccHHH------hhccCc
Confidence 55678899999999999999999999999999998741 1111222223 679999999999988 999999
Q ss_pred CCeEEEEECCCCeEEEEEe-ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
||.|++|.+.+|.|++.++ .|...|+|+.|+.|+
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~--------------------------------------------- 318 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN--------------------------------------------- 318 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---------------------------------------------
Confidence 9999999999999999998 899999999999998
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
..+++++.|.+++|--+..++.+ +.+++|..-|+...|++||.+++++++||+|++|+..+++++.++...
T Consensus 319 -----SqiLS~sfD~tvRiHGlKSGK~L---KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~- 389 (508)
T KOG0275|consen 319 -----SQILSASFDQTVRIHGLKSGKCL---KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL- 389 (508)
T ss_pred -----chhhcccccceEEEeccccchhH---HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-
Confidence 38899999999999999988888 999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeec---CccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
+....|.++-..|.+ .++.+....+|.|-++. |+.++++.. ..++..+.+.+|.|.++++.+.|+.++.
T Consensus 390 -----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYC 463 (508)
T KOG0275|consen 390 -----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYC 463 (508)
T ss_pred -----CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEE
Confidence 577889999998887 78899999999999997 888888864 3467788899999999999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
|...++. +-.++..|..+|..++-. |.. +.
T Consensus 464 F~~~sG~-----------------LE~tl~VhEkdvIGl~HH---------PHq------------------------Nl 493 (508)
T KOG0275|consen 464 FSVLSGK-----------------LERTLPVHEKDVIGLTHH---------PHQ------------------------NL 493 (508)
T ss_pred EEeecCc-----------------eeeeeecccccccccccC---------ccc------------------------ch
Confidence 9999988 677889999999998875 333 59
Q ss_pred EEEecCCCeEEEEe
Q 003467 401 LISAGDDTKLFAYC 414 (817)
Q Consensus 401 l~s~~~dg~i~~~~ 414 (817)
|++-++||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=243.79 Aligned_cols=268 Identities=19% Similarity=0.206 Sum_probs=236.8
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
-|.+.++.|.++|.++.|+-||+|..+++.|.+|++||+..+. +.+++.|| ...|..++.+.|+.. +++
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----liktYsgh-G~EVlD~~~s~Dnsk------f~s 76 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----LIKTYSGH-GHEVLDAALSSDNSK------FAS 76 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----eeeeecCC-Cceeeeccccccccc------ccc
Confidence 3667889999999999999999999999999999999999987 79999998 889999999999887 999
Q ss_pred eeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 84 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
++.|..|.+||+++|+.++.+.+|.+.|..++|+.+.
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees------------------------------------------- 113 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES------------------------------------------- 113 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-------------------------------------------
Confidence 9999999999999999999999999999999999987
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
..+++|+.|..+++||.... .....+.+......|.++..+ +..|++|+.||++|.||++.|+.....
T Consensus 114 -------SVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-- 181 (307)
T KOG0316|consen 114 -------SVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-- 181 (307)
T ss_pred -------eEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh--
Confidence 48999999999999999843 344457888888899999986 578999999999999999999876544
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCee--EEEEecCCCEEEEEccCCcEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN--ALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~~~~~dg~i~i 320 (817)
...+|+++.|++|+ ..++++.++++++.|-.+|++++.+++|...-. .++++.....+++|+.||.|.+
T Consensus 182 --------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 182 --------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF 253 (307)
T ss_pred --------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEE
Confidence 45689999999999 578889999999999999999999999986543 4567777789999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCc-cceeEee
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD-VRALTVA 362 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~ 362 (817)
||+.... .+..+..+... |..+++.
T Consensus 254 wdLvd~~-----------------~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 254 WDLVDET-----------------QISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred EEeccce-----------------eeeeeccCCceeEEeeecc
Confidence 9999887 56667777665 6777775
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.7e-35 Score=273.33 Aligned_cols=283 Identities=18% Similarity=0.286 Sum_probs=247.3
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
+..|..|.|.|+|+. |++|+..|.+.+|+..+-.-...++.|..+|.+|.|++++
T Consensus 96 kc~V~~v~WtPeGRR------Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g------------------- 150 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRR------LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG------------------- 150 (464)
T ss_pred ccceeeEEEcCCCce------eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-------------------
Confidence 578999999999976 9999999999999987665556678899999999999999
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNML 218 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l 218 (817)
..+++|..+|.|++|+..-... +.+.+|. ..|++++|+|+...+
T Consensus 151 -------------------------------~wmiSgD~gG~iKyWqpnmnnV----k~~~ahh~eaIRdlafSpnDskF 195 (464)
T KOG0284|consen 151 -------------------------------TWMISGDKGGMIKYWQPNMNNV----KIIQAHHAEAIRDLAFSPNDSKF 195 (464)
T ss_pred -------------------------------CEEEEcCCCceEEecccchhhh----HHhhHhhhhhhheeccCCCCcee
Confidence 5999999999999999863332 5556555 899999999999999
Q ss_pred EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCe
Q 003467 219 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 297 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v 297 (817)
++++.||+|+|||....+....+. +|...|.++.|.|.. .+++++.|..|++||.++|+++.++..|...|
T Consensus 196 ~t~SdDg~ikiWdf~~~kee~vL~--------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 196 LTCSDDGTIKIWDFRMPKEERVLR--------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred EEecCCCeEEEEeccCCchhheec--------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 999999999999999888888886 899999999999976 89999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
..+.|++++++|+++|.|..+++||+.+.+ .+..+++|..+|+++++. |-..
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----------------El~~~r~Hkkdv~~~~Wh---------P~~~-- 319 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----------------ELFTYRGHKKDVTSLTWH---------PLNE-- 319 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhH-----------------HHHHhhcchhhheeeccc---------cccc--
Confidence 999999999999999999999999999776 678899999999999997 4332
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeE
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i 457 (817)
.+|.+||.||.|..|.+....
T Consensus 320 ---------------------~lftsgg~Dgsvvh~~v~~~~-------------------------------------- 340 (464)
T KOG0284|consen 320 ---------------------SLFTSGGSDGSVVHWVVGLEE-------------------------------------- 340 (464)
T ss_pred ---------------------cceeeccCCCceEEEeccccc--------------------------------------
Confidence 599999999999999876221
Q ss_pred EEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeec
Q 003467 458 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK 521 (817)
Q Consensus 458 ~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~ 521 (817)
.+..+...+...|.+++++|=|.+|+++ .|.++++|.-..
T Consensus 341 ------------------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 341 ------------------------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ------------------------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 2233445556789999999999999996 668888887554
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.5e-33 Score=281.17 Aligned_cols=286 Identities=24% Similarity=0.378 Sum_probs=254.0
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
+.+.+|+++|++++|+|++++|++++.||.|.+|++.+++ ....+.+| ...+..+.|+|++++ |++++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~-~~~i~~~~~~~~~~~------l~~~~~ 71 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGH-TGPVRDVAASADGTY------LASGSS 71 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecC-CcceeEEEECCCCCE------EEEEcC
Confidence 3456999999999999999999999999999999999876 35566666 678899999999977 999999
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
|+.|.+||+.+++....+..|...|.++.|++++
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------------------------- 105 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG---------------------------------------------- 105 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC----------------------------------------------
Confidence 9999999999988899999999999999999986
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.++++++.+|.|++||+.+++.. ..+..|...|.+++|+|++.++++++.|+.|++||+.+++.+..+.
T Consensus 106 ----~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---- 174 (289)
T cd00200 106 ----RILSSSSRDKTIKVWDVETGKCL---TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---- 174 (289)
T ss_pred ----CEEEEecCCCeEEEEECCCcEEE---EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe----
Confidence 37777777999999999855544 5666899999999999999999998889999999999888888877
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.+...+.++.|+|++ .+++++.++.|++||..+++.+..+..|...+.+++|+|++.++++++.||.|++|++..
T Consensus 175 ----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 175 ----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ----cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 577899999999999 788888899999999999999999988999999999999988888888899999999987
Q ss_pred ccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 326 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
+. ....+..|...+.+++++ ++++ .|++++
T Consensus 251 ~~-----------------~~~~~~~~~~~i~~~~~~---------~~~~------------------------~l~~~~ 280 (289)
T cd00200 251 GE-----------------CVQTLSGHTNSVTSLAWS---------PDGK------------------------RLASGS 280 (289)
T ss_pred ce-----------------eEEEccccCCcEEEEEEC---------CCCC------------------------EEEEec
Confidence 66 566677888899999997 6664 999999
Q ss_pred CCCeEEEEe
Q 003467 406 DDTKLFAYC 414 (817)
Q Consensus 406 ~dg~i~~~~ 414 (817)
.|+.+++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
No 53
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=250.47 Aligned_cols=513 Identities=15% Similarity=0.167 Sum_probs=352.4
Q ss_pred EECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC--------eEE
Q 003467 20 ATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG--------SVS 91 (817)
Q Consensus 20 a~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~--------~i~ 91 (817)
-+-|.|..+..- -+.+.++|.+... ++.+.|| ...|.|++.+||--. +++|-..| .|+
T Consensus 72 y~lptgE~vyfv--A~V~Vl~n~ee~~-----Qr~y~GH-~ddikc~~vHPdri~------vatGQ~ag~~g~~~~phvr 137 (626)
T KOG2106|consen 72 YLLPTGELVYFV--AAVGVLYNWEERS-----QRHYLGH-NDDIKCMAVHPDRIR------VATGQGAGTSGRPLQPHVR 137 (626)
T ss_pred EEccCccEEEEe--ccEEEEEeehhhh-----cccccCC-CCceEEEeecCCcee------eccCcccccCCCcCCCeee
Confidence 344555544332 2345667775533 4566676 899999999998754 66554333 499
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+||..+...+..+......|.|++|++.... .
T Consensus 138 iWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G------------------------------------------------~ 169 (626)
T KOG2106|consen 138 IWDSVTLSTLHVIGFFDRGVTCVAFSKINGG------------------------------------------------S 169 (626)
T ss_pred ecccccceeeeeeccccccceeeeecccCCC------------------------------------------------c
Confidence 9999888888888877889999999987632 2
Q ss_pred EEEEE--eCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 172 RVALA--CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 172 ~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+++.. +.+..+.+||.+.+... .........|...+|+|.+..|+..+..|.+..|+.+.+....+...-.
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~---~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe---- 242 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKL---GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE---- 242 (626)
T ss_pred eEEEecCCCccccchhhchhhhcc---CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc----
Confidence 33332 45667889999755444 3333445678899999988877777778899999999887766654311
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
......|.+++|.++|.+++|+++|.|.||+..+.+..+....|.+.|.+++.-.+|. |++|+.|+.|..||-+-.+.
T Consensus 243 k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~- 320 (626)
T KOG2106|consen 243 KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKL- 320 (626)
T ss_pred cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccc-
Confidence 1344889999999999999999999999999998888887779999999999999997 55699999999999332221
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
.-..+....+.|+.++- .+ + -|+.|.....
T Consensus 321 ---------------r~~elPe~~G~iRtv~e-----------~~-----------------------~-di~vGTtrN~ 350 (626)
T KOG2106|consen 321 ---------------RETELPEQFGPIRTVAE-----------GK-----------------------G-DILVGTTRNF 350 (626)
T ss_pred ---------------ccccCchhcCCeeEEec-----------CC-----------------------C-cEEEeeccce
Confidence 11223344555666653 11 1 2455554444
Q ss_pred EEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC--CeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 410 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
|..=.+.+.-. .....+......++..|+...+++.. ..+.+|+ . . +++-...
T Consensus 351 iL~Gt~~~~f~--------~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~---------------k~~wt~~ 405 (626)
T KOG2106|consen 351 ILQGTLENGFT--------LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H---------------KLEWTKI 405 (626)
T ss_pred EEEeeecCCce--------EEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-C---------------ceeEEEE
Confidence 44433332111 11112223344566667666555444 4899998 1 1 1122222
Q ss_pred ecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEE
Q 003467 488 SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV 566 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v 566 (817)
-.....|+.|.|.| .+|++ ..|...+.+.++ ..+..+. ....++++++|+|||.+||+|+.|+.|+|
T Consensus 406 --~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~----~~lv~~~-----~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 406 --IEDPAECADFHPSG-VVAVGTATGRWFVLDTET----QDLVTIH-----TDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred --ecCceeEeeccCcc-eEEEeeccceEEEEeccc----ceeEEEE-----ecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 23678899999999 77776 558888887764 2222222 12558999999999999999999999999
Q ss_pred EEccCCceee-eeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE-------E---------
Q 003467 567 VDVSSSELLH-TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-------W--------- 629 (817)
Q Consensus 567 ~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~-------~--------- 629 (817)
|.+..+.... ...-. +..+|+.+.||+|+++|.+-+.|-.|..|.....+.. |
T Consensus 474 y~Vs~~g~~y~r~~k~----------~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKC----------SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred EEECCCCcEEEEeeee----------cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 9996543332 22221 5689999999999999999999999999944322111 0
Q ss_pred -EEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEE
Q 003467 630 -FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVI 708 (817)
Q Consensus 630 -~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~ 708 (817)
.+-..++..|.+++-+. +.++||++...|.|++|...--+... ....+.+|.+.|+.++|.-+ ...++
T Consensus 544 ~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA--------~~he~~ghs~~vt~V~Fl~~--d~~li 612 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRA--------PSHEYGGHSSHVTNVAFLCK--DSHLI 612 (626)
T ss_pred EEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCCcc--------cceeeccccceeEEEEEeeC--CceEE
Confidence 01123446777788888 88999999999999999875443211 14578899999999999874 34444
Q ss_pred EEc
Q 003467 709 IYS 711 (817)
Q Consensus 709 ~~~ 711 (817)
..+
T Consensus 613 ~tg 615 (626)
T KOG2106|consen 613 STG 615 (626)
T ss_pred ecC
Confidence 443
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=261.02 Aligned_cols=295 Identities=17% Similarity=0.235 Sum_probs=243.5
Q ss_pred EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 101 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 101 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
.+.+..|...||.+.||++| ++||+++.|.
T Consensus 217 ~qil~~htdEVWfl~FS~nG--------------------------------------------------kyLAsaSkD~ 246 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNG--------------------------------------------------KYLASASKDS 246 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCC--------------------------------------------------eeEeeccCCc
Confidence 35677899999999999999 5999999999
Q ss_pred cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeE
Q 003467 181 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 260 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (817)
+..||++.....+...+++.+|..+|..+.||||.++|++|+.|-.+.+||+.+|.....+.. ++...+.+++
T Consensus 247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-------~~~~S~~sc~ 319 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-------GLGFSVSSCA 319 (519)
T ss_pred eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc-------CcCCCcceeE
Confidence 999999987777888899999999999999999999999999999999999999999888873 4568899999
Q ss_pred EecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCcc
Q 003467 261 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 261 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
|.||| .+++|+.|+.+..||+. |..+....+-. ..|.+++.++||+++++.+.|..|++|+......
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---------- 388 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---------- 388 (519)
T ss_pred EccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh----------
Confidence 99999 79999999999999997 55555554422 4577777777777777777777777666543210
Q ss_pred ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 339 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
T Consensus 389 -------------------------------------------------------------------------------- 388 (519)
T KOG0293|consen 389 -------------------------------------------------------------------------------- 388 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 498 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 498 (817)
T Consensus 389 -------------------------------------------------------------------------------- 388 (519)
T KOG0293|consen 389 -------------------------------------------------------------------------------- 388 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeee
Q 003467 499 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 578 (817)
Q Consensus 499 ~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 578 (817)
..+.....+|+++..|.|++++++.-.+..|++||++....++.+
T Consensus 389 -----------------------------------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 389 -----------------------------------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred -----------------------------------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 000011126888888999999998888999999999988899988
Q ss_pred ccCcccccccCCCCCCceeEEEEc-cCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEec
Q 003467 579 TPCREEHDREIQPSEPPITKMFTS-SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS 657 (817)
Q Consensus 579 ~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~ 657 (817)
.+++. ..-|-.-||. .+..++|+|++|+.|+||+..+++....+. .|...|++++|+|.+..++|+|+.
T Consensus 434 ~Ghkq---------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 434 FGHKQ---------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred hcccc---------cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCC
Confidence 88543 2334444554 356899999999999999999999988885 466899999999999999999999
Q ss_pred CCeEEEEEcCC
Q 003467 658 SNQVYVFDVEA 668 (817)
Q Consensus 658 d~~i~vwd~~~ 668 (817)
||+|+||....
T Consensus 504 DgtIRIWg~~~ 514 (519)
T KOG0293|consen 504 DGTIRIWGPSD 514 (519)
T ss_pred CCeEEEecCCc
Confidence 99999998764
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=272.75 Aligned_cols=290 Identities=17% Similarity=0.233 Sum_probs=252.2
Q ss_pred eeeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 6 NSSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
++-+.+|+..|+++.|.| .+.+|++|+.|+.|+|||+..... |++++.|| ..+|.+++|+++|.. ++|+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~---~lrtf~gH-~k~Vrd~~~s~~g~~------fLS~ 276 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR---CLRTFKGH-RKPVRDASFNNCGTS------FLSA 276 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc---eehhhhcc-hhhhhhhhccccCCe------eeee
Confidence 455689999999999999 899999999999999999987432 89999998 899999999999987 9999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
|.|+.|++||+++|+++..+. .+..+.|+.|+|++.
T Consensus 277 sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~------------------------------------------- 312 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ------------------------------------------- 312 (503)
T ss_pred ecceeeeeeccccceEEEEEe-cCCCceeeecCCCCC-------------------------------------------
Confidence 999999999999999999987 567789999999984
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
+.+++|+.|+.|+.||+++++.+ +....|-+.|..+.|-++|+++++.+.|++++||+.+.+-.+..+..
T Consensus 313 ------n~fl~G~sd~ki~~wDiRs~kvv---qeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~- 382 (503)
T KOG0282|consen 313 ------NIFLVGGSDKKIRQWDIRSGKVV---QEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD- 382 (503)
T ss_pred ------cEEEEecCCCcEEEEeccchHHH---HHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-
Confidence 38999999999999999988766 88999999999999999999999999999999999988877665552
Q ss_pred cCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC---eEEEEeecCcc--CeeEEEEecCCCEEEEEccCCcE
Q 003467 245 LGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---TLLQAHSFHKG--DVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~--~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
.......++..+|++ .+++-+.|..|.++.+... .....+.+|.. --..+.|||||.+|++|..||.+
T Consensus 383 ------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 383 ------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred ------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence 344566788889988 7888899999999986532 22355677764 45668999999999999999999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCC
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 398 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (817)
.+||..+.+ ++..+..|...+..+.|. |...
T Consensus 457 ~~wdwkt~k-----------------l~~~lkah~~~ci~v~wH---------P~e~----------------------- 487 (503)
T KOG0282|consen 457 NFWDWKTTK-----------------LVSKLKAHDQPCIGVDWH---------PVEP----------------------- 487 (503)
T ss_pred EEeechhhh-----------------hhhccccCCcceEEEEec---------CCCc-----------------------
Confidence 999999988 678899999999999986 4332
Q ss_pred cEEEEecCCCeEEEEe
Q 003467 399 PMLISAGDDTKLFAYC 414 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~ 414 (817)
..+++++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 5899999999999996
No 56
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-33 Score=284.29 Aligned_cols=249 Identities=20% Similarity=0.310 Sum_probs=225.9
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-------------------------------
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK------------------------------- 99 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------- 99 (817)
|..++... ...++|..|++|+.. ||.|-.|..|++|.+...+
T Consensus 370 c~YT~~nt-~~~v~ca~fSddssm------lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 370 CMYTFHNT-YQGVTCAEFSDDSSM------LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred EEEEEEEc-CCcceeEeecCCcch------hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 34444433 468999999999988 9999999999999987311
Q ss_pred EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC
Q 003467 100 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 179 (817)
Q Consensus 100 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 179 (817)
...++-+|.++|....|+|+. ++|+++++|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~--------------------------------------------------rfLlScSED 472 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR--------------------------------------------------RFLLSCSED 472 (707)
T ss_pred eeEEeecCCCceeeeeecccc--------------------------------------------------cceeeccCC
Confidence 125577899999999999998 599999999
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEe
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 259 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v 259 (817)
+++|+|.+.+...+ ....+|..+|+.+.|+|-|-++||++.|++-++|.......++.+. +|-..|.|+
T Consensus 473 ~svRLWsl~t~s~~---V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa--------ghlsDV~cv 541 (707)
T KOG0263|consen 473 SSVRLWSLDTWSCL---VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA--------GHLSDVDCV 541 (707)
T ss_pred cceeeeecccceeE---EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--------ccccccceE
Confidence 99999999877666 6777999999999999999999999999999999999888888877 899999999
Q ss_pred EEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCcc
Q 003467 260 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 260 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
.|+|+. ++++|+.|.+|++||..+|..++.|.+|.++|.+++|||+|++|++|+.||.|.+||+.++.
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----------- 610 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----------- 610 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-----------
Confidence 999999 89999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 339 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+.+|++.|.++.|+ .+|. .|++||.|.+|++||+..
T Consensus 611 ------~v~~l~~Ht~ti~SlsFS---------~dg~------------------------vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 611 ------LVKQLKGHTGTIYSLSFS---------RDGN------------------------VLASGGADNSVRLWDLTK 650 (707)
T ss_pred ------chhhhhcccCceeEEEEe---------cCCC------------------------EEEecCCCCeEEEEEchh
Confidence 788999999999999998 7775 999999999999999875
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-32 Score=232.87 Aligned_cols=287 Identities=19% Similarity=0.197 Sum_probs=239.4
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
+.+..+++.|..+.|+-||++.++++.|.+|++||...|.++.++. +|...|..++.+.|+ .|++++.|..
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccccccccccCCCCce
Confidence 6788999999999999999999999999999999999999999998 799999999999888 8999999999
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
+.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.... ++..+..-...
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e---------------PiQildea~D~ 147 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE---------------PIQILDEAKDG 147 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC---------------ccchhhhhcCc
Confidence 999999999999999999999999999999999999999999999999886632 45566666777
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCce
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 435 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (817)
|.++.++ + ..++.|+.||+++.||++.+...
T Consensus 148 V~Si~v~----------~-------------------------heIvaGS~DGtvRtydiR~G~l~-------------- 178 (307)
T KOG0316|consen 148 VSSIDVA----------E-------------------------HEIVAGSVDGTVRTYDIRKGTLS-------------- 178 (307)
T ss_pred eeEEEec----------c-------------------------cEEEeeccCCcEEEEEeecceee--------------
Confidence 8777773 1 27888888888888887642200
Q ss_pred eeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceE
Q 003467 436 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 515 (817)
Q Consensus 436 ~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~ 515 (817)
T Consensus 179 -------------------------------------------------------------------------------- 178 (307)
T KOG0316|consen 179 -------------------------------------------------------------------------------- 178 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 003467 516 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 595 (817)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (817)
. .....+|+++.||+|++.+++++-|+++++.|-++|+++...+++.. ..-
T Consensus 179 ------------------s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn---------~ey 229 (307)
T KOG0316|consen 179 ------------------S--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN---------MEY 229 (307)
T ss_pred ------------------h--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc---------cee
Confidence 0 01112799999999999999999999999999999999999999432 222
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 596 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 596 i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
-...+++.....+++|++||.|++||+........++....-.|++++++| .-..++++.. +.+..|--
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp-~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP-TMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc-CccceeEecC-Cceeceee
Confidence 345567778889999999999999999999887777654433489999999 6666666653 44556643
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-31 Score=305.63 Aligned_cols=299 Identities=16% Similarity=0.211 Sum_probs=236.5
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCC----CCCcEEEEEEcCCCCCcEEEEEEeec-CCCCCCCceEEEe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPG----TSGWHCQLTVHGDPKSRISSLVWCHA-GKMGLPGGRLFSS 84 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~g~~~~~V~~l~~s~~-~~~~~~~~~l~s~ 84 (817)
..|.+.|++++|+|+|++||+|+.|+.|+|||.... .........+.+ ...|.+++|++. +.+ |+++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~------las~ 551 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYIKSQ------VASS 551 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCCCCE------EEEE
Confidence 458999999999999999999999999999997542 111112233333 368999999885 444 9999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
+.||+|++||+.+++.+..+.+|...|++++|+| ++
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~------------------------------------------- 588 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP------------------------------------------- 588 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCC-------------------------------------------
Confidence 9999999999999999999999999999999997 44
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc-cCCCEEEEeeCCCcEEEEECCCCc-eEEEE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS-ADGNMLYSGSSDGYIRSWDAKLGY-EIYRI 241 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s~~~dg~i~vwd~~~g~-~~~~~ 241 (817)
.+|++|+.||.|++||+.++..+ ..+..+ ..|.++.|+ ++|.+|++|+.||.|++||+++++ .+..+
T Consensus 589 -------~~L~Sgs~Dg~v~iWd~~~~~~~---~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 589 -------TLLASGSDDGSVKLWSINQGVSI---GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred -------CEEEEEcCCCEEEEEECCCCcEE---EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 48999999999999999876655 344433 579999995 579999999999999999998765 34444
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC------CeEEEEeecCccCeeEEEEecCCCEEEEEccC
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
. +|...|.++.|.+...|++++.|++|++||+.. ...+..+.+|...+.+++|++++.+|++|+.|
T Consensus 658 ~--------~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D 729 (793)
T PLN00181 658 I--------GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET 729 (793)
T ss_pred c--------CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 4 688999999998666899999999999999974 35678899999999999999999999999999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
+.|++|+........... ......+ .-.....|...|.+++|+ |++.
T Consensus 730 ~~v~iw~~~~~~~~~s~~---~~~~~~~-~~~~~~~~~~~V~~v~ws---------~~~~-------------------- 776 (793)
T PLN00181 730 NEVFVYHKAFPMPVLSYK---FKTIDPV-SGLEVDDASQFISSVCWR---------GQSS-------------------- 776 (793)
T ss_pred CEEEEEECCCCCceEEEe---cccCCcc-cccccCCCCcEEEEEEEc---------CCCC--------------------
Confidence 999999976543100000 0000000 001123455678999997 6665
Q ss_pred CCCcEEEEecCCCeEEEEeC
Q 003467 396 LGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~~ 415 (817)
.|++|+.||.|++|++
T Consensus 777 ----~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 ----TLVAANSTGNIKILEM 792 (793)
T ss_pred ----eEEEecCCCcEEEEec
Confidence 9999999999999986
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-33 Score=243.34 Aligned_cols=286 Identities=19% Similarity=0.277 Sum_probs=258.6
Q ss_pred ccCCCceEEEEECC---CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 10 DWKPSPVVALATSA---DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 10 ~~h~~~I~~la~sp---dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
.+|..+|..++||| +|-+|++++.||.-.+-+-.+|. -+-++.|| ++.|.+..+..+... .|+++.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd----wigtfegh-kgavw~~~l~~na~~------aasaaa 79 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD----WIGTFEGH-KGAVWSATLNKNATR------AASAAA 79 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC----cEEeeecc-CcceeeeecCchhhh------hhhhcc
Confidence 68999999999995 89999999999999999888887 37899998 899999998888755 899999
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
|-+-++||.-+|..+..+. |..-|.+++|+.|.
T Consensus 80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds---------------------------------------------- 112 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS---------------------------------------------- 112 (334)
T ss_pred cchhhhhhhhhhhhhhhhh-hhheeeeEEecccc----------------------------------------------
Confidence 9999999999999999987 88999999999998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
++|++|+.+..+||||++..+... ..+.+|.+.|..+.|....+.+++.+.|++||+||.++|..++++.
T Consensus 113 ----~~lltgg~ekllrvfdln~p~App--~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~---- 182 (334)
T KOG0278|consen 113 ----NYLLTGGQEKLLRVFDLNRPKAPP--KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE---- 182 (334)
T ss_pred ----hhhhccchHHHhhhhhccCCCCCc--hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----
Confidence 489999999999999998544332 7889999999999999999999999999999999999999999997
Q ss_pred CCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 247 GLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
....|.++.++++|.+++....+.|.+||..+..+++.++. ...|.+..++|+...+++|+.|..++.||..++
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCC
Confidence 67789999999999999999999999999999999988875 567999999999999999999999999999998
Q ss_pred cCCCCCCCCCccccceEEEeec-cccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 327 SIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
. .+.. ..+|-++|.|+.|+ |+|. ..++|+
T Consensus 257 e-----------------Ei~~~nkgh~gpVhcVrFS---------PdGE------------------------~yAsGS 286 (334)
T KOG0278|consen 257 E-----------------EIGSYNKGHFGPVHCVRFS---------PDGE------------------------LYASGS 286 (334)
T ss_pred c-----------------eeeecccCCCCceEEEEEC---------CCCc------------------------eeeccC
Confidence 7 4445 48999999999998 8886 999999
Q ss_pred CCCeEEEEeCCccc
Q 003467 406 DDTKLFAYCANEFT 419 (817)
Q Consensus 406 ~dg~i~~~~~~~~~ 419 (817)
.||+|++|.....+
T Consensus 287 EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGK 300 (334)
T ss_pred CCceEEEEEecCCC
Confidence 99999999987654
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3e-33 Score=267.42 Aligned_cols=289 Identities=18% Similarity=0.267 Sum_probs=247.3
Q ss_pred eeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC
Q 003467 196 HRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 272 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~ 272 (817)
...+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++. +|..+|.+++|+++| .+++++.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeeeeec
Confidence 378899999999999999 899999999999999999987 88999888 899999999999999 7999999
Q ss_pred CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 351 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (817)
|+.|++||+++|+++..+.. ...+.|+.|.||+ +.+++|+.|+.|+.||+++++ .+..+..
T Consensus 279 D~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----------------vvqeYd~ 340 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----------------VVQEYDR 340 (503)
T ss_pred ceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----------------HHHHHHh
Confidence 99999999999999999975 5678999999999 788899999999999999998 6788899
Q ss_pred CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCC
Q 003467 352 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 431 (817)
Q Consensus 352 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 431 (817)
|-+.|..+.|- ++++ .+++.+.|+.+++|+......++.
T Consensus 341 hLg~i~~i~F~---------~~g~------------------------rFissSDdks~riWe~~~~v~ik~-------- 379 (503)
T KOG0282|consen 341 HLGAILDITFV---------DEGR------------------------RFISSSDDKSVRIWENRIPVPIKN-------- 379 (503)
T ss_pred hhhheeeeEEc---------cCCc------------------------eEeeeccCccEEEEEcCCCccchh--------
Confidence 99999999997 7776 999999999999999876332211
Q ss_pred CCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-Ec
Q 003467 432 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD 510 (817)
Q Consensus 432 ~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~ 510 (817)
+.........|++.+|++.+++. +-
T Consensus 380 ------------------------------------------------------i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 380 ------------------------------------------------------IADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred ------------------------------------------------------hcchhhccCcceecCCCCCeehhhcc
Confidence 11111244668889999999988 67
Q ss_pred CCceEEEEeecCCCCCceEEEeeecCCccc--cceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccccc
Q 003467 511 HVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE 588 (817)
Q Consensus 511 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 588 (817)
++.+.+|.+...-... .+..+.+|. +....+.|||||++|++|+.||.+.+||..+-+++..++.
T Consensus 406 dN~i~ifs~~~~~r~n-----kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-------- 472 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLN-----KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-------- 472 (503)
T ss_pred CceEEEEecccccccC-----HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--------
Confidence 8999999865421111 124455554 3567889999999999999999999999999999999998
Q ss_pred CCCCCCceeEEEEccCC-CEEEEEeCCCcEEEEE
Q 003467 589 IQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFN 621 (817)
Q Consensus 589 ~~~~~~~i~~l~~s~dg-~~la~~~~dg~i~vwd 621 (817)
|...+..+.|+|.. ..+|+++.||.|++|+
T Consensus 473 ---h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 473 ---HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999999965 4899999999999996
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=281.69 Aligned_cols=259 Identities=25% Similarity=0.390 Sum_probs=226.6
Q ss_pred CCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccc
Q 003467 47 SGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLM 124 (817)
Q Consensus 47 ~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~ 124 (817)
..+.....+.+++...|.++.|+++|++ |++++.|+.+++|++.+++ ..+.+.+|...|..++|+|++
T Consensus 146 ~~~~~~~~~~~~~~~sv~~~~fs~~g~~------l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~---- 215 (456)
T KOG0266|consen 146 RVFSLEQTLAGHECPSVTCVDFSPDGRA------LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG---- 215 (456)
T ss_pred ccceeeeeecccccCceEEEEEcCCCCe------EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC----
Confidence 3455567777887899999999999998 9999999999999998888 778888999999999999999
Q ss_pred eeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCC-CceeEeeccCCcc
Q 003467 125 HAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDS-DELIYHRSLPRVS 203 (817)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~ 203 (817)
.++++++.|++|+|||+... ..+ +++.+|.
T Consensus 216 ----------------------------------------------~~l~s~s~D~tiriwd~~~~~~~~---~~l~gH~ 246 (456)
T KOG0266|consen 216 ----------------------------------------------SYLLSGSDDKTLRIWDLKDDGRNL---KTLKGHS 246 (456)
T ss_pred ----------------------------------------------cEEEEecCCceEEEeeccCCCeEE---EEecCCC
Confidence 59999999999999999433 344 8899999
Q ss_pred ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC
Q 003467 204 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR 282 (817)
Q Consensus 204 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~ 282 (817)
..|++++|+|+|+++++|+.|++|++||+++++++..+. +|...|.+++|++++ .|++++.|+.|++||+.
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 999999999999999999999999999999999999998 799999999999999 78899999999999999
Q ss_pred CCe--EEEEeecCccC--eeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 283 HGT--LLQAHSFHKGD--VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 283 ~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
++. ++..+..+... +.++.|+|++.++++++.|+.+++|++.... ......+|...+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-----------------~~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-----------------SVGTYTGHSNLVRC 381 (456)
T ss_pred CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-----------------ceeeecccCCccee
Confidence 999 56777777666 9999999999999999999999999999887 67788888777534
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+.-. .. .+.+ ..+++|+.|+.|.+|+..+..
T Consensus 382 ~~~~-~~-----~~~~------------------------~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 382 IFSP-TL-----STGG------------------------KLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred Eecc-cc-----cCCC------------------------CeEEEEeCCceEEEEeCCccc
Confidence 3211 00 1344 499999999999999998743
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-30 Score=263.53 Aligned_cols=286 Identities=23% Similarity=0.338 Sum_probs=241.0
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
+.+.+|.++|.+++|+|++++|++++.||.|++|++.+++....+. .|...+..+.|++++ .+++++.+|.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECCCCCEEEEEcCCCe
Confidence 5677999999999999999999999999999999999888777766 577888999999999 8999999999
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
|++||..+++.+..+..|...+.++.|+++++++++++.|+.|.+|++.+.+ ....+..|...
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~ 137 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----------------CLTTLRGHTDW 137 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----------------EEEEeccCCCc
Confidence 9999999888889999999999999999998888888889999999998655 44555567777
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCce
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 435 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (817)
+.++++. |+++ ++++++.|+.+++||+....
T Consensus 138 i~~~~~~---------~~~~------------------------~l~~~~~~~~i~i~d~~~~~---------------- 168 (289)
T cd00200 138 VNSVAFS---------PDGT------------------------FVASSSQDGTIKLWDLRTGK---------------- 168 (289)
T ss_pred EEEEEEc---------CcCC------------------------EEEEEcCCCcEEEEEccccc----------------
Confidence 7777776 4443 66666667777777764211
Q ss_pred eeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceE
Q 003467 436 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS 515 (817)
Q Consensus 436 ~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~ 515 (817)
T Consensus 169 -------------------------------------------------------------------------------- 168 (289)
T cd00200 169 -------------------------------------------------------------------------------- 168 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 003467 516 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 595 (817)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (817)
.+ ..+..+...+.++.|+|+++.+++++.++.|++||+.+++.+..+.. |...
T Consensus 169 -----------~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~~~ 221 (289)
T cd00200 169 -----------CV-----ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----------HENG 221 (289)
T ss_pred -----------cc-----eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----------cCCc
Confidence 00 00112333688999999999999999999999999998888888866 7889
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEE
Q 003467 596 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 596 i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
+.+++|+|++.++++++.+|.|++||+.+++....+. .|...|.+++|+| ++.+|++++.|+.|++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9999999999999999889999999999888776665 4557899999999 899999999999999996
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-32 Score=251.85 Aligned_cols=282 Identities=17% Similarity=0.212 Sum_probs=236.6
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
...|.|+.+..+ . +++|..|++|++||.++..+++.+.+|.+.|.|+.|..
T Consensus 197 skgVYClQYDD~--k------iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--------------------- 247 (499)
T KOG0281|consen 197 SKGVYCLQYDDE--K------IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--------------------- 247 (499)
T ss_pred CCceEEEEecch--h------hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---------------------
Confidence 467888887533 3 99999999999999999999999999999999999975
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 219 (817)
+.+++|+.|.+|+|||.++++.+ .++-+|...|..+.|+ ..+++
T Consensus 248 -------------------------------rviisGSSDsTvrvWDv~tge~l---~tlihHceaVLhlrf~--ng~mv 291 (499)
T KOG0281|consen 248 -------------------------------RVIVSGSSDSTVRVWDVNTGEPL---NTLIHHCEAVLHLRFS--NGYMV 291 (499)
T ss_pred -------------------------------eEEEecCCCceEEEEeccCCchh---hHHhhhcceeEEEEEe--CCEEE
Confidence 48999999999999999999888 8999999999999998 45999
Q ss_pred EeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeE
Q 003467 220 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA 299 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 299 (817)
+++.|.+|.+||+.....+.-.. ...+|...|+.+.|+.. ++++++.|.+|++|+..++..+.++.+|...|.|
T Consensus 292 tcSkDrsiaVWdm~sps~it~rr-----VLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 292 TCSKDRSIAVWDMASPTDITLRR-----VLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 365 (499)
T ss_pred EecCCceeEEEeccCchHHHHHH-----HHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhhhccccccee
Confidence 99999999999997654321111 11279999999999744 9999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccc
Q 003467 300 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 379 (817)
Q Consensus 300 l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 379 (817)
+.+. ++++++|+.|.+|++||+..+. ++..+.+|..-|+++.|. +
T Consensus 366 lQYr--~rlvVSGSSDntIRlwdi~~G~-----------------cLRvLeGHEeLvRciRFd----------~------ 410 (499)
T KOG0281|consen 366 LQYR--DRLVVSGSSDNTIRLWDIECGA-----------------CLRVLEGHEELVRCIRFD----------N------ 410 (499)
T ss_pred hhcc--CeEEEecCCCceEEEEeccccH-----------------HHHHHhchHHhhhheeec----------C------
Confidence 9884 8899999999999999999998 889999999999999982 2
Q ss_pred cCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccC--CcccCCCCCCCceeeecceeecCCeEEEEEeCCeE
Q 003467 380 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS--PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 457 (817)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i 457 (817)
..+++|+.||+|++||+....... ....+......+.+.+..+.|..-..+-.+.+.+|
T Consensus 411 -------------------krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtI 471 (499)
T KOG0281|consen 411 -------------------KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTI 471 (499)
T ss_pred -------------------ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeE
Confidence 389999999999999998754332 22233444455666777777766555555666799
Q ss_pred EEEEecccC
Q 003467 458 DILSVRLEN 466 (817)
Q Consensus 458 ~i~~~~~~~ 466 (817)
-||++..+.
T Consensus 472 LiWdFl~~~ 480 (499)
T KOG0281|consen 472 LIWDFLNGP 480 (499)
T ss_pred EEEEcCCCC
Confidence 999987654
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-32 Score=235.24 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=248.4
Q ss_pred eccCCccceEEEEEEcc---CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC
Q 003467 197 RSLPRVSGRVLSVTWSA---DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 272 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~---dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~ 272 (817)
.+..+|+.+|..++|+| +|-+|++++.||.=.+-+-++|.-+.++. +|.+.||+.....+. +.++++.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe--------ghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE--------GHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee--------ccCcceeeeecCchhhhhhhhcc
Confidence 45679999999999975 88899999999999888989999999998 899999999998887 6788999
Q ss_pred CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 352 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (817)
|-+-++||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+++|+++.... ....+.+|
T Consensus 80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------pp~E~~gh 142 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------PPKEISGH 142 (334)
T ss_pred cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC----------------CchhhcCC
Confidence 9999999999999999885 788999999999999999999999999999988764 45678999
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
+..|+.+.|+ ...+ .++|...|++|++||.++....
T Consensus 143 tg~Ir~v~wc---------~eD~------------------------~iLSSadd~tVRLWD~rTgt~v----------- 178 (334)
T KOG0278|consen 143 TGGIRTVLWC---------HEDK------------------------CILSSADDKTVRLWDHRTGTEV----------- 178 (334)
T ss_pred CCcceeEEEe---------ccCc------------------------eEEeeccCCceEEEEeccCcEE-----------
Confidence 9999999997 4443 8888899999999999875522
Q ss_pred CceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 512 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 512 (817)
..+..+ .++.++.++++|++|.++..+
T Consensus 179 ---------------------------------------------------~sL~~~--s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 179 ---------------------------------------------------QSLEFN--SPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred ---------------------------------------------------EEEecC--CCCcceeeccCCCEEEEecCc
Confidence 222222 678899999999999999999
Q ss_pred ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeee-ccCcccccccCCC
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF-TPCREEHDREIQP 591 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~ 591 (817)
.|+.|+.... .. ++..++|. .|.+..++|+...+++|++|..++.||..+|+.+..+ ++
T Consensus 206 sV~Fwdaksf---~~---lKs~k~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg----------- 265 (334)
T KOG0278|consen 206 SVKFWDAKSF---GL---LKSYKMPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG----------- 265 (334)
T ss_pred eeEEeccccc---cc---eeeccCcc---ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-----------
Confidence 9999998651 11 22344443 6888899999999999999999999999999988886 66
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcc
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 626 (817)
|.++|.|+.|||||...|+|+.||+|++|....++
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99999999999999999999999999999876554
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.7e-31 Score=242.77 Aligned_cols=286 Identities=21% Similarity=0.296 Sum_probs=239.6
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
-|+++|.++... +++|.+|+.||.++|||.... +.+++.|| .++|.+++|.-.+.. ..+++++|.|.++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-----~~~~~~Gh-t~~ik~v~~v~~n~~---~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-----SIKTIVGH-TGPIKSVAWVIKNSS---SCLFVSASMDQTL 171 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-----eEEEEecC-CcceeeeEEEecCCc---cceEEEecCCceE
Confidence 477888888888 889999999999999997654 58888888 899998888643321 1469999999999
Q ss_pred EEEECCCCeEE----EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 91 SEWDLYDLKQK----IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 91 ~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
++|-++.++.. ....+|...|.+++..+++
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg---------------------------------------------- 205 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG---------------------------------------------- 205 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCC----------------------------------------------
Confidence 99999887644 3445999999999999999
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCC----------------------ceeEeeccCCccceEEEEEEccCCCEEEEeeCC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSD----------------------ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 224 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~----------------------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d 224 (817)
..+++|+.|..|.||+..+.. .-.....+.+|...|.++.|++ ...+++++.|
T Consensus 206 ----tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD 280 (423)
T KOG0313|consen 206 ----TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD 280 (423)
T ss_pred ----CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc
Confidence 499999999999999932110 0012356789999999999997 6889999999
Q ss_pred CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCe---EEEEeecCccCeeEE
Q 003467 225 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT---LLQAHSFHKGDVNAL 300 (817)
Q Consensus 225 g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l 300 (817)
.+|+.||+.+|..+.++. ....+.++.++|.. .|++|+.|..|++||.+++. ..+++.+|.+.|.++
T Consensus 281 HTIk~WDletg~~~~~~~---------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLT---------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred ceEEEEEeecccceeeee---------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence 999999999999999887 66788999999987 79999999999999998743 357889999999999
Q ss_pred EEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccc
Q 003467 301 AAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 379 (817)
Q Consensus 301 ~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 379 (817)
.|+|... .|++++.|+++++||+++... .+..+.+|...|.++.|. ++.
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~----------------plydI~~h~DKvl~vdW~----------~~~---- 401 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA----------------PLYDIAGHNDKVLSVDWN----------EGG---- 401 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCC----------------cceeeccCCceEEEEecc----------CCc----
Confidence 9999765 566788999999999988653 577889999999999994 443
Q ss_pred cCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 380 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+++||.|.+|+++....
T Consensus 402 --------------------~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 402 --------------------LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred --------------------eEEeccCcceEEEecccc
Confidence 999999999999986543
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.1e-29 Score=290.76 Aligned_cols=305 Identities=14% Similarity=0.198 Sum_probs=235.7
Q ss_pred CCcEEEEEecCCCceeE--eeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC----ce----EEEEEeecCCC
Q 003467 179 DGCVRIYRITDSDELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG----YE----IYRITVGLGGL 248 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g----~~----~~~~~~~~~~~ 248 (817)
+|.+++|+......... ...+..|.+.|.+++|+|+|++|++|+.|+.|+|||.... .. ...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~------- 529 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL------- 529 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-------
Confidence 67788888763322211 1234568999999999999999999999999999997542 11 1111
Q ss_pred CCCCceeEEEeEEecC-C-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeec
Q 003467 249 GSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.+...+.+++|++. + .|++++.||+|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|+.|++||+.+
T Consensus 530 --~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 530 --ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred --cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 23457889999874 3 799999999999999999999999999999999999997 788999999999999999987
Q ss_pred ccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 326 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
+. .+..+..+ ..+.++.|.. +++ .+|++|+
T Consensus 608 ~~-----------------~~~~~~~~-~~v~~v~~~~--------~~g------------------------~~latgs 637 (793)
T PLN00181 608 GV-----------------SIGTIKTK-ANICCVQFPS--------ESG------------------------RSLAFGS 637 (793)
T ss_pred Cc-----------------EEEEEecC-CCeEEEEEeC--------CCC------------------------CEEEEEe
Confidence 65 44444443 4577777741 233 3888888
Q ss_pred CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeee
Q 003467 406 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 485 (817)
Q Consensus 406 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~ 485 (817)
.|+.|++||+.....
T Consensus 638 ~dg~I~iwD~~~~~~----------------------------------------------------------------- 652 (793)
T PLN00181 638 ADHKVYYYDLRNPKL----------------------------------------------------------------- 652 (793)
T ss_pred CCCeEEEEECCCCCc-----------------------------------------------------------------
Confidence 888888888753110
Q ss_pred eeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEE
Q 003467 486 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 565 (817)
Q Consensus 486 ~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~ 565 (817)
.+ ..+.+|...|.++.|. ++.+|++++.|++|+
T Consensus 653 -----------------------------------------~~-----~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 653 -----------------------------------------PL-----CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred -----------------------------------------cc-----eEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 00 1122444568888886 788999999999999
Q ss_pred EEEccC------CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEe-------
Q 003467 566 VVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS------- 632 (817)
Q Consensus 566 v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~------- 632 (817)
+||+.. +..++++.+ |...+.+++|+|++++||+|+.|+.|++|+.......+...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~g-----------h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMG-----------HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEeCCCCccccCCcceEEEcC-----------CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 999864 356777777 88999999999999999999999999999987654332211
Q ss_pred -----cCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 633 -----RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 633 -----~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
..+...|.+++|+| ++..|++++.||.|++|++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 11234699999999 9999999999999999986
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=3.5e-30 Score=227.35 Aligned_cols=301 Identities=16% Similarity=0.208 Sum_probs=242.7
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
-+.+|..+|+.+.|+.+|.+|.+++.|.++-||-..+|+ ..-++.|| .++|.|+...-+.+. |++++.|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe----rlGty~GH-tGavW~~Did~~s~~------liTGSAD 73 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE----RLGTYDGH-TGAVWCCDIDWDSKH------LITGSAD 73 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc----eeeeecCC-CceEEEEEecCCcce------eeecccc
Confidence 468999999999999999999999999999999988887 58899998 899999999999987 9999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
.++++||+++|+++..++ .+.+|+.+.|++++.
T Consensus 74 ~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn---------------------------------------------- 106 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGN---------------------------------------------- 106 (327)
T ss_pred ceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCc----------------------------------------------
Confidence 999999999999999998 678999999999994
Q ss_pred ccCCEEEEEe-----CCCcEEEEEecCCC----ceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 168 VEDRRVALAC-----DDGCVRIYRITDSD----ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 168 ~~~~~l~~~~-----~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
+++... ..+.|.++|++... .-.....+..+...++.+-|.|-+++|++|.+||.|.+||+++|+..
T Consensus 107 ----~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 107 ----LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred ----EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 333332 34689999997322 11112556667789999999999999999999999999999999766
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
..-.. .|...|+.+++++|. .+++++.|.+-++||..+.+.++++.. ..+|++.+++|....++.||.-..
T Consensus 183 v~s~~-------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 183 VDSDE-------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eechh-------hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCcee
Confidence 55432 688899999999999 799999999999999999999999875 789999999998888887655322
Q ss_pred EEEEEe--ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 318 VILYKA--SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 318 i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
.-+-.. +.++... ......- -+.+...++|-++|++++++ |+|+
T Consensus 255 ~dVTTT~~r~GKFEA--rFyh~i~---eEEigrvkGHFGPINsvAfh---------PdGk-------------------- 300 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEA--RFYHLIF---EEEIGRVKGHFGPINSVAFH---------PDGK-------------------- 300 (327)
T ss_pred eeeeeecccccchhh--hHHHHHH---HHHhccccccccCcceeEEC---------CCCc--------------------
Confidence 222211 1111000 0000000 00456778999999999999 9998
Q ss_pred CCCcEEEEecCCCeEEEEeCC
Q 003467 396 LGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~~~ 416 (817)
...|||+||.|++.-..
T Consensus 301 ----sYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 301 ----SYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ----ccccCCCCceEEEEEec
Confidence 89999999999997654
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=233.47 Aligned_cols=301 Identities=19% Similarity=0.261 Sum_probs=248.2
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCC------------CC--CCcEEEEEEcCCCCCcEEEEEEe
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSP------------GT--SGWHCQLTVHGDPKSRISSLVWC 69 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~------------~~--~~~~~~~~~~g~~~~~V~~l~~s 69 (817)
|...++.-|.++++|-+|||||.++|+|+.|..|+|.|+.. +. .....++++..| ...|++|.|.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH-~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH-VDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc-cCcccceeec
Confidence 45678899999999999999999999999999999999871 11 112356778777 7899999999
Q ss_pred ecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe--ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 70 HAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 70 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
|.... |++++.|++|+++|.......+.++ ....+|.++.|+|.|
T Consensus 182 Pre~I------LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--------------------------- 228 (430)
T KOG0640|consen 182 PRETI------LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--------------------------- 228 (430)
T ss_pred chhhe------EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---------------------------
Confidence 99987 9999999999999997654443332 346789999999999
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcE
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYI 227 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 227 (817)
.+|++|.+...+++||+++-+.+.....-.+|++.|+++.+++.|++-++|+.||.|
T Consensus 229 -----------------------efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~I 285 (430)
T KOG0640|consen 229 -----------------------EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAI 285 (430)
T ss_pred -----------------------ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcE
Confidence 489999999999999999877765545556899999999999999999999999999
Q ss_pred EEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-----cCeeEEE
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-----GDVNALA 301 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~ 301 (817)
++||--+++++.++... .....|.+..|..+| ++++.+.|..+++|.+.+++++..+.+.. .--+...
T Consensus 286 klwDGVS~rCv~t~~~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 286 KLWDGVSNRCVRTIGNA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred EeeccccHHHHHHHHhh------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence 99999999999988742 234679999999999 79999999999999999999999987642 1234456
Q ss_pred EecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccccc
Q 003467 302 AAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 380 (817)
Q Consensus 302 ~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 380 (817)
|+....+++.-.. .+.+.-||.++... ....-.+|.+.++.+.-+ |.+
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr----------------~~l~slgHn~a~R~i~HS---------P~~------ 408 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADR----------------VALLSLGHNGAVRWIVHS---------PVE------ 408 (430)
T ss_pred hcCccceEEccccccCceeeccccchhh----------------hhhcccCCCCCceEEEeC---------CCC------
Confidence 7777777776544 67899999988762 122336899999999987 655
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 381 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
+.+++++.|...++|--.
T Consensus 409 ------------------p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 ------------------PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ------------------Cceeeecccceeeeeeec
Confidence 389999999999999643
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-28 Score=221.67 Aligned_cols=296 Identities=17% Similarity=0.270 Sum_probs=232.3
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC--C
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--T 273 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~--d 273 (817)
+.+..-.+.|.++.|+++|.+|++++.|-+|++||..+|+++..+. .+...+..+.|.... .++.++. |
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------SKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--------cccccccEEEEecCCceEEEccCCCC
Confidence 5555667899999999999999999999999999999999999998 577778888887655 5665555 8
Q ss_pred CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCC
Q 003467 274 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT 353 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (817)
.+|+..++.+.+.++-+.+|...|..|+.+|-+..+++++.|++|++||++..+. ...+..
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----------------qg~l~~-- 140 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----------------QGLLNL-- 140 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----------------ceEEec--
Confidence 8999999999999999999999999999999999999999999999999986541 111100
Q ss_pred CccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCC
Q 003467 354 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 433 (817)
Q Consensus 354 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 433 (817)
T Consensus 141 -------------------------------------------------------------------------------- 140 (311)
T KOG1446|consen 141 -------------------------------------------------------------------------------- 140 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC-C
Q 003467 434 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH-V 512 (817)
Q Consensus 434 ~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~-~ 512 (817)
..-..+|++|.|-++|++.. +
T Consensus 141 ----------------------------------------------------------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 141 ----------------------------------------------------------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred ----------------------------------------------------------CCCcceeECCCCcEEEEecCCC
Confidence 01123456666766666544 3
Q ss_pred ceEEEEeecCCCCCceEEEeeecCC-ccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
.|++|++..-+.+... ...+. ......+.|.|||||++|+.++..+.+++.|.-+|..+.+|.....
T Consensus 163 ~IkLyD~Rs~dkgPF~----tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-------- 230 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFT----TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-------- 230 (311)
T ss_pred eEEEEEecccCCCCce----eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC--------
Confidence 7777777653333221 11122 3344789999999999999999999999999999999999987433
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
...-....+|+|||+++.+++.||+|.+|+++++.....+...+..++.++.|+| .- ..-++.+..+.+|-.+..++
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~--~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RY--AMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ce--eeeeecCceEEEEecccccc
Confidence 2222367789999999999999999999999999988887776778999999998 54 44445567788998876665
Q ss_pred c
Q 003467 672 G 672 (817)
Q Consensus 672 ~ 672 (817)
.
T Consensus 308 ~ 308 (311)
T KOG1446|consen 308 P 308 (311)
T ss_pred C
Confidence 3
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.5e-29 Score=219.82 Aligned_cols=286 Identities=15% Similarity=0.176 Sum_probs=233.2
Q ss_pred EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcE
Q 003467 103 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 182 (817)
Q Consensus 103 ~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 182 (817)
.+.+|..+++.+.|+.+| .+|.+++.|...
T Consensus 5 ~l~GHERplTqiKyN~eG--------------------------------------------------DLlFscaKD~~~ 34 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG--------------------------------------------------DLLFSCAKDSTP 34 (327)
T ss_pred ccccCccccceEEecCCC--------------------------------------------------cEEEEecCCCCc
Confidence 467899999999999999 499999999999
Q ss_pred EEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 183 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 183 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
.+|-..+++.+ -++.+|++.|+|++.+.+.++|++|+.|.++++||+++|+++..+. ....|..+.|+
T Consensus 35 ~vw~s~nGerl---Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 35 TVWYSLNGERL---GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------TNSPVKRVDFS 102 (327)
T ss_pred eEEEecCCcee---eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------cCCeeEEEeec
Confidence 99988788888 8999999999999999999999999999999999999999999997 67899999999
Q ss_pred cCCeEEEEcC------CCcEEEEeCC-------CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 263 RCGTLVSADS------TGSVQFWDSR-------HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 263 ~~~~l~s~~~------dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
.+|.++..+. .+.|.++|++ ..+++..+..+...++.+-|+|-+++|++|..||.|.+||+.++..
T Consensus 103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~- 181 (327)
T KOG0643|consen 103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE- 181 (327)
T ss_pred cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-
Confidence 9996544443 3568999998 4556778888899999999999999999999999999999999763
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
.+...+.|++.|+.|.++ +|.. ++++++.|.+
T Consensus 182 ---------------~v~s~~~h~~~Ind~q~s---------~d~T------------------------~FiT~s~Dtt 213 (327)
T KOG0643|consen 182 ---------------LVDSDEEHSSKINDLQFS---------RDRT------------------------YFITGSKDTT 213 (327)
T ss_pred ---------------eeechhhhcccccccccc---------CCcc------------------------eEEecccCcc
Confidence 677789999999999998 7775 9999999999
Q ss_pred EEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeec
Q 003467 410 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 489 (817)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 489 (817)
-++||..+...++...
T Consensus 214 akl~D~~tl~v~Kty~---------------------------------------------------------------- 229 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYT---------------------------------------------------------------- 229 (327)
T ss_pred ceeeeccceeeEEEee----------------------------------------------------------------
Confidence 9999998754222110
Q ss_pred CCCCeEEEEecCCCcEEEEEcCCce---------------EEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCE
Q 003467 490 ASRKIICSTISNSGMLFAYSDHVKP---------------SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ 554 (817)
Q Consensus 490 ~~~~i~~~~~s~~g~~la~~~~~~i---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~ 554 (817)
...++.+++++|-...++.+..... +.|++-. ..++ ..+.+|.++|++++|+|||+.
T Consensus 230 te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~---eEEi-----grvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 230 TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF---EEEI-----GRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH---HHHh-----ccccccccCcceeEECCCCcc
Confidence 1145666666665555554322111 1122111 1111 457899999999999999999
Q ss_pred EEEEecCCcEEEEEccC
Q 003467 555 LIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 555 l~~~~~dg~i~v~d~~~ 571 (817)
.++|++||.|++.-++.
T Consensus 302 YsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccCCCCceEEEEEecc
Confidence 99999999999987654
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=263.84 Aligned_cols=280 Identities=23% Similarity=0.327 Sum_probs=248.9
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEE-EcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLT-VHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
.+...+++..|. +.+++++..+++|++||..++. ...+ +.|| .+.|.+++|..-+.+ |++|+.|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----~i~~~l~GH-~g~V~~l~~~~~~~~------lvsgS~D~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----LILTRLVGH-FGGVWGLAFPSGGDK------LVSGSTDKT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccce----EEEeeccCC-CCCceeEEEecCCCE------EEEEecCCc
Confidence 367889999998 6678999999999999999887 3455 8888 899999999986666 999999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
+++||..+|.|...+.+|...|.++...+.
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-------------------------------------------------- 302 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSVRCLTIDPF-------------------------------------------------- 302 (537)
T ss_pred EEeEecCCCcEEEEecCCCceEEEEEccCc--------------------------------------------------
Confidence 999999999999999999999999988763
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
.+++|+.|.+|++|+++++..+ ..+.+|.+.|.++..+ +.++++|+.|++|++||+.+++++..+.
T Consensus 303 --~~~sgs~D~tVkVW~v~n~~~l---~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~------- 368 (537)
T KOG0274|consen 303 --LLVSGSRDNTVKVWDVTNGACL---NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS------- 368 (537)
T ss_pred --eEeeccCCceEEEEeccCcceE---EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-------
Confidence 7888999999999999988777 7777899999999998 7899999999999999999999999998
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCC-eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
+|...|.++.+.+...+++|+.|++|++||+++. +++.++.+|.+-+..+.+ .+++|++++.|++|++||..+++
T Consensus 369 -gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~- 444 (537)
T KOG0274|consen 369 -GHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE- 444 (537)
T ss_pred -CCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc-
Confidence 8999999998877678999999999999999999 999999999999977766 47889999999999999999988
Q ss_pred CCCCCCCCccccceEEEeecccc-CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
++..+.. |...|.++++. .+.+++++.|
T Consensus 445 ----------------~~~~~~~~~~~~v~~l~~~-----------------------------------~~~il~s~~~ 473 (537)
T KOG0274|consen 445 ----------------CLRTLEGRHVGGVSALALG-----------------------------------KEEILCSSDD 473 (537)
T ss_pred ----------------eeeeeccCCcccEEEeecC-----------------------------------cceEEEEecC
Confidence 6777777 67778887761 1389999999
Q ss_pred CeEEEEeCCcccccC
Q 003467 408 TKLFAYCANEFTKFS 422 (817)
Q Consensus 408 g~i~~~~~~~~~~~~ 422 (817)
+.+.+||+.++....
T Consensus 474 ~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLIR 488 (537)
T ss_pred CeeEEEecccCchhh
Confidence 999999999876443
No 72
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=1.4e-28 Score=242.16 Aligned_cols=213 Identities=17% Similarity=0.209 Sum_probs=160.9
Q ss_pred eeeeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCC-CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 5 RNSSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTS-GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
+.-.+.+|...|+.+.||| +..+||+|+.|..|+||.+..+-. .....-...|+.+..|.+|.|+|..+- |+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg------il 144 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG------IL 144 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc------eE
Confidence 3445789999999999999 566899999999999999984431 000112344666889999999998775 66
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
..+..|++.+||+.+++.+..+.+|...|.++.|+.||
T Consensus 145 ~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG------------------------------------------ 182 (1012)
T KOG1445|consen 145 ASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDG------------------------------------------ 182 (1012)
T ss_pred EeccCceEEEEEcccCceeecccCCchhhhccccccCC------------------------------------------
Confidence 66778999999999999999999999999999999999
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc-eEEEEEEccCCCEEEEeeCC----CcEEEEECCC-Cc
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG-RVLSVTWSADGNMLYSGSSD----GYIRSWDAKL-GY 236 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~s~dg~~l~s~~~d----g~i~vwd~~~-g~ 236 (817)
.+|+++|.|..|+|||....... .+...+|.+ +=..+.|.-+-.+|++.+.+ ..|++||.+. +.
T Consensus 183 --------~llatscKdkqirifDPRa~~~p--iQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 183 --------KLLATSCKDKQIRIFDPRASMEP--IQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred --------ceEeeecCCcceEEeCCccCCCc--cccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 59999999999999999754433 256678875 34457787665577776654 5799999875 44
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCC
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR 282 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~ 282 (817)
.+.++.. .....|.--.|.||. .+++|-.+.++.++.+.
T Consensus 253 p~~tlel-------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 253 PVHTLEL-------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred cceeEEe-------ecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 5555554 344555556677777 45666667777777654
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.8e-29 Score=217.59 Aligned_cols=278 Identities=17% Similarity=0.200 Sum_probs=220.6
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCC
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG 274 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg 274 (817)
+.+++|.+.|.+|+|+.+|..|++|+.|+++.+|++..++...... .++|...|-.++|.|.. .+++++.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~------~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV------YRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc------ccCCCcchhhheeCCCCCcceEEecCCc
Confidence 6677899999999999999999999999999999998775544443 34788899999999876 899999999
Q ss_pred cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 275 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
+|++||.+.++++.......+.| .++|+|+|+++++++.|..|.+.|..+.+. .... ....
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~-----------------~~~~-~~~~ 148 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI-----------------VNEE-QFKF 148 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce-----------------eehh-cccc
Confidence 99999999999999887654444 578999999999999999999999877551 1100 0011
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCc
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 434 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 434 (817)
.+..
T Consensus 149 e~ne---------------------------------------------------------------------------- 152 (313)
T KOG1407|consen 149 EVNE---------------------------------------------------------------------------- 152 (313)
T ss_pred eeee----------------------------------------------------------------------------
Confidence 1111
Q ss_pred eeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcE-EEEEcCCc
Q 003467 435 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVK 513 (817)
Q Consensus 435 ~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~~~~~ 513 (817)
++++.++.+ +++...|.
T Consensus 153 --------------------------------------------------------------~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 153 --------------------------------------------------------------ISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred --------------------------------------------------------------eeecCCCCEEEEecCCce
Confidence 122222222 23333455
Q ss_pred eEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 003467 514 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 593 (817)
Q Consensus 514 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (817)
|.|..... -..+ ..+..|.....|+.|+|+|++||+|+.|..+.+||++..-+++.+.- +.
T Consensus 171 v~ILsyps---Lkpv-----~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----------ld 231 (313)
T KOG1407|consen 171 VEILSYPS---LKPV-----QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----------LD 231 (313)
T ss_pred EEEEeccc---cccc-----cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----------cc
Confidence 55554432 1111 44667777899999999999999999999999999998888888887 89
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 594 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 594 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
-+|..+.||.||++||+|++|..|-|=++++|...+.++. .++-..++|+| ...+||.++.|.
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecC-CCceeeEEecCC
Confidence 9999999999999999999999999999999999988863 45889999999 989999998653
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=231.62 Aligned_cols=294 Identities=17% Similarity=0.275 Sum_probs=242.3
Q ss_pred CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEE
Q 003467 201 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 279 (817)
Q Consensus 201 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iw 279 (817)
+.+..+.|..|+|||++|++|+.||-|.+||..+|+....+.........-+...|.|+.|+.|. .+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45667889999999999999999999999999999876655533322222477899999999999 79999999999999
Q ss_pred eCCCCeEEEEee-cCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 280 DSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 280 d~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
.+++|++++.|. .|+..|+|+.|+.|+..+++++.|.++++--+.+++ ++..+++|+.-|+.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----------------~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----------------CLKEFRGHSSYVNE 353 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----------------hHHHhcCccccccc
Confidence 999999999996 899999999999999999999999999999999998 78999999999999
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeee
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 438 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (817)
..|. +||. .+++++.||++++|+..+..-+...+
T Consensus 354 a~ft---------~dG~------------------------~iisaSsDgtvkvW~~KtteC~~Tfk------------- 387 (508)
T KOG0275|consen 354 ATFT---------DDGH------------------------HIISASSDGTVKVWHGKTTECLSTFK------------- 387 (508)
T ss_pred eEEc---------CCCC------------------------eEEEecCCccEEEecCcchhhhhhcc-------------
Confidence 9997 7775 99999999999999987643111000
Q ss_pred cceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEE
Q 003467 439 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 518 (817)
Q Consensus 439 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~ 518 (817)
T Consensus 388 -------------------------------------------------------------------------------- 387 (508)
T KOG0275|consen 388 -------------------------------------------------------------------------------- 387 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCceEEEeeecCCccccceeEEEEec-CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee
Q 003467 519 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
..+...+|..+..-| +-..++++....+|+|.++. |+.+++|..... ..+...
T Consensus 388 -----------------~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR--------EgGdFi 441 (508)
T KOG0275|consen 388 -----------------PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR--------EGGDFI 441 (508)
T ss_pred -----------------CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc--------cCCceE
Confidence 000111233443334 34567778888899999976 888888875322 456677
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEE
Q 003467 598 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 598 ~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
+.+.||.|.|+...+.|+.++.|...+|+...+++. |...|..++-+| ..+.||+-+.||.+++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-ccccccccccCc-ccchhhhhcccchhhhcC
Confidence 788999999999999999999999999998888866 445788999999 889999999999999994
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=257.53 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=216.9
Q ss_pred ceeeeeec-cCCCceEEEEECCCCCeEEEEecCCcEEEEecCC--------------------------------CCC--
Q 003467 3 IYRNSSID-WKPSPVVALATSADDSQVAAAREDGSLEIWLVSP--------------------------------GTS-- 47 (817)
Q Consensus 3 ~hr~r~~~-~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~--------------------------------~~~-- 47 (817)
++-+.-+. .|.++|.||.||+||+|||+||.||.|+||.+.. ...
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 34455556 9999999999999999999999999999998765 000
Q ss_pred ----------------------CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe
Q 003467 48 ----------------------GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ 105 (817)
Q Consensus 48 ----------------------~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 105 (817)
.......+.|| .+.|..|.||.++ + |+|++.|.||++|++...+|++.|.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn~-f------LLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGH-TADILDLSWSKNN-F------LLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhcc-chhheecccccCC-e------eEeccccccEEeecCCCcceeeEEe
Confidence 01123456677 7999999999876 2 9999999999999999999999998
Q ss_pred ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEE
Q 003467 106 SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIY 185 (817)
Q Consensus 106 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 185 (817)
|..-|+|++|+|-.+ +++++|+-||.||||
T Consensus 408 -HndfVTcVaFnPvDD-------------------------------------------------ryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDD-------------------------------------------------RYFISGSLDGKVRLW 437 (712)
T ss_pred -cCCeeEEEEecccCC-------------------------------------------------CcEeecccccceEEe
Confidence 999999999999775 499999999999999
Q ss_pred EecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC
Q 003467 186 RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 265 (817)
Q Consensus 186 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 265 (817)
++... .+.. ...-..-|++++|.|||+..+.|+.+|..++|+....+.............+.....|+.+.|.|..
T Consensus 438 sI~d~-~Vv~---W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~ 513 (712)
T KOG0283|consen 438 SISDK-KVVD---WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD 513 (712)
T ss_pred ecCcC-eeEe---ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC
Confidence 99743 3322 2233478999999999999999999999999999988888777765544333334489999999876
Q ss_pred --eEEEEcCCCcEEEEeCCCCeEEEEeecCccC--eeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 266 --TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD--VNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 266 --~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.++..+.|..|+|+|+++..++..|+++... -....|+.||++|++++.|..|++|+.....
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5999999999999999988899988875432 3456789999999999999999999986654
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=250.86 Aligned_cols=252 Identities=23% Similarity=0.332 Sum_probs=215.5
Q ss_pred cCCCceE---EEEEC-CCCCeEEEEecCCcEEEEecCCCCCC--cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 11 WKPSPVV---ALATS-ADDSQVAAAREDGSLEIWLVSPGTSG--WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 11 ~h~~~I~---~la~s-pdg~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
.|...|. ++..+ |.+++|.+||.||.|++|+....... -.+...+..| ...|..++...+++. |+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~H-sDWVNDiiL~~~~~t------lIS~ 91 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHH-SDWVNDIILCGNGKT------LISA 91 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhh-HhHHhhHHhhcCCCc------eEEe
Confidence 3445555 44454 46778999999999999998754321 1134455544 899999999999987 9999
Q ss_pred eCCCeEEEEECCCC--eEEEEEeecCceEEEEee-ecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 85 SIDGSVSEWDLYDL--KQKIVLQSIDFSIWQMAV-APSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 85 ~~d~~i~vwd~~~~--~~~~~~~~~~~~i~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
|.|.+|++|+...+ -++.++..|..-|.|+++ .++.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~----------------------------------------- 130 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN----------------------------------------- 130 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-----------------------------------------
Confidence 99999999999887 578889999999999999 5554
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCc-------eeEeeccC-CccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDE-------LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
.++|+|+-|+.|.+||++++.. ......+. ++...|.+++-++.|..+++|+..+.|++||.+
T Consensus 131 ---------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 131 ---------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred ---------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence 4899999999999999986632 11123344 889999999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
+++.+.++. +|...|..+..++|| +++++++||+|++||+...+++.++..|...|.++..+|+-+.+++|
T Consensus 202 t~~kimkLr--------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 202 TCKKIMKLR--------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred cccceeeee--------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 999999998 899999999999999 89999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEeeccc
Q 003467 313 GSDGQVILYKASCES 327 (817)
Q Consensus 313 ~~dg~i~iw~~~~~~ 327 (817)
+.||.|..=++.+..
T Consensus 274 ~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPA 288 (735)
T ss_pred CCCCcEEecccCCch
Confidence 999999998887753
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-27 Score=203.79 Aligned_cols=302 Identities=18% Similarity=0.208 Sum_probs=236.8
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCC----------CCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPG----------TSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~----------~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
....|++++|+|.|.+.|+|+...+.+|..+..- +..+.....-..||.++|.|.+|||+|++ |
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel------i 104 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL------I 104 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe------E
Confidence 4578999999999999999999999998754311 11222333445677999999999999998 9
Q ss_pred EEeeCCCeEEEEECCCCeE-----EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 82 FSSSIDGSVSEWDLYDLKQ-----KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
++++.|.+|++--++...+ -..+.-|.+.|..++|-.+....
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~--------------------------------- 151 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG--------------------------------- 151 (350)
T ss_pred EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC---------------------------------
Confidence 9999999999987654332 24567799999999998765321
Q ss_pred CCCccccccccccCCEEEEEe-CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 003467 157 SDSDELHEQSVVEDRRVALAC-DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g 235 (817)
+..|++++ .|-.|++-|...+..+ +.+.+|++.|.++ ++-+|-++++|+.|.+|+.||++-.
T Consensus 152 -------------~~il~s~gagdc~iy~tdc~~g~~~---~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 152 -------------GAILASAGAGDCKIYITDCGRGQGF---HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred -------------ceEEEecCCCcceEEEeecCCCCcc---eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 13666654 4666777777777777 8899999999987 4556889999999999999999998
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~ 314 (817)
.++..+........ -....|.++++.|.| .|++|-.|....+||++-+++++.+..|..+|.|+.|+|...++++++.
T Consensus 215 ~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred ceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc
Confidence 88888765432111 245789999999999 6889999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 315 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
|..|++-|+...-.... .+.....|...+..+.|. |..-
T Consensus 294 d~~ikltdlqgdla~el-------------~~~vv~ehkdk~i~~rwh---------~~d~------------------- 332 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAHEL-------------PIMVVAEHKDKAIQCRWH---------PQDF------------------- 332 (350)
T ss_pred cceEEEeecccchhhcC-------------ceEEEEeccCceEEEEec---------Cccc-------------------
Confidence 99999999876431100 233445677777777775 4332
Q ss_pred cCCCcEEEEecCCCeEEEEeCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
-+++.+.|.++.+|-++
T Consensus 333 -----sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 333 -----SFISSSADKTATLWALN 349 (350)
T ss_pred -----eeeeccCcceEEEeccC
Confidence 68899999999999764
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=221.07 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=209.7
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+..|.++|+|+|++ |.++|+|+.|-+|+|||+.... ....+..| .+.|++|.|.++-.. +.|++|+.||
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~----qlg~ll~H-agsitaL~F~~~~S~----shLlS~sdDG 107 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK----QLGILLSH-AGSITALKFYPPLSK----SHLLSGSDDG 107 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchh----hhcceecc-ccceEEEEecCCcch----hheeeecCCC
Confidence 47899999999998 9999999999999999999876 34555555 899999999998753 4599999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|.+|+....+++.++.+|.+.|+.++.+|.+
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~------------------------------------------------ 139 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG------------------------------------------------ 139 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCC------------------------------------------------
Confidence 99999999999999999999999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
++-++.+.|+.+++|++-+++.- +...+. + .-..+.|+|.|.+++.++.+ .|-+|.+.+......+.
T Consensus 140 --KLALsVg~D~~lr~WNLV~Gr~a-~v~~L~-~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~------ 206 (362)
T KOG0294|consen 140 --KLALSVGGDQVLRTWNLVRGRVA-FVLNLK-N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE------ 206 (362)
T ss_pred --ceEEEEcCCceeeeehhhcCccc-eeeccC-C--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh------
Confidence 46678899999999999866543 222232 2 23349999999999998887 89999998877776665
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEE--ecCCCEEEEEccCCcEEEEEeecc
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA--APSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
.+..+.++.|...+.|++|..++.|.+||..+..+...+.+|...|..+.+ .|++.+|++++.||.|++||+...
T Consensus 207 ---~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 207 ---NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 446688889998889999999999999999999999999999999999985 456889999999999999999876
Q ss_pred c
Q 003467 327 S 327 (817)
Q Consensus 327 ~ 327 (817)
.
T Consensus 284 ~ 284 (362)
T KOG0294|consen 284 T 284 (362)
T ss_pred c
Confidence 4
No 79
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=250.89 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=211.8
Q ss_pred CCceeeeeeccCC-------CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCc---------EEEEEEcCCCCCcEE
Q 003467 1 MPIYRNSSIDWKP-------SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGW---------HCQLTVHGDPKSRIS 64 (817)
Q Consensus 1 ~~~hr~r~~~~h~-------~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~---------~~~~~~~g~~~~~V~ 64 (817)
|.+-+.|.+.+.+ ..|+..++++|+..++++..+.....|+...+.... .....+.|| .+.|.
T Consensus 1 ~~~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH-~~~V~ 79 (493)
T PTZ00421 1 MSVSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQ-EGPII 79 (493)
T ss_pred CCcccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCC-CCCEE
Confidence 6677777776655 456777788887767777777777777765432100 001235666 78999
Q ss_pred EEEEee-cCCCCCCCceEEEeeCCCeEEEEECCCC-------eEEEEEeecCceEEEEeeecCCCccceeeccCccccCc
Q 003467 65 SLVWCH-AGKMGLPGGRLFSSSIDGSVSEWDLYDL-------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG 136 (817)
Q Consensus 65 ~l~~s~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (817)
+++|+| ++.+ |++++.|++|++||+.++ +++..+.+|...|.+++|+|++.
T Consensus 80 ~v~fsP~d~~~------LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--------------- 138 (493)
T PTZ00421 80 DVAFNPFDPQK------LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--------------- 138 (493)
T ss_pred EEEEcCCCCCE------EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC---------------
Confidence 999999 7766 999999999999999765 35678899999999999999863
Q ss_pred cccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC
Q 003467 137 YLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN 216 (817)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 216 (817)
++|++|+.|+.|+|||+.++..+ ..+.+|...|.+++|+|+|.
T Consensus 139 ----------------------------------~iLaSgs~DgtVrIWDl~tg~~~---~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 139 ----------------------------------NVLASAGADMVVNVWDVERGKAV---EVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred ----------------------------------CEEEEEeCCCEEEEEECCCCeEE---EEEcCCCCceEEEEEECCCC
Confidence 38999999999999999876554 67788999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCcee-EEEeEEecCC-eEEEEc----CCCcEEEEeCCCCe-EEEE
Q 003467 217 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC-IWSLLSLRCG-TLVSAD----STGSVQFWDSRHGT-LLQA 289 (817)
Q Consensus 217 ~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~-v~~v~~~~~~-~l~s~~----~dg~i~iwd~~~~~-~~~~ 289 (817)
+|++++.|+.|++||+++++.+..+. .|... +..+.|.+++ .+++++ .|+.|++||+++.. .+..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVE--------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEe--------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999999888776 45433 3456677776 555543 47899999998654 3444
Q ss_pred eecC-ccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccc-cCCCccceeEee
Q 003467 290 HSFH-KGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVA 362 (817)
Q Consensus 290 ~~~h-~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~ 362 (817)
...+ ...+....|+++++.|++++. |+.|++|++.++. .+.... .+...++++++.
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-----------------~~~~~~~~s~~~~~g~~~~ 312 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-----------------LTFCSSYSSVEPHKGLCMM 312 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-----------------eEEEeeccCCCCCcceEec
Confidence 3333 345666789999999999884 9999999998876 233322 345567788876
No 80
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.3e-28 Score=244.21 Aligned_cols=282 Identities=20% Similarity=0.343 Sum_probs=243.1
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEE-EEEeecCCCCCCCceEEEe
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISS-LVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~-l~~s~~~~~~~~~~~l~s~ 84 (817)
.+-+.+|.+.|.++++.+.. .+++++.||++++|+-...+ |.-.+.+.++ .+-|.. +++.+..+ +||++|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~-~g~i~~~i~y~e~~~-----~~l~~g 77 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ--YLETHAFEGP-KGFIANSICYAESDK-----GRLVVG 77 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcc--cccceecccC-cceeeccceeccccC-----cceEee
Confidence 34568999999999987665 78888999999999976654 3233566666 566666 88887333 579999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+.|.+|.+|.+.+..++..+.+|...|.+++...++
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-------------------------------------------- 113 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-------------------------------------------- 113 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcC--------------------------------------------
Confidence 999999999999999999999999999999988887
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
.+++|+-|.++++|... +.. ..+.+|+..|++++.-|++ .++|||.|.+|++|.- ++.++.+.
T Consensus 114 -------~~iSgSWD~TakvW~~~--~l~---~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-- 176 (745)
T KOG0301|consen 114 -------TLISGSWDSTAKVWRIG--ELV---YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-- 176 (745)
T ss_pred -------ceEecccccceEEecch--hhh---cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc--
Confidence 79999999999999874 232 5699999999999999998 7899999999999985 88888888
Q ss_pred cCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 245 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
+|..+|..+++.+++.|++++.||.|++|++ +|..+.++.+|+.-|.+++..+++..++++|.|+++++|+..
T Consensus 177 ------gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 177 ------GHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ------cchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 8999999999999999999999999999999 699999999999999999988888899999999999999977
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
. +...+...+..|.+..+. ++| -+++|
T Consensus 250 e-------------------~~q~I~lPttsiWsa~~L---------~Ng-------------------------DIvvg 276 (745)
T KOG0301|consen 250 E-------------------CVQVITLPTTSIWSAKVL---------LNG-------------------------DIVVG 276 (745)
T ss_pred c-------------------eEEEEecCccceEEEEEe---------eCC-------------------------CEEEe
Confidence 3 555666666677777765 555 69999
Q ss_pred cCCCeEEEEeCCc
Q 003467 405 GDDTKLFAYCANE 417 (817)
Q Consensus 405 ~~dg~i~~~~~~~ 417 (817)
+.||.|++|....
T Consensus 277 ~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 277 GSDGRVRVFTVDK 289 (745)
T ss_pred ccCceEEEEEecc
Confidence 9999999998764
No 81
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.96 E-value=9.7e-28 Score=237.72 Aligned_cols=491 Identities=17% Similarity=0.209 Sum_probs=337.9
Q ss_pred ceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 3 IYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 3 ~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
+.+.|+...| .|..+||-|||..|+.+-. ..+.|||+..|. +..++.|| +..|.+++|+.||+. +|
T Consensus 4 ~~~~r~~~~h--ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~----llqtLKgH-KDtVycVAys~dGkr------FA 69 (1081)
T KOG1538|consen 4 VLTWRDKAEH--CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT----LLQPLKGH-KDTVYCVAYAKDGKR------FA 69 (1081)
T ss_pred hhhhhccccc--chheeEECCCCceEEEecC-CEEEEEeCCCcc----cccccccc-cceEEEEEEccCCce------ec
Confidence 4567787778 8999999999999988754 569999999998 58899998 899999999999987 99
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
||+.|..|.+|+-.- +-+..+ .|+..|.||.|+|-..
T Consensus 70 SG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h----------------------------------------- 106 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITH----------------------------------------- 106 (1081)
T ss_pred cCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHH-----------------------------------------
Confidence 999999999999543 222223 4999999999999873
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
.|++++- ...-+|......... .....+|.+++|..||++++.|-.||+|.+-+ .+|+...++.
T Consensus 107 ---------~LasCsL-sdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~ 170 (1081)
T KOG1538|consen 107 ---------QLASCSL-SDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIE 170 (1081)
T ss_pred ---------Hhhhcch-hhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEe
Confidence 4555443 456788876332211 12346899999999999999999999999987 4677666665
Q ss_pred eecCCCCCCCceeEEEeEEecCC------eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG------TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.+ .+...+||+++|+|.. .++..+...++.++.+. |+.+..-+.-.-+..|+.+.++|.+++.||.|+
T Consensus 171 Rp-----gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 171 RP-----GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred CC-----CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 32 1578899999999864 68899999999999987 888876666677889999999999999999999
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccC
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 396 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (817)
.+.+|....- .+.++....+.|..++.. |+++
T Consensus 245 ~L~~fTR~Gv------------------rLGTvg~~D~WIWtV~~~---------PNsQ--------------------- 276 (1081)
T KOG1538|consen 245 QLSLFTRDGV------------------RLGTVGEQDSWIWTVQAK---------PNSQ--------------------- 276 (1081)
T ss_pred ceEEEeecCe------------------EEeeccccceeEEEEEEc---------cCCc---------------------
Confidence 9999987654 355666677778888887 7776
Q ss_pred CCcEEEEecCCCeEEEEeCCccccc---CC--------------cccC-CCCCCCceeeecceeecCCeEEEEEeCCeEE
Q 003467 397 GVPMLISAGDDTKLFAYCANEFTKF---SP--------------HEIC-PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 458 (817)
Q Consensus 397 ~~~~l~s~~~dg~i~~~~~~~~~~~---~~--------------~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~ 458 (817)
.++.|..||+|..|++.....- +. +-+. ....-.....+..+++ -+.++.++-+..+.
T Consensus 277 ---~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai-YrnrLAVQLpeki~ 352 (1081)
T KOG1538|consen 277 ---YVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI-YRNRLAVQLPEKIL 352 (1081)
T ss_pred ---eEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh-hhhhheecccceEE
Confidence 9999999999999988532110 00 0000 0000000111222222 13345556666788
Q ss_pred EEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc
Q 003467 459 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR 538 (817)
Q Consensus 459 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
+|.+..+.... .-++++.+-.....|.-+--.+..++.+.+..+..+++.. ...+.|.+...
T Consensus 353 iYel~se~~~~------------mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~G--vk~ReW~M~S~---- 414 (1081)
T KOG1538|consen 353 IYELYSEDLSD------------MHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSG--VKEREWQMESL---- 414 (1081)
T ss_pred EEecccccccc------------chhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccc--hhhhhhhHHHH----
Confidence 88776443221 1112221111222232233345677778888877777753 12233332220
Q ss_pred cccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEE
Q 003467 539 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 618 (817)
Q Consensus 539 ~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~ 618 (817)
...+.-+-=-+...-|++|..+|.|+-.=+++.-++--.. ....|.|+.++...+.||+.++.++..
T Consensus 415 -iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~------------~~tAvrClDINA~R~kLAvVDD~~~c~ 481 (1081)
T KOG1538|consen 415 -IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK------------QATAVRCLDINASRKKLAVVDDNDTCL 481 (1081)
T ss_pred -HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec------------ccceeEEeeccCCcceEEEEccCCeEE
Confidence 0001111111234567888888876554455443333223 467899999999999999999999999
Q ss_pred EEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeE
Q 003467 619 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 661 (817)
Q Consensus 619 vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i 661 (817)
++|+.+++....-+ .+.+++|+-...++|...+. |.+
T Consensus 482 v~DI~t~elL~QEp-----g~nSV~wNT~~E~MlcfT~~-g~L 518 (1081)
T KOG1538|consen 482 VYDIDTKELLFQEP-----GANSVAWNTQCEDMLCFTGG-GYL 518 (1081)
T ss_pred EEEccCCceEeecC-----CCceEEeeccccceEEEecC-Cce
Confidence 99999998754432 57889999855666666554 544
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-27 Score=222.43 Aligned_cols=256 Identities=19% Similarity=0.195 Sum_probs=206.0
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
...|.++... +++ ++++++||++++||. .|+++..+.+|.++|.++++.-..+.-
T Consensus 105 dDWVSsv~~~--~~~------IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~---------------- 159 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKW------ILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSS---------------- 159 (423)
T ss_pred hhhhhhhccc--Cce------EEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCcc----------------
Confidence 5677777776 555 999999999999995 578899999999999988876544211
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce-eEeeccCCccceEEEEEEccCCCEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNML 218 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l 218 (817)
..+++++.|.++++|.++.+... ...+...||+..|.+++..++|.++
T Consensus 160 -------------------------------~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~ 208 (423)
T KOG0313|consen 160 -------------------------------CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRF 208 (423)
T ss_pred -------------------------------ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeE
Confidence 27999999999999999854332 2234455999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCc--eEEEEEe---------ecC------CCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 219 YSGSSDGYIRSWDAKLGY--EIYRITV---------GLG------GLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~--~~~~~~~---------~~~------~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
++|+.|.+|.+|+..+.. .+..... ... ....+|..+|.++.|++.+.+.+++.|.+|+.||+
T Consensus 209 ~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 209 CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence 999999999999932110 0000000 000 01237999999999999889999999999999999
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEe
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 361 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 361 (817)
.++..+.++.+ ...++|+..+|..++|++|+.|..|++||.+++.... ...++.+|.+.|.++.+
T Consensus 289 etg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~--------------v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 289 ETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV--------------VSQSLIGHKNWVSSVKW 353 (423)
T ss_pred ecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce--------------eEEeeecchhhhhheec
Confidence 99999988876 6789999999999999999999999999998875211 56788999999999999
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+ |... .+|++|+.|+++++||.+..
T Consensus 354 s---------p~~~-----------------------~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 354 S---------PTNE-----------------------FQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred C---------CCCc-----------------------eEEEEEecCCeEEEEEeccC
Confidence 7 5443 48999999999999999863
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=239.94 Aligned_cols=274 Identities=21% Similarity=0.316 Sum_probs=238.6
Q ss_pred EEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC
Q 003467 19 LATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL 98 (817)
Q Consensus 19 la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 98 (817)
+.+| ..+.||+|.. ..|.+|+..+++. ......+ ...|+++.|+++|.+ |+.|..+|.|.+||..+.
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v----~~l~~~~-~~~vtSv~ws~~G~~------LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSV----TELCSFG-EELVTSVKWSPDGSH------LAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCce----EEeEecC-CCceEEEEECCCCCE------EEEeecCCeEEEEehhhc
Confidence 4555 4568898865 5799999999872 3333333 789999999999998 999999999999999999
Q ss_pred eEEEEEee-cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 99 KQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 99 ~~~~~~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
+.+..+.+ |...|-+++|+. ..+.+|+
T Consensus 250 k~~~~~~~~h~~rvg~laW~~----------------------------------------------------~~lssGs 277 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWNS----------------------------------------------------SVLSSGS 277 (484)
T ss_pred cccccccCCcCceeEEEeccC----------------------------------------------------ceEEEec
Confidence 99999998 999999999993 2799999
Q ss_pred CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEE
Q 003467 178 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 257 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~ 257 (817)
.++.|..+|+...+... ..+.+|...|..+.|++|+.+||+|+.|+.+.|||....+.+..+. .|...|.
T Consensus 278 r~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~--------~H~aAVK 347 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT--------EHTAAVK 347 (484)
T ss_pred CCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe--------ccceeee
Confidence 99999999998766553 3588999999999999999999999999999999998888888887 7999999
Q ss_pred EeEEecCC--eEEEEc--CCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE--ccCCcEEEEEeecccCCCC
Q 003467 258 SLLSLRCG--TLVSAD--STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST--GSDGQVILYKASCESIGPN 331 (817)
Q Consensus 258 ~v~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~ 331 (817)
+++|+|-. .||+|+ .|++|++||..+|+.+..+.. ...|..|.|++..+.|+++ ..++.|.+|+..+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---- 422 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---- 422 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc----
Confidence 99999854 788764 589999999999999988865 6789999999999777764 447899999999877
Q ss_pred CCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEE
Q 003467 332 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 411 (817)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 411 (817)
.+..+.+|+..|..++++ ||+. .+++|+.|.+++
T Consensus 423 -------------~~~~l~gH~~RVl~la~S---------Pdg~------------------------~i~t~a~DETlr 456 (484)
T KOG0305|consen 423 -------------LVAELLGHTSRVLYLALS---------PDGE------------------------TIVTGAADETLR 456 (484)
T ss_pred -------------eeeeecCCcceeEEEEEC---------CCCC------------------------EEEEecccCcEE
Confidence 788999999999999998 8886 999999999999
Q ss_pred EEeCCcc
Q 003467 412 AYCANEF 418 (817)
Q Consensus 412 ~~~~~~~ 418 (817)
+|++-..
T Consensus 457 fw~~f~~ 463 (484)
T KOG0305|consen 457 FWNLFDE 463 (484)
T ss_pred eccccCC
Confidence 9998653
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.2e-27 Score=252.53 Aligned_cols=307 Identities=19% Similarity=0.280 Sum_probs=246.5
Q ss_pred CCceeEEEeEEecCC-eEEEEc--CCCcEEEEeCCC------------CeEEEEeecCccCeeEEEEecCCCEEEEEccC
Q 003467 251 GPELCIWSLLSLRCG-TLVSAD--STGSVQFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
.++..|.++..+||| .+++|+ .||.+.||+.+. .+.+.++..|.+.|.|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 355679999999999 799999 899999998753 23456778899999999999999999999999
Q ss_pred CcEEEEEeecccCCCCC-CCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 316 GQVILYKASCESIGPND-GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
+.|.+|+.........- ..-.....++|..+..+++|..+|..++|+ |++.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---------p~~~------------------- 142 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---------PDDS------------------- 142 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---------CCcc-------------------
Confidence 99999999851110000 001234568899999999999999999998 8886
Q ss_pred cCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 474 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 474 (817)
+|++++.|++|.+|+..++...
T Consensus 143 -----~lvS~s~DnsViiwn~~tF~~~----------------------------------------------------- 164 (942)
T KOG0973|consen 143 -----LLVSVSLDNSVIIWNAKTFELL----------------------------------------------------- 164 (942)
T ss_pred -----EEEEecccceEEEEccccceee-----------------------------------------------------
Confidence 9999999999999999876421
Q ss_pred CCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeee-----cCCccccceeEEEE
Q 003467 475 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR-----QLPRKLQFAHSMIF 548 (817)
Q Consensus 475 ~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~f 548 (817)
+....|...|..+.|.|-|+++|+ ++|.++++|+... |.+.+. +-.........+.|
T Consensus 165 ----------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-------w~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 165 ----------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-------WGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred ----------eeeecccccccceEECCccCeeeeecCCceEEEEEccc-------ceeeEeeccchhhCCCcceeeeccc
Confidence 122334467888999999999999 7889999999643 222221 11112236788999
Q ss_pred ecCCCEEEEEec----CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccC-----CC------------E
Q 003467 549 SYDSSQLIIAGH----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQ------------W 607 (817)
Q Consensus 549 spd~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d-----g~------------~ 607 (817)
||||++|++... -.++.|.+-.+++.-..|-+ |.+++.++.|+|- .+ .
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----------CCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 999999998743 33788999888888888888 8999999999981 11 6
Q ss_pred EEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccc
Q 003467 608 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 672 (817)
Q Consensus 608 la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~ 672 (817)
+|+|+.|++|.||.....+............|..|+|+| ||-.|++++.||+|.++.++.++++
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 899999999999999888877666666668999999999 9999999999999999999888765
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=225.12 Aligned_cols=284 Identities=19% Similarity=0.278 Sum_probs=246.2
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
-.|+++...|....+++|+.|..+.++|...++ ...++.|| ...|+.+.|+|+... +++++.|..|+||
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q----~l~~~~Gh-~kki~~v~~~~~~~~------v~~aSad~~i~vw 288 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ----ILATLKGH-TKKITSVKFHKDLDT------VITASADEIIRVW 288 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh----hhhhccCc-ceEEEEEEeccchhh------eeecCCcceEEee
Confidence 468999999988899999999999999999887 57888888 899999999999988 9999999999999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
.............|.++|..+..+|.| .++
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tg--------------------------------------------------eYl 318 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTG--------------------------------------------------EYL 318 (506)
T ss_pred ccccccCccccccccccceeeeeccCC--------------------------------------------------cEE
Confidence 999888888899999999999999999 599
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
++++.||+..+.|++++..+..... ....-.+++.+|+|||..+.+|..||.|++||+.++..+.++. +|.
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp--------ght 389 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP--------GHT 389 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC--------CCC
Confidence 9999999999999998877643211 1233469999999999999999999999999999999888887 799
Q ss_pred eeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCC
Q 003467 254 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN 331 (817)
Q Consensus 254 ~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 331 (817)
++|.+++|+.+| .|++++.|+.|++||++.-+..+++.... ..+.++.|.+.|++|+.+|.|=.|++++-.+
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~------ 463 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT------ 463 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc------
Confidence 999999999999 69999999999999999887777776432 3699999999999999997775555554333
Q ss_pred CCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEE
Q 003467 332 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF 411 (817)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 411 (817)
.+|..+..+..|.+...++.|. ... .++++++.|..++
T Consensus 464 ---------k~W~~~~~~~~~sg~st~v~Fg---------~~a------------------------q~l~s~smd~~l~ 501 (506)
T KOG0289|consen 464 ---------KSWTEIKELADHSGLSTGVRFG---------EHA------------------------QYLASTSMDAILR 501 (506)
T ss_pred ---------ccceeeehhhhcccccceeeec---------ccc------------------------eEEeeccchhheE
Confidence 4699999999999888999885 333 3999999999998
Q ss_pred EEeC
Q 003467 412 AYCA 415 (817)
Q Consensus 412 ~~~~ 415 (817)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=248.14 Aligned_cols=242 Identities=23% Similarity=0.307 Sum_probs=215.1
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEE-EeecCceEEEEeeecCCCccceeeccCc
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSD 131 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~~~~~~~~ 131 (817)
..+.+++...+.+..|. + .+ +++++.|++|.+||..++..+.. +.+|.+.||++++..-+
T Consensus 201 ~~~~~~~~~~~~~~q~~-~-~~------~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~----------- 261 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH-D-GF------FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG----------- 261 (537)
T ss_pred eeecccCcchhhhheee-c-Ce------EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-----------
Confidence 34444667889999998 3 23 99999999999999999999988 99999999999998733
Q ss_pred cccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEE
Q 003467 132 HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW 211 (817)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 211 (817)
..|++|+.|.++++||..++... ..+.+|.+.|.++..
T Consensus 262 ---------------------------------------~~lvsgS~D~t~rvWd~~sg~C~---~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 262 ---------------------------------------DKLVSGSTDKTERVWDCSTGECT---HSLQGHTSSVRCLTI 299 (537)
T ss_pred ---------------------------------------CEEEEEecCCcEEeEecCCCcEE---EEecCCCceEEEEEc
Confidence 49999999999999999988887 889999999999987
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 212 SADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 212 s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
. +.++++|+.|.+|++|+++++..+..+. +|...|.++... ...+++|+.||+|++||..+++++.++.
T Consensus 300 ~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 300 D--PFLLVSGSRDNTVKVWDVTNGACLNLLR--------GHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred c--CceEeeccCCceEEEEeccCcceEEEec--------cccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 5 4578889999999999999999999987 699999999998 6699999999999999999999999999
Q ss_pred cCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc-cCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCC
Q 003467 292 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE-SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 370 (817)
Q Consensus 292 ~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 370 (817)
+|...|.++.+.+. ..+++|+.|++|++||+.+. + ++.++.+|..-+..+.+.
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~-----------------c~~tl~~h~~~v~~l~~~-------- 422 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK-----------------CIHTLQGHTSLVSSLLLR-------- 422 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh-----------------hhhhhcCCcccccccccc--------
Confidence 99999999988765 88999999999999999998 5 788999999988777762
Q ss_pred CCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 371 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+ +.|++++.|+.|++||..+..
T Consensus 423 ---~------------------------~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 423 ---D------------------------NFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred ---c------------------------ceeEeccccccEEEeecccCc
Confidence 2 399999999999999887643
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.7e-28 Score=210.75 Aligned_cols=283 Identities=18% Similarity=0.226 Sum_probs=227.7
Q ss_pred EEEEECCC-CCeEEEE-------ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 17 VALATSAD-DSQVAAA-------REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 17 ~~la~spd-g~~la~~-------~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
.++.|||= .++||++ ..+|.+.|-++...+-. .....+.- +..+-.++|++... +.+++++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-~e~~s~d~--~D~LfdV~Wse~~e-----~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-QECQSYDT--EDGLFDVAWSENHE-----NQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-EEEEeeec--ccceeEeeecCCCc-----ceEEEEecCc
Confidence 46788882 3455554 24689999999643321 11222222 57899999998865 4589999999
Q ss_pred eEEEEECC-CCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 89 SVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 89 ~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
++++||+. ...+++.++.|..+|.++.|++-..
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r---------------------------------------------- 117 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR---------------------------------------------- 117 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccc----------------------------------------------
Confidence 99999965 3457889999999999999998764
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
+.+++++-|++|++|+...++.+ +++.+|...|...+|+|. .+.+++++.|+++++||++..-....+.
T Consensus 118 ---~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---- 187 (311)
T KOG0277|consen 118 ---RIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---- 187 (311)
T ss_pred ---eeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE----
Confidence 36777799999999999866666 889999999999999994 6789999999999999998644444466
Q ss_pred CCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYK 322 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~ 322 (817)
.|...+.++.|+.-. .+++|+.|+.|+.||++. .+++..+.+|.-.|..+.|||.. ..|++++.|-++++|+
T Consensus 188 ----ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 188 ----AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ----eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 588899999998644 799999999999999986 45688899999999999999965 5788999999999999
Q ss_pred eecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 402 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 402 (817)
...+.. .+.+...|+.-|..+.+++ - ....++
T Consensus 264 ~~~~ds----------------~~e~~~~HtEFv~g~Dws~---------~-----------------------~~~~vA 295 (311)
T KOG0277|consen 264 PERQDS----------------AIETVDHHTEFVCGLDWSL---------F-----------------------DPGQVA 295 (311)
T ss_pred cccchh----------------hhhhhhccceEEecccccc---------c-----------------------cCceee
Confidence 986543 5667788999999998862 1 124899
Q ss_pred EecCCCeEEEEeC
Q 003467 403 SAGDDTKLFAYCA 415 (817)
Q Consensus 403 s~~~dg~i~~~~~ 415 (817)
+.+.|+.+++|+.
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999984
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5e-28 Score=232.33 Aligned_cols=280 Identities=19% Similarity=0.264 Sum_probs=231.2
Q ss_pred CCceEEEEECCCCCe-EEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 13 PSPVVALATSADDSQ-VAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 13 ~~~I~~la~spdg~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
++.|++++|||...+ +|+++. -.+.||+..+... ..++.-. +..|.++.|..||++ |+.|...|.|+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~----~k~~srF-k~~v~s~~fR~DG~L------laaGD~sG~V~ 93 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV----RKTFSRF-KDVVYSVDFRSDGRL------LAAGDESGHVK 93 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhh----hhhHHhh-ccceeEEEeecCCeE------EEccCCcCcEE
Confidence 478999999996543 666554 4699999887662 4444444 678999999999998 99999999999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
++|..+...++.+.+|..+|..+.|+|++. .
T Consensus 94 vfD~k~r~iLR~~~ah~apv~~~~f~~~d~-------------------------------------------------t 124 (487)
T KOG0310|consen 94 VFDMKSRVILRQLYAHQAPVHVTKFSPQDN-------------------------------------------------T 124 (487)
T ss_pred EeccccHHHHHHHhhccCceeEEEecccCC-------------------------------------------------e
Confidence 999887777889999999999999999884 3
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCC-ceEEEEEeecCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLG 249 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~~~~~ 249 (817)
.+++|++|+.+++||+.+... ...+.+|+..|.|.+|+|... .++||+.||.|++||.+.. ..+.++
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------- 193 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------- 193 (487)
T ss_pred EEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--------
Confidence 899999999999999986653 368999999999999999755 7899999999999999876 555555
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
.|..+|..+.+.|.|.+++......|++||+-+ ++.+..+..|...|+|+++..+++.|++++-|+.|++|++.+-+
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K- 271 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK- 271 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE-
Confidence 499999999999998555555566899999995 55566666699999999999999999999999999999976544
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 408 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 408 (817)
.+.... -.++|.+++++ |+++ .++.|..+|
T Consensus 272 ----------------vv~s~~-~~~pvLsiavs---------~dd~------------------------t~viGmsnG 301 (487)
T KOG0310|consen 272 ----------------VVHSWK-YPGPVLSIAVS---------PDDQ------------------------TVVIGMSNG 301 (487)
T ss_pred ----------------EEEeee-cccceeeEEec---------CCCc------------------------eEEEecccc
Confidence 344433 35679999987 7775 999999999
Q ss_pred eEEEEeCC
Q 003467 409 KLFAYCAN 416 (817)
Q Consensus 409 ~i~~~~~~ 416 (817)
.+.+-+..
T Consensus 302 lv~~rr~~ 309 (487)
T KOG0310|consen 302 LVSIRRRE 309 (487)
T ss_pred eeeeehhh
Confidence 88876443
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=243.02 Aligned_cols=237 Identities=20% Similarity=0.323 Sum_probs=204.2
Q ss_pred EEEeeCCCeEEEEECCCCe------EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 81 LFSSSIDGSVSEWDLYDLK------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
|++||.||.|++|+...-. .+.+++.|...|..++...++
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~---------------------------------- 85 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG---------------------------------- 85 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC----------------------------------
Confidence 9999999999999986432 367888899999999888877
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEE-ccCCCEEEEeeCCCcEEEEECC
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW-SADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
+.|++++.|-+|++|+...+. -....++..|..-|.|+++ .++...+|+|+-|+.|.+||+.
T Consensus 86 ----------------~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 86 ----------------KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ----------------CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 589999999999999998553 2334789999999999999 8888999999999999999999
Q ss_pred CCc--eEEEEEeec-CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEE
Q 003467 234 LGY--EIYRITVGL-GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV 309 (817)
Q Consensus 234 ~g~--~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 309 (817)
+|. .+.++.... .....++...|++++..+.| .|++|+..+.+++||.++++.+..+.+|+..|.++..++||+.+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL 228 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence 883 333332211 11223788899999999999 68999999999999999999999999999999999999999999
Q ss_pred EEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 310 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
++++.||+|++||+...+ ++.++..|...|.++..+ |+=+
T Consensus 229 ls~sSDgtIrlWdLgqQr-----------------Cl~T~~vH~e~VWaL~~~---------~sf~-------------- 268 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQR-----------------CLATYIVHKEGVWALQSS---------PSFT-------------- 268 (735)
T ss_pred eecCCCceEEeeeccccc-----------------eeeeEEeccCceEEEeeC---------CCcc--------------
Confidence 999999999999999888 889999999999999986 3332
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
.+++|+.||.|..-|+.+.
T Consensus 269 ----------~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 269 ----------HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ----------eEEecCCCCcEEecccCCc
Confidence 9999999999999888764
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.9e-27 Score=251.05 Aligned_cols=306 Identities=16% Similarity=0.183 Sum_probs=247.7
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEe--cCCcEEEEecCCCC-------C-CcEEEEEEcCCCCCcEEEEEEee
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAR--EDGSLEIWLVSPGT-------S-GWHCQLTVHGDPKSRISSLVWCH 70 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~--~dg~i~iwd~~~~~-------~-~~~~~~~~~g~~~~~V~~l~~s~ 70 (817)
|-+-.-.++..+...|.+++.+|||..+|+|+ .||.+.||+...-- . ......++..| .+.|+|+.|+|
T Consensus 1 M~l~kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h-~~sv~CVR~S~ 79 (942)
T KOG0973|consen 1 MKLLKPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDH-DGSVNCVRFSP 79 (942)
T ss_pred CceecccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccc-cCceeEEEECC
Confidence 33444445566667899999999999999999 89999999976311 0 11223344444 89999999999
Q ss_pred cCCCCCCCceEEEeeCCCeEEEEECCC------------------CeEEEEEeecCceEEEEeeecCCCccceeeccCcc
Q 003467 71 AGKMGLPGGRLFSSSIDGSVSEWDLYD------------------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDH 132 (817)
Q Consensus 71 ~~~~~~~~~~l~s~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~ 132 (817)
||++ ||+||+|+.|.+|+... .++...+.+|.+.|..++|+|++
T Consensus 80 dG~~------lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~------------ 141 (942)
T KOG0973|consen 80 DGSY------LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD------------ 141 (942)
T ss_pred CCCe------EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc------------
Confidence 9998 99999999999999772 23668889999999999999988
Q ss_pred ccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc
Q 003467 133 IGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS 212 (817)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 212 (817)
.+||+++.|+.|.||+..+.+.+ +.+.+|.+.|-.+.|.
T Consensus 142 --------------------------------------~~lvS~s~DnsViiwn~~tF~~~---~vl~~H~s~VKGvs~D 180 (942)
T KOG0973|consen 142 --------------------------------------SLLVSVSLDNSVIIWNAKTFELL---KVLRGHQSLVKGVSWD 180 (942)
T ss_pred --------------------------------------cEEEEecccceEEEEccccceee---eeeecccccccceEEC
Confidence 49999999999999999877544 8999999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC----CCcEEEEeCCCCeEE
Q 003467 213 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS----TGSVQFWDSRHGTLL 287 (817)
Q Consensus 213 ~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~----dg~i~iwd~~~~~~~ 287 (817)
|-|+++++-+.|++|++|+..+-.....+..+... ......+..+.|+||| .|++... ..++.|.+-.+.+.-
T Consensus 181 P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 181 PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD 258 (942)
T ss_pred CccCeeeeecCCceEEEEEcccceeeEeeccchhh--CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee
Confidence 99999999999999999998877777777754332 2456778899999999 5655432 345889888888888
Q ss_pred EEeecCccCeeEEEEecC-----CC------------EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccc
Q 003467 288 QAHSFHKGDVNALAAAPS-----HN------------RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~-----~~------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
..+-+|.+++.+++|+|. .+ .+++|+.|++|.+|.....+. ......
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP----------------l~vi~~ 322 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP----------------LFVIHN 322 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc----------------hhhhhh
Confidence 899999999999999972 11 577899999999999876652 222334
Q ss_pred cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 351 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 351 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.-...|..++|+ |||. .|+.++.||+|.+....+
T Consensus 323 lf~~SI~DmsWs---------pdG~------------------------~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 323 LFNKSIVDMSWS---------PDGF------------------------SLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhcCceeeeeEc---------CCCC------------------------eEEEEecCCeEEEEEcch
Confidence 446779999998 8887 999999999999998875
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=230.23 Aligned_cols=206 Identities=16% Similarity=0.252 Sum_probs=177.4
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeec
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
+...+..| .+.|..+.|-++... |++++.|..|.+|++..++ .+.++.+-.++|..+.|.+++
T Consensus 167 ~~~~ld~h-~gev~~v~~l~~sdt------latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-------- 231 (459)
T KOG0288|consen 167 ALFVLDAH-EGEVHDVEFLRNSDT------LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-------- 231 (459)
T ss_pred hhhhhhcc-ccccceeEEccCcch------hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC--------
Confidence 34455555 789999999999766 9999999999999988776 667888888999999999998
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEE
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLS 208 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 208 (817)
..+++++.|+.+++|++...... .+|.+|++.|++
T Consensus 232 ------------------------------------------~~~iAas~d~~~r~Wnvd~~r~~---~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 232 ------------------------------------------KHVIAASNDKNLRLWNVDSLRLR---HTLSGHTDKVTA 266 (459)
T ss_pred ------------------------------------------ceEEeecCCCceeeeeccchhhh---hhhcccccceee
Confidence 48889999999999999866665 899999999999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEE
Q 003467 209 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ 288 (817)
Q Consensus 209 v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (817)
+.|......+++|+.|.+|++||+..+.+..++. ....+.+|... ...+++|..|++|++||.++..+..
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec-ceeeeecccccceEEEeccCCceee
Confidence 9999887779999999999999999988887775 23344555554 3478999999999999999999999
Q ss_pred EeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 289 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 289 ~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
....+. .|+++..++++..|.+++.|.++.+.|+.+..
T Consensus 337 sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 337 SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred EeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 998865 99999999999999999999999998887654
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=229.86 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=210.1
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+.+|...|+++++-|.|.+|++|+.|.+|+.||+..........+.+.-.....|.+++|++.|.. |++.+...
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~------iLvvsg~a 236 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ------ILVVSGSA 236 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe------EEEEecCc
Confidence 578899999999999999999999999999999986543222233444334568999999999987 88888888
Q ss_pred eEEEEECCCCeEE------------EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 89 SVSEWDLYDLKQK------------IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 89 ~i~vwd~~~~~~~------------~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
..+++|-...+.. ...++|...++|.+|+|+..
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k----------------------------------- 281 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK----------------------------------- 281 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-----------------------------------
Confidence 8999996654433 33467899999999999985
Q ss_pred CCCccccccccccCCEEEEEeCCCcEEEEEecCCC-ceeEeec--cCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 157 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRS--LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
+.+++++.||++||||+.... ++..++. ..+..-.++.++|++||++||+|+.||.|.+|+..
T Consensus 282 --------------~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 282 --------------EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred --------------cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC
Confidence 389999999999999997433 2322222 22344578999999999999999999999999974
Q ss_pred CCceEEEEEeecCCCCCCCce--eEEEeEEecCC-eEEEEcCCCcEEEEeCCCC-eEEEEeecC--ccCeeEEEEecCCC
Q 003467 234 LGYEIYRITVGLGGLGSGPEL--CIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-TLLQAHSFH--KGDVNALAAAPSHN 307 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~h--~~~v~~l~~s~~~~ 307 (817)
....-..+... ..|.. .|.++.|++|| +|++-+.|+++++||++.. +++....+- .-+-+.++|||+.+
T Consensus 348 ~~~v~p~~~vk-----~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 348 SRTVRPVMKVK-----DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred CcccccceEee-----eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 33222222211 14555 89999999999 7999999999999999864 444444332 23456789999999
Q ss_pred EEEEEcc------CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 308 RVFSTGS------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 308 ~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.|++|.. .|.+.+||..+.. .+..+...+..|..+.|.
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d-----------------~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLD-----------------TVYKIDISTASVVRCLWH 466 (641)
T ss_pred EEEecccccCCCCCceEEEEecccee-----------------eEEEecCCCceEEEEeec
Confidence 9998754 5779999987766 566666667777777776
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6e-27 Score=206.38 Aligned_cols=267 Identities=12% Similarity=0.146 Sum_probs=228.2
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
|-+++|.+.|.+++|+.+|.+||+|+.|+++.||++...+. .......|| .+.|..++|.|... .++++++.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~~~~~~~gh-~~svdql~w~~~~~-----d~~atas~ 85 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--RKELVYRGH-TDSVDQLCWDPKHP-----DLFATASG 85 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh--hhhhcccCC-CcchhhheeCCCCC-----cceEEecC
Confidence 66789999999999999999999999999999999987753 234566677 68999999998754 45999999
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
|.+|++||..++++.......++.| .+.|+|+|
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g---------------------------------------------- 118 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENI-NITWSPDG---------------------------------------------- 118 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcce-EEEEcCCC----------------------------------------------
Confidence 9999999999999999988766666 47899998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
++++++..|..|.+.|..+.+.. .-....-.+.-++|+.++.+++.-...|+|.|.....-+.++.+.
T Consensus 119 ----~~~~~~~kdD~it~id~r~~~~~----~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~---- 186 (313)
T KOG1407|consen 119 ----EYIAVGNKDDRITFIDARTYKIV----NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK---- 186 (313)
T ss_pred ----CEEEEecCcccEEEEEeccccee----ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc----
Confidence 59999999999999999854432 222334568889999888888777778999999999999999998
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.|.....++.|+|+| +|++|+.|..+.+||++.--+++.+.-+.-+|..+.||.||++|++|+.|..|-|=++.+
T Consensus 187 ----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 187 ----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred ----cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEeccc
Confidence 689999999999999 799999999999999999889999999999999999999999999999999999888888
Q ss_pred ccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 326 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
+. .+.. -.+.++...++|.
T Consensus 263 Gd-----------------~~~e-I~~~~~t~tVAWH 281 (313)
T KOG1407|consen 263 GD-----------------RVWE-IPCEGPTFTVAWH 281 (313)
T ss_pred CC-----------------eEEE-eeccCCceeEEec
Confidence 87 2222 2356667888886
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-25 Score=205.30 Aligned_cols=268 Identities=15% Similarity=0.154 Sum_probs=221.8
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
+.+.-..+.|++|.|+++|.+|++++.|.+++|||..+++ +..++..+ +-.|..++|...... ++.++.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~----~~~ti~sk-kyG~~~~~Fth~~~~------~i~sSt 76 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK----QVKTINSK-KYGVDLACFTHHSNT------VIHSST 76 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc----eeeEeecc-cccccEEEEecCCce------EEEccC
Confidence 3444567899999999999999999999999999999998 57777765 678999999887765 666665
Q ss_pred --CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 87 --DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 87 --d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
|.+|+.-++.+.+.++.+.+|...|..++.+|-+
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-------------------------------------------- 112 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-------------------------------------------- 112 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC--------------------------------------------
Confidence 8899999999999999999999999999999988
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC--ceEEEEE
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEIYRIT 242 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g--~~~~~~~ 242 (817)
..+++++.|++|++||++..+...... + ..-..+||.|+|-++|++.....|++||++.- .....+.
T Consensus 113 ------d~FlS~S~D~tvrLWDlR~~~cqg~l~-~----~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~ 181 (311)
T KOG1446|consen 113 ------DTFLSSSLDKTVRLWDLRVKKCQGLLN-L----SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS 181 (311)
T ss_pred ------CeEEecccCCeEEeeEecCCCCceEEe-c----CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc
Confidence 489999999999999998555542221 1 12235889999999999988889999999853 2333443
Q ss_pred eecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCe---eEEEEecCCCEEEEEccCCcE
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV---NALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~s~~~~~l~~~~~dg~i 318 (817)
.. .........+.|+||| .++.+...+.+.+.|.-+|..+.++..+...- ...+|+||++++++|+.||+|
T Consensus 182 i~-----~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 182 IT-----DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred cC-----CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 21 1456778899999999 68888888999999999999999998776543 678899999999999999999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEeecccc-CCCccceeEee
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVA 362 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~ 362 (817)
.+|+++++. .+..+++ +..++.++.|.
T Consensus 257 ~vw~~~tg~-----------------~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 257 HVWNLETGK-----------------KVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred EEEEcCCCc-----------------EeeEecCCCCCCccccccC
Confidence 999999887 5666666 78888898886
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-27 Score=238.82 Aligned_cols=243 Identities=22% Similarity=0.323 Sum_probs=214.1
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
+.+...|+++.++++|.+||+|..+|.|.|||....+ ....+.++|...|.+++|... .+.+|+.|+.
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k----~~~~~~~~h~~rvg~laW~~~--------~lssGsr~~~ 281 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK----KTRTLRGSHASRVGSLAWNSS--------VLSSGSRDGK 281 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc----ccccccCCcCceeEEEeccCc--------eEEEecCCCc
Confidence 3347899999999999999999999999999998876 467777856999999999932 2889999999
Q ss_pred EEEEECCCCeEEEE-EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 90 VSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 90 i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
|..+|+...+.... +.+|...|..+.|++|+
T Consensus 282 I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~------------------------------------------------ 313 (484)
T KOG0305|consen 282 ILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG------------------------------------------------ 313 (484)
T ss_pred EEEEEEecchhhhhhhhcccceeeeeEECCCC------------------------------------------------
Confidence 99999998776655 88999999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEee--CCCcEEEEECCCCceEEEEEeec
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGS--SDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~--~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
.++|+|+.|+.+.|||......+ ..+..|.+.|.+++|+|- ...||+|+ .|++|++||..+|..+..+.
T Consensus 314 --~~lASGgnDN~~~Iwd~~~~~p~---~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--- 385 (484)
T KOG0305|consen 314 --NQLASGGNDNVVFIWDGLSPEPK---FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--- 385 (484)
T ss_pred --CeeccCCCccceEeccCCCcccc---EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---
Confidence 59999999999999999644444 788899999999999994 45778764 59999999999999998885
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEE--EcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVS--ADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
....|..+.|++.. .|++ |..+..|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|+
T Consensus 386 ------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 386 ------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 67889999999988 4544 45677899999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 003467 323 ASCE 326 (817)
Q Consensus 323 ~~~~ 326 (817)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8663
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=223.69 Aligned_cols=282 Identities=18% Similarity=0.238 Sum_probs=227.3
Q ss_pred eccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 9 IDWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
++||...|.|||=+|.. ..+|+|+.||.|+|||+.... |..++..| .+-|.+|++.. .. ++++|.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~----~~~~f~AH-~G~V~Gi~v~~--~~------~~tvgdD 128 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE----CIRTFKAH-EGLVRGICVTQ--TS------FFTVGDD 128 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----hhheeecc-cCceeeEEecc--cc------eEEecCC
Confidence 48999999999999988 889999999999999999887 67888888 89999999988 33 8999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
.+|+.|-++. .++.++.+. ..+..+.-+..+
T Consensus 129 KtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~~----------------------------------------------- 159 (433)
T KOG0268|consen 129 KTVKQWKIDG-PPLHTILGK-SVYLGIDHHRKN----------------------------------------------- 159 (433)
T ss_pred cceeeeeccC-Ccceeeecc-cccccccccccc-----------------------------------------------
Confidence 9999999876 355555432 223333333222
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
..+|++++ .|.|||......+ ..+.--...|.++.|+|-.. .|++|++|+.|.+||++++..+.++..
T Consensus 160 ---~~FaTcGe--~i~IWD~~R~~Pv---~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--- 228 (433)
T KOG0268|consen 160 ---SVFATCGE--QIDIWDEQRDNPV---SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--- 228 (433)
T ss_pred ---ccccccCc--eeeecccccCCcc---ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---
Confidence 36777776 5899999755454 56666677899999999765 556666999999999999999988873
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
...-+.++|+|++ .++++++|..+..+|.+. .+++..+.+|...|..+.|||.|+-+++|+.|.+|+||..+
T Consensus 229 ------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 229 ------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3455789999977 799999999999999986 45678889999999999999999999999999999999998
Q ss_pred cccCCCCCCCCCccccceEEEeeccccC---CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAH---THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
.+.. .--.| -..|.++.++ .|.+ ++
T Consensus 303 ~~~S-------------------RdiYhtkRMq~V~~Vk~S---------~Dsk------------------------yi 330 (433)
T KOG0268|consen 303 HGHS-------------------RDIYHTKRMQHVFCVKYS---------MDSK------------------------YI 330 (433)
T ss_pred CCcc-------------------hhhhhHhhhheeeEEEEe---------cccc------------------------EE
Confidence 7652 01112 2347888887 6766 99
Q ss_pred EEecCCCeEEEEeCCccccc
Q 003467 402 ISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~ 421 (817)
+||+.|+.|++|......++
T Consensus 331 ~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EecCCCcceeeeecchhhhc
Confidence 99999999999998765443
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.8e-28 Score=227.11 Aligned_cols=281 Identities=18% Similarity=0.222 Sum_probs=237.4
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
++.|.+.+..+.|-++...||+|+.|..|.+|++..++ .....++.|. .+.|+++.|.++++. +++++.|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs-~g~it~~d~d~~~~~------~iAas~d~ 241 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGS-LGNITSIDFDSDNKH------VIAASNDK 241 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhcc-CCCcceeeecCCCce------EEeecCCC
Confidence 47899999999999999999999999999999998766 2345677776 789999999999988 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.+++|++..++...++.+|...|.++.|....
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~------------------------------------------------ 273 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH------------------------------------------------ 273 (459)
T ss_pred ceeeeeccchhhhhhhcccccceeeehhhccc------------------------------------------------
Confidence 99999999999999999999999999998776
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
..+++|+.|.+|++||+....... ..+. ...+..|+.+ ...+++|-.|++||.||.+++.....+.
T Consensus 274 --~~vVsgs~DRtiK~WDl~k~~C~k--t~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------ 339 (459)
T KOG0288|consen 274 --SRVVSGSADRTIKLWDLQKAYCSK--TVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP------ 339 (459)
T ss_pred --cceeeccccchhhhhhhhhhheec--cccc--cccccceEec--ceeeeecccccceEEEeccCCceeeEee------
Confidence 259999999999999998544431 2222 2344555554 5678899999999999999999999887
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecC----ccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH----KGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
..+.|.++..++++ .+++++.|.++.+.|+++....+.+... ..+.+.+.|||++.|+++|+.||.|++|++
T Consensus 340 ---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 340 ---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred ---cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 33489999999999 6888899999999999998888777542 346889999999999999999999999999
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCC--ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
.+++ +...+...+. .|.+++|+ |.|+ .|
T Consensus 417 ~tgK-----------------lE~~l~~s~s~~aI~s~~W~---------~sG~------------------------~L 446 (459)
T KOG0288|consen 417 FTGK-----------------LEKVLSLSTSNAAITSLSWN---------PSGS------------------------GL 446 (459)
T ss_pred cCce-----------------EEEEeccCCCCcceEEEEEc---------CCCc------------------------hh
Confidence 9988 4444444333 59999998 6665 89
Q ss_pred EEecCCCeEEEE
Q 003467 402 ISAGDDTKLFAY 413 (817)
Q Consensus 402 ~s~~~dg~i~~~ 413 (817)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999998
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-26 Score=220.72 Aligned_cols=274 Identities=22% Similarity=0.258 Sum_probs=227.5
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCC-cEEEE-----------EE--cCCCCCcEEEEEEeec
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSG-WHCQL-----------TV--HGDPKSRISSLVWCHA 71 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~-----------~~--~g~~~~~V~~l~~s~~ 71 (817)
.+.+..|.-+|+|++++||.+++.+++.+|+|.=|++.+++.. +.... .. .+| ...|.+++.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h-~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH-VKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccc-cceeEEEEEcCC
Confidence 3556789999999999999999999999999999999988742 11111 11 134 678999999999
Q ss_pred CCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 72 GKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 72 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
|+| |++++.|..|.||+.++++.++.+.+|.+.|.+++|-...
T Consensus 214 gky------latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt------------------------------- 256 (479)
T KOG0299|consen 214 GKY------LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT------------------------------- 256 (479)
T ss_pred CcE------EEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-------------------------------
Confidence 999 9999999999999999999999999999999999997655
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEE
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 231 (817)
..|.+++.|+.|++|+++ .+.+..++.+|++.|.++.-..-++.+-+|+.|+++++|+
T Consensus 257 -------------------~~lys~s~Drsvkvw~~~---~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwK 314 (479)
T KOG0299|consen 257 -------------------SELYSASADRSVKVWSID---QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWK 314 (479)
T ss_pred -------------------cceeeeecCCceEEEehh---HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEe
Confidence 389999999999999997 3444489999999999999988888888888999999999
Q ss_pred CCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec-C-----------ccCeeE
Q 003467 232 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-H-----------KGDVNA 299 (817)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h-----------~~~v~~ 299 (817)
+.....+ .+. ++...+-|++|..+..+++|+.+|.|.+|++...+++.+.+. | ...|++
T Consensus 315 i~eesql-ifr--------g~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 315 IPEESQL-IFR--------GGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred cccccee-eee--------CCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 9543333 222 688899999999999999999999999999998888766532 2 227899
Q ss_pred EEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 300 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 300 l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
++..|..+.+++|+.+|.|++|.+..+.. +..++..+. -.+-|++|+|+
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r-------------~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------AINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCcc-------------ccceeeecc-cccEEEEEEEc
Confidence 99999999999999999999999988742 122444444 56678999987
No 99
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=2.3e-25 Score=219.72 Aligned_cols=526 Identities=14% Similarity=0.179 Sum_probs=297.0
Q ss_pred EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEE------EEEeecCceEEEEeeecCCCccce
Q 003467 52 QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQK------IVLQSIDFSIWQMAVAPSNSSLMH 125 (817)
Q Consensus 52 ~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~~~~~~~i~~~~~s~~~~~~~~ 125 (817)
...+.+| ...|+.+.|+|-.+. .||+++.|..|++|.+..|-.. ..+.+..-.+.++.|+|..+.
T Consensus 72 i~~l~~H-~d~VtDl~FspF~D~-----LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--- 142 (1012)
T KOG1445|consen 72 IGILAAH-GDQVTDLGFSPFADE-----LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--- 142 (1012)
T ss_pred cceeecc-cceeeccCccccchh-----hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc---
Confidence 3445555 899999999997653 4999999999999999854321 223334467889999997742
Q ss_pred eeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce
Q 003467 126 AVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR 205 (817)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 205 (817)
.|+++ ..|+++|||+.+++.+ ..+.+|...
T Consensus 143 ----------------------------------------------il~s~-a~g~v~i~D~stqk~~---~el~~h~d~ 172 (1012)
T KOG1445|consen 143 ----------------------------------------------ILASG-AHGSVYITDISTQKTA---VELSGHTDK 172 (1012)
T ss_pred ----------------------------------------------eEEec-cCceEEEEEcccCcee---ecccCCchh
Confidence 45554 4599999999988877 889999999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCce-eEEEeEEecCC-eEEEEcCC----CcEEE
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPEL-CIWSLLSLRCG-TLVSADST----GSVQF 278 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~-~l~s~~~d----g~i~i 278 (817)
|.+..|+.||.+|++.+.|..|+|||.+. ++.++... +|.+ .-..+.|..+- +|++.+.+ ..|++
T Consensus 173 vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te--------~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~ 244 (1012)
T KOG1445|consen 173 VQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTE--------GHGGMRDSRVLWAGNWERLISTGFTTKRIREVRA 244 (1012)
T ss_pred hhccccccCCceEeeecCCcceEEeCCccCCCcccccc--------ccccchhheeeeccchhhhhhcccchhhheeeee
Confidence 99999999999999999999999999875 45555553 2332 23345666554 67766654 45899
Q ss_pred EeCCC-CeEEEEeec-CccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCC-------------------
Q 003467 279 WDSRH-GTLLQAHSF-HKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSS------------------- 336 (817)
Q Consensus 279 wd~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~------------------- 336 (817)
||.+. +..+.++.. ....|+---|.||.+.|+-+|. +.++..+.+...+.........
T Consensus 245 ~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~V 324 (1012)
T KOG1445|consen 245 YDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHV 324 (1012)
T ss_pred eeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhh
Confidence 99886 445555543 2345666778999998887655 7788888776544210000000
Q ss_pred --------------------------------------------ccccceEEEeeccccCCCccceeEeec---------
Q 003467 337 --------------------------------------------SEVIKKWIYVGSVRAHTHDVRALTVAV--------- 363 (817)
Q Consensus 337 --------------------------------------------~~~~~~~~~~~~~~~h~~~v~~l~~~~--------- 363 (817)
.-....|- .+....|..+.+.+
T Consensus 325 M~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWl-----nG~Nq~vqKvSl~Pa~r~h~~~p 399 (1012)
T KOG1445|consen 325 MDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWL-----NGTNQVVQKVSLAPAQRSHSPPP 399 (1012)
T ss_pred cchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCcccee-----cCccccccccccCchhccCCCCC
Confidence 00000010 00011111111111
Q ss_pred ---------------------ccCC---------CCCCCcccc-ccccCCCCCccccccccccCCC------cEEEEecC
Q 003467 364 ---------------------PISR---------EDPLPEDKV-KRSRGREKPIDFSYHKWAHLGV------PMLISAGD 406 (817)
Q Consensus 364 ---------------------~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~l~s~~~ 406 (817)
+... ....||-.. ..+...+....+.|..+....+ +.=.+-+.
T Consensus 400 p~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~ 479 (1012)
T KOG1445|consen 400 PEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGN 479 (1012)
T ss_pred CCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCC
Confidence 0000 000122100 0011111122333333332211 00000010
Q ss_pred CCeEEEEeCCcccccCCcc-----------------cCCCCCCCc------eeeecceeecCCeEEEEEeCCeEEEEEec
Q 003467 407 DTKLFAYCANEFTKFSPHE-----------------ICPAPQRVP------IHLVHNTIFSHTSLLLVQYSCRLDILSVR 463 (817)
Q Consensus 407 dg~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~~i~i~~~~ 463 (817)
...+...........++.. ....|.++. .+....+-.++.-+-..+--+.+.-++--
T Consensus 480 sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~ 559 (1012)
T KOG1445|consen 480 SSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHV 559 (1012)
T ss_pred CCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeec
Confidence 0001000000000000000 000111100 00001111111111110100111111111
Q ss_pred ccCCcccCCCCCCCCc--cceeeeeeecCCCCeEEEEecCCCcEEEE---EcCCceEEEEeecCCCCCceEEEeeecCCc
Q 003467 464 LENNVESRSSSGGHAS--TSLLVQVKSKASRKIICSTISNSGMLFAY---SDHVKPSLFELKKGKVGQGEWIINKRQLPR 538 (817)
Q Consensus 464 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~i~~~~~s~~g~~la~---~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.+ ..||+. ..-+..+... -.-.|-.|..+..++|+ +..|.|-||++.... + +....+++
T Consensus 560 ~G--------t~ghks~hi~NLrnln~~--~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PG---r---LPDgv~p~ 623 (1012)
T KOG1445|consen 560 DG--------TQGHKSAHISNLRNLNTR--LPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPG---R---LPDGVMPG 623 (1012)
T ss_pred cC--------ccccchhhhhhhhccccc--CCCccCceeeccceEEEEecCCCceEEEEEcCCCC---C---CCcccccc
Confidence 11 112211 0111111111 11112234556677777 467999999998621 2 11133333
Q ss_pred cc--cceeEEEEec-CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEcc-CCCEEEEEeCC
Q 003467 539 KL--QFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCF 614 (817)
Q Consensus 539 ~~--~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~~d 614 (817)
.. ..|+.+.|.| |..+||+++.||.|++|.+..+.+..... ..+..+..|...|+++.|+| -...||+++.|
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~----tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM----TPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC----CcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 22 3688999999 88999999999999999997553322111 11223344999999999999 45599999999
Q ss_pred CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 615 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 615 g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
.+|++||+.+++....+. .|.+.|..++||| ||+.+|+.+.||+|+||+-.+++.
T Consensus 700 ~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLV-GHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred ceeeeeehhhhhhhheec-cCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCC
Confidence 999999999999887774 4678999999999 999999999999999999887753
No 100
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=224.28 Aligned_cols=285 Identities=18% Similarity=0.210 Sum_probs=232.7
Q ss_pred ccceEEEEEEccCCCE-EEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEE
Q 003467 202 VSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 279 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iw 279 (817)
..+.|.+++|+|...+ +|+.++ -.+.+|+..+-.....+. .....|+++.|-.|| .+++|+..|.|+++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vf 95 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVF 95 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence 3468999999996543 333333 389999988776666665 577889999999999 68889999999999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
|.++...+..+.+|+.+|....|+|+++ .+++|+.|+.+++||+.+.. ....+.+|+.-|++
T Consensus 96 D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------------v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 96 DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------------VQAELSGHTDYVRC 158 (487)
T ss_pred ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------EEEEecCCcceeEe
Confidence 9887777889999999999999999765 45567788889999998876 56688999999999
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeee
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 438 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (817)
.++. |.. ..+++|||.||.|++||++...
T Consensus 159 g~~~---------~~~-----------------------~hivvtGsYDg~vrl~DtR~~~------------------- 187 (487)
T KOG0310|consen 159 GDIS---------PAN-----------------------DHIVVTGSYDGKVRLWDTRSLT------------------- 187 (487)
T ss_pred eccc---------cCC-----------------------CeEEEecCCCceEEEEEeccCC-------------------
Confidence 9997 322 1389999999999999997532
Q ss_pred cceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEE
Q 003467 439 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 518 (817)
Q Consensus 439 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~ 518 (817)
-......+..+|..+.+-|.|..+|++..+.+++|+
T Consensus 188 --------------------------------------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 188 --------------------------------------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred --------------------------------------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 011223344778889999999999999999999999
Q ss_pred eecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeE
Q 003467 519 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 598 (817)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 598 (817)
+.. +.+.. ..+..|...|+|+++..++.+|++++-|+.|++||+.+.+.++.+. ..++|.+
T Consensus 224 l~~---G~qll----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLs 284 (487)
T KOG0310|consen 224 LTT---GGQLL----TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLS 284 (487)
T ss_pred ecC---Cceeh----hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceee
Confidence 986 33321 2344588899999999999999999999999999999999999999 5899999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCcc
Q 003467 599 MFTSSDGQWLAAVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 599 l~~s~dg~~la~~~~dg~i~vwd~~~~~ 626 (817)
++.|||++.++.|-.+|.+.+-+....+
T Consensus 285 iavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999999999988777554443
No 101
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.7e-27 Score=206.19 Aligned_cols=247 Identities=23% Similarity=0.364 Sum_probs=207.7
Q ss_pred eeeccCCCceEEEEECCC-CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 7 SSIDWKPSPVVALATSAD-DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 7 r~~~~h~~~I~~la~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+.+++ .+.+..+++|++ ...+++++.||+++|||...... .+..++.| +..|.++.|++..+. .+++++
T Consensus 55 ~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH-~~EV~Svdwn~~~r~-----~~ltsS 124 (311)
T KOG0277|consen 55 QSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEH-KREVYSVDWNTVRRR-----IFLTSS 124 (311)
T ss_pred Eeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhh-hhheEEeccccccce-----eEEeec
Confidence 33433 356889999986 46788889999999999654432 46667777 899999999987654 377779
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
-|++|++|+...++.++++.+|...|...+|+|...
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-------------------------------------------- 160 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-------------------------------------------- 160 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCC--------------------------------------------
Confidence 999999999999999999999999999999999874
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCc-eEEEEEe
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY-EIYRITV 243 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~-~~~~~~~ 243 (817)
+++++++.|+.+++||++..+.. ..+..|...|+|+.|+. +...|+||+.|+.|+.||+++-+ .+..+.
T Consensus 161 -----nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~- 231 (311)
T KOG0277|consen 161 -----NLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN- 231 (311)
T ss_pred -----CeEEEccCCceEEEEEecCCCce---eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec-
Confidence 38999999999999999865554 45888999999999987 45688999999999999998755 344443
Q ss_pred ecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVI 319 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~ 319 (817)
+|...|..+.|+|.. .|++++.|-+++|||... ..++.+...|+.-+..+.|++ ++.++++++.|+.+.
T Consensus 232 -------gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 232 -------GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred -------CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 799999999999987 799999999999999984 445677788999999999987 567899999999999
Q ss_pred EEEe
Q 003467 320 LYKA 323 (817)
Q Consensus 320 iw~~ 323 (817)
+|+.
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9984
No 102
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=9.8e-26 Score=237.10 Aligned_cols=251 Identities=16% Similarity=0.169 Sum_probs=189.7
Q ss_pred CCCeEEE------EecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec-CCCCCCCceEEEeeCCCeEEEEECC
Q 003467 24 DDSQVAA------AREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA-GKMGLPGGRLFSSSIDGSVSEWDLY 96 (817)
Q Consensus 24 dg~~la~------~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~-~~~~~~~~~l~s~~~d~~i~vwd~~ 96 (817)
+++++|. |+.++.|.+|+..... ....+.+| .+.|.+++|+|+ +.+ |++++.|++|++||+.
T Consensus 37 n~~~~A~~w~~~gGG~~gvI~L~~~~r~~----~v~~L~gH-~~~V~~lafsP~~~~l------LASgS~DgtIrIWDi~ 105 (568)
T PTZ00420 37 SSGFVAVPWEVEGGGLIGAIRLENQMRKP----PVIKLKGH-TSSILDLQFNPCFSEI------LASGSEDLTIRVWEIP 105 (568)
T ss_pred CCCeEEEEEEcCCCCceeEEEeeecCCCc----eEEEEcCC-CCCEEEEEEcCCCCCE------EEEEeCCCeEEEEECC
Confidence 4556665 4567889999987643 46678887 789999999997 555 9999999999999997
Q ss_pred CCe--------EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 97 DLK--------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 97 ~~~--------~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
++. ++..+.+|...|.+++|+|++..
T Consensus 106 t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~---------------------------------------------- 139 (568)
T PTZ00420 106 HNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY---------------------------------------------- 139 (568)
T ss_pred CCCccccccccceEEeecCCCcEEEEEECCCCCe----------------------------------------------
Confidence 642 34567889999999999998732
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+++++.|+.|+|||+.++... ..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.
T Consensus 140 ---iLaSgS~DgtIrIWDl~tg~~~---~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~------ 206 (568)
T PTZ00420 140 ---IMCSSGFDSFVNIWDIENEKRA---FQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH------ 206 (568)
T ss_pred ---EEEEEeCCCeEEEEECCCCcEE---EEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe------
Confidence 5789999999999999876544 3333 55789999999999999999999999999999999888876
Q ss_pred CCCCce-----eEEEeEEecCC-eEEEEcCCC----cEEEEeCCC-CeEEEEeecC--ccCeeEEEEecCCCEEEEEccC
Q 003467 249 GSGPEL-----CIWSLLSLRCG-TLVSADSTG----SVQFWDSRH-GTLLQAHSFH--KGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 249 ~~~~~~-----~v~~v~~~~~~-~l~s~~~dg----~i~iwd~~~-~~~~~~~~~h--~~~v~~l~~s~~~~~l~~~~~d 315 (817)
+|.. .++...|++++ .|++++.++ .|+|||++. ++++..+..+ .+.+......+++.++++|+.|
T Consensus 207 --gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 --IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred --cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 4443 34444566776 678877664 799999995 5566555432 2333333344568888899999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
+.|++|++..+.. ..+.. ..+..++++++|.
T Consensus 285 ~tIr~~e~~~~~~---------------~~l~~-~~s~~p~~g~~f~ 315 (568)
T PTZ00420 285 GNCRYYQHSLGSI---------------RKVNE-YKSCSPFRSFGFL 315 (568)
T ss_pred CeEEEEEccCCcE---------------Eeecc-cccCCCccceEEc
Confidence 9999999976531 02222 2256778888886
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=209.65 Aligned_cols=295 Identities=16% Similarity=0.211 Sum_probs=241.4
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+|-+.+|...|..++.-.-...+++++.|.+.+||.++++. |..++.|| .++|.+++|++.+.+ +++++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~----CL~~Y~GH-~GSVNsikfh~s~~L------~lTaS 209 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA----CLATYTGH-TGSVNSIKFHNSGLL------LLTAS 209 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeecccc----ceeeeccc-ccceeeEEeccccce------EEEcc
Confidence 46678999999999998888899999999999999999998 89999999 899999999999988 99999
Q ss_pred CCCeEEEEEC----CCCe------------------------------------EEEEEeecCceEEEEeeecCCCccce
Q 003467 86 IDGSVSEWDL----YDLK------------------------------------QKIVLQSIDFSIWQMAVAPSNSSLMH 125 (817)
Q Consensus 86 ~d~~i~vwd~----~~~~------------------------------------~~~~~~~~~~~i~~~~~s~~~~~~~~ 125 (817)
.|++..||.. +..+ ++..+.+|.+.|.+..|-
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-------- 281 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-------- 281 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh--------
Confidence 9999999972 1111 112233333333333333
Q ss_pred eeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce
Q 003467 126 AVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR 205 (817)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 205 (817)
..++.+++++-|.+..+||+++++.+ ..+.+|...
T Consensus 282 ------------------------------------------~gg~Q~vTaSWDRTAnlwDVEtge~v---~~LtGHd~E 316 (481)
T KOG0300|consen 282 ------------------------------------------AGGQQMVTASWDRTANLWDVETGEVV---NILTGHDSE 316 (481)
T ss_pred ------------------------------------------cCcceeeeeeccccceeeeeccCcee---ccccCcchh
Confidence 34479999999999999999988877 899999999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCC-ceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCC
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (817)
.+.++-+|..+++++.+.|.+.++||.+.. ..+..+. +|...|.++.|..|..+++|+.|.+|++||+++.
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchhhcceeeeec--------ccccceeEEEEecCCceeecCCCceEEEeeeccc
Confidence 999999999999999999999999999732 2233344 7999999999999999999999999999999974
Q ss_pred -eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeec
Q 003467 285 -TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 363 (817)
Q Consensus 285 -~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 363 (817)
.++.++.. ..++..++++..+..|+.--.+..|++||++..+.... +-...++|..-|.|.+|.
T Consensus 389 RsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-------------PrtsRqgHrRMV~c~AW~- 453 (481)
T KOG0300|consen 389 RSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-------------PRTSRQGHRRMVTCCAWL- 453 (481)
T ss_pred cCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccC-------------Ccccccccceeeeeeecc-
Confidence 45677764 67899999998888888888889999999998774322 123668899999999995
Q ss_pred ccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 364 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+. -...|+++|.|..+.-|.++.
T Consensus 454 --------eeh----------------------p~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 454 --------EEH----------------------PACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred --------ccC----------------------cccccccccccceeeeeEecc
Confidence 221 113799999999999999875
No 104
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.1e-26 Score=240.44 Aligned_cols=232 Identities=14% Similarity=0.185 Sum_probs=186.9
Q ss_pred eeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCC---CcEEEEEEcCCCCCcEEEEEEeecC-CCCCCCceEE
Q 003467 8 SIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTS---GWHCQLTVHGDPKSRISSLVWCHAG-KMGLPGGRLF 82 (817)
Q Consensus 8 ~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~g~~~~~V~~l~~s~~~-~~~~~~~~l~ 82 (817)
.+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++.. .......+.+| ...|.+++|+|++ .+ |+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~i------La 142 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNV------LA 142 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCE------EE
Confidence 4679999999999999 899999999999999999976531 11235677787 7899999999986 45 99
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+++.|++|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG------------------------------------------ 180 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG------------------------------------------ 180 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC------------------------------------------
Confidence 99999999999999999999999999999999999998
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce-EEEEEEccCCCEEEEee----CCCcEEEEECCCCce
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR-VLSVTWSADGNMLYSGS----SDGYIRSWDAKLGYE 237 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~v~~s~dg~~l~s~~----~dg~i~vwd~~~g~~ 237 (817)
.+|++++.|+.|+|||+.++..+ ..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++...
T Consensus 181 --------~lLatgs~Dg~IrIwD~rsg~~v---~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 181 --------SLLCTTSKDKKLNIIDPRDGTIV---SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred --------CEEEEecCCCEEEEEECCCCcEE---EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 48999999999999999877654 567778764 45778999988888764 478999999987653
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-CCCcEEEEeCCCCeEEEEeec-CccCeeEEEEecC
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPS 305 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~ 305 (817)
...... ......+....|++++ .+++++ .|+.|++||+.+++.+..... +...+..++|.|.
T Consensus 250 p~~~~~------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVD------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ceeEec------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 332221 0234556677888888 566665 599999999999888766544 3456788888885
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.8e-26 Score=216.44 Aligned_cols=286 Identities=21% Similarity=0.249 Sum_probs=228.3
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee------cC---CCC-CCCceeEEEeEEecCC-
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG------LG---GLG-SGPELCIWSLLSLRCG- 265 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~------~~---~~~-~~~~~~v~~v~~~~~~- 265 (817)
+.+..|.-.|.+|+++||++++++++.+|+|.-|++.+|+....+... .+ ... ..|...+.+++.++||
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 667789999999999999999999999999999999999865222111 00 112 3788899999999999
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEE
Q 003467 266 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
+|++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....+++++.|+.|++|+++... +
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-----------------~ 278 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-----------------Y 278 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-----------------H
Confidence 79999999999999999999999999999999999999888899999999999999999877 7
Q ss_pred eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcc
Q 003467 346 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 425 (817)
Q Consensus 346 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~ 425 (817)
+.++.+|+..|.++... .-++ .+-.|+.|.++++|++....
T Consensus 279 vetlyGHqd~v~~IdaL---------~reR------------------------~vtVGgrDrT~rlwKi~ees------ 319 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL---------SRER------------------------CVTVGGRDRTVRLWKIPEES------ 319 (479)
T ss_pred HHHHhCCccceeeechh---------cccc------------------------eEEeccccceeEEEeccccc------
Confidence 88999999999998764 3332 56667799999999985422
Q ss_pred cCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcE
Q 003467 426 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML 505 (817)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 505 (817)
++ +..++...+-|++|-.+..+
T Consensus 320 ----------------------ql------------------------------------ifrg~~~sidcv~~In~~Hf 341 (479)
T KOG0299|consen 320 ----------------------QL------------------------------------IFRGGEGSIDCVAFINDEHF 341 (479)
T ss_pred ----------------------ee------------------------------------eeeCCCCCeeeEEEecccce
Confidence 11 11122367888998888777
Q ss_pred EEEEcCCceEEEEeecCCCCCceEEE--eeecCCcc-----ccceeEEEEecCCCEEEEEecCCcEEEEEccCC----ce
Q 003467 506 FAYSDHVKPSLFELKKGKVGQGEWII--NKRQLPRK-----LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS----EL 574 (817)
Q Consensus 506 la~~~~~~i~l~~~~~~~~~~~~~~~--~~~~~~~~-----~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~----~~ 574 (817)
+.-+++|.|.||.+.. ...++.. .....+.+ ...|++++..|...++|+|+.+|.|++|-++++ ++
T Consensus 342 vsGSdnG~IaLWs~~K---Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLK---KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred eeccCCceEEEeeecc---cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 7778899999999986 2222221 11111211 127999999999999999999999999999877 34
Q ss_pred eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 575 LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
+..+. ..+.|++++|+++|++|++|
T Consensus 419 l~~ls------------~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 419 LYSLS------------LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeecc------------cccEEEEEEEccCCCEEEEe
Confidence 44444 47899999999999977776
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.7e-26 Score=227.78 Aligned_cols=283 Identities=22% Similarity=0.365 Sum_probs=233.2
Q ss_pred cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEE--EEEeecCceEEE-EeeecCCCccce
Q 003467 49 WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQK--IVLQSIDFSIWQ-MAVAPSNSSLMH 125 (817)
Q Consensus 49 ~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~i~~-~~~s~~~~~~~~ 125 (817)
+.+...+.|| ...|..+++.+.. . ++++|.||++++|+-...+.+ ..+.+|.+-|.. ++|.+...
T Consensus 4 Y~ls~~l~gH-~~DVr~v~~~~~~-~------i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~---- 71 (745)
T KOG0301|consen 4 YKLSHELEGH-KSDVRAVAVTDGV-C------IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK---- 71 (745)
T ss_pred ceeEEEeccC-ccchheeEecCCe-E------EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC----
Confidence 3467788888 7889999987765 3 899999999999997655544 345667777766 77766221
Q ss_pred eeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce
Q 003467 126 AVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR 205 (817)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 205 (817)
.++++|+.|.+|.+|...+...+ ..|.+|+..
T Consensus 72 ---------------------------------------------~~l~~g~~D~~i~v~~~~~~~P~---~~LkgH~sn 103 (745)
T KOG0301|consen 72 ---------------------------------------------GRLVVGGMDTTIIVFKLSQAEPL---YTLKGHKSN 103 (745)
T ss_pred ---------------------------------------------cceEeecccceEEEEecCCCCch---hhhhccccc
Confidence 37999999999999999877776 899999999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCe
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (817)
|.|++...++. +++||-|.++++|-. +++...+. +|+..||+++..|++.+++|+.|.+|++|.. ++
T Consensus 104 VC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~--------gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 104 VCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ--------GHTASVWAVASLPENTYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred eeeeecCCcCc-eEecccccceEEecc--hhhhcccC--------CcchheeeeeecCCCcEEeccCcceeeeccC--Cc
Confidence 99999888887 999999999999975 56666665 8999999999999999999999999999987 78
Q ss_pred EEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeeccc
Q 003467 286 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 365 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 365 (817)
.+++|.+|+.-|..+++-+++ .+++++.||.|++|++.. . .+....+|+.-|.++...
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e-----------------~l~~~~ghtn~vYsis~~--- 228 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-E-----------------VLLEMHGHTNFVYSISMA--- 228 (745)
T ss_pred hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-c-----------------eeeeeeccceEEEEEEec---
Confidence 899999999999999999875 488999999999999944 3 678899999999999954
Q ss_pred CCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC
Q 003467 366 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 445 (817)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 445 (817)
.++. .++++|+|+++++|+.....
T Consensus 229 ------~~~~------------------------~Ivs~gEDrtlriW~~~e~~-------------------------- 252 (745)
T KOG0301|consen 229 ------LSDG------------------------LIVSTGEDRTLRIWKKDECV-------------------------- 252 (745)
T ss_pred ------CCCC------------------------eEEEecCCceEEEeecCceE--------------------------
Confidence 4443 99999999999999876311
Q ss_pred CeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeec
Q 003467 446 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 521 (817)
Q Consensus 446 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~ 521 (817)
..+..+ ...+.++.+-++|..++.++||.|++|....
T Consensus 253 --------------------------------------q~I~lP-ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 253 --------------------------------------QVITLP-TTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --------------------------------------EEEecC-ccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 111111 1457777788899999999999999998874
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=207.37 Aligned_cols=316 Identities=19% Similarity=0.275 Sum_probs=249.5
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.|+++.-.++++.. +..+.+.+|...||.++.....
T Consensus 125 srivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tq-------------------------------------- 160 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQ-------------------------------------- 160 (481)
T ss_pred chheeeecCCceeE------eehhhhcccccceeeehhhcCC--------------------------------------
Confidence 56788777877432 4567788999999999987665
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC------
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA------ 232 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~------ 232 (817)
+.+.+++.|.+.+||.++++..+ ..+.+|.+.|++++|++.+.++++++.|++-.||..
T Consensus 161 ------------pi~gtASADhTA~iWs~Esg~CL---~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 161 ------------PICGTASADHTARIWSLESGACL---ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ------------cceeecccccceeEEeeccccce---eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 48999999999999999999888 788999999999999999999999999999999962
Q ss_pred CC--------CceE-------------------EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC
Q 003467 233 KL--------GYEI-------------------YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 233 ~~--------g~~~-------------------~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~ 284 (817)
.. ++.. .++..+.- ...+|...|.+..|...| ++++++.|.+..+||+++|
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~-~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM-RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee-eeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 11 0000 01111000 123688889999999888 8999999999999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
..+..+.+|....+.++-+|..+.+++++.|.+.++||+...-. -+..+++|+..|++..|.
T Consensus 305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~----------------sV~VFQGHtdtVTS~vF~-- 366 (481)
T KOG0300|consen 305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ----------------SVAVFQGHTDTVTSVVFN-- 366 (481)
T ss_pred ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc----------------eeeeecccccceeEEEEe--
Confidence 99999999999999999999999999999999999999985432 567889999999999996
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
.+. .+++|+.|.+|++||+.++...
T Consensus 367 -------~dd-------------------------~vVSgSDDrTvKvWdLrNMRsp----------------------- 391 (481)
T KOG0300|consen 367 -------TDD-------------------------RVVSGSDDRTVKVWDLRNMRSP----------------------- 391 (481)
T ss_pred -------cCC-------------------------ceeecCCCceEEEeeeccccCc-----------------------
Confidence 333 7999999999999999875411
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCC
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGK 523 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~ 523 (817)
+..+.. ...+..++++..+..+|.- ++..+++|++.
T Consensus 392 --------------------------------------lATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRlfDln--- 428 (481)
T KOG0300|consen 392 --------------------------------------LATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN--- 428 (481)
T ss_pred --------------------------------------ceeeec--CCccceeEeecCCceEEeccCCceEEEEecC---
Confidence 111111 1556677788888888885 66899999997
Q ss_pred CCCceEEEeeecCCccccceeEEEEecCC--CEEEEEecCCcEEEEEccC
Q 003467 524 VGQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~i~~~~fspd~--~~l~~~~~dg~i~v~d~~~ 571 (817)
+..+-.+++..-.+|...++|.+|..+- .-|++++-|..+.=|.+..
T Consensus 429 -G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 429 -GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 4444334444456777789999997543 3467788899999998864
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=201.75 Aligned_cols=259 Identities=20% Similarity=0.240 Sum_probs=211.6
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee--cCCCCCCCceEEE
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH--AGKMGLPGGRLFS 83 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~--~~~~~~~~~~l~s 83 (817)
++.-+.|...|......--|++||+++.|++|+|+.+.+... ..++.++.|| .++|.-++|.. -|.+ |||
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh-~GPVwqv~wahPk~G~i------LAS 75 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGH-SGPVWKVAWAHPKFGTI------LAS 75 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCC-CCCeeEEeecccccCcE------eeE
Confidence 344567888888887777899999999999999999986542 2467899998 89999999987 5766 999
Q ss_pred eeCCCeEEEEECCCCeE--EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 84 SSIDGSVSEWDLYDLKQ--KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
++.||.|.||.-++|+- ......|...|++++|.|.+..+
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl-------------------------------------- 117 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL-------------------------------------- 117 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccce--------------------------------------
Confidence 99999999999988853 35566899999999999988544
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC---C-----------CEEEEeeCCCcE
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD---G-----------NMLYSGSSDGYI 227 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d---g-----------~~l~s~~~dg~i 227 (817)
.||+++.||.|.|.++.+.+.....+....|.-.|++++|.|. | +.|++|+.|..|
T Consensus 118 ----------~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V 187 (299)
T KOG1332|consen 118 ----------LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV 187 (299)
T ss_pred ----------EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce
Confidence 8999999999999999866455555778899999999999986 4 579999999999
Q ss_pred EEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-----eEEEEcCCCcEEEEeCCCC--eE-EEEeecCccCeeE
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG--TL-LQAHSFHKGDVNA 299 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~s~~~dg~i~iwd~~~~--~~-~~~~~~h~~~v~~ 299 (817)
+||+..+++-+..-.+ .+|...|..++|.|.- +|++++.||++.||..+.. .- ...++.....+..
T Consensus 188 kiW~~~~~~w~~e~~l------~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~ 261 (299)
T KOG1332|consen 188 KIWKFDSDSWKLERTL------EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWR 261 (299)
T ss_pred eeeecCCcchhhhhhh------hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEE
Confidence 9999987743322211 2799999999999864 6999999999999976621 11 1222334567999
Q ss_pred EEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 300 LAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 300 l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+.||..|+.|++++.|+.|.+|.-+..
T Consensus 262 vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 262 VSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEeccccEEEEecCCcEEEEEEeCCC
Confidence 999999999999999999999976543
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=210.68 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=183.8
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
...|.++...|.... +++|+.|.++.++|..+++.+..+.+|.-.|..+.|+|+.
T Consensus 219 ~pgi~ald~~~s~~~------ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~------------------- 273 (506)
T KOG0289|consen 219 TPGITALDIIPSSSK------ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL------------------- 273 (506)
T ss_pred CCCeeEEeecCCCCc------ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch-------------------
Confidence 356888888887555 9999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 219 (817)
..+++++.|-.|+||........ .....|..+|+.+..+|.|+||+
T Consensus 274 -------------------------------~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~~V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 274 -------------------------------DTVITASADEIIRVWSVPLSSEP---TSSRPHEEPVTGLSLHPTGEYLL 319 (506)
T ss_pred -------------------------------hheeecCCcceEEeeccccccCc---cccccccccceeeeeccCCcEEE
Confidence 48999999999999999866554 67789999999999999999999
Q ss_pred EeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCee
Q 003467 220 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 298 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 298 (817)
+++.||+....|+++|..+...... ...-.+.+.+|+||| .|.+|..||.|+|||+.++..+..|.+|.++|.
T Consensus 320 sAs~d~~w~Fsd~~~g~~lt~vs~~------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQLTVVSDE------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EecCCceEEEEEccCCcEEEEEeec------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 9999999999999999999888731 234568999999999 688999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.++|+.+|-+|+++..|+.|++||++...
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 99999999999999999999999997654
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-22 Score=209.34 Aligned_cols=261 Identities=18% Similarity=0.225 Sum_probs=215.1
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
|.-.|...--+|...-+.++|.|+|.+|.+++.||.|++|+....... ..++.-+ ...|.+++-. +.+
T Consensus 1 M~~~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P~ti~~~-g~~v~~ia~~--s~~------ 68 (933)
T KOG1274|consen 1 MSSTRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---PETIDIS-GELVSSIACY--SNH------ 68 (933)
T ss_pred CCcccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---Cchhhcc-CceeEEEeec--ccc------
Confidence 444455544689999999999999999999999999999998765221 1122212 4566666644 334
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|++++.+++|.+|...+++.-..+....-++.+++|+.+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g---------------------------------------- 108 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG---------------------------------------- 108 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCC----------------------------------------
Confidence 9999999999999999988776777777899999999998
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
..+|.|++|-.|++-+..+.... +.+++|+++|.++.|+|.+.+||+.+-||.|++||++++.+...
T Consensus 109 ----------~~iaagsdD~~vK~~~~~D~s~~---~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 109 ----------KMIAAGSDDTAVKLLNLDDSSQE---KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ----------cEEEeecCceeEEEEeccccchh---eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 59999999999999999866655 88999999999999999999999999999999999999988877
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCc
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
+..............+..++|+|+| +++....|+.|++|+...+.....+.. +...+.++.|+|+|+|||+++.||.
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~ 255 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ 255 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc
Confidence 7643222222235677889999996 899999999999999999888777753 4455999999999999999999999
Q ss_pred EEEEEeecc
Q 003467 318 VILYKASCE 326 (817)
Q Consensus 318 i~iw~~~~~ 326 (817)
|.+||..+.
T Consensus 256 I~vWnv~t~ 264 (933)
T KOG1274|consen 256 ILVWNVDTH 264 (933)
T ss_pred EEEEecccc
Confidence 999999863
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=200.93 Aligned_cols=304 Identities=15% Similarity=0.172 Sum_probs=216.5
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEE--EEe--ecCccCeeEEEEecCCCEEEEE-ccCCcEEEEEe
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL--QAH--SFHKGDVNALAAAPSHNRVFST-GSDGQVILYKA 323 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~--~~h~~~v~~l~~s~~~~~l~~~-~~dg~i~iw~~ 323 (817)
++|...|++++|+.|| .|++++.|+.|++|+++..... +.+ ...-+..+.++|+||-+.+++. -...++++|.+
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 3799999999999999 7999999999999999864321 111 1112356889999998766654 44668999988
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.....+.. +-....|.....-+.|+-++..+-+. ..++ ++++
T Consensus 163 ~K~~dG~~-----~~~~v~~D~~~f~~kh~v~~i~iGiA---------~~~k------------------------~ims 204 (420)
T KOG2096|consen 163 VKKTDGSG-----SHHFVHIDNLEFERKHQVDIINIGIA---------GNAK------------------------YIMS 204 (420)
T ss_pred eecccCCC-----CcccccccccccchhcccceEEEeec---------CCce------------------------EEEE
Confidence 76553111 11122233333445555566555553 3343 9999
Q ss_pred ecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCcccee
Q 003467 404 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 483 (817)
Q Consensus 404 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~ 483 (817)
++.|..|.+|++.. +.+.
T Consensus 205 as~dt~i~lw~lkG-q~L~------------------------------------------------------------- 222 (420)
T KOG2096|consen 205 ASLDTKICLWDLKG-QLLQ------------------------------------------------------------- 222 (420)
T ss_pred ecCCCcEEEEecCC-ceee-------------------------------------------------------------
Confidence 99999999999873 2111
Q ss_pred eeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCC
Q 003467 484 VQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 562 (817)
Q Consensus 484 ~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg 562 (817)
.+.. .+......++||+|+++|++ -.-.+++|++-....+.----.+-..+.+|...|..++|||++.++++.+.||
T Consensus 223 -~idt-nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 223 -SIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred -eecc-ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 0000 11334567899999999985 56889999987654443211122367889999999999999999999999999
Q ss_pred cEEEEEcc----CC---ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCC
Q 003467 563 RIYVVDVS----SS---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE 635 (817)
Q Consensus 563 ~i~v~d~~----~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~ 635 (817)
+++|||++ .+ +.+++... .+....+....++.||.|+.||.+.. ..+++|..++++..-.+...|
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~-------pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h 372 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSA-------PLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIH 372 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCc-------chhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhh
Confidence 99999984 12 22332211 01113445568999999999998764 459999999999888888889
Q ss_pred CCCeEEEEecCCCCCeEEEEecCCeEEEEE
Q 003467 636 GASVTAAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 636 ~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
+..|++++|++ +|+++++++ |..++++.
T Consensus 373 ~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 373 STTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 99999999999 999999887 67788875
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=201.24 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=211.7
Q ss_pred CCCceEEEEECC-CCCeEEEEecCCcEEEEecCC-CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 12 KPSPVVALATSA-DDSQVAAAREDGSLEIWLVSP-GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 12 h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
..+.|.+|+||| ...+|+.|+=||+|++|++.. |.. .-+....| .++|.+++|+.||.. +++++.|+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---~~ka~~~~-~~PvL~v~Wsddgsk------Vf~g~~Dk~ 95 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---VPKAQQSH-DGPVLDVCWSDDGSK------VFSGGCDKQ 95 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc---cchhhhcc-CCCeEEEEEccCCce------EEeeccCCc
Confidence 347899999999 555666788899999999986 342 22344444 789999999999988 999999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
+++||+.++ +...+..|.++|..+.|-+...+
T Consensus 96 ~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~----------------------------------------------- 127 (347)
T KOG0647|consen 96 AKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNY----------------------------------------------- 127 (347)
T ss_pred eEEEEccCC-CeeeeeecccceeEEEEecCCCc-----------------------------------------------
Confidence 999999999 57778889999999999987643
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+.|++|+-|.+|+.||.+....+. ++ .-..++.++..- ..+++++..+..|.+|+++++....+...
T Consensus 128 -~cl~TGSWDKTlKfWD~R~~~pv~---t~-~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~------ 194 (347)
T KOG0647|consen 128 -QCLVTGSWDKTLKFWDTRSSNPVA---TL-QLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIE------ 194 (347)
T ss_pred -ceeEecccccceeecccCCCCeee---ee-eccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhc------
Confidence 389999999999999998655542 22 234567776653 45888999999999999987765544332
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC--eEEEEeecCcc---------CeeEEEEecCCCEEEEEccCCc
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLLQAHSFHKG---------DVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
+.....+.+++..+|. ..+.|+-+|.+-+..+..+ +.-.+|+.|.. .|..++|+|....|+++|.||+
T Consensus 195 SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 195 SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 2466778899888887 6799999999999988876 44566677762 4778999999999999999999
Q ss_pred EEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 318 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
+.+||-+... .+.....|..+|.+..|.
T Consensus 275 f~FWDkdar~-----------------kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 275 FSFWDKDART-----------------KLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEEecchhhh-----------------hhhccCcCCCccceeEec
Confidence 9999988776 677778899999999997
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=201.97 Aligned_cols=273 Identities=16% Similarity=0.213 Sum_probs=215.8
Q ss_pred EEEEecCCcEEEEecCCCC------CCcEE--EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe
Q 003467 28 VAAAREDGSLEIWLVSPGT------SGWHC--QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK 99 (817)
Q Consensus 28 la~~~~dg~i~iwd~~~~~------~~~~~--~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 99 (817)
|++|+....|.=+++.... ..|++ ...++.| .++|++||.+ +.+ +||||.|-+|++||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH-~~sitavAVs--~~~------~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAH-AGSITALAVS--GPY------VASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecccccccc-ccceeEEEec--cee------EeccCCCCcEEEEeccchh
Confidence 5666665544444443211 11222 3344555 8999999976 566 9999999999999999999
Q ss_pred EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC
Q 003467 100 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 179 (817)
Q Consensus 100 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 179 (817)
.+..+-.|.+.|+++.|.+.... ..|++|++|
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~------------------------------------------------shLlS~sdD 106 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSK------------------------------------------------SHLLSGSDD 106 (362)
T ss_pred hhcceeccccceEEEEecCCcch------------------------------------------------hheeeecCC
Confidence 99999999999999999987632 289999999
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEe
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 259 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v 259 (817)
|.|.+|+...- .....+++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+.-..+.. .+. ...+
T Consensus 107 G~i~iw~~~~W---~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-------~~~--at~v 174 (362)
T KOG0294|consen 107 GHIIIWRVGSW---ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-------KNK--ATLV 174 (362)
T ss_pred CcEEEEEcCCe---EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-------CCc--ceee
Confidence 99999998633 44599999999999999999999999999999999999999988777764 232 2339
Q ss_pred EEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCcc
Q 003467 260 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 260 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
.|+|.| +++.+..+ .|-+|.+.+......+.. ...+.|+.|. ++..|++|+.|+.|.+||.+...
T Consensus 175 ~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~----------- 240 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT----------- 240 (362)
T ss_pred EEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCc-----------
Confidence 999999 57766665 589999987766655543 3567777776 56789999999999999998866
Q ss_pred ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 339 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+...+.+|...|.++.+.. .|++ .+|++++.||.|++||++..
T Consensus 241 ------~~~~~~AH~~RVK~i~~~~-------~~~~------------------------~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 ------PLTEFLAHENRVKDIASYT-------NPEH------------------------EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ------cceeeecchhheeeeEEEe-------cCCc------------------------eEEEEeccCceEEEEEcccc
Confidence 6788899999999998641 1333 49999999999999999875
Q ss_pred cc
Q 003467 419 TK 420 (817)
Q Consensus 419 ~~ 420 (817)
.+
T Consensus 284 ~k 285 (362)
T KOG0294|consen 284 TK 285 (362)
T ss_pred cc
Confidence 43
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=198.92 Aligned_cols=279 Identities=16% Similarity=0.201 Sum_probs=209.5
Q ss_pred CccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEE
Q 003467 201 RVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQ 277 (817)
Q Consensus 201 ~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~ 277 (817)
.....|.+++||| ...+++.++-||+||+|+++. |..+.+... .+..+|.+++|+.|| .+++|+.|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCceEEeeccCCceE
Confidence 3467899999999 455666889999999999987 455544332 689999999999999 799999999999
Q ss_pred EEeCCCCeEEEEeecCccCeeEEEEecCCC--EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 278 FWDSRHGTLLQAHSFHKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 278 iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
+||+.+++ +..+..|.++|.++.|-+... .|++|+.|.+|+.||.+... .+.++... ..
T Consensus 98 ~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----------------pv~t~~LP-eR 158 (347)
T KOG0647|consen 98 LWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----------------PVATLQLP-ER 158 (347)
T ss_pred EEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----------------eeeeeecc-ce
Confidence 99999995 667788999999999988765 88999999999999998765 33333322 23
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCce
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 435 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (817)
+.++.. ..++++.+..+..|.+|++.+....
T Consensus 159 vYa~Dv-----------------------------------~~pm~vVata~r~i~vynL~n~~te-------------- 189 (347)
T KOG0647|consen 159 VYAADV-----------------------------------LYPMAVVATAERHIAVYNLENPPTE-------------- 189 (347)
T ss_pred eeehhc-----------------------------------cCceeEEEecCCcEEEEEcCCCcch--------------
Confidence 444433 1258888999999999998653311
Q ss_pred eeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCce
Q 003467 436 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKP 514 (817)
Q Consensus 436 ~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i 514 (817)
..++..+....++|++...|..-.|.| -.|.+
T Consensus 190 -----------------------------------------------~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 190 -----------------------------------------------FKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred -----------------------------------------------hhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 111222223568888888888766664 67999
Q ss_pred EEEEeecCCC-CCceEEEeeecC--CccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 515 SLFELKKGKV-GQGEWIINKRQL--PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 515 ~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
.+..++.... ..-.++..+..- ....-.|++++|+|.-..|++++.||++.+||-+....+.+.+.
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~----------- 291 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET----------- 291 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-----------
Confidence 9999886322 112222222111 11133688999999999999999999999999876667777666
Q ss_pred CCCceeEEEEccCCCEEEEEe
Q 003467 592 SEPPITKMFTSSDGQWLAAVN 612 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~ 612 (817)
|..+|++.+|+.+|.++|.+.
T Consensus 292 ~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCccceeEecCCCCEEEEEe
Confidence 899999999999999998774
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=213.92 Aligned_cols=301 Identities=13% Similarity=0.114 Sum_probs=224.1
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
..+.+|+..|.++++.|.|.+|++|+.|.+|++||........+..-. ........|.++.|++.| +|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~---l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ---LQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc---cCcccccccceeeecCCCCeEEEEecCcc
Confidence 567789999999999999999999999999999998743322111111 111466789999999998 7777777778
Q ss_pred EEEEeCCCCeEEEE------------eecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeecccCCCCCCCCCccccce
Q 003467 276 VQFWDSRHGTLLQA------------HSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK 342 (817)
Q Consensus 276 i~iwd~~~~~~~~~------------~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (817)
.+++|-.-.+.+.. -++|.+.++|.+|+|+. ..+++++.||++++|+++.... +
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-------------q 304 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-------------Q 304 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-------------h
Confidence 99999764333322 36799999999999976 4677899999999999987652 1
Q ss_pred EEEeecc--ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccc
Q 003467 343 WIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK 420 (817)
Q Consensus 343 ~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~ 420 (817)
...+... .+..-.+...+|+ +|++ .++.|..||.|.+|+......
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~n---------rdg~------------------------~iAagc~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWN---------RDGK------------------------LIAAGCLDGSIQIWDKGSRTV 351 (641)
T ss_pred eeEEeeccCCCcccCceeeecC---------CCcc------------------------hhhhcccCCceeeeecCCccc
Confidence 2233332 2333456667776 7876 899999999999999754220
Q ss_pred cCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCC--CCeEEEE
Q 003467 421 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS--RKIICST 498 (817)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~i~~~~ 498 (817)
- ....+...|. ..|+|++
T Consensus 352 ~------------------------------------------------------------p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 352 R------------------------------------------------------------PVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred c------------------------------------------------------------cceEeeeccCCCCceeEEE
Confidence 0 1111222222 4799999
Q ss_pred ecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec------CCcEEEEEccC
Q 003467 499 ISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH------DRRIYVVDVSS 571 (817)
Q Consensus 499 ~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~------dg~i~v~d~~~ 571 (817)
||+||++|++ +.|+.+++|+|.+.+.....| ..++... +-+.++||||.+++++|+. .|++++||..+
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~----tgL~t~~-~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR----TGLPTPF-PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhh----cCCCccC-CCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 9999999999 899999999998743332221 1222222 4678899999999999953 46899999999
Q ss_pred CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 572 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
.+.++.+.- ....|..+.|+|-=+.|.+++.||+++||-=
T Consensus 447 ~d~v~ki~i-----------~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 447 LDTVYKIDI-----------STASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred eeeEEEecC-----------CCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 999888886 5788999999999999999999999998843
No 116
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-23 Score=214.55 Aligned_cols=527 Identities=13% Similarity=0.166 Sum_probs=333.3
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY 96 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~ 96 (817)
..-.||+|+++|..... ..|.||...++. |...+.+| ...+..+.+.|.... ..++++++.||+|++||+.
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~----~i~~l~~~-~a~l~s~~~~~~~~~---~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGE----CITSLEDH-TAPLTSVIVLPSSEN---ANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHh----hhhhcccc-cCccceeeecCCCcc---ceEEEEEecCccEEEecCC
Confidence 34568999999988765 679999999998 78888888 899999999887541 1458899999999999999
Q ss_pred CCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEE
Q 003467 97 DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALA 176 (817)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (817)
.+..++++.. ..++..+.+.|..-..-. .... +..+-..+...
T Consensus 91 ~~~Llkt~~~-~~~v~~~~~~~~~a~~s~-----------------------~~~~-------------s~~~~~~~~~~ 133 (792)
T KOG1963|consen 91 DGELLKTFDN-NLPVHALVYKPAQADISA-----------------------NVYV-------------SVEDYSILTTF 133 (792)
T ss_pred CcEEEEEEec-CCceeEEEechhHhCccc-----------------------eeEe-------------ecccceeeeec
Confidence 9999999884 455555555433210000 0000 00000011111
Q ss_pred e--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCce
Q 003467 177 C--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL 254 (817)
Q Consensus 177 ~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~ 254 (817)
+ .-++++=+.+.+.... ....+..|.. -.++.+++.|.+.+..- +..+.+|+..++. ..... ......|..
T Consensus 134 s~~~~~q~~~~~~~t~~~~-~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~---~~~~~~Htf 206 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSA-KGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT-KHTSS---RDITVHHTF 206 (792)
T ss_pred ccccccceeeeEeeecccc-chhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccc-eeecc---chhhhhhcc
Confidence 1 1122222222211110 0012223322 45778888887666554 4489999988765 11111 111225666
Q ss_pred eEEEeEEecCC-eEEEEcCCCcEEEEeCCC----CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 255 CIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 255 ~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
.+.+.+++|++ .+++++.||.|.+|.--. ......++.|...|.+++|+++|.+|++||.+|.+.+|.+.++..
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k- 285 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK- 285 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-
Confidence 78999999999 799999999999996432 223567889999999999999999999999999999999998762
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
.-+..-...|..+.++ ||+. +......|..
T Consensus 286 -----------------qfLPRLgs~I~~i~vS---------~ds~------------------------~~sl~~~DNq 315 (792)
T KOG1963|consen 286 -----------------QFLPRLGSPILHIVVS---------PDSD------------------------LYSLVLEDNQ 315 (792)
T ss_pred -----------------ccccccCCeeEEEEEc---------CCCC------------------------eEEEEecCce
Confidence 2345557788999987 7775 6777777999
Q ss_pred EEEEeCCcccccCCcccCCCC----CCCceeeecceeecCCe--EEEEEeCCeEEEEEecccCCcccCCCCCCCCcccee
Q 003467 410 LFAYCANEFTKFSPHEICPAP----QRVPIHLVHNTIFSHTS--LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 483 (817)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~--~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~ 483 (817)
|.+....+............+ ..........+.++|.- ..+....+.+.+|++-+....
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i--------------- 380 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI--------------- 380 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee---------------
Confidence 988877554432221111111 23345666677788733 333445558888887654422
Q ss_pred eeee-----e-----cCCCCeEEEEecCCCcEEEEEc-----------CCceEEEEeecCCCCCceEEEeeecCCccccc
Q 003467 484 VQVK-----S-----KASRKIICSTISNSGMLFAYSD-----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQF 542 (817)
Q Consensus 484 ~~~~-----~-----~~~~~i~~~~~s~~g~~la~~~-----------~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (817)
+++. . .....++.++.+-.|.++++.. ...+++|.... ..+-|.+.......|...
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~---~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP---NSKTFILNTKINNPHGNA 457 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC---CcceeEEEEEEecCCCce
Confidence 2211 1 1123477888888999998842 13467888765 445565665544555554
Q ss_pred eeEEEEe-cCC-CEEEEEecCCcEEEEEccCCceee------eeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC
Q 003467 543 AHSMIFS-YDS-SQLIIAGHDRRIYVVDVSSSELLH------TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 614 (817)
Q Consensus 543 i~~~~fs-pd~-~~l~~~~~dg~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d 614 (817)
+...+|. +-. .++++++.||.++||-+...+.+. +.... -..|..++++++||.||..||.+ .+
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-------~sy~k~~i~a~~fs~dGslla~s-~~ 529 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-------GSYHKTPITALCFSQDGSLLAVS-FD 529 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-------eccccCcccchhhcCCCcEEEEe-cC
Confidence 4444443 333 389999999999999984322111 11000 01168899999999999766665 57
Q ss_pred CcEEEEECCCcceEEEEecCCCCCeEEEEecCC-CCCeEEEEecCCeEEEEEcCCCccccc
Q 003467 615 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ-NNNVLIITTSSNQVYVFDVEAKQLGEW 674 (817)
Q Consensus 615 g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~-d~~~l~~~~~d~~i~vwd~~~~~~~~w 674 (817)
++|.+||..+.............++..+.|... -....++......+.+|++.+..+ .|
T Consensus 530 ~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l-~w 589 (792)
T KOG1963|consen 530 DTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL-IW 589 (792)
T ss_pred CEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe-ec
Confidence 789999998843222222222334444444330 122334455667899999988876 55
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.9e-26 Score=218.45 Aligned_cols=284 Identities=20% Similarity=0.272 Sum_probs=234.3
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC-CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS-GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
-.|..-|.++++|...+++.+|+. |.|+|||+..... .....+.+... ..-|+++.+.|||+. |++||.-.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~r-dnyiRSckL~pdgrt------LivGGeas 487 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNR-DNYIRSCKLLPDGRT------LIVGGEAS 487 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCc-ccceeeeEecCCCce------EEeccccc
Confidence 357778888999999999999987 7899999974321 11122222222 567999999999998 99999999
Q ss_pred eEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 89 SVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 89 ~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
++.|||+.... ....+..-.-..++++.+||.
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDa---------------------------------------------- 521 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDA---------------------------------------------- 521 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc----------------------------------------------
Confidence 99999997644 445566656778889999998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
+.+++++.||.|.|||+.+...+ +.|.+|+..+.|+..++||..|-||+-|.+||.||+++++.+....
T Consensus 522 ----kvcFsccsdGnI~vwDLhnq~~V---rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---- 590 (705)
T KOG0639|consen 522 ----KVCFSCCSDGNIAVWDLHNQTLV---RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---- 590 (705)
T ss_pred ----ceeeeeccCCcEEEEEcccceee---ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----
Confidence 58899999999999999855444 9999999999999999999999999999999999999998887664
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
....|.++.+.|++ .++.|-.++.+.+.... +.....+..|..-|+++.|.+.|+++++.|.|+.+..|...-
T Consensus 591 -----F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 591 -----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred -----hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 77889999999999 79999999999988876 555677888999999999999999999999999999999887
Q ss_pred ccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 326 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
+. .+.+.. ....|.+..++ .|.+ ++++|+
T Consensus 665 Ga-----------------siFqsk-E~SsVlsCDIS---------~ddk------------------------yIVTGS 693 (705)
T KOG0639|consen 665 GA-----------------SIFQSK-ESSSVLSCDIS---------FDDK------------------------YIVTGS 693 (705)
T ss_pred cc-----------------ceeecc-ccCcceeeeec---------cCce------------------------EEEecC
Confidence 76 222222 34557777776 6666 999999
Q ss_pred CCCeEEEEeC
Q 003467 406 DDTKLFAYCA 415 (817)
Q Consensus 406 ~dg~i~~~~~ 415 (817)
.|....+|.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9988888754
No 118
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-26 Score=232.05 Aligned_cols=298 Identities=17% Similarity=0.224 Sum_probs=192.8
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecC----------ceEEEEeeecCC
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSID----------FSIWQMAVAPSN 120 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----------~~i~~~~~s~~~ 120 (817)
..+.+...|.++|.++.||+||+| ||+||.|+.|+||.+..-+....-.+.. +.+..+..++..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKy------LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKY------LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCce------eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 345666455899999999999999 9999999999999976522110000000 000000011100
Q ss_pred Cccceeec-cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc
Q 003467 121 SSLMHAVT-NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL 199 (817)
Q Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 199 (817)
..--.... .+-......+..........+ .....| +..+++-.+=+..++|++++.|.+|++|++.....+ +.|
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP-~~ef~G-Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL---~~F 406 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKP-FCEFKG-HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL---KVF 406 (712)
T ss_pred ccccccccccccCCccccCCCccccccccc-hhhhhc-cchhheecccccCCeeEeccccccEEeecCCCccee---eEE
Confidence 00000000 000000001111110000000 011111 112222223344459999999999999999877776 333
Q ss_pred CCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEE
Q 003467 200 PRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQ 277 (817)
Q Consensus 200 ~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~ 277 (817)
.|..-|+||+|+| |.+++++|+-||.||||++...+.+.-. .....|++++|.||| ..+.|+.+|.++
T Consensus 407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~---------Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN---------DLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh---------hhhhhheeEEeccCCceEEEEEeccEEE
Confidence 6999999999999 6789999999999999999766655444 356899999999999 689999999999
Q ss_pred EEeCCCCeEEEEeec--C------ccCeeEEEEecCC-CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeec
Q 003467 278 FWDSRHGTLLQAHSF--H------KGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS 348 (817)
Q Consensus 278 iwd~~~~~~~~~~~~--h------~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (817)
+|+....++.....- | ...|+.+.|.|.. ..|++.+.|..|+|||..... ++..
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-----------------lv~K 539 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-----------------LVHK 539 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-----------------hhhh
Confidence 999998777655432 1 2279999998744 458888899999999997766 5556
Q ss_pred cccCCCccc--eeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 349 VRAHTHDVR--ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 349 ~~~h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
++++...-. ...|+ .||+ ++++++.|..|++|+.....
T Consensus 540 fKG~~n~~SQ~~Asfs---------~Dgk------------------------~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFS---------SDGK------------------------HIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred hcccccCCcceeeeEc---------cCCC------------------------EEEEeecCceEEEEeCCCCc
Confidence 665543322 22333 6666 99999999999999987644
No 119
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=228.15 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=155.7
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
.|+.++.|.+|+......+..+.+|.+.|.+++|+|+..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~----------------------------------------- 87 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS----------------------------------------- 87 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC-----------------------------------------
Confidence 356688999999988888899999999999999999732
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCce-----eEeeccCCccceEEEEEEccCCCEE-EEeeCCCcEEEEECCCCc
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDEL-----IYHRSLPRVSGRVLSVTWSADGNML-YSGSSDGYIRSWDAKLGY 236 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~h~~~v~~v~~s~dg~~l-~s~~~dg~i~vwd~~~g~ 236 (817)
.+||+|+.||.|+|||+.++... .....+.+|...|.+++|+|++..+ ++++.|++|++||+++++
T Consensus 88 --------~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 88 --------EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159 (568)
T ss_pred --------CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence 38999999999999999754321 1124578899999999999998764 789999999999999998
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEE-----EEecCCCEEE
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL-----AAAPSHNRVF 310 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l-----~~s~~~~~l~ 310 (817)
.+..+. +...|.+++|+++| .|++++.|+.|++||+++++.+.++.+|.+.+.+. .|++++.+|+
T Consensus 160 ~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 160 RAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred EEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 776664 44679999999999 67788899999999999999999999998865443 3458889999
Q ss_pred EEccCC----cEEEEEeecc
Q 003467 311 STGSDG----QVILYKASCE 326 (817)
Q Consensus 311 ~~~~dg----~i~iw~~~~~ 326 (817)
++|.|+ +|++||+...
T Consensus 231 TtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEcCCCCccEEEEEECCCC
Confidence 988774 7999999863
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-24 Score=197.09 Aligned_cols=277 Identities=16% Similarity=0.198 Sum_probs=213.0
Q ss_pred ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 202 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
.+..|.+|.|+|.+..|++++.||++++||+........+. |..++.+++|.++..+++|+.||.|+.+|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCCceEEEeccCceEEEEEe
Confidence 36789999999999999999999999999999887777775 899999999999999999999999999999
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEe
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 361 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 361 (817)
.++.. ..+..|...|.|+..++....+++||.|++|++||..... ...... ....|.++..
T Consensus 83 n~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----------------~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 83 NTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----------------VVGTFD-QGKKVYCMDV 143 (323)
T ss_pred cCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----------------cccccc-cCceEEEEec
Confidence 97764 4556799999999999988899999999999999998643 122222 2236777776
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecce
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 441 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (817)
. ++.|+.|+.|..+.+||+++.....+.+
T Consensus 144 ~-----------------------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~r---------------- 172 (323)
T KOG1036|consen 144 S-----------------------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRR---------------- 172 (323)
T ss_pred c-----------------------------------CCEEEEeecCceEEEEEcccccchhhhc----------------
Confidence 2 3489999999999999998765322111
Q ss_pred eecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc-EEEEEcCCceEEEEee
Q 003467 442 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELK 520 (817)
Q Consensus 442 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~i~l~~~~ 520 (817)
...-...++|+++-|++. +++.+-+|.+.+=.++
T Consensus 173 ---------------------------------------------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 173 ---------------------------------------------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred ---------------------------------------------cccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 001114567777777665 4444677877765555
Q ss_pred cC-CCCCceEEEeeecCCcc----ccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 003467 521 KG-KVGQGEWIINKRQLPRK----LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP 595 (817)
Q Consensus 521 ~~-~~~~~~~~~~~~~~~~~----~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (817)
.. ....+.+.++-...... .-+|++|+|+|--..||+|+.||.|.+||+.+.+.+..|.. ....
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-----------~~~S 276 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-----------YETS 276 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-----------CCCc
Confidence 42 11122222221111111 12899999999999999999999999999998888888887 6788
Q ss_pred eeEEEEccCCCEEEEEeC
Q 003467 596 ITKMFTSSDGQWLAAVNC 613 (817)
Q Consensus 596 i~~l~~s~dg~~la~~~~ 613 (817)
|.+++|+.||..||+++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999974
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=181.05 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=204.2
Q ss_pred cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC------CCe--------E-EEEEeecCceEEE
Q 003467 49 WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY------DLK--------Q-KIVLQSIDFSIWQ 113 (817)
Q Consensus 49 ~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~~--------~-~~~~~~~~~~i~~ 113 (817)
+.++..+.. ...|.+++|.|.|.+ .+.++...+.++--.. .+. . -+.-+.|.+.|+|
T Consensus 23 f~~i~~l~d--sqairav~fhp~g~l------yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 23 FEAINILED--SQAIRAVAFHPAGGL------YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred eEEEEEecc--hhheeeEEecCCCce------EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 445555554 578999999999987 8899998888876432 111 1 1233468899999
Q ss_pred EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEec--CCC
Q 003467 114 MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRIT--DSD 191 (817)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~ 191 (817)
.+|+|+| +++|+|+.|.+|++..++ +.+
T Consensus 95 ~~ws~~g--------------------------------------------------eliatgsndk~ik~l~fn~dt~~ 124 (350)
T KOG0641|consen 95 TAWSPCG--------------------------------------------------ELIATGSNDKTIKVLPFNADTCN 124 (350)
T ss_pred EEecCcc--------------------------------------------------CeEEecCCCceEEEEeccccccc
Confidence 9999999 599999999999997665 222
Q ss_pred ceeEeeccCCccceEEEEEEccC----CCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe
Q 003467 192 ELIYHRSLPRVSGRVLSVTWSAD----GNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT 266 (817)
Q Consensus 192 ~~~~~~~~~~h~~~v~~v~~s~d----g~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 266 (817)
..-....+.-|.+.|..++|..+ |..|++++. |..|.+-|..+|+..+.+. +|.+-|.++---.+-.
T Consensus 125 ~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilalyswn~~m 196 (350)
T KOG0641|consen 125 ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALYSWNGAM 196 (350)
T ss_pred ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEEEecCcE
Confidence 22223567789999999999643 457777664 7788999999999998887 7888888875544558
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeec--C-----ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccc
Q 003467 267 LVSADSTGSVQFWDSRHGTLLQAHSF--H-----KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 339 (817)
Q Consensus 267 l~s~~~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 339 (817)
+++|+.|.+|++||++-..++.++.. | ...|.+++..|.|+.|++|-.|....+||+..++
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r------------ 264 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR------------ 264 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc------------
Confidence 99999999999999998888877642 2 2579999999999999999999999999999998
Q ss_pred cceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 340 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+..|+.+|+++.|+ |... ++++++.|..|++-|++.
T Consensus 265 -----~iq~f~phsadir~vrfs---------p~a~------------------------yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 265 -----MIQRFHPHSADIRCVRFS---------PGAH------------------------YLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred -----eeeeeCCCccceeEEEeC---------CCce------------------------EEEEecccceEEEeeccc
Confidence 788999999999999998 5554 999999999999999874
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-26 Score=211.55 Aligned_cols=295 Identities=14% Similarity=0.194 Sum_probs=228.9
Q ss_pred eeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCC
Q 003467 196 HRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTG 274 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg 274 (817)
...|.+|...|.|++=+|.. ..+++|+.||.|++||+.+-.+...+. .|.+.|..+++.. +.+++++.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v~~-~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICVTQ-TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee--------cccCceeeEEecc-cceEEecCCc
Confidence 46778999999999999987 789999999999999999999999998 6999999999987 7899999999
Q ss_pred cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 275 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
+|+.|.++ +.++.++.+ ...++.+.-+..++.++++|.+ |.+||..-.. ++..+.--..
T Consensus 130 tvK~wk~~-~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-----------------Pv~smswG~D 188 (433)
T KOG0268|consen 130 TVKQWKID-GPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-----------------PVSSMSWGAD 188 (433)
T ss_pred ceeeeecc-CCcceeeec-cccccccccccccccccccCce--eeecccccCC-----------------ccceeecCCC
Confidence 99999987 456777765 5567777777677777887765 8999987655 4445555555
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCc
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 434 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 434 (817)
.|.++.++ |-.. ..|++++.|+.|.+||+.+...++
T Consensus 189 ti~svkfN---------pvET-----------------------sILas~~sDrsIvLyD~R~~~Pl~------------ 224 (433)
T KOG0268|consen 189 SISSVKFN---------PVET-----------------------SILASCASDRSIVLYDLRQASPLK------------ 224 (433)
T ss_pred ceeEEecC---------CCcc-----------------------hheeeeccCCceEEEecccCCccc------------
Confidence 56666665 3322 478888888888888877533111
Q ss_pred eeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCce
Q 003467 435 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 514 (817)
Q Consensus 435 ~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i 514 (817)
T Consensus 225 -------------------------------------------------------------------------------- 224 (433)
T KOG0268|consen 225 -------------------------------------------------------------------------------- 224 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCC-ceeeeeccCcccccccCCCCC
Q 003467 515 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSE 593 (817)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 593 (817)
+ ..+.- ..+.++|+|.+--+++|++|..++.||+... +.+....+ |.
T Consensus 225 ------------K------Vi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-----------hv 272 (433)
T KOG0268|consen 225 ------------K------VILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-----------HV 272 (433)
T ss_pred ------------e------eeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcc-----------cc
Confidence 0 00000 2456889998888899999999999998654 45566666 99
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC-ccc
Q 003467 594 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK-QLG 672 (817)
Q Consensus 594 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~-~~~ 672 (817)
..|.+++|||.|+-+++|+.|.+|+||....+........-.-..|.++.||. |.+++++|+.|+.|++|..... +++
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhcC
Confidence 99999999999999999999999999999888755333221125799999999 9999999999999999998644 444
Q ss_pred cchhc
Q 003467 673 EWSMQ 677 (817)
Q Consensus 673 ~ws~~ 677 (817)
..+.+
T Consensus 352 v~t~r 356 (433)
T KOG0268|consen 352 VITPR 356 (433)
T ss_pred CCChh
Confidence 44443
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5.6e-25 Score=198.56 Aligned_cols=298 Identities=13% Similarity=0.156 Sum_probs=225.7
Q ss_pred EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc
Q 003467 102 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 181 (817)
Q Consensus 102 ~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 181 (817)
..+..|..++.+.+|++|| .++|+|+.|-.
T Consensus 106 ~ylt~HK~~cR~aafs~DG--------------------------------------------------~lvATGsaD~S 135 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG--------------------------------------------------SLVATGSADAS 135 (430)
T ss_pred EEEeecccceeeeeeCCCC--------------------------------------------------cEEEccCCcce
Confidence 4567899999999999999 49999999999
Q ss_pred EEEEEec------C---------CCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 182 VRIYRIT------D---------SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 182 i~iwd~~------~---------~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
|+|.|++ . ...-..+++|-.|...|+++.|+|....|++|+.|++|+++|...-...+.++.-
T Consensus 136 IKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-- 213 (430)
T KOG0640|consen 136 IKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-- 213 (430)
T ss_pred EEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--
Confidence 9999986 1 1111346888899999999999999999999999999999999765443333321
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEe---ecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
.....|.++.|.|.| .++.|....++++||+++.++.... ..|.+.|+++.+++.++..++++.||.|++||
T Consensus 214 ----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 214 ----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 356789999999999 7888888899999999998876544 46899999999999999999999999999999
Q ss_pred eecccCCCCCCCCCccccceEEEeecc-ccCC-CccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSV-RAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
-.+.+ ++.++ +.|. ..|.+..|. .+++ +
T Consensus 290 GVS~r-----------------Cv~t~~~AH~gsevcSa~Ft---------kn~k------------------------y 319 (430)
T KOG0640|consen 290 GVSNR-----------------CVRTIGNAHGGSEVCSAVFT---------KNGK------------------------Y 319 (430)
T ss_pred cccHH-----------------HHHHHHhhcCCceeeeEEEc---------cCCe------------------------E
Confidence 88777 55554 4453 346666665 6665 8
Q ss_pred EEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCcc
Q 003467 401 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 480 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~ 480 (817)
+++.|.|..+++|.+.+...+ .
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l-----------------------------~----------------------------- 341 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRML-----------------------------K----------------------------- 341 (430)
T ss_pred EeecCCcceeeeeeecCCceE-----------------------------E-----------------------------
Confidence 888888888888877642200 0
Q ss_pred ceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec
Q 003467 481 SLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 560 (817)
Q Consensus 481 ~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~ 560 (817)
.+.-.|.. +.+ ..-+...|.....+++.-.+
T Consensus 342 -----------------------~YtGAg~t-------------grq-------------~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 342 -----------------------EYTGAGTT-------------GRQ-------------KHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred -----------------------EEecCCcc-------------cch-------------hhhhhhhhcCccceEEcccc
Confidence 00000111 111 01223345555566655543
Q ss_pred -CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 561 -DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 561 -dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
.+.+.-||..++..+..+... |++.+..+.-||.+.-+.+++.|-.++.|--
T Consensus 373 as~slcsWdaRtadr~~l~slg----------Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVALLSLG----------HNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccCceeeccccchhhhhhcccC----------CCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 567889998887666555432 9999999999999999999999999999963
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.6e-25 Score=211.41 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=205.6
Q ss_pred ccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCC------cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 10 DWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSG------WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 10 ~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~------~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
-.|++.|+.+.+-|+. ..+|+++..+.|.|||+.+.... .....++.||. ..=.+|+|++... .+|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-~eg~glsWn~~~~-----g~Ll 194 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-KEGYGLSWNRQQE-----GTLL 194 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-ccccccccccccc-----eeEe
Confidence 4688999999998864 56778888999999999754321 11234788884 4467899998765 5799
Q ss_pred EeeCCCeEEEEECCCCe-------EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 83 SSSIDGSVSEWDLYDLK-------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
+++.|++|++||++... +...+.+|...|..++|++-..
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~---------------------------------- 240 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE---------------------------------- 240 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccch----------------------------------
Confidence 99999999999997532 3467889999999999999774
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCC
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~ 234 (817)
.+++++++|+.+.|||++++ .....+...+|.+.|.|++|+|-+ ..||||+.|++|.+||+++
T Consensus 241 ---------------~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 241 ---------------DLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred ---------------hhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 38999999999999999853 333337788999999999999954 5788999999999999997
Q ss_pred Cc-eEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCC--------------eEEEEeecCccCe
Q 003467 235 GY-EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG--------------TLLQAHSFHKGDV 297 (817)
Q Consensus 235 g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v 297 (817)
.. .+..+. +|+..|..|.|+|.. .|++++.|+.+.+||+..- +++....+|.+.|
T Consensus 305 L~~~lh~~e--------~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 305 LNKPLHTFE--------GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred cccCceecc--------CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 54 445554 799999999999988 6999999999999998641 2356678899999
Q ss_pred eEEEEecCCCE-EEEEccCCcEEEEEeecc
Q 003467 298 NALAAAPSHNR-VFSTGSDGQVILYKASCE 326 (817)
Q Consensus 298 ~~l~~s~~~~~-l~~~~~dg~i~iw~~~~~ 326 (817)
..+.|+|+..+ |++...|+.+.||+....
T Consensus 377 ~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 377 SDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 99999998865 556788999999998753
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=195.73 Aligned_cols=309 Identities=14% Similarity=0.114 Sum_probs=223.1
Q ss_pred EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc
Q 003467 102 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 181 (817)
Q Consensus 102 ~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 181 (817)
..+++|+..|++++|+.|| +.||+++.|+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdG--------------------------------------------------K~lat~~~Dr~ 109 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG--------------------------------------------------KKLATISGDRS 109 (420)
T ss_pred hhhhccCCceeeeEEcCCC--------------------------------------------------ceeEEEeCCce
Confidence 4578999999999999999 59999999999
Q ss_pred EEEEEecCCCceeEeeccCC--ccceEEEEEEccCCCEEEEeeC-CCcEEEEECCC---CceEE-EEEeecCCCCCCCce
Q 003467 182 VRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL---GYEIY-RITVGLGGLGSGPEL 254 (817)
Q Consensus 182 i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~---g~~~~-~~~~~~~~~~~~~~~ 254 (817)
|+||++..-....+ +.++. .-+.-+.++|+||-+-++.... ..++++|-+.. |.... .+..+.-...+.|..
T Consensus 110 Ir~w~~~DF~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v 188 (420)
T KOG2096|consen 110 IRLWDVRDFENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQV 188 (420)
T ss_pred EEEEecchhhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhccc
Confidence 99999973221110 11111 1124678999999887665554 45799997642 22111 111111112335666
Q ss_pred eEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCC
Q 003467 255 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 333 (817)
Q Consensus 255 ~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 333 (817)
.+..+-...++ .|++++.|..|.+|+++ |+.++.+......-...+.||+|++|++++..-.|++|..--.+-+.
T Consensus 189 ~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~--- 264 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT--- 264 (420)
T ss_pred ceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc---
Confidence 77777766666 79999999999999999 99999998877778889999999999999999999999986544211
Q ss_pred CCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 003467 334 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 413 (817)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~ 413 (817)
.+.-..+..+.+|+..|.+++|+ ++.. .+++.+.||+.++|
T Consensus 265 ------fqev~rvf~LkGH~saV~~~aFs---------n~S~------------------------r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 265 ------FQEVKRVFSLKGHQSAVLAAAFS---------NSST------------------------RAVTVSKDGKWRIW 305 (420)
T ss_pred ------hhhhhhhheeccchhheeeeeeC---------CCcc------------------------eeEEEecCCcEEEe
Confidence 11222567889999999999998 6665 99999999999999
Q ss_pred eCCcccccCC----cccCCCCCCCceeeecceeecCCeEEEEEeCC-eEEEEEecccCCcccCCCCCCCCccceeeeeee
Q 003467 414 CANEFTKFSP----HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-RLDILSVRLENNVESRSSSGGHASTSLLVQVKS 488 (817)
Q Consensus 414 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 488 (817)
|.+-.....+ .+..+.|.....+....+.++|++..++...+ .+.++.-..++ ....++.
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~---------------~~~~~e~ 370 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK---------------DYPELED 370 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc---------------cchhHHH
Confidence 9874322211 11111222222233347889999999887766 78888766543 3344555
Q ss_pred cCCCCeEEEEecCCCcEEEEEcCCceEEEEe
Q 003467 489 KASRKIICSTISNSGMLFAYSDHVKPSLFEL 519 (817)
Q Consensus 489 ~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~ 519 (817)
-+...|.+++|+++|++++++.+..++++.-
T Consensus 371 ~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred hhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 6678899999999999999999999988863
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.3e-25 Score=192.26 Aligned_cols=241 Identities=24% Similarity=0.298 Sum_probs=191.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc--CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+||+++.|++|+|+...++....+..+|.+|.++|..++|.. -|.+||+++.||.|.||.-++|+-.+....
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~----- 98 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH----- 98 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-----
Confidence 6999999999999999997776677799999999999999976 799999999999999999888854333321
Q ss_pred CCCCceeEEEeEEecCC---eEEEEcCCCcEEEEeCCCC---eEEEEeecCccCeeEEEEecC---C-----------CE
Q 003467 249 GSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPS---H-----------NR 308 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~~---~-----------~~ 308 (817)
..|+..|++++|.|.+ .|+++++||.|.|.+.+.. ........|.-.|++++|.|. | +.
T Consensus 99 -~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 99 -AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred -hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 2699999999999987 6999999999999988753 223445789999999999986 4 57
Q ss_pred EEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccc
Q 003467 309 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 388 (817)
Q Consensus 309 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
|++||.|..|++|+...+. |..-..+.+|+..|+.++++|... -
T Consensus 178 lvSgGcDn~VkiW~~~~~~---------------w~~e~~l~~H~dwVRDVAwaP~~g--------l------------- 221 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDS---------------WKLERTLEGHKDWVRDVAWAPSVG--------L------------- 221 (299)
T ss_pred eeccCCccceeeeecCCcc---------------hhhhhhhhhcchhhhhhhhccccC--------C-------------
Confidence 9999999999999988753 666677999999999999984332 0
Q ss_pred cccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCc
Q 003467 389 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~ 468 (817)
...++++++.||++.+|....... + |..
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e--~------------------------------------wk~------ 249 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYE--P------------------------------------WKK------ 249 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccC--c------------------------------------ccc------
Confidence 113899999999999998763110 0 100
Q ss_pred ccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeec
Q 003467 469 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK 521 (817)
Q Consensus 469 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~ 521 (817)
+++.. ....+..+.+|..|.+|+++ .++.+.+|.-..
T Consensus 250 ------------tll~~----f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 250 ------------TLLEE----FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ------------ccccc----CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 01111 22567888999999999995 779999997654
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.2e-23 Score=189.12 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=207.4
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
......|+.+.|+|.+..|++++=||++++||+..... ...+. ++.++.+++|.++.. +++|+.||.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~--~~~plL~c~F~d~~~-------~~~G~~dg~ 76 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFK--HGAPLLDCAFADEST-------IVTGGLDGQ 76 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhhee--cCCceeeeeccCCce-------EEEeccCce
Confidence 34457899999999999999999999999999987652 33333 267999999998654 899999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
|+.+|++++... .+..|..+|.||.+++..
T Consensus 77 vr~~Dln~~~~~-~igth~~~i~ci~~~~~~------------------------------------------------- 106 (323)
T KOG1036|consen 77 VRRYDLNTGNED-QIGTHDEGIRCIEYSYEV------------------------------------------------- 106 (323)
T ss_pred EEEEEecCCcce-eeccCCCceEEEEeeccC-------------------------------------------------
Confidence 999999998744 556699999999999765
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
..+++|+-|+.|++||..+.... ..+. ....|.++..+ |+.|++|+.|..+.+||+++.........
T Consensus 107 -~~vIsgsWD~~ik~wD~R~~~~~---~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~re------ 173 (323)
T KOG1036|consen 107 -GCVISGSWDKTIKFWDPRNKVVV---GTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRE------ 173 (323)
T ss_pred -CeEEEcccCccEEEEeccccccc---cccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhcc------
Confidence 48999999999999999742221 2222 33489888875 67999999999999999998765543321
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC----eEEEEeecCc---------cCeeEEEEecCCCEEEEEccC
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG----TLLQAHSFHK---------GDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~s~~~~~l~~~~~d 315 (817)
+..+..+.++++.|++ -+++++-+|.|.+=.++.. .....|+.|. -+|.+++|+|-...+++||.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 2577889999999977 5889999999887655544 3345666665 368999999999999999999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
|.|.+||+.+.+ .+.++..-...|.+++|+
T Consensus 254 G~V~~Wd~~~rK-----------------rl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 254 GIVNIWDLFNRK-----------------RLKQLAKYETSISSLSFS 283 (323)
T ss_pred ceEEEccCcchh-----------------hhhhccCCCCceEEEEec
Confidence 999999999887 556666666679999997
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.2e-24 Score=207.27 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=228.1
Q ss_pred CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc---eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcE
Q 003467 201 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 276 (817)
Q Consensus 201 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i 276 (817)
.|..-|.+++++...++++||+. |.|+|||+.... .+..+.. ......|.++..+||| .|++|+.-.++
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc------l~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC------LNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc------cCcccceeeeEecCCCceEEecccccee
Confidence 47778899999999999999986 699999996431 1222211 1356778899999999 79999999999
Q ss_pred EEEeCCCCeEE--EEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 277 QFWDSRHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 277 ~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
.|||+..-+.. ..+........+++.+||.+..|++..||.|.|||+.+.. .++++.+|+.
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----------------~VrqfqGhtD 552 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----------------LVRQFQGHTD 552 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----------------eeecccCCCC
Confidence 99999865443 3344444567889999999999999999999999999987 8999999999
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCc
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 434 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 434 (817)
.+.||.++ +||. .|.+||.|.+|+.||+++..++..+..
T Consensus 553 GascIdis---------~dGt------------------------klWTGGlDntvRcWDlregrqlqqhdF-------- 591 (705)
T KOG0639|consen 553 GASCIDIS---------KDGT------------------------KLWTGGLDNTVRCWDLREGRQLQQHDF-------- 591 (705)
T ss_pred CceeEEec---------CCCc------------------------eeecCCCccceeehhhhhhhhhhhhhh--------
Confidence 99999998 7775 999999999999999998664433221
Q ss_pred eeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCc
Q 003467 435 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVK 513 (817)
Q Consensus 435 ~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~ 513 (817)
...|.++..+|.+.||++| .++.
T Consensus 592 --------------------------------------------------------~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 592 --------------------------------------------------------SSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred --------------------------------------------------------hhhheecccCCCccceeeecccCc
Confidence 1567888899999999998 5566
Q ss_pred eEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 003467 514 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE 593 (817)
Q Consensus 514 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (817)
+.+..... ..+..+..|...|.++.|.+-|+++++.+.|..+..|...-|.-+...+ ..
T Consensus 616 vevlh~sk---------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~ 674 (705)
T KOG0639|consen 616 VEVLHTSK---------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ES 674 (705)
T ss_pred EEEEecCC---------ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------cc
Confidence 66665543 1225566777899999999999999999999999999998887776666 47
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 594 PPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 594 ~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
..|.+..+|-|.+|+++|+.|..-.||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 88999999999999999999988888864
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.5e-23 Score=185.09 Aligned_cols=304 Identities=18% Similarity=0.261 Sum_probs=227.1
Q ss_pred eeeeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCC----CcEEEEEE------cCCCCCcEEEEEEeecCC
Q 003467 5 RNSSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTS----GWHCQLTV------HGDPKSRISSLVWCHAGK 73 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~------~g~~~~~V~~l~~s~~~~ 73 (817)
+..|...|.+.|++|.+-+ .|+|+++|+.||.|.|||++.... ...+.... ...|+-.|+.+.|-|-+.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 4567889999999999988 689999999999999999985431 11111111 223478999999999766
Q ss_pred CCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 74 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 74 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
- .+.+++.|.+++|||.++.+....+. ..+.|++-+++|-...-
T Consensus 115 G-----mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sH------------------------------ 158 (397)
T KOG4283|consen 115 G-----MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSH------------------------------ 158 (397)
T ss_pred c-----eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcc------------------------------
Confidence 3 35567889999999999988777776 67889999999865211
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCE-EEEeeCCCcEEEEEC
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDA 232 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~ 232 (817)
.++|+|..+-.|++-|+..+..- ++|.+|.+.|.++.|+|...+ |++|+.||.|++||+
T Consensus 159 -----------------cLiA~gtr~~~VrLCDi~SGs~s---H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 159 -----------------CLIAAGTRDVQVRLCDIASGSFS---HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDI 218 (397)
T ss_pred -----------------eEEEEecCCCcEEEEeccCCcce---eeeccccCceEEEEeccCceeEEEecCCCceEEEEEe
Confidence 28999999999999999977655 899999999999999998886 678999999999999
Q ss_pred CCC-ceEEEEEeec------CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee---cCccC----e
Q 003467 233 KLG-YEIYRITVGL------GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS---FHKGD----V 297 (817)
Q Consensus 233 ~~g-~~~~~~~~~~------~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~----v 297 (817)
+.. .+...+...- ......|.+.|..++|..++ ++++.+.|..+++|+...|+....-. .|... +
T Consensus 219 Rrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~ 298 (397)
T KOG4283|consen 219 RRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAV 298 (397)
T ss_pred ecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceE
Confidence 864 3444443221 11234688999999999999 79999999999999998875432111 11111 1
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
. +. +.+...++---.++.+.++++-.+. .+..+..|...+.+.++. |+=+
T Consensus 299 ~-~~-~~~s~vfv~~p~~~~lall~~~sgs-----------------~ir~l~~h~k~i~c~~~~---------~~fq-- 348 (397)
T KOG4283|consen 299 H-IQ-SMDSDVFVLFPNDGSLALLNLLEGS-----------------FVRRLSTHLKRINCAAYR---------PDFE-- 348 (397)
T ss_pred E-Ee-ecccceEEEEecCCeEEEEEccCce-----------------EEEeeecccceeeEEeec---------Cchh--
Confidence 1 12 2233333333346888999888877 788888898888888876 4433
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
...+|..|+.+..|...
T Consensus 349 ----------------------~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 349 ----------------------QCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ----------------------hhhccccCCcccccccc
Confidence 78899999999999763
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=200.14 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=214.4
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CCeEEEEECCCCeEEEEEeecCceEEE
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DGSVSEWDLYDLKQKIVLQSIDFSIWQ 113 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~i~~ 113 (817)
.++.+||+.+|.. ..++.|.....-.++..-. +.+ ++++.. ...|.+|.+..........--.++|.+
T Consensus 18 ~~~~~~dl~TGt~----~~~ykg~~~a~~~sl~~l~-~~y------llsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 18 INCIVWDLRTGTS----LLQYKGSYLAQAASLTALN-NEY------LLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA 86 (476)
T ss_pred cceeEEecCCCce----eEEecCcccccchhhhhhc-hhh------eeeecccCccccccccCchhhhhhhcccccceee
Confidence 5599999999984 5555554211111222111 233 666544 457999999876655544455788999
Q ss_pred EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce
Q 003467 114 MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 193 (817)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 193 (817)
++-+|.| .+|+.|+..|.|++|.+.+|..+
T Consensus 87 l~s~n~G--------------------------------------------------~~l~ag~i~g~lYlWelssG~LL 116 (476)
T KOG0646|consen 87 LASSNLG--------------------------------------------------YFLLAGTISGNLYLWELSSGILL 116 (476)
T ss_pred eecCCCc--------------------------------------------------eEEEeecccCcEEEEEeccccHH
Confidence 9999999 36777779999999999999887
Q ss_pred eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC---------CceEEEEEeecCCCCCCCceeEEEeEEecC
Q 003467 194 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL---------GYEIYRITVGLGGLGSGPELCIWSLLSLRC 264 (817)
Q Consensus 194 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~---------g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 264 (817)
..+.+|-..|+|+.|+-||.+|+||+.||.|.+|++.. -+.+..+. .|.-.|.++...+.
T Consensus 117 ---~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~--------~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 117 ---NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS--------DHTLSITDLQIGSG 185 (476)
T ss_pred ---HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec--------cCcceeEEEEecCC
Confidence 78899999999999999999999999999999998642 23344444 79999999998876
Q ss_pred C---eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccc
Q 003467 265 G---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIK 341 (817)
Q Consensus 265 ~---~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (817)
| ++++++.|.++++||+..|.++.++.. ...+.+++.+|.++.+++|+.+|.|.+.++..-..... ++..-....
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-~v~~k~~~~ 263 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-GVNQKGRHE 263 (476)
T ss_pred CccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-ccccccccc
Confidence 5 899999999999999999999988864 67899999999999999999999999988765431110 000011111
Q ss_pred eEEEeeccccCCC--ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 342 KWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 342 ~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
.-+.+..+.+|.+ .|+||+++ -||. +|++|+.||.+++||+...+
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais---------~Dgt------------------------lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAIS---------TDGT------------------------LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ccceeeeeccccCCcceeEEEEe---------cCcc------------------------EEEeeCCCCCEEEEecchHH
Confidence 2235667788988 99999998 6665 99999999999999998765
Q ss_pred ccC
Q 003467 420 KFS 422 (817)
Q Consensus 420 ~~~ 422 (817)
.++
T Consensus 311 ~iR 313 (476)
T KOG0646|consen 311 CIR 313 (476)
T ss_pred HHH
Confidence 443
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=198.70 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=166.2
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC--CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 137 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (817)
.+.|++|.|+|..+. |+++|.|+++++|-+.. ...++.+.-...+|.+.+|.|+|.
T Consensus 213 ~~~I~sv~FHp~~pl------llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~---------------- 270 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPL------LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH---------------- 270 (514)
T ss_pred cCCceEEEecCCCce------EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc----------------
Confidence 478999999999988 99999999999998863 345677777789999999999994
Q ss_pred ccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCC
Q 003467 138 LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGN 216 (817)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~ 216 (817)
..+++++....++.||+.+.+... ...+.++. ..+.....+|+++
T Consensus 271 ---------------------------------~~i~~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~ 316 (514)
T KOG2055|consen 271 ---------------------------------SVIFTSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN 316 (514)
T ss_pred ---------------------------------eEEEecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC
Confidence 278899999999999998665433 34455554 4577788999999
Q ss_pred EEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCcc
Q 003467 217 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG 295 (817)
Q Consensus 217 ~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~ 295 (817)
+|+..+..|.|.+....+++.+..+. .++.|..++|+.|+ .|++++.+|.|.+||++...++.++.. .+
T Consensus 317 fia~~G~~G~I~lLhakT~eli~s~K---------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G 386 (514)
T KOG2055|consen 317 FIAIAGNNGHIHLLHAKTKELITSFK---------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DG 386 (514)
T ss_pred eEEEcccCceEEeehhhhhhhhheee---------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cC
Confidence 99999999999999999999999997 67899999999999 688888999999999999988888764 23
Q ss_pred Ce--eEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 296 DV--NALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 296 ~v--~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.| +.+|.++++.++++|+..|.|.|||.++
T Consensus 387 ~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 33 4566778888888888888888887655
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.2e-23 Score=185.20 Aligned_cols=261 Identities=20% Similarity=0.310 Sum_probs=205.9
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec--CCCCCCCceEE
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA--GKMGLPGGRLF 82 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~--~~~~~~~~~l~ 82 (817)
-..|-.+|.+-|+++.|.+-|+++|+|+.|++|.|||.......|.+......| .++|..+.|.+- |+. +|
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah-~~Si~rV~WAhPEfGqv------vA 77 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH-DGSIWRVVWAHPEFGQV------VA 77 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec-CCcEEEEEecCccccce------EE
Confidence 345667899999999999999999999999999999988777789999999888 899999999865 555 99
Q ss_pred EeeCCCeEEEEECCC---------CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 83 SSSIDGSVSEWDLYD---------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 83 s~~~d~~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
+++.|+++.||.=.. -....++......|..+.|.|....+
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL------------------------------ 127 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL------------------------------ 127 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce------------------------------
Confidence 999999999998521 12234566667889999999987544
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCcee---Eeecc-------CCccceEEEEEEccC---CCEEEE
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI---YHRSL-------PRVSGRVLSVTWSAD---GNMLYS 220 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~-------~~h~~~v~~v~~s~d---g~~l~s 220 (817)
.||+++.||.+|||+..+...+. +...+ ..+..+..|+.|+|. ..+|+.
T Consensus 128 ------------------klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 128 ------------------KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred ------------------EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 89999999999999987443332 11222 256778899999974 346777
Q ss_pred eeCC-----CcEEEEECCCCc-eEEEEEeecCCCCCCCceeEEEeEEecCC-----eEEEEcCCCcEEEEeCCCC-----
Q 003467 221 GSSD-----GYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG----- 284 (817)
Q Consensus 221 ~~~d-----g~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~s~~~dg~i~iwd~~~~----- 284 (817)
|+.+ +.+.||....+. ...++.. ..++..+|.+++|.|+- .|++++.|| |+||.++..
T Consensus 190 gs~e~a~~~~~~~Iye~~e~~rKw~kva~-----L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~ 263 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNENGRKWLKVAE-----LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE 263 (361)
T ss_pred EcccCCccccceEEEEecCCcceeeeehh-----cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh
Confidence 7765 478888765433 3333221 11799999999999975 589999999 999998731
Q ss_pred ---------------eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 285 ---------------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 285 ---------------~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+.+..+..|++.|..+.|+-.|..|.+.|.||.|++|...-.
T Consensus 264 ~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 264 EEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred hhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 234567789999999999999999999999999999987654
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=200.79 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=217.4
Q ss_pred CCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCCCCceeE
Q 003467 179 DGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI 256 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v 256 (817)
...+.+||+.++..+ ..+++- ...-.++..- .+.+++++.. ...|.+|.+.......... -..+.|
T Consensus 17 ~~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--------v~Pg~v 84 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSL---LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI--------VLPGPV 84 (476)
T ss_pred CcceeEEecCCCcee---EEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc--------ccccce
Confidence 345999999988776 333322 1111111111 2356666654 4579999987655444222 367789
Q ss_pred EEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCC
Q 003467 257 WSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 335 (817)
Q Consensus 257 ~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 335 (817)
.+++-+|+|. ++.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+-||.++++||.||.|.+|.+..--....+
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~--- 161 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND--- 161 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC---
Confidence 9999999995 455559999999999999999999999999999999999999999999999999998654321111
Q ss_pred CccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeC
Q 003467 336 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~ 415 (817)
..-.+...+..|+-.|+.+.+. +.+ ...+|++++.|.++++||+
T Consensus 162 -----~~~~p~~~f~~HtlsITDl~ig---------~Gg----------------------~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 162 -----HSVKPLHIFSDHTLSITDLQIG---------SGG----------------------TNARLYTASEDRTIKLWDL 205 (476)
T ss_pred -----CCccceeeeccCcceeEEEEec---------CCC----------------------ccceEEEecCCceEEEEEe
Confidence 1222567788999999999885 222 1248999999999999999
Q ss_pred CcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeE
Q 003467 416 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII 495 (817)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 495 (817)
..... +..+..+ ..+.
T Consensus 206 S~g~L--------------------------------------------------------------Llti~fp--~si~ 221 (476)
T KOG0646|consen 206 SLGVL--------------------------------------------------------------LLTITFP--SSIK 221 (476)
T ss_pred cccee--------------------------------------------------------------eEEEecC--Ccce
Confidence 76431 1112221 5678
Q ss_pred EEEecCCCcEEEEE-cCCceEEEEeecCCCCCc--------eEEEeeecCCcccc--ceeEEEEecCCCEEEEEecCCcE
Q 003467 496 CSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG--------EWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRI 564 (817)
Q Consensus 496 ~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~--------~~~~~~~~~~~~~~--~i~~~~fspd~~~l~~~~~dg~i 564 (817)
+++++|-++.+.+| .+|.|.+..+........ ....+...+.+|.. .|+|++++-||..|++|+.||.|
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCE
Confidence 88888888877775 568877776654221111 11112244566666 89999999999999999999999
Q ss_pred EEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccC
Q 003467 565 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 604 (817)
Q Consensus 565 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 604 (817)
.|||+.+.++++++.. ..++|+.+.+.|-
T Consensus 302 cvWdi~S~Q~iRtl~~-----------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 302 CVWDIYSKQCIRTLQT-----------SKGPVTNLQINPL 330 (476)
T ss_pred EEEecchHHHHHHHhh-----------hccccceeEeecc
Confidence 9999999999999986 5889999998664
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-22 Score=182.72 Aligned_cols=313 Identities=16% Similarity=0.210 Sum_probs=234.8
Q ss_pred ccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCce------EEEEEe-ecCCCCCCCceeEEEeEEecC--CeE
Q 003467 198 SLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE------IYRITV-GLGGLGSGPELCIWSLLSLRC--GTL 267 (817)
Q Consensus 198 ~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~------~~~~~~-~~~~~~~~~~~~v~~v~~~~~--~~l 267 (817)
..+.|.+.|.++...+ .|+++++|+.||.|.+||+++-.. +.+-.. -...+..+|...|.++.|-|- |.+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999976 689999999999999999975431 111110 112234578999999999874 489
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecC---CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEE
Q 003467 268 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 344 (817)
Q Consensus 268 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 344 (817)
.+++.|.++++||..+.+....|+. .+.|..-++||- ...+++|..|-+|++-|+.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----------------- 179 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----------------- 179 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----------------
Confidence 9999999999999999998888875 678888888884 3477888889999999999998
Q ss_pred EeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCc
Q 003467 345 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH 424 (817)
Q Consensus 345 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~ 424 (817)
+...+.+|...|.++.|+ |... -.|++|+.||.+++||++...
T Consensus 180 ~sH~LsGHr~~vlaV~Ws---------p~~e-----------------------~vLatgsaDg~irlWDiRras----- 222 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWS---------PSSE-----------------------WVLATGSADGAIRLWDIRRAS----- 222 (397)
T ss_pred ceeeeccccCceEEEEec---------cCce-----------------------eEEEecCCCceEEEEEeeccc-----
Confidence 788999999999999998 4443 289999999999999997522
Q ss_pred ccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc
Q 003467 425 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 504 (817)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 504 (817)
+.+.+.+...... .+..+....+...+..++++.||.
T Consensus 223 ------------------------------gcf~~lD~hn~k~-------------~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 223 ------------------------------GCFRVLDQHNTKR-------------PPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ------------------------------ceeEEeecccCcc-------------Cccccccccccceeeeeeecccch
Confidence 2222233222111 122334566678899999999999
Q ss_pred EEEE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcc
Q 003467 505 LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 583 (817)
Q Consensus 505 ~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 583 (817)
+++. +.+..+++|+...+....+-+ .+............+. +.+...++.--.++.+.++++-+++.++.+..
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~--g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--- 333 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREF--GPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--- 333 (397)
T ss_pred hhhhccCccceEEeecccCccccccc--ccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec---
Confidence 9887 799999999998744333211 0000000011111122 45666666666779999999999999999998
Q ss_pred cccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 584 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 584 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
|...|.+.++-|+=+.+.+++.|++|..|-.
T Consensus 334 --------h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 --------HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred --------ccceeeEEeecCchhhhhccccCCccccccc
Confidence 8899999999999999999999999999975
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.5e-25 Score=223.45 Aligned_cols=237 Identities=21% Similarity=0.270 Sum_probs=215.2
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
|-+-.|...|.|+..-..++.+++|+.|..+-+|.+...- +...+.+| ...|.+|.|+++..+ |+.|+.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~h-espIeSl~f~~~E~L------laagsa 90 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGH-ESPIESLTFDTSERL------LAAGSA 90 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeecc-CCcceeeecCcchhh------hccccc
Confidence 4556788999999987788999999999999999987544 46678888 899999999999987 999999
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
+|+|++||++.++.++++.+|...+..++|+|.+
T Consensus 91 sgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~---------------------------------------------- 124 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG---------------------------------------------- 124 (825)
T ss_pred CCceeeeehhhhhhhhhhhccccCcceeeeccce----------------------------------------------
Confidence 9999999999999999999999999999999998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.+.|.|+.|+.+++||+...+.. ..+.+|...|.++.|+|+|++++.|++|.+++|||+..|+.+..+.
T Consensus 125 ----~~~a~gStdtd~~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~---- 193 (825)
T KOG0267|consen 125 ----EFFASGSTDTDLKIWDIRKKGCS---HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK---- 193 (825)
T ss_pred ----EEeccccccccceehhhhccCce---eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc----
Confidence 47899999999999999855554 7788899999999999999999999999999999999999999998
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
.|+..+.++.|.|.. .+++|+.|+++++||+++.+.+.........|.+++|+|++..+++|..+
T Consensus 194 ----~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 194 ----SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ----cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 799999999999988 68999999999999999999999988888999999999999988887654
No 136
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-21 Score=199.59 Aligned_cols=482 Identities=13% Similarity=0.138 Sum_probs=302.1
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccC
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
.--..-.||+|+++ |+.... ..|.||...||.++..+..|..++..+.+.|.....
T Consensus 17 ~~~~~avfSnD~k~------l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~----------------- 72 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKF------LFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENA----------------- 72 (792)
T ss_pred ceecccccccCCcE------EEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccc-----------------
Confidence 33344569999998 776664 579999999999999999999999999999987542
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc---CCCE
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA---DGNM 217 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg~~ 217 (817)
.++.+++.+|.|++||...+..+ +++..+. ++..+.+.| +-..
T Consensus 73 ------------------------------~~~~~~sl~G~I~vwd~~~~~Ll---kt~~~~~-~v~~~~~~~~~a~~s~ 118 (792)
T KOG1963|consen 73 ------------------------------NYLIVCSLDGTIRVWDWSDGELL---KTFDNNL-PVHALVYKPAQADISA 118 (792)
T ss_pred ------------------------------eEEEEEecCccEEEecCCCcEEE---EEEecCC-ceeEEEechhHhCccc
Confidence 27889999999999999866555 3333221 222222211 1112
Q ss_pred EE-EeeCCCc-EEEEECCCCceEEEEEeec-----CCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEE-
Q 003467 218 LY-SGSSDGY-IRSWDAKLGYEIYRITVGL-----GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA- 289 (817)
Q Consensus 218 l~-s~~~dg~-i~vwd~~~g~~~~~~~~~~-----~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~- 289 (817)
++ ....|.. +............++.... ......+.. -..+.+.+.|.+.....+..+.+|+..++.....
T Consensus 119 ~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~ 197 (792)
T KOG1963|consen 119 NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSS 197 (792)
T ss_pred eeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeecc
Confidence 22 2222211 1111112222222221110 000111211 3567777888777777777899999987552111
Q ss_pred ---eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccC
Q 003467 290 ---HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 366 (817)
Q Consensus 290 ---~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 366 (817)
-..|.-.++|.+++|+++++++|..||+|.+|.--...... . ....+.-|...|.+++|+
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~------------~-t~t~lHWH~~~V~~L~fS---- 260 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS------------E-TCTLLHWHHDEVNSLSFS---- 260 (792)
T ss_pred chhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc------------c-cceEEEecccccceeEEe----
Confidence 12466678999999999999999999999999755411000 0 234567788899999998
Q ss_pred CCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCC
Q 003467 367 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 446 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 446 (817)
++|. +|+|||.++.+.+|.+.+.++.- .....+.+..+.++||
T Consensus 261 -----~~G~------------------------~LlSGG~E~VLv~Wq~~T~~kqf--------LPRLgs~I~~i~vS~d 303 (792)
T KOG1963|consen 261 -----SDGA------------------------YLLSGGREGVLVLWQLETGKKQF--------LPRLGSPILHIVVSPD 303 (792)
T ss_pred -----cCCc------------------------eEeecccceEEEEEeecCCCccc--------ccccCCeeEEEEEcCC
Confidence 7775 99999999999999998865211 1123456778889998
Q ss_pred eEE--EEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcE-EEEEcCCceEEEEeecCC
Q 003467 447 SLL--LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVKPSLFELKKGK 523 (817)
Q Consensus 447 ~~~--l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~~~~~i~l~~~~~~~ 523 (817)
+.+ ++..++.+.+.......... ...|-.... ...+...+.-.+.++++|--+. +..+..+.+.+|++.+ +
T Consensus 304 s~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~--~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t-d 377 (792)
T KOG1963|consen 304 SDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPT--PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT-D 377 (792)
T ss_pred CCeEEEEecCceEEEEeccchhhhh---hccCccCCC--ccccccccccceeEEEcCCCCceeecCCCceEEEEeccc-c
Confidence 765 45667788777764332211 011110000 0012222344667888884444 4447889999999987 3
Q ss_pred CCCceEEEeeecC-Cc---cccceeEEEEecCCCEEEEEec--------CC--cEEEEEccCCceeeeeccCcccccccC
Q 003467 524 VGQGEWIINKRQL-PR---KLQFAHSMIFSYDSSQLIIAGH--------DR--RIYVVDVSSSELLHTFTPCREEHDREI 589 (817)
Q Consensus 524 ~~~~~~~~~~~~~-~~---~~~~i~~~~fspd~~~l~~~~~--------dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~ 589 (817)
.+..-+.+..... .+ +...+++++++..|.+++++-. || .+++|-......-..+.. ...
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T------~I~ 451 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT------KIN 451 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE------EEe
Confidence 3332222222111 11 1226888888889999998732 22 477887754332222221 111
Q ss_pred CCCCCceeEEEEccC--CCEEEEEeCCCcEEEEECC------CcceEE---EEecCCCCCeEEEEecCCCCCeEEEEecC
Q 003467 590 QPSEPPITKMFTSSD--GQWLAAVNCFGDVYIFNLE------IQRQHW---FISRLEGASVTAAGFPPQNNNVLIITTSS 658 (817)
Q Consensus 590 ~~~~~~i~~l~~s~d--g~~la~~~~dg~i~vwd~~------~~~~~~---~~~~~~~~~i~~l~~sp~d~~~l~~~~~d 658 (817)
.+|...+...++.+. ...+++++.||.++||-+. .....| .+..+|..++++++|+. ||..| +++.|
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dGsll-a~s~~ 529 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DGSLL-AVSFD 529 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CCcEE-EEecC
Confidence 237777766666542 2389999999999999882 222222 23345678999999999 99655 55678
Q ss_pred CeEEEEEcCCC
Q 003467 659 NQVYVFDVEAK 669 (817)
Q Consensus 659 ~~i~vwd~~~~ 669 (817)
+.|.+||..+.
T Consensus 530 ~~Itiwd~~~~ 540 (792)
T KOG1963|consen 530 DTITIWDYDTK 540 (792)
T ss_pred CEEEEecCCCh
Confidence 89999999883
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.8e-22 Score=201.56 Aligned_cols=292 Identities=15% Similarity=0.145 Sum_probs=202.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEE-EEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML-YSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l-~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
..+++++.|+.|++||+.+++.+ ..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~---~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT---RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS------ 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE---EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC------
Confidence 47889999999999999876654 4444443 46789999999977 5667789999999999887766642
Q ss_pred CCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC-cEEEEEeecc
Q 003467 250 SGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCE 326 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg-~i~iw~~~~~ 326 (817)
+ ..+..++++|++ .+ +++..++.|++||+++++.+..+.. ...+.+++|+|+++.++++..++ .+..|+..+.
T Consensus 72 --~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 72 --G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred --C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 2 224568899998 34 4455689999999999888877753 34578899999999999887765 4666787654
Q ss_pred cCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE-EEec
Q 003467 327 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAG 405 (817)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~ 405 (817)
. ...... .......++++ |+++ .| +++.
T Consensus 148 ~-----------------~~~~~~-~~~~~~~~~~s---------~dg~------------------------~l~~~~~ 176 (300)
T TIGR03866 148 E-----------------IVDNVL-VDQRPRFAEFT---------ADGK------------------------ELWVSSE 176 (300)
T ss_pred e-----------------EEEEEE-cCCCccEEEEC---------CCCC------------------------EEEEEcC
Confidence 4 222111 12234555665 5554 44 3444
Q ss_pred CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeee
Q 003467 406 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 485 (817)
Q Consensus 406 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~ 485 (817)
.++.+.+||+.+.+... .
T Consensus 177 ~~~~v~i~d~~~~~~~~--------------------------------------------------------------~ 194 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIK--------------------------------------------------------------K 194 (300)
T ss_pred CCCEEEEEEcCcceeee--------------------------------------------------------------e
Confidence 57777777765422000 0
Q ss_pred eeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE-ecCCcE
Q 003467 486 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRI 564 (817)
Q Consensus 486 ~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~-~~dg~i 564 (817)
+. +.. ............++|+||+++++++ ..++.+
T Consensus 195 ~~-----------~~~--------------------------------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 195 IT-----------FEI--------------------------------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred ee-----------ecc--------------------------------cccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 00 000 0000000123467899999986554 456689
Q ss_pred EEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE-eCCCcEEEEECCCcceEEEEecCCCCCeEEEE
Q 003467 565 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV-NCFGDVYIFNLEIQRQHWFISRLEGASVTAAG 643 (817)
Q Consensus 565 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~ 643 (817)
.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+++++....++. +..++.++
T Consensus 232 ~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~ 297 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVV 297 (300)
T ss_pred EEEECCCCcEEEEEE------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeE
Confidence 999999888876654 34578999999999999886 4689999999999998888864 34678888
Q ss_pred ecC
Q 003467 644 FPP 646 (817)
Q Consensus 644 ~sp 646 (817)
|+|
T Consensus 298 ~~~ 300 (300)
T TIGR03866 298 VRP 300 (300)
T ss_pred eCC
Confidence 876
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=210.34 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=224.2
Q ss_pred CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC-ceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEE
Q 003467 200 PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQF 278 (817)
Q Consensus 200 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~i 278 (817)
..|....+.++|.|+|.+|++++.||.|++|+.... +....+. .+...|.+++...+ .|++++.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~s~-~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACYSN-HFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeeccc-ceEEeeccceEEE
Confidence 368888999999999999999999999999997665 2222232 25666777766433 8999999999999
Q ss_pred EeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 279 WDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 279 wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
|...+++.-..+...+.++.+++|+.+|++++.||.|-.|++.++.... ....+++|..+|.+
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----------------~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----------------QEKVLRGHDAPVLQ 143 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----------------hheeecccCCceee
Confidence 9998877654555556799999999999999999999999999998877 67789999999999
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeee
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 438 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (817)
+.+. |.+. +|++.+.||.|++|++.++........
T Consensus 144 l~~~---------p~~~------------------------fLAvss~dG~v~iw~~~~~~~~~tl~~------------ 178 (933)
T KOG1274|consen 144 LSYD---------PKGN------------------------FLAVSSCDGKVQIWDLQDGILSKTLTG------------ 178 (933)
T ss_pred eeEc---------CCCC------------------------EEEEEecCceEEEEEcccchhhhhccc------------
Confidence 9998 7775 999999999999999986431110000
Q ss_pred cceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEE
Q 003467 439 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 518 (817)
Q Consensus 439 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~ 518 (817)
+.++.
T Consensus 179 ------------------------------------------------------------v~k~n--------------- 183 (933)
T KOG1274|consen 179 ------------------------------------------------------------VDKDN--------------- 183 (933)
T ss_pred ------------------------------------------------------------CCccc---------------
Confidence 00000
Q ss_pred eecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeE
Q 003467 519 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK 598 (817)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 598 (817)
. ... ...+..++|+|+|..|++...|+.|++|+..+++....+.... +...++.
T Consensus 184 ------~--------~~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~---------~ss~~~~ 237 (933)
T KOG1274|consen 184 ------E--------FIL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL---------SSSKFSD 237 (933)
T ss_pred ------c--------ccc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc---------cccceEE
Confidence 0 000 1246788999999888889999999999999999988887632 3445999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEE
Q 003467 599 MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 664 (817)
Q Consensus 599 l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vw 664 (817)
+.|||+|+|||+++.||.|.|||.++... ......|++++|.| +.+.+-.....|...+|
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p-~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKP-NANAITLITALGTLGVS 297 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCC-CCCeeEEEeeccccccC
Confidence 99999999999999999999999998332 12236899999999 77766655555544443
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=3.7e-23 Score=197.76 Aligned_cols=264 Identities=14% Similarity=0.166 Sum_probs=205.3
Q ss_pred CCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe----------EEEEEeecCceEEEEeeecCCCcccee
Q 003467 57 GDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK----------QKIVLQSIDFSIWQMAVAPSNSSLMHA 126 (817)
Q Consensus 57 g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----------~~~~~~~~~~~i~~~~~s~~~~~~~~~ 126 (817)
..|.+.|..+..-|.... .+|+.+..+.|.|||..+.. +..++.+|...-+.++|++...
T Consensus 121 i~h~gEVnRaRymPQnp~-----iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~----- 190 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPN-----IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE----- 190 (422)
T ss_pred ccCCccchhhhhCCCCCc-----EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-----
Confidence 345778888888887764 46677888999999986422 2247888888777888888764
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc----eeEeeccCCc
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE----LIYHRSLPRV 202 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~h 202 (817)
.+|++++.|+.|++||+..... +.....+.+|
T Consensus 191 --------------------------------------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h 226 (422)
T KOG0264|consen 191 --------------------------------------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH 226 (422)
T ss_pred --------------------------------------------eeEeeccCCCcEEEEeccccccCCccccceEEeecC
Confidence 2999999999999999984332 4455678899
Q ss_pred cceEEEEEEccCC-CEEEEeeCCCcEEEEECCCC--ceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEE
Q 003467 203 SGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQ 277 (817)
Q Consensus 203 ~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g--~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~ 277 (817)
+..|..++|++-. ..+++++.|+.+.|||++++ +...... .|...|++++|.|-+ .||+|+.|++|.
T Consensus 227 ~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~ 298 (422)
T KOG0264|consen 227 EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--------AHSAEVNCVAFNPFNEFILATGSADKTVA 298 (422)
T ss_pred CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--------ccCCceeEEEeCCCCCceEEeccCCCcEE
Confidence 9999999999854 57788999999999999963 3333333 799999999999966 799999999999
Q ss_pred EEeCCC-CeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 278 FWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 278 iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
+||+++ .+.+.++.+|...|.++.|+|.. +.|+++|.|+.+.+||+..-..... ........-.++....+|+..
T Consensus 299 LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 299 LWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred EeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC---hhhhccCCcceeEEecCcccc
Confidence 999997 45689999999999999999965 5677888999999999976432110 000011112366788899999
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
|..+.|. |... -.++|.+.|+.+.+|....
T Consensus 376 V~DfsWn---------p~eP-----------------------W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 376 VSDFSWN---------PNEP-----------------------WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccCC---------CCCC-----------------------eEEEEecCCceEEEeeccc
Confidence 9999887 4442 3899999999999999874
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=188.21 Aligned_cols=286 Identities=16% Similarity=0.163 Sum_probs=210.4
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
-.|+.||+.|.+||+|..||.|.|||+.+.. ....+.+| ..+|++++||+||++ |+++|.|..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH-~~pi~sl~WS~dgr~------LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAH-VRPITSLCWSRDGRK------LLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhcc-ccceeEEEecCCCCE------eeeecCCceeEEEec
Confidence 7899999999999999999999999999987 35566666 899999999999998 999999999999999
Q ss_pred CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc-cccccccccCCEEE
Q 003467 96 YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD-ELHEQSVVEDRRVA 174 (817)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 174 (817)
..|.+++.+. ...+||...|+|...+.+.++.-.......-+.+. .-..+....++.... ......-..|+++.
T Consensus 95 ~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 95 LKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred cCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCCCccccccccccccccCCCCEEE
Confidence 9999998887 67999999999999887776654444333333321 011111111111111 11111224578999
Q ss_pred EEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEEEEeeCCCcEEEEECCCC-------ceE--EEEEee
Q 003467 175 LACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-------YEI--YRITVG 244 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-------~~~--~~~~~~ 244 (817)
+|...|.+.+++..+.+.. ..++-.. ..|..+-++..|++|+.-+.|..||.|+++.- +.. +++..-
T Consensus 170 tGtsKGkllv~~a~t~e~v---as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECV---ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EecCcceEEEEecchheee---eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 9999999999999876554 3443333 68999999999999999999999999997621 100 111100
Q ss_pred cCCCCCCCceeEEEeEEecCCeEEEEc--CCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 245 LGGLGSGPELCIWSLLSLRCGTLVSAD--STGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
-....-.+++|+.+|.+++++ ....++||.-..|.+++.+.+.. .....+.|.|-...+++- ..|.+++|
T Consensus 247 ------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw 319 (405)
T KOG1273|consen 247 ------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIW 319 (405)
T ss_pred ------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEE
Confidence 112233467899999433333 34569999999999999999877 557789999987777776 77899999
Q ss_pred Eeeccc
Q 003467 322 KASCES 327 (817)
Q Consensus 322 ~~~~~~ 327 (817)
......
T Consensus 320 ~~~~~e 325 (405)
T KOG1273|consen 320 AVVQVE 325 (405)
T ss_pred Eeeccc
Confidence 887644
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=193.50 Aligned_cols=288 Identities=15% Similarity=0.224 Sum_probs=228.4
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
.++|+++.|+|....|.+|+.||+++||.+...... .++.++-. ..+|.+.+|.|+|. .++++++.......
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~-~fPi~~a~f~p~G~-----~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLE-KFPIQKAEFAPNGH-----SVIFTSGRRKYLYS 284 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeec-cCccceeeecCCCc-----eEEEecccceEEEE
Confidence 379999999999999999999999999999865432 23344333 57999999999997 25999999999999
Q ss_pred EECCCCeEEEE--EeecC-ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 93 WDLYDLKQKIV--LQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 93 wd~~~~~~~~~--~~~~~-~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
||+.+.+..+. ..++. ..+....+++++
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~------------------------------------------------- 315 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDS------------------------------------------------- 315 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCC-------------------------------------------------
Confidence 99998875432 22222 356677888888
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
++||..+..|.|.+....+++.+ .++ ...+.|..++|+.|++.|++++.+|.|.+||++...+++++...
T Consensus 316 -~fia~~G~~G~I~lLhakT~eli---~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~----- 385 (514)
T KOG2055|consen 316 -NFIAIAGNNGHIHLLHAKTKELI---TSF-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD----- 385 (514)
T ss_pred -CeEEEcccCceEEeehhhhhhhh---hee-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-----
Confidence 59999999999999998877665 333 34688999999999999999999999999999999999998742
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC------CeEEEEeecCccCeeEEEEecCCCEEEEEcc--CCcEEE
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGS--DGQVIL 320 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~--dg~i~i 320 (817)
....-.+++.++++ +|++|+..|.|.|||.++ -+++.++..-...|+.|.|++|++.|+.++. +..+++
T Consensus 386 --G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 386 --GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred --CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 23344567778888 899999999999999765 3556667667789999999999999988765 678999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
-.+.+... ...|- .....-+.|+|++|+ |.+. +
T Consensus 464 VHvPS~TV-----------FsNfP---~~n~~vg~vtc~aFS---------P~sG------------------------~ 496 (514)
T KOG2055|consen 464 VHVPSCTV-----------FSNFP---TSNTKVGHVTCMAFS---------PNSG------------------------Y 496 (514)
T ss_pred Eeccceee-----------eccCC---CCCCcccceEEEEec---------CCCc------------------------e
Confidence 88877652 11121 112334568999998 7664 9
Q ss_pred EEEecCCCeEEEEeCC
Q 003467 401 LISAGDDTKLFAYCAN 416 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~ 416 (817)
|+.|..+|.+.+|.+.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 9999999999999874
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.5e-23 Score=200.53 Aligned_cols=292 Identities=17% Similarity=0.194 Sum_probs=223.8
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.+.+|.+.|+||...|.|.+||+|+.||+|+||.+.+|. |+.++.- .+.|.||+|+|.+.. ..||++-..
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR----cvr~~~~--d~~I~~vaw~P~~~~----~vLAvA~~~ 464 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR----CVRTVQF--DSEIRSVAWNPLSDL----CVLAVAVGE 464 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce----EEEEEee--cceeEEEEecCCCCc----eeEEEEecC
Confidence 358999999999999999999999999999999999998 6777665 468999999999876 556555444
Q ss_pred CeEEEEECCCCeE-------------------------------------EEEEeecCceEEEEeeecCCCccceeeccC
Q 003467 88 GSVSEWDLYDLKQ-------------------------------------KIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 88 ~~i~vwd~~~~~~-------------------------------------~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
. +.+-+..-|.. ++..-.|...|.++.|+-.|
T Consensus 465 ~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG---------- 533 (733)
T KOG0650|consen 465 C-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG---------- 533 (733)
T ss_pred c-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC----------
Confidence 3 44444322211 12223355566666666666
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC---CCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
.+|++.+. ...|.|..+...... ..|....+.|.
T Consensus 534 ----------------------------------------DYlatV~~~~~~~~VliHQLSK~~sQ---~PF~kskG~vq 570 (733)
T KOG0650|consen 534 ----------------------------------------DYLATVMPDSGNKSVLIHQLSKRKSQ---SPFRKSKGLVQ 570 (733)
T ss_pred ----------------------------------------ceEEEeccCCCcceEEEEeccccccc---CchhhcCCcee
Confidence 46776654 457888888744333 55666778899
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC-e
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-T 285 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~-~ 285 (817)
++.|+|...+|++++.. .|++||+.....+.++. .....|..++.+|.| .|+.|+.|+.+..+|+.-+ +
T Consensus 571 ~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 571 RVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred EEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 99999999999998875 99999999888877776 577889999999999 8999999999999999854 5
Q ss_pred EEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc----cceeEe
Q 003467 286 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD----VRALTV 361 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~ 361 (817)
..+++..|...++.++|++.-..+++|+.||++.+|.-.--.-. -...-.+.+..+++|... |....|
T Consensus 642 Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--------~qnpliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 642 PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL--------LQNPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh--------hcCCceEeeeeccCceeecccceEeecc
Confidence 67889999999999999999999999999999999864321100 001224467788888665 555556
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 413 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~ 413 (817)
. |. .+.|+++|.||+|++|
T Consensus 714 H---------P~------------------------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 H---------PR------------------------QPWLFSAGADGTIRLF 732 (733)
T ss_pred c---------CC------------------------CceEEecCCCceEEee
Confidence 4 33 3599999999999998
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-24 Score=216.32 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=214.1
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVL 104 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 104 (817)
+.+++.....-.++|||.... ..| ...|.++..-..++. +++|+.|..+-+|.......+..+
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~----------~~h-saav~~lk~~~s~r~------~~~Gg~~~k~~L~~i~kp~~i~S~ 66 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF----------VAH-SAAVGCLKIRKSSRS------LVTGGEDEKVNLWAIGKPNAITSL 66 (825)
T ss_pred ccccceeeeeeccccccchhh----------hhh-hhhhceeeeecccee------eccCCCceeeccccccCCchhhee
Confidence 344555555566788886432 122 567778887666666 999999999999999988888899
Q ss_pred eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEE
Q 003467 105 QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRI 184 (817)
Q Consensus 105 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 184 (817)
.+|..+|.++.|+++. .+|++|..+|+|++
T Consensus 67 ~~hespIeSl~f~~~E--------------------------------------------------~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSE--------------------------------------------------RLLAAGSASGTIKV 96 (825)
T ss_pred eccCCcceeeecCcch--------------------------------------------------hhhcccccCCceee
Confidence 9999999999999987 48999999999999
Q ss_pred EEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC
Q 003467 185 YRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC 264 (817)
Q Consensus 185 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 264 (817)
||++....+ ++|.+|...+.+|.|+|-+.+.++|+.|+.+++||.+...+...+. +|...|..+.|+|+
T Consensus 97 wDleeAk~v---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 97 WDLEEAKIV---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------SHTRVVDVLRLSPD 165 (825)
T ss_pred eehhhhhhh---hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec--------CCcceeEEEeecCC
Confidence 999977766 8999999999999999999999999999999999999877888887 79999999999999
Q ss_pred C-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 265 G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 265 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
| .+++++.|..++|||+..|+.+..|+.|.+.+..+.|+|..-.+++|+.|+++++||+++..
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe---------------- 229 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE---------------- 229 (825)
T ss_pred CceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE----------------
Confidence 9 78899999999999999999999999999999999999999889999999999999999876
Q ss_pred EEeeccccCCCccceeEee
Q 003467 344 IYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~ 362 (817)
.+........+|++++|.
T Consensus 230 -~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 230 -VISSGKPETDGVRSLAFN 247 (825)
T ss_pred -EeeccCCccCCceeeeec
Confidence 677777778999999998
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.4e-21 Score=198.31 Aligned_cols=271 Identities=17% Similarity=0.156 Sum_probs=200.0
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE-EEeeCCCeEEEEECCCCeEEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL-FSSSIDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~ 103 (817)
+..+++++.|+.|.+||+.+++ +...+.++ ..+.+++|+|+++. + ++++.++.|.+||..+++....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~----~~~~~~~~--~~~~~l~~~~dg~~------l~~~~~~~~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE----VTRTFPVG--QRPRGITLSKDGKL------LYVCASDSDTIQVIDLATGEVIGT 68 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc----eEEEEECC--CCCCceEECCCCCE------EEEEECCCCeEEEEECCCCcEEEe
Confidence 3578899999999999998877 45666654 34678999999976 6 5667889999999999988877
Q ss_pred EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE-EEeCCCcE
Q 003467 104 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA-LACDDGCV 182 (817)
Q Consensus 104 ~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i 182 (817)
+..+.. +..++|+|++. .++ ++..++.|
T Consensus 69 ~~~~~~-~~~~~~~~~g~--------------------------------------------------~l~~~~~~~~~l 97 (300)
T TIGR03866 69 LPSGPD-PELFALHPNGK--------------------------------------------------ILYIANEDDNLV 97 (300)
T ss_pred ccCCCC-ccEEEECCCCC--------------------------------------------------EEEEEcCCCCeE
Confidence 765443 56789999883 454 45568999
Q ss_pred EEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEE
Q 003467 183 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 261 (817)
Q Consensus 183 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (817)
++||+.+...+ ..+. +...+.+++|+|+|++++++..++ .+.+||..+++....+.. ......++|
T Consensus 98 ~~~d~~~~~~~---~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~ 164 (300)
T TIGR03866 98 TVIDIETRKVL---AEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---------DQRPRFAEF 164 (300)
T ss_pred EEEECCCCeEE---eEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---------CCCccEEEE
Confidence 99999865443 3332 223467899999999999988775 467789988877665542 223467899
Q ss_pred ecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCcc-------CeeEEEEecCCCEEEEE-ccCCcEEEEEeecccCCCC
Q 003467 262 LRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKG-------DVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPN 331 (817)
Q Consensus 262 ~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~ 331 (817)
++++ .+ +++..++.|.+||+++++.+..+..+.. ....++|+|++++++++ +.++.+.+||..+.+
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---- 240 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---- 240 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----
Confidence 9999 45 4555689999999999988776653321 23468899999987654 456789999987665
Q ss_pred CCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe-cCCCeE
Q 003467 332 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKL 410 (817)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i 410 (817)
....+ .+.+.+.+++|+ |+++ .|+++ +.++.|
T Consensus 241 -------------~~~~~-~~~~~~~~~~~~---------~~g~------------------------~l~~~~~~~~~i 273 (300)
T TIGR03866 241 -------------VLDYL-LVGQRVWQLAFT---------PDEK------------------------YLLTTNGVSNDV 273 (300)
T ss_pred -------------EEEEE-EeCCCcceEEEC---------CCCC------------------------EEEEEcCCCCeE
Confidence 33322 234568889887 7876 77765 579999
Q ss_pred EEEeCCcccccC
Q 003467 411 FAYCANEFTKFS 422 (817)
Q Consensus 411 ~~~~~~~~~~~~ 422 (817)
.+||+.+.....
T Consensus 274 ~v~d~~~~~~~~ 285 (300)
T TIGR03866 274 SVIDVAALKVIK 285 (300)
T ss_pred EEEECCCCcEEE
Confidence 999999866433
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.3e-22 Score=195.99 Aligned_cols=317 Identities=17% Similarity=0.176 Sum_probs=230.4
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCC
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG 274 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg 274 (817)
..+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|+++.++. ....|.+++|.|.+ -+++.....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------ecceeEEEEecCCCCceeEEEEecC
Confidence 4567999999999999999999999999999999999999999997 45689999999988 344445455
Q ss_pred cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE----ccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccc
Q 003467 275 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST----GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
.+.|-+..-|..+..-. ....|+++ ..++.+..|.-........ -+...-
T Consensus 465 ~~~ivnp~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-------------~v~~~I 518 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELEK-------------GVCIVI 518 (733)
T ss_pred ceEEeCccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhcc-------------ceEEEE
Confidence 57777766553322111 01112211 2366788887664331100 134555
Q ss_pred cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC---eEEEEeCCcccccCCcccC
Q 003467 351 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAYCANEFTKFSPHEIC 427 (817)
Q Consensus 351 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~~~~~~~~~~~~~~~~~ 427 (817)
.|...|+.+.|. ..| .+|++...++ .|.++++.......++
T Consensus 519 ~~~k~i~~vtWH---------rkG------------------------DYlatV~~~~~~~~VliHQLSK~~sQ~PF--- 562 (733)
T KOG0650|consen 519 KHPKSIRQVTWH---------RKG------------------------DYLATVMPDSGNKSVLIHQLSKRKSQSPF--- 562 (733)
T ss_pred ecCCccceeeee---------cCC------------------------ceEEEeccCCCcceEEEEecccccccCch---
Confidence 677889999886 444 4888866543 5666666542211110
Q ss_pred CCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEE
Q 003467 428 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 507 (817)
Q Consensus 428 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la 507 (817)
.+....+.++.|+|...++.
T Consensus 563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf 582 (733)
T KOG0650|consen 563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF 582 (733)
T ss_pred ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence 11125688889999999999
Q ss_pred EEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC-CceeeeeccCccccc
Q 003467 508 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHD 586 (817)
Q Consensus 508 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~ 586 (817)
+++...|++|++.. ...+ .++......|..|+.+|.|.-|++++.|+.+..||+.- .+..+++..
T Consensus 583 VaTq~~vRiYdL~k---qelv-----KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~------ 648 (733)
T KOG0650|consen 583 VATQRSVRIYDLSK---QELV-----KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL------ 648 (733)
T ss_pred EEeccceEEEehhH---HHHH-----HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh------
Confidence 99999999999976 2221 33444455799999999999999999999999999974 467777777
Q ss_pred ccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC------CCcceEEEEecC--CC----CCeEEEEecCCCCCeEEE
Q 003467 587 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL------EIQRQHWFISRL--EG----ASVTAAGFPPQNNNVLII 654 (817)
Q Consensus 587 ~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~------~~~~~~~~~~~~--~~----~~i~~l~~sp~d~~~l~~ 654 (817)
|...+++++|++.-.++|+|+.||++.||.- -.......+... |. ..|..+.|+| ..-+|++
T Consensus 649 -----H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfs 722 (733)
T KOG0650|consen 649 -----HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFS 722 (733)
T ss_pred -----hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEe
Confidence 8999999999999999999999999998843 222222223222 22 3478889999 8899999
Q ss_pred EecCCeEEEE
Q 003467 655 TTSSNQVYVF 664 (817)
Q Consensus 655 ~~~d~~i~vw 664 (817)
++.||+|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999998
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-23 Score=212.00 Aligned_cols=245 Identities=19% Similarity=0.296 Sum_probs=198.4
Q ss_pred EEEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 17 VALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 17 ~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
..++|+. +.++|||+..+|.|.+||+...... .+...+..| +..|.++.|++... ..|+|||.||+|++||+
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn-k~l~~f~EH-~Rs~~~ldfh~tep-----~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN-KLLTVFNEH-ERSANKLDFHSTEP-----NILISGSQDGTVKCWDL 163 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccc-hhhhHhhhh-ccceeeeeeccCCc-----cEEEecCCCceEEEEee
Confidence 3344543 5689999999999999999862110 134456666 89999999998765 46999999999999999
Q ss_pred CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 96 YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
...+...++.+....|..+.|+|... ..+++
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~-------------------------------------------------~~F~s 194 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYG-------------------------------------------------NKFAS 194 (839)
T ss_pred ecccccccccccchhhhceeeccCCC-------------------------------------------------ceEEE
Confidence 99998999999999999999999763 38999
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCcee
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 255 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 255 (817)
+.+.|.+++||++..... ...+..|.+.|.|+.|+|++.+||||+.|++|+|||+.+++....... ....+
T Consensus 195 ~~dsG~lqlWDlRqp~r~--~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTiap 265 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRC--EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTIAP 265 (839)
T ss_pred ecCCceEEEeeccCchhH--HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eecce
Confidence 999999999999854443 377889999999999999999999999999999999987765555553 36678
Q ss_pred EEEeEEecCC--eEEEEcC--CCcEEEEeCCC-CeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeecc
Q 003467 256 IWSLLSLRCG--TLVSADS--TGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 256 v~~v~~~~~~--~l~s~~~--dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
|..+.|-|+. .|++++. |-.|+|||++. .-+..++..|+..++.++|.. |-..+.+++.||+|..-.+...
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 9999999988 5766654 67799999984 345678889999999999975 4456788999998876554443
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=8.4e-22 Score=188.01 Aligned_cols=262 Identities=15% Similarity=0.156 Sum_probs=197.8
Q ss_pred CCceeeeeeccCCCceEEEEECCCC--CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCC
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADD--SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPG 78 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~ 78 (817)
|++..+.-+..|+..|++++|+|.. +++|+|..-|+|-+||+.+.++...-...+..| ..+|.+|.|+|.+.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~----- 247 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANT----- 247 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCCh-----
Confidence 3445566678899999999999964 589999999999999996433332234455555 78999999999875
Q ss_pred ceEEEeeCCCeEEEEECCCCeEE--EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQK--IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
.++++.|.||+|+.-|++++... ..++.....+..+.|+.+.
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~------------------------------------ 291 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES------------------------------------ 291 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC------------------------------------
Confidence 46999999999999999876533 3333344555666776665
Q ss_pred CCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCC
Q 003467 157 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g 235 (817)
+.++.+..=|...+||..+++.-. ..+.-|+..|.+|+++|-.. +|+|++.|++.+|||++.-
T Consensus 292 --------------~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 292 --------------RSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred --------------ccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 467777777899999998655421 55667888999999999754 6889999999999999864
Q ss_pred ceEEE--EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC----CCeEEEEeecCc----c--CeeEEEE
Q 003467 236 YEIYR--ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR----HGTLLQAHSFHK----G--DVNALAA 302 (817)
Q Consensus 236 ~~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~----~~~~~~~~~~h~----~--~v~~l~~ 302 (817)
..... +.. ..|...|.+..|+|.+ .|++.+.|..|+|||.. ...+...+. |. . .....+|
T Consensus 356 ~~K~sp~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 356 RGKASPFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAW 428 (498)
T ss_pred cCCCCcceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhhee
Confidence 33322 211 1699999999999988 89999999999999984 222222322 21 1 2345689
Q ss_pred ecCCCEEEEEccCCcEEEEEeeccc
Q 003467 303 APSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|+.+++++|-.-..|-+++-..++
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCCE
Confidence 9999999999988899999988876
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=6.1e-22 Score=196.57 Aligned_cols=297 Identities=20% Similarity=0.193 Sum_probs=213.1
Q ss_pred EEECC---CCCeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEE
Q 003467 19 LATSA---DDSQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWD 94 (817)
Q Consensus 19 la~sp---dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd 94 (817)
..|++ ....||++.++|.|.++|....... ..+.....-.|...|-.++|.| |+ .+|++++.|.+++.||
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-----~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-----SLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-----eeEEEccCCceeeeee
Confidence 55654 3568999999999999998754321 1122222333489999999999 54 3599999999999999
Q ss_pred CCCCeEEEE--EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 95 LYDLKQKIV--LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 95 ~~~~~~~~~--~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
+.++++... +.+|.+.|.+++|.|.... .
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~-------------------------------------------------v 159 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPA-------------------------------------------------V 159 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCc-------------------------------------------------c
Confidence 999998866 8899999999999998853 8
Q ss_pred EEEEeCCCcEEEEEecCCC--cee----------------------EeeccCCccceEEE---EEEccCCCEEEEeeC-C
Q 003467 173 VALACDDGCVRIYRITDSD--ELI----------------------YHRSLPRVSGRVLS---VTWSADGNMLYSGSS-D 224 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~--~~~----------------------~~~~~~~h~~~v~~---v~~s~dg~~l~s~~~-d 224 (817)
+++|+.||.|.|||+.... .+. -.+.-..+...|.+ +.+..|...||+++. |
T Consensus 160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D 239 (720)
T KOG0321|consen 160 FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD 239 (720)
T ss_pred eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC
Confidence 9999999999999997332 000 00111223444555 666678899999888 9
Q ss_pred CcEEEEECCCCceEEEEEeecCCCC---CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC--eEEEEeecCccC--
Q 003467 225 GYIRSWDAKLGYEIYRITVGLGGLG---SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG--TLLQAHSFHKGD-- 296 (817)
Q Consensus 225 g~i~vwd~~~g~~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~-- 296 (817)
+.|+|||+++.....+......... ......+.++.....| +|.+.+.|+.|.+|++.+- ..+..+.++...
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf 319 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF 319 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccccee
Confidence 9999999987665544331110000 1224456666666666 6766777999999999853 234444443221
Q ss_pred eeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccc
Q 003467 297 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 376 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 376 (817)
-..-..+||+.+|++|+.|...++|.+..... ....+.+|+-.|.++++.+ ++..
T Consensus 320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~----------------~~~~l~Ght~eVt~V~w~p-------S~~t-- 374 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA----------------PPALLLGHTREVTTVRWLP-------SATT-- 374 (720)
T ss_pred eeeeecCCCCceEeccCCCcceeeeeecCccC----------------ChhhhhCcceEEEEEeecc-------ccCC--
Confidence 12235689999999999999999999988764 4567899999999999972 1222
Q ss_pred ccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 377 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
-+++++.|..+++|++...
T Consensus 375 -----------------------~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 375 -----------------------PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------------------CceeeccCcceEEEeccCc
Confidence 5777899999999999653
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=204.58 Aligned_cols=290 Identities=17% Similarity=0.230 Sum_probs=224.8
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC--CCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP--KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~--~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
..+++|+..++-..|++++. ..+.||.+........+.....+.. -..+..|+|..... ++||+++..|.|.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~-----NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS-----NLIATCSTNGVIS 113 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchh-----hhheeecCCCcEE
Confidence 56788999999999999986 5788888775443222333332221 13456777874322 4599999999999
Q ss_pred EEECCC---CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 92 EWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 92 vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
+||+.. .+.+..+..|...+.++.|++..++
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~---------------------------------------------- 147 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN---------------------------------------------- 147 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCcc----------------------------------------------
Confidence 999987 5667788999999999999998753
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCC-ceEEEEEeecC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLG 246 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~~ 246 (817)
+|++|+.||+|++||+...... .++.+....|..|.|+|. +..++++...|.+.+||++.. ++...+.
T Consensus 148 ---iliSGSQDg~vK~~DlR~~~S~---~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---- 217 (839)
T KOG0269|consen 148 ---ILISGSQDGTVKCWDLRSKKSK---STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---- 217 (839)
T ss_pred ---EEEecCCCceEEEEeeeccccc---ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh----
Confidence 8999999999999999966665 677778889999999984 668889999999999999854 4445555
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec-CccCeeEEEEecCCCE-EEEEc--cCCcEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNR-VFSTG--SDGQVILY 321 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~-l~~~~--~dg~i~iw 321 (817)
.|.++|.++.|+|++ .|++|+.|++|+|||..+++.-....- ..++|.++.|-|+..+ |++++ .|-.|++|
T Consensus 218 ----AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 218 ----AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred ----cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEE
Confidence 799999999999988 799999999999999987554332222 2578999999998755 55543 38899999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
|+...-. +..++..|..-+..++|. .+ +...|
T Consensus 294 DvrRPYI----------------P~~t~~eH~~~vt~i~W~----------~~----------------------d~~~l 325 (839)
T KOG0269|consen 294 DVRRPYI----------------PYATFLEHTDSVTGIAWD----------SG----------------------DRINL 325 (839)
T ss_pred eeccccc----------------cceeeeccCccccceecc----------CC----------------------Cceee
Confidence 9987643 567888999999999984 22 23489
Q ss_pred EEecCCCeEEEEeCCc
Q 003467 402 ISAGDDTKLFAYCANE 417 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~ 417 (817)
.+++.||.+..-..++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 9999999887655543
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=7.4e-20 Score=182.27 Aligned_cols=479 Identities=13% Similarity=0.151 Sum_probs=288.5
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
.|..++|-|||.. |+.+..+ .+.+||.+.|..++++++|...|++++|+.||
T Consensus 14 ci~d~afkPDGsq------L~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dG--------------------- 65 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQ------LILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG--------------------- 65 (1081)
T ss_pred chheeEECCCCce------EEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCC---------------------
Confidence 8999999999987 6666544 69999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG 221 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 221 (817)
+++|+|+.|..|.+|+..-.+.+.+ .|...|.|+.|+|-...|+++
T Consensus 66 -----------------------------krFASG~aDK~VI~W~~klEG~LkY-----SH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 66 -----------------------------KRFASGSADKSVIIWTSKLEGILKY-----SHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred -----------------------------ceeccCCCceeEEEecccccceeee-----ccCCeeeEeecCchHHHhhhc
Confidence 5999999999999998764333332 589999999999999999998
Q ss_pred eCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeE---EEEeecCccCe
Q 003467 222 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDV 297 (817)
Q Consensus 222 ~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v 297 (817)
+-. ..-+|..... .+.+. .....+.+++|..|| .++.|-.+|+|.+-+.. |+. +....+.+.+|
T Consensus 112 sLs-dFglWS~~qK-~V~K~---------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQK-SVSKH---------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPI 179 (1081)
T ss_pred chh-hccccChhhh-hHHhh---------hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCc
Confidence 865 7788986533 22222 245678899999999 68999999999998754 433 33444577899
Q ss_pred eEEEEecCC-----CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCC
Q 003467 298 NALAAAPSH-----NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 372 (817)
Q Consensus 298 ~~l~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 372 (817)
.+++|+|.. ..+++.....++.++.+.... +..-+.-.-+-.|+... +
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------------------Igk~r~L~FdP~CisYf---------~ 232 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------------------IGKDRALNFDPCCISYF---------T 232 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEeccee------------------ecccccCCCCchhheec---------c
Confidence 999999964 467788888888888876643 22222233344566655 6
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
+|. ++..||.|+.+.+|...... ..........++.++..|+++.++.
T Consensus 233 NGE------------------------y~LiGGsdk~L~~fTR~Gvr--------LGTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 233 NGE------------------------YILLGGSDKQLSLFTRDGVR--------LGTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred CCc------------------------EEEEccCCCceEEEeecCeE--------EeeccccceeEEEEEEccCCceEEE
Confidence 664 99999999999998654311 1111223456666666666665553
Q ss_pred eC--CeEEEEEecccCCcccCCCCCCCCcc-------c-----eeeeeeecCCCCeEEEE----ecCCCcEEEEEcCCce
Q 003467 453 YS--CRLDILSVRLENNVESRSSSGGHAST-------S-----LLVQVKSKASRKIICST----ISNSGMLFAYSDHVKP 514 (817)
Q Consensus 453 ~~--~~i~i~~~~~~~~~~~~~~~~g~~~~-------~-----~~~~~~~~~~~~i~~~~----~s~~g~~la~~~~~~i 514 (817)
+. +++..+++. ...-|.-. + .+..+......+|.|-. ++--...||+--..+|
T Consensus 281 GCqDGTiACyNl~---------fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki 351 (1081)
T KOG1538|consen 281 GCQDGTIACYNLI---------FSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKI 351 (1081)
T ss_pred EEccCeeehhhhH---------HhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceE
Confidence 32 233333321 00000000 0 00001111111122110 0011123455444556
Q ss_pred EEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCC
Q 003467 515 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 594 (817)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (817)
.+|.+...+....-+.++. ++.... ...-+. -.++.++.+ .+..+.-+|+. |-..+...- .+
T Consensus 352 ~iYel~se~~~~mhY~v~e-kI~kkf-~cSLlV--Vc~~HiVlC-qekrLqClDF~-Gvk~ReW~M------------~S 413 (1081)
T KOG1538|consen 352 LIYELYSEDLSDMHYRVKE-KIIKKF-ECSLLV--VCANHIVLC-QEKRLQCLDFS-GVKEREWQM------------ES 413 (1081)
T ss_pred EEEeccccccccchhHHHH-HHHhhc-cceEEE--EEcCeEEEE-cccceeeeccc-chhhhhhhH------------HH
Confidence 6666654222111111110 000000 000111 123344433 45566677764 221111110 11
Q ss_pred ceeEEEE--cc-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 595 PITKMFT--SS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 595 ~i~~l~~--s~-dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
-|.-+.+ .| ...-|+.|-.+|.|.-.=+++.-...... ....|.++..+. ..+.||+....++..++|+.++++
T Consensus 414 ~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~--~~tAvrClDINA-~R~kLAvVDD~~~c~v~DI~t~el 490 (1081)
T KOG1538|consen 414 LIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK--QATAVRCLDINA-SRKKLAVVDDNDTCLVYDIDTKEL 490 (1081)
T ss_pred HHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec--ccceeEEeeccC-CcceEEEEccCCeEEEEEccCCce
Confidence 1111111 12 23367788888876533344433322222 225899999999 889999999999999999999986
Q ss_pred ccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEc
Q 003467 672 GEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 720 (817)
Q Consensus 672 ~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~ 720 (817)
+. ..-.+.+++|+.. .+.++.+....+-.+..
T Consensus 491 --------------L~-QEpg~nSV~wNT~--~E~MlcfT~~g~L~VR~ 522 (1081)
T KOG1538|consen 491 --------------LF-QEPGANSVAWNTQ--CEDMLCFTGGGYLNVRA 522 (1081)
T ss_pred --------------Ee-ecCCCceEEeecc--ccceEEEecCCceEEEe
Confidence 22 1236789999985 34454444444333443
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.4e-21 Score=173.53 Aligned_cols=270 Identities=17% Similarity=0.203 Sum_probs=197.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+||+||.||.|.|||+.+...- +.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++++.
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-------- 104 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-------- 104 (405)
T ss_pred ceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--------
Confidence 49999999999999999876644 8899999999999999999999999999999999999999999997
Q ss_pred CCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEe-ec-Cc----cCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 251 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAH-SF-HK----GDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~-~~-h~----~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
...+||.+.|+|-. +.++.-.+..-.+-++... .+++ .. .. ..-.+..|.+.|+++++|...|.+.+++
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 77899999999866 4444444444445554432 1221 11 11 1122346889999999999999999999
Q ss_pred eecccCCCCCCCCCccccceEEEeeccccCC-CccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
..+.+ ++..++..+ ..|+.+.++ ..| ..|
T Consensus 182 a~t~e-----------------~vas~rits~~~IK~I~~s---------~~g------------------------~~l 211 (405)
T KOG1273|consen 182 AETLE-----------------CVASFRITSVQAIKQIIVS---------RKG------------------------RFL 211 (405)
T ss_pred cchhe-----------------eeeeeeechheeeeEEEEe---------ccC------------------------cEE
Confidence 99877 666666665 678888886 444 399
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceee-----ecceeecCCeEEEEEeCC---eEEEEEecccCCcccCCC
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL-----VHNTIFSHTSLLLVQYSC---RLDILSVRLENNVESRSS 473 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~l~~~~~---~i~i~~~~~~~~~~~~~~ 473 (817)
+.-+.|..|+.|++........ ...+.+....... =.+++|+.+|.+++.++. .+.||.-..+.
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r-~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs------- 283 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGR-DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS------- 283 (405)
T ss_pred EEecCCceEEEEehhhhcccCc-cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc-------
Confidence 9999999999999875332210 0001111111112 236789999999987665 78888866554
Q ss_pred CCCCCccceeeeeeecCC-CCeEEEEecCCCcEEEEEcCCceEEEEeec
Q 003467 474 SGGHASTSLLVQVKSKAS-RKIICSTISNSGMLFAYSDHVKPSLFELKK 521 (817)
Q Consensus 474 ~~g~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~la~~~~~~i~l~~~~~ 521 (817)
+.++..+.. .....+.+.|-...++.-..|.+++|....
T Consensus 284 ---------LVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 284 ---------LVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred ---------eeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 334443333 567788888888888887889999998754
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=8.4e-22 Score=179.98 Aligned_cols=341 Identities=15% Similarity=0.145 Sum_probs=244.8
Q ss_pred eeeccCCCceEEEEECC-----CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-CCCCcEEEEEEeecCCCCCCCce
Q 003467 7 SSIDWKPSPVVALATSA-----DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-DPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 7 r~~~~h~~~I~~la~sp-----dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
+..+.|..+|..++|++ +-..+|+++. ..+.||+....- .....+.+.. .+.....-++|+-|-.. ....
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~-~ir~lq~y~D~d~~Esfytcsw~yd~~~--~~p~ 107 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG-GIRLLQSYADEDHDESFYTCSWSYDSNT--GNPF 107 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc-ceeeeeeccCCCCCcceEEEEEEecCCC--CCee
Confidence 34477889999999985 3456777776 569999876432 1123334433 25677888899887432 1245
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
||.+|.-|.|+|.|+.++++...+.+|+..|..+.+.|+..
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--------------------------------------- 148 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--------------------------------------- 148 (385)
T ss_pred EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC---------------------------------------
Confidence 89999999999999999999999999999999999999985
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
+++++++.|..|++|++++...+....-+.+|.+.|.++.|+++|.+|++++.|.+|++|++...+....
T Consensus 149 ----------qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 149 ----------QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred ----------cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 3899999999999999998888877777889999999999999999999999999999999986554444
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCe---EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGT---LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
+.. +..|+|++. +-+ -...+.+.. +-..|...|-|+.|- |+++++-+.++.
T Consensus 219 lE~--------------s~~~~~~~t~~pfpt----~~~~fp~fs------t~diHrnyVDCvrw~--gd~ilSkscena 272 (385)
T KOG1034|consen 219 LEL--------------SITYSPNKTTRPFPT----PKTHFPDFS------TTDIHRNYVDCVRWF--GDFILSKSCENA 272 (385)
T ss_pred hhh--------------hcccCCCCccCcCCc----ccccccccc------ccccccchHHHHHHH--hhheeecccCce
Confidence 431 134444441 111 112223322 334588899999997 688999999999
Q ss_pred EEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCC
Q 003467 318 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 397 (817)
Q Consensus 318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (817)
|..|.......... . -.++...-+.+..+.....++.-+.|..+ |-.+
T Consensus 273 I~~w~pgkl~e~~~-~--vkp~es~~Ti~~~~~~~~c~iWfirf~~d-------~~~~---------------------- 320 (385)
T KOG1034|consen 273 IVCWKPGKLEESIH-N--VKPPESATTILGEFDYPMCDIWFIRFAFD-------PWQK---------------------- 320 (385)
T ss_pred EEEEecchhhhhhh-c--cCCCccceeeeeEeccCccceEEEEEeec-------HHHH----------------------
Confidence 99998732221100 0 00111222345556666666777766521 3333
Q ss_pred CcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEec
Q 003467 398 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 463 (817)
Q Consensus 398 ~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~ 463 (817)
.|+.|...|.+++||+...... .............+...+|+.|+.+++.-.....||+++
T Consensus 321 --~la~gnq~g~v~vwdL~~~ep~---~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 321 --MLALGNQSGKVYVWDLDNNEPP---KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred --HHhhccCCCcEEEEECCCCCCc---cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 8999999999999999876532 122233334456778899999999998888888888875
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2e-20 Score=169.59 Aligned_cols=275 Identities=17% Similarity=0.217 Sum_probs=201.9
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC----CeEEEEEeecCceEEEEeeecCCCccceeec
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD----LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
..+...|..-|.++.|.+-|+. +|+|+.|++|+|||... -.+......|++.|+.+.|.+-.
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRR------mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE-------- 71 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRR------MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE-------- 71 (361)
T ss_pred cccccCCcceeeeeeecccCce------eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc--------
Confidence 3455455789999999999976 99999999999999653 34667778999999999998754
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC------CCceeEeeccCCc
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD------SDELIYHRSLPRV 202 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~h 202 (817)
.|+.+|+++.|+++.||.-.. +.......++...
T Consensus 72 ----------------------------------------fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 72 ----------------------------------------FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ----------------------------------------ccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 126999999999999998631 1233334566677
Q ss_pred cceEEEEEEccC--CCEEEEeeCCCcEEEEECCCCceEE------EEEeecCCCCCCCceeEEEeEEecCC----eEEEE
Q 003467 203 SGRVLSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIY------RITVGLGGLGSGPELCIWSLLSLRCG----TLVSA 270 (817)
Q Consensus 203 ~~~v~~v~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~------~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~s~ 270 (817)
.+.|+.+.|.|. |-.|++++.||.||||+.-.--.+. ++..-.. +...+.....|+.|.+.. .|+.|
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-CcccccCcceEEeeccccccCceEEEE
Confidence 789999999985 6789999999999999875433222 2221111 122466777889998765 46666
Q ss_pred cCC-----CcEEEEeCCCC----eEEEEeecCccCeeEEEEecCC----CEEEEEccCCcEEEEEeecccCCC-CCCCCC
Q 003467 271 DST-----GSVQFWDSRHG----TLLQAHSFHKGDVNALAAAPSH----NRVFSTGSDGQVILYKASCESIGP-NDGLSS 336 (817)
Q Consensus 271 ~~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~ 336 (817)
+.+ +.+.||....+ ..+.++..|..+|+.++|.|+- ..|++++.|| |+||.+....... .++...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 655 47899977643 3456788999999999999963 5788999999 9999998644211 111111
Q ss_pred cccc--ceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 003467 337 SEVI--KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 414 (817)
Q Consensus 337 ~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~ 414 (817)
.... -....+..+..|...|..+.+. --| ..|.|.|.||.|++|.
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~wN---------mtG------------------------tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRWN---------MTG------------------------TILSSTGDDGCVRLWK 316 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEEe---------eee------------------------eEEeecCCCceeeehh
Confidence 1111 2344677789999999999996 333 3999999999999997
Q ss_pred CC
Q 003467 415 AN 416 (817)
Q Consensus 415 ~~ 416 (817)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 65
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=3.9e-21 Score=178.83 Aligned_cols=216 Identities=19% Similarity=0.292 Sum_probs=174.8
Q ss_pred EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC----------------CeEEEEEeecCceEEEEe
Q 003467 52 QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD----------------LKQKIVLQSIDFSIWQMA 115 (817)
Q Consensus 52 ~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~i~~~~ 115 (817)
.....+| .+.|.-+.-++-++. .+.++-+..|.|.|||+.. .+++.++.+|.+.=+.++
T Consensus 144 ~~~~i~h-~g~~NRvr~~~~~~~----~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 144 EMKSIPH-YGGINRVRVSRLGNE----VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccc-ccccceeeecccCCc----ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 3344444 566777777766544 4477788899999999742 346788889999999999
Q ss_pred eecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeE
Q 003467 116 VAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY 195 (817)
Q Consensus 116 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 195 (817)
|||... ..|++|.--+.|++|...++.-..-
T Consensus 219 WSp~~~-------------------------------------------------g~LlsGDc~~~I~lw~~~~g~W~vd 249 (440)
T KOG0302|consen 219 WSPIKT-------------------------------------------------GRLLSGDCVKGIHLWEPSTGSWKVD 249 (440)
T ss_pred cccccc-------------------------------------------------cccccCccccceEeeeeccCceeec
Confidence 999542 2788888889999999998665555
Q ss_pred eeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC
Q 003467 196 HRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST 273 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d 273 (817)
.+.+.+|+..|-.++|||.. ..+++|+.||+|+|||++.+.....+.. +.|...|+.+.|+.+- .|++|+.|
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~------kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST------KAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe------eccCCceeeEEccCCcceeeecCCC
Confidence 57788999999999999965 5788999999999999999844333332 1688999999999776 69999999
Q ss_pred CcEEEEeCCC---CeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeeccc
Q 003467 274 GSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 274 g~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 327 (817)
|+++|||++. ++++..++.|..+|+++.|+|.. ..|+++|.|.+|.+||+....
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999985 67889999999999999999964 567788899999999997654
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=3.3e-20 Score=174.63 Aligned_cols=327 Identities=21% Similarity=0.216 Sum_probs=213.4
Q ss_pred EEEEEeCCCcEEEEEecCC------CceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC-------C---
Q 003467 172 RVALACDDGCVRIYRITDS------DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-------G--- 235 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-------g--- 235 (817)
.+|+|+.|..|+||-+..+ ..+.+...|.+|...|+++.|+|+|+.|++|+.+|.|.+|-... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 8999999999999988721 25667789999999999999999999999999999999997651 0
Q ss_pred --c--eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEE
Q 003467 236 --Y--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 236 --~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
+ -+.... .++|...|+.++|+|++ .+++++.|..+++||+..|+.++.+..|...+..++|.|-+++++
T Consensus 108 ~~ke~w~v~k~------lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 108 LNKEKWVVKKV------LRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred hCccceEEEEE------ecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhh
Confidence 1 111111 12688999999999999 689999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccc-eeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 311 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
+-+.|...+.+.+...+ ....|...+. +.+.
T Consensus 182 s~s~dr~~~~~~~~~~~--------------------~~~~~~~~~m~~~~~---------------------------- 213 (434)
T KOG1009|consen 182 SKSSDRHPEGFSAKLKQ--------------------VIKRHGLDIMPAKAF---------------------------- 213 (434)
T ss_pred hhccCcccceeeeeeee--------------------eeeeeeeeEeeeccc----------------------------
Confidence 99999877777776544 1111111110 0000
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 469 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~ 469 (817)
..+.....++|.-.+.+ .....++|+|+|.++++..+.+++-.-...+..
T Consensus 214 -------------~~~e~~s~rLfhDeTlk----------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~t- 263 (434)
T KOG1009|consen 214 -------------NEREGKSTRLFHDETLK----------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTS- 263 (434)
T ss_pred -------------CCCCcceeeeeecCchh----------------hhhhhcccCCCCcEEEcccceeeeCCceeecee-
Confidence 01112233444444333 223366788999888877664432110000000
Q ss_pred cCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEe
Q 003467 470 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 549 (817)
Q Consensus 470 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs 549 (817)
-...+....+.+..+. ++.--.+++... .-.|++... ... .. +.--
T Consensus 264 --Yvfsrk~l~rP~~~lp------------~~~k~~lavr~~--pVy~elrp~--------------~~~--~~--~~~l 309 (434)
T KOG1009|consen 264 --YVFSRKDLKRPAARLP------------SPKKPALAVRFS--PVYYELRPL--------------SSE--KF--LFVL 309 (434)
T ss_pred --EeeccccccCceeecC------------CCCcceEEEEee--eeEEEeccc--------------ccc--cc--cccc
Confidence 0000000000011110 111111222111 112222210 000 00 1112
Q ss_pred cCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce
Q 003467 550 YDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 627 (817)
Q Consensus 550 pd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~ 627 (817)
|-+-.+|+++.+ .|+|||.++.+.+...... |-..|+.++||+||.+|+..+.||...+--++..++
T Consensus 310 pyrlvfaiAt~~-svyvydtq~~~P~~~v~ni----------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 310 PYRLVFAIATKN-SVYVYDTQTLEPLAVVDNI----------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccceEEEEeecc-eEEEeccccccceEEEeee----------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 445556666655 5999999988888877765 889999999999999999999999888877776664
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2.9e-18 Score=186.54 Aligned_cols=250 Identities=27% Similarity=0.423 Sum_probs=202.9
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEE-eecCCCCCCCceEEEeeC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVW-CHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~-s~~~~~~~~~~~l~s~~~ 86 (817)
.+..|...|.++.+.+.+..++.++.|+.+.+|+...+.. ....+.+.+...+..+.+ ++++.. .++..+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 131 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK---LIKSLEGLHDSSVSKLALSSPDGNS-----ILLASSS 131 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce---eEEEEeccCCCceeeEEEECCCcce-----EEeccCC
Confidence 4678999999999999999999999999999999987751 355555543347788888 666652 2455444
Q ss_pred -CCeEEEEECCC-CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 87 -DGSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 87 -d~~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
|+.+.+||... ......+..|...|..++|+|++
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------------------------- 167 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------------------------------------- 167 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC--------------------------------------------
Confidence 99999999998 88889999999999999999998
Q ss_pred cccccCCEEEEEeC-CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEE-EE
Q 003467 165 QSVVEDRRVALACD-DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIY-RI 241 (817)
Q Consensus 165 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~-~~ 241 (817)
..+++++. |+.+++|+...+..+ ..+.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+
T Consensus 168 ------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 168 ------KLLASGSSLDGTIKLWDLRTGKPL---STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred ------CEEEecCCCCCceEEEEcCCCceE---EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 36777775 999999999864444 67777999999999999998 55555899999999988777776 34
Q ss_pred EeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeE-EEEeecCccCeeEEEEecCCCEEEEEccCCcEE
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~ 319 (817)
. .|.... ...|++++ .+++++.++.+++|+...... +..+..|...+.++.|+|++..+++++.|+.+.
T Consensus 239 ~--------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 239 S--------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309 (466)
T ss_pred C--------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEE
Confidence 4 455554 33899998 788999999999999987664 555567889999999999999999988898999
Q ss_pred EEEeeccc
Q 003467 320 LYKASCES 327 (817)
Q Consensus 320 iw~~~~~~ 327 (817)
+|+.....
T Consensus 310 ~~~~~~~~ 317 (466)
T COG2319 310 LWDLETGK 317 (466)
T ss_pred EEEcCCCc
Confidence 99776654
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.4e-20 Score=170.54 Aligned_cols=301 Identities=18% Similarity=0.202 Sum_probs=204.4
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccC----CCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSAD----GNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d----g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
.+|+.+. ..+.||.......+...+... .|......++|+-| ..+||.|+.-|.|+|.|+.++++...+.
T Consensus 57 vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~--- 132 (385)
T KOG1034|consen 57 VFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR--- 132 (385)
T ss_pred eEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee---
Confidence 4555444 678889887554443333322 36777888888654 3488999999999999999999999988
Q ss_pred CCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEe---ecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
+|...|+.+.+.|+. .+++++.|..|++|++++..++..+ .+|...|+++.|+++|.+++++|.|.++++
T Consensus 133 -----ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 133 -----GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred -----ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 799999999999998 7999999999999999999999887 469999999999999999999999999999
Q ss_pred EEeecccCCCCCCCC-----------CccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 321 YKASCESIGPNDGLS-----------SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 321 w~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
|++...+....-+.. -+.....+-...+...|...|.|+.|.
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--------------------------- 260 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--------------------------- 260 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---------------------------
Confidence 999855421100000 000000000111334455555555542
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCcccc-cCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANEFTK-FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV 468 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~ 468 (817)
+++++|-+-++.|..|....... +.
T Consensus 261 --------gd~ilSkscenaI~~w~pgkl~e~~~---------------------------------------------- 286 (385)
T KOG1034|consen 261 --------GDFILSKSCENAIVCWKPGKLEESIH---------------------------------------------- 286 (385)
T ss_pred --------hhheeecccCceEEEEecchhhhhhh----------------------------------------------
Confidence 24888888888888887632110 00
Q ss_pred ccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEE
Q 003467 469 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 548 (817)
Q Consensus 469 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 548 (817)
+++. |++. . .+ +.+..++.....-...+|
T Consensus 287 ----------------~vkp------------~es~--------~-------------Ti--~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 287 ----------------NVKP------------PESA--------T-------------TI--LGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ----------------ccCC------------Cccc--------e-------------ee--eeEeccCccceEEEEEee
Confidence 0000 0000 0 00 000111111111223456
Q ss_pred ecCCCEEEEEecCCcEEEEEccCCcee--eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 549 SYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 549 spd~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
.|-++.||.|.+.|.|++||++..+.. .++... . ....|...+||.||..|+...+|+.|.-||.
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s-~--------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS-K--------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEec-c--------ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 778999999999999999999866542 222221 1 3578999999999999999999999999985
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-20 Score=180.85 Aligned_cols=289 Identities=17% Similarity=0.259 Sum_probs=206.0
Q ss_pred eCCCcEEEEEecCCCceeEeeccCCcc--ceEEEEEEccCCCEEEEe--eCCCcEEEEECCCCce--EEEEEeecCCCCC
Q 003467 177 CDDGCVRIYRITDSDELIYHRSLPRVS--GRVLSVTWSADGNMLYSG--SSDGYIRSWDAKLGYE--IYRITVGLGGLGS 250 (817)
Q Consensus 177 ~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~dg~~l~s~--~~dg~i~vwd~~~g~~--~~~~~~~~~~~~~ 250 (817)
+....+++||+...... ..+..|+ -.+.++.|+.... |+++ +.|..|++|.- .|+. +...... .+
T Consensus 9 S~gd~~kl~D~s~~~~~---~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~-~g--- 79 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETK---SEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEK-DGKTPEVPRVRKL-TG--- 79 (673)
T ss_pred ccCCceEEeecccccCc---cccccCCCCCcceeeeccccce-EEEeecCCceeEEEecc-cCCCCccceeecc-cc---
Confidence 33346899999743322 2222222 2499999987653 4444 45778999973 3441 1111110 01
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCC
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP 330 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (817)
....+|.+..++ -++++|+..+.|+|||++...+.+.++.|...|+++.++-...+|++++..|.|.+-.+.++..
T Consensus 80 d~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 80 DNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred chHHHHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 234455554443 4799999999999999997777888999999999999999999999999999999999988762
Q ss_pred CCCCCCccccceEEEeeccccC-CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 331 NDGLSSSEVIKKWIYVGSVRAH-THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
...+... ...|+-+.++ +..+ -+|.+++.+|.
T Consensus 156 ---------------tt~f~~~sgqsvRll~ys---------~skr-----------------------~lL~~asd~G~ 188 (673)
T KOG4378|consen 156 ---------------TTTFTIDSGQSVRLLRYS---------PSKR-----------------------FLLSIASDKGA 188 (673)
T ss_pred ---------------ccceecCCCCeEEEeecc---------cccc-----------------------eeeEeeccCCe
Confidence 2222222 2234445554 3222 36777777777
Q ss_pred EEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeec
Q 003467 410 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 489 (817)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 489 (817)
|.+||......+
T Consensus 189 VtlwDv~g~sp~-------------------------------------------------------------------- 200 (673)
T KOG4378|consen 189 VTLWDVQGMSPI-------------------------------------------------------------------- 200 (673)
T ss_pred EEEEeccCCCcc--------------------------------------------------------------------
Confidence 777777642210
Q ss_pred CCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC-CCEEEEEecCCcEEEEE
Q 003467 490 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVD 568 (817)
Q Consensus 490 ~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-~~~l~~~~~dg~i~v~d 568 (817)
+ .-...|..+...++|+|. ..+|++.+.|..|++||
T Consensus 201 ---------------------------------------~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 201 ---------------------------------------F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ---------------------------------------c----chhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 0 113355667889999994 56778889999999999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCC
Q 003467 569 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN 648 (817)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d 648 (817)
+.......++. ...+.+.++|+++|.+|++|...|.|..||+...+....+...|...|++++|.| .
T Consensus 238 ~~s~~s~~~l~------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s 304 (673)
T KOG4378|consen 238 IRSQASTDRLT------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-S 304 (673)
T ss_pred cccccccceee------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-c
Confidence 98777777777 5788999999999999999999999999999988877677777888999999998 5
Q ss_pred C
Q 003467 649 N 649 (817)
Q Consensus 649 ~ 649 (817)
.
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 4
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=179.68 Aligned_cols=239 Identities=18% Similarity=0.248 Sum_probs=182.7
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCC-cEEEEE---------------EcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSG-WHCQLT---------------VHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~---------------~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.|+|+|+|.-|..|+|||+.=.... +...+- ...+|...|.+|+|...-+ +.|||||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-----nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-----NVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-----eeEEecCCC
Confidence 4789999999999999998632211 000000 0113478888999987654 569999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
.+|++||+.+|++..++..|+..|.++.|+|...
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p---------------------------------------------- 299 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP---------------------------------------------- 299 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCc----------------------------------------------
Confidence 9999999999999999999999999999999874
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCC-ceEEEEEeec
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLG-YEIYRITVGL 245 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~ 245 (817)
..|++|+.|++|.+.|.+......... .-.+.|-.++|.|... .++++..||+|+-+|++.. +++..+.
T Consensus 300 ---~~LLsGs~D~~V~l~D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~--- 370 (463)
T KOG0270|consen 300 ---SVLLSGSYDGTVALKDCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK--- 370 (463)
T ss_pred ---eEEEeccccceEEeeeccCccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---
Confidence 389999999999999998433321112 2356799999998765 4566778999999999874 8888888
Q ss_pred CCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCe--EEEEeecCccCeeEEEEecCCC-EEEEEccCCcEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVIL 320 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~i 320 (817)
.|...|.++++++.. .+++++.++.|++|++..-. .+......-+...|.++.|+-. .++.||..+.+++
T Consensus 371 -----AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 371 -----AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred -----eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 699999999998765 79999999999999987432 2222222234466777888764 4566777888999
Q ss_pred EEeeccc
Q 003467 321 YKASCES 327 (817)
Q Consensus 321 w~~~~~~ 327 (817)
||+.+..
T Consensus 446 wd~~~~~ 452 (463)
T KOG0270|consen 446 WDIFTNS 452 (463)
T ss_pred eecccCh
Confidence 9987765
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=186.57 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=207.7
Q ss_pred eEEEEcCCCcEEEEeCCCCeE------EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccc
Q 003467 266 TLVSADSTGSVQFWDSRHGTL------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 339 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 339 (817)
.|+.+.++|.|.++|.+...- +.....|...|..+.|.|....|++++.|.++++||+.+..
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~------------ 133 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR------------ 133 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce------------
Confidence 689999999999999875322 35567899999999999977889999999999999999887
Q ss_pred cceEEEeec--cccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 340 IKKWIYVGS--VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 340 ~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
++.. ..+|+..|.+++|. |.+. ..+++|+.||.+.+||+..
T Consensus 134 -----l~G~~~~~GH~~SvkS~cf~---------~~n~-----------------------~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 134 -----LVGGRLNLGHTGSVKSECFM---------PTNP-----------------------AVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred -----eecceeecccccccchhhhc---------cCCC-----------------------cceeeccCCCcEEEEEEec
Confidence 4444 88999999999997 5544 5899999999999999975
Q ss_pred ccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceee-ee--eecCCCCe
Q 003467 418 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV-QV--KSKASRKI 494 (817)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~i 494 (817)
...-.....+.. ++........ ..+.+. ++ .......|
T Consensus 177 n~~d~~e~~~~~-----------------------------~~~~~n~~pt----------pskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 177 NGVDALEEFDNR-----------------------------IYGRHNTAPT----------PSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred cchhhHHHHhhh-----------------------------hhccccCCCC----------CCchhhccccccccccCce
Confidence 431110000000 0000000000 000000 00 01111223
Q ss_pred EE---EEecCCCcEEEE-E-cCCceEEEEeecCCCCCceEEEeeecCCcc---ccceeEEEEecCCCEEEEEecCCcEEE
Q 003467 495 IC---STISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRK---LQFAHSMIFSYDSSQLIIAGHDRRIYV 566 (817)
Q Consensus 495 ~~---~~~s~~g~~la~-~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~fspd~~~l~~~~~dg~i~v 566 (817)
.+ +.+..|...||+ + .|+.|++|||..+...-+.-......++.+ .-.+.++.....|.+|.+.+.|+.|+.
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 33 445566677777 3 489999999987322111101111222333 225677777777899998888999999
Q ss_pred EEccCCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEe
Q 003467 567 VDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF 644 (817)
Q Consensus 567 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~ 644 (817)
|++.+.. .+..+.+... ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+...|.-.|++++|
T Consensus 298 ynm~s~s~sP~~~~sg~~~---------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLN---------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW 368 (720)
T ss_pred EeccccCcCchhhccCccc---------ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee
Confidence 9996542 3334443211 1112233578999999999999999999999888766666778789999999
Q ss_pred cCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 645 PPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 645 sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
.|..-.-+++++.|..+++|++..+
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCc
Confidence 9955556888899999999999655
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=7.1e-20 Score=174.97 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=220.0
Q ss_pred eccCCccceEEEEEEccCCC--EEEEeeCCCcEEEEECCCCc----eEEEEEeecCCCCCCCceeEEEeEEecCC--eEE
Q 003467 197 RSLPRVSGRVLSVTWSADGN--MLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLV 268 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~--~l~s~~~dg~i~vwd~~~g~----~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~ 268 (817)
....-+.++|++++|+|... .+++|..-|+|-+||+.+.+ -+..+. .|..+|.++.|+|.. +++
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------PHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec--------cCCccccceEecCCChhhee
Confidence 44556789999999999754 78888889999999995221 222333 799999999999988 799
Q ss_pred EEcCCCcEEEEeCCCCeE--EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEe
Q 003467 269 SADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV 346 (817)
Q Consensus 269 s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (817)
+.+.||+|++-|++.+.. +..+......+..+.|+.+...++.++.=|...+||++.... ..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----------------~~ 315 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----------------EY 315 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----------------cc
Confidence 999999999999997544 333333455677888988888888888878999999998763 34
Q ss_pred eccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCccc
Q 003467 347 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 426 (817)
Q Consensus 347 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~ 426 (817)
..++.|...|.++++. |-.. .+|++++.|++.++||++....-.
T Consensus 316 ~~~~lh~kKI~sv~~N---------P~~p-----------------------~~laT~s~D~T~kIWD~R~l~~K~---- 359 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALN---------PVCP-----------------------WFLATASLDQTAKIWDLRQLRGKA---- 359 (498)
T ss_pred hhhhhhhcccceeecC---------CCCc-----------------------hheeecccCcceeeeehhhhcCCC----
Confidence 5678888899999997 4332 489999999999999997632000
Q ss_pred CCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEE
Q 003467 427 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 506 (817)
Q Consensus 427 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 506 (817)
. |
T Consensus 360 -----------------------------------------------------------------s--------p----- 361 (498)
T KOG4328|consen 360 -----------------------------------------------------------------S--------P----- 361 (498)
T ss_pred -----------------------------------------------------------------C--------c-----
Confidence 0 0
Q ss_pred EEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEcc----CCceeeeeccCc
Q 003467 507 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS----SSELLHTFTPCR 582 (817)
Q Consensus 507 a~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~ 582 (817)
+ .....|...|.+..|||++-.|++.+.|.+|+|||.. ..+.+.++....
T Consensus 362 ---------------------~-----lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 362 ---------------------F-----LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred ---------------------c-----eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 0 1112344478999999988889999999999999973 334445554321
Q ss_pred ccccccCCCCCCce--eEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEE-EEecCCCCC-eEEEEecC
Q 003467 583 EEHDREIQPSEPPI--TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA-AGFPPQNNN-VLIITTSS 658 (817)
Q Consensus 583 ~~~~~~~~~~~~~i--~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~-l~~sp~d~~-~l~~~~~d 658 (817)
. +..++ ....|.||..++++|..-..|-|||-+.++....+.......|.+ ..|+| -+. +++-++..
T Consensus 416 ~--------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 416 R--------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP-MRDTLAAGGNSS 486 (498)
T ss_pred c--------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc-cccceeccCCcc
Confidence 1 22222 345799999999999999999999999998666654433334444 57999 666 44445567
Q ss_pred CeEEEEEcCC
Q 003467 659 NQVYVFDVEA 668 (817)
Q Consensus 659 ~~i~vwd~~~ 668 (817)
|.|+||--+.
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 8999986554
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.1e-21 Score=205.36 Aligned_cols=292 Identities=18% Similarity=0.266 Sum_probs=224.1
Q ss_pred EEEEECCCCC-eEEEE----------ecCCcEEEEecCCCCCC--cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 17 VALATSADDS-QVAAA----------REDGSLEIWLVSPGTSG--WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 17 ~~la~spdg~-~la~~----------~~dg~i~iwd~~~~~~~--~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
.-+||||++. +||+| +.+.+++||.+.-.... ......+.. ..+...|+|++.+.. +.+.||.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g~~--~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSYGSH--SHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeecccCCC--ccceeec
Confidence 3478899886 66665 34677888876533221 012223332 468899999998753 2357899
Q ss_pred eeCCCeEEEEECCCC------eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 84 SSIDGSVSEWDLYDL------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
|..||.|.+||...- ..+.+...|.+.|..+.|++.+.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~------------------------------------ 129 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG------------------------------------ 129 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC------------------------------------
Confidence 999999999998652 34567788999999999999884
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccCC-CEEEEeeCCCcEEEEECCC
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~ 234 (817)
+.||+|+.||.|.|||+...+.. ..+. .-.+.|.+++|+..- ..|++++.+|.+.|||++.
T Consensus 130 -------------nlLASGa~~geI~iWDlnn~~tP---~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 130 -------------NLLASGADDGEILIWDLNKPETP---FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred -------------ceeeccCCCCcEEEeccCCcCCC---CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence 38999999999999999854433 2331 245789999998654 4678889999999999999
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCC---cEEEEeCCC-CeEEEEeecCccCeeEEEEecCC-C
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG---SVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-N 307 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg---~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~-~ 307 (817)
.+.+..+... .....+..++|+|+. ++++++.|. .|.+||++. ...++.+.+|...|.++.|++.+ .
T Consensus 194 ~~pii~ls~~------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 194 KKPIIKLSDT------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred CCcccccccC------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch
Confidence 8888877742 223558899999999 566665543 399999985 45678889999999999999976 8
Q ss_pred EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcc
Q 003467 308 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 387 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
+|++++.|+.|.+|+.++++ .+..+......+..+.|+ |..
T Consensus 268 lllSsgkD~~ii~wN~~tgE-----------------vl~~~p~~~nW~fdv~w~---------pr~------------- 308 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGE-----------------VLGELPAQGNWCFDVQWC---------PRN------------- 308 (1049)
T ss_pred hhhcccCCCCeeEecCCCce-----------------EeeecCCCCcceeeeeec---------CCC-------------
Confidence 89999999999999999988 677777777778888876 333
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 388 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 388 ~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
...++.++.||.|-+|.+....
T Consensus 309 ----------P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 309 ----------PSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ----------cchhhhheeccceeeeeeecCC
Confidence 2488899999999999998755
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.4e-19 Score=170.54 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=132.0
Q ss_pred ceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEEE-EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEe
Q 003467 204 GRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYR-ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD 280 (817)
Q Consensus 204 ~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd 280 (817)
.+|.++.|.+++. .|+||+.|..|++|-+..+..-.. ...........|...|+.+.|+|+| .|++|+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4789999998877 999999999999998765332211 1111112233799999999999999 799999999999997
Q ss_pred CC--------C--------CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEE
Q 003467 281 SR--------H--------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 344 (817)
Q Consensus 281 ~~--------~--------~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 344 (817)
.. + ......+.+|..+|..++|+|++.++++++.|..+++||+..+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~----------------- 156 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ----------------- 156 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-----------------
Confidence 65 2 23345678899999999999999999999999999999999988
Q ss_pred EeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 345 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 345 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
....+..|.+.|..+++. |.++ ++++-+.|...+.+.+.
T Consensus 157 l~~~~~dh~~yvqgvawD---------pl~q------------------------yv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWD---------PLNQ------------------------YVASKSSDRHPEGFSAK 195 (434)
T ss_pred eEeeccccccccceeecc---------hhhh------------------------hhhhhccCcccceeeee
Confidence 788999999999999997 6665 88888888766655554
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2e-17 Score=179.89 Aligned_cols=369 Identities=25% Similarity=0.383 Sum_probs=274.7
Q ss_pred CCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-EEEEEeecCc-eEEEEee-ecCCCccceeeccCccccC
Q 003467 59 PKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQSIDF-SIWQMAV-APSNSSLMHAVTNSDHIGN 135 (817)
Q Consensus 59 ~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~i~~~~~-s~~~~~~~~~~~~~~~~~~ 135 (817)
+...|.++.|.+.+.. ++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++..
T Consensus 64 ~~~~i~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 124 (466)
T COG2319 64 HEDSITSIAFSPDGEL------LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS------------- 124 (466)
T ss_pred ccceEEEEEECCCCcE------EEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-------------
Confidence 3789999999999987 8888899999999999887 6777776443 6777777 555521
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE-EeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEcc
Q 003467 136 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL-ACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSA 213 (817)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~ 213 (817)
.++. +..|+.+.+|+... .... ..+..|...|..++|+|
T Consensus 125 ------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~ 165 (466)
T COG2319 125 ------------------------------------ILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSP 165 (466)
T ss_pred ------------------------------------EEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECC
Confidence 3444 44499999999975 2333 77889999999999999
Q ss_pred CCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EE-EEcCCCcEEEEeCCCCeEEE-E
Q 003467 214 DGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LV-SADSTGSVQFWDSRHGTLLQ-A 289 (817)
Q Consensus 214 dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~-s~~~dg~i~iwd~~~~~~~~-~ 289 (817)
++..+++++. |+.+++|++..+..+..+. .|...|.+++|+|++. ++ +++.|+.|++||...+..+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLA--------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCCceEEeec--------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence 9999999986 9999999999888888777 6899999999999984 44 44999999999999888888 6
Q ss_pred eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCC
Q 003467 290 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 369 (817)
Q Consensus 290 ~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 369 (817)
+..|.... ...|++++..+++++.|+.+++|+...... .......|...+.++.+.
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~------- 293 (466)
T COG2319 238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------LLRTLSGHSSSVLSVAFS------- 293 (466)
T ss_pred cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------EEEEEecCCccEEEEEEC-------
Confidence 88888876 448999998899999999999999987651 112225667777777775
Q ss_pred CCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEE
Q 003467 370 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 449 (817)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 449 (817)
|++. .+++++.|+.+.+|+........
T Consensus 294 --~~~~------------------------~~~~~~~d~~~~~~~~~~~~~~~--------------------------- 320 (466)
T COG2319 294 --PDGK------------------------LLASGSSDGTVRLWDLETGKLLS--------------------------- 320 (466)
T ss_pred --CCCC------------------------EEEEeeCCCcEEEEEcCCCceEE---------------------------
Confidence 4443 56667777777777554321000
Q ss_pred EEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceE
Q 003467 450 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEW 529 (817)
Q Consensus 450 l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~ 529 (817)
T Consensus 321 -------------------------------------------------------------------------------- 320 (466)
T COG2319 321 -------------------------------------------------------------------------------- 320 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeecCCccccceeEEEEecCCCEEEEE-ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEE
Q 003467 530 IINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 608 (817)
Q Consensus 530 ~~~~~~~~~~~~~i~~~~fspd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 608 (817)
.. . ...+...+..+.|.+++..++.+ ..|+.+.+|++........... ...+..+.+++ ....
T Consensus 321 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~ 384 (466)
T COG2319 321 SL--T-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG------------HSNVLSVSFSP-DGRV 384 (466)
T ss_pred Ee--e-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC------------CceEEEEEECC-CCCE
Confidence 00 0 01111145566663333555555 5778899999887663332222 22288999988 5444
Q ss_pred EE-EeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 609 AA-VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 609 a~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
.. +..++.+.+|+.............. ..+..+.+++ ++..++.++.++.+.+|++..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 44 6889999999999988766665432 5899999999 998999999999999999988
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=5.7e-20 Score=171.16 Aligned_cols=247 Identities=20% Similarity=0.266 Sum_probs=187.7
Q ss_pred cCCCceEEEEECCCC--CeEEEEecCCcEEEEecCCCC------------CCcEEEEEEcCCCCCcEEEEEEeecCCCCC
Q 003467 11 WKPSPVVALATSADD--SQVAAAREDGSLEIWLVSPGT------------SGWHCQLTVHGDPKSRISSLVWCHAGKMGL 76 (817)
Q Consensus 11 ~h~~~I~~la~spdg--~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~ 76 (817)
.|.+.|+.+..++-+ .+.|+=+..|.|.|||+...- .....+.++.+| ...=.+|+|||- +.
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~-~~-- 224 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPI-KT-- 224 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-Cccceeeecccc-cc--
Confidence 466777777777754 455555788999999986311 012335677777 577789999993 33
Q ss_pred CCceEEEeeCCCeEEEEECCCCeEE---EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 77 PGGRLFSSSIDGSVSEWDLYDLKQK---IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 77 ~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
++|+||.--+.|++|...+|.-. ..+.+|...|..++|||...
T Consensus 225 --g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-------------------------------- 270 (440)
T KOG0302|consen 225 --GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-------------------------------- 270 (440)
T ss_pred --cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--------------------------------
Confidence 67999888889999999887644 45667999999999999874
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
..+|+|+-||.|+|||++.+..-.. ...+.|.+.|+-+.|+.+-.+||+|+.||+++|||++
T Consensus 271 -----------------~vfaScS~DgsIrIWDiRs~~~~~~-~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR 332 (440)
T KOG0302|consen 271 -----------------GVFASCSCDGSIRIWDIRSGPKKAA-VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR 332 (440)
T ss_pred -----------------ceEEeeecCceEEEEEecCCCccce-eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence 3899999999999999996633222 2337899999999999998899999999999999997
Q ss_pred C---CceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeE----------------EEEeec
Q 003467 234 L---GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL----------------LQAHSF 292 (817)
Q Consensus 234 ~---g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~----------------~~~~~~ 292 (817)
. ++.+..+. .|..+|+++.|+|.. .|++++.|..|.+||+....- -+-+-.
T Consensus 333 ~~~~~~pVA~fk--------~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 333 QFKSGQPVATFK--------YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred hccCCCcceeEE--------eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 5 56677777 699999999999865 799999999999999853111 011222
Q ss_pred C--ccCeeEEEEecCC-CEEEEEccCCcEEEEE
Q 003467 293 H--KGDVNALAAAPSH-NRVFSTGSDGQVILYK 322 (817)
Q Consensus 293 h--~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~ 322 (817)
| ...+..+.|+++- .+|++.+.||- .+|.
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccce-eEEE
Confidence 3 4568888898754 46777777874 4443
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=165.91 Aligned_cols=353 Identities=14% Similarity=0.111 Sum_probs=221.0
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCe
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~ 285 (817)
-++|||+|+++|+++.- .+.|-|..+-+..+.+. .-..|.-+.|..|. .|.....++.|.+|++..-+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 46799999999999866 78888887766554443 23345567777777 45666778899999999888
Q ss_pred EEEEeecCccCeeEEEEecCCCEEEE-EccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 286 LLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
-...+....+.+..++|||||+.|+. ...+-.|.+|.+.+... ..+......+..++|.
T Consensus 83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------------------~~~~~pK~~~kg~~f~-- 142 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------------------YLLPHPKTNVKGYAFH-- 142 (447)
T ss_pred eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee------------------EEecccccCceeEEEC--
Confidence 88888888899999999999976665 55599999999998752 2233335556888887
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
|||+ +.+..+.-...-.+++...+
T Consensus 143 -------~dg~------------------------f~ai~sRrDCkdyv~i~~c~------------------------- 166 (447)
T KOG4497|consen 143 -------PDGQ------------------------FCAILSRRDCKDYVQISSCK------------------------- 166 (447)
T ss_pred -------CCCc------------------------eeeeeecccHHHHHHHHhhH-------------------------
Confidence 7776 43333321111011100000
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC---CceEEEEeec
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH---VKPSLFELKK 521 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~---~~i~l~~~~~ 521 (817)
....+.+.... .-..+.+.+||||.+||+-+. ..|..|+-.
T Consensus 167 ----------------------------------~W~ll~~f~~d-T~DltgieWsPdg~~laVwd~~Leykv~aYe~~- 210 (447)
T KOG4497|consen 167 ----------------------------------AWILLKEFKLD-TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG- 210 (447)
T ss_pred ----------------------------------HHHHHHhcCCC-cccccCceECCCCcEEEEecchhhheeeeeeec-
Confidence 00011111110 112334456666666555322 222222111
Q ss_pred CCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeec----------------------
Q 003467 522 GKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT---------------------- 579 (817)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------- 579 (817)
-++..++|+|.+++|++|+.|+.++|.+--+.+....|-
T Consensus 211 -------------------lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 211 -------------------LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred -------------------cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 034455566666666666666655554432222111110
Q ss_pred ---------cCc-c----cc-------------------cccCCCCCCceeEEEEccCCCEEEEEeCC--CcEEEEECCC
Q 003467 580 ---------PCR-E----EH-------------------DREIQPSEPPITKMFTSSDGQWLAAVNCF--GDVYIFNLEI 624 (817)
Q Consensus 580 ---------~~~-~----~~-------------------~~~~~~~~~~i~~l~~s~dg~~la~~~~d--g~i~vwd~~~ 624 (817)
+.. + .. ....+.-.-.+..++||+|..|+|+-.+. ..+.+||+..
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 000 0 00 00011124457789999999999997654 5799999999
Q ss_pred cceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCC
Q 003467 625 QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSS 704 (817)
Q Consensus 625 ~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~ 704 (817)
.+....+...| +|.+..|.| ....|+++.....+++|....-.. -........|..+.|.-+ +
T Consensus 352 l~l~avLiQk~--piraf~WdP-~~prL~vctg~srLY~W~psg~~~------------V~vP~~GF~i~~l~W~~~--g 414 (447)
T KOG4497|consen 352 LKLHAVLIQKH--PIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRV------------VGVPKKGFNIQKLQWLQP--G 414 (447)
T ss_pred hhhhhhhhhcc--ceeEEEeCC-CCceEEEEcCCceEEEEcCCCceE------------EecCCCCceeeeEEecCC--C
Confidence 98877665544 899999999 777888888888899998876432 112222368999999986 5
Q ss_pred CEEEEEcCceEEEE
Q 003467 705 SSVIIYSARAMCVI 718 (817)
Q Consensus 705 ~~~~~~~~~~~~~~ 718 (817)
+.+++-+.+++|+-
T Consensus 415 ~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 415 EFIVLCGKDAFCVA 428 (447)
T ss_pred cEEEEEcCCceEEE
Confidence 67888899998886
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=166.40 Aligned_cols=290 Identities=16% Similarity=0.177 Sum_probs=199.5
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
+.|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+. ...+.+++...|+.+.-.|++. |.+-+.|..
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~d~-------l~tqgRd~~ 78 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPNDS-------LDTQGRDPL 78 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCCcc-------hhhcCCCce
Confidence 58999999999998886 88899999999999998874 5566666688999999999754 899999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCc----cccCccccCCCC-CCCCccccccCCCCCCcccc-
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSD----HIGNGYLNDKSN-DSDDHETSESENDSDSDELH- 163 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 163 (817)
+.+|++.-+.-+.. |.-.+.++.|++..- +......+ ....+.-. .+. +..........++.......
T Consensus 79 L~lw~ia~s~~i~i---~Si~~nslgFCrfSl--~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 79 LILWTIAYSAFISI---HSIVVNSLGFCRFSL--VKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred EEEEEccCcceEEE---eeeecccccccccee--ccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCc
Confidence 99999987553322 334455555554330 00000000 00000000 000 00000111111111111111
Q ss_pred --cc----ccccCCEEEEEeCCCcEEEEEecCCCcee-------EeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEE
Q 003467 164 --EQ----SVVEDRRVALACDDGCVRIYRITDSDELI-------YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 230 (817)
Q Consensus 164 --~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 230 (817)
+. ....--++++|.++|.+.+||+.++.... .......|+.+|.++.|.+.-..=++|+.+-.+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 11 11122377889999999999998753321 113345789999999999877777888888899999
Q ss_pred ECCC--CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC
Q 003467 231 DAKL--GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 231 d~~~--g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
++.. |.+....... -....|..+..-||+ .+++++.|+.|++|..++.+++..++.|.+.|.+++|+|+..
T Consensus 233 Sl~~s~gslq~~~e~~------lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEIT------LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccccceEE------ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 8863 3333222211 234557788889999 689999999999999999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEe
Q 003467 308 RVFSTGSDGQVILYKA 323 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~ 323 (817)
.+++++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.2e-19 Score=171.12 Aligned_cols=247 Identities=15% Similarity=0.215 Sum_probs=182.3
Q ss_pred EEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCC-CCCCceEEEeeCCCeEEEE
Q 003467 18 ALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKM-GLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 18 ~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~-~~~~~~l~s~~~d~~i~vw 93 (817)
-+.+-|...+|++|..+ ..+++|=+......+.+-+-+.-. .--.|++|...+.. +...+++|.|..|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilp--afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILP--AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceecc--CcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 45566777888888643 456666655555444444333221 23356677544111 1123569999999999999
Q ss_pred ECCCCeEE---EE------------------EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccc
Q 003467 94 DLYDLKQK---IV------------------LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 152 (817)
Q Consensus 94 d~~~~~~~---~~------------------~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (817)
|+.--..+ .. ..+|...|..++|+..-.
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~------------------------------- 256 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR------------------------------- 256 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-------------------------------
Confidence 98532111 11 224666666777765543
Q ss_pred cCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEE
Q 003467 153 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd 231 (817)
..||+|+.|.+|++||+.+++.. .++..|.+.|.++.|+|. ..+|++|+.|++|.+.|
T Consensus 257 ------------------nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 257 ------------------NVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ------------------eeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 38999999999999999988776 778889999999999985 56899999999999999
Q ss_pred CCCCce-EEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCC-
Q 003467 232 AKLGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH- 306 (817)
Q Consensus 232 ~~~g~~-~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~- 306 (817)
.+.... -... ...+.|-.++|.+.. .++++..||+|+-+|++. ++++.+++.|.+.|.+|++++.-
T Consensus 316 ~R~~~~s~~~w---------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 316 CRDPSNSGKEW---------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred ccCccccCceE---------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 984222 2222 255678889999877 689999999999999997 58999999999999999998765
Q ss_pred CEEEEEccCCcEEEEEeeccc
Q 003467 307 NRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 307 ~~l~~~~~dg~i~iw~~~~~~ 327 (817)
..+++++.|+.|++|++....
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred cceeeccccceEEEEeecCCC
Confidence 467789999999999997755
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.3e-20 Score=178.55 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=206.7
Q ss_pred ceEEEEECCCCCeEEEE--ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 15 PVVALATSADDSQVAAA--REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 15 ~I~~la~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
.|..+.|+.... |+++ +.|..|++|.-..............|.....|.+..+| .| ++++|..+.|++
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y------~~sgG~~~~Vki 105 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LY------EISGGQSGCVKI 105 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---ee------eeccCcCceeee
Confidence 488888887654 5555 55777889975443211112233334333344444444 55 999999999999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
||+....+.+.+..|...|+++.++-.. .+
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~D--------------------------------------------------ey 135 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTD--------------------------------------------------EY 135 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCc--------------------------------------------------ce
Confidence 9999888889999999999999998766 49
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCE-EEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
||+++..|.|.|..+.++..- ..|... ...|.-+.|+|..++ |.+++.+|.|.+||+.....+.....
T Consensus 136 iAsvs~gGdiiih~~~t~~~t---t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~------- 205 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKT---TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE------- 205 (673)
T ss_pred eEEeccCCcEEEEecccCccc---cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-------
Confidence 999999999999999876654 344433 335678999998775 55788899999999987766666553
Q ss_pred CCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 251 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
.|..+...++|+|.. .|++.+.|..|.+||....+....+.. ..+...++|+++|.+|++|...|.|..||++....
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 689999999999988 799999999999999998777777764 67899999999999999999999999999988764
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.+..+..|...|++++|.
T Consensus 285 ----------------Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 285 ----------------PVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred ----------------CceEeeecccceeEEEee
Confidence 678899999999999996
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=8e-19 Score=160.22 Aligned_cols=291 Identities=16% Similarity=0.165 Sum_probs=207.1
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-------E-----EEEEe-ecCceEEEEeeecCCCccceee
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-------Q-----KIVLQ-SIDFSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------~-----~~~~~-~~~~~i~~~~~s~~~~~~~~~~ 127 (817)
.-..++.|||||.- |++-+.|..+.+|++..-- . ...+. ..+..|...+|-+.-+.
T Consensus 50 nf~kgckWSPDGSc------iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s----- 118 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSC------ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKS----- 118 (406)
T ss_pred hhhccceeCCCCce------EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecccc-----
Confidence 34567889999988 9999999999999985210 0 01111 12345555555432100
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc---
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG--- 204 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--- 204 (817)
.-++..++|+.+.+.-|++||..+++.-...+ .-.|..
T Consensus 119 --------------------------------------~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~t 159 (406)
T KOG2919|consen 119 --------------------------------------DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYT 159 (406)
T ss_pred --------------------------------------CCCccceeeeccccCceeeeeccccccccchh-hhhhHHhhh
Confidence 01222589999999999999998776542222 223443
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEEC-CCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeC
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 281 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~-~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~ 281 (817)
.-.+++|+|||.+|++|.. .+|+++|+ +.|+.-..+.....+ ..+..+.+.+++|+|-. .++.|+....+-|+.-
T Consensus 160 aAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcc-cccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 3468999999999998764 59999999 667654444321111 22567899999999976 6999999999999998
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC-cccee
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRAL 359 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l 359 (817)
..+.+++.+.+|.+.|+.+.|.++|+.|++|.. |-.|.+||++.... .+..+..|.. .-..|
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----------------pv~~L~rhv~~TNQRI 301 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----------------PVYALERHVGDTNQRI 301 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----------------hhhhhhhhccCccceE
Confidence 889999999999999999999999999999877 78999999987653 4556666755 33345
Q ss_pred EeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeec
Q 003467 360 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 439 (817)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (817)
.|. ..|.++ .|++|+.||.|++||++..... ..........++
T Consensus 302 ~FD-------ld~~~~------------------------~LasG~tdG~V~vwdlk~~gn~------~sv~~~~sd~vN 344 (406)
T KOG2919|consen 302 LFD-------LDPKGE------------------------ILASGDTDGSVRVWDLKDLGNE------VSVTGNYSDTVN 344 (406)
T ss_pred EEe-------cCCCCc------------------------eeeccCCCccEEEEecCCCCCc------cccccccccccc
Confidence 443 115554 9999999999999999874421 122233456778
Q ss_pred ceeecCCeEEEEEeCCe
Q 003467 440 NTIFSHTSLLLVQYSCR 456 (817)
Q Consensus 440 ~~~~s~~~~~l~~~~~~ 456 (817)
.++++|-..++++.++.
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 89999987777777653
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4e-19 Score=162.12 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=200.4
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCCC--------CCCcEEEEEEcCCCCCcEEEEEEeecCCCCCC-CceEEEeeC
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSPG--------TSGWHCQLTVHGDPKSRISSLVWCHAGKMGLP-GGRLFSSSI 86 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~~--------~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~-~~~l~s~~~ 86 (817)
...+.|||||.-|.+-+.|..+.+|++... ........+++-.....|...+|-+.=+..+| -.+.++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456789999999999999999999998621 11111222333223467888888643211111 244788889
Q ss_pred CCeEEEEECCCCeEEEEEeecC-----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSID-----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+.-|.+||.-+|+....+.... ....+++|+|||.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------------------------- 171 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------------------------- 171 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC----------------------------------------
Confidence 9999999999999888776433 2456899999993
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEec-CCCceeEeecc----CCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCC
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSL----PRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~----~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g 235 (817)
.|. ++...+|++||+. .+.......++ .+..+-|.|++|+|-.. .++.|+....+-||+-..+
T Consensus 172 ----------qlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 172 ----------QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred ----------eEe-ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 454 4556899999995 33332222222 24577899999999665 8899999889999998888
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC-CCcEEEEeCCC-CeEEEEeecCccCe-e--EEEEecCCCEE
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRH-GTLLQAHSFHKGDV-N--ALAAAPSHNRV 309 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~-dg~i~iwd~~~-~~~~~~~~~h~~~v-~--~l~~s~~~~~l 309 (817)
+.+..+- +|.+.|+.+.|.++| .|.+|.. +-.|..||++. ..++..+..|..+- . -....|+++.|
T Consensus 241 ~pl~llg--------gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 241 RPLQLLG--------GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred Cceeeec--------ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence 8888776 799999999999999 6777664 67899999985 55677777776532 2 24557899999
Q ss_pred EEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeec
Q 003467 310 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV 363 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 363 (817)
++|+.||.|++||+..... .+..+..|+..++.+++.|
T Consensus 313 asG~tdG~V~vwdlk~~gn----------------~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGN----------------EVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred eccCCCccEEEEecCCCCC----------------cccccccccccccceecCc
Confidence 9999999999999987331 3556778888899998873
No 172
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=8.4e-19 Score=160.16 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=176.4
Q ss_pred CCeEEEEecCCCcEEEEEc-CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEc-
Q 003467 492 RKIICSTISNSGMLFAYSD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV- 569 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~- 569 (817)
..|+|.|+++|++.+|++. ...+.||.... ...|... .++..|...++.+.|+|..+.|++++.|..-+||..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~----~~~w~~~-htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLG----ADLWEPA-HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecC----CCCceec-eehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 6799999999999999974 46999999875 2233222 678888899999999999999999999999999998
Q ss_pred cCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEE---EecCCCCCeEEEEecC
Q 003467 570 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---ISRLEGASVTAAGFPP 646 (817)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~i~~l~~sp 646 (817)
..++-..++.- ..++...+++.|+|.++.+|+|+....|.||-++.....|. +.....+.|++++|+|
T Consensus 86 ~~~~WkptlvL---------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 86 SGGTWKPTLVL---------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CCCeeccceeE---------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 44444333321 11789999999999999999999999999999887765543 3344457899999999
Q ss_pred CCCCeEEEEecCCeEEEEEc------CCCccccchhcccC-ccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEE
Q 003467 647 QNNNVLIITTSSNQVYVFDV------EAKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 719 (817)
Q Consensus 647 ~d~~~l~~~~~d~~i~vwd~------~~~~~~~ws~~~~~-~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d 719 (817)
++-+|++|+.|+..+||.. +....++|..+.++ .+..++....+.+.++.|+|+|+ ..-|+..++.+++.|
T Consensus 157 -nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 157 -NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVD 234 (361)
T ss_pred -CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEee
Confidence 9999999999999999975 33467799999998 56677777789999999999853 444888888999999
Q ss_pred cCCCC
Q 003467 720 FGRPV 724 (817)
Q Consensus 720 ~~~~~ 724 (817)
...|.
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 87754
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.9e-17 Score=161.38 Aligned_cols=488 Identities=13% Similarity=0.106 Sum_probs=285.9
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEe-cCCCCCCcEEEEEEcCCCCCcEEEEEEeecCC-CCCCCceEEEeeCCC
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWL-VSPGTSGWHCQLTVHGDPKSRISSLVWCHAGK-MGLPGGRLFSSSIDG 88 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd-~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~-~~~~~~~l~s~~~d~ 88 (817)
-|..-|.|+.++.....+.++.. ..+.+|+ +.+... .+..++.. .--+.+-.-+-+. .+.....++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~---~~~~~p~d--f~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSV---EVAKLPDD--FVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccC-ceEEEeecccchhh---hhhhCCcc--cCCccccccccccCCCCCcceEEEEcCCc
Confidence 56677889999988877766654 5555554 443321 11122211 1111111111100 011124588888999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.+.+-+ ..++.......|.+.|.+-.|+|||
T Consensus 86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG------------------------------------------------ 116 (737)
T KOG1524|consen 86 RFVILN-KSARVERSISAHAAAISSGRWSPDG------------------------------------------------ 116 (737)
T ss_pred eEEEec-ccchhhhhhhhhhhhhhhcccCCCC------------------------------------------------
Confidence 998887 5677788899999999999999999
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.-|+++++||.|+||.-. |..- .++......|.|++|.|+...++.+..+ .+.|=.+.....+.+..
T Consensus 117 --tgLlt~GEDG~iKiWSrs-GMLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~Wk------ 183 (737)
T KOG1524|consen 117 --AGLLTAGEDGVIKIWSRS-GMLR---STVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWR------ 183 (737)
T ss_pred --ceeeeecCCceEEEEecc-chHH---HHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEe------
Confidence 479999999999999864 3221 4455667799999999998887776544 67776666666666666
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|.+.|.++.|++.. .+++|++|-..++||.. |+.+..-..|..+|++++|+|+ +.++.++.. +.++=
T Consensus 184 --AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~------ 252 (737)
T KOG1524|consen 184 --AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS------ 252 (737)
T ss_pred --ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeeec------
Confidence 699999999999988 79999999999999987 8888888899999999999999 444444332 44421
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
....+.|..++|+ +||. .++.|...
T Consensus 253 ----------------------~p~~GSifnlsWS---------~DGT------------------------Q~a~gt~~ 277 (737)
T KOG1524|consen 253 ----------------------SPRVGSIFNLSWS---------ADGT------------------------QATCGTST 277 (737)
T ss_pred ----------------------CCCccceEEEEEc---------CCCc------------------------eeeccccC
Confidence 2334568889998 8886 77777777
Q ss_pred CeEEEEeCCccc-ccCCcccCCCCC-----CC----------ceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccC
Q 003467 408 TKLFAYCANEFT-KFSPHEICPAPQ-----RV----------PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 471 (817)
Q Consensus 408 g~i~~~~~~~~~-~~~~~~~~~~~~-----~~----------~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~ 471 (817)
|.+.+--.-+.. ..........+. +. ..+.+...++.- +.+++..+..+.++.-...+..
T Consensus 278 G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL~Y-~hLvvaTs~qvyiys~knwntp--- 353 (737)
T KOG1524|consen 278 GQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSLGY-GHLVVATSLQVYIYSEKNWNTP--- 353 (737)
T ss_pred ceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeeece-eEEEEEeccEEEEEecCCccCc---
Confidence 766543322111 000000000000 00 001111111111 2233333344444432222110
Q ss_pred CCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCcccc-ceeEEEEec
Q 003467 472 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ-FAHSMIFSY 550 (817)
Q Consensus 472 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~fsp 550 (817)
.+ +. ....-..+ +-...+++.+.+...+.+|..+. ...|. ..+|+... ..+.-..|-
T Consensus 354 ----------ii--id--gre~tr~l-ieq~ek~fli~dgsSi~lytyeg----R~~~n---p~~Pg~~~dlL~~rtlsL 411 (737)
T KOG1524|consen 354 ----------II--ID--GREDTRNL-IEQGEKYFLILDGSSIWLYTYEG----RLHLN---PRYPGSQIDLLTWRTLSL 411 (737)
T ss_pred ----------EE--Ee--ccccchhH-hhhhhhheEEecCcEEEEEEecC----ceecC---CCCCCcccccccceeeec
Confidence 00 00 00000000 00111344455556666666542 22222 12232211 111112222
Q ss_pred CCCEEEEEec--CCcEEEEEc-cCCceeeeeccCcccccccCCCCCCceeEEEE----ccCCCEEEEEeCCCcEEEEECC
Q 003467 551 DSSQLIIAGH--DRRIYVVDV-SSSELLHTFTPCREEHDREIQPSEPPITKMFT----SSDGQWLAAVNCFGDVYIFNLE 623 (817)
Q Consensus 551 d~~~l~~~~~--dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----s~dg~~la~~~~dg~i~vwd~~ 623 (817)
-...|+.-.. ...+.+||. .+|+... +..+-.|...|..++. .++.+.+|.-+..+.++|=.+.
T Consensus 412 andtLaird~ad~kvlhlFd~istgk~qg---------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK 482 (737)
T KOG1524|consen 412 ANDTLAIRDNADPKVLHLFDLISTGKRQG---------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK 482 (737)
T ss_pred ccceEEeecCCCCeeEEeccCCCCCcccC---------CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh
Confidence 2334444322 334667776 4554432 1122236667766665 3466788999999988888776
Q ss_pred CcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 624 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 624 ~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
+......+.+. +..|..++|+. -.-++++-.|+.+.||=..+..
T Consensus 483 rfgkee~I~Ki-GTmVhtLawnd--ttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 483 RFGKEEEIYKI-GTMVHTLAWND--TTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hcCchhhhhhh-hhhhhhhhhcc--ccceeeeeccceEEEEEcCCcc
Confidence 55433333232 35789999995 4457789999999999887654
No 174
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.82 E-value=9.5e-19 Score=160.01 Aligned_cols=398 Identities=14% Similarity=0.164 Sum_probs=251.0
Q ss_pred EEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCC
Q 003467 66 LVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDS 145 (817)
Q Consensus 66 l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (817)
.+|||+|++ +|+++.- .+.+-|.++.+..+.+.. -..|..+.|..|...
T Consensus 14 c~fSp~g~y------iAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~----------------------- 62 (447)
T KOG4497|consen 14 CSFSPCGNY------IASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH----------------------- 62 (447)
T ss_pred eeECCCCCe------eeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeecccee-----------------------
Confidence 579999999 9998866 788888887665444332 345677888877632
Q ss_pred CCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEE-EeeCC
Q 003467 146 DDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSD 224 (817)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~-s~~~d 224 (817)
.|.....++.|.+|++...+-. ..+......+.+++|||||+.|+ +..-|
T Consensus 63 --------------------------ilC~~yk~~~vqvwsl~Qpew~---ckIdeg~agls~~~WSPdgrhiL~tseF~ 113 (447)
T KOG4497|consen 63 --------------------------ILCVAYKDPKVQVWSLVQPEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFD 113 (447)
T ss_pred --------------------------eeeeeeccceEEEEEeecceeE---EEeccCCCcceeeeECCCcceEeeeecce
Confidence 5667788999999999744333 56667778899999999997655 45558
Q ss_pred CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCc----EEEEeCCCCeEEEEeecCccCeeEE
Q 003467 225 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS----VQFWDSRHGTLLQAHSFHKGDVNAL 300 (817)
Q Consensus 225 g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~----i~iwd~~~~~~~~~~~~h~~~v~~l 300 (817)
-.|.+|.+.+.+....- .....+-.++|.|||++++-.+... +.+..-+...++..+...+-+.+.+
T Consensus 114 lriTVWSL~t~~~~~~~---------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgi 184 (447)
T KOG4497|consen 114 LRITVWSLNTQKGYLLP---------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGI 184 (447)
T ss_pred eEEEEEEeccceeEEec---------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCc
Confidence 89999999776554332 2445668899999997655433221 2333333345566777778888999
Q ss_pred EEecCCCEEEEEcc--CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccc
Q 003467 301 AAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 378 (817)
Q Consensus 301 ~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 378 (817)
.|+|||+.|++-.. +-.|..|... -.+..++++ |.++
T Consensus 185 eWsPdg~~laVwd~~Leykv~aYe~~-----------------------------lG~k~v~ws---------P~~q--- 223 (447)
T KOG4497|consen 185 EWSPDGNWLAVWDNVLEYKVYAYERG-----------------------------LGLKFVEWS---------PCNQ--- 223 (447)
T ss_pred eECCCCcEEEEecchhhheeeeeeec-----------------------------cceeEEEec---------cccc---
Confidence 99999998876422 2233333221 236667776 6665
Q ss_pred ccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEE
Q 003467 379 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~ 458 (817)
+|+.|+.|+.+++-+--+.+.+...........+....+..-.+++
T Consensus 224 ---------------------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~------------- 269 (447)
T KOG4497|consen 224 ---------------------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI------------- 269 (447)
T ss_pred ---------------------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch-------------
Confidence 9999999999998766554433221100000000000000000000
Q ss_pred EEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEee----e
Q 003467 459 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK----R 534 (817)
Q Consensus 459 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~----~ 534 (817)
.+....|+.|.|..--.-.... .-.+|+... ...+ +.+ .
T Consensus 270 -------------------------------~ql~~~cLsf~p~~~~a~~~~~-se~~YE~~~--~pv~---~~~lkp~t 312 (447)
T KOG4497|consen 270 -------------------------------VQLLHHCLSFTPTDLEAHIWEE-SETIYEQQM--TPVK---VHKLKPPT 312 (447)
T ss_pred -------------------------------hhhcccccccCCCccccCcccc-chhhhhhhh--ccee---eecccCCC
Confidence 0001112222221100000000 000121111 0000 111 1
Q ss_pred cCCccccceeEEEEecCCCEEEEEec--CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe
Q 003467 535 QLPRKLQFAHSMIFSYDSSQLIIAGH--DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 612 (817)
Q Consensus 535 ~~~~~~~~i~~~~fspd~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 612 (817)
..+.....+..++||+|..++++-.. -..+.+||+...++-..+. ...+|....|.|....|+...
T Consensus 313 D~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi------------Qk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred CCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh------------hccceeEEEeCCCCceEEEEc
Confidence 22233447889999999999998764 3579999998777666666 477899999999999999998
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 613 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 613 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
....+++|......... .|. .+..|..+.|.- +|..++..+.|.
T Consensus 381 g~srLY~W~psg~~~V~-vP~-~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPRVVG-VPK-KGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred CCceEEEEcCCCceEEe-cCC-CCceeeeEEecC-CCcEEEEEcCCc
Confidence 88889999988755432 332 346899999999 999999999887
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.4e-18 Score=156.07 Aligned_cols=251 Identities=20% Similarity=0.313 Sum_probs=186.2
Q ss_pred eeccCCCceEEEEECC-CCCeEEEEecC-------CcEEEEecCCCCC-----CcEEEEEEcCCCCCcEEEEEEeecCCC
Q 003467 8 SIDWKPSPVVALATSA-DDSQVAAARED-------GSLEIWLVSPGTS-----GWHCQLTVHGDPKSRISSLVWCHAGKM 74 (817)
Q Consensus 8 ~~~~h~~~I~~la~sp-dg~~la~~~~d-------g~i~iwd~~~~~~-----~~~~~~~~~g~~~~~V~~l~~s~~~~~ 74 (817)
-|.-|++.|..|+-+| |.+.||++..+ -.+.||.+..... .+.++..+...+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 3567889999999999 56677777542 2478999875432 245566666434579999999999987
Q ss_pred CCCCceEEEeeCCCeEEEEECCCCeE-EEEEe-----ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCc
Q 003467 75 GLPGGRLFSSSIDGSVSEWDLYDLKQ-KIVLQ-----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDH 148 (817)
Q Consensus 75 ~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~-----~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (817)
|++-. |..|.+|+++.+.. ...+. .+.....+-+|+|..+.
T Consensus 138 ------lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-------------------------- 184 (370)
T KOG1007|consen 138 ------LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-------------------------- 184 (370)
T ss_pred ------eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--------------------------
Confidence 88776 77899999988765 33332 23445666777774321
Q ss_pred cccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcE
Q 003467 149 ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYI 227 (817)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i 227 (817)
+.++ ...|+++..||+++..+.. ..-..|...|..+.|+|+-+ +|++|+.||.|
T Consensus 185 ----------------------nqv~-tt~d~tl~~~D~RT~~~~~--sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyv 239 (370)
T KOG1007|consen 185 ----------------------NQVA-TTSDSTLQFWDLRTMKKNN--SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYV 239 (370)
T ss_pred ----------------------ceEE-EeCCCcEEEEEccchhhhc--chhhhhcceeeeccCCCCceEEEEEcCCCccE
Confidence 2444 4557899999998655442 44567889999999999876 57899999999
Q ss_pred EEEECCCCc-eEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC---------------------
Q 003467 228 RSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH--------------------- 283 (817)
Q Consensus 228 ~vwd~~~g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~--------------------- 283 (817)
++||.+.-+ .+..+. +|...||++.|.|.. .+++|++|..|.+|...+
T Consensus 240 riWD~R~tk~pv~el~--------~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds 311 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELP--------GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS 311 (370)
T ss_pred EEEeccCCCccccccC--------CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence 999998543 455555 799999999999865 799999999999996432
Q ss_pred --------CeEEEEeecCccCeeEEEEecCCCEEE-EEccCCcEEEEEee
Q 003467 284 --------GTLLQAHSFHKGDVNALAAAPSHNRVF-STGSDGQVILYKAS 324 (817)
Q Consensus 284 --------~~~~~~~~~h~~~v~~l~~s~~~~~l~-~~~~dg~i~iw~~~ 324 (817)
...+.++..|...|++++||.-..++| +-+.||.+.|=++.
T Consensus 312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 113456788999999999998766655 56889999876554
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.4e-17 Score=152.30 Aligned_cols=247 Identities=16% Similarity=0.249 Sum_probs=193.1
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
|.+|...++ ..+|+|.||++|+..+|++..+..|.||.....+ .|...+++..| ...|+++.|+|..+.
T Consensus 1 ~~~~~~~~~---~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~H-d~~vtgvdWap~snr------ 69 (361)
T KOG1523|consen 1 MAVVVFHRL---LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEH-DKIVTGVDWAPKSNR------ 69 (361)
T ss_pred CceEEeeec---cCceeeeeecCCCceEEeccCCceEEEEEecCCC-Cceeceehhhh-CcceeEEeecCCCCc------
Confidence 455554443 6789999999999999999999999999988765 58888999988 899999999999854
Q ss_pred EEEeeCCCeEEEEEC-CCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 81 LFSSSIDGSVSEWDL-YDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 81 l~s~~~d~~i~vwd~-~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
|++++.|..-.||.. ..++ +...+..+.....++.|+|.+
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e------------------------------------- 112 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE------------------------------------- 112 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-------------------------------------
Confidence 999999999999998 4443 445566789999999999998
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCce-eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC--
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-- 234 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-- 234 (817)
+.+|+|+....|.||-++..+.. .....-..+...|++++|+|++-+|++|+.|+..||+..--
T Consensus 113 -------------nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 113 -------------NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred -------------ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence 59999999999999988744433 22234456788999999999999999999999999997421
Q ss_pred ----------------CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCe-EEEEeecCccC
Q 003467 235 ----------------GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-LLQAHSFHKGD 296 (817)
Q Consensus 235 ----------------g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~ 296 (817)
|+.+.++. ...+.+..+.|+|+| .|+-.+.|.++.+=|..... .++......-+
T Consensus 180 Vdekpap~pWgsk~PFG~lm~E~~--------~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP 251 (361)
T KOG1523|consen 180 VDEKPAPTPWGSKMPFGQLMSEAS--------SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLP 251 (361)
T ss_pred cccCCCCCCCccCCcHHHHHHhhc--------cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCC
Confidence 11122221 466789999999999 89999999999999987553 45555544577
Q ss_pred eeEEEEecCCCEEEEEccCCc
Q 003467 297 VNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~~~dg~ 317 (817)
.+++.|-.+. .++.++.|..
T Consensus 252 ~ls~~~ise~-~vv~ag~~c~ 271 (361)
T KOG1523|consen 252 LLSVSWISEN-SVVAAGYDCG 271 (361)
T ss_pred ceeeEeecCC-ceeecCCCCC
Confidence 7777776544 3555555533
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=3.1e-18 Score=160.64 Aligned_cols=232 Identities=16% Similarity=0.229 Sum_probs=177.8
Q ss_pred eeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCC---CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 7 SSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTS---GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
-++.+|.++|..++|+| +...||+|++|.+|.||++..+-. .......+.|| ...|--++|+|... +.|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~wHPtA~-----NVLl 148 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQWHPTAP-----NVLL 148 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEeecccch-----hhHh
Confidence 36789999999999999 677899999999999999875432 22346778888 89999999999865 4699
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
|+|.|.+|.+||+.+|+.+.+++ |..-|+++.|+.+|
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG------------------------------------------ 185 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG------------------------------------------ 185 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC------------------------------------------
Confidence 99999999999999999999998 99999999999999
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc-eEEEEEEccCCCEEEEee---CCCcEEEEECCCCceE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG-RVLSVTWSADGNMLYSGS---SDGYIRSWDAKLGYEI 238 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~s~dg~~l~s~~---~dg~i~vwd~~~g~~~ 238 (817)
.+++++|.|..|||||..++..+ ..-.+|.+ +-..+.|-.+|..+-||- ++..+-+||..+-+..
T Consensus 186 --------s~l~TtckDKkvRv~dpr~~~~v---~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 186 --------SLLCTTCKDKKVRVIDPRRGTVV---SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred --------ceeeeecccceeEEEcCCCCcEe---eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 59999999999999999877665 34466765 445566888898665554 3678999997665443
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeE----EEEeecCccCeeEEEEecC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL----LQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~s~~ 305 (817)
..+..- .....|.--.|.+|. ..++|-.|+.|+.|.+....+ +.+++. ..+-..+.|-|.
T Consensus 255 ~~~~el------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQRG~g~mPK 320 (472)
T KOG0303|consen 255 IALQEL------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQRGMGFMPK 320 (472)
T ss_pred ceeEEe------ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-CCcccccccccc
Confidence 222211 355667666777777 468899999999999986543 223322 234445555553
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=7.9e-18 Score=157.95 Aligned_cols=206 Identities=19% Similarity=0.289 Sum_probs=166.8
Q ss_pred EEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC-------eEEEEEeecCceEEEEeeecCCCcccee
Q 003467 54 TVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL-------KQKIVLQSIDFSIWQMAVAPSNSSLMHA 126 (817)
Q Consensus 54 ~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~~~~~ 126 (817)
...|| .+.|..++|+|.++. +|||||.|.+|.||.+..+ +++..+.+|...|--++|+|...
T Consensus 76 ~v~GH-t~~vLDi~w~PfnD~-----vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~----- 144 (472)
T KOG0303|consen 76 LVCGH-TAPVLDIDWCPFNDC-----VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP----- 144 (472)
T ss_pred CccCc-cccccccccCccCCc-----eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-----
Confidence 34455 899999999998763 6999999999999998643 45678899999999999999875
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceE
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV 206 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 206 (817)
+.|++++.|..|.||++.+++.+ .++. |...|
T Consensus 145 --------------------------------------------NVLlsag~Dn~v~iWnv~tgeal---i~l~-hpd~i 176 (472)
T KOG0303|consen 145 --------------------------------------------NVLLSAGSDNTVSIWNVGTGEAL---ITLD-HPDMV 176 (472)
T ss_pred --------------------------------------------hhHhhccCCceEEEEeccCCcee---eecC-CCCeE
Confidence 38999999999999999988877 4455 99999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc-eeEEEeEEecCCeEEEEc----CCCcEEEEeC
Q 003467 207 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCGTLVSAD----STGSVQFWDS 281 (817)
Q Consensus 207 ~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~s~~----~dg~i~iwd~ 281 (817)
.++.|+-||.+|++.+.|..|||||.++|+.+..-. .|+ ..-..+.|..+|.+++.+ ++..+-+||.
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCCcEeeecc--------cccCCCcceeEEeccCceeeeccccccccceeccCc
Confidence 999999999999999999999999999999988774 233 234456677888766654 4667999997
Q ss_pred CCCe---EEEEeecCccCeeEEEEecCCCEEEEEcc-CCcEEEEEeeccc
Q 003467 282 RHGT---LLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCES 327 (817)
Q Consensus 282 ~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~ 327 (817)
..-. ..+.+.. ...|.---+.+|.+.++.+|. |+.|+-|.+....
T Consensus 249 ~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 249 NNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 7533 2344443 556777888999998886665 9999999988765
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.9e-19 Score=172.25 Aligned_cols=257 Identities=22% Similarity=0.323 Sum_probs=191.3
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCC----CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSP----GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~----~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
+..|-+.|++++|.|....|++|+.||.|.+|++.. .........++.+| .++|.|++.+++++. +++|
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~~------~ysg 362 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGEH------CYSG 362 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCceE------EEee
Confidence 367889999999999999999999999999999932 11234567889998 899999999999988 9999
Q ss_pred eCCCeEEEEECCC----------CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 85 SIDGSVSEWDLYD----------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 85 ~~d~~i~vwd~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
|.||+|+.|++.. ......+.||...||.+++++..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~---------------------------------- 408 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK---------------------------------- 408 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc----------------------------------
Confidence 9999999996641 12336778999999999999987
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc--cceEEEEEEccCC-CEEEEeeCCCcEEEEE
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV--SGRVLSVTWSADG-NMLYSGSSDGYIRSWD 231 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd 231 (817)
..|++++.||++++|+...... .++..- .+--+++.+-... .+.++...-+.--+.+
T Consensus 409 ----------------~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~ 468 (577)
T KOG0642|consen 409 ----------------DRLLSCSSDGTVRLWEPTEESP----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDD 468 (577)
T ss_pred ----------------cceeeecCCceEEeeccCCcCc----cccCCccccCCcceEeeccchhHhhhhhcccccccchh
Confidence 4899999999999999874433 222221 2334555554322 1222222222333334
Q ss_pred CCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEE
Q 003467 232 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
...+..+..+.....+ .......+.-+...|++ ..+++..++.|+++|..++.++.....|...++++++.|+|-+|+
T Consensus 469 ~ev~s~~~~~~s~~~~-~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 469 MEVVSDLLIFESSASP-GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhhhheeeccccCCC-cccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence 4444444433321111 11122445666677777 789999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEeeccc
Q 003467 311 STGSDGQVILYKASCES 327 (817)
Q Consensus 311 ~~~~dg~i~iw~~~~~~ 327 (817)
+++.|+.+++|.+....
T Consensus 548 s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eecCCceeehhhccchh
Confidence 99999999999987765
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=155.88 Aligned_cols=316 Identities=13% Similarity=0.138 Sum_probs=218.8
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCC--CCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGT--SGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
+.+|.+-|++|.||.++++||+|+.|-.+.+|++...- ..+..+.....||...|-||+|.....+ |++|+.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~------~~SG~~ 125 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF------LYSGER 125 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee------EecCCC
Confidence 36899999999999999999999999999999986311 0111244445566799999999999888 999999
Q ss_pred CCeEEEEECCCCeEEEEEeec--CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+++|..-|+++.+.+..+... .+.|+.|..+|-.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-------------------------------------------- 161 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-------------------------------------------- 161 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC--------------------------------------------
Confidence 999999999998888776532 3589999999975
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCce-EEEEE
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYE-IYRIT 242 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~-~~~~~ 242 (817)
+.+++.+.++.|.+||............+.........+.|+|... +|++.+..+-+-+||.+..+. +....
T Consensus 162 ------N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~ 235 (609)
T KOG4227|consen 162 ------NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS 235 (609)
T ss_pred ------ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh
Confidence 4899999999999999985432111122223345677889999764 677888889999999864321 11111
Q ss_pred eecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-------cCeeEEEEecCCCEEEEEcc
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-------GDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~~~~~ 314 (817)
... + .......-.++.|+|+| +|++--....-.+||+-+.++...-..|. ..+.+++|..|- .+++|+.
T Consensus 236 ~~~-~-L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD 312 (609)
T KOG4227|consen 236 MFK-G-LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD 312 (609)
T ss_pred ccc-c-CcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc
Confidence 000 0 00112233578899999 67777666667788887654432222222 346778887554 4999999
Q ss_pred CCcEEEEEeecccCCCC-CCCC--Cccccce-E--EEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccc
Q 003467 315 DGQVILYKASCESIGPN-DGLS--SSEVIKK-W--IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 388 (817)
Q Consensus 315 dg~i~iw~~~~~~~~~~-~~~~--~~~~~~~-~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
+=.|++|.+........ ..+- ..+.... . ..+..+++|..-+..+.|+ |..
T Consensus 313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~---------~H~-------------- 369 (609)
T KOG4227|consen 313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS---------QHN-------------- 369 (609)
T ss_pred ccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec---------CCc--------------
Confidence 99999999875432111 0000 0000000 1 1345678998888888886 433
Q ss_pred cccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 389 SYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 389 ~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
.+|++.|....+++|..-
T Consensus 370 ----------~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 370 ----------NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ----------ceEeccchhhheeccccc
Confidence 399999999999999754
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=3e-17 Score=159.93 Aligned_cols=213 Identities=22% Similarity=0.292 Sum_probs=166.8
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ 105 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 105 (817)
..++.++.||.+.|-+-.. + .+..+..| .++|.+-.|+|||.- |+++|.||.|++|. .+|-...++.
T Consensus 76 d~~~i~s~DGkf~il~k~~-r----VE~sv~AH-~~A~~~gRW~~dGtg------Llt~GEDG~iKiWS-rsGMLRStl~ 142 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-R----VERSISAH-AAAISSGRWSPDGAG------LLTAGEDGVIKIWS-RSGMLRSTVV 142 (737)
T ss_pred ceEEEEcCCceEEEecccc-h----hhhhhhhh-hhhhhhcccCCCCce------eeeecCCceEEEEe-ccchHHHHHh
Confidence 4688889999999988544 3 36677777 799999999999997 99999999999999 5666666777
Q ss_pred ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEE
Q 003467 106 SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIY 185 (817)
Q Consensus 106 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 185 (817)
..+.+|+|++|.|++.. .+. |..+.+.|=
T Consensus 143 Q~~~~v~c~~W~p~S~~-------------------------------------------------vl~--c~g~h~~IK 171 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNS-------------------------------------------------IVF--CQGGHISIK 171 (737)
T ss_pred hcCceeEEEEECCCCCc-------------------------------------------------eEE--ecCCeEEEe
Confidence 78899999999999853 233 334566666
Q ss_pred EecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC
Q 003467 186 RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 265 (817)
Q Consensus 186 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 265 (817)
.+.-...+ -..+.|.+-|.++.|++..+.+++|+.|-..++||. .|+.+..-. .|+.+|++++|.|+.
T Consensus 172 pL~~n~k~---i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~--------~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 172 PLAANSKI---IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSA--------AEEYAITSVAFNPEK 239 (737)
T ss_pred ecccccce---eEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCC--------hhccceeeeeecccc
Confidence 66533333 566789999999999999999999999999999996 477776655 699999999999996
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 266 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
.++.++.. +++ --+...+.|..++||+||..+++|...|.+.+=..-..
T Consensus 240 ~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 240 DYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ 288 (737)
T ss_pred ceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEeeeehh
Confidence 55554432 233 11234678999999999999999999998876554443
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.7e-18 Score=152.38 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=193.1
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcE
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSV 276 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i 276 (817)
..+++|.+.|+++.|..+++ |.+|..-|.|++|++++.+....+.. .+...|..+...|++.+.+-+.|+.+
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~d~l~tqgRd~~L 79 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPNDSLDTQGRDPLL 79 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCCcchhhcCCCceE
Confidence 56679999999999998765 99999999999999999888777763 47788999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC-cEEEEEeecccCCCCCCCCCccccce-EEEe--eccccC
Q 003467 277 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSSSEVIKK-WIYV--GSVRAH 352 (817)
Q Consensus 277 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~h 352 (817)
.+|++..+..+.. |.-.+.++.|.+.. +...+... ....|.-+....... .+.... -+++ ..-...
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~-----~D~g~~tqv~i~dd~~~~K 149 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHK-----QDGGDTTQVQIADDSERSK 149 (323)
T ss_pred EEEEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhh-----hccCccceeEccCchhccc
Confidence 9999986554332 33344455554321 22221111 111111111000000 000000 0000 000111
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
.+.+.+..+. .......+|+.|.++|.+.+||+.+.......+ +.
T Consensus 150 lgsvmc~~~~------------------------------~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-----~~ 194 (323)
T KOG0322|consen 150 LGSVMCQDKD------------------------------HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-----QS 194 (323)
T ss_pred cCceeeeecc------------------------------ccccceEEEEEeccCCeEEEEEccCCceeeccc-----cc
Confidence 1222222210 111223478889999999999998754222111 00
Q ss_pred CceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcE-EEEEcC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDH 511 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~~~ 511 (817)
|. +..-...+...+.++.+.+.-.. +.-+.+
T Consensus 195 ---------------------------~k---------------------v~~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 195 ---------------------------SK---------------------VESPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred ---------------------------cc---------------------cccchhhccCcceeeeechhhcCCcCCCcc
Confidence 00 00001112244555555432222 222345
Q ss_pred CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 512 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 512 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
..+..|.++.......+ + .+..-....+..+.+-||++.+|+++.|+.|+||...+...+..++.
T Consensus 227 dkl~~~Sl~~s~gslq~---~-~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------- 291 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQI---R-KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------- 291 (323)
T ss_pred ccceeeeeccccCcccc---c-ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-----------
Confidence 66777777652222221 1 11222234688899999999999999999999999999999999998
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
|.+.|++++||||...+|+++.|++|.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999999986
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.7e-17 Score=160.72 Aligned_cols=126 Identities=24% Similarity=0.360 Sum_probs=111.9
Q ss_pred EeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC---eEEEEc
Q 003467 195 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSAD 271 (817)
Q Consensus 195 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~s~~ 271 (817)
+...|.||++-|.|++|+.||.+|++|+.|-.+.|||....+.+..+.. +|...|.++.|.|.. .+++|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEecc
Confidence 3478999999999999999999999999999999999998888888885 799999999999854 789999
Q ss_pred CCCcEEEEeCCC----------CeEEEEeecCccCeeEEEEecCC-CEEEEEccCCcEEEEEeeccc
Q 003467 272 STGSVQFWDSRH----------GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 272 ~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|..|+++|+.. ......+..|...|..|+..|++ +.+.+++.||+|+.+|+....
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 999999999984 23345567899999999999999 778899999999999998754
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.4e-19 Score=187.96 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=195.4
Q ss_pred CceEEEEECCCCCe----EEEEecCCcEEEEecCCC--CCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 14 SPVVALATSADDSQ----VAAAREDGSLEIWLVSPG--TSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 14 ~~I~~la~spdg~~----la~~~~dg~i~iwd~~~~--~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
..-+.|+|++.|.. ||.|.+||.|.+||...- ........+...| .+.|.+|.|++... +.||+|+.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h-~G~V~gLDfN~~q~-----nlLASGa~~ 138 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH-TGPVLGLDFNPFQG-----NLLASGADD 138 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc-CCceeeeeccccCC-----ceeeccCCC
Confidence 34578899887766 899999999999998762 1111234455555 79999999999876 239999999
Q ss_pred CeEEEEECCCCeEEEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
|.|.+||+...+.-.+... ....|.+++|+..-.
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq-------------------------------------------- 174 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS-------------------------------------------- 174 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh--------------------------------------------
Confidence 9999999988655444422 357899999987653
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc--ceEEEEEEccCCC-EEEEeeCC---CcEEEEECCCCc-eE
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS--GRVLSVTWSADGN-MLYSGSSD---GYIRSWDAKLGY-EI 238 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~dg~-~l~s~~~d---g~i~vwd~~~g~-~~ 238 (817)
..||+++.+|.+.|||++..+.+ -.+..|. ..+..++|+|+.. .|++++.| -.|.+||++.-. .+
T Consensus 175 -----hILAS~s~sg~~~iWDlr~~~pi---i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 175 -----HILASGSPSGRAVIWDLRKKKPI---IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred -----HHhhccCCCCCceeccccCCCcc---cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 37999999999999999855444 3333333 4578999999874 56666654 469999987543 34
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC-EEEEEccC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSD 315 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~d 315 (817)
+.++ +|+..|.++.|.+.+ .+++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++.|
T Consensus 247 k~~~--------~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 247 KILE--------GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred hhhc--------ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheec
Confidence 4444 799999999999877 799999999999999999999999998889999999999775 67778899
Q ss_pred CcEEEEEeeccc
Q 003467 316 GQVILYKASCES 327 (817)
Q Consensus 316 g~i~iw~~~~~~ 327 (817)
|.|.||.+.+..
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999998765
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3e-16 Score=137.69 Aligned_cols=244 Identities=19% Similarity=0.184 Sum_probs=175.6
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCC---C---CCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPG---T---SGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~---~---~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
.|.+-|+||.+++|++|..+|+|.+..+.+. . +........++| +++|..++|.. .+ |++++ ||
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah-dgpiy~~~f~d--~~------Lls~g-dG 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH-DGPIYYLAFHD--DF------LLSGG-DG 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecccc-CCCeeeeeeeh--hh------eeecc-Cc
Confidence 4666789999999999999999999987621 1 111123444666 89999999983 33 77766 59
Q ss_pred eEEEEECCCCeE------EEEE--ee-----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 89 SVSEWDLYDLKQ------KIVL--QS-----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 89 ~i~vwd~~~~~~------~~~~--~~-----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
.|+-|.+..... +... .. .-..|.+|-..|..
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e----------------------------------- 126 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE----------------------------------- 126 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-----------------------------------
Confidence 999999864322 1000 11 12456677777665
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g 235 (817)
+.++.++.|+.++-||++++.-. +.+++|++-|.+++--.....+++|+.||++|+||.+++
T Consensus 127 ---------------nSi~~AgGD~~~y~~dlE~G~i~---r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 127 ---------------NSILFAGGDGVIYQVDLEDGRIQ---REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ---------------CcEEEecCCeEEEEEEecCCEEE---EEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc
Confidence 35666669999999999977554 899999999999998666678999999999999999999
Q ss_pred ceEEEEEeecCCC-CC-CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc
Q 003467 236 YEIYRITVGLGGL-GS-GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 236 ~~~~~~~~~~~~~-~~-~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~ 313 (817)
+++..+..-.... .+ .....|-+++.+.| .+++|+ ...+.+|.+++.++.+.+.- .+.+..+.|.. +.++++|
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G 263 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFVD--DCVLIGG 263 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCceEEEec-ccceeEeeeec--ceEEEec
Confidence 9998886432211 11 23345556554322 555554 45699999999888877764 56777788864 4588888
Q ss_pred cCCcEEEEEeecc
Q 003467 314 SDGQVILYKASCE 326 (817)
Q Consensus 314 ~dg~i~iw~~~~~ 326 (817)
..+.|..|.+...
T Consensus 264 ~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 264 EGNHVQSYTLNGV 276 (325)
T ss_pred cccceeeeeeccE
Confidence 8889999988763
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=154.00 Aligned_cols=280 Identities=15% Similarity=0.191 Sum_probs=191.4
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ 105 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 105 (817)
..+|++-.+|.|++||..+++ ....+.++ ...+..+.|..+..- ..+.+++.||+|++||+.+......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----~l~~fk~~-~~~~N~vrf~~~ds~----h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----LLEEFKGP-PATTNGVRFISCDSP----HGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----hhheecCC-CCcccceEEecCCCC----CeeEEeccCCeEEEEEeecchhhhhee
Confidence 569999999999999999987 46677777 688999999875322 448999999999999998766554433
Q ss_pred --ecC-ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC----
Q 003467 106 --SID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD---- 178 (817)
Q Consensus 106 --~~~-~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 178 (817)
.+. .+..+++.+-.+ +.+++|.+
T Consensus 112 ~~~~~~~~f~~ld~nck~--------------------------------------------------~ii~~GtE~~~s 141 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKK--------------------------------------------------NIIACGTELTRS 141 (376)
T ss_pred ccCCCCCcceEeeccCcC--------------------------------------------------CeEEeccccccC
Confidence 333 345555555333 36666653
Q ss_pred CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEE
Q 003467 179 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 257 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~ 257 (817)
+-.|.+||++..+++ ...-...|...|+++.|+|.. ++|++|+.||.|.++|+.....-..+.. ...+...|.
T Consensus 142 ~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----viN~~sSI~ 215 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----VINHGSSIH 215 (376)
T ss_pred ceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----hhcccceee
Confidence 678999999865552 113345799999999999964 6899999999999999875432111110 014778899
Q ss_pred EeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCc-------------cCeeEEEEecCCCEEEEEcc-CCcEEEE
Q 003467 258 SLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHK-------------GDVNALAAAPSHNRVFSTGS-DGQVILY 321 (817)
Q Consensus 258 ~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-------------~~v~~l~~s~~~~~l~~~~~-dg~i~iw 321 (817)
.+.|+.++ +|.+-+..++..+|+++.+.....+.... .-|.+.. ..++...+.++. -+...++
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~ 294 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIF 294 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCCcceEEEeccccCceeEE
Confidence 99999999 79999999999999999887654443210 0111111 123344454444 6666666
Q ss_pred EeecccCCCCCCCCCccccceEEEeecccc-CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
-+....... ..+.+..+.+ |..-|+++.|. . ...+
T Consensus 295 ~~~~~~s~~-----------~~~~~a~l~g~~~eiVR~i~~~---------~------------------------~~~~ 330 (376)
T KOG1188|consen 295 PLVDTSSGS-----------LLTEPAILQGGHEEIVRDILFD---------V------------------------KNDV 330 (376)
T ss_pred Eeeeccccc-----------ccCccccccCCcHHHHHHHhhh---------c------------------------ccce
Confidence 665322110 0113344554 66678888773 1 2249
Q ss_pred EEEecCCCeEEEEeC
Q 003467 401 LISAGDDTKLFAYCA 415 (817)
Q Consensus 401 l~s~~~dg~i~~~~~ 415 (817)
+.+||+||.+.+|..
T Consensus 331 l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKV 345 (376)
T ss_pred eeccCCCceEEEEec
Confidence 999999999999985
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=4.1e-17 Score=146.80 Aligned_cols=232 Identities=22% Similarity=0.297 Sum_probs=173.9
Q ss_pred CCCeEEEEECCCCeE---EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 86 IDGSVSEWDLYDLKQ---KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
.|+.|.+-+++.+.- ...+..|.+.||.++-+|....
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~---------------------------------------- 77 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR---------------------------------------- 77 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc----------------------------------------
Confidence 367788777765432 2556678899999999998854
Q ss_pred cccccccCCEEEEEeC----C---CcEEEEEecCCCc------eeEeeccC-CccceEEEEEEccCCCEEEEeeCCCcEE
Q 003467 163 HEQSVVEDRRVALACD----D---GCVRIYRITDSDE------LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIR 228 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~----d---g~i~iwd~~~~~~------~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 228 (817)
.|+++.. . -.+.||.+..... +.....|. .+-++|.|+.|.|++..|++-. |..|.
T Consensus 78 ---------ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 78 ---------ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred ---------eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 3333322 1 3577999873322 22223444 4667999999999999999887 77999
Q ss_pred EEECCCCce-EEEEEeecCCCCCCCceeEEEeEEec--CCeEEEEcCCCcEEEEeCCCCeEEEEe-ecCccCeeEEEEec
Q 003467 229 SWDAKLGYE-IYRITVGLGGLGSGPELCIWSLLSLR--CGTLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAP 304 (817)
Q Consensus 229 vwd~~~g~~-~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~s~ 304 (817)
+|++..+.. +..+... ....+.....+-+|+| |+.-+....|++++.||+++......+ .+|...|..+.|+|
T Consensus 148 l~~l~ess~~vaev~ss---~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSS---ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred EEEcccCcchheeeccc---ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 999998876 3333321 1123566778888988 567777778999999999987776665 46888899999999
Q ss_pred CCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCC
Q 003467 305 SHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 383 (817)
Q Consensus 305 ~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 383 (817)
+.+ +|+++|.||.|++||.+..+. .+..+.+|++.|.++.|. |...
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~----------------pv~el~~HsHWvW~VRfn---------~~hd-------- 271 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKF----------------PVQELPGHSHWVWAVRFN---------PEHD-------- 271 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCc----------------cccccCCCceEEEEEEec---------Cccc--------
Confidence 875 567899999999999988764 688999999999999997 3322
Q ss_pred CCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 384 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+++++||.|..|.+|.....
T Consensus 272 ---------------qLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 272 ---------------QLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ---------------eEEEecCCCceeEEEecccc
Confidence 59999999999999987653
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.8e-18 Score=167.86 Aligned_cols=257 Identities=17% Similarity=0.246 Sum_probs=197.3
Q ss_pred CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC--------CeEEEEEeecCceEEEEeeecC
Q 003467 48 GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD--------LKQKIVLQSIDFSIWQMAVAPS 119 (817)
Q Consensus 48 ~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------~~~~~~~~~~~~~i~~~~~s~~ 119 (817)
.|....++..| ...|++++|.|-... |++++.||+|.+|+++. -+++.++.+|.++|.|+++.+.
T Consensus 283 ~w~ik~tl~s~-~d~ir~l~~~~sep~------lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 283 KWNIKFTLRSH-DDCIRALAFHPSEPV------LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred ecceeeeeecc-hhhhhhhhcCCCCCe------EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC
Confidence 36566677766 789999999998876 99999999999999932 3577899999999999999999
Q ss_pred CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCC-------Cc
Q 003467 120 NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDS-------DE 192 (817)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~ 192 (817)
+ ..+.+|+.||+|+.|++... ..
T Consensus 356 ~--------------------------------------------------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp 385 (577)
T KOG0642|consen 356 G--------------------------------------------------EHCYSGGIDGTIRCWNLPPNQDPDDSYDP 385 (577)
T ss_pred c--------------------------------------------------eEEEeeccCceeeeeccCCCCCcccccCc
Confidence 8 59999999999999966511 12
Q ss_pred eeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEE
Q 003467 193 LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSA 270 (817)
Q Consensus 193 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~ 270 (817)
......+.||++.|+.+++|+...+|++++.||+++.|+...... ..+... .....-.++.+-... ..++.
T Consensus 386 ~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~------~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 386 SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP------KEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc------cccCCcceEeeccchhHhhhhh
Confidence 233467889999999999999999999999999999999865554 223211 122333444444333 23333
Q ss_pred cCCCcEEEEeCCCCeEEEEeecC-------ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 271 DSTGSVQFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
..-+.-.+.+.+.+..+..+... ...+..+.+.|.+...+++..|+.|+++|..++.
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---------------- 522 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---------------- 522 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc----------------
Confidence 33344445555555555544321 2457788899999999999999999999999988
Q ss_pred EEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 344 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
.+.....|...+.++++. |+|- +|++++.|+.+++|.+...
T Consensus 523 -~l~s~~a~~~svtslai~---------~ng~------------------------~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 523 -ILHSMVAHKDSVTSLAID---------PNGP------------------------YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -cchheeeccceecceeec---------CCCc------------------------eEEeecCCceeehhhccch
Confidence 788889999999999997 6664 9999999999999998653
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.3e-18 Score=178.19 Aligned_cols=240 Identities=21% Similarity=0.296 Sum_probs=193.7
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
-+.+|-++|.|.+|-..|.++.+|+.|..|+||...++. |...+.|| .+.|+.++.+.+... +++++.|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGh-s~ditdlavs~~n~~------iaaaS~D 253 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGH-SGDITDLAVSSNNTM------IAAASND 253 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCC-ccccchhccchhhhh------hhhcccC
Confidence 357899999999999999999999999999999998887 78899999 899999999998877 9999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
..|++|.+.++.++..+.+|.+.|++++|+|..
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----------------------------------------------- 286 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----------------------------------------------- 286 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeeccCccc-----------------------------------------------
Confidence 999999999999999999999999999999843
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEe-eccCC-ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYH-RSLPR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
+.+.||++++||.. -....+. +.+.. ...-+.++.|-..+..++||+.|+.-..|....-.
T Consensus 287 -------sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~--------- 349 (1113)
T KOG0644|consen 287 -------SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA--------- 349 (1113)
T ss_pred -------cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------
Confidence 56789999999986 1121111 11111 23467778888899999999999988888754211
Q ss_pred CCCCCCCceeEEEeEEecC--CeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEE-EEEccCCcEEEEE
Q 003467 246 GGLGSGPELCIWSLLSLRC--GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYK 322 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~~~~~dg~i~iw~ 322 (817)
.+...+.-+.++.+ ...+++-.+..+++|++.+|.+.+.+.+|...+..|.++|-+..+ .+++.||...|||
T Consensus 350 -----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 350 -----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred -----hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 12222222222222 256677778889999999999999999999999999999976555 4789999999999
Q ss_pred eeccc
Q 003467 323 ASCES 327 (817)
Q Consensus 323 ~~~~~ 327 (817)
+-.+.
T Consensus 425 i~eg~ 429 (1113)
T KOG0644|consen 425 IWEGI 429 (1113)
T ss_pred cccCC
Confidence 98776
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.6e-15 Score=141.88 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=186.3
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC--C
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID--G 88 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--~ 88 (817)
..+..|..+.|..|...|.+|+.|| -++++...-.. +.....+ ...|--+-|+.. + +|..+.+ .
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~~~~~~--~~~IvEmLFSSS--L------vaiV~~~qpr 68 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CFSKDTE--GVSIVEMLFSSS--L------VAIVSIKQPR 68 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHH---hhcccCC--CeEEEEeecccc--e------eEEEecCCCc
Confidence 3456788889999999999999998 78888876442 2222222 234555556543 2 5544443 4
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.+++.+...+..+..+. ...+|-++.++.+
T Consensus 69 ~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~------------------------------------------------- 98 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIF-FPTSILAVRMNRK------------------------------------------------- 98 (391)
T ss_pred eEEEEEcccCceEEEEe-cCCceEEEEEccc-------------------------------------------------
Confidence 58888888877776665 4567888887753
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
+|++.-++. |+|||+.+-+.+..+.....+...+.++++++.+.+|+.-+. .|.|.+||+.+-+.+..+.
T Consensus 99 ---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---- 170 (391)
T KOG2110|consen 99 ---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---- 170 (391)
T ss_pred ---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE----
Confidence 566666654 999999866666434444467777888888888889987543 5899999999999999998
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCc-EEEEeCCCCeEEEEeecCc--cCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSFHK--GDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
.|++.+-+++|+++| .|++++..|+ |+|+.+.+|+.+..|+-.. ..|.+++|+|++++|.+.+..++|++|.
T Consensus 171 ----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 171 ----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 699999999999999 7899999998 6999999999999987433 4688999999999999999999999999
Q ss_pred eeccc
Q 003467 323 ASCES 327 (817)
Q Consensus 323 ~~~~~ 327 (817)
+....
T Consensus 247 L~~~~ 251 (391)
T KOG2110|consen 247 LEKVS 251 (391)
T ss_pred ecccc
Confidence 98765
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=3.9e-15 Score=153.29 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECC-CCceEEEEEeecCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK-LGYEIYRITVGLGGLG 249 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~-~g~~~~~~~~~~~~~~ 249 (817)
.+++...++.|++|++.+...+.....+. +.+....++++|++++|++++ .++.|.+|++. +|.....-..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------ 76 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------ 76 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------
Confidence 45555779999999997545554445553 345677899999999987765 47899999986 3432211111
Q ss_pred CCCceeEEEeEEecCC-eEEE-EcCCCcEEEEeCCC-Ce---EEEEeecCccCeeEEEEecCCCEEEEEc-cCCcEEEEE
Q 003467 250 SGPELCIWSLLSLRCG-TLVS-ADSTGSVQFWDSRH-GT---LLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYK 322 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s-~~~dg~i~iwd~~~-~~---~~~~~~~h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~ 322 (817)
........++++|++ .+++ ...++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+|+
T Consensus 77 -~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 77 -PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred -cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 122235679999999 3444 44588999999974 32 233332 234466788999998887654 468899998
Q ss_pred eec
Q 003467 323 ASC 325 (817)
Q Consensus 323 ~~~ 325 (817)
+.+
T Consensus 155 ~~~ 157 (330)
T PRK11028 155 LSD 157 (330)
T ss_pred ECC
Confidence 865
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.9e-15 Score=147.42 Aligned_cols=556 Identities=13% Similarity=0.135 Sum_probs=334.0
Q ss_pred CCceeeeeecc-CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC-----------CcEEEEEEcCCCCCcEEEEEE
Q 003467 1 MPIYRNSSIDW-KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS-----------GWHCQLTVHGDPKSRISSLVW 68 (817)
Q Consensus 1 ~~~hr~r~~~~-h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~g~~~~~V~~l~~ 68 (817)
|.+.+..-+.- ......|++|+....++|+|+.||.++|-.+.+... ....-+++.|| .++|.-+.|
T Consensus 1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTW 79 (1189)
T KOG2041|consen 1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTW 79 (1189)
T ss_pred CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEe
Confidence 45555554432 235679999999999999999999999988764332 12234577788 899999999
Q ss_pred eecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEE--eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCC
Q 003467 69 CHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVL--QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSD 146 (817)
Q Consensus 69 s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (817)
..+.+. |-++..+|.|.||-+-.|.-...+ .....-|.+|.|+.+|.
T Consensus 80 Ne~~QK------LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~------------------------- 128 (1189)
T KOG2041|consen 80 NENNQK------LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT------------------------- 128 (1189)
T ss_pred cccccc------ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-------------------------
Confidence 999887 999999999999998776543222 23456789999999995
Q ss_pred CccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCc
Q 003467 147 DHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 226 (817)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~ 226 (817)
.++...+||.|.+=.+..+.-. -+.+.+. ....+.|++|.+.++.+-.+|.
T Consensus 129 -------------------------kIcIvYeDGavIVGsvdGNRIw--gKeLkg~--~l~hv~ws~D~~~~Lf~~ange 179 (1189)
T KOG2041|consen 129 -------------------------KICIVYEDGAVIVGSVDGNRIW--GKELKGQ--LLAHVLWSEDLEQALFKKANGE 179 (1189)
T ss_pred -------------------------EEEEEEccCCEEEEeeccceec--chhcchh--eccceeecccHHHHHhhhcCCc
Confidence 4555555555554444311111 0222221 2347889999999999999999
Q ss_pred EEEEECCCCceEEEEEee----cCCCCCCCceeEEEeEEe--------cCC-eEEEEcCCCcEEEEeCCCCeEEEEeecC
Q 003467 227 IRSWDAKLGYEIYRITVG----LGGLGSGPELCIWSLLSL--------RCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH 293 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~----~~~~~~~~~~~v~~v~~~--------~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h 293 (817)
+.++|.+. ....++... ..+........|-.+.|. ||. .|+.+-..|.+++-.-.+...-..+..
T Consensus 180 ~hlydnqg-nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt- 257 (1189)
T KOG2041|consen 180 THLYDNQG-NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT- 257 (1189)
T ss_pred EEEecccc-cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-
Confidence 99999753 222221110 001111122234445443 355 788888899988876554333222322
Q ss_pred ccCeeEEEEecCCCEEEEEccCC---------cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 294 KGDVNALAAAPSHNRVFSTGSDG---------QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 294 ~~~v~~l~~s~~~~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
.-.+....|+++|..|+++|.+. .|.+|..-.. .+.+++.....|++++|-
T Consensus 258 gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~------------------i~gtlkvpg~~It~lsWE-- 317 (1189)
T KOG2041|consen 258 GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH------------------IVGTLKVPGSCITGLSWE-- 317 (1189)
T ss_pred ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh------------------heEEEecCCceeeeeEEc--
Confidence 25678889999999999988652 3444433222 456777778888888884
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
.. .+-+.-..|+.|.+-+++..-+... +.
T Consensus 318 -------g~-------------------------gLriA~AvdsfiyfanIRP~ykWgy-------------------~e 346 (1189)
T KOG2041|consen 318 -------GT-------------------------GLRIAIAVDSFIYFANIRPEYKWGY-------------------IE 346 (1189)
T ss_pred -------CC-------------------------ceEEEEEecceEEEEeecccceEEE-------------------ee
Confidence 11 2555556678888776654221110 00
Q ss_pred CCeEEEEEeCC----eEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEe
Q 003467 445 HTSLLLVQYSC----RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFEL 519 (817)
Q Consensus 445 ~~~~~l~~~~~----~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~ 519 (817)
..-.++.+... .+..|+..+.+.. + +.-....+++++.+.-.|+. ..++.+.-++.
T Consensus 347 ~TvVy~y~~~e~p~y~i~Fwdtk~nek~--------------v-----K~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~ 407 (1189)
T KOG2041|consen 347 ETVVYVYQKEELPQYGIMFWDTKTNEKT--------------V-----KTVTHFENMAFYREHCVLINRQDDGVIPEYST 407 (1189)
T ss_pred eEEEEEEccCCCcceEEEEEecccChhh--------------h-----hhhcceeehheecccEEEEeccccCCCcchhh
Confidence 00111111111 4566766544321 1 11134456666666666666 45555544421
Q ss_pred ecCCCCCceEEEee-----ecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeecc-----------Ccc
Q 003467 520 KKGKVGQGEWIINK-----RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP-----------CRE 583 (817)
Q Consensus 520 ~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----------~~~ 583 (817)
-. .....+.+.- ..+......|.-.-..-++.+++.++.+. +.+|.....+...++.+ ...
T Consensus 408 le--~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddt 484 (1189)
T KOG2041|consen 408 LE--NRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRFHGDDT 484 (1189)
T ss_pred hh--cccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccccCCCC
Confidence 11 0111111110 01111111222222233677788887665 88998754332222211 000
Q ss_pred cc----------cccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEE
Q 003467 584 EH----------DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI 653 (817)
Q Consensus 584 ~~----------~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~ 653 (817)
.. ...+.+...+|.+++.| .++|.++-..|.|.-|.+.+.......+. ...|.+++.+- +...||
T Consensus 485 p~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~--n~~~y~~~lNC-nstRlA 559 (1189)
T KOG2041|consen 485 PEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV--NPSIYSIKLNC-NSTRLA 559 (1189)
T ss_pred ccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc--CchheeEeecc-Ccchhh
Confidence 00 01234567788888874 45999999999999999998876544432 24788999998 888999
Q ss_pred EEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCCCCC
Q 003467 654 ITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVD 725 (817)
Q Consensus 654 ~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~~~~ 725 (817)
+...-|.+-+.|++-..-+ ..+...+..-...|+...|..| ++..+-+.....|++++=+.|..
T Consensus 560 iId~~gv~tf~dLd~d~~g-------~ql~~~~~~errDVWd~~Wa~d-Np~llAlmeKtrmyifrgndpeE 623 (1189)
T KOG2041|consen 560 IIDLVGVVTFQDLDYDFDG-------DQLKLIYTSERRDVWDYEWAQD-NPNLLALMEKTRMYIFRGNDPEE 623 (1189)
T ss_pred hhhhhceeeeeecccccCc-------ceeeeeehhhhhhhhhhhhccC-CchHHhhhhhceEEEecCcCccc
Confidence 9988898888888632110 0012234444567999999998 67777777777888877666544
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=7.2e-16 Score=139.04 Aligned_cols=264 Identities=17% Similarity=0.193 Sum_probs=187.8
Q ss_pred eeeeeccC-CCceEEEEECC--C-CCeEEEEe----cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCC
Q 003467 5 RNSSIDWK-PSPVVALATSA--D-DSQVAAAR----EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGL 76 (817)
Q Consensus 5 r~r~~~~h-~~~I~~la~sp--d-g~~la~~~----~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~ 76 (817)
|+..+.|. |-.+.+++||. + +.+||+|+ .++.|.|-.+.... +.....-.-.|.-+++.+.|.|+.+ +.
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~-g~ 111 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSK-GV 111 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC--CceeccCCCCCCCCccceEecCCcc-cc
Confidence 33344443 46788999983 3 55899996 35678887665322 1122222123478999999999974 12
Q ss_pred CCceEEEeeCCCeEEEEECCCC--eEE--EE-----EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 77 PGGRLFSSSIDGSVSEWDLYDL--KQK--IV-----LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 77 ~~~~l~s~~~d~~i~vwd~~~~--~~~--~~-----~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
-+..||+++ | .+++|.+... +.. .. -..+.+++++..|+.-..
T Consensus 112 ~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp-------------------------- 163 (364)
T KOG0290|consen 112 YPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP-------------------------- 163 (364)
T ss_pred Ccchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc--------------------------
Confidence 224455554 3 6999998742 211 11 123567888888887553
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC-CEEEEeeCCCc
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGY 226 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~ 226 (817)
+++.+.+-|-+..|||++++........|-.|...|..++|...+ +.+|+.+.||.
T Consensus 164 -----------------------~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 164 -----------------------NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred -----------------------ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence 489999999999999999764433346778999999999999865 47889999999
Q ss_pred EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCC-CcEEEEeCCC-CeEEEEeecCccCeeEEEE
Q 003467 227 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADST-GSVQFWDSRH-GTLLQAHSFHKGDVNALAA 302 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~ 302 (817)
+|++|++..+....+-.+. ....+...++|.+.. ++++-..| ..|.|.|++. +..+.++.+|.+.|..++|
T Consensus 221 vRmFDLR~leHSTIIYE~p-----~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 221 VRMFDLRSLEHSTIIYEDP-----SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW 295 (364)
T ss_pred EEEEEecccccceEEecCC-----CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe
Confidence 9999998765544443210 125677888888776 45554443 4599999985 6778999999999999999
Q ss_pred ecCC-CEEEEEccCCcEEEEEeeccc
Q 003467 303 APSH-NRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 303 s~~~-~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|.. ..|.++|.|..+.+||+....
T Consensus 296 aPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cCCCCceeeecCCcceEEEEeccccc
Confidence 9964 688999999999999998764
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=146.35 Aligned_cols=286 Identities=16% Similarity=0.121 Sum_probs=198.6
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.++|++-..|+|++||..+|+.+..+.++...+..++|..+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~------------------------------------ 84 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP------------------------------------ 84 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC------------------------------------
Confidence 45888888999999999999999999999999999999875311
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEEEEeeC----CCcEEEEECC
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSS----DGYIRSWDAK 233 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~----dg~i~vwd~~ 233 (817)
..+.+++.||+|++||++...+... .....|. .+..|++.+-.++.+++|.. |-.|.+||++
T Consensus 85 ------------h~v~s~ssDG~Vr~wD~Rs~~e~a~-~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR 151 (376)
T KOG1188|consen 85 ------------HGVISCSSDGTVRLWDIRSQAESAR-ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVR 151 (376)
T ss_pred ------------CeeEEeccCCeEEEEEeecchhhhh-eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEec
Confidence 3789999999999999986555432 3344454 46778888777888888764 5679999999
Q ss_pred CCce-EEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCe----EEEEeecCccCeeEEEEecCC
Q 003467 234 LGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT----LLQAHSFHKGDVNALAAAPSH 306 (817)
Q Consensus 234 ~g~~-~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~ 306 (817)
..+. +..+.. .|...|+++.|.|.. .|++|+.||.|.++|++... ++.++ .|...|.++.|..++
T Consensus 152 ~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 152 SEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKK 223 (376)
T ss_pred cccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCC
Confidence 8777 555543 699999999999988 79999999999999997532 23333 467789999999887
Q ss_pred -CEEEEEccCCcEEEEEeecccCCCCC---CCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCC
Q 003467 307 -NRVFSTGSDGQVILYKASCESIGPND---GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 307 -~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
+.|++-+...+..+|+++.+...... .+........|.+-..+..|
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~------------------------------ 273 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH------------------------------ 273 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc------------------------------
Confidence 46888889999999999887621100 00000001111111111111
Q ss_pred CCCccccccccccCCCcEEEEecC-CCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEE
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDI 459 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i 459 (817)
.+.+....+.++. -+...++.+..............++..+...+.++.|...+.++.++.. .+.+
T Consensus 274 -----------~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 274 -----------SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred -----------cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 1112234444444 6666666665322222223334556667788888888887777777655 7888
Q ss_pred EEe
Q 003467 460 LSV 462 (817)
Q Consensus 460 ~~~ 462 (817)
|..
T Consensus 343 Wk~ 345 (376)
T KOG1188|consen 343 WKV 345 (376)
T ss_pred Eec
Confidence 885
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-17 Score=159.00 Aligned_cols=315 Identities=19% Similarity=0.213 Sum_probs=227.6
Q ss_pred eeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC---eEEEEcC
Q 003467 196 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADS 272 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~s~~~ 272 (817)
...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..++....+.. +|...|....|.|.. .+++++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCCCcCceeccc
Confidence 367889999999999999999999999999999999999998888774 788888888888755 7999999
Q ss_pred CCcEEEEeCCC-CeE--EEEeecCccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeec
Q 003467 273 TGSVQFWDSRH-GTL--LQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS 348 (817)
Q Consensus 273 dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (817)
||.+++=.+.. +.+ ...+..|.+.|..++.-|+.. .++++|.|+.+.-+|+....... + ...
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-----------~---~~c 273 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-----------K---FVC 273 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-----------e---eee
Confidence 99999876653 222 355677999999999999764 57789999999999988765211 1 112
Q ss_pred cccCCC---ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcc
Q 003467 349 VRAHTH---DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 425 (817)
Q Consensus 349 ~~~h~~---~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~ 425 (817)
...+.. ...+++.. |.. ...+++|+.|..+++||...........
T Consensus 274 r~~~~~~~v~L~~Ia~~---------P~n-----------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 274 READEKERVGLYTIAVD---------PRN-----------------------TNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred eccCCccceeeeeEecC---------CCC-----------------------ccccccCChhhhhhhhcccchhhccccc
Confidence 233332 23344443 222 2489999999999999987643221100
Q ss_pred cCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc-
Q 003467 426 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM- 504 (817)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 504 (817)
.+.. |.| .. +.....-.|+|++++.++.
T Consensus 322 -----------~~~~--f~p-----------------------------------~h---l~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 322 -----------VLDK--FCP-----------------------------------HH---LVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred -----------hhhh--cCC-----------------------------------cc---ccccCcccceeEEecCCccc
Confidence 0000 000 00 1112236699999997664
Q ss_pred EEEEEcCCceEEEEeecCCCCCceE------EEeeecCCcccc--ceeEEEE-ecCCCEEEEEecCCcEEEEEccCCcee
Q 003467 505 LFAYSDHVKPSLFELKKGKVGQGEW------IINKRQLPRKLQ--FAHSMIF-SYDSSQLIIAGHDRRIYVVDVSSSELL 575 (817)
Q Consensus 505 ~la~~~~~~i~l~~~~~~~~~~~~~------~~~~~~~~~~~~--~i~~~~f-spd~~~l~~~~~dg~i~v~d~~~~~~~ 575 (817)
+|+.-.+..|++|+-... .+.... ...+....+|.. .|..+.| -|...++++|+.-|.|.||+-.+++.+
T Consensus 351 lLaSYnDe~IYLF~~~~~-~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMG-DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eeeeecccceEEeccccc-cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 566668889999955442 221110 111223455543 5667754 788999999999999999999999999
Q ss_pred eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcc
Q 003467 576 HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 626 (817)
+-+++ ...-|+||.-+|--..||+.+-|..|+||-..+.+
T Consensus 430 ~~Meg-----------Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 430 RFMEG-----------DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred HHhhc-----------ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 99988 45589999999999999999999999999764443
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2.7e-16 Score=163.92 Aligned_cols=254 Identities=16% Similarity=0.231 Sum_probs=186.8
Q ss_pred CCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 12 KPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 12 h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
-++.|+|++|+| +..+||.|..+|.|.+||+..+... ........+.|...++++.|..+-.- ..+++++.||.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~----~~f~s~ssDG~ 316 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN----TEFFSLSSDGS 316 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC----CceEEEecCCc
Confidence 357899999999 5677888889999999999977641 11222333444899999999875432 45999999999
Q ss_pred EEEEECCCCeEE------EEEe------ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 90 VSEWDLYDLKQK------IVLQ------SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 90 i~vwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
|+-|+++.-... .... .....+.+++|.+...
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p------------------------------------ 360 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP------------------------------------ 360 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCC------------------------------------
Confidence 999987643321 1111 1235677888888764
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEec---CCCce--eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRIT---DSDEL--IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
..+++|+++|.|.-=+-. ..... .....+..|.+.|.++.++|=+..++..+.|-+++||.-
T Consensus 361 -------------~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~ 427 (555)
T KOG1587|consen 361 -------------NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE 427 (555)
T ss_pred -------------ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccc
Confidence 389999999988773322 11100 112345568899999999998876665555999999997
Q ss_pred C-CCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC--CeEEEEeecCccCeeEEEEecCCC
Q 003467 233 K-LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 233 ~-~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
. ....+..+. .+...|.+++|||-. .|++++.+|.|.+||+.. ..++.+.+.+......+.|+++|+
T Consensus 428 ~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 428 DVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK 499 (555)
T ss_pred cCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc
Confidence 6 444554444 466679999999988 799999999999999974 344555555666677888999999
Q ss_pred EEEEEccCCcEEEEEeecc
Q 003467 308 RVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~ 326 (817)
.|++|...|.+.+|++...
T Consensus 500 ~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 500 LLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEecCCCcEEEEEcCch
Confidence 9999999999999999654
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=3.7e-15 Score=153.40 Aligned_cols=249 Identities=12% Similarity=0.154 Sum_probs=163.7
Q ss_pred CCceEEEEECCCCCeEEEE-ecCCcEEEEecCC-CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CCe
Q 003467 13 PSPVVALATSADDSQVAAA-REDGSLEIWLVSP-GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DGS 89 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~-~~dg~i~iwd~~~-~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~ 89 (817)
.+....++++||+++|+++ ..++.|.+|++.. ++ +........ .+....++|+|++++ |++++. ++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--l~~~~~~~~--~~~p~~i~~~~~g~~------l~v~~~~~~~ 103 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--LTFAAESPL--PGSPTHISTDHQGRF------LFSASYNANC 103 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--eEEeeeecC--CCCceEEEECCCCCE------EEEEEcCCCe
Confidence 4567789999999998776 4578899999973 33 112222221 235679999999987 777764 789
Q ss_pred EEEEECCC-Ce---EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 90 VSEWDLYD-LK---QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 90 i~vwd~~~-~~---~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
|.+|++++ +. .+..+. +......++++|++..
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~------------------------------------------- 139 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT------------------------------------------- 139 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-------------------------------------------
Confidence 99999974 32 223222 2234567889998842
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEe----eccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCC--Cce-
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYH----RSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL--GYE- 237 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~--g~~- 237 (817)
.+++...++.|.+||+.+.+.+... .... .......++|+|||++|+++.. +++|.+|++.. ++.
T Consensus 140 ------l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 140 ------LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred ------EEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 3455667799999999754433210 0111 1234568999999999988876 89999999973 332
Q ss_pred -EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-CCCcEEEEeCCCCe----EEEEeecCccCeeEEEEecCCCEEE
Q 003467 238 -IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRHGT----LLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 238 -~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
+..+.. .+...........+.++|++ +++++. .++.|.+|++.... .+..... ......++++|||++|+
T Consensus 213 ~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 213 CVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLI 289 (330)
T ss_pred EEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEE
Confidence 222221 00000122234468899999 455554 47889999986432 2233222 13456789999999999
Q ss_pred EEcc-CCcEEEEEeec
Q 003467 311 STGS-DGQVILYKASC 325 (817)
Q Consensus 311 ~~~~-dg~i~iw~~~~ 325 (817)
++.. +++|.+|+++.
T Consensus 290 va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 290 AAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEccCCcEEEEEEcC
Confidence 8775 89999998864
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.3e-17 Score=171.00 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=208.1
Q ss_pred CCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 251 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
+|...|+|+.|...| ++++|+.|..++||..+++.++..+.+|.++|+.++.+.+..++++++.|..|++|.+..+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-- 265 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-- 265 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--
Confidence 799999999999999 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
.+..+++|++.|++++|+ -..+.+.||+
T Consensus 266 ---------------pvsvLrghtgavtaiafs-------------------------------------P~~sss~dgt 293 (1113)
T KOG0644|consen 266 ---------------PVSVLRGHTGAVTAIAFS-------------------------------------PRASSSDDGT 293 (1113)
T ss_pred ---------------hHHHHhccccceeeeccC-------------------------------------ccccCCCCCc
Confidence 788999999999999997 2337788999
Q ss_pred EEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeec
Q 003467 410 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 489 (817)
Q Consensus 410 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 489 (817)
+++||.+- .++...+.|.... +
T Consensus 294 ~~~wd~r~----~~~~y~prp~~~~------------~------------------------------------------ 315 (1113)
T KOG0644|consen 294 CRIWDARL----EPRIYVPRPLKFT------------E------------------------------------------ 315 (1113)
T ss_pred eEeccccc----cccccCCCCCCcc------------c------------------------------------------
Confidence 99999871 1111111111100 0
Q ss_pred CCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCC-CEEEEEecCCcEEEE
Q 003467 490 ASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVV 567 (817)
Q Consensus 490 ~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~-~~l~~~~~dg~i~v~ 567 (817)
...+.++.+-.++.-++++ .++.-..|.+.. ..| +.....-+.++.|. .+.+++-.+-.+.+|
T Consensus 316 -~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 316 -KDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred -ccceeeeeccccccccccccCCcccccchhhH-----hhh---------hccceEEEeccccccccceeeeeeeEeeee
Confidence 0222333344444444553 455555555432 111 00011111222222 456667778889999
Q ss_pred EccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecC
Q 003467 568 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 568 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
++.+|.+++.+.+ |...+..|.++|-.. ...+++.||...|||+-.+.........|. .+....||+
T Consensus 381 nl~~g~l~H~l~g-----------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSq 448 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMG-----------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQ 448 (1113)
T ss_pred ecccchhhhhhcc-----------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCC
Confidence 9999999999998 899999999999655 455789999999999987766554444454 666779999
Q ss_pred CCCCeEEEEecCCeEEEEEcCCC
Q 003467 647 QNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 647 ~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
||..++....-|+++++....+
T Consensus 449 -dgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 449 -DGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred -CCceEecCCCCCceEEeccCCC
Confidence 9999988888889999876544
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.5e-16 Score=136.06 Aligned_cols=233 Identities=17% Similarity=0.219 Sum_probs=173.6
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC---------C-eEEEEEeecCceEEEEeeecCCCccceeeccCc
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD---------L-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSD 131 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------~-~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~ 131 (817)
.|-+-+|+|.+++ |+.++.+|+|.+..+.+ | ..+...++|.++|+.++|.-+
T Consensus 12 tvf~qa~sp~~~~------l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------------ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQY------LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------------ 73 (325)
T ss_pred HHHHHhhCCcceE------EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------------
Confidence 4556679999998 99999999999999853 1 234556899999999999832
Q ss_pred cccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc-eeEe----eccCCcc---
Q 003467 132 HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE-LIYH----RSLPRVS--- 203 (817)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~----~~~~~h~--- 203 (817)
+|++|++ |.|+-|......+ .... .....|.
T Consensus 74 ----------------------------------------~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~ 112 (325)
T KOG0649|consen 74 ----------------------------------------FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAV 112 (325)
T ss_pred ----------------------------------------heeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcc
Confidence 5666665 9999998863322 1100 1112233
Q ss_pred --ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEE-ecCCeEEEEcCCCcEEEEe
Q 003467 204 --GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS-LRCGTLVSADSTGSVQFWD 280 (817)
Q Consensus 204 --~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~l~s~~~dg~i~iwd 280 (817)
-.|+++...|...-+++++.|+.+.-||+++|+..+.+. +|...|.++.- +.++++++|++||++++||
T Consensus 113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd 184 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWD 184 (325)
T ss_pred cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEe
Confidence 268999999988888888899999999999999999998 89999999988 5677999999999999999
Q ss_pred CCCCeEEEEeec---------C-ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccc
Q 003467 281 SRHGTLLQAHSF---------H-KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 281 ~~~~~~~~~~~~---------h-~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
.++++.++.+.. | ...|-+++.+ ..++++|+. ..+.+|.+...+. +++..++
T Consensus 185 ~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~---------------t~vfpip 246 (325)
T KOG0649|consen 185 TKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES---------------TCVFPIP 246 (325)
T ss_pred ccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc---------------eEEEecc
Confidence 999999887643 1 1235566654 557777654 4799999988762 1444555
Q ss_pred cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 351 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 351 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.|.+. +.|. + ..++++|....+.-|.+..
T Consensus 247 a~v~~---v~F~----------~-------------------------d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 ARVHL---VDFV----------D-------------------------DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cceeE---eeee----------c-------------------------ceEEEeccccceeeeeecc
Confidence 55443 3342 1 2788888888888887764
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.8e-16 Score=153.76 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=165.9
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+.+|.+-|+||+|+.||.+||+|+.|-.+.|||+...+ ..+.+..+|...|-++.|-|...- ..++||+.|.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnn----riv~sgAgDk 117 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNN----RIVLSGAGDK 117 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCC----eEEEeccCcc
Confidence 58999999999999999999999999999999999766 577777667999999999997553 5588999999
Q ss_pred eEEEEECCC----------CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 89 SVSEWDLYD----------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 89 ~i~vwd~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.|+++|+.. .+....+.+|..+|..++..|+++.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph------------------------------------ 161 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH------------------------------------ 161 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc------------------------------------
Confidence 999999985 2344666789999999999999853
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeE-------eeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY-------HRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSW 230 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vw 230 (817)
.+.++++||+|+-+|+........ ...+...--...|++.+|.. .+|++|+.|-..++|
T Consensus 162 -------------tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY 228 (758)
T KOG1310|consen 162 -------------TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY 228 (758)
T ss_pred -------------eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence 899999999999999975322210 01111222356789999865 478899999999999
Q ss_pred ECCCCceEEEEEeecCCCCCCCceeEEEeE-EecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEE
Q 003467 231 DAKLGYEIYRITVGLGGLGSGPELCIWSLL-SLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV 309 (817)
Q Consensus 231 d~~~g~~~~~~~~~~~~~~~~~~~~v~~v~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 309 (817)
|.+.- +..+... +...........++. |+|++. ...+ |..... ..-++-++|+|+|.-|
T Consensus 229 D~Rr~--lks~~s~-~~~~~~pp~~~~cv~yf~p~hl---kn~~----------gn~~~~----~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 229 DRRRV--LKSFRSD-GTMNTCPPKDCRCVRYFSPGHL---KNSQ----------GNLDRY----ITCCTYVTFNPNGTEL 288 (758)
T ss_pred hhhhh--ccCCCCC-ccccCCCCcccchhheecCccc---cCcc----------cccccc----eeeeEEEEECCCCcEE
Confidence 96321 1111100 000000111111222 222211 0111 100000 1124567899999887
Q ss_pred EEEccCCcEEEEEeecccC
Q 003467 310 FSTGSDGQVILYKASCESI 328 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~~~~ 328 (817)
++.-..-.|+++++..++.
T Consensus 289 Lvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEeeCCeEEEEEeecCCCC
Confidence 7765556899999987763
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.3e-16 Score=142.14 Aligned_cols=245 Identities=17% Similarity=0.241 Sum_probs=181.4
Q ss_pred ccCCCceEEEEECCCC-----CeEEEEecCCcEEEEecCCCCCCcEEEEEE----cCCCCCcEEEEEEeecCCCCCCCce
Q 003467 10 DWKPSPVVALATSADD-----SQVAAAREDGSLEIWLVSPGTSGWHCQLTV----HGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 10 ~~h~~~I~~la~spdg-----~~la~~~~dg~i~iwd~~~~~~~~~~~~~~----~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
--|+-+++.+.|.||. .+||+.+. .+++|.+...+....++..+ ..++.+++++..|..-.. .+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp-----~~ 165 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP-----NL 165 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc-----ce
Confidence 3689999999999987 47887653 69999998533222223222 233467899999985443 56
Q ss_pred EEEeeCCCeEEEEECCCCe---EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 81 LFSSSIDGSVSEWDLYDLK---QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
|.+++-|.+..|||+++|. ....+-.|..+|..++|...+.
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~------------------------------------ 209 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR------------------------------------ 209 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc------------------------------------
Confidence 8999999999999999873 4677889999999999998663
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC-CEEEEeeCC-CcEEEEECCC-
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSD-GYIRSWDAKL- 234 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~d-g~i~vwd~~~- 234 (817)
+.+|+.+.||.||+||++..+.-.....-.....+...++|++.. +++|+-..| ..|.+-|++.
T Consensus 210 -------------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 210 -------------DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred -------------ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 389999999999999998555443333333335688999998754 567776665 4689999875
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCe------EEEEeecCccCeeEEEEec-C
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT------LLQAHSFHKGDVNALAAAP-S 305 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~s~-~ 305 (817)
...+.++. +|...|+.++|.|.. .|++++.|..+.+||+.+-- ++-.+. ..+.|..+.|++ .
T Consensus 277 ~tpva~L~--------~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 277 CTPVARLR--------NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred Ccceehhh--------cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence 34555665 799999999999987 79999999999999998522 122233 467899999996 4
Q ss_pred CCEEEEEccCCcEEE
Q 003467 306 HNRVFSTGSDGQVIL 320 (817)
Q Consensus 306 ~~~l~~~~~dg~i~i 320 (817)
...++.+. ++++.+
T Consensus 348 ~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 348 PDWIAICF-GKKLEI 361 (364)
T ss_pred CCEEEEEe-cCeeeE
Confidence 56676664 334433
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-15 Score=160.87 Aligned_cols=309 Identities=19% Similarity=0.225 Sum_probs=203.3
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC--CCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG--DPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g--~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
+|..+.+.+-..+.|+|=...+|++...-.|+|||...++ +...+.. .....|+.|.+-.+... ..|+++
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liNe~D~----aLlLta 1129 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELINEQDD----ALLLTA 1129 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCc----eeccccCCCCCCCccceeeeecccch----hheeee
Confidence 3445556667788999999999999988899999999877 3333332 23468999999876544 569999
Q ss_pred eCCCeEEEEEC-CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 85 SIDGSVSEWDL-YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 85 ~~d~~i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
+.||.|+||+- .++.....+-.--..+..+...+.+..+++.
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d------------------------------------- 1172 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD------------------------------------- 1172 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee-------------------------------------
Confidence 99999999973 2321111111111122222222333221110
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc-cCCCEEEEeeCCCcEEEEECCCCce---EE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS-ADGNMLYSGSSDGYIRSWDAKLGYE---IY 239 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s~~~dg~i~vwd~~~g~~---~~ 239 (817)
.--...+|+++++-..|+|||....... .-...+...-|+++.-+ ..|+.+++|..||.|++||.+.... +.
T Consensus 1173 --WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~--~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1173 --WQQQSGHLLVTGDVRSIRIWDAHKEQVV--ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred --hhhhCCeEEecCCeeEEEEEecccceeE--eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 0011147888888899999999743332 12223445567777643 3479999999999999999875432 23
Q ss_pred EEEeecCCCCCCCcee--EEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEE--EeecCc--c-CeeEEEEecCCCEEE
Q 003467 240 RITVGLGGLGSGPELC--IWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQ--AHSFHK--G-DVNALAAAPSHNRVF 310 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~--v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~--~~~~h~--~-~v~~l~~s~~~~~l~ 310 (817)
... .|... |..+.+-+.| .|++|+.+|.|++||++...... ++..|. + ..+++..+++...++
T Consensus 1249 ~~R--------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1249 VYR--------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred eec--------ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence 332 45555 9999999888 59999999999999999642222 222222 3 599999999999999
Q ss_pred EEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccc
Q 003467 311 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 390 (817)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (817)
+|+. +.|.||++...+..... . .-..+......+.||+|. |-.
T Consensus 1321 sGs~-q~ikIy~~~G~~l~~~k------~-----n~~F~~q~~gs~scL~FH---------P~~---------------- 1363 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQLNIIK------Y-----NPGFMGQRIGSVSCLAFH---------PHR---------------- 1363 (1387)
T ss_pred ecCc-ceEEEEecChhhhcccc------c-----CcccccCcCCCcceeeec---------chh----------------
Confidence 9988 99999999876632110 0 011112223456888886 443
Q ss_pred cccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 391 HKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 391 ~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
-+|+.|..|..|.+|....
T Consensus 1364 --------~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1364 --------LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred --------HhhhhccCCceEEEeecCC
Confidence 3899999999999997654
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.5e-15 Score=160.05 Aligned_cols=305 Identities=14% Similarity=0.159 Sum_probs=194.7
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC---eEEEEcCCCcEEEEeC
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDS 281 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~s~~~dg~i~iwd~ 281 (817)
.-..+.|+|=...++++...-.|++||.+.++.+..+..+. .....|..+.+..+. .+++++.||.|+||+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 45568889988999999877799999999999988887432 355678888887544 6889999999999964
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEe
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 361 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 361 (817)
-.... ...=.--+|++=...+.++..-|.+.=|.-.
T Consensus 1141 y~~~~-------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~------------------------------------- 1176 (1387)
T KOG1517|consen 1141 YADKW-------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ------------------------------------- 1176 (1387)
T ss_pred ccccc-------CCceeEEeeccccccCccCCCCCeeeehhhh-------------------------------------
Confidence 31110 0000001122111112222222222222111
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecce
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT 441 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (817)
. .+|+++|.-..|++||.......
T Consensus 1177 -----------------------------------~-G~Ll~tGd~r~IRIWDa~~E~~~-------------------- 1200 (1387)
T KOG1517|consen 1177 -----------------------------------S-GHLLVTGDVRSIRIWDAHKEQVV-------------------- 1200 (1387)
T ss_pred -----------------------------------C-CeEEecCCeeEEEEEecccceeE--------------------
Confidence 1 14555555778888887653211
Q ss_pred eecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEec-CCCcEEEEE-cCCceEEEEe
Q 003467 442 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGMLFAYS-DHVKPSLFEL 519 (817)
Q Consensus 442 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~la~~-~~~~i~l~~~ 519 (817)
..+..+....++++.-+ ..|..+++| .||.+++|+.
T Consensus 1201 ------------------------------------------~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1201 ------------------------------------------ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred ------------------------------------------eecccCCCccceeecccccCCceEEEeecCCceEEeec
Confidence 11111122334443322 235777876 8899999998
Q ss_pred ecCCCCCceEEEeeecCCcccc--ceeEEEEecCCCE-EEEEecCCcEEEEEccCCceeeeec--cCcccccccCCCCCC
Q 003467 520 KKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSSELLHTFT--PCREEHDREIQPSEP 594 (817)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~fspd~~~-l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~ 594 (817)
........+ .....|.. +|..+.+-+.|-. |++|+.+|.|++||+........+. .+.+ ..+
T Consensus 1239 R~a~~ds~v-----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~--------yGs 1305 (1387)
T KOG1517|consen 1239 RMAPPDSLV-----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE--------YGS 1305 (1387)
T ss_pred ccCCccccc-----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc--------cCc
Confidence 864332221 11223333 3888999886655 9999999999999997542222222 1111 234
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEE--ec---CCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 595 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 595 ~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~--~~---~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
..+++..+++...+|+|+. +.|+||++...+.-... +. .....+.+++|+| -.-+||+|..|+.|.||..+..
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 6999999999999999998 89999999866543211 11 1126789999999 8888999999999999999877
Q ss_pred cc
Q 003467 670 QL 671 (817)
Q Consensus 670 ~~ 671 (817)
++
T Consensus 1384 ~~ 1385 (1387)
T KOG1517|consen 1384 RL 1385 (1387)
T ss_pred CC
Confidence 64
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=154.34 Aligned_cols=302 Identities=14% Similarity=0.183 Sum_probs=228.0
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
-+..|++.|+.+.|...|..|++|+.|-.|.+||+..+.. .+.+.++|...|-.-.|-|...- .-|++++.|
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d----~ti~~~s~d 208 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGD----RTIVTSSRD 208 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCC----cCceecccc
Confidence 3589999999999999999999999999999999999883 66777666788888889886443 349999999
Q ss_pred CeEEEEECC-CCeEE--EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 88 GSVSEWDLY-DLKQK--IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 88 ~~i~vwd~~-~~~~~--~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
|.|++=.+. ++.+. ..+..|.++|..++.-|+..+
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~------------------------------------------ 246 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK------------------------------------------ 246 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCC------------------------------------------
Confidence 999987754 44333 556679999999999999864
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc---eEEEEEEccCCC-EEEEeeCCCcEEEEECCCCce---
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG---RVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYE--- 237 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~--- 237 (817)
.+.++++|+.+.-+|+..+..-.....-..+.. ....++..|-.. .+++|+.|..+++||.+.-..
T Consensus 247 -------~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 247 -------PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred -------cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence 788999999999999986544333233333343 677888998776 789999999999999764222
Q ss_pred ---EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC--C----------eEEEE-eecCcc--Cee
Q 003467 238 ---IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--G----------TLLQA-HSFHKG--DVN 298 (817)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~ 298 (817)
+.++.... ........|.+++|+.++ -|+++-.|-.|+++.-.. | ..+.. +++|.. .|.
T Consensus 320 n~~~~~f~p~h--l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK 397 (559)
T KOG1334|consen 320 NGVLDKFCPHH--LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK 397 (559)
T ss_pred cchhhhcCCcc--ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccc
Confidence 12222110 011456789999999777 677777788899985432 3 23333 778864 466
Q ss_pred EEEE-ecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 299 ALAA-APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 299 ~l~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
.+-| -|...++++|+.-|.|.+|+-.+++ .+..+.+-.+-|+||.-. |
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-----------------ii~~MegDr~VVNCLEpH---------P----- 446 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-----------------IIRFMEGDRHVVNCLEPH---------P----- 446 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecchhH-----------------HHHHhhcccceEeccCCC---------C-----
Confidence 6664 5788999999999999999999988 566777777778888654 2
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
.-++|++.|.|..|+||...+.
T Consensus 447 -------------------~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 447 -------------------HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred -------------------CCchhhccCCccceeeecCCcc
Confidence 2259999999999999987543
No 205
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7e-14 Score=142.90 Aligned_cols=552 Identities=12% Similarity=0.057 Sum_probs=303.8
Q ss_pred ceeeeeeccCCCceEEEEECCC------------CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee
Q 003467 3 IYRNSSIDWKPSPVVALATSAD------------DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH 70 (817)
Q Consensus 3 ~hr~r~~~~h~~~I~~la~spd------------g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~ 70 (817)
..+...++-|++.|+.+.|+|- .-+||++...|.|.|||...+. .+..+. |+..+|..++|-+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s----~~~~l~-~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS----VINWLS-HSNDSVQDLCWVP 119 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh----hhhhhc-CCCcchhheeeee
Confidence 3455667889999999999872 2378999999999999999876 244444 4488999999988
Q ss_pred cCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccc
Q 003467 71 AGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 150 (817)
Q Consensus 71 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (817)
...- +...|+......+|.+|+..+|+.....+.-.....|+.+.|....
T Consensus 120 ~rd~--Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r---------------------------- 169 (1062)
T KOG1912|consen 120 ARDD--SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR---------------------------- 169 (1062)
T ss_pred ccCc--chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc----------------------------
Confidence 6432 2234777788889999999999999888877777788999887643
Q ss_pred cccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc----eeEeeccCCc----------------cc------
Q 003467 151 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE----LIYHRSLPRV----------------SG------ 204 (817)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~h----------------~~------ 204 (817)
.+..-+..|.+.+-+.-...+ .+..+.-..| +.
T Consensus 170 ---------------------h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 170 ---------------------HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ---------------------eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 222222223333322210000 0000000011 00
Q ss_pred ---eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC---eEEEEcCCCcEEE
Q 003467 205 ---RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQF 278 (817)
Q Consensus 205 ---~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~s~~~dg~i~i 278 (817)
-...++|+|.-+.++.......+.++|++-..++..+.. ..+.+--+.+.|++ .|.+...+|.+.+
T Consensus 229 fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 012367788877777777788999999999999988884 45556677888888 4899999999999
Q ss_pred EeCCCC----------------eEEEEeec-CccCeeEEEEecC-CCEEEEEccCCcEEEEEeecccCCCCCCCCCcc--
Q 003467 279 WDSRHG----------------TLLQAHSF-HKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIGPNDGLSSSE-- 338 (817)
Q Consensus 279 wd~~~~----------------~~~~~~~~-h~~~v~~l~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-- 338 (817)
|--+.. .....+.. .+..+...+..|. .+.++.--.+|.+.+|.+.+++..........+
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 976541 11111111 1112222233343 333444456788899998866531111000000
Q ss_pred ------------ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC
Q 003467 339 ------------VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD 406 (817)
Q Consensus 339 ------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 406 (817)
...+...+..-..|+....+....+. |.- ...+++. ..+....-.++++.|..
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~-------p~~-----t~~~~~p---~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPM-------PEL-----TKVENDP---GGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccC-------ccc-----ceeecCC---CCCccceeeeeEEeecC
Confidence 00111111122334444444433210 000 0000000 00011112358999999
Q ss_pred CCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC-----------CeEEEEEecccCCcccCCCCC
Q 003467 407 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-----------CRLDILSVRLENNVESRSSSG 475 (817)
Q Consensus 407 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----------~~i~i~~~~~~~~~~~~~~~~ 475 (817)
.|+|.++|+.+...... ...+...+.++.|-....++..+. +.+.+-++.++-..
T Consensus 446 sGTV~vvdvst~~v~~~-------fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk------- 511 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAAS-------FSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK------- 511 (1062)
T ss_pred CceEEEEEecchhhhhh-------hcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-------
Confidence 99999999987653322 233556667777766666554322 23444444444321
Q ss_pred CCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEe-cCCC
Q 003467 476 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-YDSS 553 (817)
Q Consensus 476 g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs-pd~~ 553 (817)
....+..+.+..|..+..|.-|+++++. .+.-+.+|++.. ...+ +.+....+-++.+.|+ |.-.
T Consensus 512 ------~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt---~~~l-----r~mS~a~P~it~leWsl~~~~ 577 (1062)
T KOG1912|consen 512 ------RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT---LRML-----RLMSLALPLITVLEWSLPKHP 577 (1062)
T ss_pred ------ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc---chHH-----HHHhhcCCcEEEEeecccCCC
Confidence 2333445566789999999999999995 667778888753 1111 1222233358888887 3322
Q ss_pred ----------------EEEEEecCCcEEEEEcc-CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCc
Q 003467 554 ----------------QLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 616 (817)
Q Consensus 554 ----------------~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 616 (817)
..+..+ +..+++.+. .+......... ...-......+..|+| .+..|+.|+.+|+
T Consensus 578 si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~a~~~sdgsq~----~~a~esfafal~~mAw--k~d~lv~GD~~GN 649 (1062)
T KOG1912|consen 578 SIKQKELSKQSSMSENLVVLDS--VESRIYHITLSALVVSDGSQV----NTAWESFAFALCAMAW--KDDILVVGDVEGN 649 (1062)
T ss_pred Ccccccchhhhhhhhceeeecc--ccchheehhhhhhhhccccch----hhHHHHHHHHHHhhhc--cCCeeEeecccCc
Confidence 222222 122223221 11111000000 0000001223344677 5669999999999
Q ss_pred EEEEECCCcceEEEEecCCC-CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 617 VYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 617 i~vwd~~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
+.+||+...+.+......+. ....-..+-|.++ .+++--.|+ +-+||-+...+
T Consensus 650 l~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~-~~lvl~~d~-~~lwdtk~~~l 703 (1062)
T KOG1912|consen 650 LVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDH-TTLVLELDW-LPLWDTKADTL 703 (1062)
T ss_pred eeEEecccccccCccCCCCchhhheecccCCCCc-eEEEEecCc-ceeccccccee
Confidence 99999865543322211111 1222233445333 333434444 66676655543
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.5e-15 Score=142.45 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=150.1
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
.+++|+++|..|++++.||.+|+|+..+.. .+.....|...|.+|.|+ ||++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----------------t~l~e~~~~~eV~DL~FS---------~dgk-- 199 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----------------TILEEIAHHAEVKDLDFS---------PDGK-- 199 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----------------hhhhhHhhcCccccceeC---------CCCc--
Confidence 789999999999999999999999987776 566778899999999998 9998
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeE
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i 457 (817)
.|++-+.| ..++|+.++...+.....
T Consensus 200 ----------------------~lasig~d-~~~VW~~~~g~~~a~~t~------------------------------- 225 (398)
T KOG0771|consen 200 ----------------------FLASIGAD-SARVWSVNTGAALARKTP------------------------------- 225 (398)
T ss_pred ----------------------EEEEecCC-ceEEEEeccCchhhhcCC-------------------------------
Confidence 99999999 999999987532211100
Q ss_pred EEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCC---c-EEEEE--cCCceEEEEeecCCCCCceEEE
Q 003467 458 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---M-LFAYS--DHVKPSLFELKKGKVGQGEWII 531 (817)
Q Consensus 458 ~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g---~-~la~~--~~~~i~l~~~~~~~~~~~~~~~ 531 (817)
...+..+..+.|+.|+ . ++++. ..+.+..|++..-... .+.
T Consensus 226 ------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l-- 272 (398)
T KOG0771|consen 226 ------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL-- 272 (398)
T ss_pred ------------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc--
Confidence 0001222333344444 1 22222 3366666666542222 221
Q ss_pred eeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 532 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 532 ~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
+..+.......|++++.|+||+++|.|+.||.|-|++..+.+.++-++.. |...|+.+.|+||.+++++.
T Consensus 273 ~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a----------H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA----------HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh----------heeeeeeEEEcCCcCccccc
Confidence 11223333447999999999999999999999999999988888777754 99999999999999999999
Q ss_pred eCCCcEEEEECCC
Q 003467 612 NCFGDVYIFNLEI 624 (817)
Q Consensus 612 ~~dg~i~vwd~~~ 624 (817)
+.+....|..+.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999887754
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.4e-16 Score=150.29 Aligned_cols=201 Identities=21% Similarity=0.175 Sum_probs=153.0
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY 96 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~ 96 (817)
.++||++||..||+|+.||.++||++.... .+.....| .+.|.+|.|||||++ |++.+.| ..+||+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~----t~l~e~~~-~~eV~DL~FS~dgk~------lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML----TILEEIAH-HAEVKDLDFSPDGKF------LASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch----hhhhhHhh-cCccccceeCCCCcE------EEEecCC-ceEEEEec
Confidence 789999999999999999999999977655 25566666 589999999999999 9999999 89999999
Q ss_pred CCeEEEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 97 DLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 97 ~~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
+|.+++.... .......+.|+.|+.+... ...+
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l---------------------------------------------~laa 250 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETL---------------------------------------------RLAA 250 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceE---------------------------------------------EEEE
Confidence 9987766652 2344566777777632110 1333
Q ss_pred EEeCCCcEEEEEecCCCc---eeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 175 LACDDGCVRIYRITDSDE---LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
....-+.|+.|++..... +.. +....-...|.+++.++||++++.|+.||.|-|++..+-+.++-.+. .
T Consensus 251 ~~~~~~~v~~~~~~~w~~~~~l~~-~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~-------a 322 (398)
T KOG0771|consen 251 SQFPGGGVRLCDISLWSGSNFLRL-RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE-------A 322 (398)
T ss_pred ecCCCCceeEEEeeeeccccccch-hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh-------h
Confidence 444566777777762211 111 22222234799999999999999999999999999998888877764 7
Q ss_pred CceeEEEeEEecCC-eEEEEcCCCcEEEEeCC
Q 003467 252 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSR 282 (817)
Q Consensus 252 ~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~ 282 (817)
|...|+.+.|+||. .+++.+.+....+..+.
T Consensus 323 H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 323 HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred heeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999999998 57777777776666554
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.1e-15 Score=157.63 Aligned_cols=232 Identities=18% Similarity=0.164 Sum_probs=159.2
Q ss_pred CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---CeEEEEECCCCeEEEEEeecCce
Q 003467 34 DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFS 110 (817)
Q Consensus 34 dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~ 110 (817)
+..|.|||..... ...+..+ ...+.+++|||||+. |+.++.+ ..|.+||+.+++.... ....+.
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~-~~~v~~p~wSPDG~~------la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRS-SQPLMSPAWSPDGSK------LAYVSFENKKSQLVVHDLRSGARKVV-ASFRGH 249 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccC-CCccccceEcCCCCE------EEEEEecCCCcEEEEEeCCCCceEEE-ecCCCc
Confidence 4689999987654 3445555 568999999999987 8877643 4799999998864322 222233
Q ss_pred EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEE-eCCCcEEEEEec-
Q 003467 111 IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALA-CDDGCVRIYRIT- 188 (817)
Q Consensus 111 i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~- 188 (817)
...++|+|||. .|+.+ ..+|.+.||.+.
T Consensus 250 ~~~~~wSPDG~--------------------------------------------------~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 250 NGAPAFSPDGS--------------------------------------------------RLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cCceeECCCCC--------------------------------------------------EEEEEEecCCcEEEEEEEC
Confidence 44689999994 56554 467876666443
Q ss_pred CCCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECCCC-ceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 189 DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 189 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
.+..+ +.+..+...+.+.+|+|||+.|+..+ .+|...||++... .....+. +.. ....|+|||
T Consensus 280 ~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~---------~~~--~~~~~SpDG~ 345 (429)
T PRK01742 280 NGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG---------GRG--YSAQISADGK 345 (429)
T ss_pred CCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec---------CCC--CCccCCCCCC
Confidence 12333 45666777888999999999877665 5688888876532 2222221 222 356899999
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec--ccCCCCCCCCCccccceE
Q 003467 266 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC--ESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~ 343 (817)
.++..+.+ .+.+||+.+++....... .....++|+|||++|++++.++.+.+|.+.. +.
T Consensus 346 ~ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---------------- 406 (429)
T PRK01742 346 TLVMINGD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---------------- 406 (429)
T ss_pred EEEEEcCC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----------------
Confidence 56666655 466799998875433222 2345688999999999999999998888753 33
Q ss_pred EEeeccccCCCccceeEee
Q 003467 344 IYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~ 362 (817)
....+..|...+...+|+
T Consensus 407 -~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 407 -FKARLPGSDGQVKFPAWS 424 (429)
T ss_pred -ceEEccCCCCCCCCcccC
Confidence 455667788888888886
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.1e-15 Score=161.93 Aligned_cols=221 Identities=18% Similarity=0.139 Sum_probs=157.5
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
.+.+..|...+.+.+|||||++||.++.+ ..|.+||+.+++. .+...+.++ ..+++|+|||+. |+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~----~~~~~wSPDG~~------La 263 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGH----NGAPAFSPDGSR------LA 263 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCc----cCceeECCCCCE------EE
Confidence 45566778889999999999999987643 4699999988752 122233333 347899999987 77
Q ss_pred Eee-CCCeEEEE--ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 83 SSS-IDGSVSEW--DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 83 s~~-~d~~i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
.++ .+|.+.+| |+.+++ ...+..+...+...+|+|||.
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~-------------------------------------- 304 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQ-------------------------------------- 304 (429)
T ss_pred EEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCC--------------------------------------
Confidence 654 57765555 666665 455666777788999999994
Q ss_pred ccccccccccCCEEE-EEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 160 DELHEQSVVEDRRVA-LACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
.|+ ++..+|...||++....... ..+ .+.+ .+.+|+|||++|+..+.+ .+.+||+.+|+..
T Consensus 305 ------------~i~f~s~~~g~~~I~~~~~~~~~~--~~l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~ 366 (429)
T PRK01742 305 ------------SILFTSDRSGSPQVYRMSASGGGA--SLV-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTE 366 (429)
T ss_pred ------------EEEEEECCCCCceEEEEECCCCCe--EEe-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeE
Confidence 444 44567888999886332221 222 3333 467899999999988876 4666999888754
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeC--CCCeEEEEeecCccCeeEEEEecC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
. +.. .. ....+.|+||| .|+.++.++.+.+|++ .+|+.++.+..|.+.+..++|+|-
T Consensus 367 ~-lt~-------~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 V-LSS-------TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred E-ecC-------CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 3 221 11 23567899999 6888888888888775 358888999888999999999984
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=2.6e-14 Score=145.68 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=196.2
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEe
Q 003467 267 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV 346 (817)
Q Consensus 267 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (817)
+++-..+|.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+ .+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-----------------~v 71 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-----------------VV 71 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-----------------EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-----------------EE
Confidence 4566778999999999999999998755444557899999999999999999999999988 56
Q ss_pred eccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE-ecCCCeEEEEeCCcccccCCcc
Q 003467 347 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS-AGDDTKLFAYCANEFTKFSPHE 425 (817)
Q Consensus 347 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~~~~~~~~~~~~~~~ 425 (817)
.+++.-. ...+++++ +||+ ++++ ...++.+.++|..+.+......
T Consensus 72 ~~i~~G~-~~~~i~~s---------~DG~------------------------~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 72 ATIKVGG-NPRGIAVS---------PDGK------------------------YVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEE-SS-EEEEEEE-----------TTT------------------------EEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCC-CcceEEEc---------CCCC------------------------EEEEEecCCCceeEeccccccceeecc
Confidence 6665543 35778887 8887 6555 4578999999999877665443
Q ss_pred cCCCCCCCceeeecceeecCCeE-EEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc
Q 003467 426 ICPAPQRVPIHLVHNTIFSHTSL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 504 (817)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 504 (817)
....+.......+..+..++.+. +++.-...-++|.++..... .+.....+.........++|+|+
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-------------~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-------------NLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-------------CEEEEEEE--TTEEEEEE-TTSS
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-------------ccceeeecccccccccccCcccc
Confidence 33222222334445555566555 55555555667766544321 12222233346677899999999
Q ss_pred EEEEE--cCCceEEEEeecCCCCCceEEEeeecCCccccceeE-------EEE--ecCCCEEEEEecCCcEEEEEccCCc
Q 003467 505 LFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHS-------MIF--SYDSSQLIIAGHDRRIYVVDVSSSE 573 (817)
Q Consensus 505 ~la~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~f--spd~~~l~~~~~dg~i~v~d~~~~~ 573 (817)
++.++ ..+.+-+++... ......+.....+ |..+... ..| +..+...++.-....+.+||..+++
T Consensus 185 y~~va~~~sn~i~viD~~~---~k~v~~i~~g~~p-~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKT---GKLVALIDTGKKP-HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT---TEEEEEEE-SSSB-EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred eeeecccccceeEEEeecc---ceEEEEeeccccc-cccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 87764 446777777654 2222222222111 1111111 112 2233333233333457788989999
Q ss_pred eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE----eCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCC
Q 003467 574 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV----NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 649 (817)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~ 649 (817)
.++++.. .... ..+..+||+++|.+. ...+.|.|+|.++.+....+....+..+..+.|++ ||
T Consensus 261 vv~~I~~-----------~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG 327 (369)
T PF02239_consen 261 VVKTIPT-----------QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DG 327 (369)
T ss_dssp EEEEEE------------SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TS
T ss_pred EEEEEEC-----------CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CC
Confidence 9999986 3444 788899999999998 45578999999999876666543434699999999 99
Q ss_pred CeEEEEecCC--eEEEEEcCCCcc
Q 003467 650 NVLIITTSSN--QVYVFDVEAKQL 671 (817)
Q Consensus 650 ~~l~~~~~d~--~i~vwd~~~~~~ 671 (817)
+.+.++..++ .|.+||..+.++
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEE
T ss_pred CEEEEEEecCCCEEEEEECCCcEE
Confidence 8776665443 699999999886
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.2e-14 Score=151.66 Aligned_cols=275 Identities=18% Similarity=0.171 Sum_probs=194.9
Q ss_pred CeEEEEECCCC-eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 88 GSVSEWDLYDL-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 88 ~~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
+.+.+|++... .+...+. -...|.++.|+|....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~-------------------------------------------- 256 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPN-------------------------------------------- 256 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcc--------------------------------------------
Confidence 47999999876 4444444 4678999999998853
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCc--ee-EeeccCCccceEEEEEEccCCCE--EEEeeCCCcEEEEECCCCceEEEE
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDE--LI-YHRSLPRVSGRVLSVTWSADGNM--LYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~--~~-~~~~~~~h~~~v~~v~~s~dg~~--l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
++|.|+.+|+|.+||+..+.. .. .......|...++.+.|..+-.- +++++.||.|..|+++.-......
T Consensus 257 -----ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 257 -----LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred -----eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 899999999999999985544 11 11233468899999999765554 999999999999987654332111
Q ss_pred Eeec----CCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEe---CCCC-----eEEEEeecCccCeeEEEEecCCC
Q 003467 242 TVGL----GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWD---SRHG-----TLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 242 ~~~~----~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd---~~~~-----~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
.... .+........+.++.|.+.. .++.|+.+|.|.--+ ...+ +.+..+..|.+.|.++.++|-+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 1100 01122455678899999876 799999999987733 2222 22345667899999999999887
Q ss_pred EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcc
Q 003467 308 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 387 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
.++..+.|-++++|....... .+..+..+...|.+++|+ |-.
T Consensus 412 k~fls~gDW~vriWs~~~~~~----------------Pl~~~~~~~~~v~~vaWS---------ptr------------- 453 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIAS----------------PLLSLDSSPDYVTDVAWS---------PTR------------- 453 (555)
T ss_pred ceeeeeccceeEeccccCCCC----------------cchhhhhccceeeeeEEc---------CcC-------------
Confidence 777666699999999873221 455667777779999997 332
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCC
Q 003467 388 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENN 467 (817)
Q Consensus 388 ~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~ 467 (817)
...++++..||.|.+||+.....-.
T Consensus 454 ----------pavF~~~d~~G~l~iWDLl~~~~~P--------------------------------------------- 478 (555)
T KOG1587|consen 454 ----------PAVFATVDGDGNLDIWDLLQDDEEP--------------------------------------------- 478 (555)
T ss_pred ----------ceEEEEEcCCCceehhhhhccccCC---------------------------------------------
Confidence 2489999999999999997533110
Q ss_pred cccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC-CceEEEEeec
Q 003467 468 VESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH-VKPSLFELKK 521 (817)
Q Consensus 468 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~-~~i~l~~~~~ 521 (817)
+...... ......+.++++|++|++|+. |.+.+|++..
T Consensus 479 ---------------v~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 ---------------VLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ---------------ccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 1111111 244566778899999999854 9999999863
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.5e-13 Score=128.92 Aligned_cols=179 Identities=16% Similarity=0.215 Sum_probs=128.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC--CcEEEEECCCCceEEEEEeecCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d--g~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
..|..|+.||. ++|........ .........|.-+-|+.. ++|..+.+ ..+++.+...+..+..+.
T Consensus 18 ~~lsvGs~~Gy-k~~~~~~~~k~---~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------ 85 (391)
T KOG2110|consen 18 TLLSVGSKDGY-KIFSCSPFEKC---FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF------ 85 (391)
T ss_pred eEEEccCCCce-eEEecCchHHh---hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe------
Confidence 37788888875 77877643332 222223346777788754 55555544 459999999888888886
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec---CccCeeEEEEecCCCEEEEE--ccCCcEEEEEe
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDVNALAAAPSHNRVFST--GSDGQVILYKA 323 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~~~--~~dg~i~iw~~ 323 (817)
....|.++.+..+..+|+--+ .|.|||+++.+++.++.. +...+.++++++++.+++.- ...|.|.+||.
T Consensus 86 ---fpt~IL~VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 ---FPTSILAVRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred ---cCCceEEEEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 667889999877665554443 399999999999888754 34456667777777788863 33789999999
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.+-+ .+..+..|.+.+.+|+|+ ++|. +|++
T Consensus 161 ~nl~-----------------~v~~I~aH~~~lAalafs---------~~G~------------------------llAT 190 (391)
T KOG2110|consen 161 INLQ-----------------PVNTINAHKGPLAALAFS---------PDGT------------------------LLAT 190 (391)
T ss_pred ccce-----------------eeeEEEecCCceeEEEEC---------CCCC------------------------EEEE
Confidence 8877 677888999989888887 7776 8888
Q ss_pred ecCCCeE-EEEeCC
Q 003467 404 AGDDTKL-FAYCAN 416 (817)
Q Consensus 404 ~~~dg~i-~~~~~~ 416 (817)
++..|+| +++.+.
T Consensus 191 ASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVP 204 (391)
T ss_pred eccCceEEEEEEcC
Confidence 8877744 455443
No 213
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=3.9e-13 Score=142.89 Aligned_cols=190 Identities=17% Similarity=0.210 Sum_probs=152.3
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCce-EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFS-IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
.+++.+..+..+.+||+..+.....+.+.... ..++..--++...
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~---------------------------------- 145 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE---------------------------------- 145 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE----------------------------------
Confidence 45888888889999999888776666533321 1222222222110
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 237 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~ 237 (817)
-++++|+.-+.|.+|+....+.. ..+.+|++.|.++.|+.||+++++.++|.++|+|++.+.+.
T Consensus 146 -------------~~i~~gsv~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 146 -------------LYIASGSVFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred -------------EEEEeccccccEEEEeccccCCc---ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 28999999999999999843333 36889999999999999999999999999999999999887
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCcc-CeeEEEEecCCCEEEEEccCC
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG-DVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~~~~~dg 316 (817)
.... ..+|...||.+.|+|+ .+++++.|.+.++|+.+ ++.+..+..|.. .|..++..++...+++++.|+
T Consensus 210 ~~~~-------~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 210 LGCT-------GFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred cCcc-------cccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 7622 2279999999999999 99999999999999776 666778888864 589999999999999999999
Q ss_pred cEEEEEeeccc
Q 003467 317 QVILYKASCES 327 (817)
Q Consensus 317 ~i~iw~~~~~~ 327 (817)
.+++|++....
T Consensus 281 ~lk~~~l~~r~ 291 (967)
T KOG0974|consen 281 TLKLWDLNGRG 291 (967)
T ss_pred chhhhhhhccc
Confidence 99999987654
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.5e-13 Score=126.35 Aligned_cols=179 Identities=12% Similarity=0.149 Sum_probs=129.2
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
..|.+||-...... ..-.....+.++.++++..+++. .+.+.+|.+... ++++..+.
T Consensus 75 NkviIWDD~k~~~i--------~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n--------------~k~l~~~e 131 (346)
T KOG2111|consen 75 NKVIIWDDLKERCI--------IELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDN--------------PKLLHVIE 131 (346)
T ss_pred ceEEEEecccCcEE--------EEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCC--------------hhheeeee
Confidence 48999994332211 11123456777888777655544 478999988733 34555555
Q ss_pred ecCCC-CeEEEEecCCCcEEEE-E-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCc-
Q 003467 488 SKASR-KIICSTISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR- 563 (817)
Q Consensus 488 ~~~~~-~i~~~~~s~~g~~la~-~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~- 563 (817)
...+. .+.+++-..+..+||. | .-|.+++-++.....+ ....++.|...|.+++.+.+|..+|+++..|+
T Consensus 132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL 205 (346)
T KOG2111|consen 132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQGTLVATASTKGTL 205 (346)
T ss_pred cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCccEEEEeccCcEE
Confidence 44322 2444444445566777 4 3499999999763322 12456788999999999999999999999986
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 624 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 624 (817)
|+|||..+|+.+..++-.. ....|.+++||||+.|||++++.|+|+||.+..
T Consensus 206 IRIFdt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 206 IRIFDTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 8999999999999987422 367899999999999999999999999999864
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=3.8e-13 Score=137.25 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=185.0
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.+++-..+|.|.+.|..+.+.+ ..+......-..++|+|||+++++++.||.|.++|+.+++.+.++..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~---~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-------- 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVV---ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-------- 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEE---EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------
T ss_pred EEEEecCCCEEEEEECCCCeEE---EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------
Confidence 4456677999999999876666 45544333445678999999999999999999999999999999984
Q ss_pred CceeEEEeEEecCC-eEE-EEcCCCcEEEEeCCCCeEEEEeecC-------ccCeeEEEEecCCCEEEEEcc-CCcEEEE
Q 003467 252 PELCIWSLLSLRCG-TLV-SADSTGSVQFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGS-DGQVILY 321 (817)
Q Consensus 252 ~~~~v~~v~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~~~~~-dg~i~iw 321 (817)
......+++++|| +++ +....+.+.++|.++.+.++.+... ...+.++..+|....++.+-. .+.|.+.
T Consensus 77 -G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 77 -GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred -CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 3346789999999 444 4456899999999999999887653 245678888888885555444 5777777
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
|...... .......-........+. |+++ -++
T Consensus 156 dy~d~~~----------------~~~~~i~~g~~~~D~~~d---------pdgr-----------------------y~~ 187 (369)
T PF02239_consen 156 DYSDPKN----------------LKVTTIKVGRFPHDGGFD---------PDGR-----------------------YFL 187 (369)
T ss_dssp ETTTSSC----------------EEEEEEE--TTEEEEEE----------TTSS-----------------------EEE
T ss_pred Eeccccc----------------cceeeecccccccccccC---------cccc-----------------------eee
Confidence 7655431 111111111122334554 6665 234
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccc
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 481 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~ 481 (817)
+....+..+.++|..+.+.... +..+.... +.
T Consensus 188 va~~~sn~i~viD~~~~k~v~~--------------------------------------i~~g~~p~----------~~ 219 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVAL--------------------------------------IDTGKKPH----------PG 219 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEE--------------------------------------EE-SSSBE----------ET
T ss_pred ecccccceeEEEeeccceEEEE--------------------------------------eecccccc----------cc
Confidence 4456677888888876432111 11100000 00
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEE--EEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE-
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLF--AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA- 558 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~l--a~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~- 558 (817)
....+.......+.. .+..+.+. +++.+ .+.+++... |++- .+++....+ .-+.-+||++++.+.
T Consensus 220 ~~~~~php~~g~vw~--~~~~~~~~~~~ig~~-~v~v~d~~~-------wkvv-~~I~~~G~g-lFi~thP~s~~vwvd~ 287 (369)
T PF02239_consen 220 PGANFPHPGFGPVWA--TSGLGYFAIPLIGTD-PVSVHDDYA-------WKVV-KTIPTQGGG-LFIKTHPDSRYVWVDT 287 (369)
T ss_dssp TEEEEEETTTEEEEE--EEBSSSSEEEEEE---TTT-STTTB-------TSEE-EEEE-SSSS---EE--TT-SEEEEE-
T ss_pred ccccccCCCcceEEe--eccccceecccccCC-ccccchhhc-------CeEE-EEEECCCCc-ceeecCCCCccEEeec
Confidence 011111111111111 11112221 12222 222332211 1111 112222223 667779999999988
Q ss_pred ---ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC--CCcEEEEECCCcceEEEEe
Q 003467 559 ---GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFIS 632 (817)
Q Consensus 559 ---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~--dg~i~vwd~~~~~~~~~~~ 632 (817)
...++|.++|.++.+.+.++... ....+.++.|++||+++..+.. ++.|.|||..+.+....++
T Consensus 288 ~~~~~~~~v~viD~~tl~~~~~i~~~----------~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 288 FLNPDADTVQVIDKKTLKVVKTITPG----------PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TT-SSHT-EEEEECCGTEEEE-HHHH----------HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEEECcCcceeEEEecc----------CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 44579999999999888887641 1235999999999996655544 4469999999999888776
No 216
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.4e-13 Score=140.79 Aligned_cols=465 Identities=13% Similarity=0.128 Sum_probs=283.7
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
.-.++.|+|.| |+.-+....|.+.|..+.+.++.+.-|...|..+.|.|....-.
T Consensus 17 N~~A~Dw~~~G--------LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~----------------- 71 (1062)
T KOG1912|consen 17 NRNAADWSPSG--------LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRD----------------- 71 (1062)
T ss_pred cccccccCccc--------eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchh-----------------
Confidence 35678899987 45444556899999999999999999999999999999762110
Q ss_pred CCCCCCccccccCCCCCCcccccccc-ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc---CC-C
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSV-VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA---DG-N 216 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg-~ 216 (817)
..+. +..-+||++...|.|.+||...+... ..+..|...+..++|-+ +. .
T Consensus 72 ----------------------llS~~~~~lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 72 ----------------------LLSPSSSQLLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred ----------------------ccCccccceeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchh
Confidence 0000 12248899999999999999866554 66788889999999965 33 4
Q ss_pred EEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCC-------CCeEE
Q 003467 217 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR-------HGTLL 287 (817)
Q Consensus 217 ~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~-------~~~~~ 287 (817)
.|++-..-.+|.+||..+|+...+.. .......++.+.|-. .+..-+..|.+.+-+.- .|+..
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~--------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYD--------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccc--------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 66666677799999999999998887 344556667777644 45555666666665432 13333
Q ss_pred EEeecCcc-------------------------CeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccce
Q 003467 288 QAHSFHKG-------------------------DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK 342 (817)
Q Consensus 288 ~~~~~h~~-------------------------~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (817)
+.-..|.. ....++|+|.-+.++.......+.++|++-..
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~--------------- 263 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC--------------- 263 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---------------
Confidence 33332221 02235678877666666678889999998776
Q ss_pred EEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccC
Q 003467 343 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 422 (817)
Q Consensus 343 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~ 422 (817)
++.......+.+.-+.+- |+.+ .+.|++.-.||.+.+|-.+......
T Consensus 264 --~l~vvpier~~akfv~vl---------P~~~----------------------rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 264 --CLAVVPIERGGAKFVDVL---------PDPR----------------------RDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred --eeEEEEeccCCcceeEec---------cCCC----------------------cceEEEEecCCeEEEEEeeccCccc
Confidence 555655555666666665 5553 3589999999999999776522111
Q ss_pred Cc--------------ccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeee
Q 003467 423 PH--------------EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS 488 (817)
Q Consensus 423 ~~--------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 488 (817)
.. -+++.....+. ...++-..|+-..+...++...+|.+..+........ + ..++..
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s--~------~iel~~ 381 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS--S------SIELVL 381 (1062)
T ss_pred cccchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc--c------cccccc
Confidence 10 00000000000 0001111233334444556777777765432210000 0 000000
Q ss_pred cCCCCeEEEEecCCCcEEEEEcCCceEEEEeec---CCCCCceEEEeeecCCccccceeEEEEecCC-------CEEEEE
Q 003467 489 KASRKIICSTISNSGMLFAYSDHVKPSLFELKK---GKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-------SQLIIA 558 (817)
Q Consensus 489 ~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~-------~~l~~~ 558 (817)
.|+-++.-+.++.. .+-++.. ...|....... ..+ ..+-..-.|-+ ..+|.|
T Consensus 382 ---------pf~f~~~~~~v~k~---~l~~LS~dg~h~sGs~~~~~~--p~p----~~t~~~~~p~~n~~~~~~pLvAvG 443 (1062)
T KOG1912|consen 382 ---------PFDFNLSTKLVGKT---SLISLSDDGSHSSGSTCVRMR--PMP----ELTKVENDPGGNTPAGTVPLVAVG 443 (1062)
T ss_pred ---------cccccCceeehhhc---cccchhhcCCCCCCceeeecc--cCc----ccceeecCCCCCccceeeeeEEee
Confidence 01111111111100 0111110 00111110000 000 01111111111 367899
Q ss_pred ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe---------CCCcEEEEECCCcceEE
Q 003467 559 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---------CFGDVYIFNLEIQRQHW 629 (817)
Q Consensus 559 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---------~dg~i~vwd~~~~~~~~ 629 (817)
+..|+|.++|+.++..-+.|.. |...|.++.|--...++-.+. .-+.+.|-|+.+|....
T Consensus 444 T~sGTV~vvdvst~~v~~~fsv-----------ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 444 TNSGTVDVVDVSTNAVAASFSV-----------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR 512 (1062)
T ss_pred cCCceEEEEEecchhhhhhhcc-----------cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence 9999999999999998888888 899999999976665543332 22357788998886543
Q ss_pred E--EecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 630 F--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 630 ~--~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
. ++....++|+.+..|. .+.+|++...|.-+.+||+++..+
T Consensus 513 fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 513 FRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred cccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchH
Confidence 2 2455558999999999 999999999999999999977654
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=136.23 Aligned_cols=310 Identities=13% Similarity=0.084 Sum_probs=199.0
Q ss_pred eeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC
Q 003467 196 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG 274 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg 274 (817)
.+.+.+|.+-|.++.|+.++++|++|+.|..+++|++... ...+...+.+-....|...|.+++|...+ .+.+|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~-~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDEL-MVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHH-HhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3667899999999999999999999999999999998532 11111111111223677899999998777 689999999
Q ss_pred cEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC
Q 003467 275 SVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 352 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (817)
+|...|+++.+.+..+.. ..+.|+.+..+|-.+.+++.+.++.|.+||......... + ..+...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-------------~-~~~AN~ 193 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-------------L-VLPANS 193 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc-------------e-eeecCC
Confidence 999999999988877743 335899999999999999999999999999876542110 0 001111
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
......+.|. |. ...+|++.+..+-+-+||..................
T Consensus 194 ~~~F~t~~F~---------P~-----------------------~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 194 GKNFYTAEFH---------PE-----------------------TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred Cccceeeeec---------CC-----------------------CceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 1122233333 22 224888999999999999976432211110000000
Q ss_pred CceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCccceeeeeeecCC-------CCeEEEEecCCC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS-------RKIICSTISNSG 503 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~i~~~~~s~~g 503 (817)
.....--++.|+|+|..+..-.. .--++++....+. -++..+. ..+.+++|-.|-
T Consensus 242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~----------------V~k~D~N~~GY~N~~T~KS~~F~~D~ 305 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF----------------VLKSDHNPNGYCNIKTIKSMTFIDDY 305 (609)
T ss_pred ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce----------------eEeccCCCCcceeeeeeeeeeeecce
Confidence 00111135678888765543322 2333444332211 1222211 235566676665
Q ss_pred cEEEEE-cCCceEEEEeecCCCCCc---------------eEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEE
Q 003467 504 MLFAYS-DHVKPSLFELKKGKVGQG---------------EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 567 (817)
Q Consensus 504 ~~la~~-~~~~i~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~ 567 (817)
. +++| ++-.+++|.+.......- +..-.-..+.+|..-+..+.|+|....|++.+-...++||
T Consensus 306 ~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 306 T-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred e-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 5 6665 558899999975322111 1011113467788889999999999999999999999999
Q ss_pred Ec
Q 003467 568 DV 569 (817)
Q Consensus 568 d~ 569 (817)
.-
T Consensus 385 S~ 386 (609)
T KOG4227|consen 385 SD 386 (609)
T ss_pred cc
Confidence 75
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=5.5e-14 Score=151.08 Aligned_cols=259 Identities=18% Similarity=0.179 Sum_probs=179.3
Q ss_pred eeeeccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCC---CCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 6 NSSIDWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGT---SGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~---~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
+-.+.-|...|..+|.+++. .++++|+.||+|+|||...-. ....+..++.-. ..++.++.+.+.++. +
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~~vt~~~~~~~------~ 1113 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-GSRVEKVTMCGNGDQ------F 1113 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-CCceEEEEeccCCCe------E
Confidence 33456688888899988765 999999999999999987422 224456666533 679999999999988 9
Q ss_pred EEeeCCCeEEEEECCCCe-------EEEEE--eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccc
Q 003467 82 FSSSIDGSVSEWDLYDLK-------QKIVL--QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 152 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~-------~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (817)
|.++.||.|.+.+++..+ +.+.. +..+.-|..-+|......
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S------------------------------ 1163 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS------------------------------ 1163 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc------------------------------
Confidence 999999999999987621 11111 111222223333322210
Q ss_pred cCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 153 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
..|+.+..-+.|..||+........ .......|-|++++.+|.+.+++.|...|.+.+||+
T Consensus 1164 ------------------~~lvy~T~~~~iv~~D~r~~~~~w~-lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1164 ------------------HVLVYATDLSRIVSWDTRMRHDAWR-LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ------------------eeEEEEEeccceEEecchhhhhHHh-hhcCccccceeEEEecCCceEEEEecCCceEEEEEe
Confidence 2788889999999999975444311 122234578999999999999999999999999999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEec---CC-eEEE-Ec-CCCcEEEEeCCCCeEEEEeecC-c-----------
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLR---CG-TLVS-AD-STGSVQFWDSRHGTLLQAHSFH-K----------- 294 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~-~l~s-~~-~dg~i~iwd~~~~~~~~~~~~h-~----------- 294 (817)
+-+..+..... ++..++..+...| .. ..++ +. ..+.|.+|++.+|.+...+... .
T Consensus 1225 RF~~~i~sw~~-------P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~ 1297 (1431)
T KOG1240|consen 1225 RFRVPILSWEH-------PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN 1297 (1431)
T ss_pred ecCceeecccC-------cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc
Confidence 98888877764 3445565555543 22 3444 44 5678999999998766665432 1
Q ss_pred -------cCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 295 -------GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 295 -------~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
-.....++...+..+++|+.|..|+.||.....
T Consensus 1298 ~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1298 DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 111223333345688999999999999987665
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.9e-13 Score=127.50 Aligned_cols=198 Identities=19% Similarity=0.217 Sum_probs=144.6
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee-cCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
+..+..++|++.-.. ++++..|-+|++||-.. ++...++. -...|.+++|-|.+.
T Consensus 98 ~~dlr~~aWhqH~~~------fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa----------------- 153 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIA------FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA----------------- 153 (445)
T ss_pred hcceeeEeechhhhh------hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-----------------
Confidence 457889999986544 88999999999999777 44444543 357899999999874
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCcee-----------EeeccCCccceEE
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI-----------YHRSLPRVSGRVL 207 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~ 207 (817)
..|++||.. .|.||......... ....-.+| ..|+
T Consensus 154 --------------------------------selavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVt 199 (445)
T KOG2139|consen 154 --------------------------------SELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVT 199 (445)
T ss_pred --------------------------------ceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceee
Confidence 378999985 58999876211110 00112234 5899
Q ss_pred EEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC-CC
Q 003467 208 SVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR-HG 284 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~-~~ 284 (817)
+|.|++||..+++++. |..|.|||..+|..+.-.. ...+.+.-+.|+||| .|.++.-|+..++|+.. +.
T Consensus 200 smqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 200 SMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred EEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccc
Confidence 9999999999999886 5789999999998876664 345668889999999 78999999999999544 33
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
....-. ...+.|...+|+|+|++|+.+.. |.-++|.+..
T Consensus 272 t~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 272 TKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred eeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 332222 23568999999999998776533 3345565543
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.4e-12 Score=119.98 Aligned_cols=238 Identities=16% Similarity=0.211 Sum_probs=165.7
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE-eeCC------
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS-SSID------ 87 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s-~~~d------ 87 (817)
....++|+.|..-+|+|..+| .+||+.+.-+... ....... .-.+.-+-| -.++ |+- ||.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~--~r~~~~~-G~~~veMLf--R~N~------laLVGGg~~pky~p 74 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA--SRQFIDG-GFKIVEMLF--RSNY------LALVGGGSRPKYPP 74 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh--hhccccC-chhhhhHhh--hhce------EEEecCCCCCCCCC
Confidence 345599999999999999887 9999988644211 1111111 112222222 1222 443 3332
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
..|.|||=...+++.++. ...+|.++.+.++
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~------------------------------------------------ 105 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD------------------------------------------------ 105 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC------------------------------------------------
Confidence 479999966777777776 5688999999876
Q ss_pred ccCCEEEEEeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECCCCce--EEEEEe
Q 003467 168 VEDRRVALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYE--IYRITV 243 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~g~~--~~~~~~ 243 (817)
++++.-+ +.|+||...+ .+.+....+.. ......+++=+.+..+||.-+ .-|.|.|-|+...+. ...+.
T Consensus 106 ----riVvvl~-~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~- 178 (346)
T KOG2111|consen 106 ----RIVVVLE-NKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN- 178 (346)
T ss_pred ----eEEEEec-CeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-
Confidence 4555554 6899999973 33332222222 222344444444445555533 358999999976655 24444
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc-EEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCcEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~ 319 (817)
.|...|.+++..-+| .+++++..|+ |+|||..+|+.++.++- ..+.|.|++||||+.+|++++..|++.
T Consensus 179 -------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 179 -------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred -------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 699999999999999 6899999998 79999999999999864 346899999999999999999999999
Q ss_pred EEEeeccc
Q 003467 320 LYKASCES 327 (817)
Q Consensus 320 iw~~~~~~ 327 (817)
+|.+....
T Consensus 252 iF~l~~~~ 259 (346)
T KOG2111|consen 252 IFSLRDTE 259 (346)
T ss_pred EEEeecCC
Confidence 99998754
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4e-13 Score=125.36 Aligned_cols=305 Identities=12% Similarity=0.136 Sum_probs=200.3
Q ss_pred ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeC
Q 003467 204 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 281 (817)
Q Consensus 204 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~ 281 (817)
..+..++|++.-.-++++..|-.|++||-.. .+...++. .....|.+++|-|.+ .|+.|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 3577899999766788888899999999765 55556653 467789999999988 577777655 999976
Q ss_pred CC----CeE----------EEEeecCccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEe
Q 003467 282 RH----GTL----------LQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYV 346 (817)
Q Consensus 282 ~~----~~~----------~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (817)
.. ++. +...++| ..|+++.|.+||..+++++. |..|.+||..++. .+
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-----------------~~ 231 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-----------------KI 231 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-----------------cc
Confidence 53 111 1222344 68999999999999999876 7889999999887 22
Q ss_pred eccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCccc
Q 003467 347 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 426 (817)
Q Consensus 347 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~ 426 (817)
.....--+.+.-|.|+ ||+. +|+.+.-|+..++|+.......
T Consensus 232 pL~~~glgg~slLkwS---------Pdgd------------------------~lfaAt~davfrlw~e~q~wt~----- 273 (445)
T KOG2139|consen 232 PLIPKGLGGFSLLKWS---------PDGD------------------------VLFAATCDAVFRLWQENQSWTK----- 273 (445)
T ss_pred cccccCCCceeeEEEc---------CCCC------------------------EEEEecccceeeeehhccccee-----
Confidence 2333445567778887 8875 9999999999999965431100
Q ss_pred CCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEE
Q 003467 427 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF 506 (817)
Q Consensus 427 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 506 (817)
+-|-+ ....+...+++|+|++|
T Consensus 274 -------------------------------erw~l---------------------------gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 274 -------------------------------ERWIL---------------------------GSGRVQTACWSPCGSFL 295 (445)
T ss_pred -------------------------------cceec---------------------------cCCceeeeeecCCCCEE
Confidence 00111 11468888999999999
Q ss_pred EEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccc
Q 003467 507 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD 586 (817)
Q Consensus 507 a~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 586 (817)
.++..+.-.+|.+........ ..+ .++.-....+-|+..- ....+.+-
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~--------~~~------------------~~~~k~~lliaDL~e~---ti~ag~~l--- 343 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSV--------FLR------------------PQSIKRVLLIADLQEV---TICAGQRL--- 343 (445)
T ss_pred EEEEcCCceEEEEeecCCCcc--------ccC------------------cccceeeeeeccchhh---hhhcCccc---
Confidence 998888888888765211111 000 1111222233343211 11111000
Q ss_pred ccCCCCCCceeEEEEccCCCEEEEEeCCC--------cEEEEECCCcceEEEEe-c-CCCCCeEEEEecC--CCCCeEEE
Q 003467 587 REIQPSEPPITKMFTSSDGQWLAAVNCFG--------DVYIFNLEIQRQHWFIS-R-LEGASVTAAGFPP--QNNNVLII 654 (817)
Q Consensus 587 ~~~~~~~~~i~~l~~s~dg~~la~~~~dg--------~i~vwd~~~~~~~~~~~-~-~~~~~i~~l~~sp--~d~~~l~~ 654 (817)
-.+.+.+++|.|.|.+||+.-..+ .|.+||........... . ..+.....+.|+| .++.+|.+
T Consensus 344 -----~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsi 418 (445)
T KOG2139|consen 344 -----CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSI 418 (445)
T ss_pred -----ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEE
Confidence 357789999999999999986544 36677766544333221 1 1123466778877 35667777
Q ss_pred EecCCeEEEEEcCC
Q 003467 655 TTSSNQVYVFDVEA 668 (817)
Q Consensus 655 ~~~d~~i~vwd~~~ 668 (817)
+=+.|.+.-|++.-
T Consensus 419 aWsTGriq~ypl~f 432 (445)
T KOG2139|consen 419 AWSTGRIQRYPLTF 432 (445)
T ss_pred EeccCceEeeeeEE
Confidence 77778787777643
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.1e-14 Score=147.65 Aligned_cols=222 Identities=18% Similarity=0.164 Sum_probs=151.5
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEe---cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAR---EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
..+.+..++..+.+.+|||||++||..+ .+..|.+||+.+++. .....+. +.+.+++|+|||+. |
T Consensus 190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~----~~~~~~~~SPDG~~------L 257 (429)
T PRK03629 190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFP----RHNGAPAFSPDGSK------L 257 (429)
T ss_pred CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCC----CCcCCeEECCCCCE------E
Confidence 3455666778899999999999999754 245799999988762 1112222 33457899999987 7
Q ss_pred EEe-eCCC--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 82 FSS-SIDG--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 82 ~s~-~~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+.. +.+| .|.+||+.+++..+. ..+...+....|+||+.
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~------------------------------------- 299 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQ------------------------------------- 299 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCC-------------------------------------
Confidence 654 4344 599999998876544 33445678899999994
Q ss_pred CccccccccccCCEEEEEeC-CCcEEEE--EecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC---CcEEEEEC
Q 003467 159 SDELHEQSVVEDRRVALACD-DGCVRIY--RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD---GYIRSWDA 232 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~ 232 (817)
.|+..+. ++...|| ++.++. . +.+..+.....+.+|+|||++|+..+.+ ..|.+||+
T Consensus 300 -------------~I~f~s~~~g~~~Iy~~d~~~g~-~---~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 300 -------------NLAYTSDQAGRPQVYKVNINGGA-P---QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred -------------EEEEEeCCCCCceEEEEECCCCC-e---EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 5555444 3444555 554433 2 2333334456678999999999887654 35889999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc---EEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS---VQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
.+++. ..+.. ........|+||| .|+.++.++. +.++++. |.....+..|.+.+...+|+|
T Consensus 363 ~~g~~-~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 363 ATGGV-QVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCe-EEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 88764 33431 1123467899999 5666666654 6777874 777788888888999999987
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.6e-14 Score=137.24 Aligned_cols=251 Identities=15% Similarity=0.188 Sum_probs=187.1
Q ss_pred cCCCceEEEEECCCCCe-EEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEE-Eeec---------CC------
Q 003467 11 WKPSPVVALATSADDSQ-VAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLV-WCHA---------GK------ 73 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~-~s~~---------~~------ 73 (817)
.||..-+.|..||||+| ||+|.....|++||+..-.. .+.-|..+.|..+. ++.| .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee------eeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 57888899999999998 56777889999999986442 11111111111111 1111 00
Q ss_pred ------------------CCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccC
Q 003467 74 ------------------MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 135 (817)
Q Consensus 74 ------------------~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~ 135 (817)
|..+..-|++++....|.-.+++.|+-+..+....+.++++..++-.
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h--------------- 187 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH--------------- 187 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc---------------
Confidence 00011126666666779999999999999999888999999999876
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCcee---EeeccCCccce-----EE
Q 003467 136 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI---YHRSLPRVSGR-----VL 207 (817)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~-----v~ 207 (817)
.+|++|+.+|.|..||..+..... .......|.+. |+
T Consensus 188 -----------------------------------gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 188 -----------------------------------GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred -----------------------------------ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 499999999999999998554332 22233345444 99
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC---eEEEEcCCCcEEEEeCCCC
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~s~~~dg~i~iwd~~~~ 284 (817)
++.|+.+|-.+++|.++|.+.|||+++.+.+..-.. +.+.+|..+.|.+.+ .+++ .....++|||-.+|
T Consensus 233 al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh-------~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH-------GYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG 304 (703)
T ss_pred EEEecCCceeEEeeccCCcEEEEEcccCCceeeccc-------CCccceeeecccccCCCceEEe-cchHHhhhcccccC
Confidence 999999999999999999999999998887766542 566788899998764 3444 44567999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+....+.. ..++..+|+-|++-.+++|-.++.+..|-+...
T Consensus 305 k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 305 KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred Cceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 99888865 566999999999999999999988888876654
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-13 Score=145.78 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=120.6
Q ss_pred CEEEEEeCCCcEEEEEecC--C--CceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 171 RRVALACDDGCVRIYRITD--S--DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.++++|+.||+|++|+... + .......++....+++.++...+.++.+|.++.||.|++.++.-............
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~r 1141 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVR 1141 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeee
Confidence 4999999999999999972 1 22222233334567899999999999999999999999999875211111110001
Q ss_pred CCCCCCceeEEEe-EEecCC---eEEEEcCCCcEEEEeCCCCeEEEEee--cCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 247 GLGSGPELCIWSL-LSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 247 ~~~~~~~~~v~~v-~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
.......+.+.++ +|.... .++.+..-+.|..||.++...+.+++ ...+.|++++.+|.++++++|+..|.+.+
T Consensus 1142 i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~l 1221 (1431)
T KOG1240|consen 1142 IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVL 1221 (1431)
T ss_pred cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEE
Confidence 1111233334443 333222 57788888999999999766655543 34578999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeecc-ccCCCccceeEee
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRALTVA 362 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~ 362 (817)
||++-.. .+... .++..+++.+..+
T Consensus 1222 WDLRF~~-----------------~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1222 WDLRFRV-----------------PILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred EEeecCc-----------------eeecccCcccCCcceEEee
Confidence 9998765 22222 3445677777776
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.7e-12 Score=128.66 Aligned_cols=335 Identities=18% Similarity=0.232 Sum_probs=208.1
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-----eC-----CCcEEEEECCCCceEEEE
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-----SS-----DGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-----~~-----dg~i~vwd~~~g~~~~~~ 241 (817)
.+.+.+.+..++|++..++..+ ..... ..+.++.|+|-|.+|.+- .. .-.+.+|+++++.....+
T Consensus 47 ~lfA~~~~~~v~i~~~~~~~~~--lt~~~---~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~ 121 (566)
T KOG2315|consen 47 RLFAYSDNQVVKVFEIATLKVV--LCVEL---KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI 121 (566)
T ss_pred cEEEEEcCCeEEEEEccCCcEE--EEecc---ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe
Confidence 6777778889999999866522 12221 278999999999998862 11 245789999997766666
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC--CEEEE-----Ecc
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH--NRVFS-----TGS 314 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~~-----~~~ 314 (817)
.. ..+. -|+..|+.|..+++--..+.+.+|+....+.+ ..+-|...|..+++||.+ ..+++ .|.
T Consensus 122 q~-------k~Q~-~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 122 QK-------KMQN-GWVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred eh-------hhhc-CcccccccchhhhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 53 2222 28999999997777777788999999874432 233467889999999874 33443 456
Q ss_pred CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 315 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
-+.|++|......... .+.....-..+=-.+. |.
T Consensus 193 Pa~vri~~~~~~~~~~--------------~~a~ksFFkadkvqm~--------------------------------WN 226 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQ--------------PVANKSFFKADKVQMK--------------------------------WN 226 (566)
T ss_pred CcEEEEeccccccccc--------------hhhhccccccceeEEE--------------------------------ec
Confidence 6789999876322100 0111111111111111 22
Q ss_pred cCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 474 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 474 (817)
+.+..+|+..+.| ++... .+.-+.-.++-+.+..
T Consensus 227 ~~gt~LLvLastd-------VDktn-------------------------------~SYYGEq~Lyll~t~g-------- 260 (566)
T KOG2315|consen 227 KLGTALLVLASTD-------VDKTN-------------------------------ASYYGEQTLYLLATQG-------- 260 (566)
T ss_pred cCCceEEEEEEEe-------ecCCC-------------------------------ccccccceEEEEEecC--------
Confidence 2232333333211 11000 0000111222222211
Q ss_pred CCCCccceeeeeeecCCCCeEEEEecCCCcEEEE--Ec-CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC
Q 003467 475 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 551 (817)
Q Consensus 475 ~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 551 (817)
.-..+.....+.|.++.|+++|+-+++ |- -.++.+|++.. ..++++ + .++-+++-|+|.
T Consensus 261 -------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~df-----~--egpRN~~~fnp~ 322 (566)
T KOG2315|consen 261 -------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFDF-----P--EGPRNTAFFNPH 322 (566)
T ss_pred -------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEeC-----C--CCCccceEECCC
Confidence 112344445588999999999987766 43 37888998864 333222 2 235678899999
Q ss_pred CCEEEEEec---CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC------CCcEEEEEC
Q 003467 552 SSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIFNL 622 (817)
Q Consensus 552 ~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~------dg~i~vwd~ 622 (817)
|++++.++- .|.|.|||+.+.+++..+.. ..-+-..|+|||++++++.. |+.++||+.
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 999998875 57899999999888888874 34566799999999999875 567999998
Q ss_pred CCcceEEEEecCCCCCeEEEEecC
Q 003467 623 EIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 623 ~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
.+....... .. +....+.|-|
T Consensus 390 tG~~l~~~~--f~-sEL~qv~W~P 410 (566)
T KOG2315|consen 390 TGSLLHEKM--FK-SELLQVEWRP 410 (566)
T ss_pred cCceeehhh--hh-HhHhheeeee
Confidence 766543221 11 1467788887
No 226
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.59 E-value=2.6e-10 Score=129.43 Aligned_cols=522 Identities=15% Similarity=0.135 Sum_probs=292.4
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEE----ecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIW----LVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
.+.|.++.|-+|...|..+..+|.|.+. +..+.. ..+-|.-+..|.+++||||+.. |+.+..++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~------~E~VG~vd~GI~a~~WSPD~El------la~vT~~~ 142 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE------IEIVGSVDSGILAASWSPDEEL------LALVTGEG 142 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce------eEEEEEEcCcEEEEEECCCcCE------EEEEeCCC
Confidence 4689999999999999999999999999 554433 3333444678999999999988 88888888
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCC---ccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNS---SLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
+|.+-+ .+..++.... ..++.. ..+.++.+. ++ .++. |
T Consensus 143 ~l~~mt-~~fd~i~E~~----------l~~~~~~~~~~VsVGWGk----------Ke-------TQF~--G--------- 183 (928)
T PF04762_consen 143 NLLLMT-RDFDPISEVP----------LDSDDFGESKHVSVGWGK----------KE-------TQFH--G--------- 183 (928)
T ss_pred EEEEEe-ccceEEEEee----------cCccccCCCceeeeccCc----------cc-------CccC--c---------
Confidence 877654 3334443332 222220 000000000 00 0000 0
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC---C---CcEEEEECCCCceEE
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---D---GYIRSWDAKLGYEIY 239 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~---d---g~i~vwd~~~g~~~~ 239 (817)
+.++..+-.-.|-++- .. -...+. +...-..++|-.||.++|+.+. . ..||||+-+ |....
T Consensus 184 --s~gK~aa~~~~~p~~~--~~-------d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s 250 (928)
T PF04762_consen 184 --SAGKAAARQLRDPTVP--KV-------DEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS 250 (928)
T ss_pred --chhhhhhhhccCCCCC--cc-------ccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe
Confidence 0000000000000000 00 002223 4445668999999999998765 2 579999954 65443
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC----CcEEEEeCCCCeEEEEee----cCccCeeEEEEecCCCEEEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCGTLVSADST----GSVQFWDSRHGTLLQAHS----FHKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~----~h~~~v~~l~~s~~~~~l~~ 311 (817)
.-. ...+.-.+++|-|.|.++++... ..|.+|.-+ |-....|. .....|..++|++|+..|+.
T Consensus 251 tSE--------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 251 TSE--------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAV 321 (928)
T ss_pred ccc--------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEE
Confidence 332 34444567899999965554432 457777754 44443333 34568999999999999999
Q ss_pred EccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCC-CccceeEeecccCCCCCCCccccccccCCCCCccccc
Q 003467 312 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSY 390 (817)
Q Consensus 312 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (817)
.-.|. |.+|...+- .|-+...+.... ..+..+.|. |..
T Consensus 322 ~~~~~-vqLWt~~NY---------------HWYLKqei~~~~~~~~~~~~Wd---------pe~---------------- 360 (928)
T PF04762_consen 322 WLEDR-VQLWTRSNY---------------HWYLKQEIRFSSSESVNFVKWD---------PEK---------------- 360 (928)
T ss_pred EecCC-ceEEEeeCC---------------EEEEEEEEEccCCCCCCceEEC---------CCC----------------
Confidence 76664 999988763 465555555432 334456665 332
Q ss_pred cccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCccc
Q 003467 391 HKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES 470 (817)
Q Consensus 391 ~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~ 470 (817)
...|.....+|.+..++..-..... + ...-...+...+..+..+.+-.+....-
T Consensus 361 -------p~~L~v~t~~g~~~~~~~~~~v~~s-------~---------~~~~~D~g~vaVIDG~~lllTpf~~a~V--- 414 (928)
T PF04762_consen 361 -------PLRLHVLTSNGQYEIYDFAWDVSRS-------P---------GSSPNDNGTVAVIDGNKLLLTPFRRAVV--- 414 (928)
T ss_pred -------CCEEEEEecCCcEEEEEEEEEEEec-------C---------CCCccCceEEEEEeCCeEEEecccccCC---
Confidence 2356666666766655443211000 0 0000123445555555777666554432
Q ss_pred CCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCC---c--eEEEee-----ecCCcc
Q 003467 471 RSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQ---G--EWIINK-----RQLPRK 539 (817)
Q Consensus 471 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~---~--~~~~~~-----~~~~~~ 539 (817)
|.++......-...|.+++|++++..+|+ ..++.+.+|......... . ...+.. ......
T Consensus 415 ---------PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 415 ---------PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred ---------CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 22444445555588999999999875555 788999999976522110 0 000000 011112
Q ss_pred ccceeEEEEecCCCEEEEEecC---CcEEEEEccCCc---eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC
Q 003467 540 LQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSE---LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 613 (817)
Q Consensus 540 ~~~i~~~~fspd~~~l~~~~~d---g~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 613 (817)
...+..++|..+...++....+ ..+.++++...+ ....... -.+.+..+...++...++.-..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~q~~ 554 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTE-----------VDGVVLIISSSPDSGSLYIQTN 554 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEec-----------cCceEEEEeeCCCCcEEEEEEC
Confidence 3367888898887777766654 578888874332 2222222 3556666666666655777778
Q ss_pred CCcEEEEECCCcceEE-EEecCCCCCeEEEEecCCCCC--eEEEE-ecCCeEEEEEcCCCccccchhcccCccCcchhcC
Q 003467 614 FGDVYIFNLEIQRQHW-FISRLEGASVTAAGFPPQNNN--VLIIT-TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF 689 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~-~~~~~~~~~i~~l~~sp~d~~--~l~~~-~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~ 689 (817)
+|.+..++........ .++.. .+-..+.... +.. .++.| +..|.+++ .+..+
T Consensus 555 ~G~v~~~~~~~~~~~~~~fp~~--c~~~~~~~~~-~~~~~~~~~GLs~~~~Ly~---n~~~l------------------ 610 (928)
T PF04762_consen 555 DGKVFQLSSDGELSQIVKFPQP--CPWMEVCQIN-GSEDKRVLFGLSSNGRLYA---NSRLL------------------ 610 (928)
T ss_pred CCEEEEeecCCCccccccCCCC--CcEEEEEEEC-CccceeEEEEECCCCEEEE---CCEEE------------------
Confidence 9998877766554322 22221 1222333332 222 23343 44455543 33332
Q ss_pred CCceeEEEECCCCCCCEEEEEcCceEEEEEcC
Q 003467 690 PGEVIGLSFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 690 ~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
...+++.....+ -.++....+.+..+++.
T Consensus 611 a~~~tSF~v~~~---~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 611 ASNCTSFAVTDS---FLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ecCCceEEEEcC---EEEEEecCceEEEEECc
Confidence 135677777542 33444455557888888
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=138.81 Aligned_cols=231 Identities=17% Similarity=0.096 Sum_probs=152.2
Q ss_pred cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee---CCCeEEEEECCCCeEEEEEeecCceEE
Q 003467 36 SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS---IDGSVSEWDLYDLKQKIVLQSIDFSIW 112 (817)
Q Consensus 36 ~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~i~ 112 (817)
.|.+||...... ..+..+ ...+.+.+|||||+. |+..+ .+..|.+||+.+|+..... ...+.+.
T Consensus 180 ~l~~~d~dg~~~-----~~lt~~-~~~~~~p~wSPDG~~------la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~ 246 (429)
T PRK03629 180 ELRVSDYDGYNQ-----FVVHRS-PQPLMSPAWSPDGSK------LAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNG 246 (429)
T ss_pred eEEEEcCCCCCC-----EEeecC-CCceeeeEEcCCCCE------EEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcC
Confidence 699999876652 223333 468999999999987 77654 2457999999988644322 2333445
Q ss_pred EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE-EeCCC--cEEEEEecC
Q 003467 113 QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL-ACDDG--CVRIYRITD 189 (817)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~ 189 (817)
..+|+|||. .|+. .+.+| .|++||+.+
T Consensus 247 ~~~~SPDG~--------------------------------------------------~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 247 APAFSPDGS--------------------------------------------------KLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CeEECCCCC--------------------------------------------------EEEEEEcCCCCcEEEEEECCC
Confidence 689999995 4443 34444 588899875
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-Cc--EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-GY--IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g~--i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
+.. +.+..+...+...+|+|||+.|+..+.+ +. |.++|+.++.. ..+. ..........|+|||
T Consensus 277 g~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt--------~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 277 GQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT--------WEGSQNQDADVSSDGK 343 (429)
T ss_pred CCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee--------cCCCCccCEEECCCCC
Confidence 543 3444445577899999999999877764 44 55557766643 3443 122335568899999
Q ss_pred eEEEEcC-C--CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc---EEEEEeecccCCCCCCCCCccc
Q 003467 266 TLVSADS-T--GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ---VILYKASCESIGPNDGLSSSEV 339 (817)
Q Consensus 266 ~l~s~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~ 339 (817)
.++..+. + ..|.+||+.+++.. .+.. ........|+|||+.|+.++.++. +.++++....
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~------------ 409 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF------------ 409 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC------------
Confidence 4554433 2 35888999887643 3432 223456889999999999887765 5566664432
Q ss_pred cceEEEeeccccCCCccceeEee
Q 003467 340 IKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
...+..|...+...+|+
T Consensus 410 ------~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 410 ------KARLPATDGQVKFPAWS 426 (429)
T ss_pred ------eEECccCCCCcCCcccC
Confidence 34556677777777775
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.1e-11 Score=125.83 Aligned_cols=497 Identities=14% Similarity=0.178 Sum_probs=307.1
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
-+++|.+.|.-+.|+.+.+.|-+...+|-|.||=+..|. | ++-.+....++-|.+++|..||.. ++..-.|
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs--W-~EEMiNnRnKSvV~SmsWn~dG~k------IcIvYeD 136 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS--W-CEEMINNRNKSVVVSMSWNLDGTK------ICIVYED 136 (1189)
T ss_pred hhccCcceEEEEEeccccccccccCCCceEEEEeeeccc--H-HHHHhhCcCccEEEEEEEcCCCcE------EEEEEcc
Confidence 468999999999999999999999999999999998876 3 344444455788999999999987 9999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
|.|.|=.++..+ +..-+-.+.....+.|++|..
T Consensus 137 GavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~---------------------------------------------- 169 (1189)
T KOG2041|consen 137 GAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLE---------------------------------------------- 169 (1189)
T ss_pred CCEEEEeeccce-ecchhcchheccceeecccHH----------------------------------------------
Confidence 998877665432 221111122334688999883
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCcee--------EeeccCCccceEEEEEEc--------cCCCEEEEeeCCCcEEEEE
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELI--------YHRSLPRVSGRVLSVTWS--------ADGNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~h~~~v~~v~~s--------~dg~~l~s~~~dg~i~vwd 231 (817)
.++.+-..|.+.+||.+..-... ....+.....+|-.+.|. ||-..|+.+-.+|.+.+-.
T Consensus 170 ----~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 170 ----QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ----HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 45556667888999876321110 001112222346666664 4778899999999888876
Q ss_pred CCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC---------CcEEEEeCCCCeEEEEeecCccCeeEEE
Q 003467 232 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------GSVQFWDSRHGTLLQAHSFHKGDVNALA 301 (817)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~ 301 (817)
-.+......+. ..-.+....|+++| .|+.++.+ +.|.+|..- |..+.+++.....|+.++
T Consensus 246 ~eND~~Pvv~d---------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~ls 315 (1189)
T KOG2041|consen 246 SENDPEPVVVD---------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLS 315 (1189)
T ss_pred hcCCCCCeEEe---------cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeE
Confidence 55554444443 33667888999999 45555433 246677654 888899998899999999
Q ss_pred EecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccC
Q 003467 302 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 381 (817)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (817)
|-..|-.++.+ .|+.|.+=+++.. -+|-.+.. .+.
T Consensus 316 WEg~gLriA~A-vdsfiyfanIRP~--------------ykWgy~e~---------TvV--------------------- 350 (1189)
T KOG2041|consen 316 WEGTGLRIAIA-VDSFIYFANIRPE--------------YKWGYIEE---------TVV--------------------- 350 (1189)
T ss_pred EcCCceEEEEE-ecceEEEEeeccc--------------ceEEEeee---------EEE---------------------
Confidence 98888777766 6788877666543 23322211 000
Q ss_pred CCCCccccccccccCCCcEEEEec--CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEE
Q 003467 382 REKPIDFSYHKWAHLGVPMLISAG--DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDI 459 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i 459 (817)
++.++- ....|.+||..+..++... .....++++..+..+++.....-.+
T Consensus 351 ------------------y~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 351 ------------------YVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred ------------------EEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccCCC
Confidence 111110 1124678888765543211 0111234444444444432211111
Q ss_pred EEecccCCcccCCCCCCCC-ccceeeeeeecCCCC---eEEEEecCCCcEEEEEcCCceEEEEeecCCCCC---------
Q 003467 460 LSVRLENNVESRSSSGGHA-STSLLVQVKSKASRK---IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ--------- 526 (817)
Q Consensus 460 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~---i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~--------- 526 (817)
-...+-+.. +.. -..++..+-..-+.. |.-.-..-++..++.++...+.+|.....+...
T Consensus 403 ~e~s~le~~-------~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 403 PEYSTLENR-------SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred cchhhhhcc-------cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc
Confidence 111000000 000 000011111111122 222223345677777788888888775421110
Q ss_pred ---------------ceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 527 ---------------GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 527 ---------------~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
..+.....++.+...+|.+++.| .++|.++-..|.|+-|.+.+.-+.....
T Consensus 476 egr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~------------ 541 (1189)
T KOG2041|consen 476 EGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP------------ 541 (1189)
T ss_pred cccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc------------
Confidence 11111123344445578888775 6788899999999999999887776666
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECC---CcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE---IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
-+..|.+++..-+...||..+.-|.+.+.|++ ++.....+.+.....|+++.|.. |+..|+.--.-..++||+=..
T Consensus 542 ~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~-dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 542 VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQ-DNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhcc-CCchHHhhhhhceEEEecCcC
Confidence 47789999999999999999999999999986 34444434455557899999998 555555544555677876544
Q ss_pred C
Q 003467 669 K 669 (817)
Q Consensus 669 ~ 669 (817)
-
T Consensus 621 p 621 (1189)
T KOG2041|consen 621 P 621 (1189)
T ss_pred c
Confidence 3
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=3.5e-11 Score=128.33 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=155.3
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
+.+|..-.+.-+.+++|.+..++.+-|||...+. ....+.......-.+++.--++. .+-++++++.-+.|.+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i~~~er~~l~~~~~~g~s~---~~~~i~~gsv~~~iiv 159 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS----VLSKIQSDERCTLYSSLIIGDSA---EELYIASGSVFGEIIV 159 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCc----eehhcCCCceEEEEeEEEEeccC---cEEEEEeccccccEEE
Confidence 4556666666677889999999999999998765 23344433222222222222211 1245899999999999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
|++..-+.-..+.+|.+.|..+.++.|| .+
T Consensus 160 W~~~~dn~p~~l~GHeG~iF~i~~s~dg--------------------------------------------------~~ 189 (967)
T KOG0974|consen 160 WKPHEDNKPIRLKGHEGSIFSIVTSLDG--------------------------------------------------RY 189 (967)
T ss_pred EeccccCCcceecccCCceEEEEEccCC--------------------------------------------------cE
Confidence 9987433333688999999999999999 59
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCC
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 252 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~ 252 (817)
+++.++|.++|+|++.+.+.+. ...-+|+++|..++|.|+ .++|++.|.+.++|+. .+..+..+.. ..
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~-------h~ 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDE-------HS 257 (967)
T ss_pred EEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhh-------hh
Confidence 9999999999999999877663 467799999999999998 9999999999999976 4666666653 24
Q ss_pred ceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC
Q 003467 253 ELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 253 ~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~ 283 (817)
...+|.++..++. .+++++.|+.+++||+..
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 4679999999888 789999999999999864
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=133.15 Aligned_cols=223 Identities=16% Similarity=0.133 Sum_probs=154.3
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcE--EEEEEcCCCCCcEEEEEE-----eecCCCCCCCceEEEeeCC
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWH--CQLTVHGDPKSRISSLVW-----CHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~--~~~~~~g~~~~~V~~l~~-----s~~~~~~~~~~~l~s~~~d 87 (817)
.++...++-.|.+|...-. ..+.+|+...+..... ....+.+. .-+|=+| .|.+-- |+.+-..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt---~P~cHdfn~~~a~~~g~d------llIGf~t 194 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT---SPTCHDFNSFTATPKGLD------LLIGFTT 194 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC---CCceecccccccCCCCcc------eEEeecc
Confidence 4556666777888887643 4589999885432111 11222322 2334444 223332 7777778
Q ss_pred CeEEEEECCCCeEEEEE----eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 88 GSVSEWDLYDLKQKIVL----QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~----~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
|.|.+.|....+..+.+ ......|+|+.|-|.++.
T Consensus 195 Gqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----------------------------------------- 233 (636)
T KOG2394|consen 195 GQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----------------------------------------- 233 (636)
T ss_pred CceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc-----------------------------------------
Confidence 88988887652221111 123478999999998764
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCC--------------CceeEe-----------eccCCccceEEEEEEccCCCEE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDS--------------DELIYH-----------RSLPRVSGRVLSVTWSADGNML 218 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~-----------~~~~~h~~~v~~v~~s~dg~~l 218 (817)
.++++-.+|.+++||.... ..+... ..+.--++.|...+|+|||++|
T Consensus 234 --------~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 234 --------LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred --------eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceE
Confidence 5555566666666654310 000000 1111124578899999999999
Q ss_pred EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCe
Q 003467 219 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 297 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v 297 (817)
|+.+.||.+||+|..+.+.+..+. .--+...|++|+||| +|++|++|-.|.||.+..++.+..-++|...|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mk--------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMK--------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHH--------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999998887776665 456778999999999 79999999999999999999999999999999
Q ss_pred eEEEEec
Q 003467 298 NALAAAP 304 (817)
Q Consensus 298 ~~l~~s~ 304 (817)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999987
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2e-11 Score=121.24 Aligned_cols=351 Identities=11% Similarity=0.146 Sum_probs=211.4
Q ss_pred cEEEEEecCCCceeEeeccCC--ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEE
Q 003467 181 CVRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 258 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~ 258 (817)
.+.+|......... ..+.. ....+...+++++|++++.+.. ..++|++..++..+.+.. .. .+.+
T Consensus 12 ~~~l~~~~~~~~~~--~~f~~~~~~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~---------~~-~~~~ 78 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAV--TVFEQNKTSRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE---------LK-KTYD 78 (566)
T ss_pred eeEEeccCCccccc--cccccCCCCCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec---------cc-eeee
Confidence 46778765322221 11211 1334678889999988877654 599999998887554443 22 7899
Q ss_pred eEEecCCeEEEE------cC-----CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 259 LLSLRCGTLVSA------DS-----TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 259 v~~~~~~~l~s~------~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+.|+|-|..+.. .. .-.+++|+++++.....+......-.++.|++|..+ ++--..+.+.+|+..+.+
T Consensus 79 L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 79 LLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFK 157 (566)
T ss_pred eeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCcc
Confidence 999999844332 11 234789999997666555544333368999998763 333346689999988744
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE-----
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI----- 402 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----- 402 (817)
......|...|..+.++ |... ...++
T Consensus 158 ------------------~~~~kl~~~~i~~f~lS---------pgp~----------------------~~~vAvyvPe 188 (566)
T KOG2315|consen 158 ------------------TIQHKLSVSGITMLSLS---------PGPE----------------------PPFVAVYVPE 188 (566)
T ss_pred ------------------ceeeeeeccceeeEEec---------CCCC----------------------CceEEEEccC
Confidence 23345567778888886 3322 01232
Q ss_pred EecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccce
Q 003467 403 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL 482 (817)
Q Consensus 403 s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~ 482 (817)
.+|.-+.+++|........... ..-.| .-.+...-.|+-.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~--------------a~ksF-------Fkadkvqm~WN~~------------------- 228 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPV--------------ANKSF-------FKADKVQMKWNKL------------------- 228 (566)
T ss_pred CCCCCcEEEEeccccccccchh--------------hhccc-------cccceeEEEeccC-------------------
Confidence 2455568888876532211110 00000 0000111112100
Q ss_pred eeeeeecCCCCeEEEE---ecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE-
Q 003467 483 LVQVKSKASRKIICST---ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA- 558 (817)
Q Consensus 483 ~~~~~~~~~~~i~~~~---~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~- 558 (817)
...+..++ +...++ .+-...+++++.++. .... ..+. ..++|.++.|+|+|+.++++
T Consensus 229 --------gt~LLvLastdVDktn~--SYYGEq~Lyll~t~g---~s~~-----V~L~-k~GPVhdv~W~~s~~EF~Vvy 289 (566)
T KOG2315|consen 229 --------GTALLVLASTDVDKTNA--SYYGEQTLYLLATQG---ESVS-----VPLL-KEGPVHDVTWSPSGREFAVVY 289 (566)
T ss_pred --------CceEEEEEEEeecCCCc--cccccceEEEEEecC---ceEE-----EecC-CCCCceEEEECCCCCEEEEEE
Confidence 00011100 000000 000112333333331 1222 1222 24589999999999877654
Q ss_pred -ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC---CcEEEEECCCcceEEEEecC
Q 003467 559 -GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 559 -~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d---g~i~vwd~~~~~~~~~~~~~ 634 (817)
-.-..+.|||+. +.++..|. .++-+++-|+|.|++|+.++.+ |.|.|||+.+.++...+..
T Consensus 290 GfMPAkvtifnlr-~~~v~df~-------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a- 354 (566)
T KOG2315|consen 290 GFMPAKVTIFNLR-GKPVFDFP-------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA- 354 (566)
T ss_pred ecccceEEEEcCC-CCEeEeCC-------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-
Confidence 345689999976 77777776 5677899999999999988754 7899999999776555433
Q ss_pred CCCCeEEEEecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 003467 635 EGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 671 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~~~l~~~~~------d~~i~vwd~~~~~~ 671 (817)
..-+-+.|+| ||+++++++. |+.++||+..+..+
T Consensus 355 --~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 355 --ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred --CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 3456789999 9999999864 78999999988765
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.6e-14 Score=137.61 Aligned_cols=230 Identities=13% Similarity=0.177 Sum_probs=189.6
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
-..+.|+.+|++|+.|+..|.|..+|+.++. +...+.- ...|.++.|-.+.++ +|++ ....+.|||
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v--~Etv~Dv~~LHneq~------~AVA-QK~y~yvYD- 197 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINV--METVRDVTFLHNEQF------FAVA-QKKYVYVYD- 197 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccce----eeeeeeh--hhhhhhhhhhcchHH------HHhh-hhceEEEec-
Confidence 3567889999999999999999999999987 3334433 468999999999886 5555 567899999
Q ss_pred CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 96 YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
..|..+..+..| .+|..+.|-|.. =+|++
T Consensus 198 ~~GtElHClk~~-~~v~rLeFLPyH--------------------------------------------------fLL~~ 226 (545)
T KOG1272|consen 198 NNGTELHCLKRH-IRVARLEFLPYH--------------------------------------------------FLLVA 226 (545)
T ss_pred CCCcEEeehhhc-Cchhhhcccchh--------------------------------------------------heeee
Confidence 556667777644 678889999876 28889
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCcee
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 255 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 255 (817)
++..|.++--|+.+|+.+ ..+..-.+++..++-+|-...+-+|...|+|.+|.....+.+.++. .|.++
T Consensus 227 ~~~~G~L~Y~DVS~GklV---a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL--------cH~g~ 295 (545)
T KOG1272|consen 227 ASEAGFLKYQDVSTGKLV---ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL--------CHRGP 295 (545)
T ss_pred cccCCceEEEeechhhhh---HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH--------hcCCC
Confidence 999999999999988776 6666677889999999999999999999999999999888888887 69999
Q ss_pred EEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 256 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 256 v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
|.++++.++| ++++++.|..++|||++....+.++.. ......+++|..| +++++....|.+|.-.
T Consensus 296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDA 362 (545)
T ss_pred cceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhh
Confidence 9999999999 799999999999999998877766655 4567788998766 4445555689999643
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=5.3e-11 Score=122.29 Aligned_cols=300 Identities=17% Similarity=0.192 Sum_probs=186.5
Q ss_pred CcEEEEeC--CCCeEE--EEeecCccCeeEEEEecCCCEEEEEcc----CCcEEEEEeecccCCCCCCCCCccccceEEE
Q 003467 274 GSVQFWDS--RHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 274 g~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
+.|..|++ .++++. .... .......++++|++++|++... ++.|..|++.... ..+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-------------g~L~~ 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-------------GTLTL 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-------------TEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-------------ceeEE
Confidence 57888776 555543 2222 3456677999999999999866 5789999988752 12223
Q ss_pred eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe-cCCCeEEEEeCCcccccCCc
Q 003467 346 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAYCANEFTKFSPH 424 (817)
Q Consensus 346 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~~~~~~~~~~~~~~ 424 (817)
+............+++. |+++ +|+++ ..+|.+.++++.....+...
T Consensus 79 ~~~~~~~g~~p~~i~~~---------~~g~------------------------~l~vany~~g~v~v~~l~~~g~l~~~ 125 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVD---------PDGR------------------------FLYVANYGGGSVSVFPLDDDGSLGEV 125 (345)
T ss_dssp EEEEEESSSCEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEEEECTTSEEEEE
T ss_pred eeeeccCCCCcEEEEEe---------cCCC------------------------EEEEEEccCCeEEEEEccCCccccee
Confidence 33333333344456665 6665 55555 46899999999864322221
Q ss_pred c-------cCCCCCCCceeeecceeecCCeEEEEEeC---CeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCe
Q 003467 425 E-------ICPAPQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 494 (817)
Q Consensus 425 ~-------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i 494 (817)
. ..+.+.+.....+..+.++|++++++..+ +.|.+++++..... ......+..+.....
T Consensus 126 ~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----------l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 126 VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-----------LTPVDSIKVPPGSGP 194 (345)
T ss_dssp EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-----------EEEEEEEECSTTSSE
T ss_pred eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-----------EEEeeccccccCCCC
Confidence 1 11222333445566789999988776543 38888888654421 223445566666779
Q ss_pred EEEEecCCCcEEEEE--cCCceEEEEeecCCCCCceEEEeee-cCCcc---ccceeEEEEecCCCEEEEEec-CCcEEEE
Q 003467 495 ICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKR-QLPRK---LQFAHSMIFSYDSSQLIIAGH-DRRIYVV 567 (817)
Q Consensus 495 ~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~~---~~~i~~~~fspd~~~l~~~~~-dg~i~v~ 567 (817)
+.++|+|+|+++.+. .++.|.+|++......... +... .++.. ......++++|||++|+++.. .+.|.+|
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 999999999987774 4588999999842221111 2221 22111 125789999999999988765 6689999
Q ss_pred Ecc--CCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEEC--CCcceEEEEecCCCCCeE
Q 003467 568 DVS--SSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHWFISRLEGASVT 640 (817)
Q Consensus 568 d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~i~ 640 (817)
+++ +++ .+..+.. .......++++|||++|+++. .++.|.+|++ +++.+...........+.
T Consensus 273 ~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPT-----------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EECTTTTTEEEEEEEEE-----------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EEecCCCceEEEEEEeC-----------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 993 343 3333332 345589999999999999887 5568999977 466655443323334677
Q ss_pred EEEe
Q 003467 641 AAGF 644 (817)
Q Consensus 641 ~l~~ 644 (817)
|+.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7776
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=139.02 Aligned_cols=221 Identities=18% Similarity=0.261 Sum_probs=185.4
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
|++|+.|+..|.|..+|..+.... ..+ .-...|..+.|-.+..++|++- ...+.||| ..|..++.+.
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~---~Ei-~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk------- 207 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLH---FEI-NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK------- 207 (545)
T ss_pred ccEEEecCCccceeeeecccceee---eee-ehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh-------
Confidence 379999999999999999866543 222 1234688999998888887765 45999999 5688888886
Q ss_pred CCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 250 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
....|..+.|.|.. .|++++..|.++.-|+.+|+++..+....+.+..++-+|-+..+-+|...|+|.+|......
T Consensus 208 --~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske- 284 (545)
T KOG1272|consen 208 --RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE- 284 (545)
T ss_pred --hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc-
Confidence 56788999999998 68889999999999999999999999888999999999999889999999999999988877
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 408 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 408 (817)
++..+..|.++|+++++. ++|. ++++.|.|.
T Consensus 285 ----------------PLvKiLcH~g~V~siAv~---------~~G~------------------------YMaTtG~Dr 315 (545)
T KOG1272|consen 285 ----------------PLVKILCHRGPVSSIAVD---------RGGR------------------------YMATTGLDR 315 (545)
T ss_pred ----------------hHHHHHhcCCCcceEEEC---------CCCc------------------------EEeeccccc
Confidence 678889999999999997 7775 999999999
Q ss_pred eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEec
Q 003467 409 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR 463 (817)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~ 463 (817)
.+++||++.+..+..... ...+..+++|..|.+.+.....+.||.-.
T Consensus 316 ~~kIWDlR~~~ql~t~~t--------p~~a~~ls~SqkglLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRT--------PHPASNLSLSQKGLLALSYGDHVQIWKDA 362 (545)
T ss_pred ceeEeeeccccccceeec--------CCCccccccccccceeeecCCeeeeehhh
Confidence 999999999875443322 12455788999999988888899999743
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.9e-13 Score=142.93 Aligned_cols=221 Identities=18% Similarity=0.112 Sum_probs=147.8
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEec---CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAARE---DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
.+.+..+...+.+.+|||||++||..+. +..|.+||+.+++. ..+... .+...+++|+|||+. |+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-----~~l~~~-~g~~~~~~~SpDG~~------l~ 263 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-----ELVASF-RGINGAPSFSPDGRR------LA 263 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----EEeccC-CCCccCceECCCCCE------EE
Confidence 3445566778999999999999998763 34699999988762 223322 334568899999986 54
Q ss_pred -EeeCCC--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 83 -SSSIDG--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 83 -s~~~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
+.+.++ .|.+||+.+++.. .+..+.......+|+||+.
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~-------------------------------------- 304 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGK-------------------------------------- 304 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCC--------------------------------------
Confidence 445554 6999999988754 4555555566789999984
Q ss_pred ccccccccccCCEEEEEe-CCCc--EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC---cEEEEECC
Q 003467 160 DELHEQSVVEDRRVALAC-DDGC--VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---YIRSWDAK 233 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~ 233 (817)
.++..+ .+|. |+++++.++.. +.+..+......++|+|||++|+..+.++ .|.+||+.
T Consensus 305 ------------~l~f~sd~~g~~~iy~~dl~~g~~----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 305 ------------SIYFTSDRGGRPQIYRVAASGGSA----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred ------------EEEEEECCCCCceEEEEECCCCCe----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 455444 3444 56666654432 22222233455789999999998876443 69999998
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC---CCcEEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS---TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
+++.. .+. +........|+||| .++..+. .+.|.+++.. +.....+..+.+.+...+|+|
T Consensus 369 ~g~~~-~Lt---------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 369 TGSVR-TLT---------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCeE-ECC---------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 87654 333 11133457899999 3444433 2357788885 556666766667788888876
No 236
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.54 E-value=1.3e-10 Score=112.77 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=126.3
Q ss_pred CCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCC-cEEEEEccCCceeeeecc
Q 003467 502 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSELLHTFTP 580 (817)
Q Consensus 502 ~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~ 580 (817)
+|.+++.-+.|+..+.+... +-. .++ ++...|.-..+.-+++-++.|..|| .+-|+|..+++..+...
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~---~~~------iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~- 399 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWD---GYS------IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK- 399 (668)
T ss_pred CCcEEEEEecCcEEEECCCC---Cee------EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence 67788887788877765432 211 112 2333577778888888999999999 89999998877655444
Q ss_pred CcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC-
Q 003467 581 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN- 659 (817)
Q Consensus 581 ~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~- 659 (817)
.-+.|-++..|+||++++++.....|.++|++++.....- ....+-|+.++||| +++++|.+-.+|
T Consensus 400 -----------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~-nsr~iAYafP~gy 466 (668)
T COG4946 400 -----------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHP-NSRWIAYAFPEGY 466 (668)
T ss_pred -----------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcC-CceeEEEecCcce
Confidence 4788999999999999999999999999999999875433 33346899999999 999999998877
Q ss_pred ---eEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCC
Q 003467 660 ---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS 703 (817)
Q Consensus 660 ---~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~ 703 (817)
.|++||+++++. -......+--.+.+|.||++
T Consensus 467 ~tq~Iklydm~~~Ki------------y~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 467 YTQSIKLYDMDGGKI------------YDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred eeeeEEEEecCCCeE------------EEecCCcccccCcccCCCCc
Confidence 799999999874 12233334455678888754
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=2.7e-12 Score=119.15 Aligned_cols=316 Identities=12% Similarity=0.149 Sum_probs=188.1
Q ss_pred ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCc
Q 003467 294 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 373 (817)
Q Consensus 294 ~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 373 (817)
..-|.++.|...|.+|++|..+|.|.+|....... ..+......+.|...---+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------~ey~~~t~fqshepEFDYLk------------- 79 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------GEYNFQTEFQSHEPEFDYLK------------- 79 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc------------cceeeeeeeeccCcccchhh-------------
Confidence 35688999999999999999999999997654331 01112333344432211110
Q ss_pred cccccccCCCCCccccccccccC-CCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 374 DKVKRSRGREKPIDFSYHKWAHL-GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
..+..-..+-.+|..+ +...++..+.|.+|++|.+......... ...+...+.+.+.++.. .+.
T Consensus 80 -------SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~--~~~~~~~~~~~~~~lr~------p~~ 144 (433)
T KOG1354|consen 80 -------SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEG--YNLPEEGPPGTITSLRL------PVE 144 (433)
T ss_pred -------hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccc--ccccccCCCCccceeec------eee
Confidence 0000111122233322 3457778889999999998764432210 01111111111111110 000
Q ss_pred eCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEe
Q 003467 453 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 453 ~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
...... ............|...|.+++++.|++.+..+++-.|.+|+++..+..-.+.+++
T Consensus 145 ~~~~~~-------------------vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIK 205 (433)
T KOG1354|consen 145 GRHDLE-------------------VEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIK 205 (433)
T ss_pred ccccce-------------------eeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEcc
Confidence 000000 0001122233456678999999999999999999999999999866666666665
Q ss_pred eecCCccccceeEEEEec-CCCEEEEEecCCcEEEEEccCCcee----eeeccCcc-cccccCCCCCCceeEEEEccCCC
Q 003467 533 KRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELL----HTFTPCRE-EHDREIQPSEPPITKMFTSSDGQ 606 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~ 606 (817)
...+.....-|++..|+| ....++..+..|+|++-|+....+- ..|..... ....-+..--..|..+.||++|+
T Consensus 206 P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr 285 (433)
T KOG1354|consen 206 PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR 285 (433)
T ss_pred ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc
Confidence 555555555789999999 4677888888999999999643221 11221100 00001112345788999999999
Q ss_pred EEEEEeCCCcEEEEECC-CcceEEEEecCC-----------CCCe---EEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 607 WLAAVNCFGDVYIFNLE-IQRQHWFISRLE-----------GASV---TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 607 ~la~~~~dg~i~vwd~~-~~~~~~~~~~~~-----------~~~i---~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
|+++-+.- +|+|||+. ..+...+.+.+. ...| ..++|+- ++.++++|+..+.+++|++..|.
T Consensus 286 yilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 286 YILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 99987654 69999994 333333332211 1122 3578998 88899999999999999976653
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.1e-12 Score=121.18 Aligned_cols=153 Identities=16% Similarity=0.248 Sum_probs=112.9
Q ss_pred EEEEecCCCcEEEEEcC-----------CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe--cC
Q 003467 495 ICSTISNSGMLFAYSDH-----------VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--HD 561 (817)
Q Consensus 495 ~~~~~s~~g~~la~~~~-----------~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~--~d 561 (817)
..+.|+++|..|++-.+ +...+|.+...+..... ..+.. ..+|.+++|+|+|+.+|+.. .+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-----i~l~~-~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-----IELKK-EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-----eeccC-CCceEEEEECcCCCEEEEEEccCC
Confidence 35678999988776211 34667777553222222 22322 23599999999999986653 46
Q ss_pred CcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC---CCcEEEEECCCcceEEEEecCCCCC
Q 003467 562 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGAS 638 (817)
Q Consensus 562 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~ 638 (817)
+.|.+||++ ++.+.++. ...++.+.|||+|++||+++. .|.|.+||+++.+..... +...
T Consensus 83 ~~v~lyd~~-~~~i~~~~-------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~---~~~~ 145 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG-------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF---EHSD 145 (194)
T ss_pred cccEEEcCc-ccEeEeec-------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc---ccCc
Confidence 799999986 66666665 356788999999999999874 467999999987765444 2346
Q ss_pred eEEEEecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 003467 639 VTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL 671 (817)
Q Consensus 639 i~~l~~sp~d~~~l~~~~~------d~~i~vwd~~~~~~ 671 (817)
++.++|+| ||++|++++. |+.++||+..+..+
T Consensus 146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 89999999 9999999874 78999999987764
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.5e-12 Score=136.83 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=143.0
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---CCeEEEEECCCCeEEEEEeecCceE
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSI 111 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~i 111 (817)
..|.+||..... .+.+..+ ...+.+++|+|||+. |+..+. +..|.+||+.+++... +....+..
T Consensus 184 ~~l~i~D~~g~~-----~~~lt~~-~~~v~~p~wSpDg~~------la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~ 250 (433)
T PRK04922 184 YALQVADSDGYN-----PQTILRS-AEPILSPAWSPDGKK------LAYVSFERGRSAIYVQDLATGQREL-VASFRGIN 250 (433)
T ss_pred EEEEEECCCCCC-----ceEeecC-CCccccccCCCCCCE------EEEEecCCCCcEEEEEECCCCCEEE-eccCCCCc
Confidence 369999987554 2334444 467999999999987 887764 3479999999887543 33344555
Q ss_pred EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC--cEEEEEecC
Q 003467 112 WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG--CVRIYRITD 189 (817)
Q Consensus 112 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 189 (817)
.+.+|+|||.. .+++.+.+| .|++||+.+
T Consensus 251 ~~~~~SpDG~~-------------------------------------------------l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 251 GAPSFSPDGRR-------------------------------------------------LALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cCceECCCCCE-------------------------------------------------EEEEEeCCCCceEEEEECCC
Confidence 67899999953 223444444 699999976
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCc--EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGY--IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~--i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
+. . +.+..+.......+|+|||++|+..+. +|. |.++|+.+++. ..+.. .......++|+|||
T Consensus 282 g~-~---~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~--------~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 282 RQ-L---TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTF--------QGNYNARASVSPDGK 348 (433)
T ss_pred CC-e---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeec--------CCCCccCEEECCCCC
Confidence 54 3 445556556678999999999987764 444 77777766653 33431 22233468999999
Q ss_pred eEEEEcCC-C--cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC---CcEEEEEeec
Q 003467 266 TLVSADST-G--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---GQVILYKASC 325 (817)
Q Consensus 266 ~l~s~~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d---g~i~iw~~~~ 325 (817)
.++..+.+ + .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++..
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 45544333 2 5999999887754 443 22345567999999988776553 3566666644
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=2.1e-13 Score=133.81 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=125.0
Q ss_pred CCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC----
Q 003467 22 SADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD---- 97 (817)
Q Consensus 22 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~---- 97 (817)
.|++--|.+|-.-|.|.+.|....+. -.+...-..-.+.+|+|+.|-|.++. .++.+-.+|.+.++|.+-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~-----~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEERLINKSSVTCIKWVPGSDS-----LFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-HHhhhhcccccccceEEEEEEeCCCc-----eEEEEEecCceEEeeccccccC
Confidence 45677788888889999998765321 00011111112579999999998775 244455688899997531
Q ss_pred ----------CeE--------------EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 98 ----------LKQ--------------KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 98 ----------~~~--------------~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
+.. +....--.+.|...+|+|||
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG--------------------------------- 302 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG--------------------------------- 302 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC---------------------------------
Confidence 111 11111122345555666655
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
++||+.+.||.+||||..+.+.+ ..++.--+..+||+|||||++|++|++|--|.||.+.
T Consensus 303 -----------------~~LA~VSqDGfLRvF~fdt~eLl---g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 303 -----------------KYLATVSQDGFLRIFDFDTQELL---GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred -----------------ceEEEEecCceEEEeeccHHHHH---HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 69999999999999999855444 4444556789999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
..+.+.+-. +|..+|..|+|.
T Consensus 363 erRVVARGq--------GHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRVVARGQ--------GHKSWVSVVAFD 383 (636)
T ss_pred cceEEEecc--------ccccceeeEeec
Confidence 998888876 899999999997
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.3e-12 Score=136.13 Aligned_cols=216 Identities=12% Similarity=0.004 Sum_probs=146.9
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---CCeEEEEECCCCeEEEEEeecCceE
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSI 111 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~i 111 (817)
..|.+||..... ...+..+ ...+.+.+|+|||+. |+..+. +..|.+||+.+|+.. .+..+.+.+
T Consensus 182 ~~l~~~d~dg~~-----~~~lt~~-~~~v~~p~wSpDG~~------lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~ 248 (435)
T PRK05137 182 KRLAIMDQDGAN-----VRYLTDG-SSLVLTPRFSPNRQE------ITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMT 248 (435)
T ss_pred eEEEEECCCCCC-----cEEEecC-CCCeEeeEECCCCCE------EEEEEecCCCCEEEEEECCCCcEE-EeecCCCcc
Confidence 378889986654 2334444 568999999999987 777653 468999999988754 455566778
Q ss_pred EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc--EEEEEecC
Q 003467 112 WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC--VRIYRITD 189 (817)
Q Consensus 112 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~ 189 (817)
...+|+|||.. .+++.+.++. |++||+.+
T Consensus 249 ~~~~~SPDG~~-------------------------------------------------la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 249 FAPRFSPDGRK-------------------------------------------------VVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred cCcEECCCCCE-------------------------------------------------EEEEEecCCCceEEEEECCC
Confidence 88999999942 2334555554 77778765
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CC--cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg--~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
+. + +.+..+.+.....+|+|||+.|+..+. +| .|.+||+.+++ ...+. .....+....|+|||
T Consensus 280 ~~-~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt--------~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 280 GT-T---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRIS--------FGGGRYSTPVWSPRGD 346 (435)
T ss_pred Cc-e---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEee--------cCCCcccCeEECCCCC
Confidence 43 3 456666677788999999999988764 33 68888986554 44554 233445667899999
Q ss_pred eEEEEcCC---CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC------CcEEEEEeeccc
Q 003467 266 TLVSADST---GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD------GQVILYKASCES 327 (817)
Q Consensus 266 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d------g~i~iw~~~~~~ 327 (817)
.|+....+ ..|.+||...+. ...+.. ...+..+.|+|||+.|+..+.+ ..+.++++.++.
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 45544332 358888986544 333432 3357789999999988765442 246666665543
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.2e-13 Score=140.30 Aligned_cols=222 Identities=20% Similarity=0.159 Sum_probs=145.9
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF- 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~- 82 (817)
+.+..++..+.+.+|||||++||..+.+ ..|.+||+.+++. ..+... .+.+.+.+|+|||+. |+
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-----~~l~~~-~g~~~~~~~SPDG~~------la~ 256 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-----RVVANF-KGSNSAPAWSPDGRT------LAV 256 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-----EEeecC-CCCccceEECCCCCE------EEE
Confidence 4455677889999999999999987642 4599999998862 223222 345678999999986 65
Q ss_pred EeeCCCeEEEEE--CCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 83 SSSIDGSVSEWD--LYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 83 s~~~d~~i~vwd--~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+.+.++...+|. +.++. ...+..+.+......|+|||.
T Consensus 257 ~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~--------------------------------------- 296 (427)
T PRK02889 257 ALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGR--------------------------------------- 296 (427)
T ss_pred EEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCC---------------------------------------
Confidence 566777766655 55544 455555555667788999994
Q ss_pred cccccccccCCEEEEEe-CCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC---cEEEEECCCC
Q 003467 161 ELHEQSVVEDRRVALAC-DDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---YIRSWDAKLG 235 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~~g 235 (817)
.|+..+ .+|...||.+.. +... +.+..+.......+|+|||++|+..+.++ .|.+||+.++
T Consensus 297 -----------~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 297 -----------SIYFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred -----------EEEEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 454444 356667776642 2222 11111223344678999999999877654 6999999887
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-CCCc--EEEEeCCCCeEEEEeecCccCeeEEEEecC
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
+.. .+.. ........|+||| .|+.++ ..|. +.+.+. +|+....+..+.+.+...+|+|-
T Consensus 363 ~~~-~lt~---------~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 363 QVT-ALTD---------TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CeE-EccC---------CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 643 3331 1223567999999 444443 3333 555566 46666777767788888888873
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.8e-12 Score=135.85 Aligned_cols=205 Identities=20% Similarity=0.186 Sum_probs=135.2
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---CeEEEEECCCCeEEEEEeecCceE
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSI 111 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i 111 (817)
..|.+||..... ...+..+ ...+.+.+|+|||+. |+..+.+ ..|.+||+.+|+... +....+.+
T Consensus 176 ~~L~~~D~dG~~-----~~~l~~~-~~~v~~p~wSPDG~~------la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~ 242 (427)
T PRK02889 176 YQLQISDADGQN-----AQSALSS-PEPIISPAWSPDGTK------LAYVSFESKKPVVYVHDLATGRRRV-VANFKGSN 242 (427)
T ss_pred cEEEEECCCCCC-----ceEeccC-CCCcccceEcCCCCE------EEEEEccCCCcEEEEEECCCCCEEE-eecCCCCc
Confidence 357777775433 2333344 568899999999987 8776643 469999999987653 33344566
Q ss_pred EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE-EEeCCCcEEEEEecC-
Q 003467 112 WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA-LACDDGCVRIYRITD- 189 (817)
Q Consensus 112 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~- 189 (817)
...+|+|||. .|+ +.+.+|...||.+..
T Consensus 243 ~~~~~SPDG~--------------------------------------------------~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 243 SAPAWSPDGR--------------------------------------------------TLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cceEECCCCC--------------------------------------------------EEEEEEccCCCceEEEEECC
Confidence 7899999994 444 567788777776642
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEEC--CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~--~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
+..+ +.+..+.+......|+|||+.|+..+. +|...+|.+ .++. ...+.. .........|+|||
T Consensus 273 ~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~--------~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 273 GSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTF--------TGSYNTSPRISPDGK 340 (427)
T ss_pred CCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEec--------CCCCcCceEECCCCC
Confidence 2333 455556666778899999999887664 456666654 4443 333331 11223457899999
Q ss_pred eEEEEcCCC---cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 266 TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 266 ~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.++..+.++ .|.+||+.+++... +... .......|+|||+.|+.++.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 555554443 59999998876543 3322 3446789999999988876543
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.9e-12 Score=138.06 Aligned_cols=221 Identities=13% Similarity=0.059 Sum_probs=148.9
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEec---CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAARE---DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
..+.+..|...+.+.+|||||++||..+. +..|.+||+.+++. ..+... .+.+.+.+|+|||+. |
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-----~~l~~~-~g~~~~~~~SPDG~~------l 260 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-----ELVGNF-PGMTFAPRFSPDGRK------V 260 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----EEeecC-CCcccCcEECCCCCE------E
Confidence 34556778889999999999999998753 46899999988762 233333 456778999999986 6
Q ss_pred E-EeeCCC--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 82 F-SSSIDG--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 82 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+ +.+.++ .|.+||+.+++. ..+..+.+.....+|+||+.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~------------------------------------- 302 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS------------------------------------- 302 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCC-------------------------------------
Confidence 4 555555 488889988775 44555666677899999994
Q ss_pred CccccccccccCCEEEEEe-CC--CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC---CcEEEEEC
Q 003467 159 SDELHEQSVVEDRRVALAC-DD--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD---GYIRSWDA 232 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~ 232 (817)
.++..+ .+ ..|+++|+.++. . +.+..+.+.+....|+|||++|+..+.+ ..|.+||+
T Consensus 303 -------------~i~f~s~~~g~~~Iy~~d~~g~~-~---~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 303 -------------QIVFESDRSGSPQLYVMNADGSN-P---RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred -------------EEEEEECCCCCCeEEEEECCCCC-e---EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 454444 23 367788876443 3 3333345567778999999999887653 36888897
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEE-cCC-----CcEEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~-~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
.++. ...+. ....+..+.|+||| .|+.. ... ..+.++|+..+.. ..+.. .+.+...+|+|
T Consensus 366 ~~~~-~~~lt---------~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 366 DGSG-ERILT---------SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCc-eEecc---------CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 5543 33343 12246678999999 34333 222 2577888875443 44442 44567777776
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.50 E-value=2.8e-09 Score=103.69 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=90.4
Q ss_pred ecCCCCeEEEEecCCCcEEEEE-cCC-ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEE
Q 003467 488 SKASRKIICSTISNSGMLFAYS-DHV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY 565 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~-~~~-~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~ 565 (817)
.++...|.-..+..+++-++.+ .++ .+-+|+... + .. .......+.|.++..+|||++++++.....|.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~---~-e~-----kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG---G-EV-----KRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC---c-eE-----EEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3333445555566666655555 344 788998764 2 21 23445566899999999999999999999999
Q ss_pred EEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC----cEEEEECCCcceE
Q 003467 566 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----DVYIFNLEIQRQH 628 (817)
Q Consensus 566 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg----~i~vwd~~~~~~~ 628 (817)
++|+++|.....=+. ..+-|+.++|||+++|+|.+--+| .|++||+++++..
T Consensus 427 vididngnv~~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 427 VIDIDNGNVRLIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EEEecCCCeeEeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 999999876544333 578899999999999999998876 5899999876643
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=1.3e-12 Score=121.29 Aligned_cols=253 Identities=17% Similarity=0.207 Sum_probs=182.5
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC-CCCeEEEEEe-ecCceEEEEeeecCCCccceeec
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL-YDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~-~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
+...+.|+ ...|.+...-|...- +++.+.|.++++|-- +.|+--..+. ....++.++.+.+..
T Consensus 16 ll~~~eG~-~d~vn~~~l~~~e~g------v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-------- 80 (404)
T KOG1409|consen 16 LLSKIEGS-QDDVNAAILIPKEEG------VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-------- 80 (404)
T ss_pred hhhhhcCc-hhhhhhheeccCCCC------eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--------
Confidence 45566777 677888878787766 999999999999963 3444322222 234677888888776
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC-CCceeEeeccCCccceEE
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~ 207 (817)
..|++|-+.|++.-+.+.. -+.....+....|..+|.
T Consensus 81 ------------------------------------------~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~ 118 (404)
T KOG1409|consen 81 ------------------------------------------RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVS 118 (404)
T ss_pred ------------------------------------------eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhccee
Confidence 4899999999999998762 234444577788999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC--CCCe
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS--RHGT 285 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~--~~~~ 285 (817)
.+-|+...+++++.+.|..+.---.+.|..+..+... ....++.+.-. ....|...|.|.+-.+ ....
T Consensus 119 ~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~---------~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 119 AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE---------TPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred eEEecCCceeEEEeccccceEEEeeccCCcccceEee---------ccCCCCceeeE-EEEecccccceEEEEEeecCCc
Confidence 9999999999999999966654444455544333211 00011111101 3334555565554433 3466
Q ss_pred EEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeeccc
Q 003467 286 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 365 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 365 (817)
++.++.+|.+.+.+++|.+....|++|..|..+.+||+..... ....+.+|.+.|..+...
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g----------------~~~el~gh~~kV~~l~~~--- 249 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG----------------TAYELQGHNDKVQALSYA--- 249 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc----------------eeeeeccchhhhhhhhhh---
Confidence 7889999999999999999999999999999999999987763 456778999999988764
Q ss_pred CCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 366 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+-- ..|++++.||.|.+|+.+...
T Consensus 250 ------~~t------------------------~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 250 ------QHT------------------------RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ------hhh------------------------eeeeeccCCCeEEEEecccee
Confidence 222 389999999999999998644
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.2e-11 Score=120.83 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=139.9
Q ss_pred CCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccC
Q 003467 502 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 502 ~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 581 (817)
...++.+++...|+-++|+. |.-+ ..+....+.++++..++-..+|++|+.+|.|..||..+.+.+.++...
T Consensus 145 scDly~~gsg~evYRlNLEq---GrfL-----~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQ---GRFL-----NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred CccEEEeecCcceEEEEccc---cccc-----cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 34566677777777777765 4433 233444468999999999999999999999999999877766666543
Q ss_pred cccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeE
Q 003467 582 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV 661 (817)
Q Consensus 582 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i 661 (817)
..............|+++.|+.||-.+++|..+|.|.|||+.+.+....-......+|..+.|.+.+.+--++......+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL 296 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence 22111111113445999999999999999999999999999998876444433447999999988333333333445689
Q ss_pred EEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 662 YVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 662 ~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
+|||-.+|+. .........+..+++-|+ .+..+....+..|..+-+..
T Consensus 297 kiWd~~~Gk~------------~asiEpt~~lND~C~~p~-sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 297 KIWDECTGKP------------MASIEPTSDLNDFCFVPG-SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hhcccccCCc------------eeeccccCCcCceeeecC-CceEEEecCCCcceeEEccc
Confidence 9999999983 334455566999999996 44555555555555555544
No 248
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=6.6e-08 Score=110.24 Aligned_cols=408 Identities=14% Similarity=0.159 Sum_probs=231.2
Q ss_pred CEEEEEeCCCcEEEE----EecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec-
Q 003467 171 RRVALACDDGCVRIY----RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL- 245 (817)
Q Consensus 171 ~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~- 245 (817)
..++.+..+|.|.+. +.. ...+ .....-...|.+++||||+..|+..+.+++|.+-+- +...+.+.....
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~-~~~~---E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPD-EDEI---EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSD 162 (928)
T ss_pred CcEEEEECCceEEEEEccCCCC-Ccee---EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCcc
Confidence 478888888999988 443 2222 223334678999999999999999999999888752 222222211100
Q ss_pred ------------C----------CCC-----C---------C---CceeEEEeEEecCC-eEEEEcC---C---CcEEEE
Q 003467 246 ------------G----------GLG-----S---------G---PELCIWSLLSLRCG-TLVSADS---T---GSVQFW 279 (817)
Q Consensus 246 ------------~----------~~~-----~---------~---~~~~v~~v~~~~~~-~l~s~~~---d---g~i~iw 279 (817)
+ ++. + + ....-..++|-.|| ++++.+. . ..++||
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy 242 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVY 242 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEE
Confidence 0 000 0 0 22244568898999 4554442 2 469999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc---CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCcc
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV 356 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (817)
+-+ |.+..+-..-.+--.+++|-|.|+.|++... ...|.+|..++.+... ...........|
T Consensus 243 ~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--------------F~l~~~~~~~~v 307 (928)
T PF04762_consen 243 SRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--------------FTLRFDPEEEKV 307 (928)
T ss_pred CCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--------------EecCCCCCCcee
Confidence 987 7765554433444567899999999998754 4568888776654211 111122456678
Q ss_pred ceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCcee
Q 003467 357 RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 436 (817)
Q Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (817)
..|.|+ +|+. .|+..-.|. |.+|-..+..=+....+. .+ ...
T Consensus 308 ~~l~Wn---------~ds~------------------------iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~---~~~ 349 (928)
T PF04762_consen 308 IELAWN---------SDSE------------------------ILAVWLEDR-VQLWTRSNYHWYLKQEIR-FS---SSE 349 (928)
T ss_pred eEEEEC---------CCCC------------------------EEEEEecCC-ceEEEeeCCEEEEEEEEE-cc---CCC
Confidence 999997 6764 777766555 999988775422211111 00 001
Q ss_pred eecceeecCC---eEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecC-CCcEEEEEcCC
Q 003467 437 LVHNTIFSHT---SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHV 512 (817)
Q Consensus 437 ~~~~~~~s~~---~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~la~~~~~ 512 (817)
....+.|+|. ...+.+..+.+..+++...... +-..+| |.-.+++-+..
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~---------------------------s~~~~~~D~g~vaVIDG~ 402 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR---------------------------SPGSSPNDNGTVAVIDGN 402 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe---------------------------cCCCCccCceEEEEEeCC
Confidence 1122566653 2334444355544443321100 000112 22345555666
Q ss_pred ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceee--------eeccCccc
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH--------TFTPCREE 584 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~--------~~~~~~~~ 584 (817)
.+.+-.+....-...+ ......++ ..|.+++|++++..+++...||.|.+|......... .+... ..
T Consensus 403 ~lllTpf~~a~VPPPM-s~~~l~~~---~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 477 (928)
T PF04762_consen 403 KLLLTPFRRAVVPPPM-SSYELELP---SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD-SM 477 (928)
T ss_pred eEEEecccccCCCchH-hceEEcCC---CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc-cc
Confidence 6666665541111110 00112222 379999999999999999999999999965432211 11100 00
Q ss_pred ccccCCCCCCceeEEEEccCCCEEEEEeCC---CcEEEEECCCcceE---EEEecCCCCCeEEEEecCCCCCeEEEEecC
Q 003467 585 HDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQH---WFISRLEGASVTAAGFPPQNNNVLIITTSS 658 (817)
Q Consensus 585 ~~~~~~~~~~~i~~l~~s~dg~~la~~~~d---g~i~vwd~~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d 658 (817)
...........+..++|..+...++..+.+ ..+.++++...+.. ...... ...+..+...+ +...++.-..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~q~~~ 555 (928)
T PF04762_consen 478 DISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEV-DGVVLIISSSP-DSGSLYIQTND 555 (928)
T ss_pred cccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEecc-CceEEEEeeCC-CCcEEEEEECC
Confidence 000111134567889998888877777665 57888888543321 112111 23555555665 54457788889
Q ss_pred CeEEEEEcCCCc
Q 003467 659 NQVYVFDVEAKQ 670 (817)
Q Consensus 659 ~~i~vwd~~~~~ 670 (817)
|.++.++.....
T Consensus 556 G~v~~~~~~~~~ 567 (928)
T PF04762_consen 556 GKVFQLSSDGEL 567 (928)
T ss_pred CEEEEeecCCCc
Confidence 999877766553
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=7.9e-12 Score=118.36 Aligned_cols=256 Identities=17% Similarity=0.223 Sum_probs=180.7
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEE------eecCceEEEEeeecCCCccceeeccCccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVL------QSIDFSIWQMAVAPSNSSLMHAVTNSDHI 133 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~------~~~~~~i~~~~~s~~~~~~~~~~~~~~~~ 133 (817)
...|++++|.-+++. ..|...+.|..+.....+...+...+ ....++|..++.. +
T Consensus 55 ~~ris~l~~~~d~~t----evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-------------- 115 (412)
T KOG3881|consen 55 LDRISSLLFGVDGET----EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-------------- 115 (412)
T ss_pred hhhhhhheeecCCce----eEeeccccCcccccccccCCccccccccccccccccccccchhhc-C--------------
Confidence 568999999988776 55665556767777776665544332 1122333333322 1
Q ss_pred cCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCcee-EeeccCCccceEEEEEEc
Q 003467 134 GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI-YHRSLPRVSGRVLSVTWS 212 (817)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s 212 (817)
..|.+|-.+|.+.+|....+..-. ....+..+ ..+..|.-+
T Consensus 116 -------------------------------------g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~ 157 (412)
T KOG3881|consen 116 -------------------------------------GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQT 157 (412)
T ss_pred -------------------------------------CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccC
Confidence 288899999999999987332100 00112222 345566666
Q ss_pred cCCCE-EEEeeCC--CcEEEEECCCCceEEEEEeecC-CCCCCCceeEEEeEEecC--C-eEEEEcCCCcEEEEeCCCC-
Q 003467 213 ADGNM-LYSGSSD--GYIRSWDAKLGYEIYRITVGLG-GLGSGPELCIWSLLSLRC--G-TLVSADSTGSVQFWDSRHG- 284 (817)
Q Consensus 213 ~dg~~-l~s~~~d--g~i~vwd~~~g~~~~~~~~~~~-~~~~~~~~~v~~v~~~~~--~-~l~s~~~dg~i~iwd~~~~- 284 (817)
+...+ +++|+.. ..+.+||++..+.+.+-..... ........++.++.|.+. . .|++++.-+.+++||.+.+
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred CCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC
Confidence 65555 4558888 7899999998866665442211 111123445567889877 3 7999999999999999975
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
+++..+......+.++...|++++|++|..-|.+..||++.+.. ....+.+-++.++++...
T Consensus 238 RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl----------------~g~~~kg~tGsirsih~h-- 299 (412)
T KOG3881|consen 238 RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL----------------LGCGLKGITGSIRSIHCH-- 299 (412)
T ss_pred cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee----------------eccccCCccCCcceEEEc--
Confidence 46788888889999999999999999999999999999999883 233478889999999886
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccccc
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~ 421 (817)
|.. ++|+++|.|..|+++|+.+.+.+
T Consensus 300 -------p~~------------------------~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 300 -------PTH------------------------PVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred -------CCC------------------------ceEEeeccceeEEEeecccchhh
Confidence 444 49999999999999999985533
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1e-11 Score=115.27 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=154.9
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC-CcEEEEEEcCCC-----------CCcEEEEEEeecCCCCCCCce
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS-GWHCQLTVHGDP-----------KSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~g~~-----------~~~V~~l~~s~~~~~~~~~~~ 80 (817)
..-|.++.|...|.+||+|..+|.|.++.-..... .+.....++.|. ...|..+.|.+++.. ..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~----a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL----AE 100 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc----cE
Confidence 35689999999999999999999999997553221 222344444442 247899999999876 66
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
++..+.|.+|++|-+....... .+..-+-.. .|.+- ...
T Consensus 101 FLlstNdktiKlWKi~er~~k~--~~~~~~~~~---~~~~~-------------------------------~~l----- 139 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKK--EGYNLPEEG---PPGTI-------------------------------TSL----- 139 (433)
T ss_pred EEEecCCcceeeeeeecccccc--ccccccccC---CCCcc-------------------------------cee-----
Confidence 7778899999999987543222 100000000 00000 000
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeec-cCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS-LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
+..+.+..|-.+ .... .+. -..|+-.|.++.++.|+..++++. |=.|.+|+++--..-.
T Consensus 140 ----------r~p~~~~~~~~v-ea~p--------rRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sF 199 (433)
T KOG1354|consen 140 ----------RLPVEGRHDLEV-EASP--------RRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSF 199 (433)
T ss_pred ----------eceeecccccee-eeee--------eeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCce
Confidence 011111111111 1110 022 236888999999999999998874 5689999987543333
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEE----------------eecCccCeeEEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQA----------------HSFHKGDVNALA 301 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~----------------~~~h~~~v~~l~ 301 (817)
.+-.-...........|++..|+|.. .++-.++.|+|++-|++...+... +..--..|..+.
T Consensus 200 nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK 279 (433)
T KOG1354|consen 200 NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK 279 (433)
T ss_pred eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence 33211111111234467888899876 788899999999999985332111 112235688899
Q ss_pred EecCCCEEEEEccCCcEEEEEeeccc
Q 003467 302 AAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
|+++|+++++-.. -+|++||++...
T Consensus 280 Fs~sGryilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 280 FSHSGRYILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred EccCCcEEEEecc-ceeEEEeccccC
Confidence 9999999987643 589999996543
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=8.8e-12 Score=115.18 Aligned_cols=158 Identities=16% Similarity=0.290 Sum_probs=111.8
Q ss_pred EEEEECCCCCeEEEEec----------CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe--
Q 003467 17 VALATSADDSQVAAARE----------DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-- 84 (817)
Q Consensus 17 ~~la~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-- 84 (817)
..|.|+|+|.+|++-.. -|...||-+..... ....+.-...+.|.+++|+|+|+. +|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~------favi~g 79 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNE------FAVIYG 79 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCE------EEEEEc
Confidence 35778999998876422 24567776643322 122333222457999999999986 6554
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
..++.|.+||++ ++.+..+. ...+..+.|+|+|
T Consensus 80 ~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G-------------------------------------------- 112 (194)
T PF08662_consen 80 SMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDG-------------------------------------------- 112 (194)
T ss_pred cCCcccEEEcCc-ccEeEeec--CCCceEEEECCCC--------------------------------------------
Confidence 356799999996 66666664 5677899999999
Q ss_pred cccccCCEEEEEeC---CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC------CCcEEEEECCCC
Q 003467 165 QSVVEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLG 235 (817)
Q Consensus 165 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~------dg~i~vwd~~~g 235 (817)
++|++++. .|.|.+||..+.+.+ .... | ..+..++|+|||++|+++.. |..++||+. .|
T Consensus 113 ------~~l~~~g~~n~~G~l~~wd~~~~~~i---~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G 180 (194)
T PF08662_consen 113 ------RFLVLAGFGNLNGDLEFWDVRKKKKI---STFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QG 180 (194)
T ss_pred ------CEEEEEEccCCCcEEEEEECCCCEEe---eccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cC
Confidence 46776653 467999999854443 3332 3 34789999999999999875 788999998 58
Q ss_pred ceEEEEE
Q 003467 236 YEIYRIT 242 (817)
Q Consensus 236 ~~~~~~~ 242 (817)
+.+.+..
T Consensus 181 ~~l~~~~ 187 (194)
T PF08662_consen 181 RLLYKKP 187 (194)
T ss_pred eEeEecc
Confidence 7776654
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=2e-10 Score=112.75 Aligned_cols=319 Identities=14% Similarity=0.132 Sum_probs=195.4
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC---------------
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG--------------- 316 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg--------------- 316 (817)
..-++..+++||.|+++....-..|.+|+...+..+..+. ..+|..+.|+|++++|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 5667888999999976665556669999999877666665 47899999999999999865433
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc--cc-eeEeecccCCCCCCCccccccccCCCCCcccccccc
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD--VR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 393 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
.+.+||..++. .+..+...... .. -+.|+ -+++
T Consensus 109 ~~~vwd~~sg~-----------------iv~sf~~~~q~~~~Wp~~k~s---------~~D~------------------ 144 (561)
T COG5354 109 NVFVWDIASGM-----------------IVFSFNGISQPYLGWPVLKFS---------IDDK------------------ 144 (561)
T ss_pred ceeEEeccCce-----------------eEeeccccCCcccccceeeee---------ecch------------------
Confidence 48889988887 44444443332 21 22332 1221
Q ss_pred ccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCe--EEEEEe-------CCeEEEEEecc
Q 003467 394 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS--LLLVQY-------SCRLDILSVRL 464 (817)
Q Consensus 394 ~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~~-------~~~i~i~~~~~ 464 (817)
+++ --....+.++++...-...+.. .. ....+....++|.+ ..++.. ...+.+|.+..
T Consensus 145 ------y~A-Rvv~~sl~i~e~t~n~~~~p~~--~l----r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 145 ------YVA-RVVGSSLYIHEITDNIEEHPFK--NL----RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred ------hhh-hhccCeEEEEecCCccccCchh--hc----cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 111 1134567788852211111110 00 12345556666653 222211 12666676653
Q ss_pred cCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEc------------CCceEEEEeecCCCCCceEEEe
Q 003467 465 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD------------HVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 465 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~------------~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
... +....+- .-.-..+-|.+.|.++++-. ...++|+++.. ...+
T Consensus 212 ~s~---------------l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~----- 268 (561)
T COG5354 212 NSV---------------LVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIP----- 268 (561)
T ss_pred CCe---------------eeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccc-----
Confidence 221 1111100 01123456778887765511 13455555542 1111
Q ss_pred eecCCccccceeEEEEecCCCEEEEEe--cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEE
Q 003467 533 KRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 610 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fspd~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 610 (817)
... ...++|...+|.|+++.+++.+ .+..+.++|+... +...+. ...=+.+.|||.++|++.
T Consensus 269 -V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-------------e~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 269 -VEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-------------EQKRNTIFFSPHERYILF 332 (561)
T ss_pred -eec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-------------CcccccccccCcccEEEE
Confidence 111 3345899999999999988766 4778999998754 555554 344566789999999999
Q ss_pred EeCC---CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe------cCCeEEEEEcCCCcc
Q 003467 611 VNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQL 671 (817)
Q Consensus 611 ~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~------~d~~i~vwd~~~~~~ 671 (817)
++-| |.|.+||..+...... ...+..-+-+.|+| |++++.+.. .|+.|.+||+.+...
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~--~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAG--AFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred ecCCccccceEEeccCCceEEEE--EeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence 8765 6899999887665431 22333556778999 999888874 378999999988764
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=2.1e-09 Score=106.81 Aligned_cols=267 Identities=14% Similarity=0.086 Sum_probs=168.1
Q ss_pred CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e-EEEEc---------CCCcEEEEeCCCCeEEEEeecC
Q 003467 225 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSAD---------STGSVQFWDSRHGTLLQAHSFH 293 (817)
Q Consensus 225 g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~---------~dg~i~iwd~~~~~~~~~~~~h 293 (817)
+.|.+.|..+++.+..+..+ .... .+ ++||| . +++.+ .+..|.+||..+++.+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G-------~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG-------FLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc-------CCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 79999999999999988853 2111 23 88999 3 44555 5788999999999999888742
Q ss_pred c-------cCeeEEEEecCCCEEEEEc-c-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 294 K-------GDVNALAAAPSHNRVFSTG-S-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 294 ~-------~~v~~l~~s~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
. .....++++|||++|++.. . +..|.+.|+.+++ .+..+..
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-----------------vv~ei~v------------- 146 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-----------------FVRMMDV------------- 146 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-----------------EEEEEeC-------------
Confidence 2 2334789999999999775 3 7899999999887 3333322
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec--------CCCeEEEEeCCcccccCCcccCCCCCCCcee
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--------DDTKLFAYCANEFTKFSPHEICPAPQRVPIH 436 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (817)
|++. .++..+ .||......+.
T Consensus 147 -------p~~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d-------------------- 175 (352)
T TIGR02658 147 -------PDCY------------------------HIFPTANDTFFMHCRDGSLAKVGYG-------------------- 175 (352)
T ss_pred -------CCCc------------------------EEEEecCCccEEEeecCceEEEEec--------------------
Confidence 2322 222222 22222222111
Q ss_pred eecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecC-CCcEEEEEcCCceE
Q 003467 437 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHVKPS 515 (817)
Q Consensus 437 ~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~la~~~~~~i~ 515 (817)
.+|+.. . ....+++-... .+ . ... .+++ +|+++.++..|.+.
T Consensus 176 --------~~g~~~-~--~~~~vf~~~~~----------------~v----~--~rP----~~~~~dg~~~~vs~eG~V~ 218 (352)
T TIGR02658 176 --------TKGNPK-I--KPTEVFHPEDE----------------YL----I--NHP----AYSNKSGRLVWPTYTGKIF 218 (352)
T ss_pred --------CCCceE-E--eeeeeecCCcc----------------cc----c--cCC----ceEcCCCcEEEEecCCeEE
Confidence 111100 0 00011100000 00 0 011 3455 88888887779988
Q ss_pred EEEeecCCC-CCceEEEeeecCC--c-cccceeEEEEecCCCEEEEEec----------CCcEEEEEccCCceeeeeccC
Q 003467 516 LFELKKGKV-GQGEWIINKRQLP--R-KLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 516 l~~~~~~~~-~~~~~~~~~~~~~--~-~~~~i~~~~fspd~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~ 581 (817)
+.++..... ....|.+...... + ......-++++||++++++... .+.|.++|..+++.+..+..
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 888654111 1122222111100 0 1123445999999999988532 24799999999999999884
Q ss_pred cccccccCCCCCCceeEEEEccCCC-EEEEEe-CCCcEEEEECCCcceEEEE
Q 003467 582 REEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFI 631 (817)
Q Consensus 582 ~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~ 631 (817)
...+..+++||||+ +|++.+ .++.|.|+|..+++....+
T Consensus 298 -----------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 298 -----------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -----------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 66899999999999 887776 5788999999999987776
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=1.9e-09 Score=110.89 Aligned_cols=257 Identities=19% Similarity=0.173 Sum_probs=164.8
Q ss_pred CceEEEEECCCCCeEEEEec----CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CC
Q 003467 14 SPVVALATSADDSQVAAARE----DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DG 88 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~ 88 (817)
..-+.|+++|++++|.+... +|.|..|++....-........... ...-..++++|++++ |+++.. +|
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-g~~p~~i~~~~~g~~------l~vany~~g 109 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-GSSPCHIAVDPDGRF------LYVANYGGG 109 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-SSCEEEEEECTTSSE------EEEEETTTT
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-CCCcEEEEEecCCCE------EEEEEccCC
Confidence 34456889999999988865 5789999988642112223333311 346678999999998 888774 89
Q ss_pred eEEEEECCC-CeEEEEE--ee-----------cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 89 SVSEWDLYD-LKQKIVL--QS-----------IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 89 ~i~vwd~~~-~~~~~~~--~~-----------~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
+|.++++.. |...... .. ......++.++|++..
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-------------------------------- 157 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-------------------------------- 157 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE--------------------------------
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE--------------------------------
Confidence 999999986 5544331 11 2345678889998842
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCC-ceeEeeccC-CccceEEEEEEccCCCEEEEeeC-CCcEEEEE
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSS-DGYIRSWD 231 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd 231 (817)
.+++.-....|++|++.... .+.....+. .....-..++|+|++++++..++ +++|.+++
T Consensus 158 -----------------v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 158 -----------------VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp -----------------EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred -----------------EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 33333445689999997544 243222222 33456789999999999877665 67899999
Q ss_pred CC--CCceEEEEEeecCCCCCCCceeEEEeEEecCCe--EEEEcCCCcEEEEeCC--CCe--EEEEeecCccCeeEEEEe
Q 003467 232 AK--LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT--LVSADSTGSVQFWDSR--HGT--LLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 232 ~~--~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--l~s~~~dg~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~s 303 (817)
+. +|.....-.....+...........++++|||+ +++......|.+|++. +++ .+..+.........++++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 88 443322222211111112223688899999993 5566667789999983 333 344555444558999999
Q ss_pred cCCCEEEEEc-cCCcEEEEEeecc
Q 003467 304 PSHNRVFSTG-SDGQVILYKASCE 326 (817)
Q Consensus 304 ~~~~~l~~~~-~dg~i~iw~~~~~ 326 (817)
|+|++|+++. .++.|.+|+++..
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCCEEEEEecCCCeEEEEEEeCC
Confidence 9999999876 4779999988643
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=1.4e-11 Score=114.64 Aligned_cols=245 Identities=14% Similarity=0.214 Sum_probs=172.3
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecC-CCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVS-PGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
++++||-+.|++...-|...-+.+.+.|.+++||--. .++ -|.-+... -..+++++.+.++... |+.+-
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q-~wpsI~~~---mP~~~~~~~y~~e~~~------L~vg~ 87 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ-YWPSIYHY---MPSPCSAMEYVSESRR------LYVGQ 87 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc-cCchhhhh---CCCCceEeeeeccceE------EEEEE
Confidence 6789999999999999988889999999999999544 333 23222222 2467899999988765 99999
Q ss_pred CCCeEEEEECC----CCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 86 IDGSVSEWDLY----DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 86 ~d~~i~vwd~~----~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
..|++..+.+. .....+....|..++..+-|+......++.+.+..-....+-... +-+...
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~--------------~lg~Y~ 153 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN--------------RLGGYN 153 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC--------------cccceE
Confidence 99999999764 444556777899999999998887766655443321111111000 000000
Q ss_pred cccccccc---CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 162 LHEQSVVE---DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 162 ~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
..+.+.+. =.+...|...|.|.+-.+. ...+....++.+|.+.+.+++|.|....|.+|..|..+.+||+.-.+.+
T Consensus 154 ~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~-~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 154 FETPASALQFDALYAFVGDHSGQITMLKLE-QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred eeccCCCCceeeEEEEecccccceEEEEEe-ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 00000000 0145566667777777765 3345556889999999999999999999999999999999999755443
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~ 283 (817)
.-... +|...|..+.+.+-- ++++++.||.|-+||.+.
T Consensus 233 ~~el~-------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 233 AYELQ-------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeec-------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 33222 688888888887766 799999999999999874
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=8.6e-11 Score=125.85 Aligned_cols=204 Identities=19% Similarity=0.148 Sum_probs=137.1
Q ss_pred cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---CeEEEEECCCCeEEEEEeecCceEE
Q 003467 36 SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIW 112 (817)
Q Consensus 36 ~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i~ 112 (817)
.|.++|..... ...+..+ ...+...+|+|||++ |+.++.+ ..|.+||+.+++... +..+.+.+.
T Consensus 171 ~l~~~d~~g~~-----~~~l~~~-~~~~~~p~~Spdg~~------la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~ 237 (417)
T TIGR02800 171 ELQVADYDGAN-----PQTITRS-REPILSPAWSPDGQK------LAYVSFESGKPEIYVQDLATGQREK-VASFPGMNG 237 (417)
T ss_pred eEEEEcCCCCC-----CEEeecC-CCceecccCCCCCCE------EEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCcc
Confidence 58888876544 2333333 457889999999987 8776543 479999999986543 334556677
Q ss_pred EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC--cEEEEEecCC
Q 003467 113 QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG--CVRIYRITDS 190 (817)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 190 (817)
+++|+||+.. ++++.+.++ .|++|++.++
T Consensus 238 ~~~~spDg~~-------------------------------------------------l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 238 APAFSPDGSK-------------------------------------------------LAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred ceEECCCCCE-------------------------------------------------EEEEECCCCCccEEEEECCCC
Confidence 8999999842 233444444 5888888754
Q ss_pred CceeEeeccCCccceEEEEEEccCCCEEEEeeCC-C--cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e
Q 003467 191 DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T 266 (817)
Q Consensus 191 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g--~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 266 (817)
.. ..+..+.......+|+|||++|+..+.. + .|.++|+.+++. ..+. .+......+.|+|+| .
T Consensus 269 ~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~--------~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 269 QL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLT--------FRGGYNASPSWSPDGDL 335 (417)
T ss_pred CE----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee--------cCCCCccCeEECCCCCE
Confidence 33 3444455555678999999998876653 3 588888876654 3443 234456678899999 5
Q ss_pred EEEEcCCC---cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 267 LVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 267 l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
++.++.++ .|.+||+.++.. ..+... ......+|+||++.|+..+.++
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 66665554 688999987553 333322 2345678999999988876654
No 257
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.1e-11 Score=114.43 Aligned_cols=225 Identities=15% Similarity=0.203 Sum_probs=160.9
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC--CeEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID--GSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--~~i~ 91 (817)
.+|..++.. || +|.+|-.+|.+.+|....+...-.....+..+ ..+..|.-++..++ .+++||.. ..+.
T Consensus 106 ~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~-----Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 106 KSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPY-----IVATGGKENINELK 176 (412)
T ss_pred ccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCc-----eEecCchhccccee
Confidence 444444443 33 57777888999999998443111112233322 35666666666654 35558877 7899
Q ss_pred EEECCCCeEEEEEeec-------CceEE--EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 92 EWDLYDLKQKIVLQSI-------DFSIW--QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~-------~~~i~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+||++..+++.+-+.- .-+|| .+.|-+....
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~---------------------------------------- 216 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN---------------------------------------- 216 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCC----------------------------------------
Confidence 9999998666544321 12343 4566555321
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
..+|+++.-+.+++||...+..+. ..+.--+..|+++...|+|++|++|..-|.+..+|++.++......
T Consensus 217 --------~~fat~T~~hqvR~YDt~~qRRPV--~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 217 --------YKFATITRYHQVRLYDTRHQRRPV--AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred --------ceEEEEecceeEEEecCcccCcce--eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 489999999999999998666554 4455557789999999999999999999999999999998877632
Q ss_pred eecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecC
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
. +..+.|.++..+|.+ .+++++-|..|+|+|+++.+++..... ...++++.+.++
T Consensus 287 k-------g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 287 K-------GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred C-------CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 1 688899999999997 799999999999999999777655432 455666666544
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=8.3e-10 Score=116.05 Aligned_cols=310 Identities=16% Similarity=0.190 Sum_probs=186.3
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCc
Q 003467 215 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 294 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 294 (817)
+..+++++.+|.|..+|..+|+.+.+..... .....+. ..++.++.++.+|.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~~~p~-v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE--------RLSGGVG-ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC--------CcccceE-EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 6788899999999999999999988776421 1111122 235688889999999999999999987765432
Q ss_pred cCeeE-EEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC-ccceeEeecccCCCCCCC
Q 003467 295 GDVNA-LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRALTVAVPISREDPLP 372 (817)
Q Consensus 295 ~~v~~-l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~ 372 (817)
.+.+ ... .+..++.++.++.+..||..+++ ..|........... ...+..+ .
T Consensus 136 -~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~-------------~~W~~~~~~~~~~~~~~~sp~~----------~ 189 (377)
T TIGR03300 136 -EVLSPPLV--ANGLVVVRTNDGRLTALDAATGE-------------RLWTYSRVTPALTLRGSASPVI----------A 189 (377)
T ss_pred -eeecCCEE--ECCEEEEECCCCeEEEEEcCCCc-------------eeeEEccCCCceeecCCCCCEE----------E
Confidence 2222 222 24568888889999999998877 23432111000000 0000011 0
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
+ ..++.+..++.+..+|..+...
T Consensus 190 ~-------------------------~~v~~~~~~g~v~ald~~tG~~-------------------------------- 212 (377)
T TIGR03300 190 D-------------------------GGVLVGFAGGKLVALDLQTGQP-------------------------------- 212 (377)
T ss_pred C-------------------------CEEEEECCCCEEEEEEccCCCE--------------------------------
Confidence 1 2677788888888888766432
Q ss_pred eCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEe
Q 003467 453 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 453 ~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
+|........ +... ...+. ....+..+ .++..++.+.++.+..|+... +..+|...
T Consensus 213 ------~W~~~~~~~~-------g~~~---~~~~~----~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~ 268 (377)
T TIGR03300 213 ------LWEQRVALPK-------GRTE---LERLV----DVDGDPVV-DGGQVYAVSYQGRVAALDLRS---GRVLWKRD 268 (377)
T ss_pred ------eeeeccccCC-------CCCc---hhhhh----ccCCccEE-ECCEEEEEEcCCEEEEEECCC---CcEEEeec
Confidence 2221110000 0000 00000 00000011 244555556778888888764 66777654
Q ss_pred eecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe
Q 003467 533 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 612 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 612 (817)
. .. .... ..++..+++++.+|.++.+|..+|+.+...... .......... .+..|++++
T Consensus 269 ~---~~----~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 269 A---SS----YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL----------KYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred c---CC----ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc----------cCCccccCEE--ECCEEEEEe
Confidence 1 11 1112 235778888889999999999999887655321 1112222222 467999999
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEE
Q 003467 613 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 664 (817)
Q Consensus 613 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vw 664 (817)
.+|.|+++|..+++..+.++........+.++. ++ .|++++.||.|+.|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CC-EEEEEeCCceEEEe
Confidence 999999999999999988865332122333443 33 58899999999876
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.6e-11 Score=125.65 Aligned_cols=221 Identities=15% Similarity=0.089 Sum_probs=139.9
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEec-C--CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAARE-D--GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
.|.+..++..+.+.+|||||++||..+. + ..|.+||+.+++. ..+... .+.....+|+|||+. |+
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-----~~lt~~-~g~~~~~~wSPDG~~------La 277 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-----EKVTSF-PGINGAPRFSPDGKK------LA 277 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEecCC-CCCcCCeeECCCCCE------EE
Confidence 3445556677889999999999998643 2 3588889988762 222221 233457899999986 65
Q ss_pred E-eeCCCe--EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 83 S-SSIDGS--VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 83 s-~~~d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
. .+.++. |.+||+.+++.. .+..+.......+|+||+.
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~-------------------------------------- 318 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGK-------------------------------------- 318 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCC--------------------------------------
Confidence 4 455554 888899887644 4444555667789999985
Q ss_pred ccccccccccCCEEEEE-eCCC--cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-C--cEEEEECC
Q 003467 160 DELHEQSVVEDRRVALA-CDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G--YIRSWDAK 233 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g--~i~vwd~~ 233 (817)
.++.. ..++ .|+++|+.+++.. .+..........+|+|||++|+..+.+ + .|.++|+.
T Consensus 319 ------------~I~f~s~~~g~~~Iy~~dl~~g~~~----~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 319 ------------SLIFTSERGGKPQIYRVNLASGKVS----RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred ------------EEEEEECCCCCceEEEEECCCCCEE----EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 34333 3334 4666666544432 221122233457899999999876653 3 46667887
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEE-EEcCCCc--EEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-s~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
+++. ..+.. . .......|+||| .|+ +...+|. +.+++. +|.....+..+.+.+...+|+|
T Consensus 383 ~g~~-~~lt~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 383 TGAM-QVLTS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCe-EEccC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7754 23331 1 112245799999 343 3444444 677787 4777777777777788888887
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=6.3e-11 Score=126.91 Aligned_cols=218 Identities=20% Similarity=0.165 Sum_probs=140.1
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF- 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~- 82 (817)
+.+..+...+...+|||||++||.+..+ ..|.+||+.+++. ..+..+ .+.+.+++|+|||+. |+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-----~~~~~~-~~~~~~~~~spDg~~------l~~ 250 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-----EKVASF-PGMNGAPAFSPDGSK------LAV 250 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-----EEeecC-CCCccceEECCCCCE------EEE
Confidence 4444566678999999999999987543 4799999988762 222222 355677999999986 65
Q ss_pred EeeCC--CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 83 SSSID--GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 83 s~~~d--~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+.+.+ ..|.+||+.++... .+..+.......+|+|++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~--------------------------------------- 290 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGK--------------------------------------- 290 (417)
T ss_pred EECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCC---------------------------------------
Confidence 44444 35999999887643 3444444555678899884
Q ss_pred cccccccccCCEEEEEeC-CC--cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC---cEEEEECCC
Q 003467 161 ELHEQSVVEDRRVALACD-DG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---YIRSWDAKL 234 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~~ 234 (817)
.|+..+. .+ .|+++++.+++. ..+..+...+..++|+|+|++|+.++.++ .|.+||+.+
T Consensus 291 -----------~l~~~s~~~g~~~iy~~d~~~~~~----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 291 -----------SIAFTSDRGGSPQIYMMDADGGEV----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred -----------EEEEEECCCCCceEEEEECCCCCE----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 4544433 33 577777764432 33344455677889999999999988775 799999887
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC---cEEEEeCCCCeEEEEeecCccCeeEEEE
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNALAA 302 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 302 (817)
+.. ..+.. ........|+||| .|+..+.++ .+.+.+.. +.....+..+.+.+..++|
T Consensus 356 ~~~-~~l~~---------~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 356 GGE-RVLTD---------TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCe-EEccC---------CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 543 23321 1123456799999 455554433 35555544 5555555544445544444
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=8.3e-10 Score=108.55 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=160.3
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC----
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG---- 88 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~---- 88 (817)
.-++....+||.|++|++....| |.+|.-..... ...+. ...|..+.|||.++| |.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~----l~~~~---~~~V~~~~fSP~~kY------L~tw~~~pi~~p 97 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK----LVRFR---HPDVKYLDFSPNEKY------LVTWSREPIIEP 97 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhh----eeeee---cCCceecccCcccce------eeeeccCCccCh
Confidence 34788899999999999987755 99999876552 33343 247999999999998 88865533
Q ss_pred -----------eEEEEECCCCeEEEEEeecCce--EE-EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 89 -----------SVSEWDLYDLKQKIVLQSIDFS--IW-QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 89 -----------~i~vwd~~~~~~~~~~~~~~~~--i~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
.+.+||..+|..+..+.....+ .| -+.|+-+..+.+
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A------------------------------ 147 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA------------------------------ 147 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh------------------------------
Confidence 4899999999999999877766 77 788888774321
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC--EEEE-----eeCCCcE
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN--MLYS-----GSSDGYI 227 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~--~l~s-----~~~dg~i 227 (817)
++ ....++|+++...-.....+.++ ...|+..+|+|.++ .|++ .+.++++
T Consensus 148 -----------------Rv----v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 148 -----------------RV----VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred -----------------hh----ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 22 23568999973221111112222 35688889999743 3443 4667899
Q ss_pred EEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEE---Ec--------CCCcEEEEeCCCCeEEEEeecCcc
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVS---AD--------STGSVQFWDSRHGTLLQAHSFHKG 295 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s---~~--------~dg~i~iwd~~~~~~~~~~~~h~~ 295 (817)
++|.+..+..+..-.. ....=..+.|.+.|. |++ .. ....+.++++. +..+.......+
T Consensus 205 ~i~sIp~~s~l~tk~l--------fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~ 275 (561)
T COG5354 205 RILSIPKNSVLVTKNL--------FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKD 275 (561)
T ss_pred EEEEccCCCeeeeeee--------EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccc
Confidence 9999987776655442 222223466777772 111 11 12357788877 333333335578
Q ss_pred CeeEEEEecCCCEEEEE--ccCCcEEEEEeecc
Q 003467 296 DVNALAAAPSHNRVFST--GSDGQVILYKASCE 326 (817)
Q Consensus 296 ~v~~l~~s~~~~~l~~~--~~dg~i~iw~~~~~ 326 (817)
+|...+|.|.++.+++. -.+..+.++++...
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc
Confidence 99999999999877754 45788888888764
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.6e-10 Score=121.57 Aligned_cols=225 Identities=16% Similarity=0.071 Sum_probs=139.0
Q ss_pred eeeccCCCceEEEEECCCCCeEE---EEecCC--cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 7 SSIDWKPSPVVALATSADDSQVA---AAREDG--SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la---~~~~dg--~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
|.+...+..+..-+|||||+.++ +...+| .|.+.++.+++. ..+..+. +.....+|||||+. |
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~----g~~~~p~wSPDG~~------L 245 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQ----GNQLMPTFSPRKKL------L 245 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCC----CCccceEECCCCCE------E
Confidence 33444556677889999998644 344443 577778887763 1222222 34457899999987 7
Q ss_pred EEeeC-----CCeEEEEECCCC---eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 82 FSSSI-----DGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 82 ~s~~~-----d~~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
+..+. +..+..|++.++ +..+......+.....+|+|||.
T Consensus 246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~-------------------------------- 293 (428)
T PRK01029 246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT-------------------------------- 293 (428)
T ss_pred EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC--------------------------------
Confidence 65542 234555777653 33333333334456789999994
Q ss_pred CCCCCCccccccccccCCEEEEEe-CCCcEEEEEe--cC-CCceeEeeccCCccceEEEEEEccCCCEEEEeeCC---Cc
Q 003467 154 ENDSDSDELHEQSVVEDRRVALAC-DDGCVRIYRI--TD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD---GY 226 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---g~ 226 (817)
.|+..+ .+|...||.+ .. +... +.+..+...+...+|+|||++|+..+.+ ..
T Consensus 294 ------------------~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~ 352 (428)
T PRK01029 294 ------------------RLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ 352 (428)
T ss_pred ------------------EEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeECCCCCEEEEEEcCCCCcE
Confidence 444443 4565555544 32 2222 4444455677889999999999877653 46
Q ss_pred EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEE-EEcC--CCcEEEEeCCCCeEEEEeecCccCeeEEEE
Q 003467 227 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADS--TGSVQFWDSRHGTLLQAHSFHKGDVNALAA 302 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 302 (817)
|.+||+.+++.. .+. .....+....|+||| .|+ ++.. ...|.++|+..++... +....+.+...+|
T Consensus 353 I~v~dl~~g~~~-~Lt--------~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~W 422 (428)
T PRK01029 353 ICVYDLATGRDY-QLT--------TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK-IVIGSGEKRFPSW 422 (428)
T ss_pred EEEEECCCCCeE-Ecc--------CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCcccCcee
Confidence 999999888654 333 122345678899999 344 3333 3458888998766543 3334566778888
Q ss_pred ecCC
Q 003467 303 APSH 306 (817)
Q Consensus 303 s~~~ 306 (817)
+|-.
T Consensus 423 s~~~ 426 (428)
T PRK01029 423 GAFP 426 (428)
T ss_pred cCCC
Confidence 8753
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-10 Score=124.86 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=140.8
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF- 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~- 82 (817)
+.+..+...+...+|||||++||..+.+ ..|.+||+.+++. ..+... .+.+.+.+|+|||+. |+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----~~l~~~-~g~~~~~~~SpDG~~------la~ 259 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----EQITNF-EGLNGAPAWSPDGSK------LAF 259 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----EEccCC-CCCcCCeEECCCCCE------EEE
Confidence 4455566788999999999999886533 4689999988762 222222 344567899999986 66
Q ss_pred EeeCCC--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 83 SSSIDG--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 83 s~~~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+.+.++ .|.+||+.+++.. .+..+........|+||+.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~--------------------------------------- 299 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGR--------------------------------------- 299 (430)
T ss_pred EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCC---------------------------------------
Confidence 444444 6888999988754 3444555566788999984
Q ss_pred cccccccccCCEEEEEe-CCC--cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-C--cEEEEECCC
Q 003467 161 ELHEQSVVEDRRVALAC-DDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G--YIRSWDAKL 234 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g--~i~vwd~~~ 234 (817)
.++..+ .+| .|+++++.+++.... ...+ ......+|+|||++|+..+.+ + .|.+||+.+
T Consensus 300 -----------~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 300 -----------TLYFTSDRGGKPQIYKVNVNGGRAERV--TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred -----------EEEEEECCCCCceEEEEECCCCCEEEe--ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 343333 333 567777765543211 1122 233457899999999887653 2 588899988
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-CCC--cEEEEeCCCCeEEEEeecCccCeeEEEEecC
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
++. ..+.. ........|+||| .++..+ .+| .|.+++.. |...+.+..+.+.+...+|+|-
T Consensus 365 g~~-~~lt~---------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 365 GSV-RILTD---------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCE-EEccC---------CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 764 33331 1112245899999 343333 333 46677775 5555566656667777888763
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-09 Score=108.26 Aligned_cols=150 Identities=12% Similarity=0.084 Sum_probs=99.3
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
.=+.+.|||.|.| |+|--..| |.+|-=.+-..++.+. | ..|.-+.|||...++++-+..-..
T Consensus 212 Tetyv~wSP~GTY------L~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~--------- 273 (698)
T KOG2314|consen 212 TETYVRWSPKGTY------LVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPII--------- 273 (698)
T ss_pred eeeeEEecCCceE------EEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccc---------
Confidence 4467899999998 99988777 9999877766666665 3 457889999999765432110000
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG 221 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 221 (817)
.+.+ -++...++|||+.+|........+......-.-..||.|++++|--
T Consensus 274 -------------------------~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 274 -------------------------VEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred -------------------------cCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe
Confidence 0000 1234689999999887774333433333333457899999999988
Q ss_pred eCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEE
Q 003467 222 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 268 (817)
Q Consensus 222 ~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~ 268 (817)
..| .|.||+..+-..+..-. -.-..|....|+|.+.++
T Consensus 324 ~~~-sisIyEtpsf~lld~Ks--------lki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 324 TGN-SISIYETPSFMLLDKKS--------LKISGIRDFSWSPTSNLL 361 (698)
T ss_pred ccc-eEEEEecCceeeecccc--------cCCccccCcccCCCcceE
Confidence 776 89999976533322222 244567788899987544
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=9.4e-11 Score=117.61 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=123.1
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.++-|...|.|.+|+.. +.++.....-..|.+.|.++.++.+-..|.+++.|+.+..|+...++.+.... .
T Consensus 72 ~lvlgt~~g~v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--------~ 142 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--------E 142 (541)
T ss_pred EEEeecCCccEEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec--------c
Confidence 78889999999999997 44565445556899999999999999999999999999999999998888887 5
Q ss_pred CceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecC-----CCEEEEE-ccCCcEEEEEee
Q 003467 252 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-----HNRVFST-GSDGQVILYKAS 324 (817)
Q Consensus 252 ~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~~~-~~dg~i~iw~~~ 324 (817)
....+.+++.+||| .+++++ +.|++||+++++.+..|.+|.++|.+++|..+ |.+++++ ..+.-+.+|-..
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 77889999999999 677665 56999999999999999999999999999887 6666654 446677888776
Q ss_pred cc
Q 003467 325 CE 326 (817)
Q Consensus 325 ~~ 326 (817)
..
T Consensus 221 ~~ 222 (541)
T KOG4547|consen 221 KE 222 (541)
T ss_pred cc
Confidence 53
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.5e-10 Score=119.55 Aligned_cols=212 Identities=18% Similarity=0.171 Sum_probs=136.5
Q ss_pred cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---CeEEEEECCCCeEEEEEeecCceEE
Q 003467 36 SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIW 112 (817)
Q Consensus 36 ~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~i~ 112 (817)
.|.++|...+. .+.+..+ ...+...+|+|||+. |+..+.+ ..|.+||+.+++... +....+.+.
T Consensus 180 ~l~~~d~~g~~-----~~~l~~~-~~~~~~p~wSpDG~~------la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~ 246 (430)
T PRK00178 180 TLQRSDYDGAR-----AVTLLQS-REPILSPRWSPDGKR------IAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNG 246 (430)
T ss_pred EEEEECCCCCC-----ceEEecC-CCceeeeeECCCCCE------EEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcC
Confidence 47788887654 2333333 467899999999987 8776543 469999999887543 333344556
Q ss_pred EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE-EEeCCC--cEEEEEecC
Q 003467 113 QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA-LACDDG--CVRIYRITD 189 (817)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~ 189 (817)
..+|+|||. .|+ +...+| .|++||+.+
T Consensus 247 ~~~~SpDG~--------------------------------------------------~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 247 APAWSPDGS--------------------------------------------------KLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CeEECCCCC--------------------------------------------------EEEEEEccCCCceEEEEECCC
Confidence 789999995 443 344444 688888875
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CC--cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG- 265 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg--~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~- 265 (817)
+.. +.+..+........|+|||+.|+..+. +| .|.++|+.+++. ..+.. .........|+|||
T Consensus 277 ~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~--------~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 277 RQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTF--------VGNYNARPRLSADGK 343 (430)
T ss_pred CCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeec--------CCCCccceEECCCCC
Confidence 543 345556666777899999998877654 33 578888877764 33331 11223356899999
Q ss_pred eEEEEcC-CC--cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC-C--cEEEEEeec
Q 003467 266 TLVSADS-TG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-G--QVILYKASC 325 (817)
Q Consensus 266 ~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d-g--~i~iw~~~~ 325 (817)
.++.... ++ .|.+||+.+++. ..+.. ........|+|||+.++..+.+ + .+.++++..
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4444433 33 488899988764 33332 2223356899999998876543 3 355555543
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.8e-10 Score=119.90 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=131.4
Q ss_pred cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-C--CeEEEEECCCCeEEEEEeecCceEE
Q 003467 36 SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-D--GSVSEWDLYDLKQKIVLQSIDFSIW 112 (817)
Q Consensus 36 ~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d--~~i~vwd~~~~~~~~~~~~~~~~i~ 112 (817)
.|.++|..... ...+..+ ...+.+.+|||||+. |+..+. + ..|.+||+.+++.... ....+...
T Consensus 199 ~l~i~d~dG~~-----~~~l~~~-~~~~~~p~wSPDG~~------La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~ 265 (448)
T PRK04792 199 QLMIADYDGYN-----EQMLLRS-PEPLMSPAWSPDGRK------LAYVSFENRKAEIFVQDIYTQVREKV-TSFPGING 265 (448)
T ss_pred EEEEEeCCCCC-----ceEeecC-CCcccCceECCCCCE------EEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcC
Confidence 57777876654 2233333 567889999999987 776543 2 3689999988875432 22233345
Q ss_pred EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc--EEEEEecCC
Q 003467 113 QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC--VRIYRITDS 190 (817)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~ 190 (817)
..+|+|||.. .+++...+|. |+++|+.++
T Consensus 266 ~~~wSPDG~~-------------------------------------------------La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 266 APRFSPDGKK-------------------------------------------------LALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CeeECCCCCE-------------------------------------------------EEEEEeCCCCeEEEEEECCCC
Confidence 7899999953 2334555664 777777654
Q ss_pred CceeEeeccCCccceEEEEEEccCCCEEEEeeC-CC--cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e
Q 003467 191 DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T 266 (817)
Q Consensus 191 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg--~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 266 (817)
. . +.+..+.......+|+|||++|+..+. ++ .|.++|+.+++. ..+.. .........|+||| .
T Consensus 297 ~-~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~--------~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 297 A-L---TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTF--------EGEQNLGGSITPDGRS 363 (448)
T ss_pred C-e---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEec--------CCCCCcCeeECCCCCE
Confidence 3 3 445555566778999999998877654 33 577778877764 33431 11122346899999 4
Q ss_pred EEEE-cCCC--cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc-CCc--EEEEEee
Q 003467 267 LVSA-DSTG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQ--VILYKAS 324 (817)
Q Consensus 267 l~s~-~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~--i~iw~~~ 324 (817)
|+.. ..++ .|.++|+.+++. ..+.... ......|+|||+.|+..+. ++. +.+++..
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 4443 3344 356678887764 3333221 2234589999998876554 333 5555653
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.1e-09 Score=105.51 Aligned_cols=322 Identities=13% Similarity=0.187 Sum_probs=199.2
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC-----------
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS----------- 272 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~----------- 272 (817)
.-+-+.|||-|.||+|--.. -|.+|--.+-..++++. | ..|.-+.|||+. +|++-+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~---------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY---------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeeeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc---------C-CCceeeecCCccceEEEecCCccccCcccCC
Confidence 34668999999999998766 58899876666666664 3 347778999988 5766432
Q ss_pred CCcEEEEeCCCCeEEEEeecCcc--Ce-eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHKG--DV-NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 349 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~~--~v-~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (817)
...+.|||+.+|.+.+.+..... .+ .-..||.|++++|.-..+ .|.+|+..+.. ++...
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~-----------------lld~K 342 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFM-----------------LLDKK 342 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCcee-----------------eeccc
Confidence 25699999999999888876322 22 346899999999987665 78999877644 34444
Q ss_pred ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCC
Q 003467 350 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 429 (817)
Q Consensus 350 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~ 429 (817)
...-..|+...|+ |.+. +| ..|-..+.....
T Consensus 343 slki~gIr~Fsws---------P~~~------------------------ll---------AYwtpe~~~~pa------- 373 (698)
T KOG2314|consen 343 SLKISGIRDFSWS---------PTSN------------------------LL---------AYWTPETNNIPA------- 373 (698)
T ss_pred ccCCccccCcccC---------CCcc------------------------eE---------EEEcccccCCcc-------
Confidence 4455567777776 4432 32 334333221000
Q ss_pred CCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeE--EEEecCCCcEEE
Q 003467 430 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFA 507 (817)
Q Consensus 430 ~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~la 507 (817)
.+.+..+.... ++....-.++. .+-|-.+|.+|+
T Consensus 374 --------------------------rvtL~evPs~~------------------~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 374 --------------------------RVTLMEVPSKR------------------EIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred --------------------------eEEEEecCccc------------------eeeeccceeeeccEEEeccCCcEEE
Confidence 01111111000 00000001111 233455666666
Q ss_pred EEcC-----------CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec---CCcEEEEEccCC-
Q 003467 508 YSDH-----------VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYVVDVSSS- 572 (817)
Q Consensus 508 ~~~~-----------~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~---dg~i~v~d~~~~- 572 (817)
+--+ ..+.||++...+-... ...+. ..+...+|-|.|+.+++.+. ..++.+|.+++.
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve-----~velk---e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-----VVELK---ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCce-----eeecc---hheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 6321 2344555543111111 12222 26888999999999887654 357889988732
Q ss_pred ---ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe---CCCcEEEEECCCcceEEEEecCCCCCeEEEEecC
Q 003467 573 ---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 573 ---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
+++..|. ....+.+.|||.|++++++. ..|.+..+|++-......- .......+.+.|.|
T Consensus 482 ~~~~lVk~~d-------------k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh~~at~veWDP 547 (698)
T KOG2314|consen 482 KKPSLVKELD-------------KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEHFAATEVEWDP 547 (698)
T ss_pred Cchhhhhhhc-------------ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-CccccccccceECC
Confidence 3344443 34567899999999998874 5688999998853322221 22224678899999
Q ss_pred CCCCeEEEEec------CCeEEEEEcCCCcc
Q 003467 647 QNNNVLIITTS------SNQVYVFDVEAKQL 671 (817)
Q Consensus 647 ~d~~~l~~~~~------d~~i~vwd~~~~~~ 671 (817)
.|++++++++ |+-.++|++.+..+
T Consensus 548 -tGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 548 -TGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred -CCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 9999998865 56688898887764
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=8.6e-09 Score=102.52 Aligned_cols=236 Identities=10% Similarity=0.104 Sum_probs=140.5
Q ss_pred CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEe----CCeEEEEEecccCCcccCCCCCCCCccc
Q 003467 406 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY----SCRLDILSVRLENNVESRSSSGGHASTS 481 (817)
Q Consensus 406 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~~i~i~~~~~~~~~~~~~~~~g~~~~~ 481 (817)
.+..|.+||..+.+..........|..........+++++||+++... .+.+.+.++...+
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--------------- 139 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--------------- 139 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------------
Confidence 588999999999887766554444333333444578899999877643 3478888887654
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC-Cc-cccceeEEEEec-CCCEEEEE
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PR-KLQFAHSMIFSY-DSSQLIIA 558 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~fsp-d~~~l~~~ 558 (817)
.+.++..+....+.. +.+..+.+.+.|+......+.. .+... .....+ .. ...-...-.|++ ||+++.+.
T Consensus 140 vv~ei~vp~~~~vy~---t~e~~~~~~~~Dg~~~~v~~d~--~g~~~--~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 140 FVRMMDVPDCYHIFP---TANDTFFMHCRDGSLAKVGYGT--KGNPK--IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EEEEEeCCCCcEEEE---ecCCccEEEeecCceEEEEecC--CCceE--EeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 445555543222221 1222222333344433333332 11110 111111 00 000000015567 88888776
Q ss_pred ecCCcEEEEEccCC-----ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe----------CCCcEEEEECC
Q 003467 559 GHDRRIYVVDVSSS-----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----------CFGDVYIFNLE 623 (817)
Q Consensus 559 ~~dg~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~----------~dg~i~vwd~~ 623 (817)
.+ |+|++.|+... +....+... ..+-.-..+.+.-++++|||+.|.++. ..+.|.++|..
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~----~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEA----EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeecccc----ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 66 99999996433 222222210 000001223344499999999988853 22479999999
Q ss_pred CcceEEEEecCCCCCeEEEEecCCCCC-eEEEEe-cCCeEEEEEcCCCcc
Q 003467 624 IQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 671 (817)
Q Consensus 624 ~~~~~~~~~~~~~~~i~~l~~sp~d~~-~l~~~~-~d~~i~vwd~~~~~~ 671 (817)
+++....++..+ .+..++++| |++ +|+++. .++.|.++|+.+++.
T Consensus 288 t~kvi~~i~vG~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 288 TGKRLRKIELGH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCeEEEEEeCCC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999988887654 899999999 888 777776 578899999999875
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.5e-10 Score=116.58 Aligned_cols=178 Identities=18% Similarity=0.251 Sum_probs=112.2
Q ss_pred CeEEEEecCCCcEEEEEcC--C--ceEE--EEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec-CCc--
Q 003467 493 KIICSTISNSGMLFAYSDH--V--KPSL--FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRR-- 563 (817)
Q Consensus 493 ~i~~~~~s~~g~~la~~~~--~--~i~l--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-dg~-- 563 (817)
.....+|||||+.|++..+ + .+.+ |++.....+ ... .............+|||||+.|+..+. +|.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g-~~~----~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ 306 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG-KPR----RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPR 306 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC-cce----EeecCCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence 3446789999999888542 3 3333 344321111 110 111112223456799999999887764 564
Q ss_pred EEEEEccC-CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCCe
Q 003467 564 IYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 564 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
|+++++.. +.....+.. +...+....|||||++|+....+ ..|++||+++++..... .. ...+
T Consensus 307 ly~~~~~~~g~~~~~lt~-----------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~-~~~~ 373 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTK-----------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TS-PENK 373 (428)
T ss_pred EEEEECcccccceEEecc-----------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CC-CCCc
Confidence 44445432 222333433 34567788999999999887643 36999999998865433 22 2356
Q ss_pred EEEEecCCCCCeEEEEec---CCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCC
Q 003467 640 TAAGFPPQNNNVLIITTS---SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~~---d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~ 701 (817)
....|+| |++.|+.... ...|+++|+++++. ..+....+.+...+|+|.
T Consensus 374 ~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~------------~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 374 ESPSWAI-DSLHLVYSAGNSNESELYLISLITKKT------------RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred cceEECC-CCCEEEEEECCCCCceEEEEECCCCCE------------EEeecCCCcccCceecCC
Confidence 7889999 9988876543 34799999988874 234445566778889885
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=5e-10 Score=100.71 Aligned_cols=248 Identities=12% Similarity=0.011 Sum_probs=171.1
Q ss_pred EEEEECC-----CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 17 VALATSA-----DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 17 ~~la~sp-----dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
+.|.|-| .-.+||.|+..|...+|...+.+. .......+ ...|+-+.=.-|.+ .++..++.|.+++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~---h~~~cd~s-nn~v~~~~r~cd~~-----~~~~i~sndht~k 141 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG---HLYQCDVS-NNDVTLVKRYCDLK-----FPLNIASNDHTGK 141 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccc---ceeeeccc-ccchhhhhhhcccc-----cceeeccCCccee
Confidence 3456666 345899999999999999987653 22222222 33333322222332 2488888999999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+.+++.+.....+.-..-.+.++++++|+ +
T Consensus 142 ~~~~~~~s~~~~~h~~~~~~ns~~~snd~--------------------------------------------------~ 171 (344)
T KOG4532|consen 142 TMVVSGDSNKFAVHNQNLTQNSLHYSNDP--------------------------------------------------S 171 (344)
T ss_pred EEEEecCcccceeeccccceeeeEEcCCC--------------------------------------------------c
Confidence 99887665444433222347889999998 4
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.+++.++...|..|.+....+..........+..-.+..|+.....+|++..||++.|||++........... ....
T Consensus 172 ~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss---trp~ 248 (344)
T KOG4532|consen 172 WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS---TRPH 248 (344)
T ss_pred eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc---cCCC
Confidence 8888999999999999855444332244455566778999999999999999999999999876655444322 2235
Q ss_pred CceeEEEeEEecCC---eEEEEcCCCcEEEEeCCCCeEEEEeec-------C-ccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 252 PELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSF-------H-KGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 252 ~~~~v~~v~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h-~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
|.+.+..+.|++-| .|...-.-+.+.+.|++++...+.+.. | +..|..-.|+.++..+.+...+ .+.-
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae 327 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAE 327 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhhe
Confidence 88999999999877 455555567899999998876655422 2 2447888888888888877665 4566
Q ss_pred EEeeccc
Q 003467 321 YKASCES 327 (817)
Q Consensus 321 w~~~~~~ 327 (817)
|++....
T Consensus 328 ~ni~srs 334 (344)
T KOG4532|consen 328 YNILSRS 334 (344)
T ss_pred eeccccc
Confidence 6665543
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=4.4e-09 Score=110.57 Aligned_cols=305 Identities=15% Similarity=0.159 Sum_probs=179.7
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+..+++++.+|.|+-+|..+++.+-.. .+.. .....++ .++..++.++.+|.+..+|..+|+.+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~-~~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------ 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV-DLDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL------ 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee-cCCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc------
Confidence 458889999999999998877665221 2221 1111222 2467888899999999999999999887753
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCe-----eEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV-----NALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
...+.+.....++.++.++.+|.|..||.++|+.+..+......+ .+..+. + ..++.+..++.+..+|..
T Consensus 134 ---~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 134 ---SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred ---CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEcc
Confidence 122222222236678888889999999999999988776433221 112222 2 467888888999999988
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeE-eecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
+++ ..|........-...+..+. +. ..|- -.+..++.
T Consensus 209 tG~-------------~~W~~~~~~~~g~~~~~~~~~~~-------~~p~----------------------~~~~~vy~ 246 (377)
T TIGR03300 209 TGQ-------------PLWEQRVALPKGRTELERLVDVD-------GDPV----------------------VDGGQVYA 246 (377)
T ss_pred CCC-------------EeeeeccccCCCCCchhhhhccC-------CccE----------------------EECCEEEE
Confidence 876 23321110000000000000 00 0000 01136777
Q ss_pred ecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCcccee
Q 003467 404 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 483 (817)
Q Consensus 404 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~ 483 (817)
++.+|.++.+|..+.+ .+|......
T Consensus 247 ~~~~g~l~a~d~~tG~--------------------------------------~~W~~~~~~----------------- 271 (377)
T TIGR03300 247 VSYQGRVAALDLRSGR--------------------------------------VLWKRDASS----------------- 271 (377)
T ss_pred EEcCCEEEEEECCCCc--------------------------------------EEEeeccCC-----------------
Confidence 7888899998886533 223322100
Q ss_pred eeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCc
Q 003467 484 VQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 563 (817)
Q Consensus 484 ~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~ 563 (817)
....++ .++..++...++.+..++... +..+|.... +... ....... .+..|++++.+|.
T Consensus 272 ----------~~~p~~-~~~~vyv~~~~G~l~~~d~~t---G~~~W~~~~--~~~~--~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 272 ----------YQGPAV-DDNRLYVTDADGVVVALDRRS---GSELWKNDE--LKYR--QLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred ----------ccCceE-eCCEEEEECCCCeEEEEECCC---CcEEEcccc--ccCC--ccccCEE--ECCEEEEEeCCCE
Confidence 001111 133444445667777777754 556665422 1111 1112222 4678899999999
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCce-eEEEEccCCCEEEEEeCCCcEEEE
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPI-TKMFTSSDGQWLAAVNCFGDVYIF 620 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~s~dg~~la~~~~dg~i~vw 620 (817)
|+++|..+|+.+.+++. +...+ .+.++ .++ .|+.++.||.|+.|
T Consensus 332 l~~~d~~tG~~~~~~~~-----------~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKT-----------DGSGIASPPVV-VGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEc-----------CCCccccCCEE-ECC-EEEEEeCCceEEEe
Confidence 99999999999988875 33322 22333 233 58888899988765
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.1e-09 Score=99.38 Aligned_cols=258 Identities=12% Similarity=0.144 Sum_probs=169.1
Q ss_pred cCCCceEEEEECCCCCeEEEEec---CCcEEEEecCC--CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 11 WKPSPVVALATSADDSQVAAARE---DGSLEIWLVSP--GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~---dg~i~iwd~~~--~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.+.+..+-|+|+|++++|.++-. +|.|.-|.+.. |+....-...+.|+ .-..++++++|++ |+++.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---~p~yvsvd~~g~~------vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS---PPCYVSVDEDGRF------VFVAN 107 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC---CCeEEEECCCCCE------EEEEE
Confidence 34577889999999999988743 57788887775 55322222333443 3389999999998 99887
Q ss_pred C-CCeEEEEECCC-CeEEEE--EeecCce----------EEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 86 I-DGSVSEWDLYD-LKQKIV--LQSIDFS----------IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 86 ~-d~~i~vwd~~~-~~~~~~--~~~~~~~----------i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
. .|.|.++-++. |..... +..|.+. +.+..+.|++.
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~------------------------------ 157 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR------------------------------ 157 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC------------------------------
Confidence 6 48899999865 543322 2234444 77788888883
Q ss_pred ccCCCCCCccccccccccCCEEEEE-eCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEE
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALA-CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRS 229 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~v 229 (817)
+|++. -..-.|.+|++..+.........-.-...-+.|+|+|++++....++ +++|.+
T Consensus 158 --------------------~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 158 --------------------YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred --------------------EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 44443 23457899999854433222222244456789999999999888776 889999
Q ss_pred EECCCC-ceEEEEEeec-CCCCCCCceeEEEeEEecCCeEEEEcCCC--cEEEEeCCC--CeE--EEEeecCccCeeEEE
Q 003467 230 WDAKLG-YEIYRITVGL-GGLGSGPELCIWSLLSLRCGTLVSADSTG--SVQFWDSRH--GTL--LQAHSFHKGDVNALA 301 (817)
Q Consensus 230 wd~~~g-~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~l~s~~~dg--~i~iwd~~~--~~~--~~~~~~h~~~v~~l~ 301 (817)
|..... ..+..++... -+..-.......++..++||+++-++..| .|.++.+.. +++ +.....+...-....
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 998763 2333332211 11112345567788899999766665544 477776553 332 233334445578899
Q ss_pred EecCCCEEEEEcc-CCcEEEEEeeccc
Q 003467 302 AAPSHNRVFSTGS-DGQVILYKASCES 327 (817)
Q Consensus 302 ~s~~~~~l~~~~~-dg~i~iw~~~~~~ 327 (817)
|++.+++|+++.. +..|.+|..+...
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 9999999999877 4468888876543
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.7e-08 Score=95.97 Aligned_cols=274 Identities=14% Similarity=0.154 Sum_probs=176.1
Q ss_pred CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---CCeEEEEECCC--CeEEE--EEee
Q 003467 34 DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---DGSVSEWDLYD--LKQKI--VLQS 106 (817)
Q Consensus 34 dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d~~i~vwd~~~--~~~~~--~~~~ 106 (817)
+.-|.+|++.+.+-....... ....+.++-|+|+|+++. |.++.. +|.|.-+.++. |+... ....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~--v~~~~nptyl~~~~~~~~------LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL--VAELGNPTYLAVNPDQRH------LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhh--ccccCCCceEEECCCCCE------EEEEEecCCcCcEEEEEEcCCCCeEEEeecccc
Confidence 456999999843311111111 122578999999999987 888755 46677776654 55432 2222
Q ss_pred cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-CCCcEEEE
Q 003467 107 IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-DDGCVRIY 185 (817)
Q Consensus 107 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iw 185 (817)
.+.+-..+++++++. +|+++. ..|.|.++
T Consensus 87 ~g~~p~yvsvd~~g~--------------------------------------------------~vf~AnY~~g~v~v~ 116 (346)
T COG2706 87 PGSPPCYVSVDEDGR--------------------------------------------------FVFVANYHSGSVSVY 116 (346)
T ss_pred CCCCCeEEEECCCCC--------------------------------------------------EEEEEEccCceEEEE
Confidence 334447889999884 555554 46899999
Q ss_pred EecCCCceeEeeccCCccce----------EEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 186 RITDSDELIYHRSLPRVSGR----------VLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 186 d~~~~~~~~~~~~~~~h~~~----------v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
-+.....+........|.+. +.+..+.|++++|++.+- | .|.+|++..|.....-.... ...
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v-----~~G 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV-----KPG 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc-----CCC
Confidence 98754444332233344444 888999999999998754 5 89999999776554333211 234
Q ss_pred eeEEEeEEecCCe--EEEEcCCCcEEEEeCCCC-e---EEEEeec------CccCeeEEEEecCCCEEEEEcc-CCcEEE
Q 003467 254 LCIWSLLSLRCGT--LVSADSTGSVQFWDSRHG-T---LLQAHSF------HKGDVNALAAAPSHNRVFSTGS-DGQVIL 320 (817)
Q Consensus 254 ~~v~~v~~~~~~~--l~s~~~dg~i~iwd~~~~-~---~~~~~~~------h~~~v~~l~~s~~~~~l~~~~~-dg~i~i 320 (817)
..-..|.|+|++. .+..--+++|-+|..... . .++.+.. ......++.+++||++|+++-. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 4567899999994 456667899999998863 2 2333221 1345678899999999998754 347888
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
|.+.... .+...+.....+...-+...++ +.++ +
T Consensus 271 f~V~~~~-------------g~L~~~~~~~teg~~PR~F~i~---------~~g~------------------------~ 304 (346)
T COG2706 271 FSVDPDG-------------GKLELVGITPTEGQFPRDFNIN---------PSGR------------------------F 304 (346)
T ss_pred EEEcCCC-------------CEEEEEEEeccCCcCCccceeC---------CCCC------------------------E
Confidence 8876543 1222444444454545666665 5554 7
Q ss_pred EEEecCCC-eEEEEeCCc
Q 003467 401 LISAGDDT-KLFAYCANE 417 (817)
Q Consensus 401 l~s~~~dg-~i~~~~~~~ 417 (817)
|+.+..++ .|.+|..+.
T Consensus 305 Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 305 LIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEccCCCcEEEEEEcC
Confidence 77776654 777877654
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=133.61 Aligned_cols=224 Identities=18% Similarity=0.237 Sum_probs=166.3
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
-+-..|.+|.=+|...+.++|+.||.|++|....++. +..........|+.+.|+..|.. ...+..||.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----v~~~rt~g~s~vtr~~f~~qGnk------~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----VVCFRTAGNSRVTRSRFNHQGNK------FGIVDGDGDL 2275 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----EEEeeccCcchhhhhhhcccCCc------eeeeccCCce
Confidence 3345667777777788889999999999999988773 33333222489999999999987 7888889999
Q ss_pred EEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 91 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
.+|... .++....++|........|-..
T Consensus 2276 ~l~q~~-pk~~~s~qchnk~~~Df~Fi~s--------------------------------------------------- 2303 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSWQCHNKALSDFRFIGS--------------------------------------------------- 2303 (2439)
T ss_pred eecccC-CcceeccccCCccccceeeeeh---------------------------------------------------
Confidence 999987 5667777888887777777652
Q ss_pred CEEEEE---eCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCC
Q 003467 171 RRVALA---CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 247 (817)
Q Consensus 171 ~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~ 247 (817)
.++++ ++++.+.+||..-.....+.. ..|.+.++++++-|..+.|++|+.+|.|++||++..+.++.+..
T Consensus 2304 -~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---- 2376 (2439)
T KOG1064|consen 2304 -LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---- 2376 (2439)
T ss_pred -hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----
Confidence 44444 357899999986333333333 78999999999999999999999999999999988777766651
Q ss_pred CCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec---CccC---e-eEEEEecCCCEEEEEccCCc
Q 003467 248 LGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF---HKGD---V-NALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 248 ~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~---v-~~l~~s~~~~~l~~~~~dg~ 317 (817)
+....++++|+..|.++||++.....+.++.. |.+- + ..+-.. ..++|++++.||+
T Consensus 2377 -------------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 -------------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred -------------hhhhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 22334899999999999999998877777653 1111 0 122222 2356777777763
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1e-09 Score=110.34 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=140.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc------c--------------CCCEEEEeeCCCcEEEE
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS------A--------------DGNMLYSGSSDGYIRSW 230 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s------~--------------dg~~l~s~~~dg~i~vw 230 (817)
.++|....||.++||+...++..........-++..++..|. | |...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 489999999999999998665543323333334455555552 2 34577888889999999
Q ss_pred ECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEE
Q 003467 231 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV 309 (817)
Q Consensus 231 d~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 309 (817)
++..|+...++..+ .|...|.++.+..+- .|.+++.|+.+..|+...++.++.++.....+.+++++|||..+
T Consensus 86 s~~~g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 86 SVAGGEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EecCCeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999999998853 788999999887665 79999999999999999999999999999999999999999999
Q ss_pred EEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 310 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
++++ ++|.+|++++.+ .+..+.+|.+.|+++.|.
T Consensus 160 ~~as--~~ik~~~~~~ke-----------------vv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKE-----------------VVITFTGHGSPVRTLSFT 193 (541)
T ss_pred Eecc--ceEEEEEccCce-----------------EEEEecCCCcceEEEEEE
Confidence 9885 579999999998 899999999999999997
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=4.3e-10 Score=115.12 Aligned_cols=307 Identities=15% Similarity=0.142 Sum_probs=201.8
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
+++.++.++|.|+-+|.|+.-| +.|-|+...-..+...+.+. .-.|-.+.|+|.... .+-++......-.+|
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t---pw~vad~qws~h~a~----~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT---PWQVADVQWSPHPAK----PYWIVSTSNQKAIIW 96 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC---cchhcceecccCCCC----ceeEEecCcchhhhh
Confidence 6788999999999999998877 55666654322222222222 335778899998665 445555555567899
Q ss_pred ECCC---CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 94 DLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 94 d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
++.. ...-..+.+|+..|..+.|+|...
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~p------------------------------------------------- 127 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHP------------------------------------------------- 127 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCC-------------------------------------------------
Confidence 9853 344567889999999999999874
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce-EEEEEeecCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-IYRITVGLGGLG 249 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~-~~~~~~~~~~~~ 249 (817)
..+++++.|-.+..||+....... .........-..|+|+-....+.+.+....|++||.+.|.. +..+.
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K------- 198 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK------- 198 (1081)
T ss_pred cceeeccccccceeeeccCCCcce--eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-------
Confidence 389999999999999998655443 33444445667899987666666667777999999998764 44444
Q ss_pred CCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEE-eecCccCeeEEEEecCCCEEEE--EccCCcEEEEEee
Q 003467 250 SGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSHNRVFS--TGSDGQVILYKAS 324 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~~--~~~dg~i~iw~~~ 324 (817)
+|-..|+.+.|..-- .+.+.+.||+|++||......-.. ......+|..-++-|-|.-.+. .-.+..+.+++.+
T Consensus 199 -~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 199 -GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred -ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecccc
Confidence 688889999887543 799999999999999875432211 1123456666677775543322 1122244444443
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
..... ......-+.+..+.+|+..|....|.. +.++....+.. .-.|++-
T Consensus 278 n~d~e-------~n~~~~~~pVh~F~GH~D~V~eFlWR~-----------------r~e~~~d~d~r------dfQLVTW 327 (1081)
T KOG0309|consen 278 NSDLE-------WNVFDLNTPVHTFVGHDDVVLEFLWRK-----------------RKECDGDYDSR------DFQLVTW 327 (1081)
T ss_pred chhhh-------hccccCCcceeeecCcchHHHHHhhhh-----------------cccccCCCCcc------ceeEEEe
Confidence 32210 000111226788899998887776631 00111111100 1279999
Q ss_pred cCCCeEEEEeCCc
Q 003467 405 GDDTKLFAYCANE 417 (817)
Q Consensus 405 ~~dg~i~~~~~~~ 417 (817)
+.|..+++|.+..
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999999875
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.1e-10 Score=113.20 Aligned_cols=249 Identities=16% Similarity=0.212 Sum_probs=177.8
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC---CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS---GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
|...|.+|...|++++--.+.+-+++++.|.+|++|.+...-. ...|+.++..| +.+|.++-|-.+-++ +
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~lr~------i 799 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADLRS------I 799 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeeccce------e
Confidence 5556789999999999888888899999999999999874322 23478889888 799999999998776 6
Q ss_pred EEeeCCCeEEEEECCCCeEEEEEe-----ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 82 FSSSIDGSVSEWDLYDLKQKIVLQ-----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
+++ ||-|.+||.--|+++..+. +-++.|.|+ ++-..
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~---------------------------------- 840 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDR---------------------------------- 840 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEec---ccCcc----------------------------------
Confidence 654 7889999988777665332 112333332 22110
Q ss_pred CCCccccccccccCC-EEEEEeCCCcEEEEEecCCCceeEeecc--CCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 157 SDSDELHEQSVVEDR-RVALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
. .+|.++...+|+++|....+.....+.. .+..+.+.+++..+.|++++.+-++|+|.+.|.+
T Consensus 841 --------------~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 841 --------------HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred --------------hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence 1 3444467899999999865544333333 4556789999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEE-EeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQF-WDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
+|+.+.... ..+.....++...|..++....|.++.+ |..-.|....+.+....+...+. .-|..|+++
T Consensus 907 ~G~vINswr--------pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a 976 (1034)
T KOG4190|consen 907 NGKVINSWR--------PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTA 976 (1034)
T ss_pred CCceeccCC--------cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEe
Confidence 999887765 4555555566555667888888999998 98887877666554332222111 124557777
Q ss_pred ccCCcEEEEEe
Q 003467 313 GSDGQVILYKA 323 (817)
Q Consensus 313 ~~dg~i~iw~~ 323 (817)
.....+.+|.-
T Consensus 977 ~~Gn~lgVYad 987 (1034)
T KOG4190|consen 977 QNGNILGVYAD 987 (1034)
T ss_pred ccCcEEEEEec
Confidence 66666777753
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=4.4e-09 Score=96.18 Aligned_cols=234 Identities=17% Similarity=0.218 Sum_probs=160.2
Q ss_pred CCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCC--Cc---EEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC
Q 003467 24 DDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPK--SR---ISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD 97 (817)
Q Consensus 24 dg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~--~~---V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 97 (817)
+|. .|+.+-..|.|.++....... ...+.+-.. -. -.++.|++.+.. ++++-.+|.+.+-+...
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~s----s~~L~~ls~~ki~~~~~lslD~~~~~~~------i~vs~s~G~~~~v~~t~ 152 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDES----SVHLRGLSSKKISVVEALSLDISTSGTK------IFVSDSRGSISGVYETE 152 (339)
T ss_pred CccceeeeccccceEEEEeecccee----eeeecccchhhhhheeeeEEEeeccCce------EEEEcCCCcEEEEecce
Confidence 444 566777889999987764432 222322211 11 236678888876 99999999999777665
Q ss_pred CeEE--EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 98 LKQK--IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 98 ~~~~--~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
+... +..+.|..++|...|+-..+ +.+.+
T Consensus 153 ~~le~vq~wk~He~E~Wta~f~~~~p-------------------------------------------------nlvyt 183 (339)
T KOG0280|consen 153 MVLEKVQTWKVHEFEAWTAKFSDKEP-------------------------------------------------NLVYT 183 (339)
T ss_pred eeeeecccccccceeeeeeecccCCC-------------------------------------------------ceEEe
Confidence 5544 48889999999999987764 38999
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCc
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~ 253 (817)
|++|+.+..||++..+... .+..+.|...|.++.-+| .+.+|+||+.|-.|++||.++ ++.+..-. ..
T Consensus 184 GgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---------v~ 253 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---------VG 253 (339)
T ss_pred cCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---------cc
Confidence 9999999999998443322 244567888999998876 467999999999999999984 55554443 45
Q ss_pred eeEEEeEEecCC--eEEEEcCCCcEEEEeCCCC--e---EEEEeecCccCeeEEEEecCCCEEEEEcc-CCcEE-EEEee
Q 003467 254 LCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG--T---LLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVI-LYKAS 324 (817)
Q Consensus 254 ~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~-iw~~~ 324 (817)
+.||.+..+|.- .++.++.-.-.+|-+.+.+ + .....+.|.+-+..-.|......|++++. |+.++ +|-..
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 889999999865 3444444344566665542 2 34455667666666666444456777654 77655 67554
Q ss_pred cc
Q 003467 325 CE 326 (817)
Q Consensus 325 ~~ 326 (817)
++
T Consensus 334 t~ 335 (339)
T KOG0280|consen 334 TG 335 (339)
T ss_pred cC
Confidence 43
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3.2e-10 Score=112.03 Aligned_cols=192 Identities=20% Similarity=0.231 Sum_probs=142.3
Q ss_pred ccCCEEEEEeCCCcEEEEEecC-CCce---eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 168 VEDRRVALACDDGCVRIYRITD-SDEL---IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~-~~~~---~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.+.+.+++++.|.+|++|.+.. +... ....+...|+.+|.++.|-.+-++++++ ||-|.+||.--|+.+..+..
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 3346899999999999999972 2222 1346788999999999999998888876 78999999988887765542
Q ss_pred ecCCCCCCCceeEEEeEEecC--C-eEEE-EcCCCcEEEEeCCCCeEEEEee-----cCccCeeEEEEecCCCEEEEEcc
Q 003467 244 GLGGLGSGPELCIWSLLSLRC--G-TLVS-ADSTGSVQFWDSRHGTLLQAHS-----FHKGDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~--~-~l~s-~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~~~~~ 314 (817)
. ..++.+..+...++ . .+++ ++...+|+++|.+.+.....++ +..+-+.+++..+.|+.++++-.
T Consensus 823 a------pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS 896 (1034)
T KOG4190|consen 823 A------PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS 896 (1034)
T ss_pred C------cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc
Confidence 2 23333334444443 2 3444 4678899999999887766554 34567899999999999999999
Q ss_pred CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 315 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
.|.|.+.|.+++. .+...+....+...++- |..+
T Consensus 897 nGci~~LDaR~G~-----------------vINswrpmecdllqlaa----------psdq------------------- 930 (1034)
T KOG4190|consen 897 NGCIAILDARNGK-----------------VINSWRPMECDLLQLAA----------PSDQ------------------- 930 (1034)
T ss_pred CCcEEEEecCCCc-----------------eeccCCcccchhhhhcC----------chhH-------------------
Confidence 9999999999988 56666666666666665 4443
Q ss_pred cCCCcEEEEecCCCeEEE-EeCCcc
Q 003467 395 HLGVPMLISAGDDTKLFA-YCANEF 418 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~-~~~~~~ 418 (817)
.|+....|..+.+ |....+
T Consensus 931 -----~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 931 -----ALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred -----HHHhhcccceeEeeehhcCC
Confidence 7777777888877 765543
No 281
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=1.7e-07 Score=98.79 Aligned_cols=323 Identities=15% Similarity=0.196 Sum_probs=182.7
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEEEeecCC-CCCCC-ceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 215 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG-LGSGP-ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~-~~~~~-~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
+..+++++.+|.|.-+|..+|+.+.+....... ..... ...+.+-....++.++.++.+|.+..+|.++|+.+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 567888888999999999999998887642100 00000 0011111112356788888999999999999999888765
Q ss_pred CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCC
Q 003467 293 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 372 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 372 (817)
.........+. +..++++..++.+..+|..+++ ..|......... ..... .+ |
T Consensus 149 ~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~-------------~~W~~~~~~~~~--~~~~~-~s---------P 201 (394)
T PRK11138 149 AGEALSRPVVS--DGLVLVHTSNGMLQALNESDGA-------------VKWTVNLDVPSL--TLRGE-SA---------P 201 (394)
T ss_pred CCceecCCEEE--CCEEEEECCCCEEEEEEccCCC-------------EeeeecCCCCcc--cccCC-CC---------C
Confidence 43222222222 4467778889999999999887 334322110000 00000 00 1
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
-- ....++.++.++.+..+|..+.+..
T Consensus 202 ~v----------------------~~~~v~~~~~~g~v~a~d~~~G~~~------------------------------- 228 (394)
T PRK11138 202 AT----------------------AFGGAIVGGDNGRVSAVLMEQGQLI------------------------------- 228 (394)
T ss_pred EE----------------------ECCEEEEEcCCCEEEEEEccCChhh-------------------------------
Confidence 00 0125666778888888887764421
Q ss_pred eCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEe
Q 003467 453 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 453 ~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
|........ +.. .+.++.......+ + .++..++.+.++.+..++... +..+|...
T Consensus 229 -------W~~~~~~~~-------~~~---~~~~~~~~~~sP~----v-~~~~vy~~~~~g~l~ald~~t---G~~~W~~~ 283 (394)
T PRK11138 229 -------WQQRISQPT-------GAT---EIDRLVDVDTTPV----V-VGGVVYALAYNGNLVALDLRS---GQIVWKRE 283 (394)
T ss_pred -------heeccccCC-------Ccc---chhcccccCCCcE----E-ECCEEEEEEcCCeEEEEECCC---CCEEEeec
Confidence 221111000 000 0000000000001 1 144555556677777666654 66777643
Q ss_pred eecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe
Q 003467 533 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 612 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 612 (817)
+.. ...+. .++..|++++.+|.++.+|..+|+.+-..... ......+..+ .+.+|+.++
T Consensus 284 ---~~~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 284 ---YGS----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------LHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred ---CCC----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc----------CCCcccCCEE--ECCEEEEEe
Confidence 111 11122 35677888889999999999999876544320 0111222222 355788899
Q ss_pred CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 613 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 613 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
.+|.|+++|.++++..+..............+. + ..|++++.||.|+.+++
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 999999999999998887754322112222332 3 47889999999988865
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=9.7e-08 Score=88.09 Aligned_cols=239 Identities=14% Similarity=0.169 Sum_probs=140.8
Q ss_pred EEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC
Q 003467 19 LATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL 98 (817)
Q Consensus 19 la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 98 (817)
++.+.||+.||+-. |..|+|-.....-.........+....-.-+-++||||+.+ ||.+...|+|+++|+...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl------La~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL------LAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE------EEEEcCCCeEEEEecccc
Confidence 68899999999865 67899987654321111112234443456789999999998 999999999999998763
Q ss_pred eEEEEEee-------cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 99 KQKIVLQS-------IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 99 ~~~~~~~~-------~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+ +..+.. ....|-.|.|.+..... -| ..
T Consensus 76 ~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~-------------~w-------------------------------s~ 110 (282)
T PF15492_consen 76 E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSA-------------QW-------------------------------SY 110 (282)
T ss_pred e-eEEcCcccccCCccccceeeeEeecccccc-------------cc-------------------------------ce
Confidence 3 333321 11334444444332100 00 02
Q ss_pred EEEEEeCCCcEEEEEecC--CCceeEeec--cC-CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 172 RVALACDDGCVRIYRITD--SDELIYHRS--LP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~--~~-~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.|.+-..+|.++-|-+.. .+......+ +. .+...|.++.|+|.-++|+.|+.... +++. .+
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~------ 176 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SK------ 176 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--cc------
Confidence 566666778888877642 233322233 33 34779999999999888877764311 0000 00
Q ss_pred CCCCCCceeEEEeEEecCC---eEEEEcCCCc------EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc
Q 003467 247 GLGSGPELCIWSLLSLRCG---TLVSADSTGS------VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~---~l~s~~~dg~------i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
.....+.+-....+. ..+....++. -.+|.+-+.+...........|..|..||||+.|++...+|.
T Consensus 177 ----a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 177 ----ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ----ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 111222222222222 2222222221 234444333332222334678999999999999999999999
Q ss_pred EEEEEeeccc
Q 003467 318 VILYKASCES 327 (817)
Q Consensus 318 i~iw~~~~~~ 327 (817)
|.+|++.+-.
T Consensus 253 lsLW~iPsL~ 262 (282)
T PF15492_consen 253 LSLWEIPSLR 262 (282)
T ss_pred EEEEecCcch
Confidence 9999998865
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=4.4e-09 Score=96.66 Aligned_cols=178 Identities=12% Similarity=0.162 Sum_probs=120.2
Q ss_pred cCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCC-CEEEEEecCCcEEEE
Q 003467 489 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVV 567 (817)
Q Consensus 489 ~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~-~~l~~~~~dg~i~v~ 567 (817)
.+...|.++++..|.+.+..+++-.|.+|+++..+..-.+.+++...+.....-|++..|+|.. ..+...+..|+|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 3456788999999999999999999999999986666666555554444444578899999954 455666778999999
Q ss_pred EccCCcee----eeeccCcc-cccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce-EEEEecC-------
Q 003467 568 DVSSSELL----HTFTPCRE-EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ-HWFISRL------- 634 (817)
Q Consensus 568 d~~~~~~~----~~~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~-~~~~~~~------- 634 (817)
|+....+. ..+..... ..-..+......|..+.||++|+|+++-+.- +|+|||+...+. ..+++.+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHH
Confidence 98633211 11111000 0001112245678899999999999987654 699999875543 3333221
Q ss_pred ----CCCCe---EEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 635 ----EGASV---TAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 635 ----~~~~i---~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
....| -.+.||. |.+.+.+|+..+..-+|-..+
T Consensus 329 ~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 329 NDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HhhhhccceeeeEEEEecC-Ccccccccccccceeeecccc
Confidence 11222 3478888 888899999888888876444
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=8.1e-10 Score=124.02 Aligned_cols=191 Identities=13% Similarity=0.177 Sum_probs=150.7
Q ss_pred CCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeec-CceEEEEeeecCCCccceeeccCccccCc
Q 003467 58 DPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSI-DFSIWQMAVAPSNSSLMHAVTNSDHIGNG 136 (817)
Q Consensus 58 ~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (817)
|+-..|.++.=+|...+ .++|+.||.|++|.+..+..+..+..- ...|+.+.|+.+|
T Consensus 2206 ~~v~~v~r~~sHp~~~~------Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG---------------- 2263 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY------YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG---------------- 2263 (2439)
T ss_pred cccCceeeecCCCCCce------EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC----------------
Confidence 44567777777788777 999999999999999999988776532 2788999999988
Q ss_pred cccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC
Q 003467 137 YLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN 216 (817)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 216 (817)
+.+.++..||.+.+|.+. .+.. ...+.|......+.|-. .
T Consensus 2264 ----------------------------------nk~~i~d~dg~l~l~q~~-pk~~---~s~qchnk~~~Df~Fi~--s 2303 (2439)
T KOG1064|consen 2264 ----------------------------------NKFGIVDGDGDLSLWQAS-PKPY---TSWQCHNKALSDFRFIG--S 2303 (2439)
T ss_pred ----------------------------------CceeeeccCCceeecccC-Ccce---eccccCCccccceeeee--h
Confidence 588889999999999986 3333 56667888888888864 6
Q ss_pred EEEEeeC---CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 217 MLYSGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 217 ~l~s~~~---dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
.+++++. ++.+.+||.--.....-+.. .|...++++++.|.. .|++|+.+|.|++||++..+++++++.
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~-------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHT-------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeee-------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 6777653 68999999643222222221 688999999999998 699999999999999998888777764
Q ss_pred CccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 293 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+. ...++++|+..|.++||++....
T Consensus 2377 ---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ---------hh-hhheeeccCcccceEEEEccccc
Confidence 34 45688999999999999998765
No 285
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=4.5e-07 Score=95.65 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=95.4
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc--------eEE-EEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG--------RVL-SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--------~v~-~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
+..+.+++.+|.+.-+|..+++.+-. ..+....+ .+. .++. ++..++.++.+|.+..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeE-EcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 45888888899999999987776532 12222100 010 1122 356778888999999999999999988
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCe-----eEEEEecCCCEEEEEccC
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV-----NALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~s~~~~~l~~~~~d 315 (817)
.... ..+.+--...+++++.+..+|.+.-+|.++|+.+..+......+ ...... +..++.++.+
T Consensus 146 ~~~~---------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~ 214 (394)
T PRK11138 146 TKVA---------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDN 214 (394)
T ss_pred ccCC---------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCC
Confidence 7631 12222222236788888899999999999999998876432111 111222 3457778889
Q ss_pred CcEEEEEeeccc
Q 003467 316 GQVILYKASCES 327 (817)
Q Consensus 316 g~i~iw~~~~~~ 327 (817)
|.+..++..+++
T Consensus 215 g~v~a~d~~~G~ 226 (394)
T PRK11138 215 GRVSAVLMEQGQ 226 (394)
T ss_pred CEEEEEEccCCh
Confidence 999999988876
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=4.3e-09 Score=100.84 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=113.2
Q ss_pred eEEEEecCCCcEEEEEcC-CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEE---c
Q 003467 494 IICSTISNSGMLFAYSDH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD---V 569 (817)
Q Consensus 494 i~~~~~s~~g~~la~~~~-~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d---~ 569 (817)
...+..+++++++|+++. ....++++..+..+.+.+.. ...+. ..+++.|-.+.....++..-|.++-+| .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~--~~v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV--SCVPK---RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE--eeccc---CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 345567889999999765 44447777764444444322 22222 344555655666666665555444444 4
Q ss_pred cCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCC
Q 003467 570 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 649 (817)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~ 649 (817)
..+.....+- |-..++.++||||+++|++++.|..|+|-.....-....+...|..-|..++.-+ +
T Consensus 140 ~~~~~~~~lG------------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 140 DSGRCEPILG------------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--N 205 (390)
T ss_pred cccCcchhhh------------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--C
Confidence 4344433332 8999999999999999999999999999888766655566677888899999985 5
Q ss_pred CeEEEEecCCeEEEEEcCCCcc
Q 003467 650 NVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 650 ~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
..|++++.|++|++||+.+++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ceeeecCCCCcEEEEecccCCc
Confidence 6799999999999999999975
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=4e-07 Score=106.19 Aligned_cols=250 Identities=14% Similarity=0.145 Sum_probs=154.6
Q ss_pred EEEEECCC-CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-CC------------CCcEEEEEEeecCCCCCCCceEE
Q 003467 17 VALATSAD-DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-DP------------KSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 17 ~~la~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-~~------------~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
..++++++ ++..++-..++.|.+||..... ...+.+ +. -....+|++.+++.. |+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~------LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL------LY 639 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE------EE
Confidence 45788876 4455555667889999976432 333322 10 123578999988765 55
Q ss_pred Eee-CCCeEEEEECCCCeEEEEEeecC-----------------ceEEEEeeecCCCccceeeccCccccCccccCCCCC
Q 003467 83 SSS-IDGSVSEWDLYDLKQKIVLQSID-----------------FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSND 144 (817)
Q Consensus 83 s~~-~d~~i~vwd~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (817)
.+. .++.|+++|+.++. +.++.+.+ ..-+.++++|++.
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g----------------------- 695 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE----------------------- 695 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC-----------------------
Confidence 554 45789999988765 33332211 1124566666331
Q ss_pred CCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEe-----eccCCc------cceEEEEEEcc
Q 003467 145 SDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH-----RSLPRV------SGRVLSVTWSA 213 (817)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~h------~~~v~~v~~s~ 213 (817)
..+++...++.|++||..++....+. ....++ -.....|+|+|
T Consensus 696 --------------------------~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp 749 (1057)
T PLN02919 696 --------------------------KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP 749 (1057)
T ss_pred --------------------------eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC
Confidence 35666677889999998654322110 011111 12456799999
Q ss_pred CCCEEE-EeeCCCcEEEEECCCCceEEEEEee---------cC---CC-CCCCceeEEEeEEecCC-eEEEEcCCCcEEE
Q 003467 214 DGNMLY-SGSSDGYIRSWDAKLGYEIYRITVG---------LG---GL-GSGPELCIWSLLSLRCG-TLVSADSTGSVQF 278 (817)
Q Consensus 214 dg~~l~-s~~~dg~i~vwd~~~g~~~~~~~~~---------~~---~~-~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~i 278 (817)
+|+.|+ +-+.++.|++||+.++......... .+ +. ....-.....+++.++| .+++-..++.|++
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 998555 4455689999999877542111000 00 00 00011224578899998 5677778899999
Q ss_pred EeCCCCeEEEEee-------------cCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 279 WDSRHGTLLQAHS-------------FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 279 wd~~~~~~~~~~~-------------~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
||..++....... +.-.....++++++|+.+++-+.++.|++|++.++.
T Consensus 830 iD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 830 LDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9998776543321 111256789999999988888889999999998765
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.97 E-value=2.3e-07 Score=90.76 Aligned_cols=227 Identities=20% Similarity=0.209 Sum_probs=142.3
Q ss_pred CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEE
Q 003467 34 DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQ 113 (817)
Q Consensus 34 dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~ 113 (817)
+|+|..||..+|+..|... +... .....+. ..+++.. +++++.++.|..||..+|+.+..... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~--~~~~-~~~~~~~-~~~~~~~------v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD--LGPG-IGGPVAT-AVPDGGR------VYVASGDGNLYALDAKTGKVLWRFDL-PGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE--CSSS-CSSEEET-EEEETTE------EEEEETTSEEEEEETTTSEEEEEEEC-SSCGGS
T ss_pred CCEEEEEECCCCCEEEEEE--CCCC-CCCccce-EEEeCCE------EEEEcCCCEEEEEECCCCCEEEEeec-cccccc
Confidence 6889999999998766542 2111 1222222 3334544 88888999999999999998877764 222111
Q ss_pred EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce
Q 003467 114 MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 193 (817)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 193 (817)
.....+ ..+++++.++.|+.+|..+++.+
T Consensus 71 ~~~~~~---------------------------------------------------~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 71 APVVDG---------------------------------------------------GRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp GEEEET---------------------------------------------------TEEEEEETTSEEEEEETTTSCEE
T ss_pred eeeecc---------------------------------------------------cccccccceeeeEecccCCccee
Confidence 112222 37788888889999998888776
Q ss_pred eEe-ecc-CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCC---ceeEEEeEEecCCeEE
Q 003467 194 IYH-RSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP---ELCIWSLLSLRCGTLV 268 (817)
Q Consensus 194 ~~~-~~~-~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~---~~~v~~v~~~~~~~l~ 268 (817)
-.. ... .... .........++..++.+..++.|..+|+++|+.+......... ...+ ...+..-....++.+.
T Consensus 100 W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 100 WSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp EEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTTEEE
T ss_pred eeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECCEEE
Confidence 431 111 1111 1122223333788999998999999999999999888752111 0000 0112233333456777
Q ss_pred EEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 269 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 269 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.++.++.+.-+|..+++.+.... ...+.. ....++..|++++.++.|..||+.+++
T Consensus 178 ~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 178 VSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 78878864444999999775443 222333 145677888888899999999999987
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.7e-07 Score=95.51 Aligned_cols=193 Identities=10% Similarity=0.060 Sum_probs=121.1
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeC---CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
.+....|||||+. .++..+. +..|.++|+.+|+...... ..+.....+|+|||..+
T Consensus 189 ~~~~p~wSpDG~~-----~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~l--------------- 247 (419)
T PRK04043 189 LNIFPKWANKEQT-----AFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKL--------------- 247 (419)
T ss_pred CeEeEEECCCCCc-----EEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEE---------------
Confidence 6778999999973 1443333 3579999999987655444 45556678899999643
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN 216 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 216 (817)
+++.. .+..|+++|+.++. . +.+..+.+......|+|||+
T Consensus 248 ----------------------------------a~~~~~~g~~~Iy~~dl~~g~-~---~~LT~~~~~d~~p~~SPDG~ 289 (419)
T PRK04043 248 ----------------------------------LLTMAPKGQPDIYLYDTNTKT-L---TQITNYPGIDVNGNFVEDDK 289 (419)
T ss_pred ----------------------------------EEEEccCCCcEEEEEECCCCc-E---EEcccCCCccCccEECCCCC
Confidence 22222 34577888876543 3 34444444345568999999
Q ss_pred EEEEeeCC-C--cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC---------CcEEEEeCCC
Q 003467 217 MLYSGSSD-G--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------GSVQFWDSRH 283 (817)
Q Consensus 217 ~l~s~~~d-g--~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d---------g~i~iwd~~~ 283 (817)
.|+..+.. + .|.+.|+.+|+..+.... +. ....|+||| .++..... ..|.+.|+.+
T Consensus 290 ~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-------g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-------GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEeCccC-------CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 88877643 2 688888887765332221 11 124899999 44433322 3688889887
Q ss_pred CeEEEEeecCccCeeEEEEecCCCEEEEEccC-C--cEEEEEeecc
Q 003467 284 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-G--QVILYKASCE 326 (817)
Q Consensus 284 ~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d-g--~i~iw~~~~~ 326 (817)
+.. ..+... .......|+|||+.|+....+ + .+.+.++...
T Consensus 359 g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 359 DYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 764 445443 233468999999988765442 2 3555555443
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=2.7e-07 Score=83.57 Aligned_cols=239 Identities=11% Similarity=0.015 Sum_probs=153.0
Q ss_pred EEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCc
Q 003467 400 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS 479 (817)
Q Consensus 400 ~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~ 479 (817)
+|+.||..|.+.+|...+....... +... ......+...+-+.-...++..+.++++..+......
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~--cd~s-nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----------- 151 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQ--CDVS-NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----------- 151 (344)
T ss_pred EEEeccccceeeeecccCcccceee--eccc-ccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----------
Confidence 8999999999999998864422111 0000 0011122233333344556666667887776644311
Q ss_pred cceeeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 480 TSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 480 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
....-.+-...++++|+|++++++ ++...|..|.++. .+..+.. ..+......-.+..|+.....+|++
T Consensus 152 -----~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 152 -----FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred -----ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeee---eEecccCCCceeeeeccCcceEEEE
Confidence 011111123778999999999888 6779999999985 3444322 2233333456678899999999999
Q ss_pred ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC--EEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 003467 559 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQRQHWFISRLEG 636 (817)
Q Consensus 559 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~--~la~~~~dg~i~vwd~~~~~~~~~~~~~~~ 636 (817)
..||++.|||+........... ..-+.|.+.+..+.||+-|. +|...-.-+.+.|.|+.++..+..+.....
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~s------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEIS------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred ecCCcEEEEEecccccchhhhc------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 9999999999975543322221 11123899999999998664 666666778899999999876655432221
Q ss_pred -------CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 637 -------ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 637 -------~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
..|..-.|+. ++.-..+.+++. +..|++.++.
T Consensus 296 ~~~~~~tq~ifgt~f~~-~n~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNN-ENESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred ccccccccccccccccC-CCcccccccchh-hheeeccccc
Confidence 2366777877 666666666544 7788887664
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.93 E-value=3.2e-08 Score=89.02 Aligned_cols=217 Identities=15% Similarity=0.187 Sum_probs=135.2
Q ss_pred EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee--cCceEEEEeeecCCCccceeecc
Q 003467 52 QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTN 129 (817)
Q Consensus 52 ~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~ 129 (817)
+-.+.+|..-.|+.+.|+.+.. ||++..++.+......++.+....+. --++.++++.+..-
T Consensus 28 vD~i~~~~d~~~~~~~~v~~~~-------lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep--------- 91 (319)
T KOG4714|consen 28 VDEIMQHADVKLSKVSLSAEYI-------LFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEI--------- 91 (319)
T ss_pred hhhcccccceEEEEeechhhhe-------eecccchhheeeeccceEEEechhhcccCcCceeeeeccCCC---------
Confidence 3345555455577777776654 78888888888877766665533321 23455666643211
Q ss_pred CccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC-CccceEEE
Q 003467 130 SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLS 208 (817)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~ 208 (817)
.....+.-.++.++++..||.+.+++.+. .+...+... .|.+ -.+
T Consensus 92 -------------------------------~p~~~~s~~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~-~as 137 (319)
T KOG4714|consen 92 -------------------------------DPNDACTMTDNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSG-SAS 137 (319)
T ss_pred -------------------------------CCcccccccCCceEecCCCceEEEEechH--HHhhhhhccccccc-ccc
Confidence 00111122235899999999999999863 222222222 1221 122
Q ss_pred EEEccCCCEEEEeeC-----CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeC
Q 003467 209 VTWSADGNMLYSGSS-----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS 281 (817)
Q Consensus 209 v~~s~dg~~l~s~~~-----dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~ 281 (817)
.++...++.|.++.- -+..+.|+++.-+.+..-. .....|.+++-.|.. .+++|+.||.+-+||.
T Consensus 138 ~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~ 209 (319)
T KOG4714|consen 138 RKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDA 209 (319)
T ss_pred cceeecccEEecCCcceEeeccceeeecccccccccccc--------cccccchhhhCCcccccEEEEecCCCeEEEEEc
Confidence 233334555555422 2355566554332222111 122338888888766 6889999999999999
Q ss_pred CCCeEE-EEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeecc
Q 003467 282 RHGTLL-QAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 282 ~~~~~~-~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+..... ..++.|+.+|..+-|+| ++..|++++.||.+..||..+.
T Consensus 210 rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 210 RNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred ccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 987543 44678999999999999 5688999999999999998753
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.8e-07 Score=96.46 Aligned_cols=206 Identities=7% Similarity=-0.031 Sum_probs=122.4
Q ss_pred ceEEEEECCCCCe-EEEEec---CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-EeeC--C
Q 003467 15 PVVALATSADDSQ-VAAARE---DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF-SSSI--D 87 (817)
Q Consensus 15 ~I~~la~spdg~~-la~~~~---dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~-s~~~--d 87 (817)
.+....|||||+. ++..+. +..|.++|+.+++. . .+... .+......|+|||+. |+ +.+. +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~----~-~lt~~-~g~~~~~~~SPDG~~------la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK----E-KIASS-QGMLVVSDVSKDGSK------LLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE----E-EEecC-CCcEEeeEECCCCCE------EEEEEccCCC
Confidence 6778999999985 665432 35689999988862 2 22222 455677889999986 54 4433 3
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
..|.++|+.+++.. .+..+.+......|+|||..+
T Consensus 257 ~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I-------------------------------------------- 291 (419)
T PRK04043 257 PDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRI-------------------------------------------- 291 (419)
T ss_pred cEEEEEECCCCcEE-EcccCCCccCccEECCCCCEE--------------------------------------------
Confidence 56888898888744 344343334456899999543
Q ss_pred ccCCEEEEEeCCC--cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC---------CcEEEEECCCCc
Q 003467 168 VEDRRVALACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD---------GYIRSWDAKLGY 236 (817)
Q Consensus 168 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---------g~i~vwd~~~g~ 236 (817)
+++....+ .|++.|+.+++... .+..+. . ...|+|||++|+..+.. ..|.+.|+.++.
T Consensus 292 -----~F~Sdr~g~~~Iy~~dl~~g~~~r--lt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 292 -----VFVSDRLGYPNIFMKKLNSGSVEQ--VVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred -----EEEECCCCCceEEEEECCCCCeEe--CccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 22222223 67777776544321 111121 1 24899999999877654 368888988775
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEEc-CCCc--EEEEeCCCCeEEEEeecCccCeeE
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSAD-STGS--VQFWDSRHGTLLQAHSFHKGDVNA 299 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~-~dg~--i~iwd~~~~~~~~~~~~h~~~v~~ 299 (817)
. ..++. . .......|+|||. ++... ..+. +.+.++. |.....+....+.+..
T Consensus 361 ~-~~LT~--------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 361 I-RRLTA--------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQS 416 (419)
T ss_pred e-EECCC--------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence 4 44442 1 1223578999993 33332 2233 5566665 4444445443444443
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=3e-08 Score=91.31 Aligned_cols=291 Identities=12% Similarity=0.173 Sum_probs=165.0
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC-CcEEEEEEcCCC-----------CCcEEEEEEeecCCCCCCCce
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS-GWHCQLTVHGDP-----------KSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~g~~-----------~~~V~~l~~s~~~~~~~~~~~ 80 (817)
...|+++.|-.-|.|||+|...|.|.++.-....- .+.....+++|. ...|..+.|..++.. ..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r----~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR----NH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc----ce
Confidence 46799999999999999999999999997654321 011123345542 246889999888766 66
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEe---------ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQ---------SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
++..+.|.+|++|.+.........+ ..++++.+. .. + .......+-...+ ....
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~----~~--l-~lprls~hd~iia----------a~p~ 164 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST----KE--L-LLPRLSEHDEIIA----------AKPC 164 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH----HH--h-hcccccccceEEE----------eccc
Confidence 8888899999999976532211100 001111100 00 0 0000000000000 0000
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc-----cceEEEEEEccCCC-EEEEeeCCC
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV-----SGRVLSVTWSADGN-MLYSGSSDG 225 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~v~~s~dg~-~l~s~~~dg 225 (817)
+.....+..-....++..++......+|-.|-+|++.-....--+..+..| ..-|++..|+|... .+...++.|
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred eeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 001011111122223333334455566788899988733222112333344 34588899999754 455667789
Q ss_pred cEEEEECCCCce------EEEEEeecCC--CCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC-CeEEEEeecCc--
Q 003467 226 YIRSWDAKLGYE------IYRITVGLGG--LGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHK-- 294 (817)
Q Consensus 226 ~i~vwd~~~g~~------~~~~~~~~~~--~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~-- 294 (817)
.|++-|++.... +......... .-.+-...|..+.|+++|+++.+-.--+|++||.+. ..++.++..|.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHH
Confidence 999999973221 1111110000 001234567889999999766666667899999985 45677765553
Q ss_pred ----------cCe---eEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 295 ----------GDV---NALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 295 ----------~~v---~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
..| ..+.||.|.+.+++|+..+..-+|-..
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 222 347888899999999988887777643
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=1.3e-08 Score=97.56 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCcee
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 255 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~ 255 (817)
+++...+.+|....+ .. ..+-+|-..++.|+|+||+++|+++..|..||+-....-..+..+-. +|..-
T Consensus 128 agD~~~~di~s~~~~-~~---~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------GH~eF 196 (390)
T KOG3914|consen 128 AGDVYSFDILSADSG-RC---EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------GHKEF 196 (390)
T ss_pred cCCceeeeeeccccc-Cc---chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------ccHhh
Confidence 344555666665432 22 56679999999999999999999999999999988877666766665 79999
Q ss_pred EEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 256 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 256 v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
|..++..++..|++++.|++|++||+.+|+++.++..
T Consensus 197 VS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 197 VSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence 9999999999999999999999999999999876643
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=2.9e-06 Score=99.21 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=85.8
Q ss_pred ceeEEEEecCCCEEEEE-ecCCcEEEEEccCCceeeeeccCcc----------cccccCCCCCCceeEEEEccCCCEEEE
Q 003467 542 FAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCRE----------EHDREIQPSEPPITKMFTSSDGQWLAA 610 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~l~~s~dg~~la~ 610 (817)
....++|+||+++|+++ ..++.|++||+.++.......+... ..+......-.....++++++|+.+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 45678888988865555 4467899998876643211100000 000000001223568999999998888
Q ss_pred EeCCCcEEEEECCCcceEEEEecC------------CCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 611 VNCFGDVYIFNLEIQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 611 ~~~dg~i~vwd~~~~~~~~~~~~~------------~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
-..+++|++||.+++......... .-..+..+++++ +++++++-+.++.|++||+++++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887755333211 113578899999 998888888889999999998764
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=1.6e-06 Score=82.98 Aligned_cols=256 Identities=18% Similarity=0.217 Sum_probs=165.1
Q ss_pred CCceEEEEECC-CCCeEEEEecCCc-EEEEecCCCCCCcEEEEEEcCCCCC-cEEEEEEeecCCCCCCCceEEEee----
Q 003467 13 PSPVVALATSA-DDSQVAAAREDGS-LEIWLVSPGTSGWHCQLTVHGDPKS-RISSLVWCHAGKMGLPGGRLFSSS---- 85 (817)
Q Consensus 13 ~~~I~~la~sp-dg~~la~~~~dg~-i~iwd~~~~~~~~~~~~~~~g~~~~-~V~~l~~s~~~~~~~~~~~l~s~~---- 85 (817)
|..-.+++.+| ++..+|+++.-|+ ..+||..+++. ...+...... ---.-+||+||++ |++.-
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~----~~~~~a~~gRHFyGHg~fs~dG~~------LytTEnd~~ 73 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL----LQRLWAPPGRHFYGHGVFSPDGRL------LYTTENDYE 73 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce----eeEEcCCCCCEEecCEEEcCCCCE------EEEeccccC
Confidence 44556788999 6777888877665 67799998874 2222211111 1113579999987 88753
Q ss_pred -CCCeEEEEECC-CCeEEEEEeecCceEEEEeeecCCCccceeeccCc-cccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 86 -IDGSVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSD-HIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 86 -~d~~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
..|.|-|||.. +.+.+..+..|+-.-..+.+.||+..+++++.... +...+
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G-------------------------- 127 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG-------------------------- 127 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC--------------------------
Confidence 35889999999 77888889988888888999999977766543221 00000
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc--CCccceEEEEEEccCCCEEEEeeCCCc-------EEEEECC
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGY-------IRSWDAK 233 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~dg~-------i~vwd~~ 233 (817)
...|-....+..+...|..++..+.. ..+ .-|+-.|..+++.++|..++..-..|. |-+++
T Consensus 128 -------R~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~-- 197 (305)
T PF07433_consen 128 -------RAKLNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR-- 197 (305)
T ss_pred -------ceecChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--
Confidence 01344445556677777766655432 345 447889999999999987766544332 33333
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEE
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~ 311 (817)
.++.+..+..+. .........+-+|++++++ .+ +++-..+.+.+||..+++.+.... -.++..++..+++ ++++
T Consensus 198 ~g~~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 198 RGGALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVS 273 (305)
T ss_pred CCCcceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEe
Confidence 333333333210 0011345778999999998 44 555567889999999999987765 3567778877777 5555
Q ss_pred EccCCcEE
Q 003467 312 TGSDGQVI 319 (817)
Q Consensus 312 ~~~dg~i~ 319 (817)
.+ .|.+.
T Consensus 274 sG-~G~~~ 280 (305)
T PF07433_consen 274 SG-QGQLI 280 (305)
T ss_pred CC-CccEE
Confidence 44 44433
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2e-08 Score=103.27 Aligned_cols=246 Identities=16% Similarity=0.183 Sum_probs=172.5
Q ss_pred ceEEEEECCC--CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 15 PVVALATSAD--DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 15 ~I~~la~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
.|-...+||. ..+-++...+..-.||++..... -..+..++|| ..+|+.+-|.|... ..|++++.|..|..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~-~aIef~lhgh-sraitd~n~~~q~p-----dVlatcsvdt~vh~ 141 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS-NAIEFVLHGH-SRAITDINFNPQHP-----DVLATCSVDTYVHA 141 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCc-cceEEEEecC-ccceeccccCCCCC-----cceeecccccccee
Confidence 4455566654 34555656667788999875432 2367888898 89999999998765 46999999999999
Q ss_pred EECCCCe-EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 93 WDLYDLK-QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 93 wd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
||+.+.. ++.....-......++|+.-. +
T Consensus 142 wd~rSp~~p~ys~~~w~s~asqVkwnyk~--------------------------------------------------p 171 (1081)
T KOG0309|consen 142 WDMRSPHRPFYSTSSWRSAASQVKWNYKD--------------------------------------------------P 171 (1081)
T ss_pred eeccCCCcceeeeecccccCceeeecccC--------------------------------------------------c
Confidence 9998754 445555555566778887655 2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+.+.+....|++||..-+.... ..+++|...|..++|..- -..+.+.+.||+|+.||........+...
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v------- 242 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV------- 242 (1081)
T ss_pred chhhhccCCceEEEeccCCCcce--EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-------
Confidence 45556666789999998554442 678889999999999642 34678899999999999876544443332
Q ss_pred CCceeEEEeEEecCC--eEEEEcC-CCcEEE---------EeCCC-CeEEEEeecCccCeeEEEEecCC----------C
Q 003467 251 GPELCIWSLLSLRCG--TLVSADS-TGSVQF---------WDSRH-GTLLQAHSFHKGDVNALAAAPSH----------N 307 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~--~l~s~~~-dg~i~i---------wd~~~-~~~~~~~~~h~~~v~~l~~s~~~----------~ 307 (817)
....+||.-.+.|=| +++--.. +..+.+ |+..+ .+.+.+|.+|...|...-|-..+ -
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdf 322 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDF 322 (1081)
T ss_pred cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccce
Confidence 466788888888755 3222111 112333 33333 46789999999988776664322 2
Q ss_pred EEEEEccCCcEEEEEeecc
Q 003467 308 RVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~ 326 (817)
.|++-+.|..+++|-+.+.
T Consensus 323 QLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eEEEeecCCceEeeeccHH
Confidence 6899999999999988653
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.81 E-value=1.1e-05 Score=79.15 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=142.3
Q ss_pred EEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEe-ecCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 18 ALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWC-HAGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 18 ~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s-~~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
+++|.+ ++.++.+--..+.|..|+..++. ...+... ...++++. +++. |+.+..++ +.++|+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----~~~~~~~---~~~G~~~~~~~g~-------l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----VEVIDLP---GPNGMAFDRPDGR-------LYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-----EEEEESS---SEEEEEEECTTSE-------EEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-----EEEEecC---CCceEEEEccCCE-------EEEEEcCc-eEEEec
Confidence 578888 77777777778999999998875 3333332 26777887 5654 56665554 566699
Q ss_pred CCCeEEEEEee-----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 96 YDLKQKIVLQS-----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 96 ~~~~~~~~~~~-----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
.+++....... .......+++.++|.
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~------------------------------------------------- 98 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN------------------------------------------------- 98 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--------------------------------------------------
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCC-------------------------------------------------
Confidence 99876554443 346788999999983
Q ss_pred CEEEEEeCC--------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEE-eeCCCcEEEEECCCCce-EE-
Q 003467 171 RRVALACDD--------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYS-GSSDGYIRSWDAKLGYE-IY- 239 (817)
Q Consensus 171 ~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~~g~~-~~- 239 (817)
+.++.... |.|..++.. ... ..+...-...+.++|+||++.|+. -+..+.|..+++..... +.
T Consensus 99 -ly~t~~~~~~~~~~~~g~v~~~~~~--~~~---~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 99 -LYVTDSGGGGASGIDPGSVYRIDPD--GKV---TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETT--SEE---EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred -EEEEecCCCccccccccceEEECCC--CeE---EEEecCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 23322221 445555553 222 222223445789999999998764 45678899999863322 21
Q ss_pred --EEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe-cCCCEEEEEc
Q 003467 240 --RITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFSTG 313 (817)
Q Consensus 240 --~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~~~~ 313 (817)
.+. ... ......-.+++..+|.| ++....+.|.++|.+ |+.+..+......+++++|. ++.+.|+..+
T Consensus 173 ~~~~~-~~~----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 173 RRVFI-DFP----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE-E-S----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred eeeEE-EcC----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 121 110 12245778999999954 455568899999998 99998888776789999994 6777777654
No 299
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.80 E-value=1.3e-06 Score=80.52 Aligned_cols=167 Identities=13% Similarity=0.086 Sum_probs=118.9
Q ss_pred cCCceEEEEeecCCCCCceEEEeeecCCccc-cceeEEEEecCCCEEEEEecCCcEEEEEccCCceee--eeccCccccc
Q 003467 510 DHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH--TFTPCREEHD 586 (817)
Q Consensus 510 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~~ 586 (817)
..+.+.+|.......... ++........ ....++.|++-+..++++..+|.+.+.+.....+.. ++++
T Consensus 93 a~G~i~~~r~~~~~ss~~---L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~------ 163 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVH---LRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV------ 163 (339)
T ss_pred ccceEEEEeeccceeeee---ecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc------
Confidence 558888888765211111 1111111111 135678899999999999999999977655444433 6666
Q ss_pred ccCCCCCCceeEEEEccC-CCEEEEEeCCCcEEEEECC-CcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEE
Q 003467 587 REIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLE-IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF 664 (817)
Q Consensus 587 ~~~~~~~~~i~~l~~s~d-g~~la~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vw 664 (817)
|+-+++-..|+.. -+.+.+|++|+.+.-||+. .++..+.-...|...|.++.-+|..+.++++|+.|..|++|
T Consensus 164 -----He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 164 -----HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred -----cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 8999999999764 4588999999999999998 44555554566778999999998778899999999999999
Q ss_pred EcCCCccccchhcccCccCcchhcCCCceeEEEECCC
Q 003467 665 DVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 665 d~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~ 701 (817)
|..+-.. |-.-....+.|+.+.++|.
T Consensus 239 DtRnm~k-----------Pl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 239 DTRNMGK-----------PLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred ehhcccC-----------ccccCccccceEEEEecch
Confidence 9974322 1111223389999999996
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=5.6e-06 Score=76.73 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=131.5
Q ss_pred ceeecCCeEEEEEeCC-eEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEE
Q 003467 440 NTIFSHTSLLLVQYSC-RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLF 517 (817)
Q Consensus 440 ~~~~s~~~~~l~~~~~-~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~ 517 (817)
.++.+.+|++++.-.+ .++|......-.. ...-.++.......-+-++||||+.+||++ +.|+|++|
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-----------i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSS-----------IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchh-----------eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 3556788888875544 6666654432211 111123333344557889999999999997 56999999
Q ss_pred EeecCCCCCceEEEeeec-CCccc-cceeEEEEecC------CCEEEEEecCCcEEEEEccC-----CceeeeeccCccc
Q 003467 518 ELKKGKVGQGEWIINKRQ-LPRKL-QFAHSMIFSYD------SSQLIIAGHDRRIYVVDVSS-----SELLHTFTPCREE 584 (817)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~fspd------~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~ 584 (817)
++.. ..++.+.... .++.. ..|..|.|-+- ...|++....|.++=|-+.. .+..++|.-...
T Consensus 71 dl~g----~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~- 145 (282)
T PF15492_consen 71 DLMG----SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH- 145 (282)
T ss_pred eccc----ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-
Confidence 9863 3444443321 22222 36777777442 22566667788777666532 244455443211
Q ss_pred ccccCCCCCCceeEEEEccCCCEEEEEeCC-----------CcEEEEECCCcceEEE--------------------Ee-
Q 003467 585 HDREIQPSEPPITKMFTSSDGQWLAAVNCF-----------GDVYIFNLEIQRQHWF--------------------IS- 632 (817)
Q Consensus 585 ~~~~~~~~~~~i~~l~~s~dg~~la~~~~d-----------g~i~vwd~~~~~~~~~--------------------~~- 632 (817)
+...|+++.++|..++|++|+.. .-+..|.+-++...+. +.
T Consensus 146 -------yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 146 -------YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred -------CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 57789999999999988887632 1266777632221111 11
Q ss_pred -------cCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 633 -------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 633 -------~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
......|..|..|| |++.||+...+|.|.+|++.+-.+
T Consensus 219 ~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 219 FKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchh
Confidence 11236788999999 999999999999999999987654
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=1.8e-05 Score=77.31 Aligned_cols=146 Identities=25% Similarity=0.309 Sum_probs=93.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+.+++++.++.|+.||..+++.+-.. .+.+. ... . ..++..++.++.++.|+.+|..+|+.+.+.......
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~-~~~~~~~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-- 108 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRF-DLPGPISGA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-- 108 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEE-ECSSCGGSG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC--
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEe-eccccccce---e--eecccccccccceeeeEecccCCcceeeeecccccc--
Confidence 37888899999999999877665322 22221 112 1 224567777778889999999999999985321111
Q ss_pred CCCceeEEEeEEec-CCeEEEEcCCCcEEEEeCCCCeEEEEeecCccC----------eeEEEEecCCCEEEEEccCCcE
Q 003467 250 SGPELCIWSLLSLR-CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD----------VNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 250 ~~~~~~v~~v~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v~~l~~s~~~~~l~~~~~dg~i 318 (817)
... ......... ++.++.+..++.|..+|.++|+.+......... +..-....++ .++.++.++.+
T Consensus 109 -~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 109 -PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp -TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred -ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 011 111222221 457888888999999999999999888764422 1222222344 78888888864
Q ss_pred EEEEeeccc
Q 003467 319 ILYKASCES 327 (817)
Q Consensus 319 ~iw~~~~~~ 327 (817)
..+|+.+++
T Consensus 186 ~~~d~~tg~ 194 (238)
T PF13360_consen 186 VAVDLATGE 194 (238)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCC
Confidence 444887775
No 302
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=4.4e-07 Score=95.08 Aligned_cols=293 Identities=13% Similarity=0.141 Sum_probs=158.9
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEE
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWD 94 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd 94 (817)
.+++++|+|..-.||+|..-|.+.+|+..+.+ .++....|..+|..|.||++|.. |+++..-|.|.+|.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv~~th~a~i~~l~wS~~G~~------l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTVVETHPAPIQGLDWSHDGTV------LMTLDNPGSVHLWR 129 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCce-----eeeeccCCCCCceeEEecCCCCe------EEEcCCCceeEEEE
Confidence 35567788888889999999999999988765 56777777899999999999976 99999999999999
Q ss_pred CCCCeEEEEE--eecC----ceEEEEeeecCCCccc---eeeccCcc-ccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 95 LYDLKQKIVL--QSID----FSIWQMAVAPSNSSLM---HAVTNSDH-IGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 95 ~~~~~~~~~~--~~~~----~~i~~~~~s~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
..--..++.. -.|. -..||...++++..++ -+...++. ..... ...++... ......
T Consensus 130 ~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~-----fnwk~~~a--------~rs~~k 196 (1416)
T KOG3617|consen 130 YDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEP-----FNWKESLA--------ERSDEK 196 (1416)
T ss_pred eeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhccc-----ccCccchh--------hccccc
Confidence 8632222221 1222 3456777777743221 11111111 00000 00000000 011111
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC-CCCceEEEEEe
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA-KLGYEIYRITV 243 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~-~~g~~~~~~~~ 243 (817)
.-+++|..+..++.+|+|+-.|-. +.... ...+.. . ..+-|.+--.-|+..-.+-.+.++-+ .+|........
T Consensus 197 sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~-V~k~dS---~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~v 270 (1416)
T KOG3617|consen 197 SGVPKGTEFLFAGKSGTVYYVDQN-GRQRT-VHKLDS---E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAV 270 (1416)
T ss_pred cCCCCCcEEEEEcCCceEEEEcCC-CcEEE-EEEccc---h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhh
Confidence 234566788888999998877753 32221 112111 1 22334443333333333333333222 22322211111
Q ss_pred ecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 244 GLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
...+...+. .|-++++-+.|.++ .....-+ .....++|++++..+..|..|...|.+.+|.-
T Consensus 271 k~sgk~Ggr-----------qGgiA~sEssGvLr------~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 271 KVSGKLGGR-----------QGGIACSESSGVLR------KSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred hhccccCCc-----------cCcccccccccccc------CCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 111100011 22355554444211 1111111 12467999999999999999999999999976
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
...... ..+....|. +...+...+.|+.+.|.
T Consensus 333 v~~~f~------g~p~~d~w~-l~~~~e~~g~I~~i~Wg 364 (1416)
T KOG3617|consen 333 VNKGFQ------GDPTIDVWT-LNGKRESLGKISLIRWG 364 (1416)
T ss_pred cCcccc------CCCCcceEE-ecCchhhccceEEEEec
Confidence 655422 122356674 33444445667777775
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.75 E-value=6.4e-05 Score=83.19 Aligned_cols=234 Identities=15% Similarity=0.174 Sum_probs=139.5
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
..|.++.|..++.-|.++...|.|.+-|..+.. ..+.|.-...|.+++||||++. ++.++.++++.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~------l~liT~~~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEEL------LALITGRQTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcE------EEEEeCCcEEEEE
Confidence 689999999999999999999999999887753 4555666789999999999998 8888777766543
Q ss_pred ECCCCeEEEEEeec--C---ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 94 DLYDLKQKIVLQSI--D---FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 94 d~~~~~~~~~~~~~--~---~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
. .+-.++....-+ . +..-.+-|-...
T Consensus 137 T-~~f~~i~E~~L~~d~~~~sk~v~VGwGrke------------------------------------------------ 167 (1265)
T KOG1920|consen 137 T-KDFEPIAEKPLDADDERKSKFVNVGWGRKE------------------------------------------------ 167 (1265)
T ss_pred e-ccccchhccccccccccccccceecccccc------------------------------------------------
Confidence 3 222222111100 0 000011111100
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccCCCEEEEe-----eCCCcEEEEECCCCceEEEE
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSG-----SSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~-----~~dg~i~vwd~~~g~~~~~~ 241 (817)
.=+-|+ .|.....+..... +.+. .....=+++.|--||+++++. ..-..|+|||-+ |.. ...
T Consensus 168 ---Tqfrgs-~gr~~~~~~~~~e-----k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~ 236 (1265)
T KOG1920|consen 168 ---TQFRGS-EGRQAARQKIEKE-----KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NST 236 (1265)
T ss_pred ---eeeecc-hhhhccccccccc-----ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcc
Confidence 001111 1111111111000 1011 112233568999999999883 222789999965 432 222
Q ss_pred EeecCCCCCCCceeEEEeEEecCCe-EEEE---cCCCcEEEEeCCC---CeEEEEeecCccCeeEEEEecCCCEEEE---
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGT-LVSA---DSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPSHNRVFS--- 311 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~---~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~~--- 311 (817)
.. .....=.+++|-|.|. +++- .+++.|.++.-+- |...-.+......|..++|+.++..|++
T Consensus 237 se-------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~ 309 (1265)
T KOG1920|consen 237 SE-------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTS 309 (1265)
T ss_pred cC-------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeec
Confidence 21 3445556789999884 4432 4566799997652 2222233333445899999999999887
Q ss_pred EccCCcEEEEEeecc
Q 003467 312 TGSDGQVILYKASCE 326 (817)
Q Consensus 312 ~~~dg~i~iw~~~~~ 326 (817)
......|++|...+-
T Consensus 310 ~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccceEEEEEecCe
Confidence 555556999987663
No 304
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=0.00011 Score=67.00 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=79.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCc
Q 003467 215 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK 294 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 294 (817)
..+++.|+..+.+.--|..+|+...+... ...+.+-+..-...++.|+..|.+.+.+.++|...+.+..-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---------g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---------CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 35677788888888889999988877653 233444333345579999999999999999998888876543
Q ss_pred cCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 295 GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.--......+++..++.++.|+..+..|..+..
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 332334567889999999999999999988765
No 305
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.71 E-value=0.00096 Score=72.67 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=96.9
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC------CEEEEEeCCC
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG------QWLAAVNCFG 615 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg------~~la~~~~dg 615 (817)
.++....+.+...++.++.++.+...++..+.+...-+.. .+..|.|+.++|-| +++|+|..+.
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~----------~e~evaCLDisp~~d~~~~s~~~aVG~Ws~ 558 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKE----------FEYEVACLDISPLGDAPNKSRLLAVGLWSD 558 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeehe----------ecceeEEEecccCCCCCCcceEEEEEeecc
Confidence 3455555667778888888888888887665532222211 46789999999842 2788888776
Q ss_pred cEEEE-ECCCcceEEEEec-CCC--CCeEEEEecCCCCCeEEEEecCCeEEEE--EcCCCccccchhcccCccCcchhcC
Q 003467 616 DVYIF-NLEIQRQHWFISR-LEG--ASVTAAGFPPQNNNVLIITTSSNQVYVF--DVEAKQLGEWSMQHTFVLPRRYQEF 689 (817)
Q Consensus 616 ~i~vw-d~~~~~~~~~~~~-~~~--~~i~~l~~sp~d~~~l~~~~~d~~i~vw--d~~~~~~~~ws~~~~~~~~~~~~~~ 689 (817)
.+.+. -+.+....+.... ... ..|.-..|-- |..+|.++..||.+.-| |..++++++--+..-..-|-.+...
T Consensus 559 ~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f 637 (1096)
T KOG1897|consen 559 ISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTF 637 (1096)
T ss_pred eEEEEEECCCcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEE
Confidence 54443 3344333322211 110 2445556665 78899999999977654 5566666442211112334444444
Q ss_pred CCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 690 PGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 690 ~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
+.....--|.-. ....++.+....+|.-.++-
T Consensus 638 ~sk~~t~vfa~s-drP~viY~~n~kLv~spls~ 669 (1096)
T KOG1897|consen 638 SSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSL 669 (1096)
T ss_pred eeCCceEEEEeC-CCCEEEEecCCcEEEeccch
Confidence 433322222221 24557778888888876665
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.71 E-value=7.1e-07 Score=80.59 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=101.4
Q ss_pred ccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE-EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC---
Q 003467 198 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST--- 273 (817)
Q Consensus 198 ~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d--- 273 (817)
.+..|+++-.+-+.+--++.++++..||.+.+.+.+.-..+ .++.. .+ ..-.+.++...+.++....-
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-------~~-~~~as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPS-------IH-SGSASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccc-------cc-ccccccceeecccEEecCCcceE
Confidence 33344443333334445678999999999999997652211 11111 11 11112233334444443333
Q ss_pred ---CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc
Q 003467 274 ---GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 349 (817)
Q Consensus 274 ---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (817)
+..+.|+++.-+.+..-+.....|.+++-+|..+ .+++|+.||.+.+||.+.... .+..+
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------p~S~l 219 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------PVSLL 219 (319)
T ss_pred eeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------hHHHH
Confidence 3455666653222211111223499999999665 555778899999999988753 55678
Q ss_pred ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 350 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 350 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
..|...+..+-|. |.. .+.|+++++||.+..||..+
T Consensus 220 ~ahk~~i~eV~FH---------pk~-----------------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 KAHKAEIWEVHFH---------PKN-----------------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHhhhhhhheecc---------CCC-----------------------chheeEecCCCcEEEEcCCC
Confidence 9999999999997 332 25899999999999999874
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=1.2e-05 Score=77.30 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=75.5
Q ss_pred eEEEEEEcc-CCCEEEEeeCCCc-EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEE-----cCCCcE
Q 003467 205 RVLSVTWSA-DGNMLYSGSSDGY-IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSA-----DSTGSV 276 (817)
Q Consensus 205 ~v~~v~~s~-dg~~l~s~~~dg~-i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~-----~~dg~i 276 (817)
+.-.++.+| ++..++.+-.-|+ ..+||..+|+....+..+.+.+..+ .-.|++||. |.+. ...|.|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG------Hg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG------HGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec------CEEEcCCCCEEEEeccccCCCcEEE
Confidence 444688888 4555666666554 7899999999999887543332222 357999994 4443 335789
Q ss_pred EEEeCC-CCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 277 QFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 277 ~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 999999 678888898888777889999999888876
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=6.1e-05 Score=73.80 Aligned_cols=210 Identities=15% Similarity=0.152 Sum_probs=132.9
Q ss_pred EEEEEee-cCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeee-cCCCccceeeccCccccCccccCC
Q 003467 64 SSLVWCH-AGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA-PSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 64 ~~l~~s~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
++++|.+ ++.+ +++--..+.|..|+..+++... +.... ...+++. +++
T Consensus 3 Egp~~d~~~g~l------~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g--------------------- 52 (246)
T PF08450_consen 3 EGPVWDPRDGRL------YWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG--------------------- 52 (246)
T ss_dssp EEEEEETTTTEE------EEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS---------------------
T ss_pred cceEEECCCCEE------EEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC---------------------
Confidence 4678888 5544 5565568999999999877543 33222 5667777 565
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc-CC-ccceEEEEEEccCCCEEE
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL-PR-VSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~v~~s~dg~~l~ 219 (817)
.++++...+ +.++|..+++...+.... .. .....+.+++.|+|++.+
T Consensus 53 ------------------------------~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~ 101 (246)
T PF08450_consen 53 ------------------------------RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYV 101 (246)
T ss_dssp ------------------------------EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEE
T ss_pred ------------------------------EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEE
Confidence 666666644 455588765433222222 22 456889999999999777
Q ss_pred EeeCC--------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e-EEEEcCCCcEEEEeCCC-Ce-E-
Q 003467 220 SGSSD--------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRH-GT-L- 286 (817)
Q Consensus 220 s~~~d--------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~~dg~i~iwd~~~-~~-~- 286 (817)
+.... |.|..++.. ++...... .-...+.++|+|++ . +++-+..+.|..+++.. +. .
T Consensus 102 t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 102 TDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp EEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred EecCCCccccccccceEEECCC-CeEEEEec---------CcccccceEECCcchheeecccccceeEEEecccccccee
Confidence 65543 557777766 54333332 34556899999999 3 45667788899998853 22 1
Q ss_pred ----EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 287 ----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 287 ----~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
...+....+..-.+++..+|+..++....+.|.+++.. ++ .+..+......+.+++|.
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-----------------~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-----------------LLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-----------------EEEEEE-SSSSEEEEEEE
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-----------------EEEEEcCCCCCEEEEEEE
Confidence 12222222347789999999877776678899999977 44 444444444467777773
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.65 E-value=9e-05 Score=82.10 Aligned_cols=157 Identities=14% Similarity=0.064 Sum_probs=97.5
Q ss_pred CCeEEEEecCCCcEEEEE-----cC-CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe---cCC
Q 003467 492 RKIICSTISNSGMLFAYS-----DH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG---HDR 562 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~-----~~-~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~---~dg 562 (817)
..-+++.|-.||+++|++ .+ ..+++|+-+. ... ..-......-.+++|-|.|..+++.. .|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg---~Ln------s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG---ALN------STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc---hhh------cccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 345678899999999983 44 7888997652 111 00011112345789999999998873 456
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEE---EeCCCcEEEEECCCcceEEEE-ecCCCCC
Q 003467 563 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA---VNCFGDVYIFNLEIQRQHWFI-SRLEGAS 638 (817)
Q Consensus 563 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~---~~~dg~i~vwd~~~~~~~~~~-~~~~~~~ 638 (817)
.|.+|.-+ |-.-..|.... +.....+..++|+.++..||+ ......|++|-+.+....... ..+....
T Consensus 267 ~IvffErN-GL~hg~f~l~~-------p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~ 338 (1265)
T KOG1920|consen 267 DIVFFERN-GLRHGEFVLPF-------PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA 338 (1265)
T ss_pred cEEEEecC-CccccccccCC-------cccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc
Confidence 79999843 43333332210 113445999999999999998 444455999988765432111 1122222
Q ss_pred eEEEEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 639 VTAAGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 639 i~~l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
. +.|+|.....|.+-..+|.+.++++.
T Consensus 339 ~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 339 L--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred c--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 2 88999556667666677777776653
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-06 Score=84.70 Aligned_cols=317 Identities=14% Similarity=0.121 Sum_probs=193.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+++.+++-||.++.|.-..-....+.+.+..|-+.|.+++.+-+|..+.|++. |..++++|+++-..+.-+....
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~---- 96 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD---- 96 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc----
Confidence 39999999999999987643566677888999999999999999999999888 9999999998776665554321
Q ss_pred CCCceeEEEeEEecCC---eE-EEEcCCCcEEEEeCCCC--eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 250 SGPELCIWSLLSLRCG---TL-VSADSTGSVQFWDSRHG--TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~---~l-~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
....+.. ..++.. .+ ++.-.+|.+.++|.... +....-.-|..+|.++.+++-+..+++....|.|.-|..
T Consensus 97 --lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 97 --LPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred --CCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 1122211 222332 23 34456788999998743 334555679999999999999999999988999999998
Q ss_pred ecccCCCCCCCCCccccceEEE-----eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCC
Q 003467 324 SCESIGPNDGLSSSEVIKKWIY-----VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 398 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (817)
.. .....+ ....|.+ +...........++.++ |++.
T Consensus 174 e~-~~qfPr------~~l~~~~K~eTdLy~f~K~Kt~pts~Efs---------p~g~----------------------- 214 (558)
T KOG0882|consen 174 EG-PFQFPR------TNLNFELKHETDLYGFPKAKTEPTSFEFS---------PDGA----------------------- 214 (558)
T ss_pred CC-cccCcc------ccccccccccchhhcccccccCccceEEc---------cccC-----------------------
Confidence 74 111111 1111211 11112223445667776 7776
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 478 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~ 478 (817)
.+.+-+.|..|+++...+.+..+.......... +-+.. ...+-.+..+...
T Consensus 215 -qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~----------~q~ks--------~y~l~~VelgRRm---------- 265 (558)
T KOG0882|consen 215 -QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ----------YQPKS--------PYGLMHVELGRRM---------- 265 (558)
T ss_pred -cccccCcccEEEEEEeccchhhhhhhccchhhh----------hcccc--------ccccceeehhhhh----------
Confidence 777888999999999988765443221110000 00000 0000000000000
Q ss_pred ccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeec--------CC-----cccc----
Q 003467 479 STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ--------LP-----RKLQ---- 541 (817)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~--------~~-----~~~~---- 541 (817)
..-.++.......-+.+.|...|++|.+++--.|++.++.++. -.++ +.+.+ +. .+..
T Consensus 266 --averelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~-v~ri--~gk~e~ir~~~~sl~q~~~k~~~~~~~~ 340 (558)
T KOG0882|consen 266 --AVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNT-VVRI--LGKDEAIRFTRLSLYQGAQKSNLAALEV 340 (558)
T ss_pred --hHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCe-EEEE--eccchhhhhhhHHHHhhhhhccchhhhh
Confidence 0001122222233456779999999999999889999998621 1111 11100 00 0000
Q ss_pred ---ceeEEEEecCCCEEEEEecCCcEEEE
Q 003467 542 ---FAHSMIFSYDSSQLIIAGHDRRIYVV 567 (817)
Q Consensus 542 ---~i~~~~fspd~~~l~~~~~dg~i~v~ 567 (817)
.-..+.+-+|-..++++-....+++|
T Consensus 341 ~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 341 AASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhccCcccccCCCCeEEEeeeecceEEEE
Confidence 01123366777788888888888888
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-06 Score=81.98 Aligned_cols=263 Identities=15% Similarity=0.125 Sum_probs=155.4
Q ss_pred CCceeeeeeccCCCceEEEEECCCCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCc
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGG 79 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~ 79 (817)
|+.|...++..|...|..|+|||..+ +|.+++.+..|.|.|+.+.. +...+..+ ..+.+++|.-|.. +
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~--~~~wSC~wDlde~-----h 249 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY--NQIWSCCWDLDER-----H 249 (463)
T ss_pred CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc--CCceeeeeccCCc-----c
Confidence 56777888899999999999999877 78888999999999999875 45566555 7899999998875 4
Q ss_pred eEEEeeCCCeEEEEECCCCe-EEEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 80 RLFSSSIDGSVSEWDLYDLK-QKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 80 ~l~s~~~d~~i~vwd~~~~~-~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
.|..|-.+|.|.++|+...+ .+..+.+ ...+|..++.-+-+..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~---------------------------------- 295 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKI---------------------------------- 295 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccc----------------------------------
Confidence 58888889999999997543 2222222 2244555444333210
Q ss_pred CCCccccccccccCCEEEEEeCCCcEEEEEecCCC-ceeEeeccCCccceEEEEEEccCCCEEEE-eeCCC------cEE
Q 003467 157 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRSLPRVSGRVLSVTWSADGNMLYS-GSSDG------YIR 228 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg------~i~ 228 (817)
+..+.+|+....+ +..|++.-.. .+.. ..-.+..+...++.+.+-.+.++. .-.+. .|-
T Consensus 296 ----------f~~gglLv~~lt~--l~f~ei~~s~~~~p~-vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il 362 (463)
T KOG1645|consen 296 ----------FTSGGLLVFALTV--LQFYEIVFSAECLPC-VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFIL 362 (463)
T ss_pred ----------ccccceEEeeehh--hhhhhhhccccCCCc-ccccCCCcceeeeeecCccceEEEEecCCCCCccceeee
Confidence 1112355555554 4556665221 1111 111133556777777765454443 32210 011
Q ss_pred -EEECCCCceEEEEEeec-CCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 229 -SWDAKLGYEIYRITVGL-GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 229 -vwd~~~g~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
--|-.+|..+....... +... ..-..-..+.-.++. .+..+++.+.+.+||..+++.++++.. ..+|..++...
T Consensus 363 ~~~d~~dG~pVc~~r~~~~Gs~~-~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~ 440 (463)
T KOG1645|consen 363 GRIDFRDGFPVCGKRRTYFGSKQ-TKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPND 440 (463)
T ss_pred eeeccccCceeeeecccccCCcc-cccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc-Ccceeecceee
Confidence 11222344333332211 1100 000001112223344 356677788899999999999999976 47788777654
Q ss_pred -CC-CEEEEEccCCcEEEEEee
Q 003467 305 -SH-NRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 305 -~~-~~l~~~~~dg~i~iw~~~ 324 (817)
++ .+|++- .|..+++|..+
T Consensus 441 ~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 441 TNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cCCcchhhhe-ecceEEEEecC
Confidence 33 355554 45578888654
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=2.1e-08 Score=105.13 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=152.8
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-C
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-I 86 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~ 86 (817)
.|.-|...-+|+|||.+.++|++|...|.|+++|+.+|.. +....+| +.+|+-+.=+.||.. +++.+ .
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----e~s~ncH-~SavT~vePs~dgs~------~Ltsss~ 1164 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----EESVNCH-QSAVTLVEPSVDGST------QLTSSSS 1164 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc----ccccccc-ccccccccccCCcce------eeeeccc
Confidence 3466778999999999999999999999999999999983 5666666 899999999999986 44433 3
Q ss_pred C-CeEEEEECCC-CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 87 D-GSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 87 d-~~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
. -...+|++.+ +.+.+++.. -.++.|+...
T Consensus 1165 S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-------------------------------------------- 1196 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-------------------------------------------- 1196 (1516)
T ss_pred cCchHHHhccccccCccccccc----cceeehhhhH--------------------------------------------
Confidence 3 3578999864 444555542 3466777654
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeE-eeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIY-HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
+.-+.|+......|||++++..+.. .....+..-.=.+..|+|+.++++- || .+||++..+.++++..
T Consensus 1197 ------q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ 1265 (1516)
T KOG1832|consen 1197 ------QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQ 1265 (1516)
T ss_pred ------HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhh
Confidence 2444555556789999998876631 1111112223377889999887765 33 5899998888877751
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
.. .--.-.|+|.| .++.-+ .|||+++.++++.... -+-..+.|+..|+.++..
T Consensus 1266 --------ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~--Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1266 --------FT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS--LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred --------he-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc--ccceEEEeccCccchhhh
Confidence 22 22233688888 455443 5899999998877653 344668888888766543
No 313
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.59 E-value=0.00015 Score=70.61 Aligned_cols=163 Identities=10% Similarity=0.114 Sum_probs=93.5
Q ss_pred CcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc-cccceeEEEEecCCCEEEEEecCCcEEEEEccCCce--eeeec
Q 003467 503 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFT 579 (817)
Q Consensus 503 g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~--~~~~~ 579 (817)
..+.+.+.||.+.-+.++. .+... ......+.. .......-+++.++..++..+.+|.|+-.|+..... ...+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~--~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDA--DGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp TEEEEEETTSCEEEEEETS--TSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred CceEEEecCCceEEEEECC--CCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 3566678888888888875 23222 112122222 222333445666777777789999999999865432 22222
Q ss_pred cCcccccccCCCCCCceeEEEEccCCCEEEEEeCC----------CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCC
Q 003467 580 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN 649 (817)
Q Consensus 580 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~ 649 (817)
..... +.+..-..+.-.-+++++..+.|.+.-.. ..|.+||+.+++....++..+ ++.+|+.+.++.
T Consensus 225 ~~t~~-e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 225 LLTDA-EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDK 301 (342)
T ss_dssp SS-HH-HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS
T ss_pred ccCcc-ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCC
Confidence 10000 00000011223447787766666554222 158899999999888876544 688999999444
Q ss_pred CeEEEEe-cCCeEEEEEcCCCcc
Q 003467 650 NVLIITT-SSNQVYVFDVEAKQL 671 (817)
Q Consensus 650 ~~l~~~~-~d~~i~vwd~~~~~~ 671 (817)
.+|+..+ .++.+.+||..++++
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--E
T ss_pred cEEEEEcCCCCeEEEEeCcCCcE
Confidence 4665544 578999999999986
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.6e-06 Score=91.08 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=139.6
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
..|+|++++ +++||.|..+|.|.+.+..... .+...| ... ..+|.+ ++||+.||+|.|-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------~~~~~~-s~~------~~~Gey------~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP------KTNFDH-SSS------ILEGEY------VASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc------cccccc-ccc------ccCCce------EEEecCCCcEEEe
Confidence 567888888 8899999999999999876431 222333 121 556777 9999999999999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
.+-+.+...+++ ...++.+++++|+-.... .+.+
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~---------------------------------------------sk~f 132 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQ---------------------------------------------SKQF 132 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccchhhhh---------------------------------------------hhhe
Confidence 999988777766 568899999999832110 1489
Q ss_pred EEEeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCC
Q 003467 174 ALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 252 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~ 252 (817)
++|+..| +.++.-.= +..-. ..+..-.|.|.++.|. |+++|-++.+ -|++||..+++.+..+..+.... ..
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~--v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~--R~ 204 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDS--VVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSV--RP 204 (846)
T ss_pred eecCcce-EEEehhhhhcCccc--eeeecCccceEEEEec--CcEEEEecCC-CcEEEeccccceeeccCCCCCCC--Cc
Confidence 9999999 88775431 11110 2355667899999997 7788888777 58999999998888776443211 12
Q ss_pred ceeEEEeEEecCCeEEEEcCCCcEEEEeCC
Q 003467 253 ELCIWSLLSLRCGTLVSADSTGSVQFWDSR 282 (817)
Q Consensus 253 ~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~ 282 (817)
+..-..+.|.++.+|+.|-.| +|+|..++
T Consensus 205 e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 205 ELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 233456788888888888766 57777776
No 315
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.58 E-value=0.0023 Score=69.89 Aligned_cols=537 Identities=15% Similarity=0.097 Sum_probs=254.8
Q ss_pred ECCCCCeEEEEecCCcEEEEecC-CCCCCcE--EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC
Q 003467 21 TSADDSQVAAAREDGSLEIWLVS-PGTSGWH--CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD 97 (817)
Q Consensus 21 ~spdg~~la~~~~dg~i~iwd~~-~~~~~~~--~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 97 (817)
+.++|.+...|..+|.+.-.-+. +++..+- .....-|. ..-.+|+..-++| .|++||.-|.=.+-.+.+
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge-~siassi~~L~ng-------~lFvGS~~gdSqLi~L~~ 336 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGE-TSIASSINYLDNG-------VLFVGSRFGDSQLIKLNT 336 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCC-cchhhhhhcccCc-------eEEEeccCCceeeEEccc
Confidence 45577777788888877665544 4443333 23333343 4555666666665 389998876555555543
Q ss_pred CeEE-------EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 98 LKQK-------IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 98 ~~~~-------~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
-.-. .++. .-++|..+..-....+. +
T Consensus 337 e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~----------------------------------------------q 369 (1096)
T KOG1897|consen 337 EPDVGSYVVILETFV-NLGPIVDMCVVDLDRQG----------------------------------------------Q 369 (1096)
T ss_pred cCCCCchhhhhhhcc-cccceeeEEEEeccccC----------------------------------------------C
Confidence 2211 2222 33577777665443110 0
Q ss_pred CEEEEEe---CCCcEEEEEecCCCceeEeeccCCccceEEEEE--EccC-CCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 171 RRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT--WSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 171 ~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
+.+++++ .||.++|..-.-+-.......+.| -..++.+. ++++ ..+|+.+-.+ .-++..+. ++.......
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~-~e~ee~~~~- 445 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNIS-EEVEETEDP- 445 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceEEEEEc-cceEEeccc-
Confidence 2455544 589999986542222222234455 33455555 3332 1255544333 44555543 221111110
Q ss_pred cCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 245 LGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
+.......++.+. .+ .|+-..+ ..|++++-. ..+..+.. .+.++..+.+.+...++.++.++.+...+
T Consensus 446 ------gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~ 515 (1096)
T KOG1897|consen 446 ------GFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLE 515 (1096)
T ss_pred ------cccccCceEEEEccCCceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEE
Confidence 1222222222221 11 2222222 235666544 22333332 34455555556666788887877777666
Q ss_pred eecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 402 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 402 (817)
+..... .......-...|.|+.++ |-+.. +...++++
T Consensus 516 i~~~~l----------------~e~~~~~~e~evaCLDis---------p~~d~------------------~~~s~~~a 552 (1096)
T KOG1897|consen 516 IEDGGL----------------REVSHKEFEYEVACLDIS---------PLGDA------------------PNKSRLLA 552 (1096)
T ss_pred eeccce----------------eeeeeheecceeEEEecc---------cCCCC------------------CCcceEEE
Confidence 655431 111223345678898887 33320 00123777
Q ss_pred EecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC--CeEEEEEecccCCcccC--CCCCCCC
Q 003467 403 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESR--SSSGGHA 478 (817)
Q Consensus 403 s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~--~~~~g~~ 478 (817)
.|..+..+.+--.........+.....+.-+ ..+--..+-.|..++.++. +.+.-+.++........ ...-| .
T Consensus 553 VG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iP--RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG-t 629 (1096)
T KOG1897|consen 553 VGLWSDISMILTFLPDLILITHEQLSGEIIP--RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG-T 629 (1096)
T ss_pred EEeecceEEEEEECCCcceeeeeccCCCccc--hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC-C
Confidence 7777665544322211111111100011111 1111223334444444443 45554444443332211 11112 2
Q ss_pred ccceeeeeeecCCCCeEEEE------ecCCC------------------------cEEEEEcCCceEEEEeecCCCCCce
Q 003467 479 STSLLVQVKSKASRKIICST------ISNSG------------------------MLFAYSDHVKPSLFELKKGKVGQGE 528 (817)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~------~s~~g------------------------~~la~~~~~~i~l~~~~~~~~~~~~ 528 (817)
.|..+.++..+....+.|+. ++.++ ..++.++.+.+++..++. ...
T Consensus 630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~----iqk 705 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDE----IQK 705 (1096)
T ss_pred CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecc----hhh
Confidence 23345555544444433321 11111 235555666666666653 111
Q ss_pred EEEeeecCCccccceeEEEEecCCCEEEEEecCC--------------cEEEEEccCCceeeeeccCcccccccCCCCCC
Q 003467 529 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR--------------RIYVVDVSSSELLHTFTPCREEHDREIQPSEP 594 (817)
Q Consensus 529 ~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg--------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (817)
..+++ ++-+. ..+.+++.+....+++.+... .++++|-++.+.++..+-.+. ...-
T Consensus 706 l~irt--vpl~~-~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~-------E~~~ 775 (1096)
T KOG1897|consen 706 LHIRT--VPLGE-SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERN-------ETAL 775 (1096)
T ss_pred cceee--ecCCC-ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccc-------ceee
Confidence 11222 22222 466778877555555443211 366666666655544332100 0123
Q ss_pred ceeEEEEccC-CCEEEEEeC----------CCcEEEEECCCcceEEEEe-cCCCCCeEEEEecCCCCCeEEEEecCCeEE
Q 003467 595 PITKMFTSSD-GQWLAAVNC----------FGDVYIFNLEIQRQHWFIS-RLEGASVTAAGFPPQNNNVLIITTSSNQVY 662 (817)
Q Consensus 595 ~i~~l~~s~d-g~~la~~~~----------dg~i~vwd~~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~ 662 (817)
.|.+..|..| +.++++|.. .|.|.||..+..+....+. ..-.+.+.++.-- ++++|| +-...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEE
Confidence 3555568888 778888753 5889999887733322221 1112455555443 455544 4567899
Q ss_pred EEEcCCCccccchhcccCccCcchhcCCCceeEEEECCC
Q 003467 663 VFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 663 vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~ 701 (817)
+|+..+++. .+.-..+..++..+.....
T Consensus 852 Lye~t~~~e-----------Lr~e~~~~~~~~aL~l~v~ 879 (1096)
T KOG1897|consen 852 LYEWTTERE-----------LRIECNISNPIIALDLQVK 879 (1096)
T ss_pred EEEccccce-----------ehhhhcccCCeEEEEEEec
Confidence 999988843 3333445567777777664
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.55 E-value=0.00013 Score=78.94 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=92.4
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCC---ccceEE--EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVL--SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~--~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
+..+..++.++.|+-.|..+++.+-....-.. ....+. .++.. ++..++.++.+|.|.-+|.++|+.+.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34777888889999999988776532111111 000111 11221 2267888889999999999999999888742
Q ss_pred cCCCCCCCceeEE-EeEEecCCeEEEEc---------CCCcEEEEeCCCCeEEEEeecCccC------------------
Q 003467 245 LGGLGSGPELCIW-SLLSLRCGTLVSAD---------STGSVQFWDSRHGTLLQAHSFHKGD------------------ 296 (817)
Q Consensus 245 ~~~~~~~~~~~v~-~v~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~h~~~------------------ 296 (817)
... .....+. +..+. ++.++.++ .+|.+..+|..+|+.+..+......
T Consensus 140 ~~~---~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 140 DQV---PPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCc---CcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 110 0000111 11222 35555553 3678999999999998877542111
Q ss_pred --e-eEEEEecCCCEEEEEccCC------------------cEEEEEeeccc
Q 003467 297 --V-NALAAAPSHNRVFSTGSDG------------------QVILYKASCES 327 (817)
Q Consensus 297 --v-~~l~~s~~~~~l~~~~~dg------------------~i~iw~~~~~~ 327 (817)
+ ...++.+.+..++.++.++ .|.-+|..+++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 1 1345555667788887665 67777877776
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=4.7e-07 Score=85.10 Aligned_cols=142 Identities=16% Similarity=0.228 Sum_probs=114.0
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC-----ceEEEEEeecC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-----YEIYRITVGLG 246 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-----~~~~~~~~~~~ 246 (817)
+-++.+.+..|-+-+++++.. ..|. .++.|.++.|...+..+..|+.+|.|...|++.+ .+.+++-
T Consensus 226 yhfs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---- 296 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---- 296 (425)
T ss_pred eeecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE----
Confidence 346667778888899987654 3444 5678999999998999999999999999999864 4555554
Q ss_pred CCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeE---EEEeecCccCeeE--EEEecCCCEEEEEccCCcEE
Q 003467 247 GLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNA--LAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~--l~~s~~~~~l~~~~~dg~i~ 319 (817)
|...|+++.... ++ .|++.+.+|+|++||.+.-++ +.++.+|...-.- +-..+....++++|.|...+
T Consensus 297 -----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 297 -----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred -----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 888999988886 44 789999999999999987666 8888888654333 33456677899999999999
Q ss_pred EEEeeccc
Q 003467 320 LYKASCES 327 (817)
Q Consensus 320 iw~~~~~~ 327 (817)
+|.+..+.
T Consensus 372 iWsl~~gh 379 (425)
T KOG2695|consen 372 IWSLDSGH 379 (425)
T ss_pred EEecccCc
Confidence 99999887
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.4e-06 Score=84.91 Aligned_cols=255 Identities=14% Similarity=0.069 Sum_probs=171.0
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CCeE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DGSV 90 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~i 90 (817)
|.+.|+.+..+ -.+++.+|+.||.++.|--..-. .......+..| .+.|.+++.+.++.+ +.|.+. |..+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-GvEfVKhFraH-L~~I~sl~~S~dg~L------~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-GVEFVKHFRAH-LGVILSLAVSYDGWL------FRSVEDPDHSV 78 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-ceeehhhhHHH-HHHHHhhhcccccee------EeeccCcccce
Confidence 56667766554 35689999999999999865411 22234455555 678999999999976 888777 9999
Q ss_pred EEEECCCCeEEEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 91 SEWDLYDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
+++|+++-..+..++- ..+.+. ...++.. ..
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a~-wv~skGd-~~--------------------------------------------- 111 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFAE-WVTSKGD-KI--------------------------------------------- 111 (558)
T ss_pred eEEEeeccchhhhcccccCCCceE-EecCCCC-ee---------------------------------------------
Confidence 9999987665533321 112111 1122221 10
Q ss_pred cCCEEEE-EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC------CceEEEE
Q 003467 169 EDRRVAL-ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL------GYEIYRI 241 (817)
Q Consensus 169 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~------g~~~~~~ 241 (817)
..+|+ .-++|.+.++|-..... .....-.-|..+|.++.+++-++.+++....|.|.-|.... ++....+
T Consensus 112 --s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 112 --SLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred --eeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 14444 34678999999763321 11133345899999999999999999999999999999862 1121122
Q ss_pred Eee--cCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec--------------------------
Q 003467 242 TVG--LGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-------------------------- 292 (817)
Q Consensus 242 ~~~--~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------- 292 (817)
... +-+. ........++.|+|++ .+.+-..|..|++++.++|++++.+..
T Consensus 189 K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmav 267 (558)
T KOG0882|consen 189 KHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAV 267 (558)
T ss_pred cccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhH
Confidence 110 0000 1345567789999999 788888999999999999877655321
Q ss_pred ------Cc-cCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 293 ------HK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 293 ------h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
|. ..-..+.|...|++|+-++.=| |++.++.+..
T Consensus 268 erelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 268 ERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred HhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 11 1234678888899999887765 8889988876
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=3.1e-07 Score=86.30 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=108.1
Q ss_pred EEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 82 FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
|+.|.+..|-+-|+++|-. +.+. ..+.|.++.|...+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~----------------------------------------- 264 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD----------------------------------------- 264 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-----------------------------------------
Confidence 6667777788888887653 3333 45667777776644
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCc--eeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCce-
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDE--LIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE- 237 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~- 237 (817)
+++..||..|.|..+|+..+.+ ... ...--|...|+++..-. ++.+|.+.+.+|.|.+||.+.-++
T Consensus 265 ---------nLv~~GcRngeI~~iDLR~rnqG~~~~-a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 265 ---------NLVFNGCRNGEIFVIDLRCRNQGNGWC-AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred ---------CeeEecccCCcEEEEEeeecccCCCcc-eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 5999999999999999985411 000 22235888999988776 788999999999999999987666
Q ss_pred --EEEEEeecCCCCCCCceeEEEeEEe---cCCeEEEEcCCCcEEEEeCCCCeEEEEeecC
Q 003467 238 --IYRITVGLGGLGSGPELCIWSLLSL---RCGTLVSADSTGSVQFWDSRHGTLLQAHSFH 293 (817)
Q Consensus 238 --~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 293 (817)
++.+. +|-..-.-+-+. .+|.+++++.|...+||.++.|.++.+++..
T Consensus 335 ~~V~qYe--------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 335 KSVMQYE--------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cceeeee--------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555 333222222222 2447899999999999999999999888653
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00079 Score=61.52 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=92.6
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVL 104 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 104 (817)
..++..|+..+.+.--|..+|...|+.+. ..+|++-+.- -|++ ++.|...|.+.+-+..+|.+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il------g~RiE~sa~v-vgdf------VV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------GVRIECSAIV-VGDF------VVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh------CceeeeeeEE-ECCE------EEEEEccCcEEEEEecchhheeee
Confidence 45677788889999999999987664433 2456665554 4555 899999999999999999888777
Q ss_pred eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEE
Q 003467 105 QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRI 184 (817)
Q Consensus 105 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 184 (817)
..-+.-=......+++ .++..|+.|+..+.
T Consensus 90 ~~~~~vk~~a~~d~~~--------------------------------------------------glIycgshd~~~ya 119 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDG--------------------------------------------------GLIYCGSHDGNFYA 119 (354)
T ss_pred eehhhhccceEEcCCC--------------------------------------------------ceEEEecCCCcEEE
Confidence 6433222223334444 48999999999999
Q ss_pred EEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 185 YRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 185 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
.|..+...+ ...+--.+...+-+..|-...|..+...|.+.--+..
T Consensus 120 lD~~~~~cV---ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 120 LDPKTYGCV---YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred ecccccceE---EecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 999865554 2232222333344555633344444444554444433
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00033 Score=75.85 Aligned_cols=242 Identities=19% Similarity=0.258 Sum_probs=135.0
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCC-CCCcE-E-EEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGD-PKSRI-S-SLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQK 101 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~-~~~~V-~-~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 101 (817)
+..+.++..++.|.-.|..+|+..|......... ....+ . .++.. ++ .+++.++.++.|.-+|.++|+.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~------~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP------RKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC------CeEEEecCCCeEEEEECCCCCEe
Confidence 4456677778999999999999877653322100 00000 0 11111 11 23888889999999999999998
Q ss_pred EEEeecCceEEE--EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe--
Q 003467 102 IVLQSIDFSIWQ--MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-- 177 (817)
Q Consensus 102 ~~~~~~~~~i~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 177 (817)
..+......... +.-+|- +. +..+++++
T Consensus 134 W~~~~~~~~~~~~~i~ssP~-----------------------------------------------v~-~~~v~vg~~~ 165 (488)
T cd00216 134 WKFGNNDQVPPGYTMTGAPT-----------------------------------------------IV-KKLVIIGSSG 165 (488)
T ss_pred eeecCCCCcCcceEecCCCE-----------------------------------------------EE-CCEEEEeccc
Confidence 777643221000 100110 00 01344443
Q ss_pred -------CCCcEEEEEecCCCceeEeeccCC----------------cc-ceE-EEEEEccCCCEEEEeeCCC-------
Q 003467 178 -------DDGCVRIYRITDSDELIYHRSLPR----------------VS-GRV-LSVTWSADGNMLYSGSSDG------- 225 (817)
Q Consensus 178 -------~dg~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~v~~s~dg~~l~s~~~dg------- 225 (817)
.+|.|+.+|..+++.+-....... +. ..| .+.++.+.+..++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~ 245 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGG 245 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCC
Confidence 357788888877765532211110 00 111 1345566677888887665
Q ss_pred -----------cEEEEECCCCceEEEEEeecCCCC--CCCce-eEEEeEEecCC----eEEEEcCCCcEEEEeCCCCeEE
Q 003467 226 -----------YIRSWDAKLGYEIYRITVGLGGLG--SGPEL-CIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 226 -----------~i~vwd~~~g~~~~~~~~~~~~~~--~~~~~-~v~~v~~~~~~----~l~s~~~dg~i~iwd~~~~~~~ 287 (817)
.|.-.|..+|+.+........... ..... .+..+. .-++ .++.++.+|.+...|.++|+.+
T Consensus 246 ~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 246 RRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred ccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 799999999999988864211000 01111 111111 0123 4778889999999999999998
Q ss_pred EEeecCccCeeEEEEecCCCEEEEEc------------------cCCcEEEEEeeccc
Q 003467 288 QAHSFHKGDVNALAAAPSHNRVFSTG------------------SDGQVILYKASCES 327 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~~~~l~~~~------------------~dg~i~iw~~~~~~ 327 (817)
...... ...++.+| ..++.+. .+|.+.-.|+.+++
T Consensus 325 W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 325 SARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred eEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 776432 11233444 3344432 35677777777776
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=0.0018 Score=66.91 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=62.2
Q ss_pred cceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEE
Q 003467 541 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 620 (817)
Q Consensus 541 ~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw 620 (817)
..+.+.+++|+.+.|+.|+.||.|.+||...+....+ + ..-.++.++|+|+|..+++|+..|.+.+|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k------------a~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K------------AEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e------------ecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 3799999999999999999999999999876533222 2 45668999999999999999999999999
Q ss_pred ECCCcce
Q 003467 621 NLEIQRQ 627 (817)
Q Consensus 621 d~~~~~~ 627 (817)
|+.-...
T Consensus 327 D~ALspi 333 (545)
T PF11768_consen 327 DMALSPI 333 (545)
T ss_pred EeecCcc
Confidence 9864443
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=6.8e-07 Score=58.07 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=37.1
Q ss_pred CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 284 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 284 ~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
|+++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=2.1e-05 Score=82.97 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=87.7
Q ss_pred EEEEccCCCEEEEeeC----CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC
Q 003467 208 SVTWSADGNMLYSGSS----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR 282 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~----dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~ 282 (817)
-..|+|...++++++- .|.|.||- .+|+.....+ ..-.+.+++|+|.. .|+.|-.-|.+.+|...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence 3568888888887764 47888885 5676444333 33446679999998 68888889999999999
Q ss_pred CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 283 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 283 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
+.+.......|..+|..+.||++|+.++++..-|.|.+|....
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 8777777778999999999999999999999999999999874
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5e-07 Score=58.69 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=36.0
Q ss_pred CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 572 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
|++++++.+ |...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~-----------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-----------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-----------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-----------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778888 999999999999999999999999999997
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.3e-05 Score=83.22 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=129.1
Q ss_pred EECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC-----eEEEEE
Q 003467 20 ATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG-----SVSEWD 94 (817)
Q Consensus 20 a~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~-----~i~vwd 94 (817)
++++.+..+|.|+.+|.|.+.|-.-. ....+..+..+-|..|-...+..+ |++.+.|+ .|++|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-----~~~~fqa~~~siv~~L~~~~~~~~------L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-----LIRGFQAYEQSIVQFLYILNKQNF------LFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-----eeehheecchhhhhHhhcccCceE------EEEEeecCCCCceEEEEec
Confidence 35788999999999999988874321 234555553332444444333345 99988764 499999
Q ss_pred CCCC------eEE--EEEee-----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 95 LYDL------KQK--IVLQS-----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 95 ~~~~------~~~--~~~~~-----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
++.- .++ ..+.. ...++.+++++.+-
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l----------------------------------------- 137 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL----------------------------------------- 137 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-----------------------------------------
Confidence 8642 223 11222 23566777777764
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEec--CCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce--
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRIT--DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-- 237 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~-- 237 (817)
..+|+|-.+|.|..+.-. ...... ..-...-..+|+.+++..+++.++.+..-..|.+|.+. |+.
T Consensus 138 ---------~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~ 206 (933)
T KOG2114|consen 138 ---------KTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPS 206 (933)
T ss_pred ---------cEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcc
Confidence 489999999999988533 111111 01222345689999999999874444444589999997 554
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee-cCc
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHK 294 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~ 294 (817)
...+. .+...+.|..+++.. .+++++.. .+.+||......-..+. +|.
T Consensus 207 ~~~ld--------~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 207 LKVLD--------NNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred eeeec--------cCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence 22233 567778888888665 47766654 58999988544444454 443
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=7.7e-05 Score=78.76 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=101.3
Q ss_pred eeeeeecCCCCeEEEEecCCCcEEEEEc---CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe
Q 003467 483 LVQVKSKASRKIICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG 559 (817)
Q Consensus 483 ~~~~~~~~~~~i~~~~~s~~g~~la~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~ 559 (817)
..++.... +...++++++|+++.++. .....+-.+...+.. .+.. .... ..-++.+||++..+
T Consensus 228 ~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vv---fni~------~iea~vkdGK~~~V-- 293 (635)
T PRK02888 228 AWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVV---FNIA------RIEEAVKAGKFKTI-- 293 (635)
T ss_pred EEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEE---EchH------HHHHhhhCCCEEEE--
Confidence 34444443 456678999999987753 211222222211100 0000 0000 00134568887776
Q ss_pred cCCcEEEEEccC-----CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEECCCcce------
Q 003467 560 HDRRIYVVDVSS-----SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ------ 627 (817)
Q Consensus 560 ~dg~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~------ 627 (817)
.++.|.++|..+ .+.+..+.. ......+++||||+++++++ .+.+|.|+|+++.+.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPV------------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPV------------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEEC------------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 367899999987 456666663 66788899999999987776 488999999988663
Q ss_pred ------EEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 628 ------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 628 ------~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
...++. +..+...+|.+ +|....+...|.+|..||++.
T Consensus 362 ~~~~~vvaevev--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 223332 34566789999 888888888999999999976
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=4.8e-06 Score=88.57 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=134.5
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.+++.|+....+...|+.+++..+......+.|.-|..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---------------------------------------- 187 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---------------------------------------- 187 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEecC----------------------------------------
Confidence 4577777777788888888887777665555566665542
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC---------CCcEEE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---------DGYIRS 229 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~---------dg~i~v 229 (817)
+.+.+|...|+|.+-|..+.+.. +++..|++.|..+.. .|+.|++++. |.-|+|
T Consensus 188 ------------r~lf~G~t~G~V~LrD~~s~~~i---ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 188 ------------RNLFCGDTRGTVFLRDPNSFETI---HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred ------------cEEEeecccceEEeecCCcCcee---eeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 48999999999999998866555 899999999987665 5889999875 556899
Q ss_pred EECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCC---CC-eEEEEeecCccCeeEEEEe
Q 003467 230 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR---HG-TLLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 230 wd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~---~~-~~~~~~~~h~~~v~~l~~s 303 (817)
||++..+.+.-+... ..-.-+.|.|.- +++.++..|...+-|.. .- ..+..+......+..++++
T Consensus 251 YDLRmmral~PI~~~---------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFP---------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhhhhccCCcccc---------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence 999988777666532 122446677765 78889999999999833 22 1123333344569999999
Q ss_pred cCCCEEEEEccCCcEEEEE
Q 003467 304 PSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 304 ~~~~~l~~~~~dg~i~iw~ 322 (817)
++++.++.|..+|.|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999998
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.39 E-value=0.00062 Score=70.21 Aligned_cols=252 Identities=12% Similarity=0.135 Sum_probs=142.1
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCC---------------------------------------CcEEEEEE
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTS---------------------------------------GWHCQLTV 55 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~---------------------------------------~~~~~~~~ 55 (817)
.|+++.|+++..-||+|...|.|.||.+...+. .+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999999999999999999986542210 01111222
Q ss_pred cCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe--e------cCceEEEEeeecCCCccceee
Q 003467 56 HGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ--S------IDFSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 56 ~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~------~~~~i~~~~~s~~~~~~~~~~ 127 (817)
+.. .+.|++++.|.-| + +|.|..+|.+.|.|+.....+..-. . ....|.++.|+.-.-
T Consensus 83 ~~~-~g~vtal~~S~iG-F------vaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~------ 148 (395)
T PF08596_consen 83 DAK-QGPVTALKNSDIG-F------VAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL------ 148 (395)
T ss_dssp ----S-SEEEEEE-BTS-E------EEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-------
T ss_pred ecc-CCcEeEEecCCCc-E------EEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec------
Confidence 222 6899999998655 3 8888899999999998887776532 1 123566777763110
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEec--CCCce--eEeeccCCcc
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRIT--DSDEL--IYHRSLPRVS 203 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~--~~~~~~~~h~ 203 (817)
..++.. ...|++|+..|.+.+|.+. .+... .+......+.
T Consensus 149 -------------------------~~D~yS-----------Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~ 192 (395)
T PF08596_consen 149 -------------------------GGDGYS-----------SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD 192 (395)
T ss_dssp -------------------------TTSSSE-----------EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS
T ss_pred -------------------------CCCccc-----------ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC
Confidence 000000 0289999999999999886 22222 1222223566
Q ss_pred ceEEEEE-EccCC--------------------CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 204 GRVLSVT-WSADG--------------------NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 204 ~~v~~v~-~s~dg--------------------~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
++|..+. |+.+. ..++..+.+..++++...+.+...+.. ........+.+.
T Consensus 193 ~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv 264 (395)
T PF08596_consen 193 SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVV 264 (395)
T ss_dssp ----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEE
T ss_pred CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEE
Confidence 7777666 43221 123444456699999998888776665 233344444453
Q ss_pred -----cCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc----cCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 263 -----RCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK----GDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 263 -----~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
..+ .|++-..+|.|+++.+..-+.+..+..+. ..+...+++++|..++-.+. ..+.++.+-.
T Consensus 265 ~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv~~ 336 (395)
T PF08596_consen 265 PTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSVWG 336 (395)
T ss_dssp EEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEEES
T ss_pred eecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEEEc
Confidence 233 68888999999999999988887776532 23556777888886665544 3566665544
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.1e-05 Score=73.40 Aligned_cols=271 Identities=12% Similarity=0.077 Sum_probs=153.8
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
+++.+..+.+..+.+..|...|..++|||..+ .+..++.+..|.+.|+.+.. .+.....+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----------------~vssy~a~-~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----------------VVSSYIAY-N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-----------------eeeheecc-C
Confidence 66777766777777888899999999999887 67788999999999999877 55566666 6
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCC-
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV- 433 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~- 433 (817)
.+.+.+|. -+. ..++..|-..|.|.+||++................+
T Consensus 237 ~~wSC~wD---------lde-----------------------~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv 284 (463)
T KOG1645|consen 237 QIWSCCWD---------LDE-----------------------RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPV 284 (463)
T ss_pred Cceeeeec---------cCC-----------------------cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcc
Confidence 78888875 222 358999999999999999875433211111000000
Q ss_pred -ceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cC
Q 003467 434 -PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DH 511 (817)
Q Consensus 434 -~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~ 511 (817)
....+..-...+.+-+++.....+..|.+....... ..+.++. ......+++..+-.+.+..+ ..
T Consensus 285 ~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~-----------p~vlele--~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 285 HKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECL-----------PCVLELE--PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred eeecccCccccccccceEEeeehhhhhhhhhccccCC-----------CcccccC--CCcceeeeeecCccceEEEEecC
Confidence 001111113334566666666777778776544321 1112221 11222333333322333332 11
Q ss_pred --C--ceE--EEEeecCCCCCceEEEeeecCCcccc---ceeEEEEecCCCEEEEE-ecCCcEEEEEccCCceeeeeccC
Q 003467 512 --V--KPS--LFELKKGKVGQGEWIINKRQLPRKLQ---FAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 512 --~--~i~--l~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~fspd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~ 581 (817)
+ .++ +-+.+. ..+..+|..+......... .-..+.-.+|.++++.. .....+.+||..+++.++++..
T Consensus 352 ~pn~p~~r~il~~~d~-~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~- 429 (463)
T KOG1645|consen 352 NPNFPQSRFILGRIDF-RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL- 429 (463)
T ss_pred CCCCccceeeeeeecc-ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeeccc-
Confidence 0 000 111111 2233333322211110000 11122224566666554 4457899999999999999984
Q ss_pred cccccccCCCCCCceeEEEEcc-C-CCEEEEEeCCCcEEEEECC
Q 003467 582 REEHDREIQPSEPPITKMFTSS-D-GQWLAAVNCFGDVYIFNLE 623 (817)
Q Consensus 582 ~~~~~~~~~~~~~~i~~l~~s~-d-g~~la~~~~dg~i~vwd~~ 623 (817)
..+|..++... + +.||++-. |..++||..+
T Consensus 430 -----------~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 430 -----------SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred -----------CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 67788777543 2 34676665 4458888654
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.0032 Score=61.63 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=57.9
Q ss_pred ceeEEEEecCCCEEEEEecCC----------cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEE
Q 003467 542 FAHSMIFSYDSSQLIIAGHDR----------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAA 610 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~ 610 (817)
.-..+++++..++|++.-..| .|.++|+.+++.+..+.. ..++.+|++|.|.+ +|.+
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------EEEESEEEEESSSS-EEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------CCccceEEEccCCCcEEEE
Confidence 345678888777776653222 588999999999999984 55788999999888 5544
Q ss_pred E-eCCCcEEEEECCCcceEEEEecC
Q 003467 611 V-NCFGDVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 611 ~-~~dg~i~vwd~~~~~~~~~~~~~ 634 (817)
. ..++.+.|||..+++....+...
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE---
T ss_pred EcCCCCeEEEEeCcCCcEEeehhcc
Confidence 4 45789999999999988777644
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=3.4e-05 Score=80.33 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=108.9
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEE-EeecCceEEEEeeecCCCccceeeccCc
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSD 131 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~~~~~~~~ 131 (817)
+.+++.+...|.--+++..+++ |+.|+..|.+.+++-..+..... ..+-.+.+..+.++++.
T Consensus 26 ~~~~~~~~~~v~lTc~dst~~~------l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e----------- 88 (726)
T KOG3621|consen 26 LLQPGFFPARVKLTCVDATEEY------LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE----------- 88 (726)
T ss_pred hhccccCcceEEEEEeecCCce------EEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-----------
Confidence 4455555667777778888888 99999999999999887765432 22334455566666665
Q ss_pred cccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc--eeEeeccC-CccceEEE
Q 003467 132 HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE--LIYHRSLP-RVSGRVLS 208 (817)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~-~h~~~v~~ 208 (817)
.++|+|+..|.|.++-+..... +.+...+. .|+.+|++
T Consensus 89 ---------------------------------------~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTa 129 (726)
T KOG3621|consen 89 ---------------------------------------YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTA 129 (726)
T ss_pred ---------------------------------------HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEE
Confidence 3788899999999998874322 22223333 47899999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCC----ceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC
Q 003467 209 VTWSADGNMLYSGSSDGYIRSWDAKLG----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS 272 (817)
Q Consensus 209 v~~s~dg~~l~s~~~dg~i~vwd~~~g----~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~ 272 (817)
++|++|+..+++|...|.|..-.+.+. ...+.+. .....|..+.+...-.|++...
T Consensus 130 l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il--------~~ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 130 LEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL--------SEDSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred EEecccccEEeecCCCceEEEEEechhhhhccccceee--------ccCcceEEeecccceehHhhhh
Confidence 999999999999999999998888761 1122222 4566777777764444554443
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=3.1e-07 Score=96.65 Aligned_cols=201 Identities=10% Similarity=0.092 Sum_probs=144.5
Q ss_pred EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCc
Q 003467 52 QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSD 131 (817)
Q Consensus 52 ~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~ 131 (817)
..+++.+ ....+|++|+-+.+. |+.|+..|.|+++++.+|.......+|+..|+.+.-+.+|..+
T Consensus 1094 w~~frd~-~~~fTc~afs~~~~h------L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~-------- 1158 (1516)
T KOG1832|consen 1094 WRSFRDE-TALFTCIAFSGGTNH------LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQ-------- 1158 (1516)
T ss_pred chhhhcc-ccceeeEEeecCCce------EEeeeccceEEEEEccCccccccccccccccccccccCCccee--------
Confidence 3456665 688999999999887 9999999999999999999999999999999999999888532
Q ss_pred cccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEE
Q 003467 132 HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW 211 (817)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 211 (817)
+..++...-...+|++..-... .+++. .-.++.|
T Consensus 1159 ----------------------------------------Ltsss~S~PlsaLW~~~s~~~~--~Hsf~----ed~~vkF 1192 (1516)
T KOG1832|consen 1159 ----------------------------------------LTSSSSSSPLSALWDASSTGGP--RHSFD----EDKAVKF 1192 (1516)
T ss_pred ----------------------------------------eeeccccCchHHHhccccccCc--ccccc----ccceeeh
Confidence 2222333346789998632222 13333 3457888
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 212 SADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 212 s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
+.....-+.|+......+||++++..+.++..+.. +....-+...|+|+..|+-- || .+||.+..+.++.|.
T Consensus 1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIln--dG--vLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLILN--DG--VLWDVRIPEAIHRFD 1264 (1516)
T ss_pred hhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEee--Cc--eeeeeccHHHHhhhh
Confidence 87655555555556899999999998877543221 12223367889999876653 33 589999887777775
Q ss_pred cCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 292 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 292 ~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
..+ .-..-.|+|.|+.++..+ -+||+.+..
T Consensus 1265 ~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1265 QFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred hhe-ecccccccCCCceEEeec-----hhhhhHHHH
Confidence 544 233457999999888765 489988865
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00016 Score=77.06 Aligned_cols=128 Identities=7% Similarity=0.010 Sum_probs=87.9
Q ss_pred CCeEEEEecCCCcEEEEE-cCCceEEEEeecC-CCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEc
Q 003467 492 RKIICSTISNSGMLFAYS-DHVKPSLFELKKG-KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 569 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~ 569 (817)
..+.++++|.+-+.+|+| ++|.|..+.=+.. +.+.+. .-......+|+.++|..|++.++.+.....|.+|.+
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 568889999998999998 7788887753321 112211 112223448999999999988444444566999998
Q ss_pred cCCce-eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 003467 570 SSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG 636 (817)
Q Consensus 570 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~ 636 (817)
....+ +..+.. |.....|..+++....+++++..+ +.+|+.+..+..+.+...+.
T Consensus 201 ~gr~p~~~~ld~-----------~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 201 SGRTPSLKVLDN-----------NGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred cCCCcceeeecc-----------CCccceeeecCCCCccEEEecCce-EEEEcCCCcceeeeecCCCe
Confidence 73332 344555 788899999988766455555444 99999998888888875553
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=9e-05 Score=78.38 Aligned_cols=139 Identities=19% Similarity=0.153 Sum_probs=105.5
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
++.-.+..++-|+-+|.|++++... .. +....|... ..+|.++++|+.||+|.|-.+-+++....+.
T Consensus 44 ~~av~~~~~~~GtH~g~v~~~~~~~-~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-- 110 (846)
T KOG2066|consen 44 CCAVHDKFFALGTHRGAVYLTTCQG-NP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-- 110 (846)
T ss_pred HHHhhcceeeeccccceEEEEecCC-cc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence 3344467999999999999999863 22 222233333 6689999999999999999999998887775
Q ss_pred cCCCCCCCceeEEEeEEecC------CeEEEEcCCCcEEEEeCCC-CeEE-EEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 245 LGGLGSGPELCIWSLLSLRC------GTLVSADSTGSVQFWDSRH-GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~------~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
...++.+++++|+ +++++|+..| +.++.-+- |... ..+....++|.++.|. |++++-+..+|
T Consensus 111 -------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 111 -------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred -------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC
Confidence 6678999999998 2699999999 77765432 1111 1355567899999996 78888887775
Q ss_pred cEEEEEeeccc
Q 003467 317 QVILYKASCES 327 (817)
Q Consensus 317 ~i~iw~~~~~~ 327 (817)
|++||....+
T Consensus 181 -v~vyd~~~~~ 190 (846)
T KOG2066|consen 181 -VKVYDTPTRQ 190 (846)
T ss_pred -cEEEeccccc
Confidence 8999998877
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00025 Score=74.17 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=87.2
Q ss_pred ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEe
Q 003467 202 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD 280 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd 280 (817)
+...|.--+++..+++++.|++-|.+.+|+-..|.. ..++.. +....+..+..+++. .++.|+..|.|.++-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hccccc------CccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 344565566677889999999999999999655543 344321 355566666777777 577888889999998
Q ss_pred CCCCeE---EEE--e-ecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 281 SRHGTL---LQA--H-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 281 ~~~~~~---~~~--~-~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
++.+.. +.. . +.|...|+|++|++|+..+++|...|+|..-.++.
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 775322 111 1 23678899999999999999999999999988877
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.0018 Score=66.92 Aligned_cols=105 Identities=11% Similarity=0.195 Sum_probs=76.1
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
....|.+.+++|+...|+.|+.||.|.+||...+.....- ..-.++.++|+| +|.++++|+.-|.+.+||+.-..+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k---a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK---AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence 6789999999999999999999999999999877544321 224689999999 999999999999999999854422
Q ss_pred c-----c-chhcccCccCcchhcCCCceeEEEECCC
Q 003467 672 G-----E-WSMQHTFVLPRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 672 ~-----~-ws~~~~~~~~~~~~~~~~~v~~l~f~p~ 701 (817)
. + -.......+ ..+..+......+.|.+.
T Consensus 334 ~~qLlsEd~~P~~~L~L-s~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 334 KMQLLSEDATPKSTLQL-SKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred ceeeccccCCCccEEee-ehhccCcchhheeEeccC
Confidence 1 0 000011111 123345566778888854
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.19 E-value=0.0015 Score=62.23 Aligned_cols=207 Identities=16% Similarity=0.179 Sum_probs=116.5
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEE-eeCCCeEEEEECCCCeEEEEEeecC-ceEEEEeeecCCCccceeeccC
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFS-SSIDGSVSEWDLYDLKQKIVLQSID-FSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
+.++|- ...+++|+|.|+... |++ ....+.|...+. +|+.++++.-.+ +....+++..++
T Consensus 15 ~~l~g~-~~e~SGLTy~pd~~t------LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~---------- 76 (248)
T PF06977_consen 15 KPLPGI-LDELSGLTYNPDTGT------LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG---------- 76 (248)
T ss_dssp EE-TT---S-EEEEEEETTTTE------EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT----------
T ss_pred eECCCc-cCCccccEEcCCCCe------EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC----------
Confidence 456666 456999999998764 555 556788888886 478888876544 556777887666
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-CCCcEEEEEecCCC-ce--eEee--c--cC-C
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-DDGCVRIYRITDSD-EL--IYHR--S--LP-R 201 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~--~~~~--~--~~-~ 201 (817)
.++... .++.+.++++.... .+ .... . +. .
T Consensus 77 -----------------------------------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (248)
T PF06977_consen 77 -----------------------------------------RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNK 115 (248)
T ss_dssp -----------------------------------------EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S--
T ss_pred -----------------------------------------EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccC
Confidence 455555 48899999984221 11 1001 1 11 3
Q ss_pred ccceEEEEEEccCCCEEEEeeCCCcEEEEECCC---CceEEEEEe-ecCCCCCCCceeEEEeEEecCC--eEEEEcCCCc
Q 003467 202 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL---GYEIYRITV-GLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS 275 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~---g~~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~ 275 (817)
+...+-.++|+|.++.|+.+....-..+|.+.. +..+..... .... .......+.++.+.|.. .++..+....
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCCe
Confidence 445689999999999888888877777777653 222222221 1110 11234457889999876 6777888889
Q ss_pred EEEEeCCCCeEEEEeecCc---------cCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 276 VQFWDSRHGTLLQAHSFHK---------GDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
|..+| .+|+.+..+.-.. ...-.++|.++|+ |+..+.-+..++|
T Consensus 195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 99999 4588776654332 3467899999996 5555566655544
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.17 E-value=0.0015 Score=67.63 Aligned_cols=227 Identities=17% Similarity=0.106 Sum_probs=122.3
Q ss_pred CCCCCeEEEE---------ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 22 SADDSQVAAA---------REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 22 spdg~~la~~---------~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
|||+++++.. +..+.+.|||+.+++ ...+... ...+....|||+|+. ++... ++.|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-----~~~l~~~-~~~~~~~~~sP~g~~------~~~v~-~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-----ITPLTPP-PPKLQDAKWSPDGKY------IAFVR-DNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-----EEESS-E-ETTBSEEEE-SSSTE------EEEEE-TTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-----eEECcCC-ccccccceeecCCCe------eEEEe-cCceEE
Confidence 7999999885 234679999999875 2333322 467889999999987 77665 567999
Q ss_pred EECCCCeEEEEEeecC------------------ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 93 WDLYDLKQKIVLQSID------------------FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~------------------~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
+++.++...+ +...+ +.-..+.||||+.+
T Consensus 68 ~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~-------------------------------- 114 (353)
T PF00930_consen 68 RDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY-------------------------------- 114 (353)
T ss_dssp ESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--------------------------------
T ss_pred EECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCE--------------------------------
Confidence 9998875442 22111 11234667777742
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc--cceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV--SGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
++..-.++..|..+.+... ...+ --.+..+.+-.-|.-.... .+.|+|+
T Consensus 115 -----------------la~~~~d~~~v~~~~~~~~--------~~~~~~yp~~~~~~YPk~G~~np~v----~l~v~~~ 165 (353)
T PF00930_consen 115 -----------------LAFLRFDEREVPEYPLPDY--------SPPDSQYPEVESIRYPKAGDPNPRV----SLFVVDL 165 (353)
T ss_dssp -----------------EEEEEEE-TTS-EEEEEEE--------SSSTESS-EEEEEE--BTTS---EE----EEEEEES
T ss_pred -----------------EEEEEECCcCCceEEeecc--------CCccccCCcccccccCCCCCcCCce----EEEEEEC
Confidence 2333445566666655311 1111 1245555554444333222 6778899
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEEc--CCC---cEEEEeCCCCeEEEEeec-CccCe---eEEEE
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSAD--STG---SVQFWDSRHGTLLQAHSF-HKGDV---NALAA 302 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~--~dg---~i~iwd~~~~~~~~~~~~-h~~~v---~~l~~ 302 (817)
.+++.. .+.... ........+..+.|.+++. ++..- .+. .+.+.|..++.....+.. ..+.| ....+
T Consensus 166 ~~~~~~-~~~~~~--~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 166 ASGKTT-ELDPPN--SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp SSTCCC-EE---H--HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred CCCcEE-Eeeecc--ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 888764 222110 0013577889999999995 54433 222 266778877654333322 22222 35555
Q ss_pred e-cCCCE-EEEEccCCcEEEEEeecc
Q 003467 303 A-PSHNR-VFSTGSDGQVILYKASCE 326 (817)
Q Consensus 303 s-~~~~~-l~~~~~dg~i~iw~~~~~ 326 (817)
. +++.. |.....||--++|-+...
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 4 55544 444556777666665543
No 340
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.15 E-value=0.0061 Score=66.26 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeec-cCCccceE-------EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRS-LPRVSGRV-------LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v-------~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
+..+.+++.++.|+-.|..+++.+-.... .......+ ..+++. +..++.++.|+.|.-.|..+|+.+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 34788888889999999988876532211 11000011 112232 356778888999999999999999877
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEcC------CCcEEEEeCCCCeEEEEee
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 291 (817)
..... .....+.+--..-++.++.+.. +|.|.-+|.++|+.+.++.
T Consensus 147 ~~~~~----~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDY----KAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccc----cccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 63100 0011122211122566555543 6889999999999887754
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.13 E-value=6.8e-05 Score=78.00 Aligned_cols=184 Identities=21% Similarity=0.225 Sum_probs=113.6
Q ss_pred CCeEEEEecCCCcEEEEE---cCC--ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec-CC--c
Q 003467 492 RKIICSTISNSGMLFAYS---DHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--R 563 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~---~~~--~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-dg--~ 563 (817)
..+..-+|+|+++.+++. ..+ .+.++++.... ...+ .... ..-...+|||||++|+.... || .
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i-----~~~~---g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI-----LNFN---GNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee-----eccC---CccCCccCCCCCCEEEEEECCCCCcc
Confidence 456677899999887773 223 46666666521 2222 1122 23445679999999988754 44 5
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC---cEEEEECCCcceEEEEecCCCCCeE
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVT 640 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~i~ 640 (817)
|+++|+.+.+. ..+.. ..+.-+.-.|||||++|+.++..+ .|.++++++............ -.
T Consensus 264 iy~~dl~~~~~-~~Lt~-----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~--~~ 329 (425)
T COG0823 264 IYLMDLDGKNL-PRLTN-----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG--NS 329 (425)
T ss_pred EEEEcCCCCcc-eeccc-----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--Cc
Confidence 78888876663 33443 233344678999999998876543 588888888876444433322 22
Q ss_pred EEEecCCCCCeEEEEecC-Ce--EEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCce
Q 003467 641 AAGFPPQNNNVLIITTSS-NQ--VYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 714 (817)
Q Consensus 641 ~l~~sp~d~~~l~~~~~d-~~--i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~ 714 (817)
.-.|+| |+++|+..+.. |. |.+.|+.++.- .+............|.|+|. .+++.+..
T Consensus 330 ~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~------------~~~lt~~~~~e~ps~~~ng~---~i~~~s~~ 390 (425)
T COG0823 330 NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK------------IRILTSTYLNESPSWAPNGR---MIMFSSGQ 390 (425)
T ss_pred CccCCC-CCCEEEEEeccCCceeeEEeccCCCCc------------EEEccccccCCCCCcCCCCc---eEEEeccC
Confidence 678999 99999888754 43 66666665541 11223334445567777643 44444333
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.024 Score=61.70 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCee----------EEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 264 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVN----------ALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 264 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~----------~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+++++.++.++.|.-.|.++|+.+.++.... ..+. .+++. +..++.++.|+.+.-+|..+++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCC
Confidence 6788888888999999999999988775321 1111 12222 3568888889999999998887
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.06 E-value=0.00097 Score=69.77 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=115.9
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEE
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWD 94 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd 94 (817)
....|.++|+|+++++++ +|.-.|+.....+ -...-.+ ...+|++.++ .|+-..+++|.++.
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r----~k~~G~g------~~~vw~~~n~-------yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR----NKAFGSG------LSFVWSSRNR-------YAVLESSSTIKIYK 95 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTTE----EEEEEE-------SEEEE-TSSE-------EEEE-TTS-EEEEE
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCCc----ccccCce------eEEEEecCcc-------EEEEECCCeEEEEE
Confidence 467899999999999965 6888888843322 2332222 3678888654 67777788899963
Q ss_pred CCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 95 LYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
--+.+....+... ..+..+-. | .+|.
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~---G--------------------------------------------------~LL~ 121 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG---G--------------------------------------------------NLLG 121 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE----S--------------------------------------------------SSEE
T ss_pred cCccccceEEcCC-cccceEEc---C--------------------------------------------------cEEE
Confidence 2222322233211 12333322 4 3555
Q ss_pred EEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC-----------ceEEEEEe
Q 003467 175 LACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-----------YEIYRITV 243 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-----------~~~~~~~~ 243 (817)
..+. +.|.+||+.++..+ +.+.-. .|..+.|+++|++++..+.+ .+.+++.... .....+.
T Consensus 122 ~~~~-~~i~~yDw~~~~~i---~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~- 193 (443)
T PF04053_consen 122 VKSS-DFICFYDWETGKLI---RRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH- 193 (443)
T ss_dssp EEET-TEEEEE-TTT--EE---EEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE-
T ss_pred EECC-CCEEEEEhhHccee---eEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE-
Confidence 5554 48999999877665 444422 48999999999999999877 7777765322 0222222
Q ss_pred ecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 244 GLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.....|.+..|..| .++-.... .|+.+=. |. ...+..-..++.-+.+.++.+.++....|+.|..+.+
T Consensus 194 -------E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~--Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 194 -------EISERIKSGCWVED-CFIYTTSN-HLKYLVN--GE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp -------EE-S--SEEEEETT-EEEEE-TT-EEEEEET--TE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred -------EecceeEEEEEEcC-EEEEEcCC-eEEEEEc--CC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 11455666777666 44433333 6666332 22 2223323457777888888889999999999999987
Q ss_pred ecc
Q 003467 324 SCE 326 (817)
Q Consensus 324 ~~~ 326 (817)
+..
T Consensus 262 d~~ 264 (443)
T PF04053_consen 262 DLS 264 (443)
T ss_dssp -HH
T ss_pred CHH
Confidence 654
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.00 E-value=0.0015 Score=62.33 Aligned_cols=210 Identities=10% Similarity=0.123 Sum_probs=112.2
Q ss_pred CCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC
Q 003467 492 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~ 571 (817)
..+..+++.|+...|++-.+..-.|+.++. .+. + +++..+.+ ..-.-.+++..++.++++--.++.+.++++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~-v--lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGK-V--LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET--T---E--EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC--CCC-E--EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 559999999987766555554556777775 233 3 34444554 33577888887776666555589999999843
Q ss_pred Cc-e-----eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCC--c--ceEEEE------ecCC
Q 003467 572 SE-L-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI--Q--RQHWFI------SRLE 635 (817)
Q Consensus 572 ~~-~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~--~--~~~~~~------~~~~ 635 (817)
.. . ...+... ....++..+-.++|+|.++.|.++-...-..||.+.. . ...... ....
T Consensus 96 ~~~~~~~~~~~~~~l~------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 96 DTTSLDRADVQKISLG------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp --TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred cccccchhhceEEecc------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 21 1 1112110 0012556789999999988888888776677777654 1 111110 1112
Q ss_pred CCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceE
Q 003467 636 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM 715 (817)
Q Consensus 636 ~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~ 715 (817)
...+.+++++|.++++++....+..|.++|.+..-+..++-... ...+...-...-+|+|+++| ...|+.-.+-+
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g---~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlf 244 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRG---FHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLF 244 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STT---GGG-SS---SEEEEEE-TT----EEEEETTTEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCc---ccCcccccCCccEEEECCCC--CEEEEcCCceE
Confidence 25688999999777788888888899999965543321111100 00011111347899999974 45555555555
Q ss_pred EEE
Q 003467 716 CVI 718 (817)
Q Consensus 716 ~~~ 718 (817)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.98 E-value=0.012 Score=61.13 Aligned_cols=151 Identities=14% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCeEEEEecCCCcEEEE--E-c-CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEe-cCCCEEEEE-ecCC-
Q 003467 490 ASRKIICSTISNSGMLFAY--S-D-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-YDSSQLIIA-GHDR- 562 (817)
Q Consensus 490 ~~~~i~~~~~s~~g~~la~--~-~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs-pd~~~l~~~-~~dg- 562 (817)
....+..+.|+++++.|++ . . .+.+.++.++... +...+.. .....+-........|. +++..++.. ..+|
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 3456889999999994433 2 2 2444454444422 2222212 22233333344566665 666655544 4566
Q ss_pred -cEEEEEccCCceeeeeccCcccccccCCCCCCceeE-EEEccCCCEEEE-EeCC----CcEEEEECC-CcceEEEEecC
Q 003467 563 -RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLAA-VNCF----GDVYIFNLE-IQRQHWFISRL 634 (817)
Q Consensus 563 -~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~dg~~la~-~~~d----g~i~vwd~~-~~~~~~~~~~~ 634 (817)
.|++++...+. ...+.. ..-.|+. +.++++++.|.. +..+ ..|+.-+++ ++... .+...
T Consensus 260 ~hly~~~~~~~~-~~~lT~-----------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~LT~~ 326 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTS-----------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CLTCE 326 (353)
T ss_dssp EEEEEEETTSSE-EEESS------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ESSTT
T ss_pred cEEEEEcccccc-eecccc-----------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-eccCC
Confidence 46666655554 334443 3555644 778888886654 4332 246666677 44443 33222
Q ss_pred CCCCeEEEEecCCCCCeEEEEec
Q 003467 635 EGASVTAAGFPPQNNNVLIITTS 657 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~~~l~~~~~ 657 (817)
.+ .-..+.||| ++++++..++
T Consensus 327 ~~-~~~~~~~Sp-dg~y~v~~~s 347 (353)
T PF00930_consen 327 DG-DHYSASFSP-DGKYYVDTYS 347 (353)
T ss_dssp SS-TTEEEEE-T-TSSEEEEEEE
T ss_pred CC-CceEEEECC-CCCEEEEEEc
Confidence 21 225899999 9988877654
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=0.013 Score=62.63 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=75.8
Q ss_pred EccCCCEEEEeeCCCcEEEEECCC----C-ceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC
Q 003467 211 WSADGNMLYSGSSDGYIRSWDAKL----G-YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 211 ~s~dg~~l~s~~~dg~i~vwd~~~----g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~ 283 (817)
+.++|++...+ ++.|.+.|..+ + ..+..+. .....+.+.++||| .++++..+.++.|.|+.+
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP---------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP---------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE---------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 34578877763 56899999988 3 4555554 45567889999999 366677799999999987
Q ss_pred CeE------------EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 284 GTL------------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 284 ~~~------------~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.+. +..... ...-...+|.++|+...+--.|..|..|++..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 542 333333 33445678999998777777899999999987
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00053 Score=71.49 Aligned_cols=182 Identities=23% Similarity=0.157 Sum_probs=110.1
Q ss_pred ccCCCceEEEEECCCCCeEEEE---ecC-CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 10 DWKPSPVVALATSADDSQVAAA---RED-GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~---~~d-g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.-....+..-+|+|+++.++.- ... ..+.++++.+++.. ....+.++ -...+|+|||+. .+++..
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--~i~~~~g~----~~~P~fspDG~~-----l~f~~~ 257 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--VILNFNGN----NGAPAFSPDGSK-----LAFSSS 257 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc--eeeccCCc----cCCccCCCCCCE-----EEEEEC
Confidence 3344566777899999987754 222 46999999988742 33344443 446789999986 344555
Q ss_pred CCCe--EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 86 IDGS--VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 86 ~d~~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
.||. |.+.|+.++. +..+....+.-..-.|+|||+.+
T Consensus 258 rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~i---------------------------------------- 296 (425)
T COG0823 258 RDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKI---------------------------------------- 296 (425)
T ss_pred CCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEE----------------------------------------
Confidence 5664 6677777766 33355444444477899999653
Q ss_pred ccccccCCEEEEEeCCCc--EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-Cc--EEEEECCCCceE
Q 003467 164 EQSVVEDRRVALACDDGC--VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-GY--IRSWDAKLGYEI 238 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g~--i~vwd~~~g~~~ 238 (817)
+.+....|. |.+++.+.+.. ..+....+.-..-.|+|||++|+..+.. |. |.+.|+.++...
T Consensus 297 ---------vf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~ 363 (425)
T COG0823 297 ---------VFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI 363 (425)
T ss_pred ---------EEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcE
Confidence 333444444 44455543322 2222222222277899999999987753 44 777777776654
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG 265 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~ 265 (817)
+.+. .......-.+.+++
T Consensus 364 ~~lt---------~~~~~e~ps~~~ng 381 (425)
T COG0823 364 RILT---------STYLNESPSWAPNG 381 (425)
T ss_pred EEcc---------ccccCCCCCcCCCC
Confidence 4443 33333445566676
No 348
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.88 E-value=0.00059 Score=73.36 Aligned_cols=190 Identities=15% Similarity=0.139 Sum_probs=131.9
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+..+..|+-...+..+|+.+..+. +...-..+.|.=|.. +++++.+|...|+|.+-|..+-+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------ 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence 3457777877778888898755543 222222333555554 57899999999999999999999999998
Q ss_pred CCCCceeEEEeEEecCCeEEEEcC---------CCcEEEEeCCCCeEEEEeecCccCeeEEEEecC-CCEEEEEccCCcE
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADS---------TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQV 318 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~~~~~dg~i 318 (817)
.|.+.|.++....+ .|++++. |.-|+|||++.-+.+..+..+.++ .-+.|.|. ...+++++..|..
T Consensus 215 --aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 215 --AHSGSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred --ccccceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 69999988776533 5555543 445899999988777666655544 55677775 3568888899999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCC
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 398 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (817)
.+-|..+-..... -+......+..+.++.++ +.+.
T Consensus 291 q~vd~~~lsNP~~-------------~~~~v~p~~s~i~~fDiS---------sn~~----------------------- 325 (1118)
T KOG1275|consen 291 QFVDTATLSNPPA-------------GVKMVNPNGSGISAFDIS---------SNGD----------------------- 325 (1118)
T ss_pred eeccccccCCCcc-------------ceeEEccCCCcceeEEec---------CCCc-----------------------
Confidence 9888443221100 122333444557777776 5554
Q ss_pred cEEEEecCCCeEEEEeCCccc
Q 003467 399 PMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~ 419 (817)
.++.|..+|.|.+|.-....
T Consensus 326 -alafgd~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 326 -ALAFGDHEGHVNLWADRPQP 345 (1118)
T ss_pred -eEEEecccCcEeeecCCCCC
Confidence 99999999999999855433
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.0062 Score=63.88 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
......|.++|+|++ ++. +.||.-.++.....+.... +.-...+|.+.+
T Consensus 32 ~~~p~~ls~npngr~------v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n------------------- 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRF------VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN------------------- 80 (443)
T ss_dssp SS--SEEEE-TTSSE------EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-------------------
T ss_pred CcCCeeEEECCCCCE------EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-------------------
Confidence 456789999999986 555 6678888888555443332 233456777755
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEE-EecCCCceeEeeccCCccceEEEEEEccCCCEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIY-RITDSDELIYHRSLPRVSGRVLSVTWSADGNML 218 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 218 (817)
.+|+-...+.|.|+ ++.+ ... +.+.- ...+..+-. |..|
T Consensus 81 --------------------------------~yAv~~~~~~I~I~kn~~~-~~~---k~i~~-~~~~~~If~---G~LL 120 (443)
T PF04053_consen 81 --------------------------------RYAVLESSSTIKIYKNFKN-EVV---KSIKL-PFSVEKIFG---GNLL 120 (443)
T ss_dssp --------------------------------EEEEE-TTS-EEEEETTEE--TT---------SS-EEEEE----SSSE
T ss_pred --------------------------------cEEEEECCCeEEEEEcCcc-ccc---eEEcC-CcccceEEc---CcEE
Confidence 78888878899996 3322 111 11111 112333322 7877
Q ss_pred EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCC-----------eEE
Q 003467 219 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG-----------TLL 287 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~ 287 (817)
+..+.+ .|.+||+++++.+.++. .. .|..+.|+++|.+++-..+..+.+++.+.. ...
T Consensus 121 ~~~~~~-~i~~yDw~~~~~i~~i~---------v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 121 GVKSSD-FICFYDWETGKLIRRID---------VS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp EEEETT-EEEEE-TTT--EEEEES---------S--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred EEECCC-CEEEEEhhHcceeeEEe---------cC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhce
Confidence 777655 89999999999999986 22 388999999996555555667888876533 023
Q ss_pred EEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 288 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
..+..-...|.+.+|..| -++++. .. .++- +..+.
T Consensus 190 ~~~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge 224 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGE 224 (443)
T ss_dssp EEEEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTE
T ss_pred EEEEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCC
Confidence 333333578889999866 334443 33 5555 44443
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0053 Score=63.43 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=88.8
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCC------ccceEEEEEEcc-----CC---CEEEEeeCCCcE
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR------VSGRVLSVTWSA-----DG---NMLYSGSSDGYI 227 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~s~-----dg---~~l~s~~~dg~i 227 (817)
+.....++=.++|+|.++|.+.|.|++ +..+.+...+.. ....|+++.|+- |+ -.|++|...|.+
T Consensus 89 vtal~~S~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v 167 (395)
T PF08596_consen 89 VTALKNSDIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV 167 (395)
T ss_dssp EEEEEE-BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred EeEEecCCCcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence 333334444599999999999999997 444444444443 344688888862 33 478899999999
Q ss_pred EEEECCC---CceEEEEEeecCCCCCCCceeEEEeEEe-c-----------------CC----eEEEEcCCCcEEEEeCC
Q 003467 228 RSWDAKL---GYEIYRITVGLGGLGSGPELCIWSLLSL-R-----------------CG----TLVSADSTGSVQFWDSR 282 (817)
Q Consensus 228 ~vwd~~~---g~~~~~~~~~~~~~~~~~~~~v~~v~~~-~-----------------~~----~l~s~~~dg~i~iwd~~ 282 (817)
.+|.+.- +.....+.... ..+...|..+... . .+ -++....+..++++...
T Consensus 168 ~~fkIlp~~~g~f~v~~~~~~----~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 168 LTFKILPSSNGRFSVQFAGAT----TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp EEEEEEE-GGG-EEEEEEEEE------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred EEEEEecCCCCceEEEEeecc----ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 9998741 32222222111 1344555555432 1 11 24445556779999998
Q ss_pred CCeEEEEeecCccCeeEEEEe-----cCCCEEEEEccCCcEEEEEeeccc
Q 003467 283 HGTLLQAHSFHKGDVNALAAA-----PSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 283 ~~~~~~~~~~h~~~v~~l~~s-----~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+.+.........-....+++- ..+..|++-..+|.|++|.+..-+
T Consensus 244 ~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 244 KSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp ---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 877765544222223334442 356677788889999999998766
No 351
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.86 E-value=0.092 Score=59.30 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=72.7
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-----ceEEEEEEcc----------------CCCEEEEeeCCCcEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-----GRVLSVTWSA----------------DGNMLYSGSSDGYIR 228 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~v~~s~----------------dg~~l~s~~~dg~i~ 228 (817)
+..|..++.++.|.-.|..+++++-....-.... .....+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 3578888888888888988877653211110000 0122333321 345888999999999
Q ss_pred EEECCCCceEEEEEeecC-----CCCCCC--ceeEEEeEEecCCeEEEEcC----------CCcEEEEeCCCCeEEEEee
Q 003467 229 SWDAKLGYEIYRITVGLG-----GLGSGP--ELCIWSLLSLRCGTLVSADS----------TGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 229 vwd~~~g~~~~~~~~~~~-----~~~~~~--~~~v~~v~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~ 291 (817)
-.|.++|+....+...-. +..... ...+.+--..-++.++.|+. +|.|+-+|.++|+++..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999999977642100 000000 00111111122566666643 6889999999999998875
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.74 E-value=0.023 Score=60.75 Aligned_cols=243 Identities=14% Similarity=0.185 Sum_probs=130.5
Q ss_pred ceEEEEECCCCCeEEEE-ecCC----cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---
Q 003467 15 PVVALATSADDSQVAAA-REDG----SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI--- 86 (817)
Q Consensus 15 ~I~~la~spdg~~la~~-~~dg----~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~--- 86 (817)
.+..+++||||++||.+ +..| .|+|.|+.+++. ....+... .-..++|++|++. |+....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---l~d~i~~~---~~~~~~W~~d~~~------~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---LPDGIENP---KFSSVSWSDDGKG------FFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---EEEEEEEE---ESEEEEECTTSSE------EEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---cCCccccc---ccceEEEeCCCCE------EEEEEeCcc
Confidence 44578999999999977 3334 499999999863 23333322 2234999999876 655443
Q ss_pred --------CCeEEEEECCCCeEE--EEEeecCce--EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 87 --------DGSVSEWDLYDLKQK--IVLQSIDFS--IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 87 --------d~~i~vwd~~~~~~~--~~~~~~~~~--i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
...|..|.+.+.... ..+...... ...+..++|+.++
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l------------------------------- 241 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYL------------------------------- 241 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEE-------------------------------
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEE-------------------------------
Confidence 234888888776432 444443333 4567788888542
Q ss_pred CCCCCccccccccccCCEEEEEeC-C-CcEEEEEecCC----CceeEeeccCCcc-ceEEEEEEccCCCEEEEee---CC
Q 003467 155 NDSDSDELHEQSVVEDRRVALACD-D-GCVRIYRITDS----DELIYHRSLPRVS-GRVLSVTWSADGNMLYSGS---SD 224 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~----~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~---~d 224 (817)
.+.+.+. + ..+++.++..+ ..+ +.+.... +....+... .+.+++... .+
T Consensus 242 -----------------~i~~~~~~~~s~v~~~d~~~~~~~~~~~---~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~ 300 (414)
T PF02897_consen 242 -----------------FISSSSGTSESEVYLLDLDDGGSPDAKP---KLLSPREDGVEYYVDHH-GDRLYILTNDDAPN 300 (414)
T ss_dssp -----------------EEEEESSSSEEEEEEEECCCTTTSS-SE---EEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT
T ss_pred -----------------EEEEEccccCCeEEEEeccccCCCcCCc---EEEeCCCCceEEEEEcc-CCEEEEeeCCCCCC
Confidence 2222222 2 45777777643 122 2222222 233333333 444444332 24
Q ss_pred CcEEEEECCCCce---EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCc--EEEEeCCCCeEEEEeec-CccCee
Q 003467 225 GYIRSWDAKLGYE---IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS--VQFWDSRHGTLLQAHSF-HKGDVN 298 (817)
Q Consensus 225 g~i~vwd~~~g~~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~-h~~~v~ 298 (817)
+.|...++.+... ...+... .....+..+....+..++....++. |+++++..+.....+.. -.+.|.
T Consensus 301 ~~l~~~~l~~~~~~~~~~~l~~~------~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~ 374 (414)
T PF02897_consen 301 GRLVAVDLADPSPAEWWTVLIPE------DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVS 374 (414)
T ss_dssp -EEEEEETTSTSGGGEEEEEE--------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEE
T ss_pred cEEEEecccccccccceeEEcCC------CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEe
Confidence 6777778776652 2223210 2334667777665556666655554 88899984444444333 334456
Q ss_pred EEEEecCCCEEEEE--cc--CCcEEEEEeeccc
Q 003467 299 ALAAAPSHNRVFST--GS--DGQVILYKASCES 327 (817)
Q Consensus 299 ~l~~s~~~~~l~~~--~~--dg~i~iw~~~~~~ 327 (817)
.+...++++.+... +. -+++..||+.+++
T Consensus 375 ~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 375 GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 66666666655432 22 4567777777765
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.032 Score=58.67 Aligned_cols=178 Identities=11% Similarity=0.067 Sum_probs=93.9
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|.+|+. .|+.+.++.-..+.|-++.|+.+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e------------------------------------------------ 92 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE------------------------------------------------ 92 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC------------------------------------------------
Confidence 4888874 455666665555788888887765
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEe-----eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc-eEEEEE
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYH-----RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY-EIYRIT 242 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~-~~~~~~ 242 (817)
.|++-..||.+++||+. ++. .+. ....-....+....+..+|-.++++ ++.+.+-+-.... ....+.
T Consensus 93 ---~LvvV~~dG~v~vy~~~-G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~ 165 (410)
T PF04841_consen 93 ---ELVVVQSDGTVRVYDLF-GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLP 165 (410)
T ss_pred ---eEEEEEcCCEEEEEeCC-Cce-eechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccc
Confidence 78888899999999996 333 111 1111122334444555566444443 4444443322221 111111
Q ss_pred eecCCCCCCCce-eEEE-eEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEE
Q 003467 243 VGLGGLGSGPEL-CIWS-LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 243 ~~~~~~~~~~~~-~v~~-v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~ 319 (817)
.........+.. ..+. ..++.+. ..+....++.+.+.+-..... +. ..+++..+++||++++|+.-..+|.+.
T Consensus 166 ~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~ 241 (410)
T PF04841_consen 166 EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLW 241 (410)
T ss_pred cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEE
Confidence 100000000111 1111 1233333 333444445555444332211 22 246899999999999999998999998
Q ss_pred EEEeecc
Q 003467 320 LYKASCE 326 (817)
Q Consensus 320 iw~~~~~ 326 (817)
+.+..-.
T Consensus 242 v~ssDf~ 248 (410)
T PF04841_consen 242 VVSSDFS 248 (410)
T ss_pred EEECccc
Confidence 8875443
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.013 Score=61.63 Aligned_cols=67 Identities=24% Similarity=0.399 Sum_probs=49.9
Q ss_pred EEEECCCCCeEEEEecC----------C-cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 18 ALATSADDSQVAAARED----------G-SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 18 ~la~spdg~~la~~~~d----------g-~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
.+|.+|.|.-+|+...+ . .|+||+..... ...+.-. .+.|.++.|+.+.. |+....
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l-----l~~i~w~-~~~iv~~~wt~~e~-------LvvV~~ 99 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL-----LSSIPWD-SGRIVGMGWTDDEE-------LVVVQS 99 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE-----eEEEEEC-CCCEEEEEECCCCe-------EEEEEc
Confidence 46888989888888655 1 49999976643 3333322 27899999998654 788889
Q ss_pred CCeEEEEECCC
Q 003467 87 DGSVSEWDLYD 97 (817)
Q Consensus 87 d~~i~vwd~~~ 97 (817)
||+++++|+..
T Consensus 100 dG~v~vy~~~G 110 (410)
T PF04841_consen 100 DGTVRVYDLFG 110 (410)
T ss_pred CCEEEEEeCCC
Confidence 99999999863
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.015 Score=57.69 Aligned_cols=111 Identities=20% Similarity=0.137 Sum_probs=71.8
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCC-CcEEEEECCC--CceEE---EEEeecCCCCCCCceeEEEeEEecCCeEE-E
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSD-GYIRSWDAKL--GYEIY---RITVGLGGLGSGPELCIWSLLSLRCGTLV-S 269 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g~i~vwd~~~--g~~~~---~~~~~~~~~~~~~~~~v~~v~~~~~~~l~-s 269 (817)
+.+..+-..-+.|+||||++.|+.+... +.|..|++.. +..-. ..... ......-.++...+|.+- +
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~------~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD------EEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc------CCCCCCCceEEeCCCCEEEe
Confidence 4444555566789999999988877664 7788887752 21111 11100 123344455666677555 4
Q ss_pred EcCCC-cEEEEeCCCCeEEEEeecCccCeeEEEEe-cCCCEEEEEcc
Q 003467 270 ADSTG-SVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFSTGS 314 (817)
Q Consensus 270 ~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~~~~~ 314 (817)
+...| .|.+|+.+ |+++..+......+++++|- ++.+.|++.+.
T Consensus 230 a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 44443 89999999 99999998887888888885 34566665544
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.71 E-value=0.0036 Score=50.05 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=73.9
Q ss_pred eeEEEEec-CC---CEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEE
Q 003467 543 AHSMIFSY-DS---SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 618 (817)
Q Consensus 543 i~~~~fsp-d~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~ 618 (817)
|++|++.. |+ +.|++|+.|..|++|+- .+.+..+.. ...|++|+-... ..++.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e------------~~~v~~L~~~~~-~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE------------TDKVTSLCSLGG-GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec------------ccceEEEEEcCC-CEEEEEecCCEEE
Confidence 55666654 32 58999999999999984 377777774 678888887666 5789999999999
Q ss_pred EEECCCcceEEEEecCCCCCeEEEEecCCCC---CeEEEEecCCeEE
Q 003467 619 IFNLEIQRQHWFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVY 662 (817)
Q Consensus 619 vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~---~~l~~~~~d~~i~ 662 (817)
+|+- ....|.+...+ .++++++..-++ .-|++|-++|.|-
T Consensus 67 vY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9975 34456666544 577777765121 3688888888764
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00016 Score=74.44 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=80.3
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee-EEEEccCCCEEEEEeCCCcEEEE
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFGDVYIF 620 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~s~dg~~la~~~~dg~i~vw 620 (817)
.+..+.|+|.-..+|++..+|.|.+..+. .+.+.++.. +...++ +++|.|||+.||+|-.||+|++.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----------PGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----------CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 68889999999999999999999999988 888888885 456666 99999999999999999999999
Q ss_pred ECCCcceEEEEecCCCCCeEEEEecC
Q 003467 621 NLEIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 621 d~~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
|++++......+..-...|+.+-|+|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99999876554333346889999976
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.67 E-value=0.0037 Score=49.98 Aligned_cols=100 Identities=27% Similarity=0.223 Sum_probs=73.7
Q ss_pred EEEEEEcc---CC-CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 206 VLSVTWSA---DG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 206 v~~v~~s~---dg-~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
|++|++.. || +.|++|+.|..||+|+ ..+.+..++ ....|.++..+..++++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~---------e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT---------ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe---------cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 55666543 33 5799999999999998 456777776 667888999888899999999999999986
Q ss_pred CCCeEEEEeecCccCeeEEEEec-CC---CEEEEEccCCcEE
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAP-SH---NRVFSTGSDGQVI 319 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~-~~---~~l~~~~~dg~i~ 319 (817)
. ..+...+.... +.++++.. ++ ..|++|-.+|.|-
T Consensus 71 ~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 S--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4 45666665333 56655543 32 3688887788764
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.022 Score=59.43 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=144.3
Q ss_pred EEEEECCCCCeEEE-EecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---CCeEEE
Q 003467 17 VALATSADDSQVAA-AREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---DGSVSE 92 (817)
Q Consensus 17 ~~la~spdg~~la~-~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d~~i~v 92 (817)
..+++++++..+.+ ...++.|.+.|..+.+ +.....-. ..-..++++|+++. +..+.. +++|.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~----~~~~~~vG--~~P~~~~~~~~~~~------vYV~n~~~~~~~vsv 144 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT----VLGSIPVG--LGPVGLAVDPDGKY------VYVANAGNGNNTVSV 144 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccc----eeeEeeec--cCCceEEECCCCCE------EEEEecccCCceEEE
Confidence 46788999885544 4556889999977655 23333322 25678999999987 555443 789999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
.|-.+++.+.....-..+ ..++++|++.. .
T Consensus 145 id~~t~~~~~~~~vG~~P-~~~a~~p~g~~-------------------------------------------------v 174 (381)
T COG3391 145 IDAATNKVTATIPVGNTP-TGVAVDPDGNK-------------------------------------------------V 174 (381)
T ss_pred EeCCCCeEEEEEecCCCc-ceEEECCCCCe-------------------------------------------------E
Confidence 999999988885543345 88999999942 3
Q ss_pred EEEEeCCCcEEEEEecCCCcee-EeeccCCccceEEEEEEccCCCEEEEeeCC---CcEEEEECCCCceEEE-EEeecCC
Q 003467 173 VALACDDGCVRIYRITDSDELI-YHRSLPRVSGRVLSVTWSADGNMLYSGSSD---GYIRSWDAKLGYEIYR-ITVGLGG 247 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~g~~~~~-~~~~~~~ 247 (817)
.++-..++.|.+.|..+..... .......-...-..++++|+|.++...... +.+.+.|..++..... ...
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~---- 250 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV---- 250 (381)
T ss_pred EEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----
Confidence 4444578999999976433221 000011222344578899999977766554 5899999988876665 221
Q ss_pred CCCCCceeEEEeEEecCCe-EEEE-cCCCcEEEEeCCCCeEEEEeecCcc---CeeEEEEecC
Q 003467 248 LGSGPELCIWSLLSLRCGT-LVSA-DSTGSVQFWDSRHGTLLQAHSFHKG---DVNALAAAPS 305 (817)
Q Consensus 248 ~~~~~~~~v~~v~~~~~~~-l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~s~~ 305 (817)
+.. ....+.+.|+|. +... ...+.+.+-|..+............ .+..+++.+.
T Consensus 251 ---~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 251 ---GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ---ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 222 556788899993 3333 4457899999998887776654332 2444555443
No 360
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.60 E-value=0.039 Score=55.44 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCC-cEEEEEcC---Cc--eEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec----
Q 003467 491 SRKIICSTISNSG-MLFAYSDH---VK--PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---- 560 (817)
Q Consensus 491 ~~~i~~~~~s~~g-~~la~~~~---~~--i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~---- 560 (817)
...+..+.+||.. .+|+++-. .. -++|-+.. .+...+.+.+.. ....+.-=-|+|||..|..-+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~~---~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRRM---EGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceeeecCC---CCcccccccccCCCCEEEEEeecCCC
Confidence 3567778888855 55666533 23 38999986 333333333221 1234555568999998876433
Q ss_pred -CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC----------------cEEEEECC
Q 003467 561 -DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----------------DVYIFNLE 623 (817)
Q Consensus 561 -dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg----------------~i~vwd~~ 623 (817)
+..|.-+|+.+++...... ..+-..+-.|+||+++|-=+.|. .|++++++
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~-------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME-------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE-------------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred CceEEEeeCCCCCCceEEEe-------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 3357777888776543222 22455777789998876544432 56778888
Q ss_pred CcceEEEEec--------CCC-CCeEEEEecCCCCCeEEEE-ecCCeEEEEEcC
Q 003467 624 IQRQHWFISR--------LEG-ASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVE 667 (817)
Q Consensus 624 ~~~~~~~~~~--------~~~-~~i~~l~~sp~d~~~l~~~-~~d~~i~vwd~~ 667 (817)
.+........ .+. ..=-...|+| |+++++-. ...|...||-++
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 7765422111 000 0123579999 77765554 556766666543
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.0056 Score=66.92 Aligned_cols=197 Identities=18% Similarity=0.188 Sum_probs=107.4
Q ss_pred CCeEEEEecCCCcEEEEEc-------CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecC-Cc
Q 003467 492 RKIICSTISNSGMLFAYSD-------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-RR 563 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~-------~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~d-g~ 563 (817)
..+.+.++||||+.+++.. +..-.||-..... .... + ..+ ...+.-.|+|||+.|++.... ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~--l----t~g--~~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQ--V----LEG--HSLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-ccee--e----ecC--CCCCCceECCCCCceEEEecCcce
Confidence 3577889999999988743 4445666554311 1111 1 111 136778899999988877533 22
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEE---EECCCcceEE----EEecCCC
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI---FNLEIQRQHW----FISRLEG 636 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v---wd~~~~~~~~----~~~~~~~ 636 (817)
+++.+-.....+..+......... ...+.|..+.|||||..||... +|.|+| -....+.... .+...-.
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 223222111111111110000000 1356799999999999999876 577877 4545554221 1211122
Q ss_pred CCeEEEEecCCCCCeEEEEecCCeEEEE--EcCCCccccchhcccCccCcchhc--CCCceeEEEECCCCCCCEEEEEcC
Q 003467 637 ASVTAAGFPPQNNNVLIITTSSNQVYVF--DVEAKQLGEWSMQHTFVLPRRYQE--FPGEVIGLSFSPSPSSSSVIIYSA 712 (817)
Q Consensus 637 ~~i~~l~~sp~d~~~l~~~~~d~~i~vw--d~~~~~~~~ws~~~~~~~~~~~~~--~~~~v~~l~f~p~~~~~~~~~~~~ 712 (817)
..+.++.|.. ++. |+++..++...+| +++.... ..+.. ...++.+|+=+++ .+++.++
T Consensus 497 ~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~------------~~~~~~n~~~~v~~vaa~~~----~iyv~~~ 558 (591)
T PRK13616 497 DTAVSLDWRT-GDS-LVVGRSDPEHPVWYVNLDGSNS------------DALPSRNLSAPVVAVAASPS----TVYVTDA 558 (591)
T ss_pred CccccceEec-CCE-EEEEecCCCCceEEEecCCccc------------cccCCCCccCceEEEecCCc----eEEEEcC
Confidence 3468899998 776 5566655544444 4553332 11122 2466777776652 4666666
Q ss_pred ceEEEEE
Q 003467 713 RAMCVID 719 (817)
Q Consensus 713 ~~~~~~d 719 (817)
+.+..+.
T Consensus 559 ~g~~~l~ 565 (591)
T PRK13616 559 RAVLQLP 565 (591)
T ss_pred CceEEec
Confidence 6655543
No 362
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.58 E-value=0.027 Score=58.07 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=60.4
Q ss_pred CccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccc------ccCCCCCCceeEEEEccC-CC-EE
Q 003467 537 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD------REIQPSEPPITKMFTSSD-GQ-WL 608 (817)
Q Consensus 537 ~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~~s~d-g~-~l 608 (817)
......+.+++.+|++++.|+...-|.|.++|+.++..++.+++.++.+= +....+...-....-.+. .. ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 33344688999999999999988889999999999999999988654210 000000000000000000 11 23
Q ss_pred EEEeCCCcEEEEECCCcceEEEEec
Q 003467 609 AAVNCFGDVYIFNLEIQRQHWFISR 633 (817)
Q Consensus 609 a~~~~dg~i~vwd~~~~~~~~~~~~ 633 (817)
+-+-..|.|.||.+..+.....+..
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEe
Confidence 4456788999999988876655543
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.035 Score=56.79 Aligned_cols=222 Identities=12% Similarity=0.113 Sum_probs=127.1
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCC-CCCCceEEEeeC----------CCeEEEEECCCC----e
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKM-GLPGGRLFSSSI----------DGSVSEWDLYDL----K 99 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~-~~~~~~l~s~~~----------d~~i~vwd~~~~----~ 99 (817)
..|++.|..+.+.. ....+.. ...+.+++...-... .....+|+.|.. .|.|.++++... .
T Consensus 2 s~i~l~d~~~~~~~--~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVL--DSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp -EEEEEETTTSSEE--EEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEE--EEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 35788888776531 2333333 456666665441100 000145776643 288999999884 1
Q ss_pred EEEEE--eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 100 QKIVL--QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 100 ~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
.+..+ ....++|.+++-- .+ .|+++.
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~-~~---------------------------------------------------~lv~~~ 105 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSF-NG---------------------------------------------------RLVVAV 105 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEE-TT---------------------------------------------------EEEEEE
T ss_pred EEEEEEEEeecCcceEhhhh-CC---------------------------------------------------EEEEee
Confidence 22221 2346888888776 33 555444
Q ss_pred CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCceeE
Q 003467 178 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCI 256 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~v 256 (817)
.+.|++|++.....+.....+.. ...+.++... +++++.|.....+.++.... +..+..+... .....+
T Consensus 106 -g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d------~~~~~v 175 (321)
T PF03178_consen 106 -GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARD------YQPRWV 175 (321)
T ss_dssp -TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEE------SS-BEE
T ss_pred -cCEEEEEEccCcccchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEec------CCCccE
Confidence 38999999986653433233322 2366666665 56999999888888875543 3334444432 356778
Q ss_pred EEeEEecCC-eEEEEcCCCcEEEEeCCC-------C--eEEEEeecC-ccCeeEE---EEec--CCC------EEEEEcc
Q 003467 257 WSLLSLRCG-TLVSADSTGSVQFWDSRH-------G--TLLQAHSFH-KGDVNAL---AAAP--SHN------RVFSTGS 314 (817)
Q Consensus 257 ~~v~~~~~~-~l~s~~~dg~i~iwd~~~-------~--~~~~~~~~h-~~~v~~l---~~s~--~~~------~l~~~~~ 314 (817)
.++.|.+++ .++.++.+|.+.++.... + ++......| ...|+++ ++.| .+. .++.++.
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~ 255 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV 255 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence 899999666 899999999999987652 2 222222222 3456666 5455 222 3777888
Q ss_pred CCcEEEEE
Q 003467 315 DGQVILYK 322 (817)
Q Consensus 315 dg~i~iw~ 322 (817)
+|.|...-
T Consensus 256 ~G~Ig~l~ 263 (321)
T PF03178_consen 256 DGSIGVLI 263 (321)
T ss_dssp TS-EEEEE
T ss_pred CCEEEEEE
Confidence 99988543
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.50 E-value=0.033 Score=52.84 Aligned_cols=211 Identities=12% Similarity=0.149 Sum_probs=125.2
Q ss_pred eeeeecCCCCeEEEEecCCCcEEEE-EcCC--ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec
Q 003467 484 VQVKSKASRKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH 560 (817)
Q Consensus 484 ~~~~~~~~~~i~~~~~s~~g~~la~-~~~~--~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~ 560 (817)
.+...........+.+..+|.++-. |.-| .++.+++.+ +.. .....++... -...++.. +++.....-.
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~---~~~~~l~~~~-FgEGit~~-~d~l~qLTWk 108 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKV---LQSVPLPPRY-FGEGITIL-GDKLYQLTWK 108 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSE---EEEEE-TTT---EEEEEEE-TTEEEEEESS
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcE---EEEEECCccc-cceeEEEE-CCEEEEEEec
Confidence 3333333344566777777777665 4334 566666554 322 2234444322 22334443 3344444456
Q ss_pred CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC----
Q 003467 561 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG---- 636 (817)
Q Consensus 561 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~---- 636 (817)
++...+||..+.+.+.++.- .+.=+.++ .||+.|+..+....++.+|.++.+....+.....
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv 174 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPY------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV 174 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred CCeEEEEccccceEEEEEec------------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence 89999999999999999874 45556666 5899999999899999999988876655543322
Q ss_pred CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCcc----CcchhcCCCceeEEEECCCCCCCEEEEEcC
Q 003467 637 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVL----PRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 712 (817)
Q Consensus 637 ~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~----~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~ 712 (817)
..++-|.|. +|...|=.=....|...|.++|+...|-.-....- ...-..-.+-..+|+++|. ..++++.|.
T Consensus 175 ~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~--~~~l~vTGK 250 (264)
T PF05096_consen 175 SNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE--TDRLFVTGK 250 (264)
T ss_dssp --EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT--TTEEEEEET
T ss_pred CCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC--CCEEEEEeC
Confidence 456778887 67777777777889999999998876644222100 0000111356799999996 678999999
Q ss_pred ceEEEEEc
Q 003467 713 RAMCVIDF 720 (817)
Q Consensus 713 ~~~~~~d~ 720 (817)
.|-.++.+
T Consensus 251 ~Wp~lyeV 258 (264)
T PF05096_consen 251 LWPKLYEV 258 (264)
T ss_dssp T-SEEEEE
T ss_pred CCCceEEE
Confidence 99555543
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.011 Score=65.60 Aligned_cols=191 Identities=13% Similarity=0.151 Sum_probs=105.8
Q ss_pred EEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccc
Q 003467 505 LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE 584 (817)
Q Consensus 505 ~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 584 (817)
.++.-+++.+..|+... .+.++..-..... ......+|++-+.+| +||+|+.+|.|++||--..+....|++
T Consensus 545 tflGls~n~lfriDpR~--~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~---- 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRL--SGNKLVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPG---- 616 (794)
T ss_pred eEEEECCCceEEeccCC--CCCceeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCC----
Confidence 34444666767776664 2333321111111 223356777766665 688899999999999432222233333
Q ss_pred ccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECC--Cc----c--------------e-EEEEecCCCC-----C
Q 003467 585 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE--IQ----R--------------Q-HWFISRLEGA-----S 638 (817)
Q Consensus 585 ~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~--~~----~--------------~-~~~~~~~~~~-----~ 638 (817)
...+|..|+++.||+||++.+. ..+.+++.. .+ + . +..+...|.. .
T Consensus 617 -------lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~ 688 (794)
T PF08553_consen 617 -------LGDPIIGIDVTADGKWILATCK-TYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHET 688 (794)
T ss_pred -------CCCCeeEEEecCCCcEEEEeec-ceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhcc
Confidence 6899999999999999987764 457777752 11 0 0 0011110110 1
Q ss_pred eEEEEecC-------CCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEc
Q 003467 639 VTAAGFPP-------QNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS 711 (817)
Q Consensus 639 i~~l~~sp-------~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~ 711 (817)
...+.|.| +.....++++...-+.+||+..-..+. .-+-.+......|.+-.|-- |....||+.-
T Consensus 689 ~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~-------~~~Y~ikry~~~V~~dnF~f-g~d~~vival 760 (794)
T PF08553_consen 689 GKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGK-------KDPYQIKRYDENVVADNFKF-GSDKNVIVAL 760 (794)
T ss_pred CCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCC-------CCceEEEEcCCceEEcccee-CCCCcEEEEc
Confidence 12234444 113456666777889999985432110 01344555666777766665 3445577765
Q ss_pred CceEEEEE
Q 003467 712 ARAMCVID 719 (817)
Q Consensus 712 ~~~~~~~d 719 (817)
.+.+.++.
T Consensus 761 ~~dV~m~~ 768 (794)
T PF08553_consen 761 PNDVNMVK 768 (794)
T ss_pred cchhhhhh
Confidence 55544443
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.47 E-value=0.14 Score=51.09 Aligned_cols=154 Identities=15% Similarity=0.229 Sum_probs=86.1
Q ss_pred CCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccC
Q 003467 502 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 502 ~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 581 (817)
.+..|+++...++.+|.......... -..++..++ ..+..++|. ++.+++|..++ ..+.|+.++.....+...
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp---~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLP---DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPS 176 (275)
T ss_pred cceEEEEEECCEEEEEEEECCccccc-ceeEEEEcC---CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCcc
Confidence 34567777777999999876211110 123444444 378888887 77788777555 889999877665444321
Q ss_pred ccccc-ccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 582 REEHD-REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 582 ~~~~~-~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
..... ........++..+.. +++.+|++-+ ..-...|..+.... ..+ .-. ..+.++++.. .+|++.+. +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~g~fv~~~G~~~r~~~i-~W~-~~p~~~~~~~---pyli~~~~-~ 247 (275)
T PF00780_consen 177 DSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NIGVFVNKNGEPSRKSTI-QWS-SAPQSVAYSS---PYLIAFSS-N 247 (275)
T ss_pred CCcchhhhcccCCCceEEEEe-CCceEEEEec--ceEEEEcCCCCcCcccEE-EcC-CchhEEEEEC---CEEEEECC-C
Confidence 10000 000011234444454 3456776543 33334455443322 122 112 3667777754 36666555 5
Q ss_pred eEEEEEcCCCcc
Q 003467 660 QVYVFDVEAKQL 671 (817)
Q Consensus 660 ~i~vwd~~~~~~ 671 (817)
.|.||++.++++
T Consensus 248 ~iEV~~~~~~~l 259 (275)
T PF00780_consen 248 SIEVRSLETGEL 259 (275)
T ss_pred EEEEEECcCCcE
Confidence 599999999986
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.45 E-value=0.053 Score=54.50 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=107.5
Q ss_pred EECCCCCeEEEEec-C--CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC
Q 003467 20 ATSADDSQVAAARE-D--GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY 96 (817)
Q Consensus 20 a~spdg~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~ 96 (817)
+|.+||++|+.++. + ..+.+-|+.+++. .+...+. ....-...++|+++. |+-......|...|++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i----~QLTdg~-g~~~~g~~~s~~~~~------~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEI----TQLTDGP-GDNTFGGFLSPDDRA------LYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EE----EE---SS--B-TTT-EE-TTSSE------EEEEETTTEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEE----EECccCC-CCCccceEEecCCCe------EEEEECCCeEEEEECC
Confidence 56789988887655 4 4566678888762 2222222 122224667788876 7666666789999999
Q ss_pred CCeEEEEEeecCceEEEEeeecC--CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 97 DLKQKIVLQSIDFSIWQMAVAPS--NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 97 ~~~~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
+++....+......+-...|..+ +..++-+... ..... .+. ..... ..+.
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~-~~d~~-------------~l~------~~~~f--------~e~~ 162 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEIS-REDWK-------------PLT------KWKGF--------REFY 162 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEE-GGG------------------------SHHHH--------HHHH
T ss_pred cCcEEEEEECCcccccccceeeCCCccEEEEEEEe-ehhcc-------------Ccc------ccHHH--------HHHH
Confidence 99887777777776665666533 3222111000 00000 000 00000 0000
Q ss_pred EEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-----cEEEEECCC-CceEEEEEeecCCC
Q 003467 175 LACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKL-GYEIYRITVGLGGL 248 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~-g~~~~~~~~~~~~~ 248 (817)
.+--...|.-.|+.+++. +.+-.-...+..+-|+|....+++=|..| .-|||-+.+ |.....+...
T Consensus 163 ~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---- 234 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---- 234 (386)
T ss_dssp HC---EEEEEEETTT--E----EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------
T ss_pred hhCCCceEEEEECCCCce----eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----
Confidence 001112344445555443 33333455778899999887777765543 136675543 4434333211
Q ss_pred CCCCceeEEEeEEecCC-eE--EEE---cCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEE
Q 003467 249 GSGPELCIWSLLSLRCG-TL--VSA---DSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l--~s~---~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~ 311 (817)
.....+..=.|.+|| .| .+. ..+..|.-+|..+++...... ......+-.++||++++-
T Consensus 235 --~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 235 --MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEE
T ss_pred --CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEe
Confidence 223445555688998 22 222 223347777888876543322 223445666788886554
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.11 Score=51.74 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=88.6
Q ss_pred ceeEEEEecCCCEEEEEec-----------CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEE
Q 003467 542 FAHSMIFSYDSSQLIIAGH-----------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 610 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 610 (817)
..+.....|||.+.+.... -|.|+.+|. .+..++.+.. +-...+.|+||||++.|..
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-----------~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-----------DLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-----------cEEecCceEECCCCCEEEE
Confidence 5567778888887765433 133555553 4555555554 4566788999999999888
Q ss_pred EeCC-CcEEEEECCC--c----ceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC-eEEEEEcCCCccccchhcccCcc
Q 003467 611 VNCF-GDVYIFNLEI--Q----RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHTFVL 682 (817)
Q Consensus 611 ~~~d-g~i~vwd~~~--~----~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~-~i~vwd~~~~~~~~ws~~~~~~~ 682 (817)
++.. +.|+-|+++. + +..........+..-.++... ++.+-+++..+| .|..|+.+ +++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l----------- 246 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL----------- 246 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE-----------
Confidence 8765 7788887762 1 111112122224555666666 776665554444 89999988 554
Q ss_pred CcchhcCCCceeEEEECCCCCCCEEEEEcCce
Q 003467 683 PRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 714 (817)
Q Consensus 683 ~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~ 714 (817)
...+.-....+++++|--. ....+++.++..
T Consensus 247 ~~~i~lP~~~~t~~~FgG~-~~~~L~iTs~~~ 277 (307)
T COG3386 247 LGEIKLPVKRPTNPAFGGP-DLNTLYITSARS 277 (307)
T ss_pred EEEEECCCCCCccceEeCC-CcCEEEEEecCC
Confidence 2333333356777888653 235555555544
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00077 Score=69.69 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=77.6
Q ss_pred CCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeE-EEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 593 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
...|..+.|+|.-..+|.+..+|.|.+..++ .+..|.++.+ +..++ +++|.| ||+.||+|-.||+|++-|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 4568889999999999999999999999999 7778888754 34566 999999 999999999999999999999875
Q ss_pred ccchhcccCccCcchhcCCCceeEEEECC
Q 003467 672 GEWSMQHTFVLPRRYQEFPGEVIGLSFSP 700 (817)
Q Consensus 672 ~~ws~~~~~~~~~~~~~~~~~v~~l~f~p 700 (817)
+.........+|..+.|+|
T Consensus 97 ----------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ----------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----------eeccccccccchheeeccc
Confidence 1222333456777888875
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.022 Score=59.52 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=128.1
Q ss_pred eEEEEecCCCcEEEEE--cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec---CCcEEEEE
Q 003467 494 IICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYVVD 568 (817)
Q Consensus 494 i~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~---dg~i~v~d 568 (817)
...+++++++..+.+. ..+.+.+.+... ..... ... .+. ....++++|+++.+.++.. ++++.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----~~~~~--~~~-vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----NTVLG--SIP-VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc----cceee--Eee-ecc--CCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 4567788888855553 468888888543 11111 111 111 4678899999998888766 68899999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEECCCcceEE-EE--ecCCCCCeEEEEe
Q 003467 569 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHW-FI--SRLEGASVTAAGF 644 (817)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~-~~--~~~~~~~i~~l~~ 644 (817)
..+++.+.+... -..+ ..++++|+|+.+.... .++.|.+.|.++..... .. ..........+.+
T Consensus 147 ~~t~~~~~~~~v-----------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 147 AATNKVTATIPV-----------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred CCCCeEEEEEec-----------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 999988888553 2233 8999999999777666 78899999987776542 10 0111245678899
Q ss_pred cCCCCCeEEEEecC---CeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcC
Q 003467 645 PPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 645 sp~d~~~l~~~~~d---~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
+| ++..+.+.... +.+...|..++....+ .. -.+.. ...++.++|+|.--.+.......+.++|..
T Consensus 215 ~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~--------~~-~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 215 DP-DGNRVYVANDGSGSNNVLKIDTATGNVTAT--------DL-PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CC-CCCEEEEEeccCCCceEEEEeCCCceEEEe--------cc-ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 99 88877666544 4899999998876331 00 11111 456789999864222222233667777765
Q ss_pred C
Q 003467 722 R 722 (817)
Q Consensus 722 ~ 722 (817)
.
T Consensus 284 ~ 284 (381)
T COG3391 284 T 284 (381)
T ss_pred C
Confidence 5
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.41 E-value=0.02 Score=58.56 Aligned_cols=169 Identities=14% Similarity=0.174 Sum_probs=99.7
Q ss_pred eeeeeeecCCCCeEEEEe---cCC----CcEEEEEcC-----------CceEEEEeecC-CCCCceEEEeeecCCccccc
Q 003467 482 LLVQVKSKASRKIICSTI---SNS----GMLFAYSDH-----------VKPSLFELKKG-KVGQGEWIINKRQLPRKLQF 542 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~---s~~----g~~la~~~~-----------~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 542 (817)
.+..+.....+.+.+++. ..+ -.++++|+. |.+.+|++... ....++..+..... .++
T Consensus 14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~---~g~ 90 (321)
T PF03178_consen 14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV---KGP 90 (321)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE---SS-
T ss_pred EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee---cCc
Confidence 445555555555555433 322 467776532 77889998762 11123222222333 346
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEEccCCc-eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 543 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 543 i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
|++++-- ++ +|+++. ++.|++|++...+ +...-... ....++++.. .++++++|+....|.++.
T Consensus 91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD----------SPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec----------ceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 8887654 34 455444 5789999998777 44332210 2335555555 566999999988899885
Q ss_pred CCC--cceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 622 LEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 622 ~~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
.+. .+....-.......++++.|-+ +++.++++..+|.+.++.....
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCC
Confidence 543 3333222233345789999997 5579999999999999998744
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.40 E-value=0.0096 Score=66.04 Aligned_cols=140 Identities=9% Similarity=0.086 Sum_probs=92.5
Q ss_pred eCCCcEEEEEecCCCceeEeeccCCccc-eEEEEEEcc-----CCCEEEEeeCCCcEEEEECCCCc-eEEEEEeecCCCC
Q 003467 177 CDDGCVRIYRITDSDELIYHRSLPRVSG-RVLSVTWSA-----DGNMLYSGSSDGYIRSWDAKLGY-EIYRITVGLGGLG 249 (817)
Q Consensus 177 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~s~-----dg~~l~s~~~dg~i~vwd~~~g~-~~~~~~~~~~~~~ 249 (817)
.....|+-.|++.|+.+ ....-|.. +|..++=.. +....+.|-.+..|..||.+-.. .+..-. ...
T Consensus 501 ~~~~~ly~mDLe~GKVV---~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~----~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV---EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ----SKQ 573 (794)
T ss_pred CCCCceEEEecCCCcEE---EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc----ccc
Confidence 34577888888776655 34443432 254443211 13345677778899999988532 211111 011
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
-.......|++-..+|.||.|+.+|.|++||--..+....+.+-..+|..|..+.||++|++.+.. .+.+++..
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence 134456788888999999999999999999954323334456778999999999999998877544 67777764
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.062 Score=51.02 Aligned_cols=213 Identities=12% Similarity=0.124 Sum_probs=131.3
Q ss_pred CCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEcc
Q 003467 491 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 570 (817)
Q Consensus 491 ~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~ 570 (817)
...+.++.++|+.+.|.+-.+.--.+-.+.. .|.. +....+.+ ......+.+.-+|++.++--.++.++++.+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~--~Gdl---irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK--EGDL---IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEec--CCce---EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 3568999999999998887776677777776 2333 33344444 3345678888888888877778999999887
Q ss_pred CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEE--ecCC-------CCCeEE
Q 003467 571 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRLE-------GASVTA 641 (817)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~--~~~~-------~~~i~~ 641 (817)
....+..+... ...-+.....+..--.++|+|..+.|..+-+..=+.||.+.....-... ...+ -..|.+
T Consensus 159 ~~t~~~~~~~~-~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQ-KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccce-EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 55333222211 0000111112556778999999999999988877888776543311111 1111 145778
Q ss_pred EEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcC---CCceeEEEECCCCCCCEEEEEcCceEEEE
Q 003467 642 AGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF---PGEVIGLSFSPSPSSSSVIIYSARAMCVI 718 (817)
Q Consensus 642 l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~---~~~v~~l~f~p~~~~~~~~~~~~~~~~~~ 718 (817)
+.|.+..+.+|+.+.+++.+...|.+..-...-+ +.+...+. .-..-+|+.+++|+ ..++.-.+-++++
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls------L~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlfy~F 309 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS------LTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLFYRF 309 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEE------eccCCCCCcccCCCcceeEECCCCC--EEEEecCCcceec
Confidence 8999867778888888889988998776432111 11112222 22456888888754 4444444444444
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.38 E-value=0.28 Score=52.38 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=56.9
Q ss_pred CCcEEEEEccCCce---eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-CC--cEEEEECCCcceEEEEecC
Q 003467 561 DRRIYVVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG--DVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 561 dg~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-dg--~i~vwd~~~~~~~~~~~~~ 634 (817)
++.|.-.++.+... ...+.. +...+.-..++..+.+|+.... ++ .|+++++..+.....++..
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~-----------~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p 368 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIP-----------EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP 368 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE-------------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS
T ss_pred CcEEEEecccccccccceeEEcC-----------CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCC
Confidence 35677777765542 223333 4443333334445666665543 33 5889999944444455554
Q ss_pred CCCCeEEEEecCCCCCeE-EEEecC---CeEEEEEcCCCccccc
Q 003467 635 EGASVTAAGFPPQNNNVL-IITTSS---NQVYVFDVEAKQLGEW 674 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~~~l-~~~~~d---~~i~vwd~~~~~~~~w 674 (817)
..+.|..+...+ +.+.+ +..++- .+++.||+.+++++.|
T Consensus 369 ~~g~v~~~~~~~-~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 369 EAGSVSGVSGDF-DSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp SSSEEEEEES-T-T-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred cceEEeccCCCC-CCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 445677777777 54444 333332 4899999999997554
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.0076 Score=65.95 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=58.7
Q ss_pred CceEEEEECCCCCeEEEEe------cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-
Q 003467 14 SPVVALATSADDSQVAAAR------EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI- 86 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~------~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~- 86 (817)
..+...++||||+.+|... .|+.-.||=...+.. ......+. ..+.-.|+|||+. |++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~---~~t~PsWspDG~~------lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH---SLTRPSWSLDADA------VWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC---CCCCceECCCCCc------eEEEecC
Confidence 3678899999999998765 244444443332221 12223332 4788999999876 665542
Q ss_pred -----------CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCcc
Q 003467 87 -----------DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSL 123 (817)
Q Consensus 87 -----------d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~ 123 (817)
.+.+.+.++..++... ...+.|..+.|||||..+
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~Ri 462 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRA 462 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEE
Confidence 2334444555544333 235679999999999654
No 376
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.34 E-value=6e-05 Score=77.45 Aligned_cols=146 Identities=19% Similarity=0.271 Sum_probs=95.6
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-CCEEEEeeC----CCcEEEEECCCCceEEEEEeecC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSS----DGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~----dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.+++|..+|.|.+-.......- ......+|....++++|++- ..+||.|-. |..+.|||+.++-....-...+.
T Consensus 72 IlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 8899999999999887632221 11445678889999999884 456666632 57899999987622111111011
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEe
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~ 323 (817)
. +......+++|..+. .+++|.....+.++|++.. +.......+..+..+.++| .++++++. .||.|.+||.
T Consensus 151 ~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~ 224 (783)
T KOG1008|consen 151 S---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDT 224 (783)
T ss_pred c---ccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccc
Confidence 1 133344578888777 5777888889999999821 1111122244566788888 66776665 4999999994
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.34 E-value=0.15 Score=48.49 Aligned_cols=197 Identities=19% Similarity=0.215 Sum_probs=120.5
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC--eEEEEECCCCeEEEEEeecC-ceEEEEeeecCCCccceee
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG--SVSEWDLYDLKQKIVLQSID-FSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~~~~~~ 127 (817)
...+++.....-..+|.|..+|.+ +-|.|.-| .|+.+|+.+|+......-.. .--..++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~L------yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-------- 100 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTL------YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-------- 100 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEE------EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--------
T ss_pred EEEECCCCCcccCccEEecCCCEE------EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--------
Confidence 455666555667788999888876 77777655 79999999998776554221 11112223222
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
......-.++...+||..+-+.+ .++.- .+.=+
T Consensus 101 -------------------------------------------~l~qLTWk~~~~f~yd~~tl~~~---~~~~y-~~EGW 133 (264)
T PF05096_consen 101 -------------------------------------------KLYQLTWKEGTGFVYDPNTLKKI---GTFPY-PGEGW 133 (264)
T ss_dssp -------------------------------------------EEEEEESSSSEEEEEETTTTEEE---EEEE--SSS--
T ss_pred -------------------------------------------EEEEEEecCCeEEEEccccceEE---EEEec-CCcce
Confidence 25556667889999999765444 33321 23344
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeE
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL 286 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 286 (817)
.++ .||+.|+.......|..+|..+-+...++.+...+ ..-..++.+.+. +| ..+=.-....|...|..+|+.
T Consensus 134 GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 134 GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred EEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC---EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 455 46777777666669999999998888888865332 223456667776 56 455555666788889999998
Q ss_pred EEEeec------------C---ccCeeEEEEecCCCEEEEEcc
Q 003467 287 LQAHSF------------H---KGDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 287 ~~~~~~------------h---~~~v~~l~~s~~~~~l~~~~~ 314 (817)
+..+.. + ..-.+.+|+.|..+.++..|.
T Consensus 208 ~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 208 VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 876521 0 234678999998887776654
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.32 E-value=0.14 Score=52.94 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=61.8
Q ss_pred EEEECCCCCeEEEEecCCcEEE---EecCC-CCCCcEEEE----EEcCCCCCcEEEEEEeecCCCC-----CCCceEEEe
Q 003467 18 ALATSADDSQVAAAREDGSLEI---WLVSP-GTSGWHCQL----TVHGDPKSRISSLVWCHAGKMG-----LPGGRLFSS 84 (817)
Q Consensus 18 ~la~spdg~~la~~~~dg~i~i---wd~~~-~~~~~~~~~----~~~g~~~~~V~~l~~s~~~~~~-----~~~~~l~s~ 84 (817)
.++.||++..||.|..+.-+.+ |+... +........ .+.......|+++.|-|-.... .+-..++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999988766666 64421 111111222 2222222589998887752211 122557788
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeec
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP 118 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~ 118 (817)
..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 88999999995 6666655555667776666543
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.28 E-value=6.9e-05 Score=77.03 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=126.3
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeE--EEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQ--KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
-+.|+++.-+.+. ..|+.|..+|.|.+-.+....- -....++....++++|++-..
T Consensus 58 y~kcva~~y~~d~----cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt------------------ 115 (783)
T KOG1008|consen 58 YVKCVASFYGNDR----CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT------------------ 115 (783)
T ss_pred CceeehhhcCCch----hhhhhccccCceEEeecCCcccccceecccccccccccccccccH------------------
Confidence 4566666655442 3488888899998877654321 234456778888999988643
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEe----CCCcEEEEEecCCCcee-EeeccCC-ccceEEEEEEcc
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC----DDGCVRIYRITDSDELI-YHRSLPR-VSGRVLSVTWSA 213 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~v~~s~ 213 (817)
+.||+|- .|..+.|||+.++-... ....+.+ -.....+++|..
T Consensus 116 -------------------------------n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr 164 (783)
T KOG1008|consen 116 -------------------------------NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR 164 (783)
T ss_pred -------------------------------HHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc
Confidence 2566664 36789999998551111 0111222 334556899999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-CCeEEEEcCCCcEEEEeC-CC-CeEEEEe
Q 003467 214 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CGTLVSADSTGSVQFWDS-RH-GTLLQAH 290 (817)
Q Consensus 214 dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~l~s~~~dg~i~iwd~-~~-~~~~~~~ 290 (817)
+.+.+++|.....+.++|++... ..... -....+..+.+.| .+..++...||.|.+||. .. ..+++.+
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~-~~~~s--------vnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSL-DSVSS--------VNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhh-hhhhh--------hhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHH
Confidence 99999999999999999987221 11111 1333556677777 445556666999999993 32 1222222
Q ss_pred ecCc----cCeeEEEEecCCC-EEEEEcc-CCcEEEEEeecc
Q 003467 291 SFHK----GDVNALAAAPSHN-RVFSTGS-DGQVILYKASCE 326 (817)
Q Consensus 291 ~~h~----~~v~~l~~s~~~~-~l~~~~~-dg~i~iw~~~~~ 326 (817)
.... ..+..++|+|..+ .+++... .++|+++++..-
T Consensus 236 ~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 236 LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 2212 2488999999543 3444443 678888887653
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.28 E-value=0.2 Score=50.03 Aligned_cols=232 Identities=16% Similarity=0.139 Sum_probs=128.7
Q ss_pred CCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEE
Q 003467 23 ADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKI 102 (817)
Q Consensus 23 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 102 (817)
..+++|++|..+| |.+++...... ...... ...|+.|...|+-+. |++-+ |+.+.++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~---~~~i~~---~~~I~ql~vl~~~~~------llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK---PTRILK---LSSITQLSVLPELNL------LLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc---ceeEee---cceEEEEEEecccCE------EEEEc-CCccEEEEchhhcccc
Confidence 3578999999888 99999833221 122222 234999999988765 66655 4999999998755443
Q ss_pred EEe--------------ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 103 VLQ--------------SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 103 ~~~--------------~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
... .....+...+. ..+ ..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~-~~~----------------------------------------------~~ 103 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAV-NGG----------------------------------------------HE 103 (275)
T ss_pred ccccccccccccccccccccCCeeEEee-ccc----------------------------------------------cc
Confidence 110 01112222220 000 00
Q ss_pred cCCEEEEEeCCCcEEEEEecCC-Cce-eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 169 EDRRVALACDDGCVRIYRITDS-DEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~-~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
....|+++.. ..|.+|..... ... ...+.+. -...+.+++|. ++.|+.|..+ ...+.|+.++....-+.....
T Consensus 104 ~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 104 GSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred cceEEEEEEC-CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCC
Confidence 1125555555 48999988743 122 2223332 23678899998 5677777765 688899987766544322110
Q ss_pred C----CCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEE--EeecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 247 G----LGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ--AHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 247 ~----~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
. .......++..+....+..|++.+ ..-.+.|. .|+..+ .+.. ......+++. ..+|++.+.+ .|.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~~-~iEV 251 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLSDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSSN-SIEV 251 (275)
T ss_pred cchhhhcccCCCceEEEEeCCceEEEEec--ceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECCC-EEEE
Confidence 0 000122233344443333455432 23333344 354433 4444 3355666664 4578777664 5999
Q ss_pred EEeeccc
Q 003467 321 YKASCES 327 (817)
Q Consensus 321 w~~~~~~ 327 (817)
|++.+++
T Consensus 252 ~~~~~~~ 258 (275)
T PF00780_consen 252 RSLETGE 258 (275)
T ss_pred EECcCCc
Confidence 9999987
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.20 E-value=0.11 Score=50.63 Aligned_cols=193 Identities=16% Similarity=0.073 Sum_probs=110.7
Q ss_pred CCeEEEEecCCCcEEEEEc--CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEE-
Q 003467 492 RKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD- 568 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d- 568 (817)
..+.+.++|+||+.+|+-. ++.-.||-..... .... .+ ....+....|++++...+....+....++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~------~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRP------VL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-ccee------ec--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence 4688999999999887744 6666666665421 2211 11 122577778999988877777666666663
Q ss_pred ccCCceee-eeccCcccccccCCCCCCceeEEEEccCCCEEEEEe---CCCcEEEEECC---Cc-ceE----EEEecCCC
Q 003467 569 VSSSELLH-TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CFGDVYIFNLE---IQ-RQH----WFISRLEG 636 (817)
Q Consensus 569 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---~dg~i~vwd~~---~~-~~~----~~~~~~~~ 636 (817)
..+++... .+... .....|+.+.+||||..+|... .++.|.|=-+. .+ ... ..+.....
T Consensus 95 ~~~g~~~~~~v~~~---------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 95 SASGTGEPVEVDWP---------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cCCCcceeEEeccc---------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 33333221 11110 0122899999999999998876 34677776553 22 111 11111123
Q ss_pred CCeEEEEecCCCCCeEEEEecCC-eEEE-EEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCce
Q 003467 637 ASVTAAGFPPQNNNVLIITTSSN-QVYV-FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 714 (817)
Q Consensus 637 ~~i~~l~~sp~d~~~l~~~~~d~-~i~v-wd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~ 714 (817)
..+++++|.+ ++.+++.+...+ .+.. ..+..+.. ..+..-...+.-++...+ +..+++.++..
T Consensus 166 ~~v~~v~W~~-~~~L~V~~~~~~~~~~~~v~~dG~~~------------~~l~~~~~~~~v~a~~~~--~~~~~~t~~~~ 230 (253)
T PF10647_consen 166 SDVTDVAWSD-DSTLVVLGRSAGGPVVRLVSVDGGPS------------TPLPSVNLGVPVVAVAAS--PSTVYVTDDGG 230 (253)
T ss_pred CcceeeeecC-CCEEEEEeCCCCCceeEEEEccCCcc------------cccCCCCCCcceEEeeCC--CcEEEEECCCc
Confidence 5889999999 777666665443 2333 55555543 223222223333333332 34477777777
Q ss_pred EEE
Q 003467 715 MCV 717 (817)
Q Consensus 715 ~~~ 717 (817)
++.
T Consensus 231 ~~~ 233 (253)
T PF10647_consen 231 VLQ 233 (253)
T ss_pred EEE
Confidence 775
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.12 E-value=0.34 Score=48.00 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=73.2
Q ss_pred CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEE
Q 003467 200 PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 279 (817)
Q Consensus 200 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iw 279 (817)
..-.+.+..+.-++||++++++..-....-||--...-...-. .....|.++.|.|++.|......|.|++=
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--------~~~~riq~~gf~~~~~lw~~~~Gg~~~~s 212 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--------NSSRRIQSMGFSPDGNLWMLARGGQIQFS 212 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEETTTEEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--------CccceehhceecCCCCEEEEeCCcEEEEc
Confidence 3445788999999999999888766566678743211121111 46788999999999977666788989888
Q ss_pred eC-CCCeEEEE----eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 280 DS-RHGTLLQA----HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 280 d~-~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
+. .....-.. +....-.+..+++.+++...++| ..|.+ +...+.+ +.|........-..
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgG--------------ktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGG--------------KTWQKDRVGENVPS 276 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTT--------------SS-EE-GGGTTSSS
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCC--------------ccceECccccCCCC
Confidence 72 22222111 11223347899999887766655 45543 3344443 45766666555566
Q ss_pred ccceeEee
Q 003467 355 DVRALTVA 362 (817)
Q Consensus 355 ~v~~l~~~ 362 (817)
....+.|.
T Consensus 277 n~~~i~f~ 284 (302)
T PF14870_consen 277 NLYRIVFV 284 (302)
T ss_dssp ---EEEEE
T ss_pred ceEEEEEc
Confidence 67788874
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.07 E-value=0.0013 Score=42.01 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=32.5
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEe
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWL 41 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd 41 (817)
...+..|...|++++|++++.++++++.|+.+.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445678999999999999999999999999999996
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.35 Score=45.68 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCc-EEEEeCCCCeEEEEeecCccC--eeEEEEecCCCE
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS-VQFWDSRHGTLLQAHSFHKGD--VNALAAAPSHNR 308 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~-i~iwd~~~~~~~~~~~~h~~~--v~~l~~s~~~~~ 308 (817)
.|+++....++ ..-..++++|.. .++.+-.-|+ ..++|....+...++...++. --.=.|||||.+
T Consensus 57 aGk~v~~~~lp---------aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~ 127 (366)
T COG3490 57 AGKIVFATALP---------ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRL 127 (366)
T ss_pred CCceeeeeecc---------cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcE
Confidence 46666666532 223346666655 3455555555 567888887777665432221 122479999999
Q ss_pred EEEEcc-----CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 309 VFSTGS-----DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 309 l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
|+..-. -|.|-+||...+- ..+..+..|.-.--.+.+.
T Consensus 128 LYATEndfd~~rGViGvYd~r~~f----------------qrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGF----------------QRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred EEeecCCCCCCCceEEEEeccccc----------------ceecccccCCcCcceeEEe
Confidence 987533 3778999987543 1556666665555555555
No 385
>PRK13684 Ycf48-like protein; Provisional
Probab=96.96 E-value=0.56 Score=47.96 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=64.1
Q ss_pred cceEEEEEEccCCCEEEEeeCCCcEEE-EECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 203 SGRVLSVTWSADGNMLYSGSSDGYIRS-WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 203 ~~~v~~v~~s~dg~~l~s~~~dg~i~v-wd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
.+.+.++.+.|++.+++++. .|.+.. ++ ..++.-..+.. .....+.++.+.+++.++..+..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 56789999999987766654 455443 22 22332323321 4567889999999997666677787654333
Q ss_pred CCCeEEEEeec----CccCeeEEEEecCCCEEEEEccCCcEE
Q 003467 282 RHGTLLQAHSF----HKGDVNALAAAPSHNRVFSTGSDGQVI 319 (817)
Q Consensus 282 ~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~~~~~dg~i~ 319 (817)
..|..-..... ....+..+++.+++. ++.++.+|.+.
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL 283 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence 33332221111 123577889998776 45555777654
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.96 E-value=0.0024 Score=40.67 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=34.6
Q ss_pred CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 284 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 284 ~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
++.+..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788899999999999999999999999999995
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.94 E-value=0.58 Score=47.84 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=59.2
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC----CeE-EEEcCC------
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC----GTL-VSADST------ 273 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~----~~l-~s~~~d------ 273 (817)
.-++|+|.|||+++++ ...|.|++++ ..+.....+... .......+.....+++.|+ +.| ++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~-~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADL-PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE--TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccc-ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 3578999999987765 5599999999 555542222211 1222345677899999995 533 332211
Q ss_pred --CcEEEEeCCCC-------e-EEEEeec---CccCeeEEEEecCCCEEEEEccCCc
Q 003467 274 --GSVQFWDSRHG-------T-LLQAHSF---HKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 274 --g~i~iwd~~~~-------~-~~~~~~~---h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
..|.-|....+ + .+..+.. ....-..|+|.|||.+.++.|..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12333433322 1 1122222 2334567999999966666655544
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.92 E-value=0.14 Score=49.82 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=88.0
Q ss_pred ceEEEEECCCCCeEEEEe-cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 15 PVVALATSADDSQVAAAR-EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
.+...|+|+||+.+|... .++.-.+|-...+.. ....+. ...++...|++++.. .+....+....++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---~~~~~~---g~~l~~PS~d~~g~~------W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---VRPVLT---GGSLTRPSWDPDGWV------WTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---ceeecc---CCccccccccCCCCE------EEEEcCCCceEEE
Confidence 689999999999888765 223334443333332 122233 348889999999765 5555555556666
Q ss_pred E-CCCCeEE-EEEeec--CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 94 D-LYDLKQK-IVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 94 d-~~~~~~~-~~~~~~--~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
. ..++... ..+... .+.|..+++||||.+++
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA--------------------------------------------- 127 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVA--------------------------------------------- 127 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEE---------------------------------------------
Confidence 3 3333322 222222 12899999999997543
Q ss_pred CCEEEEEeCCCcEEEEEecC--CC-ceeE---eeccCCccceEEEEEEccCCCEEEEeeCC
Q 003467 170 DRRVALACDDGCVRIYRITD--SD-ELIY---HRSLPRVSGRVLSVTWSADGNMLYSGSSD 224 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~--~~-~~~~---~~~~~~h~~~v~~v~~s~dg~~l~s~~~d 224 (817)
+++....++.|.+=-+.. .. .... ..........+..++|.+++.+++.+...
T Consensus 128 --~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 128 --VVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred --EEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 222233456666665541 11 1110 11222335689999999999877776554
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.45 Score=45.43 Aligned_cols=203 Identities=14% Similarity=0.082 Sum_probs=122.9
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
+-...|.++.|+|+.+.|.+-...+.-.||=...|+ ...+++-..-..-.++++..+|++ .++--.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd----lirtiPL~g~~DpE~Ieyig~n~f------vi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD----LIRTIPLTGFSDPETIEYIGGNQF------VIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCc----eEEEecccccCChhHeEEecCCEE------EEEehhcceE
Confidence 344669999999999999888877877788777777 455555333456678889998887 6666667888
Q ss_pred EEEECCCCeEEEEE-------ee--c-CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 91 SEWDLYDLKQKIVL-------QS--I-DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 91 ~vwd~~~~~~~~~~-------~~--~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
.+..++.......+ .. + ......+||.|..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~---------------------------------------- 192 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD---------------------------------------- 192 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC----------------------------------------
Confidence 88777654322111 11 1 3345667777776
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-------ceEEEEEEccCCC-EEEEeeCCCcEEEEEC
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-------GRVLSVTWSADGN-MLYSGSSDGYIRSWDA 232 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~ 232 (817)
..|..+-+..-+.||.+..............++ ..|.++.|++... .|+-+.+++.+.-.|.
T Consensus 193 ----------~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 193 ----------HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ----------ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 478888888888888886332111111111222 2477788887544 4555555677777775
Q ss_pred CCCceEEEEEeecCCCCC-CCceeEEEeEEecCCeEEEEcCCC
Q 003467 233 KLGYEIYRITVGLGGLGS-GPELCIWSLLSLRCGTLVSADSTG 274 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~l~s~~~dg 274 (817)
.|..+..+....+.... ..-.....++..++|.|...++-+
T Consensus 263 -~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 263 -SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred -CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 46656666543322111 111233445666666554444433
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.018 Score=63.90 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEE
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 103 (817)
.+.++|.|+..|.|-..|+.+.- .| ..-..+.+++|++++|+.+|.. ++.|-.+|.|.+||..+++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL-~~---~~~ne~v~~~Vtsvafn~dg~~------l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL-GP---LHQNERVQGPVTSVAFNQDGSL------LLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc-ch---hhcCCccCCcceeeEecCCCce------eccccCCCcEEEEEccCCcceee
Confidence 46688999999999888876531 11 1222234689999999999987 88888999999999999999999
Q ss_pred EeecCceEEEEee
Q 003467 104 LQSIDFSIWQMAV 116 (817)
Q Consensus 104 ~~~~~~~i~~~~~ 116 (817)
+..|+.+...+-+
T Consensus 168 i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIF 180 (1206)
T ss_pred eeecCCccceEEE
Confidence 9887766555433
No 391
>PRK10115 protease 2; Provisional
Probab=96.80 E-value=0.87 Score=51.69 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=48.6
Q ss_pred ceEEEEECCCCCeEEEEec-----CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC--
Q 003467 15 PVVALATSADDSQVAAARE-----DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID-- 87 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d-- 87 (817)
.+..+.+||||++||.+.. ...|.+-|+.++.. +...+.+. . ..++|++|++. |+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---l~~~i~~~---~-~~~~w~~D~~~------~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---YPELLDNV---E-PSFVWANDSWT------FYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---CCccccCc---c-eEEEEeeCCCE------EEEEEecCC
Confidence 4777899999999998733 34588889988763 12233322 2 45999999976 5554332
Q ss_pred ----CeEEEEECCCC
Q 003467 88 ----GSVSEWDLYDL 98 (817)
Q Consensus 88 ----~~i~vwd~~~~ 98 (817)
..|..+++.++
T Consensus 195 ~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 195 TLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCCCEEEEEECCCC
Confidence 36888888887
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.16 Score=47.83 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=90.8
Q ss_pred ceeEEEEecCC-CEEEEEecCC-cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC-----
Q 003467 542 FAHSMIFSYDS-SQLIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF----- 614 (817)
Q Consensus 542 ~i~~~~fspd~-~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d----- 614 (817)
....|+|+|-. .-++.+-.-| ...++|....+...++....+ .. ---.=+|||||.+|.+.-.|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~---RH------fyGHGvfs~dG~~LYATEndfd~~r 139 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG---RH------FYGHGVFSPDGRLLYATENDFDPNR 139 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC---ce------eecccccCCCCcEEEeecCCCCCCC
Confidence 45677888854 4455565555 467899888877766654211 11 12233799999999887543
Q ss_pred CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEec------C-C-----------eEEEEEcCCCccccchh
Q 003467 615 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS------S-N-----------QVYVFDVEAKQLGEWSM 676 (817)
Q Consensus 615 g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~------d-~-----------~i~vwd~~~~~~~~ws~ 676 (817)
|.|-|||...+-.+.--...|+-....+.|.+ ||..|+++.. | | .+.+.|..++++.+
T Consensus 140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie--- 215 (366)
T COG3490 140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE--- 215 (366)
T ss_pred ceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh---
Confidence 78999998755433222233556678899999 9999988743 1 1 23344444444411
Q ss_pred cccCccCcchhcCCCceeEEEECCCCCCCEEEEE
Q 003467 677 QHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY 710 (817)
Q Consensus 677 ~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~ 710 (817)
+..+|.. -+.-.+.++...+||. ||+-
T Consensus 216 --kh~Lp~~--l~~lSiRHld~g~dgt---vwfg 242 (366)
T COG3490 216 --KHTLPAS--LRQLSIRHLDIGRDGT---VWFG 242 (366)
T ss_pred --hccCchh--hhhcceeeeeeCCCCc---EEEE
Confidence 1122221 2345788999988764 6654
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.75 E-value=0.005 Score=40.92 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCC
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGT 46 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~ 46 (817)
.-++.|.+++|+|...+||+|..+|.|.|+.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34678999999999999999999999999998 444
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.73 E-value=0.17 Score=55.91 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=33.7
Q ss_pred CEEEEEeCC------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-----cEEEEECCCCce
Q 003467 171 RRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYE 237 (817)
Q Consensus 171 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~g~~ 237 (817)
...++|+.+ ..+..||..++.. .....+.........+ .-+|+..+.|+.++ ++..||..+++-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 356666643 3477788765432 2222222111122222 23677777787654 478899876643
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.71 E-value=0.21 Score=45.64 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=62.9
Q ss_pred eEEEEEEccCCCEEEEe-eCCCcEEEEE--CCCCceE-----EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 205 RVLSVTWSADGNMLYSG-SSDGYIRSWD--AKLGYEI-----YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~-~~dg~i~vwd--~~~g~~~-----~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
--..++|+.|.+.+... +.+-+|.-|| ..+|... ..+... +. ..+..--.++...+| ..++.-..++
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~---~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QP---FESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CC---cCCCCCCcceEccCCcEEEEEecCcE
Confidence 34578999887766554 4466787787 5666543 222210 00 011111223334456 5677777889
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEec
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~ 304 (817)
|...|..+|+.+..++-....|+|+||--
T Consensus 235 V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 99999999999999999999999999963
No 396
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.52 E-value=1.2 Score=45.55 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=99.9
Q ss_pred CCeEEEEec-CCCcEEEEEcCCc------eEEEEeecCCCCCceEEE-eeecCCcccc--------ceeEEEEecCCCEE
Q 003467 492 RKIICSTIS-NSGMLFAYSDHVK------PSLFELKKGKVGQGEWII-NKRQLPRKLQ--------FAHSMIFSYDSSQL 555 (817)
Q Consensus 492 ~~i~~~~~s-~~g~~la~~~~~~------i~l~~~~~~~~~~~~~~~-~~~~~~~~~~--------~i~~~~fspd~~~l 555 (817)
..+..+.+. .+++++++++++. +..+.+........-..+ ....+....+ -..+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 456778888 5778888888877 666665541111111111 1111211111 34578887788888
Q ss_pred EEEecC------CcEEEEEccCCceeeeeccCccccc----ccCCCCCCceeEEEEccCCCEEEEEeCC-----C--c--
Q 003467 556 IIAGHD------RRIYVVDVSSSELLHTFTPCREEHD----REIQPSEPPITKMFTSSDGQWLAAVNCF-----G--D-- 616 (817)
Q Consensus 556 ~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~s~dg~~la~~~~d-----g--~-- 616 (817)
++.-.+ ..|+.++.. |+.+..+........ ......+...-+|+++|||+.|.++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776556 678888866 777766633221100 0122356778999999999977665432 2 1
Q ss_pred -----EEE--EECCC-c--ceEEEEecC------CCCCeEEEEecCCCCCeEEEEec-----CCeEEEEEcCC
Q 003467 617 -----VYI--FNLEI-Q--RQHWFISRL------EGASVTAAGFPPQNNNVLIITTS-----SNQVYVFDVEA 668 (817)
Q Consensus 617 -----i~v--wd~~~-~--~~~~~~~~~------~~~~i~~l~~sp~d~~~l~~~~~-----d~~i~vwd~~~ 668 (817)
++| ||..+ + ...+..+.. ....|+.+.+-+ ++++|+.-=. ...+++|.+.-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEEc
Confidence 444 45544 2 122223222 246889999999 8887666422 34566665543
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.45 E-value=1.3 Score=45.31 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=38.4
Q ss_pred EEEeEEecCCeEEEEcCCCcEEEEeCCCCeE---EEEe----ecCccCeeEEEEecC---CCEEEEEcc
Q 003467 256 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAH----SFHKGDVNALAAAPS---HNRVFSTGS 314 (817)
Q Consensus 256 v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~----~~h~~~v~~l~~s~~---~~~l~~~~~ 314 (817)
.++|+|.|||.++.+...|.|++++ ..+.. +..+ .........++++|+ ..+|++...
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 5789999999888888899999999 44443 2232 123456789999994 345554433
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.39 E-value=0.01 Score=39.44 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=30.4
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 627 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~ 627 (817)
....|..++|+|...+||.+..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999999 4443
No 399
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.37 E-value=1.2 Score=46.68 Aligned_cols=231 Identities=17% Similarity=0.147 Sum_probs=122.0
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEE
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 103 (817)
||+ +.++..+|.|.-.|..++...|...... ....+.+-.+..+|+ |+.++.++.+...|..+|+.+..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~-------i~~g~~~g~~y~ld~~~G~~~W~ 136 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGK-------IYVGSWDGKLYALDASTGTLVWS 136 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCe-------EEEecccceEEEEECCCCcEEEE
Confidence 444 4444667878888888877545322221 012233333444554 88888999999999989998888
Q ss_pred EeecC-ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcE
Q 003467 104 LQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 182 (817)
Q Consensus 104 ~~~~~-~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 182 (817)
..... ..+..-.+-.++ .+..++.+|.+
T Consensus 137 ~~~~~~~~~~~~~v~~~~---------------------------------------------------~v~~~s~~g~~ 165 (370)
T COG1520 137 RNVGGSPYYASPPVVGDG---------------------------------------------------TVYVGTDDGHL 165 (370)
T ss_pred EecCCCeEEecCcEEcCc---------------------------------------------------EEEEecCCCeE
Confidence 77655 111111222222 45555566777
Q ss_pred EEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCC--ceeEEE
Q 003467 183 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGP--ELCIWS 258 (817)
Q Consensus 183 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~--~~~v~~ 258 (817)
...+..++...-.......-...+..--...+ ..++.+.. ++.+.-.|..+|................. ...+..
T Consensus 166 ~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~ 244 (370)
T COG1520 166 YALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDG 244 (370)
T ss_pred EEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccC
Confidence 77776655543221111100111111111223 34444444 66788888888988877432111000000 011111
Q ss_pred eEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE---ccCCcEEEEEeec
Q 003467 259 LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST---GSDGQVILYKASC 325 (817)
Q Consensus 259 v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~---~~dg~i~iw~~~~ 325 (817)
-...-++.+..++.++.+...|..+|+.+..+... ..-++..+.+. ..||.+.++....
T Consensus 245 ~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~--------~~~~~~~~~~~~~~~~dG~v~~~~~~~ 306 (370)
T COG1520 245 GPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG--------GSVQGSGLYTTPVAGADGKVYIGFTDN 306 (370)
T ss_pred ceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc--------cEeccCCeeEEeecCCCccEEEEEecc
Confidence 12222445677788888999999999999888764 11111122222 2588888876544
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.059 Score=55.13 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=95.5
Q ss_pred CCCeEE-EEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCC-CCceEEEeeCCCeEEEEECCC-Ce-
Q 003467 24 DDSQVA-AAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGL-PGGRLFSSSIDGSVSEWDLYD-LK- 99 (817)
Q Consensus 24 dg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~- 99 (817)
+.++|. .+.....+.--|+..|+ .+-...-+ ..|.-+.+.|+.+..+ ....-+.|-.|..|+-||..- ++
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GK----IVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGK----IVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred ccceEeeCCCCcCcceeeecccce----eeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 444443 34444557777888887 34555544 3488888999877521 111123344577899999752 22
Q ss_pred EEEEEeecC----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 100 QKIVLQSID----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 100 ~~~~~~~~~----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
.+...++|. ....|.+-..+| ++|+
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT~sG---------------------------------------------------~Ivv 446 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATTESG---------------------------------------------------YIVV 446 (644)
T ss_pred eeeeeeccccccccccceeeecCCc---------------------------------------------------eEEE
Confidence 222223332 334455555555 9999
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
|+.+|-|++||-. +..- ...+++-..+|..|..+.||++|+..|.. .+.+-++
T Consensus 447 gS~~GdIRLYdri-~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 447 GSLKGDIRLYDRI-GRRA--KTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eecCCcEEeehhh-hhhh--hhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 9999999999974 3322 26688888999999999999999887754 6666554
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=1.3 Score=43.88 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=84.2
Q ss_pred cCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEE
Q 003467 489 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD 568 (817)
Q Consensus 489 ~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d 568 (817)
.....+..+..++||++++++..+.+.+-- +.+...|...... ....+..|.|+||+...+++ ..|.|+.=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~----~~G~~~w~~~~r~---~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSW----DPGQTTWQPHNRN---SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-----TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEe----cCCCccceEEccC---ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 333668888899999999999888865321 2355566655433 23479999999998876654 788888877
Q ss_pred c-cCCceeee-eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--CCCeEEEEe
Q 003467 569 V-SSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGF 644 (817)
Q Consensus 569 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~i~~l~~ 644 (817)
. ...+.-.. +.+. ....-.+..++|.+++...|+|+. | ..+...+.++.-...+... .+....+.|
T Consensus 214 ~~~~~~~w~~~~~~~--------~~~~~~~ld~a~~~~~~~wa~gg~-G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 214 DPDDGETWSEPIIPI--------KTNGYGILDLAYRPPNEIWAVGGS-G-TLLVSTDGGKTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp -TTEEEEE---B-TT--------SS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred CCCCccccccccCCc--------ccCceeeEEEEecCCCCEEEEeCC-c-cEEEeCCCCccceECccccCCCCceEEEEE
Confidence 2 21211111 1110 012345889999999888886654 4 3455667777655554433 246888999
Q ss_pred cCCCCCeEEEEecCCeEEEE
Q 003467 645 PPQNNNVLIITTSSNQVYVF 664 (817)
Q Consensus 645 sp~d~~~l~~~~~d~~i~vw 664 (817)
.+ + +.-.+.+.+|.|.-|
T Consensus 284 ~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 284 VN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EE-T-TEEEEE-STTEEEEE
T ss_pred cC-C-CceEEECCCcEEEEe
Confidence 86 4 456677788877655
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.21 E-value=0.66 Score=51.14 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=83.8
Q ss_pred CEEEEEeCC------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-----cEEEEECCCCceEE
Q 003467 171 RRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYEIY 239 (817)
Q Consensus 171 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~g~~~~ 239 (817)
...++|+.| ..+..||..++.... ...+.......-... -+|..-|+|+.|| +|-.||..+.+-..
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 478888888 367778887555321 222222222222222 2678888898886 47778876654332
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC------cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG------SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
.-.. .....-.+++.. +| ..++|+.++ ++..||..+++....-.........-+..-++...+.|
T Consensus 411 va~m-------~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvG 482 (571)
T KOG4441|consen 411 VAPM-------LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVG 482 (571)
T ss_pred cCCC-------CcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEEC
Confidence 2211 011111222222 45 566776444 47788888765433322212111111223357777778
Q ss_pred ccCCc-----EEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeE
Q 003467 313 GSDGQ-----VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 360 (817)
Q Consensus 313 ~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 360 (817)
|.|+. |..||..+ .+|..+.........+...+
T Consensus 483 G~~~~~~~~~VE~ydp~~---------------~~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPET---------------NQWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred CccCCCccceEEEEcCCC---------------CceeEcccCccccccccEEE
Confidence 87763 44454444 56877755554444333333
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.092 Score=58.61 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=71.4
Q ss_pred EEEeeCCCeEEEEECCCC-eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 81 LFSSSIDGSVSEWDLYDL-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
++.++..|.|-..|+... .+...-..-.++|.+++|+.+|
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--------------------------------------- 142 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--------------------------------------- 142 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC---------------------------------------
Confidence 788888888888887652 2222223346899999999999
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
..++.|-.+|.|.+||+..+..+............|..+.+..++..++++...|. +|.+.
T Consensus 143 -----------~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 143 -----------SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred -----------ceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 48999999999999999977777333222222234555666667778888887776 66553
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.14 E-value=0.36 Score=53.29 Aligned_cols=144 Identities=8% Similarity=0.038 Sum_probs=72.5
Q ss_pred CEEEEEeCCC-----cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC--------------------
Q 003467 171 RRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-------------------- 225 (817)
Q Consensus 171 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-------------------- 225 (817)
...+.|+.++ .+..||..++. ......+.........++ -+|+..+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence 4667777654 47788887543 222222222111122222 2577777777542
Q ss_pred ---cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC------CcEEEEeCCC-Ce--EEEEeecC
Q 003467 226 ---YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRH-GT--LLQAHSFH 293 (817)
Q Consensus 226 ---~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d------g~i~iwd~~~-~~--~~~~~~~h 293 (817)
.+..||..+.+-...-.. .....-.+++...+...+.|+.+ ..+..||.++ .+ .+..+...
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m-------~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNF-------WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred ccceEEEECCCCCeEeecCCC-------CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 467788776543221111 01111112333334455666653 2367899886 33 33444433
Q ss_pred ccCeeEEEEecCCCEEEEEccCC--cEEEEEeecc
Q 003467 294 KGDVNALAAAPSHNRVFSTGSDG--QVILYKASCE 326 (817)
Q Consensus 294 ~~~v~~l~~s~~~~~l~~~~~dg--~i~iw~~~~~ 326 (817)
.......++ +++..++||.++ .+-.||..+.
T Consensus 503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 333333333 677778888888 5555665553
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.07 E-value=1.6 Score=49.63 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=52.2
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC---CCcEEEEEEeec--CCC--------CCCCceEEEeeCCCeEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP---KSRISSLVWCHA--GKM--------GLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~---~~~V~~l~~s~~--~~~--------~~~~~~l~s~~~d~~i~ 91 (817)
+..|.+++.++.|.-.|..+|+..|.......... ......+++... +.. .....|++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788899999999998776543322110 011233444321 100 01124799999999999
Q ss_pred EEECCCCeEEEEEee
Q 003467 92 EWDLYDLKQKIVLQS 106 (817)
Q Consensus 92 vwd~~~~~~~~~~~~ 106 (817)
-.|.++|+....+..
T Consensus 274 ALDA~TGk~~W~fg~ 288 (764)
T TIGR03074 274 ALDADTGKLCEDFGN 288 (764)
T ss_pred EEECCCCCEEEEecC
Confidence 999999998887753
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.0062 Score=55.15 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGS 250 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~ 250 (817)
.+...+.+|.|+-+++.... ...+.-.-|...-.-+ .-+.-|+.|+.+|.|.+|+..- |........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k--~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------- 99 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK--ESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------- 99 (238)
T ss_pred hhccccCCcccccchhhhhh--hhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhc-------
Confidence 44455667777766664111 1111111122211112 2246788999999999998762 222111110
Q ss_pred CCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCCEEEEE--ccCCcEEEEEeecc
Q 003467 251 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFST--GSDGQVILYKASCE 326 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~~~--~~dg~i~iw~~~~~ 326 (817)
..+.....+.-..++ ...+++.+|.|+.|+.+-++.+.....|+ .++..+..+..++.+..+ +.|..++.|++...
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222222333333344 67889999999999999988888888887 666666666666777777 77778888877654
Q ss_pred c
Q 003467 327 S 327 (817)
Q Consensus 327 ~ 327 (817)
.
T Consensus 180 ~ 180 (238)
T KOG2444|consen 180 K 180 (238)
T ss_pred h
Confidence 3
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.09 Score=53.88 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=97.1
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-------EEEEeeCCCcEEEEECCC-CceEEEEEe
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-------MLYSGSSDGYIRSWDAKL-GYEIYRITV 243 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-------~l~s~~~dg~i~vwd~~~-g~~~~~~~~ 243 (817)
.+..+.....++--|++.|+.+ ....-|.. |.-+.+.|+.+ .-+.|-+|..|.-||.+- +........
T Consensus 348 il~~~~~~~~l~klDIE~GKIV---eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV---EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceee---eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 4455666677777888866655 33333333 77788888754 234566788999999873 221111111
Q ss_pred ecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 244 GLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
++.-.......|.+-..+|.+|.|+.+|.|++||--.-+....+++-..+|..+..+.||++|++.+ +..+.+.++
T Consensus 424 ---~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 ---SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ---ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 1111234456677778899999999999999999843333455778889999999999999888764 446666665
Q ss_pred ec
Q 003467 324 SC 325 (817)
Q Consensus 324 ~~ 325 (817)
.-
T Consensus 500 ~~ 501 (644)
T KOG2395|consen 500 LI 501 (644)
T ss_pred ec
Confidence 43
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.99 E-value=1.7 Score=42.10 Aligned_cols=233 Identities=18% Similarity=0.218 Sum_probs=134.4
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCC----CCCCcEEEEEEcCC----CCCcEEEEEEeecCCCC------CCCceE
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSP----GTSGWHCQLTVHGD----PKSRISSLVWCHAGKMG------LPGGRL 81 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~----~~~~~~~~~~~~g~----~~~~V~~l~~s~~~~~~------~~~~~l 81 (817)
-..|+|+|.+.+-++....+...+||... +.. ..++.++++. .....+.+.|.....+. ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35699999998777777778999999871 111 1245566632 23578899998654431 123567
Q ss_pred EEeeCCCeEEEEECCCCeE-----EEEEe-ecCceEE-EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 82 FSSSIDGSVSEWDLYDLKQ-----KIVLQ-SIDFSIW-QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~i~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
+.+++||+|.-|...-+.. ...++ +..+.|+ -+++...+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~-------------------------------- 151 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGG-------------------------------- 151 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCC--------------------------------
Confidence 8889999999999543222 11222 1123332 3444433210
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc-------cceE------EEEEE---ccCCCEE
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV-------SGRV------LSVTW---SADGNML 218 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v------~~v~~---s~dg~~l 218 (817)
..+.++--..++|.+||-. -..+.....+... .-.| .-|.| .++++.=
T Consensus 152 ---------------~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~ 215 (336)
T TIGR03118 152 ---------------DYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDE 215 (336)
T ss_pred ---------------ceEEEeccCCCceEEecCc-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccccc
Confidence 0144445567888888764 1111100001100 0001 11122 2333333
Q ss_pred EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC------C-eEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 219 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC------G-TLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 219 ~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~------~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
+.|..-|.|-++|. .|+.++++... +.-..-|.|+..|- + .|+---.||+|..+|..+|+.+..+.
T Consensus 216 v~G~G~G~VdvFd~-~G~l~~r~as~------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 216 VAGAGLGYVNVFTL-NGQLLRRVASS------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred ccCCCcceEEEEcC-CCcEEEEeccC------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 34444579999997 69999998632 45566788887653 3 45555569999999999999887776
Q ss_pred cCcc------CeeEEEEec
Q 003467 292 FHKG------DVNALAAAP 304 (817)
Q Consensus 292 ~h~~------~v~~l~~s~ 304 (817)
...+ ....|+|-.
T Consensus 289 ~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 289 DPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEecCeEEeeeCC
Confidence 5433 355677754
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.93 E-value=0.03 Score=50.87 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCCEEEEEecCCcEEEEEcc-CCceeeeeccCcccccccCCCCCCcee-EEEEccCCCEEEEEeCCCcEEEEECCCcceE
Q 003467 551 DSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 628 (817)
Q Consensus 551 d~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 628 (817)
-+..|++|+.+|.|++|... .+.....+.. -...|. -+.-..++.+..++..||.|+.|++.-.+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-----------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-----------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-----------ccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 35678899999999999875 2222222221 122232 2333446668899999999999999888765
Q ss_pred EEEecCCC-CCeEEEEecCCCCCeEEEE--ecCCeEEEEEcC
Q 003467 629 WFISRLEG-ASVTAAGFPPQNNNVLIIT--TSSNQVYVFDVE 667 (817)
Q Consensus 629 ~~~~~~~~-~~i~~l~~sp~d~~~l~~~--~~d~~i~vwd~~ 667 (817)
... ..|. .++..+..+. .+..|+++ +.|..++.|+++
T Consensus 138 g~~-g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 138 GYV-GQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eee-ccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 544 2333 3333333333 33344444 444444444443
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.89 E-value=1.5 Score=48.52 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=73.3
Q ss_pred CEEEEEeCCCc-----EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC------cEEEEECCCCceEE
Q 003467 171 RRVALACDDGC-----VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG------YIRSWDAKLGYEIY 239 (817)
Q Consensus 171 ~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg------~i~vwd~~~g~~~~ 239 (817)
...|+|+.||. |..||..+.+ ......+.......-.+. -+|...++|+.++ ++..||..++.-..
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCc-ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 58888888864 6667776443 222222222122222222 2577777887553 57788887766443
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCc-----EEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEEEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS-----VQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
.-.. .....-..++...+..++.|+.++. |..||..+.+.... ++.....+....+ ++...++|
T Consensus 459 ~~~M-------~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vG 529 (571)
T KOG4441|consen 459 IAPM-------NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVG 529 (571)
T ss_pred cCCc-------ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEe
Confidence 3322 1112222355555557888887763 77788887654332 3323333333333 46666777
Q ss_pred ccCCc
Q 003467 313 GSDGQ 317 (817)
Q Consensus 313 ~~dg~ 317 (817)
|.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 77764
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.51 Score=42.44 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=118.5
Q ss_pred CCceEEEEeecCCCCCceEEEeeecCC--cccc-ceeEEEEecCCCEEE-EEecCCcEEEEEccCCceeeeeccCccccc
Q 003467 511 HVKPSLFELKKGKVGQGEWIINKRQLP--RKLQ-FAHSMIFSYDSSQLI-IAGHDRRIYVVDVSSSELLHTFTPCREEHD 586 (817)
Q Consensus 511 ~~~i~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~i~~~~fspd~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 586 (817)
...|++|++.. +..+|. ..+. ...+ .++ .-|.++. ..-.+|.-.++|..+.+.+..+.
T Consensus 67 ~S~ir~~~L~~---gq~~~s---~~l~~~~~FgEGit-----~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~------- 128 (262)
T COG3823 67 FSKIRVSDLTT---GQEIFS---EKLAPDTVFGEGIT-----KLGDYFYQLTWKEGVAFKYDADTLEELGRFS------- 128 (262)
T ss_pred cceeEEEeccC---ceEEEE---eecCCcccccccee-----eccceEEEEEeccceeEEEChHHhhhhcccc-------
Confidence 46788888875 444433 2222 1111 121 1233333 33458889999999988888877
Q ss_pred ccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEec-CCC---CCeEEEEecCCCCCeEEEEecCCeEE
Q 003467 587 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR-LEG---ASVTAAGFPPQNNNVLIITTSSNQVY 662 (817)
Q Consensus 587 ~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~-~~~---~~i~~l~~sp~d~~~l~~~~~d~~i~ 662 (817)
.++.=+.++ .|++-|..++...+++.-|.++......+.. ..+ ..++.+.|- +|...|-.=.+..|.
T Consensus 129 -----y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~ 199 (262)
T COG3823 129 -----YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIA 199 (262)
T ss_pred -----cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceE
Confidence 455666666 4777888888777888888776554333221 122 445667787 687888777788888
Q ss_pred EEEcCCCccccchhcccC-ccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEc
Q 003467 663 VFDVEAKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 720 (817)
Q Consensus 663 vwd~~~~~~~~ws~~~~~-~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~ 720 (817)
..+.++|+...|..-... .....-..+..-..+|++.|+ .+++++.|..|--++.+
T Consensus 200 rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~--~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ--QDRFLITGKLWPLLFEV 256 (262)
T ss_pred EEcCCCCcEEEEEEccCCchhcCccccccccccceeecCc--CCeEEEecCcCceeEEE
Confidence 889999998888765443 222223334566799999996 67899999888666654
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.74 E-value=1.3 Score=40.80 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred EEEecCCCcEEEE--EcCCceEEEEeecCCC----CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEc
Q 003467 496 CSTISNSGMLFAY--SDHVKPSLFELKKGKV----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 569 (817)
Q Consensus 496 ~~~~s~~g~~la~--~~~~~i~l~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~ 569 (817)
.++|+.|.+.+.+ +.+.+|.-|+.+...+ ...++++++.+...+. ..-.++...+|.+.++.-..++|..+|.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEECC
Confidence 5678878776666 4557777788554211 1234444442211111 2334555668888888888999999999
Q ss_pred cCCceeeeeccCcccccccCCCCCCceeEEEEc
Q 003467 570 SSSELLHTFTPCREEHDREIQPSEPPITKMFTS 602 (817)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 602 (817)
.+|+.+.++.- -...|+++||-
T Consensus 241 ~tGK~L~eikl-----------Pt~qitsccFg 262 (310)
T KOG4499|consen 241 TTGKILLEIKL-----------PTPQITSCCFG 262 (310)
T ss_pred CCCcEEEEEEc-----------CCCceEEEEec
Confidence 99999999987 47789999994
No 413
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.66 E-value=2.9 Score=43.96 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=51.2
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
....|.++.+..+|.+-.|+.+| +..||..+++.++.-.... ..|..+..+-.|+ |.+|+.+| |.+.+..+
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhh
Confidence 55678888888889999999888 6777888888777665544 5677777766665 66776665 66665544
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.64 E-value=0.84 Score=46.70 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=89.1
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
...+.++++.|++.+++++.. |.+.. ....+...|... .......+.++++.++++. +..+..|.+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~-s~~~gg~tW~~~---~~~~~~~l~~i~~~~~g~~-------~~vg~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYS-TWEPGQTAWTPH---QRNSSRRLQSMGFQPDGNL-------WMLARGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEE-EcCCCCCeEEEe---eCCCcccceeeeEcCCCCE-------EEEecCCEEEE
Confidence 467899999999988877654 64432 222332234332 2333678999999999874 44556676643
Q ss_pred EECCCCeEEEEEee----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 93 WDLYDLKQKIVLQS----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 93 wd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
=..+.|..=..... ....+..+++.+++
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~------------------------------------------------ 271 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPG------------------------------------------------ 271 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcCCC------------------------------------------------
Confidence 22334332221111 12346777787766
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
.+.+++.+|.|. .....++..........-......+.|..+++.+++ +..|.|..|+-
T Consensus 272 ---~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 272 ---EIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred ---CEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 455566677655 344444554322211222346788888877666554 55678877763
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.55 E-value=0.49 Score=49.66 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCccccceeEEEEecC----CCEEEEEecCCcEEEEEcc-----CCceeeeeccCcccccccCCCCCCceeEEEEccCCC
Q 003467 536 LPRKLQFAHSMIFSYD----SSQLIIAGHDRRIYVVDVS-----SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 606 (817)
Q Consensus 536 ~~~~~~~i~~~~fspd----~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 606 (817)
..+.+..|..+.|.|- ...|.+.-....|.||.+. +++.+..-... ..+. ..--...+.|+|...
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~---~pvLpQGCVWHPk~~ 125 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE---IREP---FPVLPQGCVWHPKKA 125 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeee---ccCC---cccCCCcccccCCCc
Confidence 4455668999999884 4355556677889999984 23333222210 0000 111223467999999
Q ss_pred EEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecC-CeEEEEEcCCCcc
Q 003467 607 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS-NQVYVFDVEAKQL 671 (817)
Q Consensus 607 ~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d-~~i~vwd~~~~~~ 671 (817)
.|++-.....-.++++.....+........+.|.+.+|.+ ||++|+++-.. =.-++||-..+.+
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhh
Confidence 9888766654456666544333333222346899999999 99888887443 3778999877765
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.40 E-value=3.8 Score=42.11 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=70.9
Q ss_pred CEEEEEe-CCCcEEEEEec-CCCceeEeeccCC---cc----ceEEEEEEccCCCEEEEeeC------CCcEEEEECCCC
Q 003467 171 RRVALAC-DDGCVRIYRIT-DSDELIYHRSLPR---VS----GRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLG 235 (817)
Q Consensus 171 ~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~---h~----~~v~~v~~s~dg~~l~s~~~------dg~i~vwd~~~g 235 (817)
++|+..+ ..+.|+|+|+. ........+.+.. +. ..-..+-.-|+|+.++++-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 4666665 78999999998 3344444454443 11 12233444578988887532 256888888777
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc--------------------CCCcEEEEeCCCCeEEEEeecCc
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD--------------------STGSVQFWDSRHGTLLQAHSFHK 294 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~--------------------~dg~i~iwd~~~~~~~~~~~~h~ 294 (817)
+...+...+. +....-+.+.+.|.. .++|.. ...++.+||+.+.+.++++....
T Consensus 168 ~v~g~We~~~-----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 168 EVKGRWEKDR-----GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cccceeccCC-----CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 7766665321 223344556666654 455542 34569999999999999987543
Q ss_pred --cCeeEEEEec--CCCEEEEEcc-CCcEEEEEe
Q 003467 295 --GDVNALAAAP--SHNRVFSTGS-DGQVILYKA 323 (817)
Q Consensus 295 --~~v~~l~~s~--~~~~l~~~~~-dg~i~iw~~ 323 (817)
...+.+.|.. +..+=+++.. ..+|..|--
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 3466677754 4555555544 444544433
No 417
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.32 E-value=5.7 Score=43.66 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=51.0
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCce-EEEEEeecCCCCCCC-ceeEEEeEEecCC--eEEEEcCCCc--EEEEeCCCCe
Q 003467 212 SADGNMLYSGSSDGYIRSWDAKLGYE-IYRITVGLGGLGSGP-ELCIWSLLSLRCG--TLVSADSTGS--VQFWDSRHGT 285 (817)
Q Consensus 212 s~dg~~l~s~~~dg~i~vwd~~~g~~-~~~~~~~~~~~~~~~-~~~v~~v~~~~~~--~l~s~~~dg~--i~iwd~~~~~ 285 (817)
..++..++.+..+|.+..-.+..... +..... +. .....++.+..+| .++.|+.-|. +.-|....-+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-------g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~ 291 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-------GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLE 291 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-------EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-------CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcE
Confidence 55678899999999999887765432 111111 12 4556778888999 8888877555 4445544455
Q ss_pred EEEEeecCccCeeEEEEe
Q 003467 286 LLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s 303 (817)
.+.++.. -++|..+++.
T Consensus 292 ~~~~~~N-~~Pi~D~~v~ 308 (504)
T PF10433_consen 292 VLDSLPN-WGPIVDFCVV 308 (504)
T ss_dssp EEEEE-----SEEEEEEE
T ss_pred EEEeccC-cCCccceEEe
Confidence 5666653 4677777775
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.26 E-value=0.98 Score=49.33 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEE--ccCCCEEEEEeCCCcEEE
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWLAAVNCFGDVYI 619 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s~dg~~la~~~~dg~i~v 619 (817)
.+.-+.-|.-++.-++-+....+.|||...+.+...-.- ...+.|.++.| .|||+.+.+.+....|.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----------cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 455555555455444444456899999987764432221 04788999988 569999999999999999
Q ss_pred EECC------Cc---ceEEE--EecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 620 FNLE------IQ---RQHWF--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 620 wd~~------~~---~~~~~--~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
|.-. .+ ..... +......+|.+..|.+ +|. |++|+ +++++|++-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~-LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGT-LVVGS-GNQLFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCe-EEEEe-CCEEEEECC
Confidence 8531 11 11111 2222235899999998 774 54544 677999874
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.25 E-value=0.88 Score=47.90 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=79.2
Q ss_pred CCeEEEEecCCC-----cEEEEEcCCceEEEEeecCCCCCceEEEe-eecCCcccc-ceeEEEEecCCCEEEEEecCCcE
Q 003467 492 RKIICSTISNSG-----MLFAYSDHVKPSLFELKKGKVGQGEWIIN-KRQLPRKLQ-FAHSMIFSYDSSQLIIAGHDRRI 564 (817)
Q Consensus 492 ~~i~~~~~s~~g-----~~la~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~i~~~~fspd~~~l~~~~~dg~i 564 (817)
+.+..++|+|-+ .+||+.....|.+|.+.....+...|-+. .-++....+ -.....|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 668889999864 58999999999999998532222222222 112211111 12356799999999988876655
Q ss_pred EEEEcc--CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC-cEEEEEC
Q 003467 565 YVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-DVYIFNL 622 (817)
Q Consensus 565 ~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg-~i~vwd~ 622 (817)
.++++. +.+....+. ..+.|.|.||.+||+.|+++-... .-+|||-
T Consensus 137 V~~sV~~d~srVkaDi~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEecc------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 566653 445555565 478999999999999988775432 3567775
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.24 E-value=7 Score=44.24 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCeEEEEecCCCcEEEEEcCCceEEEEeecC-------CCCCceEEEee-----ecC-CccccceeEEEEecC---CCEE
Q 003467 492 RKIICSTISNSGMLFAYSDHVKPSLFELKKG-------KVGQGEWIINK-----RQL-PRKLQFAHSMIFSYD---SSQL 555 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~-------~~~~~~~~~~~-----~~~-~~~~~~i~~~~fspd---~~~l 555 (817)
..|..+.++++|+++|......+.+-.+... +++......+. .-+ ......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5688999999999999987788888777541 01111111111 111 122337889999996 5899
Q ss_pred EEEecCCcEEEEEccCC
Q 003467 556 IIAGHDRRIYVVDVSSS 572 (817)
Q Consensus 556 ~~~~~dg~i~v~d~~~~ 572 (817)
++-+.|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999643
No 421
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=3 Score=39.93 Aligned_cols=156 Identities=13% Similarity=-0.026 Sum_probs=90.3
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeE---EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
....+..+.++.+- ...++.+.-++|.|+.+-.. +..+.. .+--.++.. .|++.+++..|.-+.+.|+.+.+.
T Consensus 85 ~~~l~~Dv~vse~y-vyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVSEEY-VYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEecccE-EEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 44556667776554 33445556699999986432 222322 133344444 488999988677788889877652
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 408 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 408 (817)
.. +.........+-..++++ +++-..+..|+
T Consensus 161 P~--------------lagrya~~~~d~~~v~IS-----------------------------------Gn~AYvA~~d~ 191 (370)
T COG5276 161 PQ--------------LAGRYALPGGDTHDVAIS-----------------------------------GNYAYVAWRDG 191 (370)
T ss_pred ce--------------eeeeeccCCCCceeEEEe-----------------------------------cCeEEEEEeCC
Confidence 11 233333333333444543 23666677888
Q ss_pred eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEeccc
Q 003467 409 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE 465 (817)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~ 465 (817)
-+.+-|+.......-. ........+.++..+++..+++.....+-+-+....
T Consensus 192 GL~ivDVSnp~sPvli-----~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ 243 (370)
T COG5276 192 GLTIVDVSNPHSPVLI-----GSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGP 243 (370)
T ss_pred CeEEEEccCCCCCeEE-----EEEecCCceEEEEecCCeeEEEEcccceEEEecCCC
Confidence 8889888763321100 000011145677788888888888777776665543
No 422
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.18 E-value=0.38 Score=51.96 Aligned_cols=117 Identities=11% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCCceeEEEEccCCCEEEEEeCCC-----cEEEEECCCcceEEE-EecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEE
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFG-----DVYIFNLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg-----~i~vwd~~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
..+.-..+.|-|.|..+|+-..|| .|..+.-++.++-.. +.......+..++|.- ....|+++ ..+.|++|-
T Consensus 245 ~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 245 VTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWT 322 (1243)
T ss_pred cccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEE
Confidence 334445689999999999988665 355665544332111 2222224566778876 55666655 456799997
Q ss_pred cCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 666 VEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 666 ~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
..+-. |.-+... .-..+.-+.|.|. ....+++.+...+-.++++.
T Consensus 323 tkNyh---WYLK~e~--------~ip~~s~vkwhpe-~~nTl~f~d~~~I~~V~f~~ 367 (1243)
T COG5290 323 TKNYH---WYLKVER--------QIPGISYVKWHPE-EKNTLLFRDGERILRVFFSE 367 (1243)
T ss_pred ccceE---EEEEEee--------cCCCcceeeeccc-cCcEEEEecCCeEEEEEeeh
Confidence 65542 3211111 1124667899997 56888888999999988865
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.04 E-value=1.2 Score=46.42 Aligned_cols=142 Identities=10% Similarity=0.142 Sum_probs=78.0
Q ss_pred cceeEEEEecCCCEEEEEe-----------cCC-cEEEEEccC--Cce--eeeeccCcccccccCCCCCCceeEEEEccC
Q 003467 541 QFAHSMIFSYDSSQLIIAG-----------HDR-RIYVVDVSS--SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSD 604 (817)
Q Consensus 541 ~~i~~~~fspd~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 604 (817)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+. ...|.. .....+.+++.++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----------~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----------ELSMVTGLAVAVG 82 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----------CCCCccceeEecC
Confidence 3577899999999887753 223 677776532 322 233332 2345688999999
Q ss_pred CCEEEEEeCCCcEEEE-ECCCc-----ceEEEEecCC------CCCeEEEEecCCCCCeEEEEecC--------------
Q 003467 605 GQWLAAVNCFGDVYIF-NLEIQ-----RQHWFISRLE------GASVTAAGFPPQNNNVLIITTSS-------------- 658 (817)
Q Consensus 605 g~~la~~~~dg~i~vw-d~~~~-----~~~~~~~~~~------~~~i~~l~~sp~d~~~l~~~~~d-------------- 658 (817)
| +++ ++... |..| +.+.. +....+.... ...+..++|.| |+.+.++.+..
T Consensus 83 G-lyV-~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 83 G-VYV-ATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred C-EEE-eCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCc
Confidence 8 444 44443 4444 44321 2221222111 13477899999 88766655521
Q ss_pred -----CeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcC
Q 003467 659 -----NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA 712 (817)
Q Consensus 659 -----~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~ 712 (817)
+.|.-++.+++++. .+..--....+++|+|+|+ +++...
T Consensus 159 ~~~~~g~i~r~~pdg~~~e------------~~a~G~rnp~Gl~~d~~G~---l~~tdn 202 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLR------------VVAHGFQNPYGHSVDSWGD---VFFCDN 202 (367)
T ss_pred ccccCceEEEEecCCCeEE------------EEecCcCCCccceECCCCC---EEEEcc
Confidence 34555555555431 1211123357899999754 555443
No 424
>PHA03098 kelch-like protein; Provisional
Probab=95.00 E-value=1.2 Score=49.48 Aligned_cols=144 Identities=8% Similarity=-0.011 Sum_probs=66.7
Q ss_pred CEEEEEeCC-----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC------CcEEEEECCCCceEE
Q 003467 171 RRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYEIY 239 (817)
Q Consensus 171 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~g~~~~ 239 (817)
...+.|+.+ ..+..||..++. ......+....... +++ .-+++..+.|+.+ ..+..||..+++-..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 466666654 346778876443 22212222111111 122 2356777777632 358889987665332
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC--------CcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCGTLVSADST--------GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRV 309 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l 309 (817)
.-..+ . .. .-.++....+..++.|+.+ ..+.+||..+++-... +.........+. -+++.+
T Consensus 421 ~~~~p--~---~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iy 491 (534)
T PHA03098 421 GSPLP--I---SH--YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIY 491 (534)
T ss_pred cCCCC--c---cc--cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEE
Confidence 11110 0 11 1112223333345666542 2388899887654322 111111112222 256666
Q ss_pred EEEccC-----CcEEEEEeecc
Q 003467 310 FSTGSD-----GQVILYKASCE 326 (817)
Q Consensus 310 ~~~~~d-----g~i~iw~~~~~ 326 (817)
+.||.+ ..+.+||..+.
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCC
Confidence 666654 35677776553
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.64 Score=46.97 Aligned_cols=141 Identities=9% Similarity=0.070 Sum_probs=87.1
Q ss_pred EEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCcee
Q 003467 496 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL 575 (817)
Q Consensus 496 ~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~ 575 (817)
.+-|....+.+.+...+.+.=|.....++...+ .... ...++|.++.||+|.+.||+--.+.+|.+++....+..
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpi----Sfdm-~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI----SFDM-DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCc----eeee-cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 344544445555555555555665543333221 1112 23348999999999999999999999999998432221
Q ss_pred ----eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCe
Q 003467 576 ----HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 651 (817)
Q Consensus 576 ----~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 651 (817)
++-+. ....|...+|+.+ .-+|.....| +.+|-....+....+-..+...|.-..|.+ +.+.
T Consensus 102 l~~~~~ck~-----------k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v 167 (657)
T KOG2377|consen 102 LEYTQECKT-----------KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAV 167 (657)
T ss_pred hHHHHHhcc-----------CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccce
Confidence 22222 3456889999766 6777777666 888877655433233333456788888888 6554
Q ss_pred EEEE
Q 003467 652 LIIT 655 (817)
Q Consensus 652 l~~~ 655 (817)
+..+
T Consensus 168 ~LL~ 171 (657)
T KOG2377|consen 168 ILLS 171 (657)
T ss_pred Eeee
Confidence 4333
No 426
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.91 E-value=0.091 Score=33.73 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=27.0
Q ss_pred CceEEEEECCCC---CeEEEEecCCcEEEEecCC
Q 003467 14 SPVVALATSADD---SQVAAAREDGSLEIWLVSP 44 (817)
Q Consensus 14 ~~I~~la~spdg---~~la~~~~dg~i~iwd~~~ 44 (817)
++|+++.|||+. .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 479999999854 5999999999999999985
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.88 E-value=1.3 Score=48.93 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=93.3
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEE--EEEE----------cC-C----CCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHC--QLTV----------HG-D----PKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~--~~~~----------~g-~----~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
+.+|.+|. .+.|.||++..-...... ...+ .+ . ....|..|....-|.. ..|+.+.+|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~----EVLl~c~Dd 123 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE----EVLLLCTDD 123 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe----eEEEEEecC
Confidence 77888876 478999998743321100 0000 00 0 1124555554443433 679999999
Q ss_pred CeEEEEECCC-------C----e---------EEEEEeecCceEEEEeee--cCCCccceeeccCccccCccccCCCCCC
Q 003467 88 GSVSEWDLYD-------L----K---------QKIVLQSIDFSIWQMAVA--PSNSSLMHAVTNSDHIGNGYLNDKSNDS 145 (817)
Q Consensus 88 ~~i~vwd~~~-------~----~---------~~~~~~~~~~~i~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (817)
|.|.+|.+++ . + +...+. .+..+|.++++ ...
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~------------------------- 177 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS------------------------- 177 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-------------------------
Confidence 9999997632 1 0 111222 34678888887 333
Q ss_pred CCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC---C---EEE
Q 003467 146 DDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG---N---MLY 219 (817)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg---~---~l~ 219 (817)
+++|+++....|.||-......-.....-..|...|-+|+|-++. . .|+
T Consensus 178 -------------------------rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~ 232 (717)
T PF08728_consen 178 -------------------------RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVV 232 (717)
T ss_pred -------------------------eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEE
Confidence 488888888999998776321111111112366789999997654 2 788
Q ss_pred EeeCCCcEEEEEC
Q 003467 220 SGSSDGYIRSWDA 232 (817)
Q Consensus 220 s~~~dg~i~vwd~ 232 (817)
+++-.|.+.+|++
T Consensus 233 a~dI~G~v~~~~I 245 (717)
T PF08728_consen 233 ATDISGEVWTFKI 245 (717)
T ss_pred EEeccCcEEEEEE
Confidence 8889999999887
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.77 E-value=3.2 Score=43.27 Aligned_cols=148 Identities=17% Similarity=0.241 Sum_probs=87.9
Q ss_pred eEEEEECCCCCeEEEEecCCcEE-EEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEE
Q 003467 16 VVALATSADDSQVAAAREDGSLE-IWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWD 94 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~-iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd 94 (817)
...+..++||.+++++.. |.+. -|| .+..-|... . ......++++.|.+++. ++.++.+|.+ +|.
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~-~--~~~~~~l~~v~~~~dg~-------l~l~g~~G~l-~~S 306 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPH-N--RASARRIQNMGWRADGG-------LWLLTRGGGL-YVS 306 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEe-c--CCCccceeeeeEcCCCC-------EEEEeCCceE-EEe
Confidence 455678899998888765 5433 244 233212222 2 22256799999999887 4555566654 444
Q ss_pred CCCCeE-----EEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 95 LYDLKQ-----KIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 95 ~~~~~~-----~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
...|+. ...... ....+..+.|.+++
T Consensus 307 ~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~----------------------------------------------- 339 (398)
T PLN00033 307 KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK----------------------------------------------- 339 (398)
T ss_pred cCCCCcccccceeecccCCCCcceEEEEEcCCC-----------------------------------------------
Confidence 445431 222221 12347788888776
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEE
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 230 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 230 (817)
.+++++..|.+.... ..++.......-.+-......+.|.++++.+++| .+|.|..|
T Consensus 340 ----~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 340 ----EAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ----cEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 677777888777664 3355543322233445678899998776665554 56776655
No 429
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.72 E-value=4.5 Score=46.85 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=102.8
Q ss_pred ccceeEEEEe---c----CCCEEEEEecCCcEEEEEccCC---------------ceeeeeccCcccccccCCCCCCcee
Q 003467 540 LQFAHSMIFS---Y----DSSQLIIAGHDRRIYVVDVSSS---------------ELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 540 ~~~i~~~~fs---p----d~~~l~~~~~dg~i~v~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
..+|..|+|. . ..++|++- ....+.|+...-. .++.++.... ....+..
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~--------tgg~~~a 149 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD--------TGGFPHA 149 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhh--------cCCCccc
Confidence 3488999997 2 22455554 4556888873211 1222222110 1244677
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCc----ceEEEEecCCC----------CCeEEEEecCCCCCeEEEEecCCeEE
Q 003467 598 KMFTSS-DGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRLEG----------ASVTAAGFPPQNNNVLIITTSSNQVY 662 (817)
Q Consensus 598 ~l~~s~-dg~~la~~~~dg~i~vwd~~~~----~~~~~~~~~~~----------~~i~~l~~sp~d~~~l~~~~~d~~i~ 662 (817)
.++|+| +.+.||+.+..|+-.||++... ...+.+..... +.-..+.|.+ +.+.|++++.. .+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~-~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRS-KLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCC-ceE
Confidence 899998 5569999999999999999211 11111111111 2233788988 87888887654 589
Q ss_pred EEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 663 VFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 663 vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
++|+++....+ .-........|..+.=+|+ ++..+++..+..+..+|...
T Consensus 228 ~~d~~~~~~~~---------~l~~~~~~~~IlDv~~~~~-~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 228 LIDFESNWQTE---------YLVTAKTWSWILDVKRSPD-NPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEECCCCCccc---------hhccCCChhheeeEEecCC-ccceEEEEecCeEEEEEccC
Confidence 99999886422 0112233467999999997 56788888999999999877
No 430
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.70 E-value=8.3 Score=42.35 Aligned_cols=224 Identities=15% Similarity=0.158 Sum_probs=113.9
Q ss_pred CccceeeeeeecCCCCeEEEEecCC---CcEEEEE-cC-CceEEEEeecC----------CCCCceEEEeeecCCccccc
Q 003467 478 ASTSLLVQVKSKASRKIICSTISNS---GMLFAYS-DH-VKPSLFELKKG----------KVGQGEWIINKRQLPRKLQF 542 (817)
Q Consensus 478 ~~~~~~~~~~~~~~~~i~~~~~s~~---g~~la~~-~~-~~i~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 542 (817)
.+|+++.....+....|.|+..-.. .+..++| ++ .+-++-.+... ......+. ..+ ...
T Consensus 58 PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~---~kl---~~k 131 (670)
T PF10395_consen 58 PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFE---LKL---DDK 131 (670)
T ss_pred CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEE---EEc---ccc
Confidence 3456666666666667777765432 2344444 33 33454444442 00111111 112 236
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEEccCCcee--eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-CC---c
Q 003467 543 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG---D 616 (817)
Q Consensus 543 i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-dg---~ 616 (817)
+-.+.|.++++.+++...+|.|.+||...+... ..+..... .-..+..-|..........++.+.+. .+ .
T Consensus 132 vv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~----~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 132 VVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS----INVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred eEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc----cceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 889999999999999999999999999433221 12221100 00001122222221122345555544 32 4
Q ss_pred EEEEEC--CCcceEEEEe--cCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCc
Q 003467 617 VYIFNL--EIQRQHWFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 692 (817)
Q Consensus 617 i~vwd~--~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~ 692 (817)
.+++.+ ++... ..+. ..+........|.-.+|.+... .+++|.+|++..-++. ....++..+..-.
T Consensus 208 ykL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~-----~tI~l~~ii~~~~-- 277 (670)
T PF10395_consen 208 YKLISLSNESSSI-FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQ-----KTISLPSIIDKES-- 277 (670)
T ss_pred EEEEEeccCCcce-EEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEE-----EEEEechhhcccc--
Confidence 667777 22222 2221 1122233334444435544333 6778999988766541 1112232222221
Q ss_pred eeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 693 VIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 693 v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
-.-++|.|- .++|+++...+.++.+|+.-
T Consensus 278 ~~~vSl~~~-s~nRvLLs~~nkIyLld~~~ 306 (670)
T PF10395_consen 278 DDLVSLKPP-SPNRVLLSVNNKIYLLDLKF 306 (670)
T ss_pred ccceEeecC-CCCeEEEEcCCEEEEEeehh
Confidence 233445442 47899999999999999854
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.69 E-value=0.85 Score=49.77 Aligned_cols=125 Identities=8% Similarity=0.040 Sum_probs=80.8
Q ss_pred CCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecC-CCCCeEEEEecCCeEEEEEcCC---
Q 003467 593 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP-QNNNVLIITTSSNQVYVFDVEA--- 668 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~l~~~~~d~~i~vwd~~~--- 668 (817)
-..++.+.-|.-++..++-+....+.|||...+.......-.....|.++.|.. .+++.+++.|-.+.|.+|.-..
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344555666665555555445557999999988755443222346899999875 2777788888889899986532
Q ss_pred -CccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCCC
Q 003467 669 -KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP 723 (817)
Q Consensus 669 -~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~~ 723 (817)
.....|..-....+ ..+.. .+|.+..|.++|. +++...+.++++|-..+
T Consensus 109 ~~~~p~w~~i~~i~i-~~~T~--h~Igds~Wl~~G~---LvV~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDI-SSHTP--HPIGDSIWLKDGT---LVVGSGNQLFVFDKWLD 158 (631)
T ss_pred hcCCcccceeEEEEe-ecCCC--CCccceeEecCCe---EEEEeCCEEEEECCCcC
Confidence 22223432222111 12233 4789999999865 78888888998886655
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.38 Score=54.33 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=93.1
Q ss_pred CCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEE-----EEEe------ecCceEEEEeeecCCCcccee
Q 003467 58 DPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQK-----IVLQ------SIDFSIWQMAVAPSNSSLMHA 126 (817)
Q Consensus 58 ~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~------~~~~~i~~~~~s~~~~~~~~~ 126 (817)
+..-.|..+...+|+.. ..++..+.+-.|..+|+.+-..- .-|. ....-..++.|+|.-.
T Consensus 98 ~k~~pi~~~v~~~D~t~----s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp----- 168 (1405)
T KOG3630|consen 98 EKEIPIVIFVCFHDATD----SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP----- 168 (1405)
T ss_pred eccccceEEEeccCCce----EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-----
Confidence 33456677777788766 23444445557899998653211 1111 1223445666666542
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceE
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV 206 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 206 (817)
-..|+...|+.|++..+...... ... ..-...+
T Consensus 169 --------------------------------------------~n~av~l~dlsl~V~~~~~~~~~--v~s-~p~t~~~ 201 (1405)
T KOG3630|consen 169 --------------------------------------------LNSAVDLSDLSLRVKSTKQLAQN--VTS-FPVTNSQ 201 (1405)
T ss_pred --------------------------------------------chhhhhccccchhhhhhhhhhhh--hcc-cCcccce
Confidence 15677778899998877522111 011 2345678
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC
Q 003467 207 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG 265 (817)
Q Consensus 207 ~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 265 (817)
+|++|+|.|+.++.|-..|++.-|-. +++...++... .......|.+|+|....
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~P----p~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEP----PVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeec-ccceeecccCC----CcCCCcceeEEEEecce
Confidence 99999999999999999999998875 45555555432 11235789999998776
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.62 E-value=1.6 Score=45.52 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCeEEEEecCCCcEEEEEc------------CC-ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 492 RKIICSTISNSGMLFAYSD------------HV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~------------~~-~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
.....+++.++|+++++.. .+ .|.+++-.. ..+... +...+.......+.+++.++| |+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d---~~~vfa~~l~~p~Gi~~~~~G--lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYD---KSNVFAEELSMVTGLAVAVGG--VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcc---eeEEeecCCCCccceeEecCC--EEEe
Confidence 5577889999999887742 11 444443222 112110 001122223356889999998 4444
Q ss_pred ecCCcEEEE-EccC-C----ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC------------------
Q 003467 559 GHDRRIYVV-DVSS-S----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF------------------ 614 (817)
Q Consensus 559 ~~dg~i~v~-d~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d------------------ 614 (817)
... .|..+ |... + +....+.+... ....+......++|.|||.+.++.+..
T Consensus 88 ~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~----~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 88 TPP-DILFLRDKDGDDKADGEREVLLSGFGG----QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred CCC-eEEEEeCCCCCCCCCCccEEEEEccCC----CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence 444 35544 4421 1 11111111000 000023457789999999866654421
Q ss_pred -CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe
Q 003467 615 -GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 656 (817)
Q Consensus 615 -g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~ 656 (817)
|.|.-++.++++... +.... .....++|+| +++++++-.
T Consensus 163 ~g~i~r~~pdg~~~e~-~a~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRV-VAHGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred CceEEEEecCCCeEEE-EecCc-CCCccceECC-CCCEEEEcc
Confidence 456666666655432 22222 3567899999 888766544
No 434
>PHA03098 kelch-like protein; Provisional
Probab=94.60 E-value=1.5 Score=48.58 Aligned_cols=108 Identities=7% Similarity=-0.074 Sum_probs=51.7
Q ss_pred cCCEEEEEeCCC------cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-----CcEEEEECCCCce
Q 003467 169 EDRRVALACDDG------CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAKLGYE 237 (817)
Q Consensus 169 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~g~~ 237 (817)
++..++.|+.++ .+..||..+.... ....+.........+. -+++..+.|+.+ ..+..||..+++-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 344666666432 5677887654332 1122221111222222 256777777765 3577888776653
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC------CcEEEEeCCCCeE
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRHGTL 286 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d------g~i~iwd~~~~~~ 286 (817)
...-.. .....-.+++...+..++.|+.+ ..+..||..+++-
T Consensus 371 ~~~~~l-------p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 371 REEPPL-------IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eeCCCc-------CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 321111 01111112223333355666532 3578899887654
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.25 E-value=0.025 Score=61.35 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=107.2
Q ss_pred eccCCCceEEEEECC-CCCeEEEEecCCcEEEEecC--CCCCCcEEEEEEcCCCCCcEEEEEEee---cCCCCCCCceEE
Q 003467 9 IDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVS--PGTSGWHCQLTVHGDPKSRISSLVWCH---AGKMGLPGGRLF 82 (817)
Q Consensus 9 ~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~g~~~~~V~~l~~s~---~~~~~~~~~~l~ 82 (817)
+.+-++.|-.++|-. +-..++ ..-|...||++. .|+....++.+........+.-+.|.| +.-+ +.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~------ic 199 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY------IC 199 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce------ee
Confidence 356678888888843 222222 344778999887 454433344444444344555566655 3333 55
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
.+-.+++|++-++++... ..+.+|+.++..++|-..|-..
T Consensus 200 ~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~--------------------------------------- 239 (1283)
T KOG1916|consen 200 YGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLK--------------------------------------- 239 (1283)
T ss_pred eccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhh---------------------------------------
Confidence 566678888887776443 3445699888888887776211
Q ss_pred cccccccCCEEEEEeCCCcEEEEEec-CC-CceeEeeccCCccc-eEEEEEEccCC---------CEEEEeeC-CCcEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRIT-DS-DELIYHRSLPRVSG-RVLSVTWSADG---------NMLYSGSS-DGYIRS 229 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~-~~-~~~~~~~~~~~h~~-~v~~v~~s~dg---------~~l~s~~~-dg~i~v 229 (817)
.....++|..+|.++.||.++.|-+. ++ .........+.|.+ +-.|.-++... .++++++. +..+++
T Consensus 240 l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~ 319 (1283)
T KOG1916|consen 240 LASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKF 319 (1283)
T ss_pred heeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeE
Confidence 11133555799999999999999876 22 12222244555653 33333344322 13444443 456888
Q ss_pred EECCCCceE
Q 003467 230 WDAKLGYEI 238 (817)
Q Consensus 230 wd~~~g~~~ 238 (817)
|.....+|+
T Consensus 320 w~~a~w~Cl 328 (1283)
T KOG1916|consen 320 WAEAPWQCL 328 (1283)
T ss_pred eeccchhhh
Confidence 887766666
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.13 E-value=1.4 Score=36.83 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=72.3
Q ss_pred EEecCCCEEEEEecCCcEEEEEccCC--------ceeeeeccCcccccccCCCCCCceeEEEEcc-----CCCEEEEEeC
Q 003467 547 IFSYDSSQLIIAGHDRRIYVVDVSSS--------ELLHTFTPCREEHDREIQPSEPPITKMFTSS-----DGQWLAAVNC 613 (817)
Q Consensus 547 ~fspd~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-----dg~~la~~~~ 613 (817)
.|......|++++..|.|.|++.... ..+..+. -...|++|+-.+ +...|+.|+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN------------in~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN------------INQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE------------CCCceEEEEEEecCCCCCcCEEEEecc
Confidence 45555667888899999999987532 2334444 467788887654 3446777765
Q ss_pred CCcEEEEECCCcceEEEEecCCCCCeEEEEecC--CCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 614 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP--QNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp--~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
. .+..||++.......-... ..|.++.+-. +...-|+..+.+..|.-||.+..+.
T Consensus 73 t-~llaYDV~~N~d~Fyke~~--DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 73 T-SLLAYDVENNSDLFYKEVP--DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred c-eEEEEEcccCchhhhhhCc--cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 4 5999999887755333222 3677766632 1234566667788888888887764
No 437
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.95 E-value=7.9 Score=39.96 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=99.3
Q ss_pred CCcEEEE-E-cCCceEEEEeecCCCCCceEEEeee-cCCc--cccceeEEEEecCCCEEEEEe--cC----CcEEEEEcc
Q 003467 502 SGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKR-QLPR--KLQFAHSMIFSYDSSQLIIAG--HD----RRIYVVDVS 570 (817)
Q Consensus 502 ~g~~la~-~-~~~~i~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~~~fspd~~~l~~~~--~d----g~i~v~d~~ 570 (817)
+.++|++ + ..++|+++++.+.....++.++-.. ++.. .......+---|+|+.++++- .+ |.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 3466776 4 5688889888864444444332221 1111 111233344457998888762 22 468888888
Q ss_pred CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC--------------------CCcEEEEECCCcceEEE
Q 003467 571 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--------------------FGDVYIFNLEIQRQHWF 630 (817)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~--------------------dg~i~vwd~~~~~~~~~ 630 (817)
+.+.+...+.... ...--..+.+.|..+.+++... ..++.+||+.+.+...+
T Consensus 166 tf~v~g~We~~~~--------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 TFEVKGRWEKDRG--------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp T--EEEE--SB-T--------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cccccceeccCCC--------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 8888777765221 2333456677787777777642 24799999999998888
Q ss_pred EecCCC-CCeEEEEecCC-CCCeEEEEec-CCeEEEEEcCCCccccchhcccCcc-------------CcchhcCCCcee
Q 003467 631 ISRLEG-ASVTAAGFPPQ-NNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHTFVL-------------PRRYQEFPGEVI 694 (817)
Q Consensus 631 ~~~~~~-~~i~~l~~sp~-d~~~l~~~~~-d~~i~vwd~~~~~~~~ws~~~~~~~-------------~~~~~~~~~~v~ 694 (817)
+..... ..+..+.|..+ +..+=++++. ..+|..|--. +-..|..+.-..+ .+.+...+.-|+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~--~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD--DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc--CCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 765543 34566777651 3344444433 2334433321 2234666533222 222333356789
Q ss_pred EEEECCCCCCCEEEEEcCceEEEEEcCCCCCCCC
Q 003467 695 GLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDD 728 (817)
Q Consensus 695 ~l~f~p~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 728 (817)
.|..|.|.+--.+-.|....+..+|++-|...+.
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 9999997432223345667789999999876544
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.68 E-value=16 Score=41.79 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=72.0
Q ss_pred EEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEE--EEECC
Q 003467 546 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY--IFNLE 623 (817)
Q Consensus 546 ~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~--vwd~~ 623 (817)
.+..|-..++.+| ....+++||+...++++..+.. .....|+.+.+ .+..+++|+..-.|. .|+-+
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k---------~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELK---------FIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhc---------cCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 3445655566554 4667999999877777665531 02456788887 677899988665555 45555
Q ss_pred CcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 624 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 624 ~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
..+.+...-..-...|+++.+- |-..+|.+..-|.+.+-.+...
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEECCCc
Confidence 5555433322222467777776 5667899988888888877543
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=2 Score=43.58 Aligned_cols=109 Identities=11% Similarity=0.201 Sum_probs=76.1
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
-..++|.++.||+|.+.||+-+.+.+|.+.+....+.......+.... ...|.+..|+.... +|-....| +
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-~~~IlGF~W~~s~e-------~A~i~~~G-~ 134 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-NANILGFCWTSSTE-------IAFITDQG-I 134 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-cceeEEEEEecCee-------EEEEecCC-e
Confidence 345799999999999999999999999999986544321122222322 45699999988743 67776666 6
Q ss_pred EEEECCC-CeEEEEEeecCceEEEEeeecCCCccceeec
Q 003467 91 SEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 91 ~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
-+|-... .+.++..+.|...|.-..|+++..-.+.++.
T Consensus 135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 6666543 3345666778888888888888755544443
No 440
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=14 Score=40.66 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=41.9
Q ss_pred CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 274 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
-.|+|++.. |+++.++....+.+-.+.|+.+.. |++...+|++++|++-...
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence 458888886 888888877677999999997765 6666799999999986654
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.50 E-value=3 Score=46.13 Aligned_cols=165 Identities=10% Similarity=0.126 Sum_probs=93.9
Q ss_pred CcEEEEEcCCceEEEEeecCCCCCc---eEEEeee----cCCc-------cccceeEEEEe--cCCCEEEEEecCCcEEE
Q 003467 503 GMLFAYSDHVKPSLFELKKGKVGQG---EWIINKR----QLPR-------KLQFAHSMIFS--YDSSQLIIAGHDRRIYV 566 (817)
Q Consensus 503 g~~la~~~~~~i~l~~~~~~~~~~~---~~~~~~~----~~~~-------~~~~i~~~~fs--pd~~~l~~~~~dg~i~v 566 (817)
+.++.++..+.|.+|+++....... .+.+... .... ....|+.|... -+...|+++..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6788888899999999875322111 0111000 0000 01134444433 25668889999999999
Q ss_pred EEccCC-ceeeee----cc--Cc-ccccccCCCCCCceeEEEEc--cCCCEEEEEeCCCcEEEEECCCcceEEEE--ecC
Q 003467 567 VDVSSS-ELLHTF----TP--CR-EEHDREIQPSEPPITKMFTS--SDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL 634 (817)
Q Consensus 567 ~d~~~~-~~~~~~----~~--~~-~~~~~~~~~~~~~i~~l~~s--~dg~~la~~~~dg~i~vwd~~~~~~~~~~--~~~ 634 (817)
|.+++- +.+... .. .+ .....-........+.+++. ...++||+++....|.||-.......... ...
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 987321 000000 00 00 00000000134578899998 78889999998888888865442211111 111
Q ss_pred CCCCeEEEEecCCC--CC---eEEEEecCCeEEEEEcC
Q 003467 635 EGASVTAAGFPPQN--NN---VLIITTSSNQVYVFDVE 667 (817)
Q Consensus 635 ~~~~i~~l~~sp~d--~~---~l~~~~~d~~i~vwd~~ 667 (817)
+...|-+++|-+.+ +. +|++++-.|.+.+|++.
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 33578999999822 22 78888999999998883
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=93.47 E-value=4.9 Score=43.71 Aligned_cols=108 Identities=7% Similarity=-0.012 Sum_probs=52.5
Q ss_pred cCCEEEEEeCCC-----cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC--CcEEEEECCCCceEEEE
Q 003467 169 EDRRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 169 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d--g~i~vwd~~~g~~~~~~ 241 (817)
++..+++|+.++ .+..||..++... ....+.........+ .-+|...+.|+.+ ..+..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~-~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWI-PIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEE-ECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 344667776543 4667777654322 222222211112222 2367777777754 35778887655432211
Q ss_pred EeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC---cEEEEeCCCCeEE
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLL 287 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg---~i~iwd~~~~~~~ 287 (817)
.. .....-.+++.. +| ..+.|+.++ .+..||.++.+-.
T Consensus 348 ~l-------~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 348 SL-------LKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CC-------CCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 10 111111122333 45 556666543 4778888766543
No 443
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.36 E-value=8.4 Score=37.52 Aligned_cols=220 Identities=14% Similarity=0.121 Sum_probs=116.7
Q ss_pred EEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC------CCeE-EEEEee-----cCceEEEEeeecCCCccceeeccC
Q 003467 63 ISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY------DLKQ-KIVLQS-----IDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 63 V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~------~~~~-~~~~~~-----~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
-..|+|+|.+.+ -++....+...+||.. .... +-++.. ..+..+-+.|+....+.+.....
T Consensus 25 ~WGia~~p~~~~------WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~- 97 (336)
T TIGR03118 25 AWGLSYRPGGPF------WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI- 97 (336)
T ss_pred cceeEecCCCCE------EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-
Confidence 468999999987 7777778999999986 1221 222221 12345666666554322211000
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce--eEeeccC-CccceE-
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL--IYHRSLP-RVSGRV- 206 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-~h~~~v- 206 (817)
.....++.+++||+|.-|...-+... .....+. +..+.|
T Consensus 98 -------------------------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavY 140 (336)
T TIGR03118 98 -------------------------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVY 140 (336)
T ss_pred -------------------------------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCccee
Confidence 00126788999999999986422220 0001111 112322
Q ss_pred EEEEEc--cCCCEEEEee-CCCcEEEEECCCCceE--EEEEee-----cCCC---CCCCceeEEEeEEecCC-eEEEEcC
Q 003467 207 LSVTWS--ADGNMLYSGS-SDGYIRSWDAKLGYEI--YRITVG-----LGGL---GSGPELCIWSLLSLRCG-TLVSADS 272 (817)
Q Consensus 207 ~~v~~s--~dg~~l~s~~-~dg~i~vwd~~~g~~~--~~~~~~-----~~~~---~~~~~~~v~~v~~~~~~-~l~s~~~ 272 (817)
..+++. ..+.+|..+. ..++|.|+|-.-.+.. ..+..+ ..+. ..+..-.|.-..-.+++ .=+.|..
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G 220 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG 220 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC
Confidence 345554 3356666554 4689999985422211 001100 0000 00000011111111111 2334455
Q ss_pred CCcEEEEeCCCCeEEEEeec--CccCeeEEEEec------CCCEEEEEccCCcEEEEEeeccc
Q 003467 273 TGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAP------SHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~------~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
-|.|-++|.. |.+++++.. .-..-..|+..| .+..|+---.||+|..||..+++
T Consensus 221 ~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 221 LGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred cceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 6789999997 888888842 223455677655 35666655569999999998877
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.27 E-value=3.4 Score=41.98 Aligned_cols=159 Identities=11% Similarity=0.158 Sum_probs=96.0
Q ss_pred CCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeee--cCCcc-cccee-EEEEecCCCEEEEEecCCcEEEE
Q 003467 492 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR--QLPRK-LQFAH-SMIFSYDSSQLIIAGHDRRIYVV 567 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~-~~~fspd~~~l~~~~~dg~i~v~ 567 (817)
..+..+-+.|||+++.+-+..++.++.+.+..- . .++. .-++. ...++ ++..-..|.-|.++..||.|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l--~---~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSL--Q---IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeeccccc--c---hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 456677889999999997779999999976211 1 1111 01110 01222 22223356677888889988766
Q ss_pred -Ecc-CCc----eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 568 -DVS-SSE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 568 -d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
|.. ++. .++.++- ....+..+.--.+.+-+++-+..|++.++.....+....-+... .+..
T Consensus 296 Fdvr~~~~p~l~h~R~f~l-----------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~~~ 362 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKL-----------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--APQL 362 (733)
T ss_pred eeeecCCCCcceeeecccc-----------CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--Ccce
Confidence 432 222 2222221 23444444433345567777888888888765555433332333 6778
Q ss_pred EEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 642 AGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 642 l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
+++|| .+.+|++-. .|.++++.+++..
T Consensus 363 ~~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 363 VAMSP-NQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eeeCc-ccchheeec-CCceEEEEecCCC
Confidence 89999 888887754 4679999998875
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.08 E-value=2.6 Score=38.72 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=68.3
Q ss_pred CEEEEEecCCcEEEEEcc--CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC------cEEEE---E
Q 003467 553 SQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------DVYIF---N 621 (817)
Q Consensus 553 ~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg------~i~vw---d 621 (817)
+.|.++.....|.+|++. ..+++.+|.. -+.|..+.++..|+||++--.+. .+++| +
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T------------v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST------------VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc------------hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 555555667789999987 4567788885 68899999999999999974332 45665 2
Q ss_pred CC--Ccc---------------------eEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 622 LE--IQR---------------------QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 622 ~~--~~~---------------------~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
.. ..+ ....+..+-..++.+++..|..|+ |++|+ ++.+.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEE
Confidence 21 001 011111112357888999995565 55555 5678999886654
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=1.1 Score=50.90 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=94.2
Q ss_pred eeeeecCCCCeEEEEecCCCcEEEEE---cCCceEEEEeecCCCCCceEEEeeecCCcc------ccceeEEEEecCCC-
Q 003467 484 VQVKSKASRKIICSTISNSGMLFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRK------LQFAHSMIFSYDSS- 553 (817)
Q Consensus 484 ~~~~~~~~~~i~~~~~s~~g~~la~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~fspd~~- 553 (817)
..+.......|......+|+...++. .+..|..||+..-..... .....+..+ .....++.|.|.=.
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~---~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~ 169 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY---ETTVPLKNSATSFEKPVFQLKNVWNPLVPL 169 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh---hhccccccccchhccccccccccccCCccc
Confidence 34455555677788888898876662 334677777764221111 001111111 12345666766422
Q ss_pred EEEEEecCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEe
Q 003467 554 QLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS 632 (817)
Q Consensus 554 ~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~ 632 (817)
..++...|+.|++..+... ....++. .....++++|||-|+.|++|...|++.=|...-. ....++
T Consensus 170 n~av~l~dlsl~V~~~~~~~~~v~s~p------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip 236 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLAQNVTSFP------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIP 236 (1405)
T ss_pred hhhhhccccchhhhhhhhhhhhhcccC------------cccceeeEEeccccceeeEecCCCeEEEeecccc-eeeccc
Confidence 2345567888888876422 2333344 4678999999999999999999999988865432 222232
Q ss_pred ---cCCCCCeEEEEecCCCCCeEEEE
Q 003467 633 ---RLEGASVTAAGFPPQNNNVLIIT 655 (817)
Q Consensus 633 ---~~~~~~i~~l~~sp~d~~~l~~~ 655 (817)
......|.++.|-. ...+|++-
T Consensus 237 ~Pp~~e~yrvl~v~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLS-TQEFLVVY 261 (1405)
T ss_pred CCCcCCCcceeEEEEec-ceeEEEEe
Confidence 22336899999997 66666553
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.80 E-value=3.1 Score=47.00 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCceeEEEEccCCCEEEEEeCCCcEEEEECC----------Ccce--EE-EEe-------cCCCCCeEEEEecCC--CCC
Q 003467 593 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLE----------IQRQ--HW-FIS-------RLEGASVTAAGFPPQ--NNN 650 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~----------~~~~--~~-~~~-------~~~~~~i~~l~~sp~--d~~ 650 (817)
.-.|..+.+||+|++||..+..| |.|..+. .++. .+ .++ ......|..+.|+|. ++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 45789999999999999999877 5555542 1111 11 111 112357889999992 257
Q ss_pred eEEEEecCCeEEEEEcCCC
Q 003467 651 VLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 651 ~l~~~~~d~~i~vwd~~~~ 669 (817)
.|++-++|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999754
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=7.2 Score=35.46 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=72.1
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.-+-.-.+|.-.++|..+-+.+ ..+. -++.=+.++ .|++.|+.+....+++.-|.++-....++.+...+.
T Consensus 103 ~y~LTw~egvaf~~d~~t~~~l---g~~~-y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~--- 173 (262)
T COG3823 103 FYQLTWKEGVAFKYDADTLEEL---GRFS-YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV--- 173 (262)
T ss_pred EEEEEeccceeEEEChHHhhhh---cccc-cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe---
Confidence 3444556778888888755444 2222 123333443 466667777666678888877766666666543331
Q ss_pred CceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee------------cCccCeeEEEEecCCCEEEEEc
Q 003467 252 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS------------FHKGDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 252 ~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~l~~s~~~~~l~~~~ 313 (817)
.-..++.+.|. || .++-.-.+..|...|.++|+.+..+. .|..-.+.+++.|++..++..|
T Consensus 174 pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 174 PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11223333343 33 33333334445555666666554432 2344567799999886665544
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.56 E-value=0.62 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=26.5
Q ss_pred CceeEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 003467 594 PPITKMFTSSDG---QWLAAVNCFGDVYIFNLEI 624 (817)
Q Consensus 594 ~~i~~l~~s~dg---~~la~~~~dg~i~vwd~~~ 624 (817)
+.|.++.|||+. .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4999999999999999984
No 450
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=11 Score=36.36 Aligned_cols=254 Identities=12% Similarity=0.017 Sum_probs=142.8
Q ss_pred CceeeeeeccCC-CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 2 PIYRNSSIDWKP-SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 2 ~~hr~r~~~~h~-~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
++|+--++-+|- ..|.+++...+-.++..|-.---.-+||...... ......+.. .+-+..+.++.+-
T Consensus 30 d~~v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~-~~l~~~i~~--~~l~~Dv~vse~y-------- 98 (370)
T COG5276 30 DVHVGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTH-DVLLSVINA--RDLFADVRVSEEY-------- 98 (370)
T ss_pred ccccceEEeeeccCCcccccccccccccccCceEeeccccCcccccC-cceEEEEeh--hhhhheeEecccE--------
Confidence 467777777777 6788888776655555543322233455542211 112222222 3566777777543
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeec--CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.+.+..+.-+++.|+.+...-..+... .+--.++..+ |
T Consensus 99 vyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-------------------------------------- 138 (370)
T COG5276 99 VYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-------------------------------------- 138 (370)
T ss_pred EEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C--------------------------------------
Confidence 666666667999998775432222111 1222333333 3
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
++..++.-|.-+.+.|+.+.....+........+.-..++.| |++-..++.|+-+.+-|+.+....
T Consensus 139 ------------n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 139 ------------NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred ------------CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC
Confidence 355555545566788998776665555555444445666666 778888889999999999765433
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec-CccCeeEE-EEecCCCEEEEEccCC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNAL-AAAPSHNRVFSTGSDG 316 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l-~~s~~~~~l~~~~~dg 316 (817)
.-+..- .....+.++..+++.-+++....| +.+-|...-+..+.+-. ....+.++ .+.-.+++.+.+..+.
T Consensus 205 vli~~~------n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~ 277 (370)
T COG5276 205 VLIGSY------NTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAK 277 (370)
T ss_pred eEEEEE------ecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCCceEeeccccCCcccccceecccceeeeecccc
Confidence 222210 233367888888777444444333 66667665443333321 12223332 2333467777777777
Q ss_pred cEEEEEeeccc
Q 003467 317 QVILYKASCES 327 (817)
Q Consensus 317 ~i~iw~~~~~~ 327 (817)
-+.+-+..+..
T Consensus 278 gl~~idisnp~ 288 (370)
T COG5276 278 GLPIIDISNPP 288 (370)
T ss_pred CceeEeccCCC
Confidence 77777776544
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.15 E-value=17 Score=38.03 Aligned_cols=132 Identities=12% Similarity=0.150 Sum_probs=74.4
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE-EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~ 283 (817)
....+..++||.+++.+..-..++-|| .|... ..+.. .....+.++.+.+++.++..+..|.+.. ....
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~ 309 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTRGGGLYV-SKGT 309 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-------CCccceeeeeEcCCCCEEEEeCCceEEE-ecCC
Confidence 345566778888777765543344454 34332 22221 3556788999999997776777776544 3333
Q ss_pred Ce-----EEEEeec--CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCcc
Q 003467 284 GT-----LLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV 356 (817)
Q Consensus 284 ~~-----~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (817)
++ ....... ....+..+.|.++++ ++.+|..|.+.... ..+ +.|........-....
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G--------------~tW~~~~~~~~~~~~l 373 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGG--------------KSWKRDKGADNIAANL 373 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCC--------------cceeEccccCCCCcce
Confidence 43 2222222 123588899988776 55555777665543 222 3455543323334456
Q ss_pred ceeEee
Q 003467 357 RALTVA 362 (817)
Q Consensus 357 ~~l~~~ 362 (817)
+.+.|.
T Consensus 374 y~v~f~ 379 (398)
T PLN00033 374 YSVKFF 379 (398)
T ss_pred eEEEEc
Confidence 677764
No 452
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.00 E-value=12 Score=41.20 Aligned_cols=96 Identities=9% Similarity=0.139 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCEEEEeeCCC-----cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEE
Q 003467 205 RVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW 279 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iw 279 (817)
.-..+.|-|+|..+++-+.|| .|+.+. ++|-....+.. ..+....+..++|.-...++.......+++|
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~l-----r~~~dEk~~~~~wn~~s~vlav~~~n~~~lw 321 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDL-----RVGCDEKAFLENWNLLSTVLAVAEGNLLKLW 321 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccc-----cCCchhhhhhhhhhHHHHHHHHhhcceEEEE
Confidence 334589999999999987664 244443 23322222211 1133444555666555555555666789999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCC
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSH 306 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~ 306 (817)
-..+....-...-.-..+.-+.|+|..
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeecccc
Confidence 877654433333334567778899865
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.70 E-value=0.62 Score=51.30 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEE-----------EEccCCCEEEEEeCCC
Q 003467 547 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM-----------FTSSDGQWLAAVNCFG 615 (817)
Q Consensus 547 ~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-----------~~s~dg~~la~~~~dg 615 (817)
-|-++..++.++..+++|++....+... .-|.+ |..+++.+ ..||||+.+|.+..||
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-----------Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-----------HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-HHHHh-----------cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 3445677888888889999888764433 33444 44444433 3799999999999999
Q ss_pred cEEEEEC
Q 003467 616 DVYIFNL 622 (817)
Q Consensus 616 ~i~vwd~ 622 (817)
.++.|.+
T Consensus 258 ~v~f~Qi 264 (1283)
T KOG1916|consen 258 SVGFYQI 264 (1283)
T ss_pred ccceeee
Confidence 9988876
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.68 E-value=31 Score=40.08 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCeEEEEec-------CCCcEEEEEcCCceEEEEeecCCC------C------CceEEEeeecCCccccceeEEEEec-C
Q 003467 492 RKIICSTIS-------NSGMLFAYSDHVKPSLFELKKGKV------G------QGEWIINKRQLPRKLQFAHSMIFSY-D 551 (817)
Q Consensus 492 ~~i~~~~~s-------~~g~~la~~~~~~i~l~~~~~~~~------~------~~~~~~~~~~~~~~~~~i~~~~fsp-d 551 (817)
.+|..+.|+ +..++|++-....+.|+....... . ..+..+..... ...+...++|+| +
T Consensus 80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t--gg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT--GGFPHADVAFNPWD 157 (765)
T ss_pred CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhc--CCCccceEEeccCc
Confidence 556666666 233588888888888888222111 1 01111111111 112567899998 5
Q ss_pred CCEEEEEecCCcEEEEEccCCce--eeeeccCcccccccC---CCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcc
Q 003467 552 SSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREI---QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 552 ~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 626 (817)
.+.||+....|+..||++..... ...+....... ..+ +.....-..+.|.++-..|++.+.. .+.++|+++..
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW 235 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence 67999999999999999921111 01111100000 000 0012344578899998888887655 59999999887
Q ss_pred eEE-EEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 627 QHW-FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 627 ~~~-~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
... .........|..+.-+|.+..++++-+ ...|...++..
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 643 222223368999998883344555544 36788888877
No 455
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.56 E-value=31 Score=39.75 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=42.5
Q ss_pred eEEEEcCCCcEEEEeCC-CCeEEEE--eecCccCeeEEEEecCC------CEEEEEccCCcEEEEEeeccc
Q 003467 266 TLVSADSTGSVQFWDSR-HGTLLQA--HSFHKGDVNALAAAPSH------NRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~-~~~~~~~--~~~h~~~v~~l~~s~~~------~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+++.+-+.|.+..+... ++++..- -..-...+.|+++.++. ++++.++.|+.++++.+....
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d 621 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD 621 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence 56666666666666553 3333222 13346789999998875 579999999999999987543
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.51 E-value=1.5 Score=41.43 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=52.7
Q ss_pred EEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccc---ccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 546 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD---REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 546 ~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
+.+..++.+|++.+.+|.+++||+.+++.+..-........ ..-......|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 34566899999999999999999988765433211000000 00002567788899998888777655 577888886
Q ss_pred CCcc
Q 003467 623 EIQR 626 (817)
Q Consensus 623 ~~~~ 626 (817)
+-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 5443
No 457
>PHA02790 Kelch-like protein; Provisional
Probab=91.49 E-value=11 Score=41.06 Aligned_cols=102 Identities=5% Similarity=-0.101 Sum_probs=47.4
Q ss_pred CEEEEEeCCC---cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCC
Q 003467 171 RRVALACDDG---CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 247 (817)
Q Consensus 171 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~ 247 (817)
...+.|+.++ .+..||..++. ......+.........+ .-+|+..+.| |.+.+||..+++-...-..
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m---- 433 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDP---- 433 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCC----
Confidence 4666666543 46778876443 32222222111111122 2356666666 3577888876654322111
Q ss_pred CCCCCceeEEEeEEecCCeEEEEcCC-----CcEEEEeCCCCe
Q 003467 248 LGSGPELCIWSLLSLRCGTLVSADST-----GSVQFWDSRHGT 285 (817)
Q Consensus 248 ~~~~~~~~v~~v~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 285 (817)
.....-.+++...+..++.|+.+ ..+..||..+++
T Consensus 434 ---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 434 ---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 11111123344434456666643 235566665443
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=12 Score=41.03 Aligned_cols=179 Identities=10% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
.-.|+|++.. |..+.++.-..+++-.|.|+.+.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e---------------------------------------------- 95 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE---------------------------------------------- 95 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc----------------------------------------------
Confidence 3468888854 45555544444578889999887
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEe-eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYH-RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
.|.+...+|++++|++. +...... .-.......|..+.|..+|=.+.+. +|.+.+-+-.....+.++...
T Consensus 96 -----eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~di- 166 (829)
T KOG2280|consen 96 -----ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDI- 166 (829)
T ss_pred -----eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCC-
Confidence 88899999999999996 3333211 1112233456666665566555444 445444332222233333310
Q ss_pred CCCCCCCceeEEEeEEecCC---e-EEEEc-CCCcEEEEeCC--CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcE
Q 003467 246 GGLGSGPELCIWSLLSLRCG---T-LVSAD-STGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~---~-l~s~~-~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
+........|.+ .+++ . ++-.. ..+ ..+.... ..+. ..+......+..+++||+.++|+--..+|.|
T Consensus 167 --P~~~~~~~~Wt~--~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~-~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 167 --PYNELPKSCWTV--FQPHRQSTILLDVDVAVG-LHICQVEESRVQL-HALSWPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred --CCccCCCcceeE--ecCCCcceeEEeechhhh-hcccceecccccc-cccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence 000111122222 2222 1 11111 111 1111111 1221 2222234678889999999999999999999
Q ss_pred EEEEeeccc
Q 003467 319 ILYKASCES 327 (817)
Q Consensus 319 ~iw~~~~~~ 327 (817)
.+-+.+..+
T Consensus 241 ~~vs~D~~~ 249 (829)
T KOG2280|consen 241 WVVSIDLSQ 249 (829)
T ss_pred EEEecchhh
Confidence 988877655
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.17 E-value=15 Score=38.24 Aligned_cols=143 Identities=11% Similarity=0.079 Sum_probs=84.9
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-------EEEEeeCCCcEEEEECCC-CceEEEEEee
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-------MLYSGSSDGYIRSWDAKL-GYEIYRITVG 244 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-------~l~s~~~dg~i~vwd~~~-g~~~~~~~~~ 244 (817)
+..|.....++--|++.|+.+ ....-|..- -+.|.|+.+ .-+.|-++..|.--|.+- |..+......
T Consensus 483 ~~dg~~~~kLykmDIErGkvv---eeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVV---EEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred EecCCCcccceeeecccceee---eEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 334555556666666655444 333333332 466777532 233444455555556542 3222221100
Q ss_pred cCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 245 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
. -.......+..-..+|+++.++..|.|++||--.-+....+++....|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 558 -d---Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 -D---YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred -h---ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 0 012233444455567899999999999999976444445567778899999999999998877654 67777765
Q ss_pred c
Q 003467 325 C 325 (817)
Q Consensus 325 ~ 325 (817)
-
T Consensus 633 i 633 (776)
T COG5167 633 I 633 (776)
T ss_pred c
Confidence 4
No 460
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.06 E-value=16 Score=36.59 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=84.0
Q ss_pred ceeEEEEecCCCEEEEE------------------ecCCcEEEEEccCCceeeeeccCccccc----------------c
Q 003467 542 FAHSMIFSYDSSQLIIA------------------GHDRRIYVVDVSSSELLHTFTPCREEHD----------------R 587 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~~~~~----------------~ 587 (817)
....+.+.++|..|++. -.|+.+...|+++++++........... .
T Consensus 58 d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~ 137 (299)
T PF14269_consen 58 DHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSS 137 (299)
T ss_pred CccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCC
Confidence 35566677788877722 1245677788888988877654221110 0
Q ss_pred cCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCC----CeEEEEecCCCCCeEEEEecCCeEEE
Q 003467 588 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA----SVTAAGFPPQNNNVLIITTSSNQVYV 663 (817)
Q Consensus 588 ~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~i~~l~~sp~d~~~l~~~~~d~~i~v 663 (817)
..+..--.|+++...++|.+|+++-.-..|.+.|-.+++..|.+.....+ .-...+|.. |.+++-....++.|.+
T Consensus 138 ~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 138 SFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISL 216 (299)
T ss_pred CCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEE
Confidence 11222345788898899999999999999999999999999998544221 112355555 6666666677889999
Q ss_pred EEcC
Q 003467 664 FDVE 667 (817)
Q Consensus 664 wd~~ 667 (817)
||=.
T Consensus 217 FDN~ 220 (299)
T PF14269_consen 217 FDNA 220 (299)
T ss_pred EcCC
Confidence 9863
No 461
>PRK10115 protease 2; Provisional
Probab=90.93 E-value=34 Score=39.13 Aligned_cols=54 Identities=6% Similarity=-0.135 Sum_probs=35.5
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeC-----CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCc
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSI-----DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSS 122 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 122 (817)
-.+..+.||||+++ |+.+.. ...|.+-|+.+|+.+...-... . ..++|.+|+..
T Consensus 127 ~~l~~~~~Spdg~~------la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTI------MALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCE------EEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCE
Confidence 56788899999987 665432 2368999999886432221111 1 45899999854
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.57 E-value=21 Score=37.92 Aligned_cols=173 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred EeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC-----
Q 003467 531 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG----- 605 (817)
Q Consensus 531 ~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg----- 605 (817)
+....+...+...+.|+|.|||++|++--..|.|++++..++....... ...............|+++||-
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~----l~~v~~~~ge~GLlglal~PdF~~~~~ 95 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFT----LPEIVNDAQHNGLLGLALHPDFMQEKG 95 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeec----CCceeccCCCCceeeEEECCCccccCC
Q ss_pred -CEEEEEe----------CCCcEEEEECC--------CcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 606 -QWLAAVN----------CFGDVYIFNLE--------IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 606 -~~la~~~----------~dg~i~vwd~~--------~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
++|.... ....|.-|.+. .......++......-..|+|.| |+.++++.+..+.-..-+.
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~ 174 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANF 174 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccc
Q ss_pred CCCccccchhcccCccCc-----------chhcCCCceeEEEECCCCC-----------CCEEEEEcCceEEEEEcC
Q 003467 667 EAKQLGEWSMQHTFVLPR-----------RYQEFPGEVIGLSFSPSPS-----------SSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 667 ~~~~~~~ws~~~~~~~~~-----------~~~~~~~~v~~l~f~p~~~-----------~~~~~~~~~~~~~~~d~~ 721 (817)
..... .+ .+..+.++|..|. +||. ...||.++-+--..+.+.
T Consensus 175 ~~~~~-----------aQ~~~~~~~~~~~d~~~~~GkILRin--~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~d 238 (454)
T TIGR03606 175 FLPNQ-----------AQHTPTQQELNGKDYHAYMGKVLRLN--LDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFT 238 (454)
T ss_pred cCcch-----------hccccccccccccCcccCceEEEEEc--CCCCCCCCCCccCCCcceEEEEeccccceeEEC
No 463
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.26 E-value=24 Score=36.27 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=106.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc----cCCCE--EEEee-CC---CcEEEEECC--CCceE
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS----ADGNM--LYSGS-SD---GYIRSWDAK--LGYEI 238 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s----~dg~~--l~s~~-~d---g~i~vwd~~--~g~~~ 238 (817)
.+++....++-+.+||+. ++.+... . .++++.+..- -.|+. |+.++ .+ ..|++|.+. ++ .+
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~---~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-~L 141 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSL---P--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-EL 141 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-EE
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEee---c--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-cc
Confidence 477778888999999997 6666432 2 2333333321 13443 34443 22 469999775 33 23
Q ss_pred EEEEeecCCCCCCCceeEEEeEEe--c-CC--eEEEEcCCCcEEEEeCC---CC----eEEEEeecCccCeeEEEEecCC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSL--R-CG--TLVSADSTGSVQFWDSR---HG----TLLQAHSFHKGDVNALAAAPSH 306 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~--~-~~--~l~s~~~dg~i~iwd~~---~~----~~~~~~~~h~~~v~~l~~s~~~ 306 (817)
..+... ..........++.+++. + +| +.+....+|.+..|.+. .+ +++++|.. ...+..|+.....
T Consensus 142 ~~v~~~-~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 142 TDVTDP-AAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp EE-CBT-TC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred eEcCCC-CcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 333210 00000122335666664 3 34 56667788988777654 23 56777765 4578889999888
Q ss_pred CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc--ccCCCccceeEeecccCCCCCCCccccccccCCCC
Q 003467 307 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 384 (817)
Q Consensus 307 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (817)
.+|+.+-.+.-|.-|+.+..... .. ..+... .....+|..|++... ++++
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~----------~~--~~v~~~~g~~l~aDvEGlaly~~-------~~g~--------- 271 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGN----------DR--TLVASADGDGLVADVEGLALYYG-------SDGK--------- 271 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--------------EEEEEBSSSSB-S-EEEEEEEE--------CCC----------
T ss_pred CCEEEecCccEEEEEecCCCCCC----------cc--eeeecccccccccCccceEEEec-------CCCC---------
Confidence 89999988876666665432210 01 122222 235678888888511 1121
Q ss_pred CccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 385 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+-+|+|.-.++...+|+...
T Consensus 272 -------------gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 272 -------------GYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -------------EEEEEEEGGGTEEEEEESST
T ss_pred -------------eEEEEEcCCCCeEEEEecCC
Confidence 22666666778999999875
No 464
>PRK13615 lipoprotein LpqB; Provisional
Probab=90.24 E-value=32 Score=37.69 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=54.8
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY 96 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~ 96 (817)
.+++.|+|+..+|.-..++.+.++...... ...+.+ ..++.-.|.++| + +=+.-.+....+....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-----~~~~~~---~~Lt~PS~d~~g-~------vWtv~~g~~~~l~~~~ 401 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-----VLLDTR---PGLVAPSLDAQG-Y------VWSTPASDPRGLVAWG 401 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc-----eeeccC---CccccCcCcCCC-C------EEEEeCCCceEEEEec
Confidence 788999999999988777878887665221 222222 356677777776 3 4443332233333332
Q ss_pred -CCeEEE-EEe-ecCceEEEEeeecCCCcc
Q 003467 97 -DLKQKI-VLQ-SIDFSIWQMAVAPSNSSL 123 (817)
Q Consensus 97 -~~~~~~-~~~-~~~~~i~~~~~s~~~~~~ 123 (817)
+|.... ... .-++.|..+..|+||.+.
T Consensus 402 ~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~ 431 (557)
T PRK13615 402 PDGVGHPVAVSWTATGRVVSLEVARDGARV 431 (557)
T ss_pred CCCceEEeeccccCCCeeEEEEeCCCccEE
Confidence 233211 111 124689999999999654
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.99 E-value=2.4 Score=38.52 Aligned_cols=85 Identities=22% Similarity=0.155 Sum_probs=52.3
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCC-----------------CCcEE-------E------EEEcCC--
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGT-----------------SGWHC-------Q------LTVHGD-- 58 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~-----------------~~~~~-------~------~~~~g~-- 58 (817)
..|....||+||.||+ ||++.. ..|.|.+..+.. ..+.. . ......
T Consensus 2 ~~ps~~~~l~WS~Dg~-laV~t~-~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 79 (173)
T PF12657_consen 2 SSPSCPNALAWSEDGQ-LAVATG-ESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMD 79 (173)
T ss_pred CCCCCCcCeeECCCCC-EEEEcC-CeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccc
Confidence 3466678999999995 666655 458888332211 00000 0 111111
Q ss_pred ----CCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC
Q 003467 59 ----PKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD 97 (817)
Q Consensus 59 ----~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 97 (817)
....|.+++|||-|--......|++...++.|.+|.-..
T Consensus 80 ~~~~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 80 DEEISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccccccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 113799999999763222346788999999999998664
No 466
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.73 E-value=29 Score=36.44 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC--Ce-
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD--LK- 99 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~- 99 (817)
+...|++|+..|.++||++..+... -.+..... -+.+|-.|+.-.-.. ......||. =.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s-~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVS-GSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccC-CCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 3468999999999999999754421 12222322 246788887653210 001123444 4567788888721 11
Q ss_pred ------EEEEEeecC--ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 100 ------QKIVLQSID--FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 100 ------~~~~~~~~~--~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
.+..+..|. ...+.+++-|-|.-- .-.
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~---------------------------------------------~~~ 146 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVK---------------------------------------------GRD 146 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCC---------------------------------------------Cce
Confidence 112222222 334445554544100 013
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEEC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 232 (817)
.+.+-+-||.+.+|+-+ ...+.+.+.. -----.++|.+..+.+++++++..|.-|..
T Consensus 147 ~IcVQS~DG~L~~feqe---~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQE---SFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEEEEecCceEEEEeCC---cEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 89999999999999864 3333344443 222335678888889999999888888865
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.36 E-value=0.049 Score=55.16 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=103.0
Q ss_pred EEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCC
Q 003467 65 SLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSND 144 (817)
Q Consensus 65 ~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (817)
...|-|.+.- |+.++.+..+..||-. |+...... ..+..-.|+|..+++.
T Consensus 39 ~~~w~~e~~n------lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdv---------------------- 88 (615)
T KOG2247|consen 39 IHRWRPEGHN------LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDV---------------------- 88 (615)
T ss_pred eeeEecCCCc------eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccch----------------------
Confidence 3467777765 8888888889988843 33332222 2344456777766642
Q ss_pred CCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCC-ccceEEEEEEccCCCEEEEeeC
Q 003467 145 SDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR-VSGRVLSVTWSADGNMLYSGSS 223 (817)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~ 223 (817)
.++.+-..+.+++||+.+....+ ..+.+ |.... +.|++.+..++.+..
T Consensus 89 ---------------------------lavlAek~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~el~ig~~ 137 (615)
T KOG2247|consen 89 ---------------------------LAVLAEKTGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTPELVIGNN 137 (615)
T ss_pred ---------------------------hhhhhhcCCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCcccccccc
Confidence 56666778999999997433211 11111 22222 789999999999999
Q ss_pred CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC
Q 003467 224 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 282 (817)
Q Consensus 224 dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~ 282 (817)
.|.+++++-.+.+.+..+- .|...+.++++.+.++.+.++.|..+.+-...
T Consensus 138 ~gn~viynhgtsR~iiv~G--------kh~RRgtq~av~lEd~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 138 AGNIVIYNHGTSRRIIVMG--------KHQRRGTQIAVTLEDYVILCDCDNTLSVTTQE 188 (615)
T ss_pred ccceEEEeccchhhhhhhc--------ccccceeEEEecccceeeecCcHHHHHHhhhc
Confidence 9999999988777665553 48889999999999988888888766554443
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.34 E-value=23 Score=36.13 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=65.6
Q ss_pred EEEEEEccCCCEEEEeeCC------CcEEEEECCCCceEEEEEeecCC-------CCCCCceeEEEeEEecCCe-EEEEc
Q 003467 206 VLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYEIYRITVGLGG-------LGSGPELCIWSLLSLRCGT-LVSAD 271 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~g~~~~~~~~~~~~-------~~~~~~~~v~~v~~~~~~~-l~s~~ 271 (817)
.-+|++.++|.++++--.+ ..|+.++.. |+.+..+..+..- .........-+++++|+|. |+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4478888888888887667 789999976 8887777543221 2345667889999999995 55543
Q ss_pred C-----CC--c-------EEE--EeCCC-CeEEE----Eeec-----CccCeeEEEEecCCCEEEE
Q 003467 272 S-----TG--S-------VQF--WDSRH-GTLLQ----AHSF-----HKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 272 ~-----dg--~-------i~i--wd~~~-~~~~~----~~~~-----h~~~v~~l~~s~~~~~l~~ 311 (817)
. |+ . +++ +|..+ +.... .+.. ....|..+.+-++++.|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 21 1 444 45443 32222 2221 2456777777777775553
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.16 E-value=2.1 Score=40.53 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=48.1
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC-------CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC
Q 003467 211 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG-------SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 211 ~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~-------~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~ 283 (817)
+..++.+|++.+.+|.+++||+.+++.+..-.. ..+.. ......|..+.+..+|..+..-++|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 445788999999999999999999877654410 00000 0344566777777777544444557777777664
Q ss_pred Ce
Q 003467 284 GT 285 (817)
Q Consensus 284 ~~ 285 (817)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.15 E-value=0.061 Score=54.53 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=94.5
Q ss_pred EEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC
Q 003467 19 LATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL 98 (817)
Q Consensus 19 la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 98 (817)
..+-|.+.-||+++.+..+..||-... ..+.+...+.--.++|..+++. .++.+-..+.+.+||+.+.
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq-------~~le~n~tg~aldm~wDkegdv-----lavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQ-------VILELNPTGKALDMAWDKEGDV-----LAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcc-------eecccCCchhHhhhhhccccch-----hhhhhhcCCCeeechhhhh
Confidence 455676666999999999999995542 2333444566778889888765 1334556788999999764
Q ss_pred eEEEEEeecC-ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 99 KQKIVLQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 99 ~~~~~~~~~~-~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
.. +.++..+ ..-.-+.|++.. ..++.+.
T Consensus 108 yt-qqLE~gg~~s~sll~wsKg~--------------------------------------------------~el~ig~ 136 (615)
T KOG2247|consen 108 YT-QQLESGGTSSKSLLAWSKGT--------------------------------------------------PELVIGN 136 (615)
T ss_pred hH-HHHhccCcchHHHHhhccCC--------------------------------------------------ccccccc
Confidence 32 2222111 111115666665 3777788
Q ss_pred CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEE
Q 003467 178 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 230 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 230 (817)
..|.++|++..+.... .....|..++++++|.+.+. .+.++.|..+.+-
T Consensus 137 ~~gn~viynhgtsR~i---iv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 137 NAGNIVIYNHGTSRRI---IVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred cccceEEEeccchhhh---hhhcccccceeEEEecccce-eeecCcHHHHHHh
Confidence 8999999998765543 34445999999999999865 4555555455443
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.73 E-value=3.9 Score=44.29 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
....++++.-+|.|+-++.|..||+|+++|..+++....|.. ..+-..+.|...| |+++..|..+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~------~~p~~nlv~tnhg--------l~~~tsdrr~l 78 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE------AKPKENLVFTNHG--------LVTATSDRRAL 78 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh------cCCccceeeeccc--------eEEEeccchhh
Confidence 345688899999999999999999999999987653111211 2233467787776 78888888777
Q ss_pred EEECCCCeEEEEEe
Q 003467 92 EWDLYDLKQKIVLQ 105 (817)
Q Consensus 92 vwd~~~~~~~~~~~ 105 (817)
-|. ++|-..+.++
T Consensus 79 a~~-~dgvvqqqfd 91 (1636)
T KOG3616|consen 79 AWK-EDGVVQQQFD 91 (1636)
T ss_pred eee-ccCcchhhcc
Confidence 776 3343333333
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.72 E-value=8.8 Score=45.44 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=43.8
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+...+.+..+.....++.+...+.+-+|+.........+..... ..++++..++++..||.+.+||...+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCc
Confidence 44555555555555555666666677776654333322222111 117788888888889999999988864
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.39 E-value=3.3 Score=37.62 Aligned_cols=40 Identities=23% Similarity=0.517 Sum_probs=30.2
Q ss_pred CCeEEEEecC-----CCCCeEEEEecCCeEEEEEcCCCccccchh
Q 003467 637 ASVTAAGFPP-----QNNNVLIITTSSNQVYVFDVEAKQLGEWSM 676 (817)
Q Consensus 637 ~~i~~l~~sp-----~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~ 676 (817)
..+.+++||| ..+-+||+.+.++.|.+|.-......+|.+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 4789999999 224689999999999999877543345543
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.33 E-value=3 Score=46.40 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=48.3
Q ss_pred cCCEEEEEeCCCcEEEEEecC----CCceeEe--------eccCC-----------ccceEEEEEEcc----CCCEEEEe
Q 003467 169 EDRRVALACDDGCVRIYRITD----SDELIYH--------RSLPR-----------VSGRVLSVTWSA----DGNMLYSG 221 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~----~~~~~~~--------~~~~~-----------h~~~v~~v~~s~----dg~~l~s~ 221 (817)
+...++++..||.+....... +...... +.+.+ ..+.+.+++.+. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556888889999998888763 1111100 01110 123456666666 77899999
Q ss_pred eCCCcEEEEECCCCceEEEEEe
Q 003467 222 SSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 222 ~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
+.|+.+|+||+.+++++..+..
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999888763
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.11 E-value=2.1 Score=27.60 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=25.1
Q ss_pred cCCCEEEEEec-CCcEEEEEccCCceeeeecc
Q 003467 550 YDSSQLIIAGH-DRRIYVVDVSSSELLHTFTP 580 (817)
Q Consensus 550 pd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~ 580 (817)
||+++|+++.. +++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 67888877664 78999999998888887774
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.98 E-value=15 Score=30.98 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=66.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCcc--------eEEEEecCCCCCeEEEEecC----CCCCeEEEEecCCeEEEEEc
Q 003467 599 MFTSSDGQWLAAVNCFGDVYIFNLEIQR--------QHWFISRLEGASVTAAGFPP----QNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 599 l~~s~dg~~la~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~i~~l~~sp----~d~~~l~~~~~d~~i~vwd~ 666 (817)
-.|.....-|+.+..-|.|.|++..... ....+ ... ..|++++-.+ ++.+.|++|+ ...|..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin-~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NIN-QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECC-CceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3454555678888899999999876432 22223 222 3677775433 2455666665 556999999
Q ss_pred CCCccccchhcccCccCcchhcCCCceeEEEECCCCC--CCEEEEEcCceEEEEEcC
Q 003467 667 EAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS--SSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 667 ~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~--~~~~~~~~~~~~~~~d~~ 721 (817)
+...- .-++..++.|.++.+-.-+. ...+++-|.-.+.-+|..
T Consensus 81 ~~N~d------------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSD------------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred ccCch------------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 87752 12455567788887743322 345666666677778754
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.01 E-value=3.3 Score=26.65 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=29.5
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCcceEEEEecCCCCCeEEEEec
Q 003467 603 SDGQWLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP 645 (817)
Q Consensus 603 ~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~s 645 (817)
||+++|.++. .+++|.++|..+++....++.. .....++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEeC
Confidence 6788777766 5788999999998877776653 345566553
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.78 E-value=45 Score=35.10 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=66.6
Q ss_pred eEEEEcCCCcEEEEeCCCCe-----EEEEeecCccCeeEEEEec-----CCCEEEEEccCCcEEEEEeecccCCCCCCCC
Q 003467 266 TLVSADSTGSVQFWDSRHGT-----LLQAHSFHKGDVNALAAAP-----SHNRVFSTGSDGQVILYKASCESIGPNDGLS 335 (817)
Q Consensus 266 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~s~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 335 (817)
+|+.|+..|.++||+...+. ++-.. .-..+|..+.... +...|++ -.-..+.+|.+.....
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g------- 109 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG------- 109 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC-------
Confidence 79999999999999986432 22222 2357888887643 2234554 4667899998844331
Q ss_pred CccccceEEEeeccccC--CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 003467 336 SSEVIKKWIYVGSVRAH--THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 413 (817)
Q Consensus 336 ~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~ 413 (817)
..+....+. +.....| ......++.. |-|. ..+.+++..-+.||.+.+|
T Consensus 110 ~~~~g~~~~-L~~~yeh~l~~~a~nm~~G---------~Fgg-------------------~~~~~~IcVQS~DG~L~~f 160 (418)
T PF14727_consen 110 TVEHGNQYQ-LELIYEHSLQRTAYNMCCG---------PFGG-------------------VKGRDFICVQSMDGSLSFF 160 (418)
T ss_pred CcccCcEEE-EEEEEEEecccceeEEEEE---------ECCC-------------------CCCceEEEEEecCceEEEE
Confidence 111222332 2222222 2223333332 2221 0123589999999999999
Q ss_pred eCCccc
Q 003467 414 CANEFT 419 (817)
Q Consensus 414 ~~~~~~ 419 (817)
+-+...
T Consensus 161 eqe~~~ 166 (418)
T PF14727_consen 161 EQESFA 166 (418)
T ss_pred eCCcEE
Confidence 987654
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.46 E-value=18 Score=42.66 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEe-ec-CCCCCCCceEEEeeCCCeEEEEECCC----CeEE----
Q 003467 32 REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWC-HA-GKMGLPGGRLFSSSIDGSVSEWDLYD----LKQK---- 101 (817)
Q Consensus 32 ~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s-~~-~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~---- 101 (817)
+.|+.+.+|++.++.. ...+.+- ...|..|..- |. |-+.....+|+..+.--.|.++-+.- +...
T Consensus 96 TiDn~L~lWny~~~~e----~~~~d~~-shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE----LAEYDGL-SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCc----cccccch-hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 3578899999998552 3344433 4566666543 22 11111223355555555566665421 1111
Q ss_pred -EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 102 -IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 102 -~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
..+...+..|.++....+| .++.+|.||
T Consensus 171 ~~~i~~dg~~V~~I~~t~nG---------------------------------------------------RIF~~G~dg 199 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENG---------------------------------------------------RIFFAGRDG 199 (1311)
T ss_pred ceeeecCCceEEEEEeccCC---------------------------------------------------cEEEeecCC
Confidence 2333456777888866666 788888888
Q ss_pred cEEEEEecCCCcee-------------------EeeccC-CccceEEEEEEccCCCEEEEeeCCCcEEEEECCC
Q 003467 181 CVRIYRITDSDELI-------------------YHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 181 ~i~iwd~~~~~~~~-------------------~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 234 (817)
.|+=.-.+.....- ..-.+. .+..+|..++....-..+.+-+..|+|.+||+..
T Consensus 200 ~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 55433332211110 011222 5677999999998888999999999999999975
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.17 E-value=1.9 Score=43.74 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=95.3
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEE-cCCCCCcEE-EEEEeecCCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTV-HGDPKSRIS-SLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~g~~~~~V~-~l~~s~~~~~~~~~~~l~s~ 84 (817)
+.+...++.|..+-..|||++|.+-.. .++.|+++.+.....+..... +|.....|+ ++..-..|.. |..+
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S------LLv~ 286 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS------LLVV 286 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee------EEEE
Confidence 334556678889999999999988655 679999988765321111111 121111222 2222223333 7888
Q ss_pred eCCCeEEEEE-CCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 85 SIDGSVSEWD-LYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 85 ~~d~~i~vwd-~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
..||.|.-|= +..+.. . |-.-|....+.|.....+...
T Consensus 287 ~~dG~vsQWFdvr~~~~-p----~l~h~R~f~l~pa~~~~l~pe------------------------------------ 325 (733)
T COG4590 287 HEDGLVSQWFDVRRDGQ-P----HLNHIRNFKLAPAEVQFLLPE------------------------------------ 325 (733)
T ss_pred cCCCceeeeeeeecCCC-C----cceeeeccccCcccceeeccc------------------------------------
Confidence 8899999884 322111 1 111122222222221100000
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 237 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~ 237 (817)
.+.+-+++-...|++.++.....+.+.+. .--..+.-+++||.+.+|++-. .|.|+++.+++...
T Consensus 326 ----~~rkgF~~l~~~G~L~~f~st~~~~lL~~----~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 326 ----TNRKGFYSLYRNGTLQSFYSTSEKLLLFE----RAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ----cccceEEEEcCCCceeeeecccCcceehh----hhhcCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 00136777788899988876533333221 2223566789999999998754 46888888765443
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.12 E-value=95 Score=38.25 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=48.0
Q ss_pred CCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEc
Q 003467 491 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV 569 (817)
Q Consensus 491 ~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~ 569 (817)
...|.++|+-.+.++++....+.+..+. .. +.. .....++..+.|..++.....++.| ...+|.++-.+-
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~-k~---g~p----~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~~~k 771 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ-KP---GRP----VPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFRLPK 771 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc-CC---CCC----ccCCCCCCCcchhheeeccccceeE-ecCCCceeecCH
Confidence 5678899999999999999999999887 22 211 0122334455788999877655554 566787776554
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.92 E-value=29 Score=32.16 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=79.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC---C---cEEEE-ECCC----CceEE
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD---G---YIRSW-DAKL----GYEIY 239 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d---g---~i~vw-d~~~----g~~~~ 239 (817)
+.|..+.....|.+|++. .+.......+..- +.|..+.++..|++|+|--.+ . .+|+| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~-~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLE-QEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcc-cCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 466565777889999998 3333333455443 789999999999999997543 2 56775 3221 12222
Q ss_pred -EEEee-cCCC------------CCCCceeEEEeEEec-CCeEEEEcCCCcEEEEeCCCCeE-EE-----Eee----cCc
Q 003467 240 -RITVG-LGGL------------GSGPELCIWSLLSLR-CGTLVSADSTGSVQFWDSRHGTL-LQ-----AHS----FHK 294 (817)
Q Consensus 240 -~~~~~-~~~~------------~~~~~~~v~~v~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~-----~~~----~h~ 294 (817)
++... ..+. ...-...+.+++..| .|.|+.|+. +.+.+|.+..... .. .+. .|.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 12110 0000 001222344444444 346666664 4688887764332 11 010 111
Q ss_pred --cCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 295 --GDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 295 --~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
-....+++. +.++|..+. -.++++.+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEecC-CEEEEEEEe
Confidence 123445554 557777644 467777653
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=13 Score=38.85 Aligned_cols=88 Identities=9% Similarity=0.114 Sum_probs=55.8
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEc----------cCCcee---eeeccCcccccccCCCCCCceeEEEEccCC---
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDV----------SSSELL---HTFTPCREEHDREIQPSEPPITKMFTSSDG--- 605 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--- 605 (817)
.|..+..++.|..++..+.+| |.|..+ ++|+.. +++.-..+.. .....-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G-i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f---tss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG-LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF---TSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEecCCCceEEEecCCe-eEEEEchhhcCccceecCCCceEEEEeecccceee---ccCCceeeeeccccCCccCC
Confidence 577888899999999999999 444444 233221 1111100000 00122345678899986
Q ss_pred CEEEEEeCCCcEEEEECCCcceEEEEec
Q 003467 606 QWLAAVNCFGDVYIFNLEIQRQHWFISR 633 (817)
Q Consensus 606 ~~la~~~~dg~i~vwd~~~~~~~~~~~~ 633 (817)
..|..-..|..|+|||+......+..+.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCC
Confidence 5788888999999999987776655543
No 484
>PRK13615 lipoprotein LpqB; Provisional
Probab=85.80 E-value=37 Score=37.21 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=91.4
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 543 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 543 i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
..+++.|+|+..+|....++.++++... +.....+. ...++.-.|.++| ++=++......++...
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~-------------~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~ 400 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT-------------RPGLVAPSLDAQG-YVWSTPASDPRGLVAW 400 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc-------------CCccccCcCcCCC-CEEEEeCCCceEEEEe
Confidence 3688999999999988878878877655 22222222 2346666787777 5545444333454443
Q ss_pred CC-cceE-EEEecCCCCCeEEEEecCCCCCeEEEEec---CCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEE
Q 003467 623 EI-QRQH-WFISRLEGASVTAAGFPPQNNNVLIITTS---SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLS 697 (817)
Q Consensus 623 ~~-~~~~-~~~~~~~~~~i~~l~~sp~d~~~l~~~~~---d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~ 697 (817)
.. +... ...+-..+..|+.+..|+ ||..++.... .++|++--+....-.+ .... .-+..+..-.+.+.++.
T Consensus 401 ~~~G~~~~v~v~~~~~~~I~~lrvSr-DG~R~Avi~~~~g~~~V~va~V~R~~~~P--~~L~-~~p~~l~~~l~~v~sl~ 476 (557)
T PRK13615 401 GPDGVGHPVAVSWTATGRVVSLEVAR-DGARVLVQLETGAGPQLLVASIVRDGGVP--TSLT-TTPLELLASPGTPLDAT 476 (557)
T ss_pred cCCCceEEeeccccCCCeeEEEEeCC-CccEEEEEEecCCCCEEEEEEEEeCCCcc--eEee-eccEEcccCcCcceeeE
Confidence 22 2221 122222346899999999 9988877643 3567776665411000 0000 11333333334899999
Q ss_pred ECCCCCCCEEEEEcC-----ceEEEEEcCCCC
Q 003467 698 FSPSPSSSSVIIYSA-----RAMCVIDFGRPV 724 (817)
Q Consensus 698 f~p~~~~~~~~~~~~-----~~~~~~d~~~~~ 724 (817)
|..++ .+.+.+. .....+.+..|.
T Consensus 477 W~~~~---~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 477 WVDEL---DVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred EcCCC---EEEEEeccCCCCceEEEEECCCcc
Confidence 99863 3545442 446666666543
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.27 E-value=30 Score=34.16 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe------CCCcEEEEECCCcceEEEEecC
Q 003467 561 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN------CFGDVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 561 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~------~dg~i~vwd~~~~~~~~~~~~~ 634 (817)
-..|++||..+.+-..--.+ -.+.|++|.|..+.+.++.|. ....+..||+++.... .+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-----------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~ 82 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-----------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGG 82 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-----------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCc
Confidence 34599999876655443333 567899999987777888775 3556889999887642 23331
Q ss_pred C----CCCeEEEEecCCCCCeEE-EEe-cCCeEEEEEcCCC
Q 003467 635 E----GASVTAAGFPPQNNNVLI-ITT-SSNQVYVFDVEAK 669 (817)
Q Consensus 635 ~----~~~i~~l~~sp~d~~~l~-~~~-~d~~i~vwd~~~~ 669 (817)
. .++|+++.+...|...+. .|. .++.-++...+..
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 1 258888888654554444 333 4454444444444
No 486
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.96 E-value=3.6 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=22.3
Q ss_pred eccCCCceEEEEECCCCCeEEEEec-C--CcEEEE
Q 003467 9 IDWKPSPVVALATSADDSQVAAARE-D--GSLEIW 40 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~-d--g~i~iw 40 (817)
+.-.+..-.+.+|||||++|+..+. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4455677889999999999997754 3 556565
No 487
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.83 E-value=20 Score=37.52 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=81.4
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
.++....+.--|++.|+.+.....|... -+.|.|+......
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qm------------------------------------- 525 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQM------------------------------------- 525 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhc-------------------------------------
Confidence 3555567778888999988888766554 5778887643211
Q ss_pred cccccccCCEEEEEeCCCcEEEEEec-CCCceeEeeccCC-ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
...+.|+--+ +..|.-.|.. .+..+.....-.- .+....|.+-. ...++|.++..|.|++||--.-+....
T Consensus 526 -----t~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKta 598 (776)
T COG5167 526 -----TDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTA 598 (776)
T ss_pred -----CccceEEeec-ccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhc
Confidence 0112444444 4444444544 3333322111110 11122222222 345999999999999999543333333
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR 282 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~ 282 (817)
+. +....|-.+..+.+|..+.+.....+.+-|+.
T Consensus 599 lP--------~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 599 LP--------GLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred Cc--------ccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 33 45667888888889954333334456666654
No 488
>PRK13613 lipoprotein LpqB; Provisional
Probab=84.75 E-value=72 Score=35.60 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=55.3
Q ss_pred ceEEEEECCCCCeEEEEecCC-cEEEEecCCCCC-CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC--CC--
Q 003467 15 PVVALATSADDSQVAAAREDG-SLEIWLVSPGTS-GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI--DG-- 88 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg-~i~iwd~~~~~~-~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~--d~-- 88 (817)
.+.+++.|+++..+|.-..++ .+.+..+..+.. ..+....+.+ ..++.-.|.++|. +=+... ++
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~---~~Lt~PS~d~~g~-------vWtvd~~~~~~~ 433 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTAD---GRLTSPSWDGRGD-------LWVVDRDPADPR 433 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeecc---CcccCCcCcCCCC-------EEEecCCCCCce
Confidence 688999999999988776655 455544433221 0001122332 3577777887763 444322 12
Q ss_pred eEEEEECCCCeEEEEEe--ecC-ceEEEEeeecCCCccc
Q 003467 89 SVSEWDLYDLKQKIVLQ--SID-FSIWQMAVAPSNSSLM 124 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~--~~~-~~i~~~~~s~~~~~~~ 124 (817)
.+++..- +|+... +. ... ..|..+..|+||.+.+
T Consensus 434 vl~v~~~-~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvA 470 (599)
T PRK13613 434 LLWLLQG-DGEPVE-VRTPELDGHRVVAVRVARDGVRVA 470 (599)
T ss_pred EEEEEcC-CCcEEE-eeccccCCCEeEEEEECCCccEEE
Confidence 2555542 444421 21 222 3899999999996543
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=10 Score=44.53 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred EeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc--------cCCCEEEEeeCCCcEEEEECCCCceE-------EE
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS--------ADGNMLYSGSSDGYIRSWDAKLGYEI-------YR 240 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--------~dg~~l~s~~~dg~i~vwd~~~g~~~-------~~ 240 (817)
.+.|+.+.+|++++++.+ ..+.+-...|..|..- |.=++|+....--.|.++-+.-.+.. ..
T Consensus 95 iTiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EEeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 356789999999987777 5566666667776642 23345554444446666644321111 11
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC----C---Ce-E----------------EEEee-cCcc
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR----H---GT-L----------------LQAHS-FHKG 295 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~----~---~~-~----------------~~~~~-~h~~ 295 (817)
+... .....|.++....+|++.-++.||. +|.+. . ++ + +-.+. .+..
T Consensus 172 ~~i~------~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 172 FKIS------VDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred eeee------cCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 2456788999889998888888884 44331 1 11 1 11123 5677
Q ss_pred CeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 296 DVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 296 ~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+|..+++...-+.+++-+..|+|.+|++....
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 99999999888889999999999999998743
No 490
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.20 E-value=52 Score=33.58 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=44.6
Q ss_pred CCCEEEEeeCC-----CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC-----CCcEEEEeCCC
Q 003467 214 DGNMLYSGSSD-----GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS-----TGSVQFWDSRH 283 (817)
Q Consensus 214 dg~~l~s~~~d-----g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~-----dg~i~iwd~~~ 283 (817)
++...+.|+.+ ..+..+|+.+.+....... .... .....-.+++...+..++.|+. ...+..||..+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~-~~~l--p~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICET-IGNL--PFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeE-cCCC--CcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 45666777654 3566777766553111110 0000 0111111223333335566653 23578888886
Q ss_pred CeEEEE--eecCccCeeEEEEecCCCEEEEEccCC
Q 003467 284 GTLLQA--HSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 284 ~~~~~~--~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.+-... +.. .......+...+++..+.||.++
T Consensus 149 ~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~ 182 (323)
T TIGR03548 149 QEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSN 182 (323)
T ss_pred CCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCC
Confidence 554322 211 11222233334566666677654
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.52 E-value=7.3 Score=43.40 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCCCeEEEEecCCcEEEEecCC---CCCCcEEEEEEcCC--------------------CCCcEEEEEEee----cCCCC
Q 003467 23 ADDSQVAAAREDGSLEIWLVSP---GTSGWHCQLTVHGD--------------------PKSRISSLVWCH----AGKMG 75 (817)
Q Consensus 23 pdg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~g~--------------------~~~~V~~l~~s~----~~~~~ 75 (817)
++...|+++..||.+....... ....|. ...... ....+.+++++. +..+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWS--EELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF- 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE------STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE-
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeE--EEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE-
Confidence 5777899999999988877664 111221 111111 123456667766 4444
Q ss_pred CCCceEEEeeCCCeEEEEECCCCeEEEEEeec
Q 003467 76 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSI 107 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 107 (817)
|++.+.|+++++||+.++.++.+..-.
T Consensus 233 -----l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 233 -----LFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -----EEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred -----EEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999999998887644
No 492
>PLN02193 nitrile-specifier protein
Probab=83.52 E-value=72 Score=34.66 Aligned_cols=67 Identities=10% Similarity=-0.052 Sum_probs=34.3
Q ss_pred CEEEEEeCC----CcEEEEEecCCCceeEeeccC-CccceEEEEEEccCCCEEEEeeCC--------------CcEEEEE
Q 003467 171 RRVALACDD----GCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSD--------------GYIRSWD 231 (817)
Q Consensus 171 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~d--------------g~i~vwd 231 (817)
+.++.++.+ ..+.+||+.+.... ...... ....+..+.+..-++++++.|+.+ ..+.++|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 456666544 45888998755432 222110 011111111222356777787753 2478888
Q ss_pred CCCCceE
Q 003467 232 AKLGYEI 238 (817)
Q Consensus 232 ~~~g~~~ 238 (817)
..+.+-.
T Consensus 409 ~~t~~W~ 415 (470)
T PLN02193 409 TETLQWE 415 (470)
T ss_pred cCcCEEE
Confidence 8776543
No 493
>PRK13613 lipoprotein LpqB; Provisional
Probab=83.41 E-value=48 Score=36.94 Aligned_cols=159 Identities=12% Similarity=0.076 Sum_probs=89.6
Q ss_pred ceeEEEEecCCCEEEEEecCC-cEEEEEccCCce----eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC--C
Q 003467 542 FAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSEL----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--F 614 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg-~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~--d 614 (817)
.+.+++.|+++..+|....++ .+++..+..+.. ..... .....+.-.|.++| ++-+++. +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~------------~~~~Lt~PS~d~~g-~vWtvd~~~~ 430 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT------------ADGRLTSPSWDGRG-DLWVVDRDPA 430 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee------------ccCcccCCcCcCCC-CEEEecCCCC
Confidence 577899999999998887665 455555432322 11111 13346666777777 4444432 2
Q ss_pred C--cEEEEECCCcceE-EEEecCCCCCeEEEEecCCCCCeEEEEec---CCeEEEEEcCCCccccchhcccCccCcchhc
Q 003467 615 G--DVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNNVLIITTS---SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE 688 (817)
Q Consensus 615 g--~i~vwd~~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~l~~~~~---d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~ 688 (817)
+ .+++..- +++.. ...+-..+..|+.+..|+ ||-.+|.... .++|+|=-+....-+. .... -+..+..
T Consensus 431 ~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSr-DG~RvAvv~~~~g~~~v~va~V~R~~~G~--~~l~--~~~~l~~ 504 (599)
T PRK13613 431 DPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVAR-DGVRVALIVEKDGRRSLQIGRIVRDAKAV--VSVE--EFRSLAP 504 (599)
T ss_pred CceEEEEEcC-CCcEEEeeccccCCCEeEEEEECC-CccEEEEEEecCCCcEEEEEEEEeCCCCc--EEee--ccEEecc
Confidence 2 2555553 33332 112222334899999999 9988877654 3577777775543322 1111 1333333
Q ss_pred CCCceeEEEECCCCCCCEEEEEc-----CceEEEEEcCC
Q 003467 689 FPGEVIGLSFSPSPSSSSVIIYS-----ARAMCVIDFGR 722 (817)
Q Consensus 689 ~~~~v~~l~f~p~~~~~~~~~~~-----~~~~~~~d~~~ 722 (817)
-...+.+++|..+ ..+++.+ ...+..+.+..
T Consensus 505 ~l~~v~~~~W~~~---~sL~Vlg~~~~~~~~v~~v~vdG 540 (599)
T PRK13613 505 ELEDVTDMSWAGD---SQLVVLGREEGGVQQARYVQVDG 540 (599)
T ss_pred CCCccceeEEcCC---CEEEEEeccCCCCcceEEEecCC
Confidence 3345999999986 3355543 24455566554
No 494
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.12 E-value=58 Score=33.26 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=33.5
Q ss_pred CEEEEEeC-----CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC----cEEEEECCCCce
Q 003467 171 RRVALACD-----DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG----YIRSWDAKLGYE 237 (817)
Q Consensus 171 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg----~i~vwd~~~g~~ 237 (817)
...+.|+. ...+..||+.+..-. ....+... .+....+..-+++..+.|+.++ .+.+||..+.+-
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 45555553 235778888754432 22222211 1222222334567777777653 356788876553
No 495
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.52 E-value=1.1e+02 Score=36.17 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEee-cCceEEEEeeecCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSS 122 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~ 122 (817)
+++-+..|.|.+++++.......+.. +...+.++...++-+.
T Consensus 639 v~v~~~~g~i~~~~l~~~s~rl~~~~~~s~~~~sv~~~~dlsg 681 (1366)
T KOG1896|consen 639 VAVRSSEGRITLYDLEEKSHRLALHDPMSFKVVSVSLPADLSG 681 (1366)
T ss_pred EEEEEcCCceEEEEeccccchhhccCcccceeEEEechhhhcc
Confidence 88888888899999876532222222 3566777777776543
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.19 E-value=8.7 Score=37.79 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe------cCCeEEEEEcCCCccccchhcccCccCcch-
Q 003467 614 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQLGEWSMQHTFVLPRRY- 686 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~------~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~- 686 (817)
...|++||.++.+....-... .+.|++|.|.. +.++++.|. ....+..||+++...+. - ....
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~---~-----~~~~s 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS---L-----GGGSS 84 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc-eEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeee---c-----CCccc
Confidence 446999999887754332222 26899999986 666666653 34478899998886422 1 1111
Q ss_pred hcCCCceeEEEECCCCCCCEEE-----EEcCceEEEEEcCC
Q 003467 687 QEFPGEVIGLSFSPSPSSSSVI-----IYSARAMCVIDFGR 722 (817)
Q Consensus 687 ~~~~~~v~~l~f~p~~~~~~~~-----~~~~~~~~~~d~~~ 722 (817)
..-+++|..+.+..+ +...++ ..++..+..+|=.+
T Consensus 85 ~~ipgpv~a~~~~~~-d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 85 NSIPGPVTALTFISN-DGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred ccCCCcEEEEEeecc-CCceEEEeceecCCCceEEEEcCCc
Confidence 233578888888664 456677 45555566666443
No 497
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.17 E-value=59 Score=32.73 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred EecCCCEEEEEecCCcEEEEEccC--CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCc-EEEEECCC
Q 003467 548 FSYDSSQLIIAGHDRRIYVVDVSS--SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEI 624 (817)
Q Consensus 548 fspd~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~-i~vwd~~~ 624 (817)
+.-++++|+.|+++| +++.++.. .+..+.+. ...|+++...+.-+.|++-+.... ++++++..
T Consensus 9 ~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~-------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 9 ITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLIG-------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred cccCCcEEEEEeCCc-eEEEEcccCCCCeEEecC-------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Q ss_pred cce----------------EEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcc---
Q 003467 625 QRQ----------------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR--- 685 (817)
Q Consensus 625 ~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~--- 685 (817)
... ...+....+....++.-.+ ...++++....+|.+|...... +.+..++.
T Consensus 75 L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~--~~~~l~~A~~~~i~l~~~~~~~-------~~f~~~k~~~~ 145 (302)
T smart00036 75 LVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGK--RSLFLCVALQSSVVLLQWYNPL-------KKFKLFKSKFL 145 (302)
T ss_pred hhhhhhccCCccccccccceEeCCcCCceEEEEEEcCC--CcEEEEEEcCCeEEEEEccChh-------hhhhhhccccc
Q ss_pred -hhcCCCceeEEEECCCCCCCEEEEEcCc-eEEEEEcCCCCCCCCcCccccCCchhhhhhccCCcccccccccccccccc
Q 003467 686 -YQEFPGEVIGLSFSPSPSSSSVIIYSAR-AMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTES 763 (817)
Q Consensus 686 -~~~~~~~v~~l~f~p~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (817)
..--+.++..+..+++-....+++-... ...++++...+....+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d---------------------------------- 191 (302)
T smart00036 146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED---------------------------------- 191 (302)
T ss_pred ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc----------------------------------
Q ss_pred cccccCcceEEEeeccceEEeeccCCCeEEEE
Q 003467 764 NKLHGRKNFEFFAFRDPVLFIGHLSKSSMLII 795 (817)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lv~v 795 (817)
....|........-+.+.-++++|++++
T Consensus 192 ----~sl~~~~~~~~~~p~~i~~l~~~e~Llc 219 (302)
T smart00036 192 ----LSLPFLSEETSLKPISVVQVPRDEFLLC 219 (302)
T ss_pred ----ccccccccccccCceEEEEECCCeEEEE
No 498
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.94 E-value=74 Score=39.11 Aligned_cols=289 Identities=15% Similarity=0.192 Sum_probs=142.7
Q ss_pred CceEEEEECCCCCe-EEEEecCCcEEEEecCCCCC----CcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 14 SPVVALATSADDSQ-VAAAREDGSLEIWLVSPGTS----GWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 14 ~~I~~la~spdg~~-la~~~~dg~i~iwd~~~~~~----~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
..|.+..++++|+. +.++-....+.+|++....- .....+.+.++ .....+|.++++ |||.+..+|
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG-~a~A~~VgLs~d--------rLFvADseG 508 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG-KAQAQSVGLSND--------RLFVADSEG 508 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCC-chhhhheeecCC--------eEEEEeCCC
Confidence 46777888899987 44555555679999875421 11234455555 347778888775 388888888
Q ss_pred eEEEEECCCCe---EE------EE---Ee---ecCceEEEEeeecCCCccceeecc--CccccCccccCCC------CCC
Q 003467 89 SVSEWDLYDLK---QK------IV---LQ---SIDFSIWQMAVAPSNSSLMHAVTN--SDHIGNGYLNDKS------NDS 145 (817)
Q Consensus 89 ~i~vwd~~~~~---~~------~~---~~---~~~~~i~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~ 145 (817)
.++.=++...+ .. .. +. ++...|... ..+....+.+..+ ....-..-|+... +..
T Consensus 509 kLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF--~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNL 586 (1774)
T PF11725_consen 509 KLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGF--ISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNL 586 (1774)
T ss_pred CEEecccccccCCCcceEeccccccccccccccccceeecc--ccCCCCeeeEEEeccCCceeeccccccCCccCCCCcc
Confidence 87776654211 00 00 00 111222211 1111111111000 0001111111000 000
Q ss_pred CCccccccCCCCCCc--cccccccccCCEEEEEeCCCcEEEEEecCCCcee--------EeeccCC-----ccceEEEEE
Q 003467 146 DDHETSESENDSDSD--ELHEQSVVEDRRVALACDDGCVRIYRITDSDELI--------YHRSLPR-----VSGRVLSVT 210 (817)
Q Consensus 146 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~-----h~~~v~~v~ 210 (817)
......-...|-... +.......-++.=.+|-.||.|.-||-.+...-. +.+-+.+ ..+.|..+.
T Consensus 587 Sd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~ 666 (1774)
T PF11725_consen 587 SDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLS 666 (1774)
T ss_pred cceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeee
Confidence 011111111110000 0000111223344456668999999986432110 0011111 245677777
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEE-E
Q 003467 211 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ-A 289 (817)
Q Consensus 211 ~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~ 289 (817)
.++.-.-++-|... .+- +...+....+-..+.+ -....|.++++..+..+++.+..|.+.... +.+..+. .
T Consensus 667 i~~~~~~~~~g~~~-~~a---~~~~r~~~e~G~~l~G---l~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~ 738 (1774)
T PF11725_consen 667 INQEHPSIAHGDNN-VFA---LPQRRNKVELGDALEG---LEDRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLS 738 (1774)
T ss_pred cccCCCccccCCCc-ccc---cccccCCCCCCccccC---CCcCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCC
Confidence 77766555554322 111 1111111111111111 135678899999888999999999999998 6666432 2
Q ss_pred eecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 290 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 290 ~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
..+-.+.|..|++..+.+ |++...+|.++.-+
T Consensus 739 ~~gl~G~ik~l~lD~~~n-L~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 739 RPGLSGEIKDLALDEKQN-LYALTSTGELFRLP 770 (1774)
T ss_pred CCCCCcchhheeeccccc-eeEecCCCceeecC
Confidence 234568999999998765 67777888776543
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.84 E-value=5.4 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=20.0
Q ss_pred CCCceeEEEEccCCCEEEEEeCC---CcEEEE
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCF---GDVYIF 620 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~d---g~i~vw 620 (817)
........+|||||++|+.++.. |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45567888999999998877643 455454
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.69 E-value=1.1e+02 Score=35.53 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=51.5
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEE----e------cCC--------CCCeEEEEecCCCCCeEE
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI----S------RLE--------GASVTAAGFPPQNNNVLI 653 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~----~------~~~--------~~~i~~l~~sp~d~~~l~ 653 (817)
....|.+++...-+.+++.+-.||+|.++|-.+.+..... . ... ..++..++||| ++..++
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLV 336 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEE
Confidence 3466888888888889999999999999998777543222 0 000 02344588999 888888
Q ss_pred EEecCCeEE
Q 003467 654 ITTSSNQVY 662 (817)
Q Consensus 654 ~~~~d~~i~ 662 (817)
....++.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888899855
Done!