Query 003467
Match_columns 817
No_of_seqs 805 out of 3563
Neff 11.2
Searched_HMMs 29240
Date Tue Mar 26 02:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.3E-64 4.5E-69 569.2 68.4 566 3-718 6-576 (577)
2 1nr0_A Actin interacting prote 100.0 1.9E-63 6.4E-68 559.6 63.3 545 11-720 16-609 (611)
3 1nr0_A Actin interacting prote 100.0 8.2E-63 2.8E-67 554.4 62.4 504 5-667 51-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.1E-59 3.7E-64 529.2 61.9 524 6-665 50-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-59 1.4E-63 572.0 57.6 559 8-720 610-1247(1249)
6 1pgu_A Actin interacting prote 100.0 1.1E-56 3.7E-61 509.5 59.8 564 10-721 15-613 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 1E-53 3.5E-58 496.7 64.2 586 9-721 13-782 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1E-54 3.4E-59 533.1 52.0 551 6-667 650-1248(1249)
9 1pgu_A Actin interacting prote 100.0 1.8E-53 6.3E-58 482.9 58.5 493 4-668 54-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-50 4E-55 471.0 55.8 532 54-722 12-732 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 4.5E-51 1.5E-55 479.0 49.3 485 1-664 1-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-46 5E-51 440.7 47.4 474 51-721 5-503 (814)
13 1vyh_C Platelet-activating fac 100.0 4.3E-44 1.5E-48 381.3 35.6 287 7-415 102-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 2.4E-43 8.2E-48 361.7 38.6 289 7-415 26-319 (321)
15 2ynn_A Coatomer subunit beta'; 100.0 6.6E-43 2.2E-47 356.3 40.1 275 1-362 1-279 (304)
16 1got_B GT-beta; complex (GTP-b 100.0 1.3E-42 4.5E-47 360.4 41.5 289 3-414 45-340 (340)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-41 9E-46 351.1 41.9 309 6-421 8-339 (345)
18 3ow8_A WD repeat-containing pr 100.0 5.2E-41 1.8E-45 344.3 40.2 297 99-623 23-320 (321)
19 1vyh_C Platelet-activating fac 100.0 2.3E-41 7.8E-46 360.3 38.0 309 101-667 101-410 (410)
20 2pbi_B Guanine nucleotide-bind 100.0 6E-41 2E-45 349.3 39.9 288 5-414 56-354 (354)
21 1got_B GT-beta; complex (GTP-b 100.0 1.5E-40 5.2E-45 344.8 41.7 292 98-621 45-340 (340)
22 4g56_B MGC81050 protein; prote 100.0 3.4E-42 1.1E-46 359.0 28.0 292 10-419 39-345 (357)
23 4gqb_B Methylosome protein 50; 100.0 2.3E-41 7.8E-46 349.2 32.5 290 10-418 27-332 (344)
24 3iz6_a 40S ribosomal protein R 100.0 2.1E-41 7.3E-46 357.0 31.9 296 5-418 58-376 (380)
25 1r5m_A SIR4-interacting protei 100.0 1.2E-40 4.1E-45 359.0 38.1 342 35-623 25-424 (425)
26 4g56_B MGC81050 protein; prote 100.0 5.6E-41 1.9E-45 349.8 31.9 316 172-670 18-345 (357)
27 4ery_A WD repeat-containing pr 100.0 8.7E-40 3E-44 335.5 40.3 290 6-416 16-311 (312)
28 2hes_X YDR267CP; beta-propelle 100.0 8.5E-40 2.9E-44 337.5 40.3 297 4-417 5-328 (330)
29 2ynn_A Coatomer subunit beta'; 100.0 9.6E-40 3.3E-44 332.9 39.5 293 196-669 6-303 (304)
30 2pbi_B Guanine nucleotide-bind 100.0 1.4E-39 4.8E-44 339.0 40.9 293 51-621 56-354 (354)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.3E-39 1.5E-43 334.5 44.1 270 50-416 6-282 (345)
32 3frx_A Guanine nucleotide-bind 100.0 1.6E-39 5.5E-44 333.6 39.7 290 7-417 11-317 (319)
33 1r5m_A SIR4-interacting protei 100.0 1.4E-39 4.9E-44 350.6 41.1 347 87-668 24-425 (425)
34 4gqb_B Methylosome protein 50; 100.0 8.3E-40 2.8E-44 337.6 36.2 300 182-671 16-334 (344)
35 1erj_A Transcriptional repress 100.0 1.8E-39 6.3E-44 343.9 38.2 297 11-417 62-389 (393)
36 3iz6_a 40S ribosomal protein R 100.0 1.2E-40 4.3E-45 351.1 28.6 325 87-626 45-377 (380)
37 3frx_A Guanine nucleotide-bind 100.0 7.4E-39 2.5E-43 328.6 39.7 300 191-669 5-318 (319)
38 2xzm_R RACK1; ribosome, transl 100.0 9.7E-39 3.3E-43 331.9 39.6 306 6-417 14-340 (343)
39 2pm9_A Protein WEB1, protein t 100.0 4.9E-41 1.7E-45 360.8 22.6 298 13-419 12-339 (416)
40 1gxr_A ESG1, transducin-like e 100.0 2.8E-38 9.6E-43 328.7 36.9 322 60-622 9-335 (337)
41 1erj_A Transcriptional repress 100.0 1.1E-37 3.7E-42 330.3 41.5 342 10-625 12-390 (393)
42 2hes_X YDR267CP; beta-propelle 100.0 4.2E-37 1.4E-41 317.3 42.9 306 96-624 2-328 (330)
43 3vl1_A 26S proteasome regulato 100.0 8.4E-38 2.9E-42 336.0 37.5 344 62-668 58-419 (420)
44 4ery_A WD repeat-containing pr 100.0 7.6E-37 2.6E-41 313.6 42.7 292 194-667 14-311 (312)
45 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-39 1.3E-43 349.0 25.1 261 5-325 125-428 (524)
46 1gxr_A ESG1, transducin-like e 100.0 1.9E-37 6.4E-42 322.5 36.0 323 11-520 7-336 (337)
47 3vl1_A 26S proteasome regulato 100.0 1.2E-38 4.1E-43 342.6 27.7 333 15-521 58-419 (420)
48 2pm9_A Protein WEB1, protein t 100.0 6.9E-39 2.4E-43 344.1 25.2 317 172-669 27-415 (416)
49 3zwl_B Eukaryotic translation 100.0 1.4E-36 4.9E-41 320.3 41.6 294 5-419 24-348 (369)
50 2xzm_R RACK1; ribosome, transl 100.0 1.9E-36 6.5E-41 314.6 41.5 301 99-573 12-342 (343)
51 4aow_A Guanine nucleotide-bind 100.0 1.8E-36 6.2E-41 315.5 40.8 302 8-419 33-339 (340)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-36 1.6E-40 324.4 44.0 277 6-417 111-391 (445)
53 1sq9_A Antiviral protein SKI8; 100.0 4.2E-37 1.4E-41 327.8 35.0 307 4-418 7-396 (397)
54 3gre_A Serine/threonine-protei 100.0 2.2E-37 7.6E-42 334.3 33.0 376 17-665 31-437 (437)
55 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-36 4.5E-41 321.0 37.9 315 8-419 3-363 (372)
56 3dm0_A Maltose-binding peripla 100.0 1.2E-36 4E-41 348.0 40.4 295 6-417 375-693 (694)
57 4aow_A Guanine nucleotide-bind 100.0 1.7E-36 5.7E-41 315.8 38.1 268 29-417 8-286 (340)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.1E-36 2.8E-40 322.5 43.0 329 52-625 111-443 (445)
59 3v7d_B Cell division control p 100.0 2.3E-35 7.8E-40 321.3 44.6 329 51-621 113-460 (464)
60 3k26_A Polycomb protein EED; W 100.0 4.4E-37 1.5E-41 323.8 30.0 311 7-416 12-365 (366)
61 3v7d_B Cell division control p 100.0 3.2E-35 1.1E-39 320.1 43.6 289 5-419 113-423 (464)
62 2j04_B YDR362CP, TAU91; beta p 100.0 1.7E-37 5.8E-42 336.2 24.5 255 60-417 133-428 (524)
63 2pm7_B Protein transport prote 100.0 6.2E-36 2.1E-40 303.6 34.0 253 7-325 3-285 (297)
64 3ei3_B DNA damage-binding prot 100.0 8.8E-36 3E-40 315.6 36.2 284 6-417 66-382 (383)
65 3i2n_A WD repeat-containing pr 100.0 2.3E-36 7.7E-41 317.2 31.0 307 7-419 12-355 (357)
66 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-35 5.3E-40 304.5 35.9 287 5-421 10-300 (313)
67 3dwl_C Actin-related protein 2 100.0 1.9E-37 6.6E-42 327.8 21.7 252 8-324 6-280 (377)
68 3ei3_B DNA damage-binding prot 100.0 2.9E-35 1E-39 311.6 36.2 210 50-327 64-284 (383)
69 3bg1_A Protein SEC13 homolog; 100.0 3.5E-36 1.2E-40 308.2 27.5 254 7-325 7-293 (316)
70 1k32_A Tricorn protease; prote 100.0 1.8E-33 6E-38 335.9 54.6 514 11-722 12-637 (1045)
71 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-37 8.8E-42 323.2 17.9 318 13-511 15-350 (588)
72 1sq9_A Antiviral protein SKI8; 100.0 4.6E-35 1.6E-39 312.0 35.6 217 51-327 8-269 (397)
73 3gre_A Serine/threonine-protei 100.0 7.8E-36 2.7E-40 322.2 28.4 261 9-327 59-361 (437)
74 4aez_A CDC20, WD repeat-contai 100.0 1.4E-34 4.7E-39 307.9 37.6 288 11-421 89-384 (401)
75 3dm0_A Maltose-binding peripla 100.0 1.5E-34 5.2E-39 330.5 40.6 294 196-668 375-693 (694)
76 4e54_B DNA damage-binding prot 100.0 1.1E-35 3.7E-40 319.8 28.9 292 9-419 115-432 (435)
77 4a11_B DNA excision repair pro 100.0 2.2E-35 7.7E-40 315.8 31.1 368 86-668 21-405 (408)
78 3zwl_B Eukaryotic translation 100.0 3.8E-34 1.3E-38 301.7 39.8 303 197-671 26-349 (369)
79 3k26_A Polycomb protein EED; W 100.0 3.7E-35 1.3E-39 309.1 31.6 216 51-327 9-262 (366)
80 4ggc_A P55CDC, cell division c 100.0 9.1E-34 3.1E-38 291.9 39.3 293 5-418 5-316 (318)
81 1p22_A F-BOX/WD-repeat protein 100.0 6.2E-34 2.1E-38 306.4 38.9 287 10-419 130-416 (435)
82 1k8k_C P40, ARP2/3 complex 41 100.0 2.5E-34 8.5E-39 303.5 34.5 311 200-670 5-363 (372)
83 4h5i_A Guanine nucleotide-exch 100.0 5.8E-35 2E-39 305.1 29.0 292 14-417 15-343 (365)
84 4gga_A P55CDC, cell division c 100.0 8.3E-34 2.8E-38 303.8 38.5 278 16-419 108-397 (420)
85 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-34 1.3E-38 299.3 34.6 261 4-327 2-339 (351)
86 3dw8_B Serine/threonine-protei 100.0 1.3E-34 4.5E-39 313.9 31.1 251 12-327 27-375 (447)
87 4e54_B DNA damage-binding prot 100.0 2E-34 7E-39 309.9 32.0 303 197-671 113-433 (435)
88 1k32_A Tricorn protease; prote 100.0 5E-33 1.7E-37 332.0 44.9 503 5-670 44-639 (1045)
89 1yfq_A Cell cycle arrest prote 100.0 1.2E-33 4.3E-38 294.2 34.0 286 5-414 3-321 (342)
90 4a11_B DNA excision repair pro 100.0 3.5E-33 1.2E-37 298.8 38.2 310 6-422 36-370 (408)
91 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-32 4.8E-37 282.4 40.4 285 50-521 9-296 (313)
92 3dwl_C Actin-related protein 2 100.0 3.9E-35 1.3E-39 310.0 21.4 246 60-416 11-280 (377)
93 4h5i_A Guanine nucleotide-exch 100.0 1.4E-33 4.7E-38 294.7 32.7 284 171-625 27-344 (365)
94 3i2n_A WD repeat-containing pr 100.0 2.4E-33 8E-38 294.1 32.9 300 197-626 12-355 (357)
95 2pm7_B Protein transport prote 100.0 1.8E-33 6.3E-38 285.4 30.3 252 54-417 4-285 (297)
96 3jrp_A Fusion protein of prote 100.0 4E-33 1.4E-37 295.1 33.6 258 6-327 4-289 (379)
97 4aez_A CDC20, WD repeat-contai 100.0 5.7E-33 2E-37 295.4 34.8 286 172-642 105-398 (401)
98 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-35 2E-39 305.5 18.5 319 202-703 14-343 (588)
99 4gga_A P55CDC, cell division c 100.0 3.5E-32 1.2E-36 291.2 39.0 284 206-670 108-397 (420)
100 3mmy_A MRNA export factor; mRN 100.0 3.2E-32 1.1E-36 286.8 32.4 290 4-415 30-344 (368)
101 3bg1_A Protein SEC13 homolog; 100.0 6.1E-33 2.1E-37 284.1 23.3 255 54-417 8-293 (316)
102 4ggc_A P55CDC, cell division c 100.0 7.6E-31 2.6E-35 270.1 39.1 283 206-669 28-316 (318)
103 3dw8_B Serine/threonine-protei 100.0 1.3E-31 4.3E-36 290.4 34.5 311 201-667 26-445 (447)
104 1yfq_A Cell cycle arrest prote 100.0 4.6E-31 1.6E-35 274.8 35.9 291 197-665 5-321 (342)
105 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-31 4.7E-36 288.1 32.3 279 171-646 144-434 (435)
106 3jrp_A Fusion protein of prote 100.0 9E-32 3.1E-36 284.6 28.4 260 51-419 3-289 (379)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.7E-31 1.9E-35 284.5 34.7 268 14-362 5-363 (450)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-32 1.3E-36 289.5 24.7 289 15-418 36-343 (402)
109 3mmy_A MRNA export factor; mRN 100.0 3.4E-31 1.1E-35 279.0 29.0 320 91-622 22-344 (368)
110 3vu4_A KMHSV2; beta-propeller 100.0 3E-30 1E-34 268.7 35.3 235 9-327 15-273 (355)
111 2xyi_A Probable histone-bindin 100.0 4.5E-31 1.6E-35 283.1 27.4 257 7-327 122-412 (430)
112 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-30 4.2E-35 272.5 29.6 277 53-419 5-339 (351)
113 3jro_A Fusion protein of prote 100.0 1.9E-31 6.5E-36 306.1 24.5 257 7-327 3-287 (753)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-30 4.9E-35 277.2 25.6 252 7-327 75-344 (402)
115 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-29 4E-34 264.2 31.4 307 184-670 3-338 (355)
116 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4E-33 265.8 39.6 311 175-668 94-432 (433)
117 2xyi_A Probable histone-bindin 100.0 1.4E-29 4.7E-34 271.6 29.8 266 54-418 123-411 (430)
118 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-30 8.5E-35 268.6 22.5 235 16-327 39-294 (343)
119 3jro_A Fusion protein of prote 100.0 1.6E-29 5.5E-34 290.1 29.0 258 53-419 3-287 (753)
120 1l0q_A Surface layer protein; 100.0 5.6E-28 1.9E-32 256.5 38.6 268 26-421 3-279 (391)
121 3bws_A Protein LP49; two-domai 100.0 1.3E-28 4.6E-33 265.3 34.2 278 14-417 123-432 (433)
122 4gq1_A NUP37; propeller, trans 100.0 8.4E-30 2.9E-34 269.3 22.0 248 13-325 89-389 (393)
123 4gq1_A NUP37; propeller, trans 100.0 1.1E-29 3.8E-34 268.4 22.8 312 11-418 16-390 (393)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-28 8.2E-33 264.0 32.4 145 171-327 115-273 (450)
125 1l0q_A Surface layer protein; 100.0 4.7E-27 1.6E-31 249.4 39.9 309 172-671 4-345 (391)
126 2w18_A PALB2, fancn, partner a 100.0 7.2E-28 2.5E-32 236.2 30.6 263 16-323 42-355 (356)
127 3lrv_A PRE-mRNA-splicing facto 100.0 7.7E-28 2.6E-32 249.8 30.9 278 206-670 39-335 (343)
128 1nir_A Nitrite reductase; hemo 100.0 5.5E-27 1.9E-31 256.3 36.3 285 20-418 144-459 (543)
129 1nir_A Nitrite reductase; hemo 100.0 2.4E-26 8.1E-31 251.3 36.6 324 210-671 144-517 (543)
130 2w18_A PALB2, fancn, partner a 100.0 1.9E-26 6.4E-31 226.2 30.5 286 63-415 42-355 (356)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.6E-26 1.9E-30 241.2 27.5 302 203-701 62-408 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.7E-25 2E-29 233.4 32.1 212 61-327 63-302 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-25 1.8E-29 254.5 33.0 241 12-324 35-366 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-24 5E-29 250.8 33.9 198 60-327 36-323 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 8.2E-24 2.8E-28 243.9 29.5 230 15-327 18-291 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 3.8E-23 1.3E-27 237.4 30.5 237 12-324 24-341 (706)
137 1xfd_A DIP, dipeptidyl aminope 99.9 5.6E-23 1.9E-27 236.9 29.9 375 61-628 17-447 (723)
138 3u4y_A Uncharacterized protein 99.9 1.9E-21 6.6E-26 200.8 35.7 280 261-671 5-307 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.5E-22 1.5E-26 228.4 34.2 359 206-670 28-437 (706)
140 3u4y_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 201.0 32.0 238 19-327 3-254 (331)
141 3vgz_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 203.1 32.2 262 13-362 40-322 (353)
142 1ri6_A Putative isomerase YBHE 99.9 4.9E-21 1.7E-25 198.9 35.0 304 216-650 5-335 (343)
143 1ri6_A Putative isomerase YBHE 99.9 7.5E-21 2.6E-25 197.5 34.9 253 11-325 35-308 (343)
144 1pby_B Quinohemoprotein amine 99.9 4.4E-21 1.5E-25 198.7 31.7 176 80-317 3-196 (337)
145 3vgz_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 193.6 37.3 274 203-659 40-335 (353)
146 2ojh_A Uncharacterized protein 99.9 4.9E-22 1.7E-26 201.7 22.7 236 7-316 35-293 (297)
147 2ojh_A Uncharacterized protein 99.9 2.1E-21 7E-26 197.1 23.1 247 30-375 17-284 (297)
148 3o4h_A Acylamino-acid-releasin 99.9 1.2E-21 4.1E-26 219.1 23.1 233 12-323 20-274 (582)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-20 3.8E-25 200.8 27.9 250 12-324 35-332 (434)
150 3hfq_A Uncharacterized protein 99.9 3.8E-19 1.3E-23 184.7 36.4 279 224-628 15-323 (347)
151 3hfq_A Uncharacterized protein 99.9 7.8E-20 2.7E-24 190.0 30.5 255 11-325 37-317 (347)
152 1z68_A Fibroblast activation p 99.9 5.4E-21 1.8E-25 219.9 22.9 332 65-580 20-452 (719)
153 1pby_B Quinohemoprotein amine 99.9 1E-20 3.6E-25 195.9 22.3 268 26-421 2-314 (337)
154 4a5s_A Dipeptidyl peptidase 4 99.9 3.9E-19 1.3E-23 204.0 36.8 233 15-327 18-296 (740)
155 1jmx_B Amine dehydrogenase; ox 99.9 4.6E-20 1.6E-24 192.1 25.4 288 17-421 3-329 (349)
156 1jmx_B Amine dehydrogenase; ox 99.9 4.9E-19 1.7E-23 184.3 31.1 299 208-634 4-335 (349)
157 1z68_A Fibroblast activation p 99.8 3.4E-20 1.2E-24 213.2 22.9 328 172-631 28-450 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-18 3.5E-23 185.7 32.5 202 60-327 36-280 (434)
159 4a5s_A Dipeptidyl peptidase 4 99.8 3.2E-19 1.1E-23 204.8 29.2 383 61-671 17-452 (740)
160 3scy_A Hypothetical bacterial 99.8 3.5E-18 1.2E-22 178.6 34.4 252 12-325 48-337 (361)
161 3scy_A Hypothetical bacterial 99.8 2.3E-17 7.9E-22 172.3 38.5 304 272-645 25-360 (361)
162 3pe7_A Oligogalacturonate lyas 99.8 6.4E-19 2.2E-23 186.4 24.0 272 5-327 22-331 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-18 5.4E-23 181.0 26.2 252 14-326 40-342 (365)
164 3o4h_A Acylamino-acid-releasin 99.8 1E-18 3.4E-23 195.3 26.3 268 60-464 21-313 (582)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.8E-17 1.6E-21 169.8 30.5 282 27-417 4-341 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 2.4E-16 8.2E-21 163.3 34.5 146 171-325 16-182 (361)
167 3fvz_A Peptidyl-glycine alpha- 99.8 1E-16 3.5E-21 164.4 28.8 243 13-326 23-323 (329)
168 3pe7_A Oligogalacturonate lyas 99.8 8.6E-17 2.9E-21 169.9 27.5 216 38-327 13-275 (388)
169 2oiz_A Aromatic amine dehydrog 99.8 4.9E-16 1.7E-20 160.9 31.5 296 272-703 29-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.7 2.1E-17 7.3E-22 175.2 18.0 256 16-327 38-331 (396)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-14 4.2E-19 157.9 39.8 320 213-671 165-541 (567)
172 3c5m_A Oligogalacturonate lyas 99.7 1.3E-16 4.4E-21 169.2 23.6 314 185-671 15-387 (396)
173 3azo_A Aminopeptidase; POP fam 99.7 2.4E-16 8.1E-21 179.3 27.1 264 9-359 19-341 (662)
174 3azo_A Aminopeptidase; POP fam 99.7 5.5E-16 1.9E-20 176.3 27.5 202 55-324 19-271 (662)
175 1qks_A Cytochrome CD1 nitrite 99.7 6.9E-14 2.3E-18 152.0 41.5 233 23-326 165-422 (567)
176 1q7f_A NHL, brain tumor CG1071 99.7 6E-15 2.1E-19 148.2 30.7 243 11-326 27-281 (286)
177 2gop_A Trilobed protease; beta 99.7 4.1E-15 1.4E-19 154.2 26.9 265 14-362 15-310 (347)
178 4a2l_A BT_4663, two-component 99.7 5.1E-11 1.7E-15 137.8 62.7 528 14-721 43-613 (795)
179 4a2l_A BT_4663, two-component 99.7 4.2E-11 1.4E-15 138.5 61.3 544 14-722 88-659 (795)
180 3e5z_A Putative gluconolactona 99.7 1.2E-14 4.1E-19 146.8 26.4 242 5-326 19-287 (296)
181 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-14 5.1E-19 148.2 26.9 248 60-417 23-322 (329)
182 2xdw_A Prolyl endopeptidase; a 99.7 5.3E-15 1.8E-19 168.9 25.6 243 12-327 123-416 (710)
183 2dg1_A DRP35, lactonase; beta 99.7 2.2E-14 7.4E-19 147.8 26.9 236 14-324 6-262 (333)
184 2gop_A Trilobed protease; beta 99.7 1.2E-14 4.1E-19 150.8 24.0 223 14-324 59-330 (347)
185 2dg1_A DRP35, lactonase; beta 99.6 1.9E-13 6.4E-18 140.7 32.0 241 9-316 40-301 (333)
186 3sjl_D Methylamine dehydrogena 99.6 1E-13 3.4E-18 140.5 28.2 299 209-646 38-383 (386)
187 1q7f_A NHL, brain tumor CG1071 99.6 2.8E-13 9.7E-18 135.9 31.1 236 60-417 29-280 (286)
188 2xdw_A Prolyl endopeptidase; a 99.6 7.9E-14 2.7E-18 159.2 30.1 255 23-362 81-388 (710)
189 2z2n_A Virginiamycin B lyase; 99.6 2.2E-12 7.5E-17 130.4 37.6 240 10-323 11-253 (299)
190 3v9f_A Two-component system se 99.6 6.1E-10 2.1E-14 128.5 62.4 548 14-722 66-656 (781)
191 3no2_A Uncharacterized protein 99.6 1.3E-13 4.3E-18 136.3 26.3 216 23-312 3-230 (276)
192 2bkl_A Prolyl endopeptidase; m 99.6 6.8E-15 2.3E-19 167.4 17.8 244 11-327 118-399 (695)
193 1rwi_B Serine/threonine-protei 99.6 1E-13 3.5E-18 137.9 24.1 239 15-327 25-266 (270)
194 2bkl_A Prolyl endopeptidase; m 99.6 5.7E-14 1.9E-18 159.9 24.6 232 22-324 76-348 (695)
195 2z2n_A Virginiamycin B lyase; 99.6 1.2E-11 4E-16 125.0 38.9 283 201-670 12-297 (299)
196 3dsm_A Uncharacterized protein 99.6 1.6E-12 5.6E-17 132.7 31.6 267 178-580 15-310 (328)
197 3v9f_A Two-component system se 99.6 2.3E-09 8E-14 123.6 61.6 555 14-721 19-610 (781)
198 3e5z_A Putative gluconolactona 99.6 5.9E-13 2E-17 134.3 26.5 214 60-362 27-264 (296)
199 2mad_H Methylamine dehydrogena 99.6 1.9E-11 6.4E-16 126.3 36.2 286 210-631 27-357 (373)
200 3dsm_A Uncharacterized protein 99.6 1.5E-12 5.3E-17 132.9 27.4 219 33-327 15-255 (328)
201 2qc5_A Streptogramin B lactona 99.5 4.3E-11 1.5E-15 120.9 36.8 238 12-323 18-258 (300)
202 3no2_A Uncharacterized protein 99.5 3.2E-12 1.1E-16 126.2 27.4 241 170-535 5-263 (276)
203 1yr2_A Prolyl oligopeptidase; 99.5 3.4E-13 1.2E-17 154.5 22.1 240 14-327 163-443 (741)
204 3c75_H MADH, methylamine dehyd 99.5 9.1E-12 3.1E-16 128.8 29.0 282 213-631 82-409 (426)
205 3sjl_D Methylamine dehydrogena 99.5 6.2E-12 2.1E-16 127.4 26.9 284 18-424 37-370 (386)
206 1rwi_B Serine/threonine-protei 99.5 2E-12 6.9E-17 128.4 23.2 239 62-419 25-266 (270)
207 1yr2_A Prolyl oligopeptidase; 99.5 3.3E-12 1.1E-16 146.3 28.0 247 22-324 115-392 (741)
208 2mad_H Methylamine dehydrogena 99.5 9.4E-11 3.2E-15 121.1 35.7 279 19-421 26-354 (373)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.1E-12 2.4E-16 127.6 26.3 244 10-325 14-299 (314)
210 3g4e_A Regucalcin; six bladed 99.5 1.1E-10 3.8E-15 117.3 32.7 236 8-315 7-262 (297)
211 2qc5_A Streptogramin B lactona 99.4 5.8E-10 2E-14 112.5 36.8 114 202-324 18-133 (300)
212 3q7m_A Lipoprotein YFGL, BAMB; 99.4 3.8E-10 1.3E-14 118.0 35.1 321 214-665 52-375 (376)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 6.4E-11 2.2E-15 120.5 27.6 241 60-417 17-299 (314)
214 3c75_H MADH, methylamine dehyd 99.4 1.7E-10 5.9E-15 119.3 30.5 273 274-671 99-405 (426)
215 3hrp_A Uncharacterized protein 99.4 6E-11 2E-15 124.5 26.8 243 14-323 131-408 (409)
216 1xip_A Nucleoporin NUP159; bet 99.4 8.1E-12 2.8E-16 127.2 18.7 182 14-269 38-229 (388)
217 1yiq_A Quinohemoprotein alcoho 99.4 5E-11 1.7E-15 133.8 26.9 394 170-655 70-536 (689)
218 1kb0_A Quinohemoprotein alcoho 99.4 6.9E-11 2.4E-15 132.4 27.3 142 170-316 77-264 (677)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 3.4E-10 1.2E-14 115.3 29.8 228 13-315 48-292 (326)
220 3dr2_A Exported gluconolactona 99.4 1.1E-10 3.7E-15 117.9 24.9 232 8-316 39-298 (305)
221 3iuj_A Prolyl endopeptidase; h 99.4 1.5E-11 5E-16 139.5 19.4 240 11-327 126-407 (693)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.6E-09 1.2E-13 110.6 34.5 237 24-327 52-298 (376)
223 1xip_A Nucleoporin NUP159; bet 99.3 2E-11 6.7E-16 124.4 15.8 171 61-311 38-230 (388)
224 1mda_H Methylamine dehydrogena 99.3 2.9E-10 9.9E-15 115.7 22.8 284 267-646 35-366 (368)
225 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 114.8 27.9 203 61-327 131-356 (409)
226 2qe8_A Uncharacterized protein 99.3 5.8E-10 2E-14 114.6 24.7 276 204-620 17-317 (343)
227 1kb0_A Quinohemoprotein alcoho 99.3 4.3E-09 1.5E-13 117.9 32.0 315 264-671 77-510 (677)
228 3hxj_A Pyrrolo-quinoline quino 99.2 6.1E-10 2.1E-14 114.1 22.6 173 81-327 33-205 (330)
229 1yiq_A Quinohemoprotein alcoho 99.2 2.7E-09 9.3E-14 119.7 29.5 210 25-290 70-345 (689)
230 3g4e_A Regucalcin; six bladed 99.2 7.1E-09 2.4E-13 104.0 29.5 218 60-362 12-249 (297)
231 2qe8_A Uncharacterized protein 99.2 8.4E-10 2.9E-14 113.4 22.6 233 14-318 17-314 (343)
232 3iuj_A Prolyl endopeptidase; h 99.2 1E-09 3.5E-14 124.4 24.7 198 60-326 128-360 (693)
233 3hxj_A Pyrrolo-quinoline quino 99.2 4.4E-10 1.5E-14 115.2 18.8 219 18-323 24-242 (330)
234 2ghs_A AGR_C_1268P; regucalcin 99.2 1.4E-08 4.7E-13 103.3 29.3 212 62-362 50-279 (326)
235 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.4E-16 127.9 5.2 205 24-307 8-216 (369)
236 1mda_H Methylamine dehydrogena 99.1 6.4E-10 2.2E-14 113.2 16.5 238 18-327 69-348 (368)
237 3dr2_A Exported gluconolactona 99.1 4E-08 1.4E-12 99.0 26.4 195 60-324 44-266 (305)
238 4a0p_A LRP6, LRP-6, low-densit 99.1 5.1E-05 1.8E-09 83.5 66.4 493 25-670 6-510 (628)
239 1fwx_A Nitrous oxide reductase 99.1 2.1E-08 7.2E-13 105.8 23.7 117 542-671 278-434 (595)
240 3s94_A LRP-6, low-density lipo 99.0 7E-05 2.4E-09 82.4 51.9 501 14-670 40-553 (619)
241 2iwa_A Glutamine cyclotransfer 99.0 8.7E-08 3E-12 91.7 24.4 211 51-327 11-239 (266)
242 2hz6_A Endoplasmic reticulum t 99.0 6.8E-11 2.3E-15 122.5 2.9 179 79-327 10-194 (369)
243 1kv9_A Type II quinohemoprotei 99.0 9.7E-08 3.3E-12 106.8 27.7 142 170-317 66-252 (668)
244 1w6s_A Methanol dehydrogenase 99.0 2E-07 6.8E-12 101.7 29.1 119 170-292 62-200 (599)
245 2ece_A 462AA long hypothetical 99.0 2.9E-07 9.9E-12 93.7 27.5 255 20-313 88-399 (462)
246 3s94_A LRP-6, low-density lipo 99.0 0.00011 3.6E-09 81.0 61.8 490 27-671 11-513 (619)
247 2ece_A 462AA long hypothetical 99.0 4.6E-07 1.6E-11 92.2 28.5 148 172-325 98-289 (462)
248 2ad6_A Methanol dehydrogenase 98.9 7.7E-07 2.6E-11 97.3 31.7 383 170-653 62-522 (571)
249 3ott_A Two-component system se 98.9 0.00021 7.1E-09 81.9 54.5 540 13-722 21-586 (758)
250 3nol_A Glutamine cyclotransfer 98.9 2.3E-07 7.7E-12 87.4 23.3 198 51-315 33-245 (262)
251 1kv9_A Type II quinohemoprotei 98.9 3.6E-07 1.2E-11 102.2 27.4 211 25-291 66-341 (668)
252 3ei3_A DNA damage-binding prot 98.9 0.00043 1.5E-08 81.5 59.7 497 17-670 330-915 (1158)
253 2ad6_A Methanol dehydrogenase 98.9 8.8E-07 3E-11 96.8 28.6 120 549-671 310-497 (571)
254 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00035 1.2E-08 76.9 56.9 500 14-670 37-551 (628)
255 3nok_A Glutaminyl cyclase; bet 98.8 4.1E-07 1.4E-11 85.6 20.4 196 51-314 45-254 (268)
256 3ott_A Two-component system se 98.8 0.00053 1.8E-08 78.5 59.8 529 14-722 63-626 (758)
257 1flg_A Protein (quinoprotein e 98.8 7.9E-06 2.7E-10 89.4 33.2 115 171-291 69-201 (582)
258 1w6s_A Methanol dehydrogenase 98.8 2.9E-06 1E-10 92.5 29.4 64 264-327 62-142 (599)
259 2iwa_A Glutamine cyclotransfer 98.8 1.8E-06 6.1E-11 82.6 24.2 204 15-283 22-237 (266)
260 1fwx_A Nitrous oxide reductase 98.8 2E-07 6.7E-12 98.6 18.6 209 23-325 99-361 (595)
261 3mbr_X Glutamine cyclotransfer 98.8 3.4E-06 1.2E-10 78.7 24.4 198 50-314 10-223 (243)
262 1npe_A Nidogen, entactin; glyc 98.8 7.7E-06 2.6E-10 80.3 28.8 232 25-327 1-240 (267)
263 1npe_A Nidogen, entactin; glyc 98.8 9.2E-06 3.2E-10 79.7 29.0 219 15-307 37-263 (267)
264 3nol_A Glutamine cyclotransfer 98.7 1.1E-06 3.9E-11 82.6 20.3 211 482-720 33-252 (262)
265 2fp8_A Strictosidine synthase; 98.7 3.5E-06 1.2E-10 85.4 24.7 256 14-327 19-315 (322)
266 3nok_A Glutaminyl cyclase; bet 98.7 8.3E-07 2.8E-11 83.5 17.9 209 483-720 46-262 (268)
267 2xbg_A YCF48-like protein; pho 98.7 6.7E-05 2.3E-09 75.8 33.8 278 13-415 35-320 (327)
268 3mbr_X Glutamine cyclotransfer 98.7 7.6E-06 2.6E-10 76.4 23.5 210 481-720 10-231 (243)
269 1flg_A Protein (quinoprotein e 98.7 1E-05 3.6E-10 88.4 28.4 119 550-671 331-519 (582)
270 3ei3_A DNA damage-binding prot 98.6 0.003 1E-07 74.5 58.6 412 171-672 524-1003(1158)
271 1k3i_A Galactose oxidase precu 98.6 5.4E-06 1.9E-10 93.0 24.3 247 18-326 190-498 (656)
272 2p4o_A Hypothetical protein; p 98.5 3.7E-05 1.3E-09 77.0 26.9 227 14-315 32-278 (306)
273 2fp8_A Strictosidine synthase; 98.5 3.4E-05 1.2E-09 78.1 26.1 195 61-323 19-267 (322)
274 3qqz_A Putative uncharacterize 98.4 0.00026 8.8E-09 67.3 27.3 209 53-322 20-250 (255)
275 3v64_C Agrin; beta propeller, 98.4 0.00061 2.1E-08 69.3 31.4 241 12-327 32-277 (349)
276 1k3i_A Galactose oxidase precu 98.4 6.5E-05 2.2E-09 84.2 26.3 105 543-657 401-530 (656)
277 2xe4_A Oligopeptidase B; hydro 98.3 1.9E-05 6.4E-10 89.9 20.6 197 15-281 175-398 (751)
278 2p4o_A Hypothetical protein; p 98.3 0.0006 2.1E-08 68.1 29.5 101 542-659 170-279 (306)
279 3v65_B Low-density lipoprotein 98.3 0.00051 1.7E-08 71.0 29.4 240 13-327 76-320 (386)
280 2xbg_A YCF48-like protein; pho 98.3 0.0023 7.9E-08 64.4 33.6 156 492-666 163-320 (327)
281 3qqz_A Putative uncharacterize 98.3 0.00087 3E-08 63.6 27.3 211 9-281 22-251 (255)
282 3v64_C Agrin; beta propeller, 98.2 0.002 6.7E-08 65.5 29.1 208 14-291 73-283 (349)
283 1ijq_A LDL receptor, low-densi 98.1 0.0063 2.2E-07 60.8 31.4 226 27-327 3-240 (316)
284 3tc9_A Hypothetical hydrolase; 98.1 0.00065 2.2E-08 71.3 24.7 243 15-324 138-429 (430)
285 3p5b_L Low density lipoprotein 98.1 0.003 1E-07 65.5 29.2 224 13-302 111-339 (400)
286 3v65_B Low-density lipoprotein 98.1 0.0012 4E-08 68.3 26.1 217 14-301 116-336 (386)
287 4hw6_A Hypothetical protein, I 98.1 0.0025 8.7E-08 66.7 28.3 244 15-324 140-432 (433)
288 1ijq_A LDL receptor, low-densi 98.0 0.0041 1.4E-07 62.2 27.9 209 14-291 30-246 (316)
289 2xe4_A Oligopeptidase B; hydro 98.0 0.00013 4.4E-09 83.0 18.2 194 62-324 175-397 (751)
290 3sov_A LRP-6, low-density lipo 97.9 0.002 6.8E-08 64.3 23.6 208 15-292 36-247 (318)
291 3p5b_L Low density lipoprotein 97.9 0.011 3.7E-07 61.2 29.1 228 26-327 84-322 (400)
292 3sov_A LRP-6, low-density lipo 97.9 0.0054 1.8E-07 61.2 25.5 195 492-720 35-236 (318)
293 3amr_A 3-phytase; beta-propell 97.9 0.0045 1.5E-07 61.0 23.8 187 79-324 41-262 (355)
294 4hw6_A Hypothetical protein, I 97.8 0.0068 2.3E-07 63.4 26.7 58 255-314 140-200 (433)
295 3kya_A Putative phosphatase; s 97.8 0.017 5.7E-07 60.6 27.4 249 15-327 140-477 (496)
296 3pbp_A Nucleoporin NUP82; beta 97.7 0.029 9.8E-07 56.5 27.4 223 493-720 67-386 (452)
297 3sre_A PON1, serum paraoxonase 97.7 0.0067 2.3E-07 60.8 23.1 188 494-709 52-282 (355)
298 3m0c_C LDL receptor, low-densi 97.7 0.015 5.2E-07 65.5 28.2 212 14-291 424-640 (791)
299 3m0c_C LDL receptor, low-densi 97.7 0.024 8.3E-07 63.8 29.4 238 14-327 385-634 (791)
300 3tc9_A Hypothetical hydrolase; 97.6 0.018 6E-07 60.3 25.9 154 62-282 138-300 (430)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.0031 1.1E-07 61.6 18.2 171 542-725 14-218 (334)
302 2p9w_A MAL S 1 allergenic prot 97.5 0.041 1.4E-06 53.7 23.5 158 17-234 16-215 (334)
303 3amr_A 3-phytase; beta-propell 97.4 0.077 2.6E-06 52.3 25.4 174 14-245 68-275 (355)
304 2vpj_A Kelch-like protein 12; 97.4 0.015 5.2E-07 57.6 21.0 145 171-325 114-278 (301)
305 1n7d_A LDL receptor, low-densi 97.4 0.00072 2.5E-08 75.7 11.8 226 14-303 406-634 (699)
306 3kya_A Putative phosphatase; s 97.4 0.13 4.5E-06 53.9 27.8 62 255-316 140-214 (496)
307 2ism_A Putative oxidoreductase 97.3 0.024 8.4E-07 57.4 21.5 96 14-120 31-146 (352)
308 2ism_A Putative oxidoreductase 97.3 0.2 6.7E-06 50.7 28.1 70 254-325 31-114 (352)
309 2xzh_A Clathrin heavy chain 1; 97.3 0.15 5.2E-06 49.2 29.2 88 224-325 48-135 (365)
310 2xn4_A Kelch-like protein 2; s 97.2 0.065 2.2E-06 53.0 23.3 146 171-326 110-277 (302)
311 1n7d_A LDL receptor, low-densi 97.2 0.00076 2.6E-08 75.5 9.6 220 35-327 386-616 (699)
312 3ii7_A Kelch-like protein 7; p 97.2 0.1 3.5E-06 51.7 24.0 155 171-353 103-285 (306)
313 2xzh_A Clathrin heavy chain 1; 97.1 0.25 8.6E-06 47.7 29.0 247 19-327 72-334 (365)
314 1zgk_A Kelch-like ECH-associat 97.0 0.067 2.3E-06 53.1 21.0 143 171-325 123-287 (308)
315 3a9g_A Putative uncharacterize 97.0 0.36 1.2E-05 48.7 31.7 73 253-326 28-115 (354)
316 3pbp_A Nucleoporin NUP82; beta 97.0 0.048 1.6E-06 54.9 18.8 154 498-664 27-208 (452)
317 2vpj_A Kelch-like protein 12; 96.9 0.26 9E-06 48.5 24.6 146 171-326 64-232 (301)
318 2xn4_A Kelch-like protein 2; s 96.9 0.16 5.4E-06 50.1 22.5 142 171-325 63-229 (302)
319 3ii7_A Kelch-like protein 7; p 96.9 0.19 6.5E-06 49.7 23.1 144 171-325 57-225 (306)
320 4asc_A Kelch repeat and BTB do 96.9 0.084 2.9E-06 52.5 20.4 126 180-315 117-253 (315)
321 2g8s_A Glucose/sorbosone dehyd 96.9 0.47 1.6E-05 47.8 25.8 67 255-323 272-350 (353)
322 2g8s_A Glucose/sorbosone dehyd 96.9 0.39 1.3E-05 48.5 25.1 57 255-312 19-86 (353)
323 1bpo_A Protein (clathrin); cla 96.4 0.96 3.3E-05 45.7 32.4 247 19-327 71-333 (494)
324 1zgk_A Kelch-like ECH-associat 96.4 0.34 1.2E-05 47.9 20.4 134 180-326 90-241 (308)
325 4asc_A Kelch repeat and BTB do 96.3 0.88 3E-05 45.0 23.6 105 214-325 98-221 (315)
326 2be1_A Serine/threonine-protei 96.3 0.0065 2.2E-07 60.2 7.0 210 26-288 11-236 (339)
327 3das_A Putative oxidoreductase 96.2 1.1 3.7E-05 44.6 28.0 77 13-97 31-116 (347)
328 2uvk_A YJHT; unknown function, 96.2 0.32 1.1E-05 49.3 20.0 33 24-56 19-52 (357)
329 1tl2_A L10, protein (tachylect 96.2 0.045 1.5E-06 49.6 11.4 151 542-719 42-207 (236)
330 2woz_A Kelch repeat and BTB do 96.2 0.5 1.7E-05 46.9 20.7 133 171-315 111-263 (318)
331 2uvk_A YJHT; unknown function, 96.1 0.86 2.9E-05 46.1 22.3 32 603-634 315-352 (357)
332 3sre_A PON1, serum paraoxonase 96.0 1.5 5E-05 43.8 26.5 169 15-242 113-308 (355)
333 3a9g_A Putative uncharacterize 96.0 1.6 5.4E-05 44.0 30.7 51 61-119 29-83 (354)
334 1cru_A Protein (soluble quinop 95.9 0.34 1.1E-05 50.8 18.5 111 541-657 27-163 (454)
335 1tl2_A L10, protein (tachylect 95.9 0.38 1.3E-05 43.6 15.7 105 207-325 91-208 (236)
336 3s25_A Hypothetical 7-bladed b 95.9 0.6 2E-05 45.7 19.0 143 496-671 57-219 (302)
337 3das_A Putative oxidoreductase 95.6 2 6.9E-05 42.6 30.5 74 252-325 30-116 (347)
338 2woz_A Kelch repeat and BTB do 95.6 2 6.7E-05 42.5 24.3 103 214-325 109-231 (318)
339 1cru_A Protein (soluble quinop 95.5 2.8 9.5E-05 43.8 30.0 60 254-313 27-98 (454)
340 1bpo_A Protein (clathrin); cla 95.4 2.6 9E-05 42.6 33.3 215 34-327 47-291 (494)
341 1xi4_A Clathrin heavy chain; a 94.7 3.1 0.0001 49.1 22.1 88 224-325 47-134 (1630)
342 1xi4_A Clathrin heavy chain; a 94.6 1 3.6E-05 52.9 17.9 246 20-327 72-333 (1630)
343 3s25_A Hypothetical 7-bladed b 93.9 5.2 0.00018 39.0 24.0 100 209-325 150-255 (302)
344 2zwa_A Leucine carboxyl methyl 93.1 3.6 0.00012 45.8 19.0 113 169-287 500-639 (695)
345 2be1_A Serine/threonine-protei 92.0 0.2 6.8E-06 49.6 6.1 115 171-292 11-139 (339)
346 3b7f_A Glycosyl hydrolase, BNR 91.8 12 0.00042 38.0 22.0 173 541-719 55-259 (394)
347 3qhy_B Beta-lactamase inhibito 91.7 8 0.00027 37.2 17.1 133 172-326 75-208 (282)
348 2zwa_A Leucine carboxyl methyl 91.3 15 0.00051 40.8 21.1 153 168-327 396-579 (695)
349 3b7f_A Glycosyl hydrolase, BNR 90.6 16 0.00055 37.1 29.0 55 26-88 23-77 (394)
350 3qhy_B Beta-lactamase inhibito 90.6 12 0.0004 36.0 17.0 133 172-326 36-169 (282)
351 3sbq_A Nitrous-oxide reductase 87.3 4.6 0.00016 42.3 11.6 104 542-656 324-453 (638)
352 2wg3_C Hedgehog-interacting pr 85.9 11 0.00039 39.1 14.3 114 541-657 14-158 (463)
353 3uc1_A DNA gyrase subunit A; D 85.7 28 0.00097 34.1 22.3 176 488-669 91-280 (327)
354 4hvt_A Ritya.17583.B, post-pro 82.4 65 0.0022 35.6 23.6 229 16-315 131-416 (711)
355 3sbq_A Nitrous-oxide reductase 81.8 4.3 0.00015 42.5 8.6 74 593-669 322-409 (638)
356 1zi0_A DNA gyrase subunit A; b 80.9 42 0.0014 32.5 24.9 258 399-668 4-277 (307)
357 4gq2_M Nucleoporin NUP120; bet 77.8 12 0.0004 43.4 11.7 39 205-243 237-275 (950)
358 3l6v_A GYRA, DNA gyrase subuni 77.3 62 0.0021 32.3 22.3 155 169-325 112-316 (370)
359 1zi0_A DNA gyrase subunit A; b 73.4 69 0.0023 31.0 23.8 154 171-325 110-277 (307)
360 2wg3_C Hedgehog-interacting pr 72.0 97 0.0033 32.1 29.0 61 594-656 276-354 (463)
361 3zwu_A Alkaline phosphatase PH 69.6 13 0.00044 39.9 8.6 61 594-655 476-548 (592)
362 4a9v_A PHOX; hydrolase, beta-p 67.0 23 0.00077 37.5 9.5 63 593-656 475-549 (592)
363 4fhn_B Nucleoporin NUP120; pro 64.9 9 0.00031 45.5 7.0 39 205-243 239-277 (1139)
364 4a9v_A PHOX; hydrolase, beta-p 62.9 25 0.00085 37.2 8.9 63 540-612 475-549 (592)
365 3zwu_A Alkaline phosphatase PH 61.5 21 0.00072 38.2 8.4 54 17-74 479-544 (592)
366 3uc1_A DNA gyrase subunit A; D 60.9 1.3E+02 0.0043 29.4 24.1 150 172-326 55-229 (327)
367 3f7f_A Nucleoporin NUP120; nuc 57.8 56 0.0019 35.7 10.8 37 205-243 223-259 (729)
368 2cn3_A Xyloglucanase, beta-1,4 56.7 2.4E+02 0.0082 31.3 42.6 57 14-72 23-83 (737)
369 1wp5_A Topoisomerase IV; broke 56.1 1.5E+02 0.0052 28.8 23.8 255 399-668 6-277 (323)
370 4gq2_M Nucleoporin NUP120; bet 56.0 2.8E+02 0.0096 31.9 23.7 38 542-579 237-274 (950)
371 3no0_A DNA gyrase subunit A; D 53.7 1.5E+02 0.0051 28.0 21.8 153 171-326 81-247 (276)
372 3mez_B Mannose-specific lectin 51.4 88 0.003 24.6 11.3 83 604-711 23-105 (113)
373 3no0_A DNA gyrase subunit A; D 50.8 1.7E+02 0.0057 27.7 22.5 169 541-722 68-246 (276)
374 3mez_B Mannose-specific lectin 50.8 90 0.0031 24.6 9.4 25 258-283 60-84 (113)
375 4fhn_B Nucleoporin NUP120; pro 45.3 1.4E+02 0.0049 35.3 12.8 32 296-327 239-270 (1139)
376 1wp5_A Topoisomerase IV; broke 43.1 2.4E+02 0.0082 27.3 23.4 163 552-722 106-277 (323)
377 3q6k_A 43.2 kDa salivary prote 38.6 3.1E+02 0.011 27.3 22.9 99 178-283 179-306 (381)
378 3f7f_A Nucleoporin NUP120; nuc 37.2 47 0.0016 36.2 6.3 37 62-106 223-259 (729)
379 3q6k_A 43.2 kDa salivary prote 36.6 3.3E+02 0.011 27.1 22.5 108 492-611 220-341 (381)
380 3mez_A Mannose-specific lectin 35.2 1.6E+02 0.0055 23.0 8.2 16 693-711 86-101 (111)
381 1suu_A DNA gyrase subunit A; t 28.8 4E+02 0.014 25.6 30.3 216 399-625 9-232 (312)
382 2zux_A YESW protein; beta-prop 25.2 6.2E+02 0.021 26.7 20.6 42 251-292 361-409 (591)
383 1zvt_A Topoisomerase IV subuni 24.0 4.3E+02 0.015 24.4 13.3 124 543-668 35-163 (256)
384 1suu_A DNA gyrase subunit A; t 24.0 4.8E+02 0.016 24.9 29.4 174 487-669 42-232 (312)
385 3a0c_A Mannose/sialic acid-bin 23.5 2.6E+02 0.0089 21.7 10.8 87 213-322 18-104 (110)
386 1b2p_A Protein (lectin); manno 22.5 2.9E+02 0.0099 21.8 10.3 60 602-666 27-86 (119)
387 3dzw_A Agglutinin; lectin, man 22.0 2.8E+02 0.0095 21.4 11.4 58 604-666 18-75 (109)
388 1zvt_A Topoisomerase IV subuni 21.2 4.9E+02 0.017 24.0 13.7 151 554-722 4-163 (256)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-64 Score=569.24 Aligned_cols=566 Identities=21% Similarity=0.287 Sum_probs=460.5
Q ss_pred ceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 3 IYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 3 ~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
++..+.+++|.+.|+|++|||||++||+|+.|+.|+|||. +++ +..++.+| ...|++|+|+||+++ |+
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~----~~~~l~gh-~~~V~~l~fspdg~~------la 73 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ----LLQTLTGH-SSSVWGVAFSPDGQT------IA 73 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC----EEEEEECC-SSCEEEEEECTTSSE------EE
T ss_pred cEEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC----EEEEEeCC-CCCEEEEEECCCCCE------EE
Confidence 5556679999999999999999999999999999999995 444 57888888 799999999999988 99
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+++.|++|++||+ +++++..+.+|...|.+++|+|++..+++++.++.. ..|+... .......+......
T Consensus 74 s~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~---~~~~~~~------~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 74 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNG------QLLQTLTGHSSSVW 143 (577)
T ss_dssp EEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE---EEEETTC------CEEEEECCCSSCEE
T ss_pred EEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCce---eeccccc------ceeeeccCCCCcee
Confidence 9999999999996 578899999999999999999999888776554322 2222111 11111222333333
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
.....+++..++.++.++.+++|+.. .... .....|...|.+++|+|++++|++++.|+.|++||. +++.+..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~ 218 (577)
T 2ymu_A 144 GVAFSPDGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 218 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT-SCEE---EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred eeeeecCCccceecccccceeccccc-eeee---eeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEe
Confidence 44455677899999999999999865 3333 556688999999999999999999999999999995 677888777
Q ss_pred eecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
.|...|.+++|+|++ .|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++|
T Consensus 219 --------~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 219 --------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp --------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 688999999999999 79999999999999965 78889999999999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
+.... .+..+.+|...|.+++++ |+++ .|
T Consensus 290 ~~~~~------------------~~~~~~~h~~~v~~~~~~---------~~~~------------------------~l 318 (577)
T 2ymu_A 290 NRNGQ------------------LLQTLTGHSSSVWGVAFS---------PDGQ------------------------TI 318 (577)
T ss_dssp ETTSC------------------EEEEECCCSSCEEEEEEC---------TTSS------------------------EE
T ss_pred eCCCc------------------EEEEEecCCCCeEEEEEC---------CCCC------------------------EE
Confidence 96432 466788999999999998 7776 99
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCc
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHAS 479 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~ 479 (817)
++++.|+.+++|+....... ....+...+.+++++|++.+++++.. .+.+|+...
T Consensus 319 ~t~~~d~~i~~w~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--------------- 375 (577)
T 2ymu_A 319 ASASDDKTVKLWNRNGQHLQ--------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------- 375 (577)
T ss_dssp EEEETTSCEEEEETTSCEEE--------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---------------
T ss_pred EEEeCCCeEEEEeCCCCeeE--------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---------------
Confidence 99999999999998653211 11223456778999999998886654 899998421
Q ss_pred cceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 480 TSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 480 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
.+......+...|.+++|+|||++|+++ .++.+++|+.. +..+ ..+..|...|++++|+||+++|+++
T Consensus 376 --~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 376 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLL-----QTLTGHSSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----CCEE-----EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred --CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCEE-----EEecCCCCCeEEEEECCCCCEEEEE
Confidence 1222334566789999999999998885 77999999853 2222 3345677789999999999999999
Q ss_pred ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCC
Q 003467 559 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 638 (817)
Q Consensus 559 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 638 (817)
+.|+.|++||. +++.+..+.+ |...|++++|+||+++||+++.|+.|++||. +++....+. .|...
T Consensus 445 ~~d~~v~~w~~-~~~~~~~~~~-----------~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~ 510 (577)
T 2ymu_A 445 SDDKTVKLWNR-NGQLLQTLTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSS 510 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEEC-----------CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSC
T ss_pred cCCCEEEEEEC-CCCEEEEEcC-----------CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCC
Confidence 99999999996 5778888887 8999999999999999999999999999996 456565664 46679
Q ss_pred eEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcC-ceEEE
Q 003467 639 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA-RAMCV 717 (817)
Q Consensus 639 i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~-~~~~~ 717 (817)
|++++|+| ++++||+++.|+.|++||.. +++ ...+.+|.+.|++++|+||| ..++..+. ..+.+
T Consensus 511 v~~l~~s~-dg~~l~s~~~dg~v~lwd~~-~~~-----------~~~~~~h~~~v~~~~fs~dg--~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 511 VRGVAFSP-DGQTIASASDDKTVKLWNRN-GQL-----------LQTLTGHSSSVWGVAFSPDG--QTIASASSDKTVKL 575 (577)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEECTT-SCE-----------EEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEE
T ss_pred EEEEEEcC-CCCEEEEEECcCEEEEEeCC-CCE-----------EEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCEEEE
Confidence 99999999 99999999999999999975 443 56789999999999999985 34444333 33444
Q ss_pred E
Q 003467 718 I 718 (817)
Q Consensus 718 ~ 718 (817)
.
T Consensus 576 W 576 (577)
T 2ymu_A 576 W 576 (577)
T ss_dssp E
T ss_pred e
Confidence 3
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-63 Score=559.61 Aligned_cols=545 Identities=14% Similarity=0.137 Sum_probs=428.8
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
.+.+.+.+++|||||++||++. ++.|.|||+.+++ ....+.+| ...|++++|+|+|++ ||+++.|++|
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~----~~~~~~~h-~~~v~~~~~spdg~~------lasg~~d~~v 83 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT----DTEIYTEH-SHQTTVAKTSPSGYY------CASGDVHGNV 83 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS----CCEEECCC-SSCEEEEEECTTSSE------EEEEETTSEE
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcc----cCeEecCC-CCceEEEEECCCCcE------EEEEeCCCCE
Confidence 4457889999999999999987 4699999998776 36677887 789999999999988 9999999999
Q ss_pred EEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 91 SEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 91 ~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
++||+.+++ ....+.+|.++|.+++|+|++
T Consensus 84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------------------------------------------ 115 (611)
T 1nr0_A 84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------------------------------------------ 115 (611)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------------------------------------------
T ss_pred EEeECCCCcceeeEeecccCCceEEEEECCCC------------------------------------------------
Confidence 999997543 456788999999999999999
Q ss_pred cCCEEEEEeCC----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 169 EDRRVALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 169 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
++|++++.+ +.|++||. +... ..+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.
T Consensus 116 --~~l~~~~~~~~~~~~v~~wd~--~~~~---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~- 187 (611)
T 1nr0_A 116 --KRIAAVGEGRERFGHVFLFDT--GTSN---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG- 187 (611)
T ss_dssp --CEEEEEECCSSCSEEEEETTT--CCBC---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-
T ss_pred --CEEEEEECCCCceeEEEEeeC--CCCc---ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-
Confidence 477777764 47888874 4444 67899999999999999987 69999999999999999988887776
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee-------cCccCeeEEEEecCCCEEEEEccC
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-------FHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
+|...|++++|+|++ .|++++.|++|++||..+++.+..+. +|.+.|.+++|+|++++|++++.|
T Consensus 188 -------~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 188 -------EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp -------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred -------cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 799999999999999 79999999999999999999988884 799999999999999999999999
Q ss_pred CcEEEEEeecccCCCCCCCCCc---------------------cccceE-----EEeeccccCCCccceeEeecccCCCC
Q 003467 316 GQVILYKASCESIGPNDGLSSS---------------------EVIKKW-----IYVGSVRAHTHDVRALTVAVPISRED 369 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~---------------------~~~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~~ 369 (817)
++|++||+.+++....-..... .....| .....+.+|...|.+++++
T Consensus 261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s------- 333 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS------- 333 (611)
T ss_dssp SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-------
T ss_pred CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-------
Confidence 9999999876542100000000 000001 1334567899999999998
Q ss_pred CCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEE
Q 003467 370 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLL 449 (817)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 449 (817)
|+++ +|++++.|+.|++||+.+...... ....+...+.++++++++.+
T Consensus 334 --pdg~------------------------~l~s~s~D~~v~~Wd~~~~~~~~~------~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 334 --ADGK------------------------TLFSADAEGHINSWDISTGISNRV------FPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp --TTSS------------------------EEEEEETTSCEEEEETTTCCEEEC------SSCSCSSCEEEEEECTTSCE
T ss_pred --CCCC------------------------EEEEEeCCCcEEEEECCCCceeee------cccCCcceEEEEEECCCCcE
Confidence 8886 999999999999999987543221 11234566778899988876
Q ss_pred EEEe-CCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCce
Q 003467 450 LVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE 528 (817)
Q Consensus 450 l~~~-~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~ 528 (817)
+... ++.+++|+........ ... ..........+++++|+|+.++++.+..+++|+. + .+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~-----~-~~ 442 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDS-----------SKA--VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH-----G-KL 442 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCT-----------TSC--CEEECSSCEEEEEECTTSSCEEEEESSEEEEEET-----T-EE
T ss_pred EEEEcCCceEEeecCCccccc-----------cce--eeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC-----C-ce
Confidence 6544 4499999876543221 000 0111224567899999998888888888999972 1 12
Q ss_pred EEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCce--eeeeccCcccccccCCCCCCceeEEEEccCCC
Q 003467 529 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQ 606 (817)
Q Consensus 529 ~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 606 (817)
.. . .+...+.+++|+|||++||+|+.|++|++||+.+++. +.. .+ |...|++++|||||+
T Consensus 443 ~~---~---~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~-----------h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 443 TE---V---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV-----------HPAEITSVAFSNNGA 504 (611)
T ss_dssp EE---E---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EE-----------CSSCEEEEEECTTSS
T ss_pred ee---e---ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cC-----------CCCceEEEEECCCCC
Confidence 11 1 1445789999999999999999999999999987653 233 33 899999999999999
Q ss_pred EEEEEeCCCcEEEEECCC-cceEEE-EecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccC-
Q 003467 607 WLAAVNCFGDVYIFNLEI-QRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP- 683 (817)
Q Consensus 607 ~la~~~~dg~i~vwd~~~-~~~~~~-~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~- 683 (817)
+||+++.|++|++|++.+ ++.... ....|...|++++|+| |+++||+++.|++|++||+++++. ..
T Consensus 505 ~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~----------~~~ 573 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSD----------HPI 573 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTS----------CCE
T ss_pred EEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCccc----------ccc
Confidence 999999999999999987 543322 2234778999999999 999999999999999999987652 12
Q ss_pred cchhcC-CCceeEEEECCCCCCCEEEEE-cCceEEEEEc
Q 003467 684 RRYQEF-PGEVIGLSFSPSPSSSSVIIY-SARAMCVIDF 720 (817)
Q Consensus 684 ~~~~~~-~~~v~~l~f~p~~~~~~~~~~-~~~~~~~~d~ 720 (817)
..+.+| .+.|.+++|+|++. ++.. .+..+.+.|+
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~---l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT---IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE---EEEEETTSCEEEEEC
T ss_pred hhhccCcccCeeEEEEcCCCE---EEEecCCCCEEEEec
Confidence 457789 79999999999842 4333 3445666664
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.2e-63 Score=554.39 Aligned_cols=504 Identities=16% Similarity=0.168 Sum_probs=404.8
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
..+.+.+|...|++++|||||++||+|+.||+|+|||+.+++.. +..++.+| .+.|.+++|+|+++. |+++
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~--~~~~~~~~-~~~v~~v~fs~dg~~------l~~~ 121 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI--LKTTIPVF-SGPVKDISWDSESKR------IAAV 121 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC--EEEEEECS-SSCEEEEEECTTSCE------EEEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce--eeEeeccc-CCceEEEEECCCCCE------EEEE
Confidence 45678899999999999999999999999999999999765421 45567777 789999999999987 9988
Q ss_pred eCC----CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 85 SID----GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 85 ~~d----~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+.+ +.|.+|| +++....+.+|...|.+++|+|++..
T Consensus 122 ~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~-------------------------------------- 161 (611)
T 1nr0_A 122 GEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF-------------------------------------- 161 (611)
T ss_dssp ECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC--------------------------------------
T ss_pred ECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCe--------------------------------------
Confidence 865 3566666 67777889999999999999999832
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
.|++|+.|+.|++||..+++. ...+.+|.+.|.+++|+|||++|++|+.|++|++||+.+++.+..
T Consensus 162 -----------~l~s~s~D~~v~lwd~~~~~~---~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 162 -----------RIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp -----------EEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -----------EEEEEeCCCeEEEEECCCCeE---eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 699999999999999865433 378899999999999999999999999999999999999988776
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEE------------------------------
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA------------------------------ 289 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~------------------------------ 289 (817)
+... .....+|...|++++|+|++ .|++++.|++|++||+.+++++.+
T Consensus 228 ~~~~-~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 228 FEDD-SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp CBCT-TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eccc-cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 6310 00112588999999999999 799999999999999998765543
Q ss_pred -------------eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc-ccCCCc
Q 003467 290 -------------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHD 355 (817)
Q Consensus 290 -------------~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~ 355 (817)
+.+|...|.+++|+|++++|++++.|+.|++||+.++. ....+ ..|...
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-----------------~~~~~~~~h~~~ 369 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-----------------SNRVFPDVHATM 369 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------EEECSSCSCSSC
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----------------eeeecccCCcce
Confidence 35788999999999999999999999999999998876 33333 679999
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCce
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 435 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (817)
|.+++++ +++ .+++++.|+.+++|+............ .....
T Consensus 370 v~~~~~s---------~~~-------------------------~l~s~s~d~~v~~w~~~~~~~~~~~~~----~~~~~ 411 (611)
T 1nr0_A 370 ITGIKTT---------SKG-------------------------DLFTVSWDDHLKVVPAGGSGVDSSKAV----ANKLS 411 (611)
T ss_dssp EEEEEEC---------TTS-------------------------CEEEEETTTEEEEECSSSSSSCTTSCC----EEECS
T ss_pred EEEEEEC---------CCC-------------------------cEEEEEcCCceEEeecCCcccccccee----eeecC
Confidence 9999996 444 688999999999999876432211000 00011
Q ss_pred eeecceeecCCeE-EEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCc
Q 003467 436 HLVHNTIFSHTSL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVK 513 (817)
Q Consensus 436 ~~~~~~~~s~~~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~ 513 (817)
.....+++++++. +++.....+.+|+-. .+..+ ++...+.+++|+|||++||++ .++.
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~------------------~~~~~--~~~~~v~~va~spdg~~lasgs~D~~ 471 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHG------------------KLTEV--PISYNSSCVALSNDKQFVAVGGQDSK 471 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETT------------------EEEEE--ECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCC------------------ceeee--ecCCCceEEEEeCCCCEEEEeCCCCe
Confidence 2234678889884 445555688888721 12222 245679999999999999995 7799
Q ss_pred eEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC-Cceeee--eccCcccccccCC
Q 003467 514 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHT--FTPCREEHDREIQ 590 (817)
Q Consensus 514 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~-~~~~~~--~~~~~~~~~~~~~ 590 (817)
|++|++.. + ..... .. ..|...|++++|+|||++|++++.|++|++|++.+ ++++.. +..
T Consensus 472 v~lwd~~~---~-~~~~~--~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~---------- 534 (611)
T 1nr0_A 472 VHVYKLSG---A-SVSEV--KT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF---------- 534 (611)
T ss_dssp EEEEEEET---T-EEEEE--EE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC----------
T ss_pred EEEEEccC---C-ceeee--ec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee----------
Confidence 99999975 1 11011 11 45777899999999999999999999999999987 555443 223
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEE-EEecCC-CCCeEEEEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 591 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW-FISRLE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 591 ~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~-~~~~~~-~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
|...|++++|||||++||+++.|++|+|||++++.... .....| ...|++++|+| ++. |++++.|++|++|++.
T Consensus 535 -H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 535 -HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred -cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 89999999999999999999999999999999876332 344556 68999999999 887 9999999999999984
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-59 Score=529.23 Aligned_cols=524 Identities=21% Similarity=0.287 Sum_probs=427.8
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.+.+.+|.++|++++||||+++||+++.|++|+|||.. ++ +..++.+| ...|.+++|+|++++ |++++
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~----~~~~~~~~-~~~v~~~~~s~d~~~------l~~~~ 117 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGH-SSSVRGVAFSPDGQT------IASAS 117 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC----EEEEECCC-SSCEEEEEECTTSSE------EEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CC----EEEEEECC-CCCEEEEEECCCCCE------EEEEc
Confidence 45678999999999999999999999999999999964 44 57788887 789999999999988 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.|+.+++|+... ........+...+..+.++|++..+......... ..+.... .................
T Consensus 118 ~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~v~~~~ 187 (577)
T 2ymu_A 118 DDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNG------QLLQTLTGHSSSVWGVA 187 (577)
T ss_dssp TTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE---EEECTTS------CEEEEEECCSSCEEEEE
T ss_pred CCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceecccccce---eccccce------eeeeeccCCCcceeeee
Confidence 999999999765 4566777899999999999999776554433221 1111100 01111112222233344
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
..++++++++++.||.|++||.. ++.+ ..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.
T Consensus 188 ~~~~~~~l~~~~~d~~v~~w~~~-~~~~---~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~--- 259 (577)
T 2ymu_A 188 FSPDGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--- 259 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT-SCEE---EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEEC---
T ss_pred ecCCCCEEEEEcCCCEEEEEeCC-CcEE---EEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEe---
Confidence 45677899999999999999964 4444 678899999999999999999999999999999996 577777765
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
+|...|.+++|+|++ .+++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++|+..
T Consensus 260 -----~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 260 -----GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -----cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 688999999999999 79999999999999975 78888999999999999999999999999999999999976
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
.. .+..+..|...|.+++++ |+++ +|+++
T Consensus 334 ~~------------------~~~~~~~~~~~v~~~~~s---------~~g~------------------------~l~~~ 362 (577)
T 2ymu_A 334 GQ------------------HLQTLTGHSSSVWGVAFS---------PDGQ------------------------TIASA 362 (577)
T ss_dssp SC------------------EEEEECCCSSCEEEEEEC---------TTSS------------------------EEEEE
T ss_pred CC------------------eeEEEeCCCCCEEEEEEC---------CCCC------------------------EEEEE
Confidence 54 355678899999999998 8876 99999
Q ss_pred cCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC--CeEEEEEecccCCcccCCCCCCCCccce
Q 003467 405 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSL 482 (817)
Q Consensus 405 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~g~~~~~~ 482 (817)
+.|+.+++|+..... .. ....+...+.+++|+|++.+++++. +.+.+|+... .
T Consensus 363 ~~dg~v~~~~~~~~~-~~-------~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----------------~ 417 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQL-LQ-------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----------------Q 417 (577)
T ss_dssp ETTSEEEEEETTCCE-EE-------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-----------------C
T ss_pred eCCCEEEEEcCCCCE-EE-------EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------------C
Confidence 999999999964321 11 1122345678899999998887654 4899997421 1
Q ss_pred eeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecC
Q 003467 483 LVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD 561 (817)
Q Consensus 483 ~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~d 561 (817)
+......+...|.+++|+||+++|+++ .++.+++|++.. ..+ ..+..|...+++++|+||+++|++++.|
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~-----~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLL-----QTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEE-----EEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEE-----EEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 223334566889999999999999885 779999999642 222 3355677789999999999999999999
Q ss_pred CcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 562 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 562 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
+.|++||. +++.++++.+ |...|++++|||||++||+++.||.|+|||.. ++....+. .|...|++
T Consensus 489 ~~i~iw~~-~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~-~h~~~v~~ 554 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWG 554 (577)
T ss_dssp SEEEEEET-TSCEEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEE-CCSSCEEE
T ss_pred CEEEEEcC-CCCEEEEEeC-----------CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEc-CCCCCEEE
Confidence 99999995 6888999988 89999999999999999999999999999974 55555554 57789999
Q ss_pred EEecCCCCCeEEEEecCCeEEEEE
Q 003467 642 AGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 642 l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
++|+| |+++|++++.|++|++||
T Consensus 555 ~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 555 VAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEcC-CCCEEEEEeCCCEEEEeC
Confidence 99999 999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-59 Score=572.04 Aligned_cols=559 Identities=14% Similarity=0.146 Sum_probs=455.8
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++ +...+.+| ...|.+++|+|++++ |++++.|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----~~~~~~~h-~~~v~~~~~s~~~~~------l~s~~~d 678 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAH-EDEVLCCAFSSDDSY------IATCSAD 678 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCC-SSCEEEEEECTTSSE------EEEEETT
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----EEEEeccC-CCCEEEEEEecCCCE------EEEEeCC
Confidence 457899999999999999999999999999999999987 57788877 799999999999988 9999999
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
++|++||+.+++++..+.+|...|++++|+|++..
T Consensus 679 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------------------------------- 713 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH--------------------------------------------- 713 (1249)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSC---------------------------------------------
T ss_pred CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCc---------------------------------------------
Confidence 99999999999999999999999999999997643
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCC
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 247 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~ 247 (817)
..+++|+.||.|++||+.++... ..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+......
T Consensus 714 ---~~l~sg~~d~~v~vwd~~~~~~~---~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 714 ---LLLATGSNDFFLKLWDLNQKECR---NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp ---CEEEEEETTSCEEEEETTSSSEE---EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred ---eEEEEEeCCCeEEEEECCCcchh---heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 38999999999999999877665 778899999999999999999999999999999999988776665421100
Q ss_pred -----------------------------------------------CCCCCceeEEEeEEecCC-eEEEEcCCCcEEEE
Q 003467 248 -----------------------------------------------LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 279 (817)
Q Consensus 248 -----------------------------------------------~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iw 279 (817)
...+|...|.+++|+|++ .+++++.+|.|++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 011567788999999999 79999999999999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCc---------------cccceEE
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS---------------EVIKKWI 344 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------~~~~~~~ 344 (817)
|+.++..+..+.+|...|.+++|+|+++++++++.||.|++|++.............. .......
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 9999999999999999999999999999999999999999999875432110000000 0000000
Q ss_pred Ee-----eccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 345 YV-----GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 345 ~~-----~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
.. .....+...+.+++++ |+++ ++++|+.+|.|.+|++.+..
T Consensus 948 ~~~~~~~~~~~~~~~~i~~~~~s---------p~g~------------------------~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 948 LIAGKTGQIDYLPEAQVSCCCLS---------PHLE------------------------YVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp EEEESSCCEEEECCSCEEEEEEC---------TTSS------------------------EEEEEETTSCCEEEETTTTS
T ss_pred EEecCcceEEEcccCcEEEEEEc---------CCCC------------------------EEEEEcCCCCEEEEEcCCCc
Confidence 00 0011234456777776 6665 99999999999999998765
Q ss_pred ccCCcccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEE
Q 003467 420 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 497 (817)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 497 (817)
.... ...+...+.+++|+|++.++++++. .+.+|++..+... ....+...+.++
T Consensus 995 ~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-----------------~~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 995 VFSS-------GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-----------------FLQAHQETVKDF 1050 (1249)
T ss_dssp CEEE-------CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-----------------CCBCCSSCEEEE
T ss_pred eeee-------cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-----------------EEecCCCcEEEE
Confidence 3321 1235567889999999998887654 8999998754311 123456789999
Q ss_pred EecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeee
Q 003467 498 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT 577 (817)
Q Consensus 498 ~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~ 577 (817)
++++++.+++.+.++.+++|++.. +... ..+..|...+.+++|+||+++|++++.||+|++||+.+++.+.+
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~---~~~~-----~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVIT---GRIE-----RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTT---TCCC-----EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EEcCCCcEEEEECCCcEEEEECCC---Ccee-----EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 999999988889999999999976 3332 33456777899999999999999999999999999999999888
Q ss_pred eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEE--------ecCCCCCeEEEEecCCCC
Q 003467 578 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI--------SRLEGASVTAAGFPPQNN 649 (817)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~--------~~~~~~~i~~l~~sp~d~ 649 (817)
+.+ |...|++++|||||++||+++.||.|++||+.+++....+ ...|...|++++|+| |+
T Consensus 1123 l~~-----------h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg 1190 (1249)
T 3sfz_A 1123 LKG-----------HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DS 1190 (1249)
T ss_dssp CCC-----------CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECT-TS
T ss_pred ecc-----------CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECC-CC
Confidence 888 8999999999999999999999999999999988765433 134667899999999 99
Q ss_pred CeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEE-cCceEEEEEc
Q 003467 650 NVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY-SARAMCVIDF 720 (817)
Q Consensus 650 ~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~-~~~~~~~~d~ 720 (817)
.+|++++ |.|++||+.+++. ...+..|.+.|.+++|+|+| ..+++. .+..++++++
T Consensus 1191 ~~l~s~~--g~v~vwd~~~g~~-----------~~~~~~~~~~i~~~~~s~dg--~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1191 KTLVSAG--GYLKWWNVATGDS-----------SQTFYTNGTNLKKIHVSPDF--RTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCEEEES--SSEEEBCSSSCBC-----------CCCCCCSSCCCCCCEECSSS--CCEEEECTTCCEEEECC
T ss_pred CEEEECC--CeEEEEECCCCce-----------eeeeeccCCcccEEEECCCC--CEEEEecCCcEEEEEee
Confidence 9998885 8999999999986 66788889999999999984 344433 3345777665
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-56 Score=509.46 Aligned_cols=564 Identities=15% Similarity=0.160 Sum_probs=452.5
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCc-EEEEEEee--cCCCCCCCceEEEeeC
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSR-ISSLVWCH--AGKMGLPGGRLFSSSI 86 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~-V~~l~~s~--~~~~~~~~~~l~s~~~ 86 (817)
..|++.|++++|||||++||+++ ++.|.|||+.++.........+.+| ... |.+++|+| ++++ |++++.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~sp~~~~~~------l~s~~~ 86 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGH-GSSVVTTVKFSPIKGSQY------LCSGDE 86 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTT-TTSCEEEEEECSSTTCCE------EEEEET
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecC-CCceEEEEEECcCCCCCE------EEEecC
Confidence 46789999999999999999998 7899999999871111147788888 677 99999999 9988 999999
Q ss_pred CCeEEEEECCCC--------eEEEEEeecCceEEEEeeecCCCccceeeccCccc-cCccccCCCCCCCCccccccCCCC
Q 003467 87 DGSVSEWDLYDL--------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI-GNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 87 d~~i~vwd~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
||+|++||+.++ +.+..+..|...|.+++|+|++..+++++...+.. ....|+ .. .......++
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~------~~~~~~~~~ 159 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SG------NSLGEVSGH 159 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TC------CEEEECCSC
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CC------CcceeeecC
Confidence 999999999855 77788889999999999999999888776554322 222333 11 112222333
Q ss_pred CCccccccccccCC-EEEEEeCCCcEEEEEecCCCceeEeeccCCccc---eEEEEEEccC-CCEEEEeeCCCcEEEEEC
Q 003467 158 DSDELHEQSVVEDR-RVALACDDGCVRIYRITDSDELIYHRSLPRVSG---RVLSVTWSAD-GNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 158 ~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~d-g~~l~s~~~dg~i~vwd~ 232 (817)
..........++++ .+++++.|+.|++||+.+++.+ ..+.+|.. .|.+++|+|+ +++|++++.||.|++||+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee---eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 33334444455665 8999999999999998765544 77888998 9999999999 999999999999999999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecC----ccCeeEEEEecCCC
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH----KGDVNALAAAPSHN 307 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~ 307 (817)
.+++.+..+... ...|...|.+++|+ ++ .|++++.||.|++||+++++.+..+..+ ...+.++.|+ +++
T Consensus 237 ~~~~~~~~~~~~----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 237 KSGEFLKYIEDD----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG 310 (615)
T ss_dssp TTCCEEEECCBT----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred CCCCEeEEeccc----ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence 999988877210 00378899999999 77 7999999999999999999999998876 4678888886 889
Q ss_pred EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcc
Q 003467 308 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 387 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
++++++.||.|++|++.++. .+..+..|...|.++++ +
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~-----------------~~~~~~~~~~~v~~~~~-~------------------------ 348 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDE-----------------VLKTISGHNKGITALTV-N------------------------ 348 (615)
T ss_dssp EEEEEETTSCEEEEETTEEE-----------------EEEEECCCSSCEEEEET-T------------------------
T ss_pred eEEEEECCCCEEEEECCCCc-----------------EEEEEeCCCCCEEEEEe-c------------------------
Confidence 99999999999999998766 67788899999998876 2
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE-eCCeEEEEEecccC
Q 003467 388 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ-YSCRLDILSVRLEN 466 (817)
Q Consensus 388 ~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~~i~i~~~~~~~ 466 (817)
+ +++++.||.|++|++... . ..+...+.+++++++..++.. .++.+.+|++....
T Consensus 349 -----------~-l~~~~~dg~i~~w~~~~~-----------~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 349 -----------P-LISGSYDGRIMEWSSSSM-----------H-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp -----------T-TEEEETTSCEEETTTTEE-----------E-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred -----------C-cEEECCCCeEEEEEchhh-----------c-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 2 889999999999998711 1 334566778888555444443 34589999877544
Q ss_pred CcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEE
Q 003467 467 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM 546 (817)
Q Consensus 467 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 546 (817)
.. ..+.+++++|+|.+++++.++.+.+|++.. +..+..+ .+...+.++
T Consensus 405 ~~-----------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~ 452 (615)
T 1pgu_A 405 FG-----------------------SQPKVASANNDGFTAVLTNDDDLLILQSFT---GDIIKSV------RLNSPGSAV 452 (615)
T ss_dssp CS-----------------------SCEEEEEECSSSEEEEEETTSEEEEEETTT---CCEEEEE------ECSSCEEEE
T ss_pred cc-----------------------CCceEEEEcCCCCEEEEeCCCceEEEeccC---Cceeeec------ccCCCceEE
Confidence 22 267889999999999999999999999754 3332111 245579999
Q ss_pred EEecCCCEEEEEec-CCcEEEEEccCCcee-eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCC
Q 003467 547 IFSYDSSQLIIAGH-DRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI 624 (817)
Q Consensus 547 ~fspd~~~l~~~~~-dg~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~ 624 (817)
+|+ +++|++++. |+.|++||+.+++.. ..+.. |...|++++|+|||++|++++.||.|++||+.+
T Consensus 453 ~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 453 SLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-----------LRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519 (615)
T ss_dssp EEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSC-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEc--CCEEEEeecCCCeEEEEECCCccccccccCC-----------ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence 999 999999999 999999999887665 55555 899999999999999999999999999999999
Q ss_pred cceEEEEecCCCCCeEEEEecCC---------CCCeEEEEecCCeEEEEEcCCC-ccccchhcccCccCcchhcCCCcee
Q 003467 625 QRQHWFISRLEGASVTAAGFPPQ---------NNNVLIITTSSNQVYVFDVEAK-QLGEWSMQHTFVLPRRYQEFPGEVI 694 (817)
Q Consensus 625 ~~~~~~~~~~~~~~i~~l~~sp~---------d~~~l~~~~~d~~i~vwd~~~~-~~~~ws~~~~~~~~~~~~~~~~~v~ 694 (817)
++....+...|...|++++|+|. ++++|++++.|+.|++||++++ ++ ...+.+|.+.|.
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~h~~~v~ 588 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-----------IKALNAHKDGVN 588 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-----------EEETTSSTTCEE
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee-----------chhhhcCccceE
Confidence 99877665547789999999993 6789999999999999999987 44 567889999999
Q ss_pred EEEECCCCCCCEEEEEcCceEEEEEcC
Q 003467 695 GLSFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 695 ~l~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
+++|+|++. .+....+..+.+.|+.
T Consensus 589 ~l~~s~~~~--l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 589 NLLWETPST--LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEEETTE--EEEEETTSCEEEEEEC
T ss_pred EEEEcCCCC--eEEecCCceEEEEeee
Confidence 999999853 3333345567888764
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-53 Score=496.73 Aligned_cols=586 Identities=11% Similarity=0.073 Sum_probs=412.1
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
..+|++.|++++|+|++++||+|+.||+|+||+..+.+ +... ..| ...|.+|+|+| +++ |++++.|+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~----~~~~-~~~-~~~V~~l~fsp-g~~------L~S~s~D~ 79 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE----VVIK-LED-RSAIKEMRFVK-GIY------LVVINAKD 79 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE----EEEE-CSS-CCCEEEEEEET-TTE------EEEEETTC
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE----EEEE-cCC-CCCEEEEEEcC-CCE------EEEEECcC
Confidence 35899999999999999999999999999999987654 2333 334 78999999999 777 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
+|++||+.+++++..+. |.+.|++++|+|++
T Consensus 80 ~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g------------------------------------------------ 110 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVF-VPGKITSIDTDASL------------------------------------------------ 110 (902)
T ss_dssp EEEEEETTTCSEEEEEE-CSSCEEEEECCTTC------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEc-CCCCEEEEEECCCC------------------------------------------------
Confidence 99999999999998886 77899999999998
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEe--------eccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCCceEE
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYH--------RSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
++|++|+.||.|++||+.++....+. ..+.+|.+.|.+++|+|+ +..|++|+.||.| +||+++++.+.
T Consensus 111 --~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~ 187 (902)
T 2oaj_A 111 --DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ 187 (902)
T ss_dssp --SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE
T ss_pred --CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE
Confidence 59999999999999999865432111 345789999999999996 4789999999999 99999998887
Q ss_pred EEEeecCC----------CCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEE--e---ec-----------
Q 003467 240 RITVGLGG----------LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA--H---SF----------- 292 (817)
Q Consensus 240 ~~~~~~~~----------~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~---~~----------- 292 (817)
.+...... ....|...|++++|+|+| .|++++.||.|++||+++++++.. + ..
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~ 267 (902)
T 2oaj_A 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS 267 (902)
T ss_dssp EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCC
T ss_pred EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCC
Confidence 77532000 012345789999999999 799999999999999999988764 2 11
Q ss_pred --CccCeeEEEEec----CC-CEEEEEccC-----CcEEEEEeecccCCCCCCCCCccccceE----EEeeccc-cCCCc
Q 003467 293 --HKGDVNALAAAP----SH-NRVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKW----IYVGSVR-AHTHD 355 (817)
Q Consensus 293 --h~~~v~~l~~s~----~~-~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~h~~~ 355 (817)
|...|.+++|++ ++ ..|++|+.| +.+.+|++....... .........+ .....+. .|.+.
T Consensus 268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS---ITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG---GCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc---ccchhhhhhhhcCccceEEEecCCCCc
Confidence 345799999964 43 456667665 378899864210000 0000000000 0111222 35566
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCC----c-------
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP----H------- 424 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~----~------- 424 (817)
|..+.+.+..+ |.-. ...+...+++++.|+.|++|++.+...... .
T Consensus 345 v~~~~~~~~~s-----p~~~------------------g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~ 401 (902)
T 2oaj_A 345 IVNILPIPRQS-----PYFA------------------GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR 401 (902)
T ss_dssp EEEEEECCSSC-----SHHH------------------HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBT
T ss_pred eEEEEECCCCC-----CCcC------------------CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccC
Confidence 77776641100 1000 001223788889999999999865421111 0
Q ss_pred -----------------------ccCCCCCCCceeeecceeecCCeEEEEEeCC--eEEEEEecccCCcccCCCCCCCCc
Q 003467 425 -----------------------EICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHAS 479 (817)
Q Consensus 425 -----------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~g~~~ 479 (817)
.....+...+...+..++|+|++.++++++. .+++|++..+....
T Consensus 402 ~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------- 471 (902)
T 2oaj_A 402 PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------- 471 (902)
T ss_dssp TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----------
T ss_pred CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC----------
Confidence 0001112223344566789999999987654 99999987653110
Q ss_pred cceeeeee------ecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCCC---------C---------------c-
Q 003467 480 TSLLVQVK------SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVG---------Q---------------G- 527 (817)
Q Consensus 480 ~~~~~~~~------~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~~---------~---------------~- 527 (817)
. ....+. ..+...|.+++|+|||++||++ .|++|++|++...... . .
T Consensus 472 ~-~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 N-ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp T-BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred C-ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 0 111111 2566789999999999999995 7899999999863100 0 0
Q ss_pred -------------eEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeee--eccCcccccccCC-C
Q 003467 528 -------------EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT--FTPCREEHDREIQ-P 591 (817)
Q Consensus 528 -------------~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~~~~~~-~ 591 (817)
-+. ....+.+|...|++++||||| +||+|+.|++|+|||+.+...+.. +.. +. .
T Consensus 551 ~~~~~~~~~~~~~g~~-~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~--------~~~g 620 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFM-PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIRE--------ISGA 620 (902)
T ss_dssp EECGGGCCTTCSEEEE-EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--------TCSS
T ss_pred ccccccCCCCCCCccc-eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhH--------hccc
Confidence 000 013456788899999999999 999999999999999987766542 211 11 2
Q ss_pred CCCceeEEEEc-----cCC---CEEEEEeCCCcEEEEEC---CCcceEEEEecC----CCCCeEEEE-ec----------
Q 003467 592 SEPPITKMFTS-----SDG---QWLAAVNCFGDVYIFNL---EIQRQHWFISRL----EGASVTAAG-FP---------- 645 (817)
Q Consensus 592 ~~~~i~~l~~s-----~dg---~~la~~~~dg~i~vwd~---~~~~~~~~~~~~----~~~~i~~l~-~s---------- 645 (817)
|...|++++|| ||| ++|++|+.|++|++||+ .+++....+... +.++|.+++ |+
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC
Confidence 89999999999 886 89999999999999999 787766555332 235677766 65
Q ss_pred ------------CCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEE---E------ECCCCCC
Q 003467 646 ------------PQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL---S------FSPSPSS 704 (817)
Q Consensus 646 ------------p~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l---~------f~p~~~~ 704 (817)
+ ++. +++ +.+..|++|++.++++ .+....|...+.++ . |++++ .
T Consensus 701 ~~~~~~l~~~~~~-~~~-~l~-~~~~~ir~~~~~~~k~-----------~~k~~~~~~~~~~v~~~~~~~~~~~~~~~-~ 765 (902)
T 2oaj_A 701 IPKMQNLSKGLCI-PGI-VLI-TGFDDIRLITLGKSKS-----------THKGFKYPLAATGLSYISTVEKNNDRKNL-T 765 (902)
T ss_dssp HHHHHGGGGTCCC-CEE-EEE-ECSSEEEEECTTCCCE-----------EEEECSSCEEEEEEEEEEEECSSSCEEEE-E
T ss_pred HHHHhccCCCCCC-CeE-EEE-EeccceEEEeCccccc-----------eeeEcccceeeeEEEEEEeccccccccCc-e
Confidence 3 333 333 3388999999999876 44445565666666 5 56653 2
Q ss_pred CEEEEEcCceEEEEEcC
Q 003467 705 SSVIIYSARAMCVIDFG 721 (817)
Q Consensus 705 ~~~~~~~~~~~~~~d~~ 721 (817)
..+.+..+..+.++++.
T Consensus 766 ~l~~~~~~g~i~~~s~p 782 (902)
T 2oaj_A 766 VIITLEINGHLRVFTIP 782 (902)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCcEEEEECc
Confidence 45566677777777764
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-54 Score=533.12 Aligned_cols=551 Identities=15% Similarity=0.174 Sum_probs=434.9
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.+.+.+|.+.|++++|||||++||+|+.||.|+|||+.+++ +...+.+| ...|.+++|+|++.. ..+++++
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~----~~l~sg~ 720 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK----LVHTYDEH-SEQVNCCHFTNKSNH----LLLATGS 720 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECC-SSCEEEEEECSSSSC----CEEEEEE
T ss_pred EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCC-CCcEEEEEEecCCCc----eEEEEEe
Confidence 34567999999999999999999999999999999999987 57788887 789999999997554 4599999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc-ccCCCCCCc----
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS-ESENDSDSD---- 160 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 160 (817)
.|++|++||+.+++++..+.+|...|.+++|+|++..+++++.++. ..+|+............ .........
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~---v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT---LRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE---EEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe---EEEEeCCCCcccceecccccccccCCccccc
Confidence 9999999999999999999999999999999999987776655443 22333211100000000 000000011
Q ss_pred --ccc-ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 003467 161 --ELH-EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 237 (817)
Q Consensus 161 --~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~ 237 (817)
.+. ....+++..+++++ ++.+.+||+.++..+. ....+|.+.|.+++|+|+++++++++.||.|++||+.++..
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA--EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEE--EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred cceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCcee--EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 111 12336677787776 6899999998776553 33458899999999999999999999999999999999998
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeE-----------------------------E
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-----------------------------L 287 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~-----------------------------~ 287 (817)
+..+. +|...|.+++|+|++ .+++++.||.|++||+.++.. +
T Consensus 875 ~~~~~--------~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 875 VADCR--------GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp EEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred eeecC--------CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 88887 799999999999999 799999999999999653100 0
Q ss_pred EE--------eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCcccee
Q 003467 288 QA--------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 359 (817)
Q Consensus 288 ~~--------~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 359 (817)
.. ...+...+.+++|+|+++++++|+.||.|++|++.++. ....+.+|...|.++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-----------------~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR-----------------VFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS-----------------CEEECCCCSSCCCCE
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-----------------eeeecccCCCceEEE
Confidence 00 11234679999999999999999999999999998877 566788999999999
Q ss_pred EeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeec
Q 003467 360 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH 439 (817)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (817)
+|+ |+++ +|++++.|+.|++|++.+..... ...+...+.
T Consensus 1010 ~~s---------~dg~------------------------~l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~v~ 1048 (1249)
T 3sfz_A 1010 QFT---------ADGK------------------------TLISSSEDSVIQVWNWQTGDYVF--------LQAHQETVK 1048 (1249)
T ss_dssp EEC---------SSSS------------------------CEEEECSSSBEEEEETTTTEEEC--------CBCCSSCEE
T ss_pred EEC---------CCCC------------------------EEEEEcCCCEEEEEECCCCceEE--------EecCCCcEE
Confidence 998 8876 99999999999999998765331 223456677
Q ss_pred ceeecCCeEEEEEeC-CeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEE
Q 003467 440 NTIFSHTSLLLVQYS-CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLF 517 (817)
Q Consensus 440 ~~~~s~~~~~l~~~~-~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~ 517 (817)
++.+++++.+++... +.+.+|++..+.. ......+...+.+++++|+|++++++ .++.+++|
T Consensus 1049 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~----------------~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRI----------------ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp EEEECSSSEEEEEESSSEEEEEETTTTCC----------------CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred EEEEcCCCcEEEEECCCcEEEEECCCCce----------------eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 899999988776554 4999999876542 12233456779999999999998885 77999999
Q ss_pred EeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee
Q 003467 518 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
++.. +..+ ..+.+|...|++++|+||+++|++++.||.|++||+.+++.+..+..... ......|...|+
T Consensus 1113 d~~~---~~~~-----~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~ 1182 (1249)
T 3sfz_A 1113 SFDL---LSPL-----HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVT 1182 (1249)
T ss_dssp CSSS---SSCS-----BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCC
T ss_pred ECCC---ccee-----eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEE
Confidence 9875 3332 45677888999999999999999999999999999999988877632110 011123889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcC
Q 003467 598 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 667 (817)
Q Consensus 598 ~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~ 667 (817)
+++|||||++|++++ |.|++||+.+++....+.. +...|++++|+| ++.+|++++.||.|++|++.
T Consensus 1183 ~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~-~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1183 DVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT-NGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC-SSCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred EEEECCCCCEEEECC--CeEEEEECCCCceeeeeec-cCCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 999999999999986 8999999999987655533 557899999999 99999999999999999874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-53 Score=482.94 Aligned_cols=493 Identities=14% Similarity=0.147 Sum_probs=406.5
Q ss_pred eeeeeeccCCCc-eEEEEECC--CCCeEEEEecCCcEEEEecCCCCC----CcEEEEEEcCCCCCcEEEEEEeecCCCCC
Q 003467 4 YRNSSIDWKPSP-VVALATSA--DDSQVAAAREDGSLEIWLVSPGTS----GWHCQLTVHGDPKSRISSLVWCHAGKMGL 76 (817)
Q Consensus 4 hr~r~~~~h~~~-I~~la~sp--dg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~g~~~~~V~~l~~s~~~~~~~ 76 (817)
...+.+.+|... |++++|+| ++++||+|+.||.|+|||+.++.. ...+...+.+| ...|.+++|+|++++..
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-cccEEEEEEeCCCCEEE
Confidence 456778999999 99999999 999999999999999999974400 01134455544 55666666666643200
Q ss_pred -------------------------------------CC--ceEEEeeCCCeEEEEECCCCeEEEEEeecCc---eEEEE
Q 003467 77 -------------------------------------PG--GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDF---SIWQM 114 (817)
Q Consensus 77 -------------------------------------~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~i~~~ 114 (817)
+. .+|++++.|+.|++||+.+++++..+..|.. .|.++
T Consensus 133 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 212 (615)
T ss_dssp EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred EeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence 00 1588899999999999999999999999999 99999
Q ss_pred eeecC-CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce
Q 003467 115 AVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 193 (817)
Q Consensus 115 ~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 193 (817)
+|+|+ + ++|++++.||.|++||+.+++.+
T Consensus 213 ~~~~~~~--------------------------------------------------~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 213 EFSPDSG--------------------------------------------------EFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp EECSTTC--------------------------------------------------CEEEEEETTCCEEEEETTTCCEE
T ss_pred EECCCCC--------------------------------------------------CEEEEEeCCCeEEEEECCCCCEe
Confidence 99999 7 48999999999999999877665
Q ss_pred eEeecc-C---CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEE
Q 003467 194 IYHRSL-P---RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS 269 (817)
Q Consensus 194 ~~~~~~-~---~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s 269 (817)
..+ . .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+.... ......+.++.+..+..+++
T Consensus 243 ---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 243 ---KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----QQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp ---EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----TCGGGCEEEEEEEETTEEEE
T ss_pred ---EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----CcccCceeEEEeCCCCeEEE
Confidence 555 5 899999999999 99999999999999999999999988887421 12357788888875558999
Q ss_pred EcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc
Q 003467 270 ADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 349 (817)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (817)
++.+|.|++||+.+++.+..+.+|...|.+++| |+ +++++.||.|++|++. . . .
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~--~-----------------~-~-- 368 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS--S-----------------M-H-- 368 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT--E-----------------E-E--
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch--h-----------------h-c--
Confidence 999999999999999999999999999999999 88 9999999999999876 2 2 2
Q ss_pred ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCC
Q 003467 350 RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 429 (817)
Q Consensus 350 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~ 429 (817)
..|...|.++++. ++. .|++++.|+.+++|++.......
T Consensus 369 ~~~~~~v~~~~~~----------~~~------------------------~l~~~~~d~~i~~~~~~~~~~~~------- 407 (615)
T 1pgu_A 369 QDHSNLIVSLDNS----------KAQ------------------------EYSSISWDDTLKVNGITKHEFGS------- 407 (615)
T ss_dssp CCCCSCEEEEECC----------STT------------------------CCEEEETTTEEEETTEEEEECSS-------
T ss_pred CcccCceEEEEEC----------CCc------------------------EEEEEeCCCCEEEEEcccCcccC-------
Confidence 7889999999983 332 89999999999999987654221
Q ss_pred CCCCceeeecceeecCCeEEEEEe-CCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE
Q 003467 430 PQRVPIHLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY 508 (817)
Q Consensus 430 ~~~~~~~~~~~~~~s~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~ 508 (817)
.+..++++|++.+++.. .+.+.+|++..+. .+..+. +...+.+++++ ++++++
T Consensus 408 -------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~--~~~l~~ 461 (615)
T 1pgu_A 408 -------QPKVASANNDGFTAVLTNDDDLLILQSFTGD---------------IIKSVR--LNSPGSAVSLS--QNYVAV 461 (615)
T ss_dssp -------CEEEEEECSSSEEEEEETTSEEEEEETTTCC---------------EEEEEE--CSSCEEEEEEC--SSEEEE
T ss_pred -------CceEEEEcCCCCEEEEeCCCceEEEeccCCc---------------eeeecc--cCCCceEEEEc--CCEEEE
Confidence 44578899999988874 4489999875443 233333 55789999999 778888
Q ss_pred E-c-CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccc
Q 003467 509 S-D-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD 586 (817)
Q Consensus 509 ~-~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 586 (817)
+ . ++.+++|++.. + . .....+..|...+++++|+||+++|++++.||.|++||+.+++.+..+.+.
T Consensus 462 ~~~~d~~i~~~~~~~---~-~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----- 529 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSD---L-E---VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----- 529 (615)
T ss_dssp EETTTSCEEEEETTE---E-E---EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-----
T ss_pred eecCCCeEEEEECCC---c-c---ccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-----
Confidence 5 5 89999999875 1 1 111456778889999999999999999999999999999999998887753
Q ss_pred ccCCCCCCceeEEEEcc----------CCCEEEEEeCCCcEEEEECCCc-ceEEEEecCCCCCeEEEEecCCCCCeEEEE
Q 003467 587 REIQPSEPPITKMFTSS----------DGQWLAAVNCFGDVYIFNLEIQ-RQHWFISRLEGASVTAAGFPPQNNNVLIIT 655 (817)
Q Consensus 587 ~~~~~~~~~i~~l~~s~----------dg~~la~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~ 655 (817)
|...|++++|+| ++++||+++.||.|++||++++ +....+ ..|...|++++|+| ++. |+++
T Consensus 530 -----h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~~v~~l~~s~-~~~-l~s~ 601 (615)
T 1pgu_A 530 -----RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLLWET-PST-LVSS 601 (615)
T ss_dssp -----CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEEEEE-TTE-EEEE
T ss_pred -----CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCccceEEEEEcC-CCC-eEEe
Confidence 788999999999 9999999999999999999998 444444 55778999999999 888 9999
Q ss_pred ecCCeEEEEEcCC
Q 003467 656 TSSNQVYVFDVEA 668 (817)
Q Consensus 656 ~~d~~i~vwd~~~ 668 (817)
+.|+.|++|+++.
T Consensus 602 ~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 602 GADACIKRWNVVL 614 (615)
T ss_dssp ETTSCEEEEEEC-
T ss_pred cCCceEEEEeeec
Confidence 9999999999975
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-50 Score=471.04 Aligned_cols=532 Identities=12% Similarity=0.138 Sum_probs=377.6
Q ss_pred EEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccc
Q 003467 54 TVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI 133 (817)
Q Consensus 54 ~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~ 133 (817)
...|| ...|++++|+|++++ ||+|+.||+|++||..+++....+. |..+|++++|+| +
T Consensus 12 ~~~gh-~~~V~~lafspdg~~------lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g------------- 69 (902)
T 2oaj_A 12 NKYGM-SSKPIAAAFDFTQNL------LAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-G------------- 69 (902)
T ss_dssp EEEEC-SSCEEEEEEETTTTE------EEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-T-------------
T ss_pred cccCC-CCCcEEEEECCCCCE------EEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-C-------------
Confidence 34466 789999999999988 9999999999999999888776654 788999999999 6
Q ss_pred cCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc
Q 003467 134 GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA 213 (817)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 213 (817)
++|++++.|+.|++||+.+++.+ ..+. |.+.|++++|+|
T Consensus 70 -------------------------------------~~L~S~s~D~~v~lWd~~~~~~~---~~~~-~~~~V~~v~~sp 108 (902)
T 2oaj_A 70 -------------------------------------IYLVVINAKDTVYVLSLYSQKVL---TTVF-VPGKITSIDTDA 108 (902)
T ss_dssp -------------------------------------TEEEEEETTCEEEEEETTTCSEE---EEEE-CSSCEEEEECCT
T ss_pred -------------------------------------CEEEEEECcCeEEEEECCCCcEE---EEEc-CCCCEEEEEECC
Confidence 38999999999999999877665 3443 668999999999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceEEEEEeec-C---CCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEE
Q 003467 214 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL-G---GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 214 dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~-~---~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~ 287 (817)
++++|++|+.||.|++||+.+++.. .+.... . ....+|...|.+++|+|++ .+++|+.||.| +||+++++.+
T Consensus 109 ~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 109 SLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp TCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 9999999999999999999988753 222100 0 1123688899999999974 79999999999 9999999999
Q ss_pred EEeecC------------------ccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEee--
Q 003467 288 QAHSFH------------------KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-- 347 (817)
Q Consensus 288 ~~~~~h------------------~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-- 347 (817)
..+..| ...|.+++|+|+|++|++++.||.|++||+.+++ .+.
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~-----------------~~~~r 249 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH-----------------MIMAR 249 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC-----------------EEEEE
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-----------------EEEEE
Confidence 888766 4779999999999999999999999999998765 222
Q ss_pred cc---c-------------cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC----
Q 003467 348 SV---R-------------AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD---- 407 (817)
Q Consensus 348 ~~---~-------------~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---- 407 (817)
.+ . .|...|.+++|++..+ |++. .+|++|+.|
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~-----pd~~-----------------------~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN-----PEYT-----------------------SLLISHKSISRGD 301 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS-----TTEE-----------------------EEEEEEECSTTSS
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCC-----CCCC-----------------------EEEEeCCCCCCCC
Confidence 11 1 1345688898863221 3321 378888766
Q ss_pred -CeEEEEeCCccccc---------------CCcccCCCCCCCceeeecceeecC------------CeEEEEEeCCeEEE
Q 003467 408 -TKLFAYCANEFTKF---------------SPHEICPAPQRVPIHLVHNTIFSH------------TSLLLVQYSCRLDI 459 (817)
Q Consensus 408 -g~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~s~------------~~~~l~~~~~~i~i 459 (817)
..+.+|++.....+ ........ .....+..+.+.+ ...+....++.+.+
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 37888885311000 00000000 0111222333222 23344455578999
Q ss_pred EEecccCCccc----CCCCCCCCccceeee---------------------eeecCCCCeEEEEecCCCcEEEEE-cCCc
Q 003467 460 LSVRLENNVES----RSSSGGHASTSLLVQ---------------------VKSKASRKIICSTISNSGMLFAYS-DHVK 513 (817)
Q Consensus 460 ~~~~~~~~~~~----~~~~~g~~~~~~~~~---------------------~~~~~~~~i~~~~~s~~g~~la~~-~~~~ 513 (817)
|++..+..... .....++...-.... ...++...+.+++|+|+|++|+++ .|++
T Consensus 379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dgt 458 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGS 458 (902)
T ss_dssp EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSE
T ss_pred EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCc
Confidence 99854321110 000111110000000 112233456678899999999985 7899
Q ss_pred eEEEEeecCCCC-CceEEEe--eecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCce----------------
Q 003467 514 PSLFELKKGKVG-QGEWIIN--KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL---------------- 574 (817)
Q Consensus 514 i~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~---------------- 574 (817)
|++|++....-. ...+.+. +....+|...|.+++|+||+++||+|+.||+|+|||+.+++.
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 999999763111 0111111 000125677899999999999999999999999999986631
Q ss_pred -----------------------------eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 003467 575 -----------------------------LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 625 (817)
Q Consensus 575 -----------------------------~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~ 625 (817)
+.++.+ |.+.|++++||||| +||+|+.|++|+|||+++.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-----------h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-----------NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-----------CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEc-----------CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 333444 99999999999999 9999999999999999887
Q ss_pred ceEEE--Ee---cCCCCCeEEEEec-----CCCC---CeEEEEecCCeEEEEEc---CCCccccchhcccCccCcchhcC
Q 003467 626 RQHWF--IS---RLEGASVTAAGFP-----PQNN---NVLIITTSSNQVYVFDV---EAKQLGEWSMQHTFVLPRRYQEF 689 (817)
Q Consensus 626 ~~~~~--~~---~~~~~~i~~l~~s-----p~d~---~~l~~~~~d~~i~vwd~---~~~~~~~ws~~~~~~~~~~~~~~ 689 (817)
..... +. ..|...|++++|+ | |+ .+|++++.|++|++||+ .++++ ...+.+|
T Consensus 607 ~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~-----------~~~~~~~ 674 (902)
T 2oaj_A 607 AIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKF-----------DVQLMDI 674 (902)
T ss_dssp EEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCE-----------EEEEEEE
T ss_pred eEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCcE-----------EEEecCc
Confidence 76432 11 1566789999999 8 74 89999999999999999 66664 3334444
Q ss_pred -----CCceeEEE-ECCCC-------------------CCCEEEEEcCceEEEEEcCC
Q 003467 690 -----PGEVIGLS-FSPSP-------------------SSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 690 -----~~~v~~l~-f~p~~-------------------~~~~~~~~~~~~~~~~d~~~ 722 (817)
.++|.++. |+.+. .+..+++.+.+.+-++++..
T Consensus 675 ~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~ 732 (902)
T 2oaj_A 675 TNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGK 732 (902)
T ss_dssp EECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTC
T ss_pred eecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCcc
Confidence 47888887 76220 12457787888888888754
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.5e-51 Score=479.01 Aligned_cols=485 Identities=14% Similarity=0.157 Sum_probs=394.5
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
|.+...+.+.+|++.|++++|||+|++||+|+.||.|+|||+.+++ ....+.+| ...|.+++|+|++++
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~----~~~~~~~~-~~~v~~~~~s~~~~~------ 69 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV----EVRSIQVT-ETPVRAGKFIARKNW------ 69 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEEEEECC-SSCEEEEEEEGGGTE------
T ss_pred CCcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc----eEEEEecC-CCcEEEEEEeCCCCE------
Confidence 6777889999999999999999999999999999999999998876 56777777 789999999999988
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|++++.||.|++||+.+++.+..+.+|...|++++|+|++
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~---------------------------------------- 109 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------------------------- 109 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS----------------------------------------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC----------------------------------------
Confidence 9999999999999999999999999999999999999998
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
++|++++.||.|++||+.++... ...+.+|...|.+++|+| ++..|++++.||.|++||+.++....
T Consensus 110 ----------~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 110 ----------PYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp ----------SEEEEEETTSEEEEEEGGGTSEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred ----------CEEEEEcCCCEEEEEECCCCceE--EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 58999999999999999865333 267788999999999999 88999999999999999999988888
Q ss_pred EEEeecCCCCCCCceeEEEeEEec--CC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLR--CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.+.. .+...+.+++|+| ++ .+++++.||.|++||..+++.+..+.+|...|.+++|+|++++|++++.||
T Consensus 178 ~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 250 (814)
T 3mkq_A 178 TLTT-------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (814)
T ss_dssp EEEC-------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EEec-------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 8773 3558899999998 77 799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccC
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL 396 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (817)
.|++|++.++. .+..+..|...+.+++++ |+++
T Consensus 251 ~v~vwd~~~~~-----------------~~~~~~~~~~~v~~~~~~---------~~~~--------------------- 283 (814)
T 3mkq_A 251 TLKIWNSSTYK-----------------VEKTLNVGLERSWCIATH---------PTGR--------------------- 283 (814)
T ss_dssp CEEEEETTTCS-----------------EEEEECCSSSSEEEEEEC---------TTCG---------------------
T ss_pred eEEEEECCCCc-----------------EEEEeecCCCcEEEEEEc---------cCCC---------------------
Confidence 99999998877 677888899999999997 7764
Q ss_pred CCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCe---EEEEEecccCCcccCCC
Q 003467 397 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR---LDILSVRLENNVESRSS 473 (817)
Q Consensus 397 ~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~---i~i~~~~~~~~~~~~~~ 473 (817)
..+++.+.++.+.+|++.... ..+.++|++..++..... ..++......... .
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~ 339 (814)
T 3mkq_A 284 --KNYIASGFDNGFTVLSLGNDE-------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE---V 339 (814)
T ss_dssp --GGEEEEEETTEEEEEECSCCS-------------------CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC---C
T ss_pred --ceEEEEEeCCCEEEEEcCCCC-------------------ceeEECCCCCEEEECcccccceeeeeeecccccc---c
Confidence 244555667778888875422 246677888888765431 1111111000000 0
Q ss_pred CCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCC
Q 003467 474 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS 553 (817)
Q Consensus 474 ~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~ 553 (817)
..+. ...............+.+++++|+|++++++.++.+.+|++.. .. . .+...+.+++|+||++
T Consensus 340 ~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~----~~---~------~~~~~i~~~~~spdg~ 405 (814)
T 3mkq_A 340 EQDE-PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA----WR---N------KAFGKCQDFVWGPDSN 405 (814)
T ss_dssp CSSS-CBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT----TE---E------EEEEECSEEEECTTSS
T ss_pred ccCc-cceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc----cc---c------cCCCceEEEEEeCCCC
Confidence 0000 0011111122334568899999999999998899999998642 11 1 1234688999999999
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC---CEEEEEeCCCcEEEEECCCcceEEE
Q 003467 554 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG---QWLAAVNCFGDVYIFNLEIQRQHWF 630 (817)
Q Consensus 554 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~~dg~i~vwd~~~~~~~~~ 630 (817)
+|++++.+|.|++|+ .+.+ |...+.+++|+||| ++|++++.|+.|++||+++++....
T Consensus 406 ~la~~~~~g~v~l~~--------~~~~-----------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 406 SYALIDETGQIKYYK--------NFKE-----------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp CEEEECTTCCEEEEE--------TTEE-----------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred eEEEEeCCCcEEEEE--------CCCC-----------ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 999999999999996 2333 67788999999999 6899999999999999999987766
Q ss_pred EecCCCCCeEEEEecCCCCCeEEEE------ecCCeEEEE
Q 003467 631 ISRLEGASVTAAGFPPQNNNVLIIT------TSSNQVYVF 664 (817)
Q Consensus 631 ~~~~~~~~i~~l~~sp~d~~~l~~~------~~d~~i~vw 664 (817)
+.. + ...++|+| |+++|+++ +.++.+.+|
T Consensus 467 ~~~-~---~~~v~~s~-dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 467 IDV-N---AKDVIWSD-NGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ESS-C---EEEEEECT-TSSEEEEEECCCSSCSCSEEEEE
T ss_pred Eec-C---CCEEEEcC-CCCEEEEEEcCcccCCceEEEEE
Confidence 643 2 23899999 99999999 555544444
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-46 Score=440.70 Aligned_cols=474 Identities=14% Similarity=0.156 Sum_probs=379.3
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccC
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
..+.+.+| .+.|.+++|+|++++ |++++.||.|++||+.+++.+..+.+|.++|.+++|+|++
T Consensus 5 ~~~~~~~h-~~~v~~i~~sp~~~~------la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------- 67 (814)
T 3mkq_A 5 IKKTFSNR-SDRVKGIDFHPTEPW------VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK---------- 67 (814)
T ss_dssp CEEEEEEE-CSCEEEEEECSSSSE------EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG----------
T ss_pred cceeeecC-CCceEEEEECCCCCE------EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC----------
Confidence 35677777 789999999999988 9999999999999999999999999999999999999998
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEE
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT 210 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 210 (817)
++|++++.||.|++||+.+++.+ ..+.+|.+.|.+++
T Consensus 68 ----------------------------------------~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 68 ----------------------------------------NWIIVGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIA 104 (814)
T ss_dssp ----------------------------------------TEEEEEETTSEEEEEETTTCCEE---EEEECCSSCEEEEE
T ss_pred ----------------------------------------CEEEEEeCCCeEEEEECCCCcEE---EEEecCCCCEEEEE
Confidence 59999999999999999877765 67788999999999
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCC-ceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeEE
Q 003467 211 WSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 211 ~s~dg~~l~s~~~dg~i~vwd~~~g-~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~ 287 (817)
|+|++++|++++.||.|++||+.++ .....+. +|...|.+++|+| ++ .+++++.||.|++||+.++...
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE--------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc--------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 9999999999999999999999987 5555555 6889999999999 66 7999999999999999988887
Q ss_pred EEeecCc-cCeeEEEEec--CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 288 QAHSFHK-GDVNALAAAP--SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 288 ~~~~~h~-~~v~~l~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
..+..+. ..+.+++|+| ++.+|++++.||.|++|++.++. .+..+..|...|.+++++
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----------------~~~~~~~~~~~v~~~~~~-- 237 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----------------CVATLEGHMSNVSFAVFH-- 237 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----------------EEEEEECCSSCEEEEEEC--
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------EEEEEcCCCCCEEEEEEc--
Confidence 7777655 8899999999 99999999999999999998876 677888999999999998
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
|++. +|++++.||.|++||+.+........ .+...+.+++++
T Consensus 238 -------~~~~------------------------~l~~~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~ 279 (814)
T 3mkq_A 238 -------PTLP------------------------IIISGSEDGTLKIWNSSTYKVEKTLN-------VGLERSWCIATH 279 (814)
T ss_dssp -------SSSS------------------------EEEEEETTSCEEEEETTTCSEEEEEC-------CSSSSEEEEEEC
T ss_pred -------CCCC------------------------EEEEEeCCCeEEEEECCCCcEEEEee-------cCCCcEEEEEEc
Confidence 7775 99999999999999998755333221 223467788999
Q ss_pred CCeE---EEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC--CceEEEEe
Q 003467 445 HTSL---LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH--VKPSLFEL 519 (817)
Q Consensus 445 ~~~~---~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~--~~i~l~~~ 519 (817)
|++. +....++.+.+|++... ...++++|+|+.++++.. ....++..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 280 PTGRKNYIASGFDNGFTVLSLGND----------------------------EPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp TTCGGGEEEEEETTEEEEEECSCC----------------------------SCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred cCCCceEEEEEeCCCEEEEEcCCC----------------------------CceeEECCCCCEEEECcccccceeeeee
Confidence 9885 44455568888876432 234668899998888533 11122222
Q ss_pred ecC-----CCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCC
Q 003467 520 KKG-----KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 594 (817)
Q Consensus 520 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (817)
... ..+.. .......+..+...+.+++|+|||++|++++ ++.+.+|++...... +.+
T Consensus 332 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----------------~~~ 393 (814)
T 3mkq_A 332 VIRGNEEVEQDEP-LSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----------------AFG 393 (814)
T ss_dssp ECCSCCCCCSSSC-BCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----------------EEE
T ss_pred ecccccccccCcc-ceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----------------CCC
Confidence 110 00000 0011122344455789999999999999998 899999997643322 345
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCC---CeEEEEecCCeEEEEEcCCCcc
Q 003467 595 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 595 ~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~---~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
.+++++|||||++||+++.+|.|++|+.- ..+...+.+++|+| ++ .+|++++.|+.|++||++++++
T Consensus 394 ~i~~~~~spdg~~la~~~~~g~v~l~~~~---------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 394 KCQDFVWGPDSNSYALIDETGQIKYYKNF---------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp ECSEEEECTTSSCEEEECTTCCEEEEETT---------EECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred ceEEEEEeCCCCeEEEEeCCCcEEEEECC---------CCccceEEcCCcCc-cceecceEEEEecCCEEEEEECCcCcE
Confidence 68899999999999999999999999632 12445788999999 87 6889999999999999999876
Q ss_pred ccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEE------cCceEEEEEcC
Q 003467 672 GEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY------SARAMCVIDFG 721 (817)
Q Consensus 672 ~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~------~~~~~~~~d~~ 721 (817)
...+..|.. .+.|+|+ +..+++. +...++++..+
T Consensus 464 -----------~~~~~~~~~---~v~~s~d--g~~la~~~~~~~~~~~~~~~~~~~ 503 (814)
T 3mkq_A 464 -----------VRRIDVNAK---DVIWSDN--GELVMIVNTNSNGDEASGYTLLFN 503 (814)
T ss_dssp -----------EEEESSCEE---EEEECTT--SSEEEEEECCCSSCSCSEEEEEEC
T ss_pred -----------EEEEecCCC---EEEEcCC--CCEEEEEEcCcccCCceEEEEEec
Confidence 445555543 9999998 4667776 56667766554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-44 Score=381.30 Aligned_cols=287 Identities=17% Similarity=0.280 Sum_probs=266.8
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
..+.+|.++|++++|+|++.+||+|+.||+|+|||+.+++ +..++.+| ...|.+++|+|++++ |++++.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~----~~~~l~~h-~~~V~~v~~~~~~~~------l~sgs~ 170 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGH-TDSVQDISFDHSGKL------LASCSA 170 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCC-SSCEEEEEECTTSSE------EEEEET
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEEecc-CCcEEEEEEcCCCCE------EEEEeC
Confidence 3467999999999999999999999999999999999987 46788887 789999999999988 999999
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
|++|++||+.+++++..+.+|...|.+++|+|++
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~---------------------------------------------- 204 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---------------------------------------------- 204 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS----------------------------------------------
T ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC----------------------------------------------
Confidence 9999999999999999999999999999999998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
++|++|+.|+.|++||+.++..+ ..+.+|...|.+++|+|++.+|++|+.|++|++||+.+++....+.
T Consensus 205 ----~~l~s~s~D~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---- 273 (410)
T 1vyh_C 205 ----DHIVSASRDKTIKMWEVQTGYCV---KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---- 273 (410)
T ss_dssp ----SEEEEEETTSEEEEEETTTCCEE---EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred ----CEEEEEeCCCeEEEEECCCCcEE---EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec----
Confidence 48999999999999999877665 7788999999999999999999999999999999999999888876
Q ss_pred CCCCCCceeEEEeEEecC--------------------C-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecC
Q 003467 247 GLGSGPELCIWSLLSLRC--------------------G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~--------------------~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
.|...|.+++|+|+ + .|++|+.|+.|++||+++++++..+.+|...|.+++|+|+
T Consensus 274 ----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 349 (410)
T 1vyh_C 274 ----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349 (410)
T ss_dssp ----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred ----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCC
Confidence 68899999999985 3 6999999999999999999999999999999999999999
Q ss_pred CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCC
Q 003467 306 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 385 (817)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (817)
+++|++++.|+.|++||+.+++ .+..+..|...|.+++|+ |++.
T Consensus 350 g~~l~s~s~D~~i~vwd~~~~~-----------------~~~~~~~h~~~v~~l~~~---------~~~~---------- 393 (410)
T 1vyh_C 350 GKFILSCADDKTLRVWDYKNKR-----------------CMKTLNAHEHFVTSLDFH---------KTAP---------- 393 (410)
T ss_dssp SSCEEEEETTTEEEEECCTTSC-----------------CCEEEECCSSCEEEEEEC---------SSSS----------
T ss_pred CCEEEEEeCCCeEEEEECCCCc-----------------eEEEEcCCCCcEEEEEEc---------CCCC----------
Confidence 9999999999999999998776 567788999999999998 7775
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEeC
Q 003467 386 IDFSYHKWAHLGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 386 ~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~ 415 (817)
+|++|+.|+.|++|+.
T Consensus 394 --------------~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 --------------YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp --------------CEEEEETTSEEEEEC-
T ss_pred --------------EEEEEeCCCcEEEEeC
Confidence 9999999999999986
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=361.71 Aligned_cols=289 Identities=23% Similarity=0.330 Sum_probs=263.7
Q ss_pred eeeccCCCceEEEEECCC----CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 7 SSIDWKPSPVVALATSAD----DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~spd----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
+...+|.++|.+++|+|+ +.+||+|+.|++|+|||+..++. .+...+.|| ...|.+++|++++.+ ++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~--~~~~~l~gh-~~~v~~~~~~~~~~~------l~ 96 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL--DLQWSLEGH-QLGVVSVDISHTLPI------AA 96 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE--EEEEEECCC-SSCEEEEEECSSSSE------EE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe--eeeeeeccC-CCCEEEEEECCCCCE------EE
Confidence 445799999999999985 67999999999999999987642 234567777 789999999999987 99
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+++.|++|++||+.+++++..+..+...+++++|+|++
T Consensus 97 s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg------------------------------------------ 134 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS------------------------------------------ 134 (321)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS------------------------------------------
T ss_pred EEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC------------------------------------------
Confidence 99999999999999999999999999999999999998
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
++|++|+.||.|++|++.++... ..+..|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.
T Consensus 135 --------~~l~~g~~dg~v~i~~~~~~~~~---~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 203 (321)
T 3ow8_A 135 --------QYLATGTHVGKVNIFGVESGKKE---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203 (321)
T ss_dssp --------SEEEEECTTSEEEEEETTTCSEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred --------CEEEEEcCCCcEEEEEcCCCcee---EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 59999999999999999877655 6677888899999999999999999999999999999999888886
Q ss_pred eecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
+|...|.+++|+|++ .|++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 204 --------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 204 --------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275 (321)
T ss_dssp --------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 688999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
|+.++. ++..+..|...|.+++|+ |+++ +|
T Consensus 276 d~~~~~-----------------~~~~~~~h~~~v~~v~~s---------~~g~------------------------~l 305 (321)
T 3ow8_A 276 DVGTRT-----------------CVHTFFDHQDQVWGVKYN---------GNGS------------------------KI 305 (321)
T ss_dssp ETTTTE-----------------EEEEECCCSSCEEEEEEC---------TTSS------------------------EE
T ss_pred eCCCCE-----------------EEEEEcCCCCcEEEEEEC---------CCCC------------------------EE
Confidence 998877 788889999999999998 7776 99
Q ss_pred EEecCCCeEEEEeC
Q 003467 402 ISAGDDTKLFAYCA 415 (817)
Q Consensus 402 ~s~~~dg~i~~~~~ 415 (817)
++++.|+.|++||.
T Consensus 306 ~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 306 VSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTCCEEEEEC
T ss_pred EEEeCCCeEEEEeC
Confidence 99999999999996
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.6e-43 Score=356.34 Aligned_cols=275 Identities=13% Similarity=0.186 Sum_probs=250.7
Q ss_pred CCceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 1 MPIYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 1 ~~~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
|.+.-.+.+.+|.+.|++++|||++++||+|+.||.|+|||+.++. ....+.+| ...|.+++|+|++++
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~------ 69 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV----EVRSIQVT-ETPVRAGKFIARKNW------ 69 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE----EEEEEECC-SSCEEEEEEEGGGTE------
T ss_pred CcceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----eeEEeecc-CCcEEEEEEeCCCCE------
Confidence 5666778899999999999999999999999999999999999876 56777777 789999999999988
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|++++.|++|++||+.+++++..+.+|...|.+++|+|++
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------------------------- 109 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------------------------- 109 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS----------------------------------------
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC----------------------------------------
Confidence 9999999999999999999999999999999999999998
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
++|++|+.||.|++||+.++..+. ..+.+|...|.+++|+| ++.+|++|+.|++|++||+.++....
T Consensus 110 ----------~~l~sgs~D~~v~lWd~~~~~~~~--~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~ 177 (304)
T 2ynn_A 110 ----------PYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (304)
T ss_dssp ----------SEEEEEETTSCEEEEEGGGTTEEE--EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred ----------CEEEEECCCCeEEEEECCCCcchh--hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 599999999999999998664442 67889999999999999 67899999999999999999888777
Q ss_pred EEEeecCCCCCCCceeEEEeEEec--CC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLR--CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.+.. ++...+..+.|.| ++ .|++++.|++|++||+++++++..+.+|...|.+++|+|++++|++++.||
T Consensus 178 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 178 TLTT-------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (304)
T ss_dssp EEEC-------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecc-------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Confidence 7763 4667888999986 55 799999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.|++||..+.+ ....+..|...+.++++.
T Consensus 251 ~i~iWd~~~~~-----------------~~~~~~~~~~~~~~~~~~ 279 (304)
T 2ynn_A 251 TLKIWNSSTYK-----------------VEKTLNVGLERSWCIATH 279 (304)
T ss_dssp CEEEEETTTCC-----------------EEEEECCSSSSEEEEEEC
T ss_pred eEEEEECCCCc-----------------eeeeccCCCccEEEEEEC
Confidence 99999998877 778888999999999987
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-42 Score=360.36 Aligned_cols=289 Identities=16% Similarity=0.215 Sum_probs=262.6
Q ss_pred ceeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 3 IYRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 3 ~hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
.+..+.+.+|.+.|++++|+||+++||+|+.||+|+|||+.+++ ....+..| ...|.+++|+|++++ |+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~-~~~v~~~~~s~~~~~------l~ 113 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLR-SSWVMTCAYAPSGNY------VA 113 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECS-SSCEEEEEECTTSSE------EE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecC-CccEEEEEECCCCCE------EE
Confidence 34556789999999999999999999999999999999999887 56777777 789999999999988 99
Q ss_pred EeeCCCeEEEEECCCC----eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 83 SSSIDGSVSEWDLYDL----KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+++.|+.|++||+.++ +....+.+|.+.|.+++|++++
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------------------- 155 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-------------------------------------- 155 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--------------------------------------
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--------------------------------------
Confidence 9999999999999875 4567788999999999999987
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
.+++++.|+.|++||+.++..+ ..+.+|.+.|.+++|+|++++|++|+.|+.|++||++++..+
T Consensus 156 -------------~l~s~s~d~~i~~wd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 156 -------------QIVTSSGDTTCALWDIETGQQT---TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp -------------EEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred -------------cEEEEECCCcEEEEECCCCcEE---EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE
Confidence 7999999999999999876655 778899999999999999999999999999999999999998
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
..+. +|...|.+++|+|++ .|++++.||+|++||+++++.+..+.. +...|.+++|+|++++|++|+.|
T Consensus 220 ~~~~--------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 220 QTFT--------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp EEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEEc--------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence 8886 789999999999999 799999999999999999988877653 33579999999999999999999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
+.|++||+.+.. .+..+.+|...|.+++|+ |+++
T Consensus 292 ~~i~vwd~~~~~-----------------~~~~~~~h~~~v~~~~~s---------~dg~-------------------- 325 (340)
T 1got_B 292 FNCNVWDALKAD-----------------RAGVLAGHDNRVSCLGVT---------DDGM-------------------- 325 (340)
T ss_dssp SEEEEEETTTCC-----------------EEEEEECCSSCEEEEEEC---------TTSS--------------------
T ss_pred CeEEEEEcccCc-----------------EeeEeecCCCcEEEEEEc---------CCCC--------------------
Confidence 999999998776 677889999999999998 8876
Q ss_pred CCCcEEEEecCCCeEEEEe
Q 003467 396 LGVPMLISAGDDTKLFAYC 414 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~ 414 (817)
+|++|+.|+.|++||
T Consensus 326 ----~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 ----AVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CEEEEETTSCEEEEC
T ss_pred ----EEEEEcCCccEEecC
Confidence 999999999999996
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=351.15 Aligned_cols=309 Identities=19% Similarity=0.282 Sum_probs=256.4
Q ss_pred eeeeccCCC-ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 6 NSSIDWKPS-PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 6 ~r~~~~h~~-~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
.+-+.+|+. .|.+++|||||++||+|+.|++|+|||+.++. +.+...+...|...|.+++|+|++++ |+++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~g~~------l~s~ 79 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVRKVAWSPCGNY------LASA 79 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEEEEEECTTSSE------EEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEEEEEECCCCCE------EEEE
Confidence 445678998 99999999999999999999999999998764 22333443334899999999999988 9999
Q ss_pred eCCCeEEEEECCCC--eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 85 SIDGSVSEWDLYDL--KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 85 ~~d~~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+.|++|++||+.++ +++..+.+|...|.+++|+|++
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------------------------------------ 117 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG------------------------------------------ 117 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS------------------------------------------
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC------------------------------------------
Confidence 99999999999876 4678899999999999999998
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE--EE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI--YR 240 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~--~~ 240 (817)
++|++|+.|+.|++||+.++........+.+|...|.+++|+|++++|++|+.|+.|++||..+++.. ..
T Consensus 118 --------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~ 189 (345)
T 3fm0_A 118 --------NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189 (345)
T ss_dssp --------SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred --------CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence 59999999999999999877666666788899999999999999999999999999999999887644 33
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC---------------CeEEEEeec-CccCeeEEEEe
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH---------------GTLLQAHSF-HKGDVNALAAA 303 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~---------------~~~~~~~~~-h~~~v~~l~~s 303 (817)
+. +|...|++++|+|++ .|++++.||+|++||... .+++..+.+ |...|.+++|+
T Consensus 190 ~~--------~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 190 LE--------GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp EC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred ec--------CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 43 789999999999999 799999999999999632 234455555 88999999999
Q ss_pred cCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEE-EeeccccCCCccceeEeecccCCCCCCCccccccccCC
Q 003467 304 PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI-YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 304 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
|++..|++++.|+.|++|+........ ...+. ......+|...|.+++|+ |++.
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~---------~~~~~~~~~~~~~h~~~V~~v~~~---------p~~~------- 316 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQ---------QPTFSLTAHLHQAHSQDVNCVAWN---------PKEP------- 316 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTT---------SCCEEEEEEETTSSSSCEEEEEEC---------SSST-------
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcc---------eeeEEEEeeecccccCcEeEeEEe---------CCCc-------
Confidence 999999999999999999987654211 01111 223457899999999998 6652
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEeCCccccc
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~ 421 (817)
.+|++|+.||.|++|++.+.+.+
T Consensus 317 ----------------~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 317 ----------------GLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp ----------------TEEEEEETTSCEEEEEECC----
T ss_pred ----------------eEEEEcCCCCcEEEEEecCCCCc
Confidence 38999999999999999876643
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-41 Score=344.34 Aligned_cols=297 Identities=20% Similarity=0.277 Sum_probs=259.5
Q ss_pred eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC
Q 003467 99 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD 178 (817)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 178 (817)
.....+.+|.+.|++++|+|++.. ++.+|++|+.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~----------------------------------------------~~~~l~tgs~ 56 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKE----------------------------------------------NSETVVTGSL 56 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-----------------------------------------------------CEEEEEET
T ss_pred heeeecccCCCcEEEEEEecCCCC----------------------------------------------CCCEEEEEcC
Confidence 334566789999999999987521 1148999999
Q ss_pred CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEE
Q 003467 179 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 258 (817)
Q Consensus 179 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~ 258 (817)
|+.|+||++..+ .......+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+. .+...+++
T Consensus 57 D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--------~~~~~~~~ 127 (321)
T 3ow8_A 57 DDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID--------AGPVDAWT 127 (321)
T ss_dssp TSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCTTCCCC
T ss_pred CCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe--------CCCccEEE
Confidence 999999999744 344446789999999999999999999999999999999999999998887 57778899
Q ss_pred eEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCc
Q 003467 259 LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 259 v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
++|+|++ .|++++.+|.|++||+++++....+..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---------- 197 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---------- 197 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------
Confidence 9999999 79999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+.+|...|.+++|+ |+++ +|++|+.|+.|++||+..
T Consensus 198 -------~~~~~~~h~~~v~~l~~s---------pd~~------------------------~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 198 -------LLHTLEGHAMPIRSLTFS---------PDSQ------------------------LLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp -------EEEEECCCSSCCCEEEEC---------TTSC------------------------EEEEECTTSCEEEEETTT
T ss_pred -------EEEEEcccCCceeEEEEc---------CCCC------------------------EEEEEcCCCeEEEEECCC
Confidence 677888999999999998 7776 999999999999999864
Q ss_pred ccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEE
Q 003467 418 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 497 (817)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 497 (817)
..
T Consensus 238 ~~------------------------------------------------------------------------------ 239 (321)
T 3ow8_A 238 AN------------------------------------------------------------------------------ 239 (321)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred EecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeee
Q 003467 498 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT 577 (817)
Q Consensus 498 ~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~ 577 (817)
.. ..+.+|...|.+++|+|++++|++++.|++|++||+.+++++.+
T Consensus 240 -----------------------------~~-----~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 240 -----------------------------LA-----GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp -----------------------------EE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred -----------------------------ee-----EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 00 11234555799999999999999999999999999999999999
Q ss_pred eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECC
Q 003467 578 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE 623 (817)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~ 623 (817)
+.+ |...|.+++|+|+|++|++++.||.|+|||+.
T Consensus 286 ~~~-----------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 286 FFD-----------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECC-----------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EcC-----------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 988 89999999999999999999999999999963
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-41 Score=360.29 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=266.8
Q ss_pred EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 101 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 101 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
...+.+|..+|++++|+|++ ++|++|+.||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~--------------------------------------------------~~l~s~s~Dg 130 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVF--------------------------------------------------SVMVSASEDA 130 (410)
T ss_dssp SCEEECCSSCEEEEEECSSS--------------------------------------------------SEEEEEESSS
T ss_pred eEeecccCCcEEEEEEcCCC--------------------------------------------------CEEEEEeCCC
Confidence 56788999999999999998 5999999999
Q ss_pred cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeE
Q 003467 181 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 260 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (817)
.|+|||+.++... +.+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+. +|...|.+++
T Consensus 131 ~i~vwd~~~~~~~---~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--------~h~~~V~~v~ 199 (410)
T 1vyh_C 131 TIKVWDYETGDFE---RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--------GHDHNVSSVS 199 (410)
T ss_dssp CEEEEETTTCCCC---EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC--------CCSSCEEEEE
T ss_pred eEEEEECCCCcEE---EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc--------CCCCCEEEEE
Confidence 9999999877665 7889999999999999999999999999999999999998887776 7899999999
Q ss_pred EecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccc
Q 003467 261 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV 339 (817)
Q Consensus 261 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 339 (817)
|+|++ .|++++.|++|++||++++.++..+.+|...|.+++++|++++|++++.|+.|++|++.++.
T Consensus 200 ~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------------ 267 (410)
T 1vyh_C 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------------ 267 (410)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------------
Confidence 99999 79999999999999999999999999999999999999999999999999999999998876
Q ss_pred cceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 340 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
....+..|...|.+++|+ |++. +
T Consensus 268 -----~~~~~~~h~~~v~~~~~~---------~~~~------------------------~------------------- 290 (410)
T 1vyh_C 268 -----CKAELREHRHVVECISWA---------PESS------------------------Y------------------- 290 (410)
T ss_dssp -----EEEEECCCSSCEEEEEEC---------CSCG------------------------G-------------------
T ss_pred -----eeeEecCCCceEEEEEEc---------Cccc------------------------c-------------------
Confidence 666778888888888876 4432 0
Q ss_pred ccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEe
Q 003467 420 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 499 (817)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 499 (817)
T Consensus 291 -------------------------------------------------------------------------------- 290 (410)
T 1vyh_C 291 -------------------------------------------------------------------------------- 290 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeec
Q 003467 500 SNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT 579 (817)
Q Consensus 500 s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 579 (817)
...... .+.. ......++.+|++|+.|++|++||+.+++.+.++.
T Consensus 291 ------~~~~~~------------~~~~-----------------~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 291 ------SSISEA------------TGSE-----------------TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp ------GGGGGC------------CSCC------------------------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ------cchhhh------------cccc-----------------ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 000000 0000 00122357899999999999999999999999999
Q ss_pred cCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 580 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 580 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
+ |...|++++|+|+|++|++++.||.|++||+.+++....+. .|...|++++|+| ++.+|++++.|+
T Consensus 336 ~-----------h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~~~l~sgs~D~ 402 (410)
T 1vyh_C 336 G-----------HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHK-TAPYVVTGSVDQ 402 (410)
T ss_dssp C-----------CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECS-SSSCEEEEETTS
T ss_pred C-----------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcC-CCCEEEEEeCCC
Confidence 8 89999999999999999999999999999999998777774 4667999999999 999999999999
Q ss_pred eEEEEEcC
Q 003467 660 QVYVFDVE 667 (817)
Q Consensus 660 ~i~vwd~~ 667 (817)
+|++|++.
T Consensus 403 ~i~vW~~r 410 (410)
T 1vyh_C 403 TVKVWECR 410 (410)
T ss_dssp EEEEEC--
T ss_pred cEEEEeCC
Confidence 99999863
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6e-41 Score=349.34 Aligned_cols=288 Identities=16% Similarity=0.210 Sum_probs=259.3
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
..+.+.+|.+.|++++|+||+++||+|+.||+|+|||..+++ ....+..| ...|.+++|+|++.+ |+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~-~~~v~~~~~sp~g~~------lasg 124 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----KEHAVTMP-CTWVMACAYAPSGCA------IACG 124 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECS-SSCCCEEEECTTSSE------EEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----cceEEecC-CCCEEEEEECCCCCE------EEEe
Confidence 456789999999999999999999999999999999998877 46666666 678999999999988 9999
Q ss_pred eCCCeEEEEECCCC------eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 85 SIDGSVSEWDLYDL------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 85 ~~d~~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+.|+.+++|++... .....+..|...|.+++|+|++
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------------------- 166 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------------------------------- 166 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--------------------------------------
T ss_pred eCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC--------------------------------------
Confidence 99999999998643 3456778899999999999998
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc--CCCEEEEeeCCCcEEEEECCCCc
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGY 236 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--dg~~l~s~~~dg~i~vwd~~~g~ 236 (817)
..|++++.|+.|++||+.++..+ ..+.+|...|.+++|+| +|++|++|+.||.|++||+++++
T Consensus 167 ------------~~l~t~s~D~~v~lwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 167 ------------MQILTASGDGTCALWDVESGQLL---QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp ------------SEEEEEETTSEEEEEETTTCCEE---EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred ------------CEEEEEeCCCcEEEEeCCCCeEE---EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 48999999999999999877665 77889999999999987 57899999999999999999999
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecC--ccCeeEEEEecCCCEEEEEc
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~~~~ 313 (817)
.+..+. .|...|.+++|+|++ .|++++.|++|++||+++++.+..+..+ ...+.+++|+|++++|++++
T Consensus 232 ~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 232 CVQAFE--------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEec--------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 988886 689999999999999 7999999999999999998887777543 34789999999999999999
Q ss_pred cCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccc
Q 003467 314 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 393 (817)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
.|+.|++||+.++. .+..+.+|...|.+++|+ |+++
T Consensus 304 ~d~~i~vwd~~~~~-----------------~~~~l~~h~~~v~~l~~s---------pdg~------------------ 339 (354)
T 2pbi_B 304 NDYTINVWDVLKGS-----------------RVSILFGHENRVSTLRVS---------PDGT------------------ 339 (354)
T ss_dssp TTSCEEEEETTTCS-----------------EEEEECCCSSCEEEEEEC---------TTSS------------------
T ss_pred CCCcEEEEECCCCc-----------------eEEEEECCCCcEEEEEEC---------CCCC------------------
Confidence 99999999998776 677889999999999998 8886
Q ss_pred ccCCCcEEEEecCCCeEEEEe
Q 003467 394 AHLGVPMLISAGDDTKLFAYC 414 (817)
Q Consensus 394 ~~~~~~~l~s~~~dg~i~~~~ 414 (817)
+|++|+.|+.|++|+
T Consensus 340 ------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 ------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------CEEEEETTSEEEEEC
T ss_pred ------EEEEEcCCCCEEecC
Confidence 999999999999995
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-40 Score=344.81 Aligned_cols=292 Identities=17% Similarity=0.217 Sum_probs=258.2
Q ss_pred CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 98 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
.+...++.+|.+.|++++|+|++ ++|++|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~--------------------------------------------------~~l~s~s 74 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDS--------------------------------------------------RLLLSAS 74 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTS--------------------------------------------------SEEEEEE
T ss_pred chhheeecCCCCceEEEEECCCC--------------------------------------------------CEEEEEe
Confidence 45678899999999999999998 5999999
Q ss_pred CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc----eEEEEEeecCCCCCCCc
Q 003467 178 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPE 253 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~----~~~~~~~~~~~~~~~~~ 253 (817)
.||.|+|||+.++..+ ..+..|...|.+++|+|++++|++|+.|+.|++||+.++. ....+. +|.
T Consensus 75 ~Dg~v~iWd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~--------~h~ 143 (340)
T 1got_B 75 QDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA--------GHT 143 (340)
T ss_dssp TTTEEEEEETTTCCEE---EEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE--------CCS
T ss_pred CCCcEEEEECCCCCcc---eEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec--------CCC
Confidence 9999999999877665 6778899999999999999999999999999999998764 333444 688
Q ss_pred eeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCC
Q 003467 254 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 333 (817)
Q Consensus 254 ~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 333 (817)
..|.++.|++++.+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+.++.
T Consensus 144 ~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~------ 217 (340)
T 1got_B 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------ 217 (340)
T ss_dssp SCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------
T ss_pred ccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 003467 334 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY 413 (817)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~ 413 (817)
....+.+|...|.+++|+ |+++ +|++|+.|+.|++|
T Consensus 218 -----------~~~~~~~h~~~v~~v~~~---------p~~~------------------------~l~s~s~d~~v~iw 253 (340)
T 1got_B 218 -----------CRQTFTGHESDINAICFF---------PNGN------------------------AFATGSDDATCRLF 253 (340)
T ss_dssp -----------EEEEECCCSSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEE
T ss_pred -----------eEEEEcCCcCCEEEEEEc---------CCCC------------------------EEEEEcCCCcEEEE
Confidence 677889999999999998 7775 99999999999999
Q ss_pred eCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCC
Q 003467 414 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 493 (817)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 493 (817)
|+...... .
T Consensus 254 d~~~~~~~--------------------------------------------------------------~--------- 262 (340)
T 1got_B 254 DLRADQEL--------------------------------------------------------------M--------- 262 (340)
T ss_dssp ETTTTEEE--------------------------------------------------------------E---------
T ss_pred ECCCCcEE--------------------------------------------------------------E---------
Confidence 98642100 0
Q ss_pred eEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCc
Q 003467 494 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 573 (817)
Q Consensus 494 i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~ 573 (817)
. .....+...+.+++|+|++++|++|+.||.|++||+.+++
T Consensus 263 ----------------------~-----------------~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 263 ----------------------T-----------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp ----------------------E-----------------ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ----------------------E-----------------EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 0 0011112258899999999999999999999999999999
Q ss_pred eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 574 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
.+.++.+ |...|++++|+|||++||+|+.||.|+|||
T Consensus 304 ~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 304 RAGVLAG-----------HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeeEeec-----------CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999988 899999999999999999999999999996
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.4e-42 Score=358.98 Aligned_cols=292 Identities=17% Similarity=0.197 Sum_probs=239.9
Q ss_pred ccCCCceEEEEECCCCCeEEEEec------CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 10 DWKPSPVVALATSADDSQVAAARE------DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~------dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
..|...|++++|||||++||+|+. |+.|++|+..++...........+| ...|.+++|+|++. +++
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~-------~l~ 110 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKG-------ILV 110 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTE-------EEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCC-------EEE
Confidence 468999999999999999999987 7789999988776433233344455 67899999999975 677
Q ss_pred eeCCCeEEEEECCCCeEE----EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 84 SSIDGSVSEWDLYDLKQK----IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
++.||+|++||+.+++.. ....+|...|.+++|+|++
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------------------------------- 151 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--------------------------------------- 151 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS---------------------------------------
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---------------------------------------
Confidence 889999999999988755 3345789999999999998
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceE
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
++|++|+.||.|++||+.++..+ ..+.+|...|.+++|+|++. ++++++.||.|++||+++++..
T Consensus 152 -----------~~l~sgs~dg~v~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 152 -----------TQAVSGGKDFSVKVWDLSQKAVL---KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp -----------SEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred -----------CEEEEEeCCCeEEEEECCCCcEE---EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 59999999999999999876655 77889999999999999985 7899999999999999998877
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC-CEEEEEccC
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSD 315 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~~d 315 (817)
..+.. ..+...+.+++|+|++ .|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ ++|++++.|
T Consensus 218 ~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 218 TRIDF------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp CBCCC------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeee------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence 66542 1467789999999986 68899999999999999999999999999999999999987 578899999
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCC-ccccccccCCCCCccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP-EDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
++|++||+.+++ .+ ...+|...|++++|+ | +++
T Consensus 292 ~~i~iwd~~~~~-----------------~~-~~~~H~~~V~~vafs---------P~d~~------------------- 325 (357)
T 4g56_B 292 CTVAVLDADFSE-----------------VF-RDLSHRDFVTGVAWS---------PLDHS------------------- 325 (357)
T ss_dssp SCEEEECTTSCE-----------------EE-EECCCSSCEEEEEEC---------SSSTT-------------------
T ss_pred CEEEEEECCCCc-----------------Ee-EECCCCCCEEEEEEe---------CCCCC-------------------
Confidence 999999998765 33 345799999999997 6 454
Q ss_pred cCCCcEEEEecCCCeEEEEeCCccc
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+|++++.|+.|++|++....
T Consensus 326 -----~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 326 -----KFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp -----EEEEEETTSCEEEEECC---
T ss_pred -----EEEEEcCCCeEEEEECCCCC
Confidence 99999999999999997543
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=349.23 Aligned_cols=290 Identities=20% Similarity=0.242 Sum_probs=239.5
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCC--------CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSP--------GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~--------~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
..|+..|.+++|||||++||+++ |+++++||... ......+.... .+ ...|.+++|+|++. |
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~s~d~~-------l 96 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV-QT-EAGVADLTWVGERG-------I 96 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-EE-SSCEEEEEEETTTE-------E
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-cc-CCCEEEEEEeCCCe-------E
Confidence 35678899999999999999887 67888887321 00000111111 12 46799999999853 8
Q ss_pred EEeeCCCeEEEEECCCCeEEEE----EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 82 FSSSIDGSVSEWDLYDLKQKIV----LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
++++.||+|++||+.+++.+.. +.+|...|++++|+|++
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg------------------------------------- 139 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG------------------------------------- 139 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-------------------------------------
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-------------------------------------
Confidence 8999999999999999876543 44899999999999998
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCc
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGY 236 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~ 236 (817)
++|++|+.||.|++||+.++..+ ..+.+|.+.|.+++|+|++. +|++++.|++|++||+++++
T Consensus 140 -------------~~l~sgs~d~~i~iwd~~~~~~~---~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 140 -------------TQAVSGSKDICIKVWDLAQQVVL---SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred -------------CEEEEEeCCCeEEEEECCCCcEE---EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence 59999999999999999877665 78899999999999999985 78999999999999999999
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC-CEEEEEc
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTG 313 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~~~~ 313 (817)
....+... .+...+.+++|+|++ .|++|+.||.|++||+++++++.++.+|...|.+++|+|++ ++|++|+
T Consensus 204 ~~~~~~~~------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 204 PASQIGCS------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp CEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred eeeeeecc------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 88877532 455678999999865 68899999999999999999999999999999999999998 5789999
Q ss_pred cCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccc
Q 003467 314 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 393 (817)
Q Consensus 314 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
.|++|++||+.+++ +..+.+|...|++++|+ |+++
T Consensus 278 ~D~~i~vwd~~~~~------------------~~~~~~H~~~V~~v~~s---------p~~~------------------ 312 (344)
T 4gqb_B 278 EDCSLAVLDSSLSE------------------LFRSQAHRDFVRDATWS---------PLNH------------------ 312 (344)
T ss_dssp TTSCEEEECTTCCE------------------EEEECCCSSCEEEEEEC---------SSST------------------
T ss_pred CCCeEEEEECCCCc------------------EEEEcCCCCCEEEEEEe---------CCCC------------------
Confidence 99999999987765 34568999999999998 7764
Q ss_pred ccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 394 AHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 394 ~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
.+|++++.|++|++|++.+.
T Consensus 313 -----~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 313 -----SLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp -----TEEEEEETTSCEEEEECCC-
T ss_pred -----eEEEEEcCCCeEEEEECCCC
Confidence 47889999999999999763
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-41 Score=356.97 Aligned_cols=296 Identities=18% Similarity=0.238 Sum_probs=256.7
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
-++.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+++ ....+.+| ...|.+++|+|++++ |+++
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~----~~~~~~~h-~~~v~~~~~s~~g~~------las~ 126 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ----KTHAIKLH-CPWVMECAFAPNGQS------VACG 126 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----EEEEEECC-CTTCCCCEECTTSSE------EEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----cceEEecC-CCCEEEEEECCCCCE------EEEe
Confidence 356789999999999999999999999999999999998876 57778877 788999999999988 9999
Q ss_pred eCCCeEEEEECCCCe-------EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 85 SIDGSVSEWDLYDLK-------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
+.|+.|++||+.+.. ....+.+|.+.|.+++|+|++.
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~------------------------------------ 170 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE------------------------------------ 170 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS------------------------------------
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC------------------------------------
Confidence 999999999997532 3456788999999999999763
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEee--ccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECC-
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR--SLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAK- 233 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~- 233 (817)
..|++|+.|+.|++||+.++..+.... ...+|...|.+++|++ ++.+|++|+.|++|++||++
T Consensus 171 -------------~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 171 -------------TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp -------------SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred -------------CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 379999999999999998777653221 1267999999999987 88999999999999999998
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-------cCeeEEEEecC
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-------GDVNALAAAPS 305 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~s~~ 305 (817)
.++.+..+. +|...|.+++|+|++ .|++++.||+|++||+++++.+..+..+. ..|.+++|+|+
T Consensus 238 ~~~~~~~~~--------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 238 TSRAVRTYH--------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS 309 (380)
T ss_dssp TCCCCEEEC--------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred CCcceEEEC--------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence 456666665 799999999999999 79999999999999999999988876543 24899999999
Q ss_pred CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc----ccCCCccceeEeecccCCCCCCCccccccccC
Q 003467 306 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV----RAHTHDVRALTVAVPISREDPLPEDKVKRSRG 381 (817)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (817)
|++|++|+.||.|++||...++ .+..+ .+|...|.+++|+ |+++
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~-----------------~~~~~~~~~~~h~~~v~~l~~s---------~dg~------ 357 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAE-----------------MVLNLGTLQNSHEGRISCLGLS---------SDGS------ 357 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCC-----------------EEEEECCSCSSCCCCCCEEEEC---------SSSS------
T ss_pred CCEEEEEECCCCEEEEECCCCc-----------------eEEEEecccCCCCCceEEEEEC---------CCCC------
Confidence 9999999999999999987765 33333 6899999999998 8886
Q ss_pred CCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 382 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+|++|+.|+.|++|++...
T Consensus 358 ------------------~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 358 ------------------ALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ------------------EEEEECTTSCEEEEECCSS
T ss_pred ------------------EEEEeeCCCCEEEEecCCC
Confidence 9999999999999998764
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=359.02 Aligned_cols=342 Identities=13% Similarity=0.117 Sum_probs=276.1
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCC-CCCCCceEEEeeCCCeEEEEEC----CCCe------EEEE
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGK-MGLPGGRLFSSSIDGSVSEWDL----YDLK------QKIV 103 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~-~~~~~~~l~s~~~d~~i~vwd~----~~~~------~~~~ 103 (817)
..+.+|++.... .......| ...|.+++|+|+++ + |++++.|+.|++||+ .+++ ....
T Consensus 25 ~~~~~~~~~~~~----~~~~~~~~-~~~v~~~~~s~~~~~~------l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 93 (425)
T 1r5m_A 25 SIDSSDDLDGFV----KILKEIVK-LDNIVSSTWNPLDESI------LAYGEKNSVARLARIVETDQEGKKYWKLTIIAE 93 (425)
T ss_dssp ---------CCC----EECEEEEE-CSCCSEEEECSSCTTE------EEEEETBTEEEEEEEEEC------CEEEEEEEE
T ss_pred cccccccchhhh----hheeeeec-cCceEEEEECCCCCcE------EEEecCCceEEEEEEecccCCcccccccccccc
Confidence 446678876544 23333444 57999999999998 7 999999999999999 8888 4555
Q ss_pred Eee----------cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 104 LQS----------IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 104 ~~~----------~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
+.. |...|.+++|+|++ ++|
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------------------------------------~~l 123 (425)
T 1r5m_A 94 LRHPFALSASSGKTTNQVTCLAWSHDG--------------------------------------------------NSI 123 (425)
T ss_dssp EECCCCCC------CBCEEEEEECTTS--------------------------------------------------SEE
T ss_pred ccccccccccccCCCCceEEEEEcCCC--------------------------------------------------CEE
Confidence 554 68899999999998 599
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
++++.||.|++||. ++..+ ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. +.
T Consensus 124 ~~~~~dg~i~i~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~ 191 (425)
T 1r5m_A 124 VTGVENGELRLWNK-TGALL---NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL--------KE 191 (425)
T ss_dssp EEEETTSCEEEEET-TSCEE---EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC--------C-
T ss_pred EEEeCCCeEEEEeC-CCCee---eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec--------cc
Confidence 99999999999994 35444 67789999999999999999999999999999999999998888763 33
Q ss_pred ee---------------EEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcE
Q 003467 254 LC---------------IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 254 ~~---------------v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
.. +.+++|++++.+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 33 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCC
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 398 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (817)
++|++.... .+..+..|...|.+++++ |++
T Consensus 272 ~i~d~~~~~-----------------~~~~~~~~~~~i~~~~~~---------~~~------------------------ 301 (425)
T 1r5m_A 272 RIWHGGNGN-----------------SQNCFYGHSQSIVSASWV---------GDD------------------------ 301 (425)
T ss_dssp EEECSSSBS-----------------CSEEECCCSSCEEEEEEE---------TTT------------------------
T ss_pred EEEECCCCc-----------------cceEecCCCccEEEEEEC---------CCC------------------------
Confidence 999998876 455667788888888887 544
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 478 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~ 478 (817)
.+++++.|+.|++||+.+..
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~----------------------------------------------------------- 321 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNT----------------------------------------------------------- 321 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTE-----------------------------------------------------------
T ss_pred -EEEEEeCCCcEEEEECCCCc-----------------------------------------------------------
Confidence 78888889999998875421
Q ss_pred ccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 479 STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
.+ ..+..+...+.+++|+|++++|+++
T Consensus 322 ------------------------------------------------~~-----~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 322 ------------------------------------------------LL-----ALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp ------------------------------------------------EE-----EEEECTTCCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------Ee-----EecccCCccEEEEEEcCCCCEEEEE
Confidence 00 0011223367888999999999999
Q ss_pred ecCCcEEEEEccCCc--------------------eeeeeccCcccccccCCCCCC--ceeEEEEccCCCEEEEEeCCCc
Q 003467 559 GHDRRIYVVDVSSSE--------------------LLHTFTPCREEHDREIQPSEP--PITKMFTSSDGQWLAAVNCFGD 616 (817)
Q Consensus 559 ~~dg~i~v~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~i~~l~~s~dg~~la~~~~dg~ 616 (817)
+.||.|++||+.+++ .+..+.. |.. .|++++|+|++++||+++.||.
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-----------SQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECC-----------TTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC-----------cccCCceEEEEccCCCceEEEEecCce
Confidence 999999999998777 7777776 655 9999999999999999999999
Q ss_pred EEEEECC
Q 003467 617 VYIFNLE 623 (817)
Q Consensus 617 i~vwd~~ 623 (817)
|++|+++
T Consensus 418 i~iw~~~ 424 (425)
T 1r5m_A 418 GSVVAIP 424 (425)
T ss_dssp CEEEECC
T ss_pred EEEEeec
Confidence 9999986
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.6e-41 Score=349.76 Aligned_cols=316 Identities=15% Similarity=0.192 Sum_probs=236.3
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC------CCcEEEEECCCCceEEEEEeec
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~------dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
+++.+..+.....|++.. .....|+..|.+++|+|||++|++|+. |+.|++|+..++.....+...
T Consensus 18 ~~~~~~g~~~~~~w~~p~-------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~- 89 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPV-------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA- 89 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-
T ss_pred eEEecCCCccccccCCCC-------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-
Confidence 556666677888998752 233479999999999999999999998 778999998776533221100
Q ss_pred CCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEE----EeecCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ----AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
...|...|.+++|+|++.+++++.||+|++||+.+++... ...+|...|.+++|+|++++|++++.|+.|++|
T Consensus 90 ---~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 90 ---GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp ---EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ---cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 0147788999999999999999999999999999876543 345799999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
|+.+++ .+..+..|...|.+++|+ +++. .++
T Consensus 167 d~~~~~-----------------~~~~~~~h~~~v~~v~~s---------~~~~-----------------------~~~ 197 (357)
T 4g56_B 167 DLSQKA-----------------VLKSYNAHSSEVNCVAAC---------PGKD-----------------------TIF 197 (357)
T ss_dssp ETTTTE-----------------EEEEECCCSSCEEEEEEC---------TTCS-----------------------SCE
T ss_pred ECCCCc-----------------EEEEEcCCCCCEEEEEEc---------cCCC-----------------------cee
Confidence 998887 778889999999999997 5553 378
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccc
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 481 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~ 481 (817)
++++.|+.|++||+.+.+....
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~---------------------------------------------------------- 219 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATR---------------------------------------------------------- 219 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCB----------------------------------------------------------
T ss_pred eeeccCCceEEEECCCCceeee----------------------------------------------------------
Confidence 9999999999999865321100
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC-CCEEEEEec
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGH 560 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-~~~l~~~~~ 560 (817)
.....+...+.+++|+|+ +.+|++|+.
T Consensus 220 ----------------------------------------------------~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 220 ----------------------------------------------------IDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp ----------------------------------------------------CCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred ----------------------------------------------------eeeccccccccchhhhhcccceEEEeec
Confidence 111223336889999997 468889999
Q ss_pred CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC-CEEEEEeCCCcEEEEECCCcceEEEEecCCCCCe
Q 003467 561 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 561 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
|+.|++||+.+++.+.++.+ |...|++++|+|++ ++||+++.||+|+|||+++++....+ .|...|
T Consensus 248 d~~i~~wd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V 314 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAV-----------HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFV 314 (357)
T ss_dssp SSCEEEEESSCGGGCEEECC-----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCE
T ss_pred ccceeEEECCCCcEeEEEec-----------cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCE
Confidence 99999999999999999988 89999999999987 58999999999999999999876544 477899
Q ss_pred EEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 640 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
++++|+|.++.+|++++.|++|++|++.+..
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998678899999999999999997653
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.7e-40 Score=335.54 Aligned_cols=290 Identities=21% Similarity=0.339 Sum_probs=260.0
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
...+.+|...|++++|+|++++||+|+.||.|+||+..+++ ....+.+| ...|.+++|+|++++ |++++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~------l~s~~ 84 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGH-KLGISDVAWSSDSNL------LVSAS 84 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCC-SSCEEEEEECTTSSE------EEEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccC-CCceEEEEEcCCCCE------EEEEC
Confidence 34468999999999999999999999999999999998887 56777777 789999999999987 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.|+.|++||+.+++++..+.+|...|.+++|+|++
T Consensus 85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------- 119 (312)
T 4ery_A 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS--------------------------------------------- 119 (312)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---------------------------------------------
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---------------------------------------------
Confidence 99999999999999999999999999999999998
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
+++++|+.||.|++||+.++..+ ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 120 -----~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-- 189 (312)
T 4ery_A 120 -----NLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-- 189 (312)
T ss_dssp -----SEEEEEETTSCEEEEETTTCCEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--
T ss_pred -----CEEEEEeCCCcEEEEECCCCEEE---EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec--
Confidence 59999999999999999877655 77888999999999999999999999999999999999988877653
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEE--EE-ecCCCEEEEEccCCcEEEE
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL--AA-APSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~-s~~~~~l~~~~~dg~i~iw 321 (817)
.+...+..++|+|++ .|++++.||.|++||+.+++.+..+.+|...+.++ .+ .+++.+|++|+.||.|++|
T Consensus 190 -----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vw 264 (312)
T 4ery_A 190 -----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264 (312)
T ss_dssp -----SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEE
T ss_pred -----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEE
Confidence 466789999999999 79999999999999999999999999887654432 33 4678899999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
|+.+++ .+..+.+|...|.+++++ |++. ++
T Consensus 265 d~~~~~-----------------~~~~~~~h~~~v~~~~~~---------p~~~------------------------~l 294 (312)
T 4ery_A 265 NLQTKE-----------------IVQKLQGHTDVVISTACH---------PTEN------------------------II 294 (312)
T ss_dssp ETTTCC-----------------EEEEECCCSSCEEEEEEC---------SSSS------------------------EE
T ss_pred ECCCch-----------------hhhhhhccCCcEEEEeec---------CcCC------------------------ce
Confidence 998877 778889999999999998 7775 88
Q ss_pred EEec--CCCeEEEEeCC
Q 003467 402 ISAG--DDTKLFAYCAN 416 (817)
Q Consensus 402 ~s~~--~dg~i~~~~~~ 416 (817)
++++ .|+.|++|+.+
T Consensus 295 ~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECTTTCCEEEEECC
T ss_pred EEEEccCCccEEEecCC
Confidence 8886 69999999864
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-40 Score=337.45 Aligned_cols=297 Identities=19% Similarity=0.229 Sum_probs=241.8
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEE-cCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTV-HGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
...+.+.+|.++|.+++|+|+ +||+|+.|++|+|||+..+.. .+...+ .+.|...|.+++|+|++++ |+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~------la 74 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSL------LA 74 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSE------EE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCE------EE
Confidence 345668899999999999998 999999999999999987542 244555 4435899999999999987 99
Q ss_pred EeeCCCeEEEEECC-------CCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 83 SSSIDGSVSEWDLY-------DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 83 s~~~d~~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
+++.|++|++||+. +.+++..+.+|...|.+++|+|++
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----------------------------------- 119 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----------------------------------- 119 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-----------------------------------
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-----------------------------------
Confidence 99999999999985 345678889999999999999998
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEec-CCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 234 (817)
++|++|+.|+.|++||+. .+........+.+|...|.+++|+|++.+|++|+.|++|++||..+
T Consensus 120 ---------------~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 120 ---------------YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp ---------------CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred ---------------CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 599999999999999995 3333444577889999999999999999999999999999999877
Q ss_pred C--ceEEEEEeecCCCCCCCceeEEEeEEecC--C-eEEEEcCCCcEEEEeCCCC--------eEEEEeec-CccCeeEE
Q 003467 235 G--YEIYRITVGLGGLGSGPELCIWSLLSLRC--G-TLVSADSTGSVQFWDSRHG--------TLLQAHSF-HKGDVNAL 300 (817)
Q Consensus 235 g--~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~-~l~s~~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~l 300 (817)
+ +++..+. +|...|++++|+|+ + .|++++.|++|++||+..+ .+...+.. |...|.++
T Consensus 185 ~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 185 DDWECVAVLN--------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp TEEEEEEEEC--------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred CCeeEEEEcc--------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 6 4555554 79999999999998 5 6999999999999998754 44555655 89999999
Q ss_pred EEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEee-ccccCCC-ccceeEeecccCCCCCCC--cccc
Q 003467 301 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTH-DVRALTVAVPISREDPLP--EDKV 376 (817)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~-~v~~l~~~~~~~~~~~~~--~~~~ 376 (817)
+|++++ +|++++.||.|++|+..++. |.... ....|.. .|.+++|+ | +++
T Consensus 257 ~~s~~~-~l~s~~~dg~v~iw~~~~~~---------------~~~~~~~~~~h~~~~v~~v~~~---------~~~~~~- 310 (330)
T 2hes_X 257 AWGFNG-LIASVGADGVLAVYEEVDGE---------------WKVFAKRALCHGVYEINVVKWL---------ELNGKT- 310 (330)
T ss_dssp EECTTS-CEEEEETTSCEEEEEEETTE---------------EEEEEEESCTTTTSCEEEEEEC--------------C-
T ss_pred EEcCCC-EEEEEeCCCEEEEEEcCCCc---------------eEEEeccccccccceEEEEEEe---------cCCCce-
Confidence 999765 79999999999999987653 22332 3467776 89999997 5 343
Q ss_pred ccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 377 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+|++|+.||.|++|++..
T Consensus 311 -----------------------~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 311 -----------------------ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----------------------CEEEEETTSEEEEEEC--
T ss_pred -----------------------EEEEecCCCcEEEEEecc
Confidence 899999999999999864
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.6e-40 Score=332.91 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=249.6
Q ss_pred eeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC
Q 003467 196 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG 274 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg 274 (817)
.+++.+|.+.|.+++|+|++++|++++.||+|++||+.++..+..+. .|...|.+++|+|++ .|++|+.|+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------VTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------CCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------ccCCcEEEEEEeCCCCEEEEECCCC
Confidence 37788999999999999999999999999999999999999998887 688999999999999 799999999
Q ss_pred cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 275 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++.. ....+.+|..
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------~~~~~~~h~~ 141 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------------LEQTFEGHEH 141 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE----------------EEEEECCCCS
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc----------------hhhhhcccCC
Confidence 999999999999999999999999999999999999999999999999987641 4567789999
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCc
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 434 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 434 (817)
.|.+++|+ |.+. ..|++|+.|+.|++||+......
T Consensus 142 ~v~~v~~~---------p~~~-----------------------~~l~sgs~D~~v~iwd~~~~~~~------------- 176 (304)
T 2ynn_A 142 FVMCVAFN---------PKDP-----------------------STFASGCLDRTVKVWSLGQSTPN------------- 176 (304)
T ss_dssp CEEEEEEC---------TTCT-----------------------TEEEEEETTSEEEEEETTCSSCS-------------
T ss_pred cEEEEEEC---------CCCC-----------------------CEEEEEeCCCeEEEEECCCCCcc-------------
Confidence 99999997 6321 38999999999999998642200
Q ss_pred eeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCce
Q 003467 435 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 514 (817)
Q Consensus 435 ~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i 514 (817)
..+
T Consensus 177 -------------------------------------------------~~~---------------------------- 179 (304)
T 2ynn_A 177 -------------------------------------------------FTL---------------------------- 179 (304)
T ss_dssp -------------------------------------------------EEE----------------------------
T ss_pred -------------------------------------------------cee----------------------------
Confidence 000
Q ss_pred EEEEeecCCCCCceEEEeeecCCccccceeEEEEec--CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 003467 515 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 592 (817)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 592 (817)
...+...+..+.|+| ++.+|++++.|++|++||+.+++++.++.+ |
T Consensus 180 ---------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-----------h 227 (304)
T 2ynn_A 180 ---------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-----------H 227 (304)
T ss_dssp ---------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-----------C
T ss_pred ---------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-----------C
Confidence 001112456666765 788999999999999999999999999998 8
Q ss_pred CCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCC--eEEEEecCCeEEEEEcCCC
Q 003467 593 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN--VLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~l~~~~~d~~i~vwd~~~~ 669 (817)
...|++++|+|++++||+++.||+|++||+.+++....+.. +...+.+++|+| ++. +|++++ |+.+.+|++.+.
T Consensus 228 ~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHP-TGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-SSSSEEEEEECT-TCGGGCEEEEE-TTEEEEEECC--
T ss_pred CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-CCccEEEEEECC-CCCceEEEEec-CCceEEEEeccC
Confidence 99999999999999999999999999999999998877754 456899999999 553 466655 555888888654
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-39 Score=339.02 Aligned_cols=293 Identities=22% Similarity=0.298 Sum_probs=257.4
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccC
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
...++.|| ...|.+++|+|++++ |+|++.|++|++||..+++....+..|...|.+++|+|++
T Consensus 56 ~~~~l~gH-~~~V~~~~~s~d~~~------l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g---------- 118 (354)
T 2pbi_B 56 TRRTLKGH-GNKVLCMDWCKDKRR------IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG---------- 118 (354)
T ss_dssp EEEEEECC-SSCEEEEEECTTSSE------EEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS----------
T ss_pred EEEEecCC-CCeEEEEEECCCCCE------EEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC----------
Confidence 56788888 799999999999987 9999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc---eeEeeccCCccceEE
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE---LIYHRSLPRVSGRVL 207 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~ 207 (817)
..+++|+.|+.+++|++..... ......+.+|.+.|.
T Consensus 119 ----------------------------------------~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 158 (354)
T 2pbi_B 119 ----------------------------------------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS 158 (354)
T ss_dssp ----------------------------------------SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEE
T ss_pred ----------------------------------------CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEE
Confidence 5999999999999999864311 112255678999999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC--C-eEEEEcCCCcEEEEeCCCC
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC--G-TLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~-~l~s~~~dg~i~iwd~~~~ 284 (817)
+++|+|++..|++++.|++|++||+.+++.+..+. +|...|.++.++|+ + .|++|+.||.|++||++++
T Consensus 159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999999999999999999888 78899999999874 4 7999999999999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
+++..+..|...|.+++|+|++++|++++.|++|++||+.... . +.
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-----------------~-------------~~---- 276 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-----------------E-------------VA---- 276 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------E-------------EE----
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------E-------------EE----
Confidence 9999999999999999999999999999999999999976532 0 00
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
++.
T Consensus 277 -----------------------------------------------~~~------------------------------ 279 (354)
T 2pbi_B 277 -----------------------------------------------IYS------------------------------ 279 (354)
T ss_dssp -----------------------------------------------EEC------------------------------
T ss_pred -----------------------------------------------EEc------------------------------
Confidence 000
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCC
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV 524 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~ 524 (817)
T Consensus 280 -------------------------------------------------------------------------------- 279 (354)
T 2pbi_B 280 -------------------------------------------------------------------------------- 279 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccC
Q 003467 525 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD 604 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 604 (817)
...+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|++++||||
T Consensus 280 -----------~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-----------h~~~v~~l~~spd 337 (354)
T 2pbi_B 280 -----------KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-----------HENRVSTLRVSPD 337 (354)
T ss_dssp -----------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-----------CSSCEEEEEECTT
T ss_pred -----------CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-----------CCCcEEEEEECCC
Confidence 000011467889999999999999999999999999999988888 8999999999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 003467 605 GQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 605 g~~la~~~~dg~i~vwd 621 (817)
|++||+++.||+|+||+
T Consensus 338 g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 338 GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEcCCCCEEecC
Confidence 99999999999999996
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=334.48 Aligned_cols=270 Identities=19% Similarity=0.239 Sum_probs=214.0
Q ss_pred EEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEE---EEeecCceEEEEeeecCCCcccee
Q 003467 50 HCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKI---VLQSIDFSIWQMAVAPSNSSLMHA 126 (817)
Q Consensus 50 ~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~~~~~ 126 (817)
.+..++.+|....|.+++|+|+|++ ||+++.|++|++||+.++.... ...+|...|.+++|+|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~------las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g------ 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTL------LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG------ 73 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSC------EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS------
T ss_pred EEeeeecCCCCCcEEEEEECCCCCE------EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC------
Confidence 4677888986669999999999998 9999999999999999886442 235799999999999998
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceE
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV 206 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 206 (817)
++|++|+.|+.|+||++..+ .......+.+|.+.|
T Consensus 74 --------------------------------------------~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~h~~~v 108 (345)
T 3fm0_A 74 --------------------------------------------NYLASASFDATTCIWKKNQD-DFECVTTLEGHENEV 108 (345)
T ss_dssp --------------------------------------------SEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCE
T ss_pred --------------------------------------------CEEEEEECCCcEEEEEccCC-CeEEEEEccCCCCCc
Confidence 59999999999999999744 333447889999999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCe
Q 003467 207 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 207 ~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~ 285 (817)
.+++|+|++++|++|+.|++|++||+.++.....+... ..|...|.+++|+|++ .|++++.|+.|++||.++++
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-----NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE-----CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE
T ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe-----cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC
Confidence 99999999999999999999999999877543322211 1688899999999999 79999999999999998775
Q ss_pred --EEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc-CCCccceeEee
Q 003467 286 --LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVA 362 (817)
Q Consensus 286 --~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~ 362 (817)
+...+.+|...|.+++|+|++++|++++.|++|++|+........ ..........|.++..+.+ |...|.+++++
T Consensus 184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ--GVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT--CCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc--cceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 457889999999999999999999999999999999975433110 0111112234555555544 66677777776
Q ss_pred cccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 363 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
|++. .|++++.|+.+++|+..
T Consensus 262 ---------~~~~------------------------~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 262 ---------QLTG------------------------ALATACGDDAIRVFQED 282 (345)
T ss_dssp ---------TTTC------------------------CEEEEETTSCEEEEEEC
T ss_pred ---------cCCC------------------------EEEEEeCCCeEEEEEeC
Confidence 5553 67777777777777654
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-39 Score=333.62 Aligned_cols=290 Identities=15% Similarity=0.203 Sum_probs=252.1
Q ss_pred eeeccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
.-+.+|.++|++++|+|++ ++||+|+.|++|++||+...... ......+.+| ...|.+++|+|++++ |+++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~------l~s~ 83 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGAY------ALSA 83 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSSE------EEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCCE------EEEE
Confidence 3468999999999999965 89999999999999998754321 1245677787 789999999999988 9999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+.|++|++||+.+++++..+.+|...|.+++|+|++
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------------------------- 119 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-------------------------------------------- 119 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS--------------------------------------------
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC--------------------------------------------
Confidence 999999999999999999999999999999999998
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC------CCEEEEeeCCCcEEEEECCCCceE
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD------GNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d------g~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
.++++|+.|+.|++||+. +..+ ..+.+|...|.+++|+|. +..|++++.|+.|++||+.+++..
T Consensus 120 ------~~l~s~s~D~~i~vwd~~-~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 120 ------SMIISGSRDKTIKVWTIK-GQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp ------CEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred ------CEEEEEeCCCeEEEEECC-CCeE---EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh
Confidence 499999999999999996 3343 677899999999999985 458999999999999999998888
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCc
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
..+. +|...|.+++|+|++ .|++++.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .
T Consensus 190 ~~~~--------~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~ 259 (319)
T 3frx_A 190 ADFI--------GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-G 259 (319)
T ss_dssp EEEC--------CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-E
T ss_pred eeec--------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-C
Confidence 7776 799999999999999 799999999999999999999998876 4689999999999988887654 6
Q ss_pred EEEEEeecccCCCCCCCCCccccceEEEeecc--------ccCCCccceeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 318 VILYKASCESIGPNDGLSSSEVIKKWIYVGSV--------RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
+++|++.... .+..+ ..|...+.+++|+ |+++
T Consensus 260 i~v~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~s---------pdg~-------------- 299 (319)
T 3frx_A 260 IKVFSLDPQY-----------------LVDDLRPEFAGYSKAAEPHAVSLAWS---------ADGQ-------------- 299 (319)
T ss_dssp EEEEEETTEE-----------------EEEEECCCCTTCCGGGCCCEEEEEEC---------TTSS--------------
T ss_pred cEEEEeCcCe-----------------eeeccCccccccccCcCcceeEEEEC---------CCCC--------------
Confidence 9999987654 22222 3456678899998 8887
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+|++|+.|+.|++|++.+
T Consensus 300 ----------~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 300 ----------TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ----------EEEEEETTSCEEEEEEEE
T ss_pred ----------EEEEeecCceEEEEEEee
Confidence 999999999999999865
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=350.55 Aligned_cols=347 Identities=18% Similarity=0.221 Sum_probs=281.0
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
...+.+|+++..........|.+.|.+++|+|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------------------------------------------- 57 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLD---------------------------------------------- 57 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSC----------------------------------------------
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCC----------------------------------------------
Confidence 3456788988776666666778999999999999
Q ss_pred cccCC-EEEEEeCCCcEEEEEe----cCCCc------e-eEeeccCC------ccceEEEEEEccCCCEEEEeeCCCcEE
Q 003467 167 VVEDR-RVALACDDGCVRIYRI----TDSDE------L-IYHRSLPR------VSGRVLSVTWSADGNMLYSGSSDGYIR 228 (817)
Q Consensus 167 ~~~~~-~l~~~~~dg~i~iwd~----~~~~~------~-~~~~~~~~------h~~~v~~v~~s~dg~~l~s~~~dg~i~ 228 (817)
+ +||+|+.||.|++|++ .++.. . .....+.+ |.+.|.+++|+|++++|++++.||.|+
T Consensus 58 ----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 58 ----ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133 (425)
T ss_dssp ----TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 4 8999999999999999 76652 2 11222332 688999999999999999999999999
Q ss_pred EEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccC-----------
Q 003467 229 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD----------- 296 (817)
Q Consensus 229 vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~----------- 296 (817)
+|| .+++.+..+. .|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..+...
T Consensus 134 i~~-~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 134 LWN-KTGALLNVLN--------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp EEE-TTSCEEEEEC--------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred EEe-CCCCeeeecc--------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 999 6788887776 688999999999999 7999999999999999999999999888777
Q ss_pred ----eeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCC
Q 003467 297 ----VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 372 (817)
Q Consensus 297 ----v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 372 (817)
+.+++|++++ .+++++.||.|++|++.++. .+..+..|...|.+++++ |
T Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----------------~~~~~~~~~~~i~~~~~~---------~ 257 (425)
T 1r5m_A 205 DGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----------------PTGKLIGHHGPISVLEFN---------D 257 (425)
T ss_dssp -CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----------------CSEEECCCSSCEEEEEEE---------T
T ss_pred CcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----------------eeeeeccCCCceEEEEEC---------C
Confidence 9999999985 58899999999999998876 455677888899999997 7
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
+++ +|++++.|+.|++||+.....
T Consensus 258 ~~~------------------------~l~~~~~d~~i~i~d~~~~~~-------------------------------- 281 (425)
T 1r5m_A 258 TNK------------------------LLLSASDDGTLRIWHGGNGNS-------------------------------- 281 (425)
T ss_dssp TTT------------------------EEEEEETTSCEEEECSSSBSC--------------------------------
T ss_pred CCC------------------------EEEEEcCCCEEEEEECCCCcc--------------------------------
Confidence 765 899999999999998764210
Q ss_pred eCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEe
Q 003467 453 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 532 (817)
Q Consensus 453 ~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~ 532 (817)
.
T Consensus 282 ---------------------------------------------------------------------------~---- 282 (425)
T 1r5m_A 282 ---------------------------------------------------------------------------Q---- 282 (425)
T ss_dssp ---------------------------------------------------------------------------S----
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred eecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe
Q 003467 533 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 612 (817)
Q Consensus 533 ~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 612 (817)
..+..+...+.+++|+|++ +|++++.|+.|++||+.+++.+..+.. |...|++++|+|++++|++++
T Consensus 283 -~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 283 -NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------DGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp -EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------TTCCEEEEEECTTSSEEEEEE
T ss_pred -eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------CCccEEEEEEcCCCCEEEEEE
Confidence 1112344478999999999 999999999999999999999999887 889999999999999999999
Q ss_pred CCCcEEEEECCCcc--------------------eEEEEecCCCC-CeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 613 CFGDVYIFNLEIQR--------------------QHWFISRLEGA-SVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 613 ~dg~i~vwd~~~~~--------------------~~~~~~~~~~~-~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
.||.|++||+.+++ ....+...... .|++++|+| ++++|++++.|+.|++|+++.
T Consensus 350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECCC
T ss_pred CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeecC
Confidence 99999999999887 66666543323 999999999 999999999999999999863
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.3e-40 Score=337.56 Aligned_cols=300 Identities=16% Similarity=0.233 Sum_probs=234.8
Q ss_pred EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC------------CceEEEEEeecCCCC
Q 003467 182 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL------------GYEIYRITVGLGGLG 249 (817)
Q Consensus 182 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~------------g~~~~~~~~~~~~~~ 249 (817)
.+.|++... ....|...|.+++|+|||++|++++ |+++++||... +.....+
T Consensus 16 ~r~w~~~~~-------~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~-------- 79 (344)
T 4gqb_B 16 AREWNLPPN-------APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV-------- 79 (344)
T ss_dssp -------CC-------SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE--------
T ss_pred ccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee--------
Confidence 467877532 2235677899999999999999887 67888887321 1111111
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEE----eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA----HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.++..|.+++|+|++.|++++.||+|++||+.+++.+.. +.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 80 -~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 -QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp -EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 255679999999999999999999999999998876543 458999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 326 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
++ .+..+.+|...|.+++|+ +++. .+|++++
T Consensus 159 ~~-----------------~~~~~~~h~~~V~~~~~~---------~~~~-----------------------~~l~s~s 189 (344)
T 4gqb_B 159 QV-----------------VLSSYRAHAAQVTCVAAS---------PHKD-----------------------SVFLSCS 189 (344)
T ss_dssp TE-----------------EEEEECCCSSCEEEEEEC---------SSCT-----------------------TEEEEEE
T ss_pred Cc-----------------EEEEEcCcCCceEEEEec---------CCCC-----------------------Cceeeec
Confidence 87 788899999999999997 6653 4899999
Q ss_pred CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeee
Q 003467 406 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ 485 (817)
Q Consensus 406 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~ 485 (817)
.|+.|++||+.+.+... .
T Consensus 190 ~D~~v~iwd~~~~~~~~--------------------------------------------------------------~ 207 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPAS--------------------------------------------------------------Q 207 (344)
T ss_dssp TTSCEEEEETTSSSCEE--------------------------------------------------------------E
T ss_pred cccccccccccccceee--------------------------------------------------------------e
Confidence 99999999987532000 0
Q ss_pred eeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC-CCEEEEEecCCcE
Q 003467 486 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRI 564 (817)
Q Consensus 486 ~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-~~~l~~~~~dg~i 564 (817)
.....+...+.+++|+|+ +++|++|+.||+|
T Consensus 208 ------------------------------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 208 ------------------------------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp ------------------------------------------------CC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ------------------------------------------------eecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 001112225778899984 5688999999999
Q ss_pred EEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC-CEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEE
Q 003467 565 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG 643 (817)
Q Consensus 565 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~ 643 (817)
++||+.+++.+.++.+ |...|++++||||| ++||+++.|++|+|||+.+++... + ..|...|++++
T Consensus 240 ~~wd~~~~~~~~~~~~-----------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~ 306 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAV-----------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDAT 306 (344)
T ss_dssp EEEESCC--CCEEEEC-----------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEE
T ss_pred EEEECCCCcEEEEEcC-----------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEE
Confidence 9999999999999998 89999999999998 589999999999999999987643 3 45778999999
Q ss_pred ecCCCCC-eEEEEecCCeEEEEEcCCCcc
Q 003467 644 FPPQNNN-VLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 644 ~sp~d~~-~l~~~~~d~~i~vwd~~~~~~ 671 (817)
|+| ++. +|++++.|++|++|++.++.+
T Consensus 307 ~sp-~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 307 WSP-LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ECS-SSTTEEEEEETTSCEEEEECCC---
T ss_pred EeC-CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999 664 677899999999999988765
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=343.89 Aligned_cols=297 Identities=23% Similarity=0.340 Sum_probs=249.8
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC-----------------CCcEEEEEEeecCC
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP-----------------KSRISSLVWCHAGK 73 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~-----------------~~~V~~l~~s~~~~ 73 (817)
.|.+.|+|++|||||++||+|+ ++.++||++.+++ ....+.++. ...|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC----EEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC----EEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence 5999999999999999999987 6899999999887 455555442 22499999999998
Q ss_pred CCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccccc
Q 003467 74 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES 153 (817)
Q Consensus 74 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (817)
+ |++++.|++|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 137 ~------l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--------------------------------- 177 (393)
T 1erj_A 137 F------LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--------------------------------- 177 (393)
T ss_dssp E------EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------------------
T ss_pred E------EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---------------------------------
Confidence 8 9999999999999999999999999999999999999998
Q ss_pred CCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEEC
Q 003467 154 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~ 232 (817)
++|++++.|+.|++||+.++... ..+ .+...+.+++|+| ++++|++|+.||.|++||+
T Consensus 178 -----------------~~l~s~s~d~~v~iwd~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 178 -----------------DKLVSGSGDRTVRIWDLRTGQCS---LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp -----------------SEEEEEETTSEEEEEETTTTEEE---EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred -----------------CEEEEecCCCcEEEEECCCCeeE---EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 48999999999999999866543 233 3566899999999 8999999999999999999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC------------CeEEEEeecCccCeeE
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH------------GTLLQAHSFHKGDVNA 299 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~ 299 (817)
.+++.+..+.... ....+|...|++++|+|++ .|++++.||.|++||+++ +.+...+.+|...|.+
T Consensus 237 ~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 237 ETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 9998887763211 1112688999999999999 799999999999999975 3456678899999999
Q ss_pred EEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccc
Q 003467 300 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS 379 (817)
Q Consensus 300 l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 379 (817)
++|+|++.+|++++.|+.|++||..++. .+..+.+|...|.++++++... ..|++
T Consensus 316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~-----------------~~~~l~~h~~~v~~v~~~~~~~---~~p~~----- 370 (393)
T 1erj_A 316 VATTQNDEYILSGSKDRGVLFWDKKSGN-----------------PLLMLQGHRNSVISVAVANGSS---LGPEY----- 370 (393)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTCC-----------------EEEEEECCSSCEEEEEECSSCT---TCTTC-----
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCe-----------------EEEEECCCCCCEEEEEecCCcC---cCCCC-----
Confidence 9999999999999999999999998877 6778899999999999962110 11333
Q ss_pred cCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 380 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
++|++|+.|+.|++|++..
T Consensus 371 -------------------~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 371 -------------------NVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -------------------EEEEEEETTSEEEEEEEEE
T ss_pred -------------------CEEEEECCCCcEEECcccc
Confidence 4999999999999999865
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-40 Score=351.13 Aligned_cols=325 Identities=17% Similarity=0.200 Sum_probs=264.8
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
+..+..|+..+..+.+++.+|.+.|++++|+|++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~---------------------------------------------- 78 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEK---------------------------------------------- 78 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTS----------------------------------------------
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCC----------------------------------------------
Confidence 4456678888889999999999999999999998
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
++|++|+.||.|+|||+.++... ..+..|...|.+++|+|+|++|++|+.|+.|++||+.+...... .....
T Consensus 79 ----~~l~s~s~D~~v~iWd~~~~~~~---~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~ 150 (380)
T 3iz6_a 79 ----NWIVSASQDGRLIVWNALTSQKT---HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-NMPVS 150 (380)
T ss_dssp ----SCEEEEETTSEEEEEETTTTEEE---EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-SSTTC
T ss_pred ----CEEEEEeCCCeEEEEECCCCccc---eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-Cccce
Confidence 58999999999999999876655 77888999999999999999999999999999999875421100 00000
Q ss_pred CCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCeEEEEe-----ecCccCeeEEEEec-CCCEEEEEccCCcE
Q 003467 247 GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAH-----SFHKGDVNALAAAP-SHNRVFSTGSDGQV 318 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~s~-~~~~l~~~~~dg~i 318 (817)
....+|...|.++.|+|++ .|++++.|++|++||+.+++.+..+ .+|...|.+++|++ +++++++|+.|+.|
T Consensus 151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v 230 (380)
T 3iz6_a 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230 (380)
T ss_dssp CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence 1123788999999999975 6999999999999999999998877 67999999999987 88999999999999
Q ss_pred EEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCC
Q 003467 319 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 398 (817)
Q Consensus 319 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (817)
++||+..... .+..+.+|...|.+++|+ |+++
T Consensus 231 ~~wd~~~~~~----------------~~~~~~~h~~~v~~v~~~---------p~~~----------------------- 262 (380)
T 3iz6_a 231 RLWDLRITSR----------------AVRTYHGHEGDINSVKFF---------PDGQ----------------------- 262 (380)
T ss_dssp EEEETTTTCC----------------CCEEECCCSSCCCEEEEC---------TTSS-----------------------
T ss_pred EEEECCCCCc----------------ceEEECCcCCCeEEEEEe---------cCCC-----------------------
Confidence 9999974321 456778999999999998 8876
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA 478 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~ 478 (817)
+|++|+.|+.|++||+.+.... ..+.
T Consensus 263 -~l~s~s~D~~i~lwd~~~~~~~------------------------------------~~~~----------------- 288 (380)
T 3iz6_a 263 -RFGTGSDDGTCRLFDMRTGHQL------------------------------------QVYN----------------- 288 (380)
T ss_dssp -EEEEECSSSCEEEEETTTTEEE------------------------------------EEEC-----------------
T ss_pred -eEEEEcCCCeEEEEECCCCcEE------------------------------------EEec-----------------
Confidence 9999999999999998753210 0000
Q ss_pred ccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 479 STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
... .....+...+++++|+|+|++|++|
T Consensus 289 ----------------------------------------~~~------------~~~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 289 ----------------------------------------REP------------DRNDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp ----------------------------------------CCC------------SSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred ----------------------------------------ccc------------cccccccCceEEEEECCCCCEEEEE
Confidence 000 0011222358899999999999999
Q ss_pred ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcc
Q 003467 559 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 559 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~ 626 (817)
+.||.|++||+.+++.+..+... ...|...|++++|||||++||+|+.||+|+||++...+
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTL-------QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCS-------CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCEEEEECCCCceEEEEecc-------cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999988887776321 01289999999999999999999999999999998754
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.4e-39 Score=328.64 Aligned_cols=300 Identities=21% Similarity=0.282 Sum_probs=250.0
Q ss_pred CceeEeeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCC-----ceEEEEEeecCCCCCCCceeEEEeEEecC
Q 003467 191 DELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLG-----YEIYRITVGLGGLGSGPELCIWSLLSLRC 264 (817)
Q Consensus 191 ~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g-----~~~~~~~~~~~~~~~~~~~~v~~v~~~~~ 264 (817)
+.+.+..++.+|.+.|.+++|+|++ ++|++|+.|++|++|++... ..+..+. +|...|.+++|+|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~d 76 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--------GHSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--------CCSSCEEEEEECTT
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--------CCcccEEEEEECCC
Confidence 3455567899999999999999965 89999999999999998643 3344555 79999999999999
Q ss_pred C-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 265 G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 265 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
+ .|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|++...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~----------------- 139 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ----------------- 139 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-----------------
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------
Confidence 9 7999999999999999999999999999999999999999999999999999999998643
Q ss_pred EEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCC
Q 003467 344 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 423 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~ 423 (817)
.+..+.+|...|.++.+. |..+ ...+...+++++.|+.|++||+.+..
T Consensus 140 -~~~~~~~h~~~v~~~~~~---------~~~~------------------~~~~~~~l~s~~~d~~i~~wd~~~~~---- 187 (319)
T 3frx_A 140 -CLATLLGHNDWVSQVRVV---------PNEK------------------ADDDSVTIISAGNDKMVKAWNLNQFQ---- 187 (319)
T ss_dssp -EEEEECCCSSCEEEEEEC---------CC------------------------CCEEEEEETTSCEEEEETTTTE----
T ss_pred -eEEEEeccCCcEEEEEEc---------cCCC------------------CCCCccEEEEEeCCCEEEEEECCcch----
Confidence 466788999999999986 4321 00122378899999999998875421
Q ss_pred cccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCC
Q 003467 424 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 503 (817)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g 503 (817)
T Consensus 188 -------------------------------------------------------------------------------- 187 (319)
T 3frx_A 188 -------------------------------------------------------------------------------- 187 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcc
Q 003467 504 MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 583 (817)
Q Consensus 504 ~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 583 (817)
.. ..+.+|...|.+++|+||+++|++++.||+|++||+.+++.+.++..
T Consensus 188 -----------------------~~-----~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 236 (319)
T 3frx_A 188 -----------------------IE-----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 236 (319)
T ss_dssp -----------------------EE-----EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---
T ss_pred -----------------------hh-----eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---
Confidence 00 11234556799999999999999999999999999999999988884
Q ss_pred cccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecC-------CCCCeEEEEecCCCCCeEEEEe
Q 003467 584 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-------EGASVTAAGFPPQNNNVLIITT 656 (817)
Q Consensus 584 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~i~~l~~sp~d~~~l~~~~ 656 (817)
...|.+++|+|++.+|++++.++ +++|+++.......+... +...+.+++|+| |+++|++++
T Consensus 237 ---------~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~ 305 (319)
T 3frx_A 237 ---------QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGY 305 (319)
T ss_dssp ---------CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEE
T ss_pred ---------CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEee
Confidence 56899999999999999988665 999999987765554321 235789999999 999999999
Q ss_pred cCCeEEEEEcCCC
Q 003467 657 SSNQVYVFDVEAK 669 (817)
Q Consensus 657 ~d~~i~vwd~~~~ 669 (817)
.|+.|++||+.++
T Consensus 306 ~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 306 TDNVIRVWQVMTA 318 (319)
T ss_dssp TTSCEEEEEEEEC
T ss_pred cCceEEEEEEeec
Confidence 9999999999764
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.7e-39 Score=331.88 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=246.8
Q ss_pred eeeeccCCCceEEEEE-----CC-CCCeEEEEecCCcEEEEecCCCCC---CcEEEEEEcCCCCCcEEEEEEeecCCCCC
Q 003467 6 NSSIDWKPSPVVALAT-----SA-DDSQVAAAREDGSLEIWLVSPGTS---GWHCQLTVHGDPKSRISSLVWCHAGKMGL 76 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~-----sp-dg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~g~~~~~V~~l~~s~~~~~~~ 76 (817)
...+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+.+. .......+.+| ...|.+++|+|++.+
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~~~~~~~-- 90 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH-NHFVSDLALSQENCF-- 90 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC-SSCEEEEEECSSTTE--
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC-CCceEEEEECCCCCE--
Confidence 4467899999999999 77 999999999999999999976432 12245677777 789999999999988
Q ss_pred CCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 77 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 77 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
|++++.|++|++||+.+++++..+.+|...|.+++|+|++
T Consensus 91 ----l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~------------------------------------ 130 (343)
T 2xzm_R 91 ----AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN------------------------------------ 130 (343)
T ss_dssp ----EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST------------------------------------
T ss_pred ----EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC------------------------------------
Confidence 9999999999999999999999999999999999999998
Q ss_pred CCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC----------CEEEEeeCCCc
Q 003467 157 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG----------NMLYSGSSDGY 226 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg----------~~l~s~~~dg~ 226 (817)
++|++++.|+.|++||+. +..........+|...|.+++|+|++ .+|++++.||.
T Consensus 131 --------------~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 131 --------------RQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp --------------TEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred --------------CEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 589999999999999997 33332223345899999999999987 79999999999
Q ss_pred EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEec
Q 003467 227 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~ 304 (817)
|++|| .+++....+. +|...|.+++|+|++ .|++++.||.|++||+.. ......+ .+...|.+++|+|
T Consensus 196 i~iwd-~~~~~~~~~~--------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp 265 (343)
T 2xzm_R 196 LKVWN-TNFQIRYTFK--------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNP 265 (343)
T ss_dssp EEEEE-TTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS
T ss_pred EEEEc-CCCceeEEEc--------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECC
Confidence 99999 4566666666 688999999999999 799999999999999943 4444444 3456799999999
Q ss_pred CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCC
Q 003467 305 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREK 384 (817)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (817)
++.+++ ++.|+.|++|++.+........+ ...... ......+|...|.+++|+ |+++
T Consensus 266 ~~~~la-~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~v~~~~~s---------p~g~--------- 322 (343)
T 2xzm_R 266 KLQWVA-VGTDQGVKIFNLMTQSKAPVCTI-EAEPIT---KAEGQKGKNPQCTSLAWN---------ALGK--------- 322 (343)
T ss_dssp SSCEEE-EEESSCEEEEESSSCCSCSEEEC-CCCSGG---GBTTBCCSCCCEEEEEEC---------SSSC---------
T ss_pred CCCEEE-EECCCCEEEEEeCCCCCCceEEe-ecCcch---hhhhhcCCCCceEEEEEC---------CCCC---------
Confidence 998766 45688899999977552110000 000000 011223688889999998 8876
Q ss_pred CccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 385 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+|++|+.||.|++|++.+
T Consensus 323 ---------------~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 323 ---------------KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ---------------CEEEEETTSEEEEEEEEE
T ss_pred ---------------eEEEecCCceEEEEEEEc
Confidence 999999999999999865
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-41 Score=360.83 Aligned_cols=298 Identities=18% Similarity=0.266 Sum_probs=253.3
Q ss_pred CCceEEEEECCCCC-eEEEE----------ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE
Q 003467 13 PSPVVALATSADDS-QVAAA----------REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 13 ~~~I~~la~spdg~-~la~~----------~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l 81 (817)
...|.+++|||+++ +||+| +.||.|+|||+.++... .....+ .| ...|.+++|+|++++ |
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~~~~~~-~~-~~~v~~~~~s~~~~~------l 82 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPIASL-QV-DSKFNDLDWSHNNKI------I 82 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-SCSCCC-CC-SSCEEEEEECSSSSC------E
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-cEEEEE-ec-CCceEEEEECCCCCe------E
Confidence 35789999999997 99999 88999999999876421 011222 33 789999999999988 9
Q ss_pred EEeeCCCeEEEEECCC----CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 82 FSSSIDGSVSEWDLYD----LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
++++.|+.|++||+.+ .+.+..+.+|...|.+++|+|++.
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------------------------------ 126 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD------------------------------------ 126 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST------------------------------------
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC------------------------------------
Confidence 9999999999999988 458889999999999999999832
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCC------ceeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEE
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSD------ELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSW 230 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vw 230 (817)
.+|++++.||.|++||+.++. .......+..|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 127 -------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 127 -------------NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp -------------TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred -------------CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 489999999999999998665 33222445789999999999999 7899999999999999
Q ss_pred ECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCC---cEEEEeCCCC-eEEEEee-cCccCeeEEEEe
Q 003467 231 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG---SVQFWDSRHG-TLLQAHS-FHKGDVNALAAA 303 (817)
Q Consensus 231 d~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg---~i~iwd~~~~-~~~~~~~-~h~~~v~~l~~s 303 (817)
|+.+++.+..+.... ...+|...|.+++|+|++ .+++++.++ .|++||++++ ..+..+. +|...|.+++|+
T Consensus 194 d~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp ETTTTEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC
T ss_pred ECCCCCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC
Confidence 999999888876310 011237889999999997 689999998 9999999986 6777888 899999999999
Q ss_pred c-CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCC
Q 003467 304 P-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 304 ~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
| ++++|++++.|+.|++||+.+++ .+..+..|...|.+++|+ |++.
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~-----------------~~~~~~~~~~~v~~~~~s---------~~~~------- 318 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAE-----------------QLSQFPARGNWCFKTKFA---------PEAP------- 318 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCC-----------------EEEEEECSSSCCCCEEEC---------TTCT-------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCc-----------------cceeecCCCCceEEEEEC---------CCCC-------
Confidence 9 99999999999999999998877 778888999999999998 7762
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
.+|++++.|+.|++|++....
T Consensus 319 ----------------~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 319 ----------------DLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ----------------TEEEECCSSSEEEEEESCCCC
T ss_pred ----------------CEEEEEecCCcEEEEEccCCC
Confidence 399999999999999998754
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-38 Score=328.74 Aligned_cols=322 Identities=14% Similarity=0.164 Sum_probs=263.1
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
.+.|.+++|+|||++ ++++..++.+..|+............|...|.+++|+|++
T Consensus 9 ~~~v~~~~~s~dg~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------------- 63 (337)
T 1gxr_A 9 SKPAYSFHVTADGQM------QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT------------------- 63 (337)
T ss_dssp EEECCEEEECSSSCE------EECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSS-------------------
T ss_pred CCceeEEEECCCCCE------EEeecCCCcEeccccCCccccceeccCCCceEEEEEecCC-------------------
Confidence 457899999999987 8888877777777766655555556799999999999998
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccCCCE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNM 217 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~ 217 (817)
+++++++ ||.|++||+.++........+. +|...|.+++|+|++++
T Consensus 64 -------------------------------~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (337)
T 1gxr_A 64 -------------------------------RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp -------------------------------SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred -------------------------------cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE
Confidence 4888888 9999999998665432223333 78999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCc--eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc
Q 003467 218 LYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK 294 (817)
Q Consensus 218 l~s~~~dg~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 294 (817)
|++++.||.|++||+.+++ ....+. .+...|.+++|+|++ .+++++.+|.|++||+++++.+..+..|.
T Consensus 112 l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 112 LIVGGEASTLSIWDLAAPTPRIKAELT--------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp EEEEESSSEEEEEECCCC--EEEEEEE--------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEcCCCcEEEEECCCCCcceeeecc--------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 9999999999999999887 344444 688899999999998 79999999999999999999999999999
Q ss_pred cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcc
Q 003467 295 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 374 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 374 (817)
..|.+++|+|++++|++++.||.|++||+.+++ .+..+ .|...+.+++++ |++
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----------------~~~~~-~~~~~v~~~~~s---------~~~ 236 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----------------QLQQH-DFTSQIFSLGYC---------PTG 236 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------EEEEE-ECSSCEEEEEEC---------TTS
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----------------eEeee-cCCCceEEEEEC---------CCC
Confidence 999999999999999999999999999998765 22222 345556666665 555
Q ss_pred ccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC
Q 003467 375 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 454 (817)
+ ++++++.|+.+++|++....
T Consensus 237 ~------------------------~l~~~~~~~~i~~~~~~~~~----------------------------------- 257 (337)
T 1gxr_A 237 E------------------------WLAVGMESSNVEVLHVNKPD----------------------------------- 257 (337)
T ss_dssp S------------------------EEEEEETTSCEEEEETTSSC-----------------------------------
T ss_pred C------------------------EEEEEcCCCcEEEEECCCCC-----------------------------------
Confidence 4 66666666666666654211
Q ss_pred CeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeee
Q 003467 455 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR 534 (817)
Q Consensus 455 ~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~ 534 (817)
. .
T Consensus 258 ------------------------------------------------------------------------~------~ 259 (337)
T 1gxr_A 258 ------------------------------------------------------------------------K------Y 259 (337)
T ss_dssp ------------------------------------------------------------------------E------E
T ss_pred ------------------------------------------------------------------------e------E
Confidence 0 1
Q ss_pred cCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC
Q 003467 535 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF 614 (817)
Q Consensus 535 ~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d 614 (817)
.+..|...+.+++|+|++++|++++.||.|++||+.+++.+.... |...|++++|+|++++|++++.|
T Consensus 260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------CSSCEEEEEECTTSCEEEEEETT
T ss_pred EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec------------CCCcEEEEEECCCCCEEEEecCC
Confidence 123445579999999999999999999999999999988876554 78899999999999999999999
Q ss_pred CcEEEEEC
Q 003467 615 GDVYIFNL 622 (817)
Q Consensus 615 g~i~vwd~ 622 (817)
|.|++|++
T Consensus 328 g~i~iw~~ 335 (337)
T 1gxr_A 328 KKATVYEV 335 (337)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999996
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=330.29 Aligned_cols=342 Identities=16% Similarity=0.188 Sum_probs=265.6
Q ss_pred ccCCCceEEEEECCCCCe----EEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 10 DWKPSPVVALATSADDSQ----VAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~----la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
..|..+|..+.+..+.+. +.-... ....+|+.......-.......+| ...|.+++|+|||++ |++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~fspdg~~------la~g~ 83 (393)
T 1erj_A 12 ANHSKPIPPFLLDLDSQSVPDALKKQTN-DYYILYNPALPREIDVELHKSLDH-TSVVCCVKFSNDGEY------LATGC 83 (393)
T ss_dssp SCTTCCCCHHHHCCCSSSSCTTSEEECS-SCEEEECTTSCCCEEEEEEEEEEC-SSCCCEEEECTTSSE------EEEEC
T ss_pred ccccccCCCccccCChhHCcHhHhccCC-ceEEEECCCCCcccCceeEEecCC-CCEEEEEEECCCCCE------EEEEc
Confidence 455555654444333332 223333 345588876544211111222345 789999999999987 88876
Q ss_pred CCCeEEEEECCCCeEEEEEeecCc------------------eEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDF------------------SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~------------------~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
++++++|++.+++.+..+..|.. .|.+++|+|++
T Consensus 84 -~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--------------------------- 135 (393)
T 1erj_A 84 -NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--------------------------- 135 (393)
T ss_dssp -BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS---------------------------
T ss_pred -CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---------------------------
Confidence 68999999999999888765542 38999999998
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcE
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYI 227 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 227 (817)
++|++|+.|+.|+|||+.+++.+ ..+.+|...|.+++|+|++++|++++.|++|
T Consensus 136 -----------------------~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v 189 (393)
T 1erj_A 136 -----------------------KFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189 (393)
T ss_dssp -----------------------SEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -----------------------CEEEEEcCCCeEEEEECCCCcEE---EEEccCCCCEEEEEEcCCCCEEEEecCCCcE
Confidence 59999999999999999866554 7788999999999999999999999999999
Q ss_pred EEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeEEEEe-------ecCccCee
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAH-------SFHKGDVN 298 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~ 298 (817)
++||+.+++....+. +...+.+++|+| ++ .|++++.||.|++||.+++..+..+ .+|...|.
T Consensus 190 ~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 190 RIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp EEEETTTTEEEEEEE---------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred EEEECCCCeeEEEEE---------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEE
Confidence 999999999887775 556789999998 66 7999999999999999999888776 57899999
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 378 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 378 (817)
+++|+|++++|++++.|+.|++||+..... ... ... +.
T Consensus 261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-----------------~~~----------~~~----------~~----- 298 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANN-----------------KSD----------SKT----------PN----- 298 (393)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-------------------------------------------------------
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCC-----------------ccc----------ccC----------CC-----
Confidence 999999999999999999999999876430 000 000 00
Q ss_pred ccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEE
Q 003467 379 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~ 458 (817)
T Consensus 299 -------------------------------------------------------------------------------- 298 (393)
T 1erj_A 299 -------------------------------------------------------------------------------- 298 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc
Q 003467 459 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR 538 (817)
Q Consensus 459 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.+... ..+.+
T Consensus 299 -----------------------------------------------------------------~~~~~-----~~~~~ 308 (393)
T 1erj_A 299 -----------------------------------------------------------------SGTCE-----VTYIG 308 (393)
T ss_dssp -------------------------------------------------------------------CEE-----EEEEC
T ss_pred -----------------------------------------------------------------CCcce-----EEEec
Confidence 00000 11223
Q ss_pred cccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEcc------CCCEEEEEe
Q 003467 539 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------DGQWLAAVN 612 (817)
Q Consensus 539 ~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~------dg~~la~~~ 612 (817)
|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+ |...|.+++|++ ++++||+|+
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----------h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----------HRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----------CCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 445688999999999999999999999999999999999998 899999999986 688999999
Q ss_pred CCCcEEEEECCCc
Q 003467 613 CFGDVYIFNLEIQ 625 (817)
Q Consensus 613 ~dg~i~vwd~~~~ 625 (817)
.||+|+||++...
T Consensus 378 ~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 378 GDCKARIWKYKKI 390 (393)
T ss_dssp TTSEEEEEEEEEC
T ss_pred CCCcEEECccccc
Confidence 9999999998653
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=317.26 Aligned_cols=306 Identities=18% Similarity=0.202 Sum_probs=235.3
Q ss_pred CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 96 YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
.+.+++..+.+|..+|++++|+|+ +||+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~----------------------------------------------------~las 29 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG----------------------------------------------------ILAT 29 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT----------------------------------------------------EEEE
T ss_pred cccccceeeccCCCceeeeccCCC----------------------------------------------------EEEE
Confidence 456778899999999999999974 7999
Q ss_pred EeCCCcEEEEEecCCCceeEeecc-CC-ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC-------ceEEEEEeecC
Q 003467 176 ACDDGCVRIYRITDSDELIYHRSL-PR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-------YEIYRITVGLG 246 (817)
Q Consensus 176 ~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g-------~~~~~~~~~~~ 246 (817)
|+.|+.|++||+..+. ......+ .+ |.+.|.+++|+|++++|++|+.|++|++||+... +.+..+.
T Consensus 30 ~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---- 104 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE---- 104 (330)
T ss_dssp EESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----
T ss_pred EcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc----
Confidence 9999999999997543 2222344 34 9999999999999999999999999999998532 3344443
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCC----CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
+|...|.+++|+|++ +|++++.|++|++||+.. .+++..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 105 ----~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 105 ----GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180 (330)
T ss_dssp --------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ----CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 689999999999999 799999999999999943 35678889999999999999999999999999999999
Q ss_pred EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
+...+. +.++..+.+|...|.+++|+ |++ .+..|
T Consensus 181 ~~~~~~---------------~~~~~~~~~h~~~v~~~~~~---------~~~----------------------~~~~l 214 (330)
T 2hes_X 181 KDYDDD---------------WECVAVLNGHEGTVWSSDFD---------KTE----------------------GVFRL 214 (330)
T ss_dssp EEETTE---------------EEEEEEECCCSSCEEEEEEC---------CSS----------------------SSCEE
T ss_pred ECCCCC---------------eeEEEEccCCCCcEEEEEec---------CCC----------------------CeeEE
Confidence 987642 33677889999999999997 652 12389
Q ss_pred EEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccc
Q 003467 402 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS 481 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~ 481 (817)
++|+.|+.|++|++.......
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~----------------------------------------------------------- 235 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDD----------------------------------------------------------- 235 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTS-----------------------------------------------------------
T ss_pred EEEeCCCeEEEEEecCCCccc-----------------------------------------------------------
Confidence 999999999999976421000
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCC-ccccceeEEEEecCCCEEEEEec
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGH 560 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fspd~~~l~~~~~ 560 (817)
. ..|. .. ..+. .|...|.+++|++++ +|++++.
T Consensus 236 ----------------------~----------~~~~------------~~-~~~~~~h~~~v~~v~~s~~~-~l~s~~~ 269 (330)
T 2hes_X 236 ----------------------Q----------QEWV------------CE-AILPDVHKRQVYNVAWGFNG-LIASVGA 269 (330)
T ss_dssp ----------------------C----------EEEE------------EE-EECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred ----------------------c----------ceeE------------Ee-eecccccccceEEEEEcCCC-EEEEEeC
Confidence 0 0000 00 1122 255679999999665 8999999
Q ss_pred CCcEEEEEccCCc--eeeee-ccCcccccccCCCCCC-ceeEEEEcc--CCCEEEEEeCCCcEEEEECCC
Q 003467 561 DRRIYVVDVSSSE--LLHTF-TPCREEHDREIQPSEP-PITKMFTSS--DGQWLAAVNCFGDVYIFNLEI 624 (817)
Q Consensus 561 dg~i~v~d~~~~~--~~~~~-~~~~~~~~~~~~~~~~-~i~~l~~s~--dg~~la~~~~dg~i~vwd~~~ 624 (817)
||.|++||..+++ ..... .+ |.. .|++++|+| ++++||+++.||+|+|||+++
T Consensus 270 dg~v~iw~~~~~~~~~~~~~~~~-----------h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 270 DGVLAVYEEVDGEWKVFAKRALC-----------HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEESCT-----------TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCEEEEEEcCCCceEEEeccccc-----------cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999998774 23222 33 666 899999999 799999999999999999864
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.4e-38 Score=335.95 Aligned_cols=344 Identities=13% Similarity=0.148 Sum_probs=279.6
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
.+++++|+|++++ |++++.|+.|++||+.+++....+..| ..+....|++++
T Consensus 58 ~~~~~~~s~~g~~------l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------- 109 (420)
T 3vl1_A 58 AGKGNTFEKVGSH------LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM--------------------- 109 (420)
T ss_dssp CCTTCEEEEEETT------EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS---------------------
T ss_pred cccceeeeecCCe------EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC---------------------
Confidence 3558999999998 999999999999999998877666665 445555778887
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG 221 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 221 (817)
++|++|+.||.|++||+.++... ..+.+|.+.|.+++|+|++++|++|
T Consensus 110 -----------------------------~~l~~~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~ 157 (420)
T 3vl1_A 110 -----------------------------RRFILGTTEGDIKVLDSNFNLQR---EIDQAHVSEITKLKFFPSGEALISS 157 (420)
T ss_dssp -----------------------------CEEEEEETTSCEEEECTTSCEEE---EETTSSSSCEEEEEECTTSSEEEEE
T ss_pred -----------------------------CEEEEEECCCCEEEEeCCCccee---eecccccCccEEEEECCCCCEEEEE
Confidence 59999999999999999865544 6778999999999999999999999
Q ss_pred eCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec---CccCe
Q 003467 222 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDV 297 (817)
Q Consensus 222 ~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v 297 (817)
+.|+.|++||+.+++.+..+. +|...|.+++|+|++ .|++++.||.|++||+++++.+..+.. |...|
T Consensus 158 s~d~~i~iwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNPRTLI--------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp ETTSEEEEEETTTCCCCEEEE--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred eCCCeEEEEeCCCCcCceEEc--------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 999999999999999998887 799999999999999 799999999999999999999998875 56678
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
.++++.+++... ....|...+.+++|+ |+++
T Consensus 230 ~~~~~~~~~~~~--------------------------------------~~~~~~~~v~~~~~s---------~~~~-- 260 (420)
T 3vl1_A 230 NSIALFVGTDRQ--------------------------------------LHEISTSKKNNLEFG---------TYGK-- 260 (420)
T ss_dssp EEEEEEECCCSS--------------------------------------CGGGCCCCCCTTCSS---------CTTE--
T ss_pred cEEEEecCCcce--------------------------------------eeecccCcccceEEc---------CCCC--
Confidence 888887654321 123345667777776 7775
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeE
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i 457 (817)
+|++|+.||.|++||+.+..
T Consensus 261 ----------------------~l~~~~~dg~i~i~d~~~~~-------------------------------------- 280 (420)
T 3vl1_A 261 ----------------------YVIAGHVSGVITVHNVFSKE-------------------------------------- 280 (420)
T ss_dssp ----------------------EEEEEETTSCEEEEETTTCC--------------------------------------
T ss_pred ----------------------EEEEEcCCCeEEEEECCCCc--------------------------------------
Confidence 88999999999999876421
Q ss_pred EEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCC
Q 003467 458 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP 537 (817)
Q Consensus 458 ~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 537 (817)
... ....
T Consensus 281 ---------------------------------------------------------------------~~~----~~~~ 287 (420)
T 3vl1_A 281 ---------------------------------------------------------------------QTI----QLPS 287 (420)
T ss_dssp ---------------------------------------------------------------------EEE----EECC
T ss_pred ---------------------------------------------------------------------eeE----Eccc
Confidence 000 0012
Q ss_pred ccccceeEEEEecCCC-EEEEEecCCcEEEEEccCCce-eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC
Q 003467 538 RKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG 615 (817)
Q Consensus 538 ~~~~~i~~~~fspd~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg 615 (817)
.|...+.+++|+|+++ +|++++.||.|++||+.+++. +..+..+ |...|+++.+ +++++|++++.||
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~v~~~~~-~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN----------EGTPINNVYF-AAGALFVSSGFDT 356 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES----------TTSCEEEEEE-ETTEEEEEETTTE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc----------CCCCceEEEe-CCCCEEEEecCCc
Confidence 3445799999999999 999999999999999988754 6777653 6677888855 6889999999999
Q ss_pred cEEEEECCCcce---------EEEEecCCCCCeEEEEecCCCCC---eEEEEecCCeEEEEEcCC
Q 003467 616 DVYIFNLEIQRQ---------HWFISRLEGASVTAAGFPPQNNN---VLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 616 ~i~vwd~~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~---~l~~~~~d~~i~vwd~~~ 668 (817)
.|++|++..... ...+ ..+...|.+++|+| ++. .|++++.+|.+.+|+++.
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFETPTFL-VSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTSCEEE-CCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred cEEEEeccCCCCCccceeccCccEE-ccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 999999876321 1122 33457899999999 888 788888899999999875
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.6e-37 Score=313.62 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=251.9
Q ss_pred eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC
Q 003467 194 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS 272 (817)
Q Consensus 194 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~ 272 (817)
.....+.+|.+.|.+++|+|++++|++++.||.|++|++.+++....+. +|...|.+++|+|++ .|++++.
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEET
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--------cCCCceEEEEEcCCCCEEEEECC
Confidence 3346788999999999999999999999999999999999999888776 688999999999999 7999999
Q ss_pred CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 352 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (817)
||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++ .+..+..|
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------~~~~~~~~ 148 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------------CLKTLPAH 148 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------------EEEEECCC
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------------EEEEecCC
Confidence 9999999999999999999999999999999999999999999999999998876 67788889
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
...|.+++++ |+++ +|++++.|+.|++||+.+....
T Consensus 149 ~~~v~~~~~~---------~~~~------------------------~l~~~~~d~~i~~wd~~~~~~~----------- 184 (312)
T 4ery_A 149 SDPVSAVHFN---------RDGS------------------------LIVSSSYDGLCRIWDTASGQCL----------- 184 (312)
T ss_dssp SSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEEETTTCCEE-----------
T ss_pred CCcEEEEEEc---------CCCC------------------------EEEEEeCCCcEEEEECCCCcee-----------
Confidence 9999999997 7775 9999999999999998642200
Q ss_pred CceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 512 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 512 (817)
.
T Consensus 185 ---------------------------------------------------~---------------------------- 185 (312)
T 4ery_A 185 ---------------------------------------------------K---------------------------- 185 (312)
T ss_dssp ---------------------------------------------------E----------------------------
T ss_pred ---------------------------------------------------e----------------------------
Confidence 0
Q ss_pred ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 592 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 592 (817)
.....+...+..++|+|++++|++++.|+.|++||+.+++.+..+.+ |
T Consensus 186 ---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------~ 233 (312)
T 4ery_A 186 ---------------------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-----------H 233 (312)
T ss_dssp ---------------------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS-----------S
T ss_pred ---------------------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe-----------c
Confidence 00011223578899999999999999999999999999999988887 4
Q ss_pred CCc---eeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe--cCCeEEEEEcC
Q 003467 593 EPP---ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT--SSNQVYVFDVE 667 (817)
Q Consensus 593 ~~~---i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~--~d~~i~vwd~~ 667 (817)
... +......+++++|++++.||.|++||+.+++....+. .|...|.+++|+| ++.+|++++ .|++|++|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 433 3333445789999999999999999999998877764 4667999999999 999999987 69999999875
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-39 Score=348.98 Aligned_cols=261 Identities=16% Similarity=0.132 Sum_probs=208.0
Q ss_pred eeeeeccCCCceEEEEECCCC---------CeEEEE-------------------ecCCcEEEEecCCCCCCcEEEEEEc
Q 003467 5 RNSSIDWKPSPVVALATSADD---------SQVAAA-------------------REDGSLEIWLVSPGTSGWHCQLTVH 56 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg---------~~la~~-------------------~~dg~i~iwd~~~~~~~~~~~~~~~ 56 (817)
|+-+.-.+++.|.+|+|+|++ ++||+| +.|++|+|||+.+++.......++.
T Consensus 125 r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~ 204 (524)
T 2j04_B 125 RRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV 204 (524)
T ss_dssp SCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE
T ss_pred cceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE
Confidence 344444467888888888876 677764 4678999999988764333334455
Q ss_pred CCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeE-----------EEEEeecCceEEEEeeecCCCccce
Q 003467 57 GDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQ-----------KIVLQSIDFSIWQMAVAPSNSSLMH 125 (817)
Q Consensus 57 g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~i~~~~~s~~~~~~~~ 125 (817)
+| .+.|.+|+|+|++.......+||+++.||+|++||+.+++. ...+.+|...|++++|++++
T Consensus 205 ~~-~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~----- 278 (524)
T 2j04_B 205 HS-FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT----- 278 (524)
T ss_dssp EC-CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-----
T ss_pred ec-CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-----
Confidence 55 68899999999732100113599999999999999987642 24778899999999999865
Q ss_pred eeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce
Q 003467 126 AVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR 205 (817)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 205 (817)
.|++|+.||+|++||+.++.... ..+.+|.+.
T Consensus 279 ----------------------------------------------~lasgs~DgtV~lWD~~~~~~~~--~~~~~H~~~ 310 (524)
T 2j04_B 279 ----------------------------------------------TVVCGFKNGFVAEFDLTDPEVPS--FYDQVHDSY 310 (524)
T ss_dssp ----------------------------------------------EEEEEETTSEEEEEETTBCSSCS--EEEECSSSC
T ss_pred ----------------------------------------------eEEEEeCCCEEEEEECCCCCCce--EEeeccccc
Confidence 89999999999999998654331 457789999
Q ss_pred EEEE--EEccCC-CEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeC
Q 003467 206 VLSV--TWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS 281 (817)
Q Consensus 206 v~~v--~~s~dg-~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~ 281 (817)
|.+| +|+|+| .+|++|+.|++|++||+++++.+..+... .....|++++|+|++ .+++++.|++|++||+
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~ 384 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE------CSCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc------cccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence 9999 578888 89999999999999999998877666521 111247899999988 7899999999999999
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
+++.++.++.+|.+.|.+++|+|++++|++|+.||+|++|++..
T Consensus 385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 385 RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 99998889999999999999999999999999999999999754
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-37 Score=322.50 Aligned_cols=323 Identities=17% Similarity=0.215 Sum_probs=271.6
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
.|.++|.+++|||||++||++..++.+.+|+..... ......+| ...|.+++|+|++++ |++++ ||.|
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~------l~~~~-dg~i 74 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA----RQINTLNH-GEVVCAVTISNPTRH------VYTGG-KGCV 74 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE----EEEEEECC-SSCCCEEEECSSSSE------EEEEC-BSEE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc----ccceeccC-CCceEEEEEecCCcE------EEEcC-CCeE
Confidence 456789999999999999999888877777654432 23333455 889999999999987 99888 9999
Q ss_pred EEEECCCCeE---EEEEe--ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 91 SEWDLYDLKQ---KIVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 91 ~vwd~~~~~~---~~~~~--~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
++||+.+++. ...+. .|...|.+++|+|++
T Consensus 75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------- 109 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--------------------------------------------- 109 (337)
T ss_dssp EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---------------------------------------------
T ss_pred EEEECCCCCceeeeecccccCCCCcEEEEEEcCCC---------------------------------------------
Confidence 9999987653 33443 789999999999998
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
++|++++.||.|++||+.++. ......+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 110 -----~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--- 180 (337)
T 1gxr_A 110 -----CTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--- 180 (337)
T ss_dssp -----SEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred -----CEEEEEcCCCcEEEEECCCCC-cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee---
Confidence 589999999999999998654 22336677899999999999999999999999999999999998888876
Q ss_pred CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 246 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.|...|.+++|+|++ .+++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++|++.
T Consensus 181 -----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 181 -----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp -----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred -----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 688899999999999 79999999999999999999888775 67889999999999999999999999999998
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
+.. ...+..|...|.+++++ |+++ +|+++
T Consensus 255 ~~~------------------~~~~~~~~~~v~~~~~~---------~~~~------------------------~l~~~ 283 (337)
T 1gxr_A 255 KPD------------------KYQLHLHESCVLSLKFA---------YCGK------------------------WFVST 283 (337)
T ss_dssp SSC------------------EEEECCCSSCEEEEEEC---------TTSS------------------------EEEEE
T ss_pred CCC------------------eEEEcCCccceeEEEEC---------CCCC------------------------EEEEe
Confidence 765 23567899999999998 7776 99999
Q ss_pred cCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceee
Q 003467 405 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 484 (817)
Q Consensus 405 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~ 484 (817)
+.|+.|++|++.+....
T Consensus 284 ~~dg~i~~~~~~~~~~~--------------------------------------------------------------- 300 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGASI--------------------------------------------------------------- 300 (337)
T ss_dssp ETTSEEEEEETTTCCEE---------------------------------------------------------------
T ss_pred cCCCcEEEEECCCCeEE---------------------------------------------------------------
Confidence 99999999998753310
Q ss_pred eeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEee
Q 003467 485 QVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELK 520 (817)
Q Consensus 485 ~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~ 520 (817)
....+...+.+++++|++++|++ +.++.+++|++.
T Consensus 301 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 301 -FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 01112367899999999999888 478999999874
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-38 Score=342.56 Aligned_cols=333 Identities=13% Similarity=0.096 Sum_probs=269.1
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEE
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWD 94 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd 94 (817)
.+++++|+|+|++||+|+.||.|++||+.+++. ...+.++ ..+...+|+|++++ |++++.|+.|++||
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~--~~~~~~~~~~~~~~------l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG----SKMLKRA--DYTAVDTAKLQMRR------FILGTTEGDIKVLD 125 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEET----TTTSCSC--CEEEEEEECSSSCE------EEEEETTSCEEEEC
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccce----eeEEecC--CceEEEEEecCCCE------EEEEECCCCEEEEe
Confidence 455899999999999999999999999987653 2233333 45556678999987 99999999999999
Q ss_pred CCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 95 LYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
+.+++....+.+|...|.+++|+|++ ++|+
T Consensus 126 ~~~~~~~~~~~~h~~~v~~~~~~~~~--------------------------------------------------~~l~ 155 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEITKLKFFPSG--------------------------------------------------EALI 155 (420)
T ss_dssp TTSCEEEEETTSSSSCEEEEEECTTS--------------------------------------------------SEEE
T ss_pred CCCcceeeecccccCccEEEEECCCC--------------------------------------------------CEEE
Confidence 99999999888999999999999998 5899
Q ss_pred EEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc-
Q 003467 175 LACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE- 253 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~- 253 (817)
+|+.||.|++||+.+++.+ ..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+.... .+.
T Consensus 156 s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~ 227 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNP---RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE-----NPHD 227 (420)
T ss_dssp EEETTSEEEEEETTTCCCC---EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT-----BTTC
T ss_pred EEeCCCeEEEEeCCCCcCc---eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC-----CCCC
Confidence 9999999999999877666 6778999999999999999999999999999999999999888876321 233
Q ss_pred --------------------eeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee-cCccCeeEEEEecCCC-EEE
Q 003467 254 --------------------LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHN-RVF 310 (817)
Q Consensus 254 --------------------~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~-~l~ 310 (817)
..+.+++|+|++ .|++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|+
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence 344445567888 79999999999999999988877764 4789999999999998 999
Q ss_pred EEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc-CCCccceeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 311 STGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 311 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
+++.||.|++||+.++.. .+..+.. |...|.++.+ ++++
T Consensus 308 ~g~~dg~i~vwd~~~~~~----------------~~~~~~~~~~~~v~~~~~----------~~~~-------------- 347 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPEC----------------PVGEFLINEGTPINNVYF----------AAGA-------------- 347 (420)
T ss_dssp EEETTSEEEEEETTCTTS----------------CSEEEEESTTSCEEEEEE----------ETTE--------------
T ss_pred EEeCCCeEEEEEcCCCcC----------------chhhhhccCCCCceEEEe----------CCCC--------------
Confidence 999999999999987652 2344454 6777888876 4554
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 469 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~ 469 (817)
+|++++.|+.|++|++........... .+
T Consensus 348 ----------~l~s~~~d~~v~iw~~~~~~~~~~~~~-----------------~~------------------------ 376 (420)
T 3vl1_A 348 ----------LFVSSGFDTSIKLDIISDPESERPAIE-----------------FE------------------------ 376 (420)
T ss_dssp ----------EEEEETTTEEEEEEEECCTTCCSCEEC-----------------TT------------------------
T ss_pred ----------EEEEecCCccEEEEeccCCCCCcccee-----------------cc------------------------
Confidence 999999999999999876321110000 00
Q ss_pred cCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc----EEEEEcCCceEEEEeec
Q 003467 470 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM----LFAYSDHVKPSLFELKK 521 (817)
Q Consensus 470 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~----~la~~~~~~i~l~~~~~ 521 (817)
.......+...+.+++|+|+++ +++++.++.+.+|+++.
T Consensus 377 -------------~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 -------------TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -------------SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -------------CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 0011223346789999999998 78889999999998753
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-39 Score=344.08 Aligned_cols=317 Identities=14% Similarity=0.153 Sum_probs=257.3
Q ss_pred EEEEE----------eCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC----Cce
Q 003467 172 RVALA----------CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL----GYE 237 (817)
Q Consensus 172 ~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~----g~~ 237 (817)
++++| +.|+.|+|||+.++........ ..|...|.+++|+|++++|++++.||.|++||+.+ .+.
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~ 105 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS 105 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccc
Confidence 77777 8999999999986543211123 35889999999999999999999999999999987 335
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecC-C-eEEEEcCCCcEEEEeCCCCe------EEE---EeecCccCeeEEEEecC-
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGT------LLQ---AHSFHKGDVNALAAAPS- 305 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~-~-~l~s~~~dg~i~iwd~~~~~------~~~---~~~~h~~~v~~l~~s~~- 305 (817)
+..+. .|...|.+++|+|+ + .|++++.||.|++||+.+++ ... .+..|...|.+++|+|+
T Consensus 106 ~~~~~--------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (416)
T 2pm9_A 106 MARFS--------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL 177 (416)
T ss_dssp EEECC--------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC
T ss_pred hhhcc--------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC
Confidence 55554 68999999999998 5 79999999999999999876 332 34678999999999999
Q ss_pred CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC------CCccceeEeecccCCCCCCCccccccc
Q 003467 306 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH------THDVRALTVAVPISREDPLPEDKVKRS 379 (817)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~~~~~ 379 (817)
+.+|++++.|+.|++||+.+++ .+..+..| ...|.+++|+ |++.
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~---- 227 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKK-----------------EVIHLSYTSPNSGIKQQLSVVEWH---------PKNS---- 227 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTE-----------------EEEEECCCCCSSCCCCCEEEEEEC---------SSCT----
T ss_pred CcEEEEEcCCCCEEEEECCCCC-----------------cceEEeccccccccCCceEEEEEC---------CCCC----
Confidence 7899999999999999998876 45555554 6778888886 5542
Q ss_pred cCCCCCccccccccccCCCcEEEEecCCC---eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCe
Q 003467 380 RGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR 456 (817)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 456 (817)
.++++++.|+ .|++||+....
T Consensus 228 -------------------~~l~~~~~d~~~~~i~~~d~~~~~------------------------------------- 251 (416)
T 2pm9_A 228 -------------------TRVATATGSDNDPSILIWDLRNAN------------------------------------- 251 (416)
T ss_dssp -------------------TEEEEEECCSSSCCCCEEETTSTT-------------------------------------
T ss_pred -------------------CEEEEEECCCCCceEEEEeCCCCC-------------------------------------
Confidence 3788888887 88888776421
Q ss_pred EEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC
Q 003467 457 LDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL 536 (817)
Q Consensus 457 i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 536 (817)
... ..+
T Consensus 252 ---------------------------------------------------------------------~~~-----~~~ 257 (416)
T 2pm9_A 252 ---------------------------------------------------------------------TPL-----QTL 257 (416)
T ss_dssp ---------------------------------------------------------------------SCS-----BCC
T ss_pred ---------------------------------------------------------------------CCc-----EEe
Confidence 000 112
Q ss_pred C-ccccceeEEEEec-CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCC-CEEEEEeC
Q 003467 537 P-RKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNC 613 (817)
Q Consensus 537 ~-~~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~~ 613 (817)
. .|...+.+++|+| ++++|++++.||.|++||+.+++.+.++.. |...|++++|+|++ ++|++++.
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-----------RGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-----------SSSCCCCEEECTTCTTEEEECCS
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-----------CCCceEEEEECCCCCCEEEEEec
Confidence 2 4556799999999 999999999999999999999999999988 89999999999999 89999999
Q ss_pred CCcEEEEECCCcceEEEE----------------------------------ecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 614 FGDVYIFNLEIQRQHWFI----------------------------------SRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~~~----------------------------------~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
||.|++||+.+....... +..+..++++++|+| ++++|++++.|+
T Consensus 327 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~ 405 (416)
T 2pm9_A 327 DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGK 405 (416)
T ss_dssp SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSS
T ss_pred CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCC
Confidence 999999999876532111 111446778999999 999999999999
Q ss_pred eEEEEEcCCC
Q 003467 660 QVYVFDVEAK 669 (817)
Q Consensus 660 ~i~vwd~~~~ 669 (817)
.|++|++.++
T Consensus 406 ~v~~w~~~~~ 415 (416)
T 2pm9_A 406 GVSITNPKIS 415 (416)
T ss_dssp CBCCBCCCCC
T ss_pred eEEEEEeccC
Confidence 9999999865
No 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=320.30 Aligned_cols=294 Identities=16% Similarity=0.210 Sum_probs=262.3
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
+...+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+.+| ...|.+++|+|++++ |+++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~------l~s~ 92 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGH-TGTIWSIDVDCFTKY------CVTG 92 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----EEEEECCC-SSCEEEEEECTTSSE------EEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----hhhhhhhc-CCcEEEEEEcCCCCE------EEEE
Confidence 455678999999999999999999999999999999999887 57778877 789999999999987 9999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+.|++|++||+.+++++..+. +...|.+++|+|++
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-------------------------------------------- 127 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-------------------------------------------- 127 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS--------------------------------------------
T ss_pred eCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC--------------------------------------------
Confidence 999999999999999999888 88999999999998
Q ss_pred cccccCCEEEEEeCC-----CcEEEEEecCCCcee--------EeeccCCccc--eEEEEEEccCCCEEEEeeCCCcEEE
Q 003467 165 QSVVEDRRVALACDD-----GCVRIYRITDSDELI--------YHRSLPRVSG--RVLSVTWSADGNMLYSGSSDGYIRS 229 (817)
Q Consensus 165 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--------~~~~~~~h~~--~v~~v~~s~dg~~l~s~~~dg~i~v 229 (817)
+.+++++.+ |.|++||+....... ....+..|.+ .+.+++|+|++++|++++.||.|++
T Consensus 128 ------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 128 ------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 489999988 999999998554321 1133445555 8999999999999999999999999
Q ss_pred EECCC-CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC
Q 003467 230 WDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 230 wd~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
||+.+ ++.+..+. .|...|.+++|+|++ .|++++.||.|++||+++++.+..+. +...+.+++|+|+++
T Consensus 202 ~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 202 YDVSNNYEYVDSID--------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE 272 (369)
T ss_dssp EETTTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred EECCCCcEeEEEEe--------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCc
Confidence 99998 67777776 688999999999999 79999999999999999999988887 788999999999999
Q ss_pred EEEEEccCC--------------cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCc
Q 003467 308 RVFSTGSDG--------------QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 373 (817)
Q Consensus 308 ~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 373 (817)
++++++.++ .+++|+..++. .+..+..|...|.+++|+ |+
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------------~~~~~~~~~~~v~~~~~s---------~~ 326 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-----------------EIGRVQGHFGPLNTVAIS---------PQ 326 (369)
T ss_dssp EEEEEECCC-------------CEEEEEETTTCC-----------------EEEEEECCSSCEEEEEEC---------TT
T ss_pred eEEEeecCCCceEEEEecCCCcceeEEEecCCCc-----------------chhheecccCcEEEEEEC---------CC
Confidence 999999988 89999988877 677889999999999998 77
Q ss_pred cccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 374 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
++ +|++++.||.|++|++....
T Consensus 327 ~~------------------------~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 327 GT------------------------SYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SS------------------------EEEEEETTSEEEEEEECHHH
T ss_pred CC------------------------EEEEEcCCCeEEEEECcccc
Confidence 76 99999999999999998643
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-36 Score=314.59 Aligned_cols=301 Identities=17% Similarity=0.200 Sum_probs=243.7
Q ss_pred eEEEEEeecCceEEEEee-----ec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 99 KQKIVLQSIDFSIWQMAV-----AP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 99 ~~~~~~~~~~~~i~~~~~-----s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
++...+.+|...|++++| ++ ++ ++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~--------------------------------------------------~~ 41 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDS--------------------------------------------------PV 41 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCC--------------------------------------------------CE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCC--------------------------------------------------CE
Confidence 456788999999999999 44 44 59
Q ss_pred EEEEeCCCcEEEEEecCCCc----eeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 173 VALACDDGCVRIYRITDSDE----LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
|++|+.|+.|++||+.+... ......+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~------ 115 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV------ 115 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE------
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------
Confidence 99999999999999974431 12346788999999999999999999999999999999999999998887
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee---cCccCeeEEEEecCC----------CEEEEEcc
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS---FHKGDVNALAAAPSH----------NRVFSTGS 314 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~----------~~l~~~~~ 314 (817)
+|...|.+++|+|++ .|++++.|++|++||+.. ....... .|...|.+++|+|++ .++++++.
T Consensus 116 --~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 116 --GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp --CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET
T ss_pred --CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC
Confidence 799999999999999 799999999999999984 4443333 688999999999987 78999999
Q ss_pred CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 315 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 315 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
|+.|++||.. .. ....+..|...|.+++|+ |+++
T Consensus 193 d~~i~iwd~~-~~-----------------~~~~~~~h~~~v~~~~~s---------~~g~------------------- 226 (343)
T 2xzm_R 193 DGRLKVWNTN-FQ-----------------IRYTFKAHESNVNHLSIS---------PNGK------------------- 226 (343)
T ss_dssp TSEEEEEETT-TE-----------------EEEEEECCSSCEEEEEEC---------TTSS-------------------
T ss_pred CCEEEEEcCC-Cc-----------------eeEEEcCccccceEEEEC---------CCCC-------------------
Confidence 9999999943 22 456778999999999998 8886
Q ss_pred cCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 474 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 474 (817)
+|++|+.|+.|++||+......
T Consensus 227 -----~l~sgs~dg~v~iwd~~~~~~~----------------------------------------------------- 248 (343)
T 2xzm_R 227 -----YIATGGKDKKLLIWDILNLTYP----------------------------------------------------- 248 (343)
T ss_dssp -----EEEEEETTCEEEEEESSCCSSC-----------------------------------------------------
T ss_pred -----EEEEEcCCCeEEEEECCCCccc-----------------------------------------------------
Confidence 9999999999999998532100
Q ss_pred CCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEee------ecCCccccceeEEEE
Q 003467 475 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK------RQLPRKLQFAHSMIF 548 (817)
Q Consensus 475 ~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~f 548 (817)
...+ .....|.+++|+|++++++++.++.+++|++.... ...+..+.. ....+|...+.+++|
T Consensus 249 --------~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 249 --------QREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS-KAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp --------SEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC-SCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred --------ceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC-CCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 0000 11245889999999999999999999999987522 111111110 011256678999999
Q ss_pred ecCCCEEEEEecCCcEEEEEccCCc
Q 003467 549 SYDSSQLIIAGHDRRIYVVDVSSSE 573 (817)
Q Consensus 549 spd~~~l~~~~~dg~i~v~d~~~~~ 573 (817)
+|+|++|++|+.||.|++|++++++
T Consensus 318 sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 318 NALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999987653
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-36 Score=315.50 Aligned_cols=302 Identities=17% Similarity=0.218 Sum_probs=253.0
Q ss_pred eeccCCCceEEEEECCC-CCeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 8 SIDWKPSPVVALATSAD-DSQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 8 ~~~~h~~~I~~la~spd-g~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
-+++|.+.|++|+|+|+ +++||+|+.||+|+|||+.+.+.. ..+...+.+| ...|.+++|+|++++ |++++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~------l~s~~ 105 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQF------ALSGS 105 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSE------EEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCE------EEEEc
Confidence 36899999999999998 689999999999999999876543 2345677777 799999999999988 99999
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.|+.|++|+...+........+...+..+.+++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 140 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN--------------------------------------------- 140 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---------------------------------------------
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecC---------------------------------------------
Confidence 99999999999999999999999999999999988
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC--CEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG--NMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg--~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
+.+++++.|+.+++||...... ....+.+|...+.+++|++++ .++++++.|+.|++||+.+++.+..+.
T Consensus 141 -----~~l~s~s~d~~~~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~- 212 (340)
T 4aow_A 141 -----RQIVSGSRDKTIKLWNTLGVCK--YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI- 212 (340)
T ss_dssp -----SCEEEEETTSCEEEECTTSCEE--EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred -----ccceeecCCCeEEEEEeCCCce--EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-
Confidence 4899999999999999864433 235677899999999998875 578899999999999999999888876
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
+|...|.+++|+|++ .|++++.||.|++||+++++.+..+.. ...|.+++|+|++. +++++.|+.|++||
T Consensus 213 -------~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd 283 (340)
T 4aow_A 213 -------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWD 283 (340)
T ss_dssp -------CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEE
T ss_pred -------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEE
Confidence 789999999999999 799999999999999999999988876 46899999999875 55667899999999
Q ss_pred eecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 402 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 402 (817)
+.+..... .............|...|.+++|+ |+++ +|+
T Consensus 284 ~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~s---------~dg~------------------------~l~ 322 (340)
T 4aow_A 284 LEGKIIVD--------ELKQEVISTSSKAEPPQCTSLAWS---------ADGQ------------------------TLF 322 (340)
T ss_dssp TTTTEEEE--------EECCC-------CCCCCEEEEEEC---------TTSS------------------------EEE
T ss_pred CCCCeEEE--------eccccceeeeccCCCCCEEEEEEC---------CCCC------------------------EEE
Confidence 87754100 000001223446788999999998 8886 999
Q ss_pred EecCCCeEEEEeCCccc
Q 003467 403 SAGDDTKLFAYCANEFT 419 (817)
Q Consensus 403 s~~~dg~i~~~~~~~~~ 419 (817)
+|+.||.|++||+.++.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999998754
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-36 Score=324.42 Aligned_cols=277 Identities=18% Similarity=0.294 Sum_probs=242.8
Q ss_pred eeeeccCCCce-EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 6 NSSIDWKPSPV-VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 6 ~r~~~~h~~~I-~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
.+.+.+|.+.| +| ++++|++||+|+.||.|+|||+.+++ +...+.+| ...|.+++|+ +.+ |+++
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h-~~~v~~~~~~--~~~------l~s~ 175 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGH-TGGVWSSQMR--DNI------IISG 175 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCC----EEEECCCC-SSCEEEEEEE--TTE------EEEE
T ss_pred eEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCc----EEEEEcCC-CCCEEEEEec--CCE------EEEE
Confidence 35678999875 55 45569999999999999999999887 57788887 7899999998 444 9999
Q ss_pred eCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
+.||+|++||+.+++++..+.+|...|.++++++
T Consensus 176 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---------------------------------------------- 209 (445)
T 2ovr_B 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---------------------------------------------- 209 (445)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----------------------------------------------
T ss_pred eCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC----------------------------------------------
Confidence 9999999999999999999999999999999963
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
+.+++|+.||.|++||+.++..+ ..+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 210 ------~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 276 (445)
T 2ovr_B 210 ------KRVVSGSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-- 276 (445)
T ss_dssp ------TEEEEEETTSEEEEEESSSCCEE---EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC--
T ss_pred ------CEEEEEeCCCEEEEEECCCCcEE---EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec--
Confidence 38999999999999999877665 677889999999999 78899999999999999999999888886
Q ss_pred cCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 245 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
+|...|.++.| ....+++++.||.|++||+++++.+..+.+|...+.++.++ ++++++++.||.|++||+.
T Consensus 277 ------~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 277 ------GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp ------CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred ------CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC
Confidence 68889999999 33389999999999999999999999999999999988875 6799999999999999998
Q ss_pred cccCCCCCCCCCccccceEEEeecccc---CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRA---HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML 401 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (817)
+++ .+..+.. |...|.++++. +.+|
T Consensus 348 ~~~-----------------~~~~~~~~~~~~~~v~~~~~~-----------------------------------~~~l 375 (445)
T 2ovr_B 348 TGQ-----------------CLQTLQGPNKHQSAVTCLQFN-----------------------------------KNFV 375 (445)
T ss_dssp TCC-----------------EEEEECSTTSCSSCEEEEEEC-----------------------------------SSEE
T ss_pred CCc-----------------EEEEEccCCCCCCCEEEEEEC-----------------------------------CCEE
Confidence 776 5555554 78889988873 1389
Q ss_pred EEecCCCeEEEEeCCc
Q 003467 402 ISAGDDTKLFAYCANE 417 (817)
Q Consensus 402 ~s~~~dg~i~~~~~~~ 417 (817)
++|+.||.|++||+.+
T Consensus 376 ~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEETTSEEEEEETTT
T ss_pred EEEeCCCeEEEEECCC
Confidence 9999999999999875
No 53
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.2e-37 Score=327.83 Aligned_cols=307 Identities=15% Similarity=0.134 Sum_probs=256.6
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC--CcEEEEEEcCCCCCcEEEEEEeec----C---CC
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS--GWHCQLTVHGDPKSRISSLVWCHA----G---KM 74 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~g~~~~~V~~l~~s~~----~---~~ 74 (817)
...+.+.+|.+.|++++|+| ++||+|+.||.|+|||+.+++. .+.+...+.+| ...|.+++|+|+ + ++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCccccE
Confidence 34566789999999999999 8999999999999999998761 11135666676 789999999999 8 87
Q ss_pred CCCCceEEEeeCCCeEEEEECCCCeE-----EEEEeec-----CceEEEEeee----cCCCccceeeccCccccCccccC
Q 003467 75 GLPGGRLFSSSIDGSVSEWDLYDLKQ-----KIVLQSI-----DFSIWQMAVA----PSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 75 ~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~~-----~~~i~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
|++++.|+.|++||+.+++. ...+..| ...|.+++|+ |++
T Consensus 84 ------l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------- 137 (397)
T 1sq9_A 84 ------VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-------------------- 137 (397)
T ss_dssp ------EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------------------------
T ss_pred ------EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC--------------------
Confidence 99999999999999999887 8888888 5999999999 887
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCE-EEEEeCCCcEEEEEecC------CCceeEe--ecc-------CCccc
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRR-VALACDDGCVRIYRITD------SDELIYH--RSL-------PRVSG 204 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~------~~~~~~~--~~~-------~~h~~ 204 (817)
+. |++++.||.|++||+.+ +..+... ..+ ..|..
T Consensus 138 ------------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (397)
T 1sq9_A 138 ------------------------------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187 (397)
T ss_dssp ------------------------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC
T ss_pred ------------------------------ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC
Confidence 47 99999999999999987 4444200 044 45889
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC---C---ceeEEEeEEecCC-eEEEEcCC---C
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG---P---ELCIWSLLSLRCG-TLVSADST---G 274 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~---~---~~~v~~v~~~~~~-~l~s~~~d---g 274 (817)
.|.+++|+|++ +|++++.||.|++||+++++.+..+. . | ...|.+++|+|++ .|++++.| |
T Consensus 188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g 258 (397)
T 1sq9_A 188 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE--------SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258 (397)
T ss_dssp CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--------CCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred CceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe--------ccccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence 99999999999 99999999999999999999988887 4 6 8899999999999 78999999 9
Q ss_pred cEEEEeCCCCeEEEEeec-------------CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccc
Q 003467 275 SVQFWDSRHGTLLQAHSF-------------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIK 341 (817)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~-------------h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (817)
.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++|++.+++
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------- 324 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-------------- 324 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------------
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--------------
Confidence 999999999999999998 99999999999999999999999999999998876
Q ss_pred eEEEeeccc------cC---------------CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 342 KWIYVGSVR------AH---------------THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 342 ~~~~~~~~~------~h---------------~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
.+..+. .| ...|.+++|+ |+++... ....+..+
T Consensus 325 ---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~---------~~g~~~~--------------~~~~~~~~ 378 (397)
T 1sq9_A 325 ---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL---------KKGWRSG--------------MGADLNES 378 (397)
T ss_dssp ---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE---------CTTTSBS--------------TTCTTSCE
T ss_pred ---eeEEEecccCcccchhhhhccccccccccCCceeEEEec---------ccccccc--------------ccccccce
Confidence 555666 66 8999999998 6651000 00001139
Q ss_pred EEEecCCCeEEEEeCCcc
Q 003467 401 LISAGDDTKLFAYCANEF 418 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~~ 418 (817)
|++++.||.|++|++.+.
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999998753
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=334.31 Aligned_cols=376 Identities=11% Similarity=0.110 Sum_probs=285.6
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee-cCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH-AGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~-~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
....|+|+++.+|++. .|+.. ++ +...+..+|.+.|++++|+| ++++ |++++.||+|++||+
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~~~-g~----~~~~~~~~h~~~V~~~~~s~~~~~~------l~s~s~dg~v~vwd~ 93 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGNLR-GK----LIATLMENEPNSITSSAVSPGETPY------LITGSDQGVIKIWNL 93 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGGCC-CC----EEEEECTTTTSCEEEEEEECSSSCE------EEEEETTSEEEEEEH
T ss_pred chhhcCCccccccccc------ccccc-ce----EEeeeccCCCCceEEEEECCCCCCE------EEEecCCceEEEeEC
Confidence 3345789999988765 48844 44 57788444589999999999 9987 999999999999999
Q ss_pred CC---Ce---EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 96 YD---LK---QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 96 ~~---~~---~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
.+ +. +...+ .|...|.+++|+|++
T Consensus 94 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~------------------------------------------------- 123 (437)
T 3gre_A 94 KEIIVGEVYSSSLTY-DCSSTVTQITMIPNF------------------------------------------------- 123 (437)
T ss_dssp HHHHTTCCCSCSEEE-ECSSCEEEEEECTTS-------------------------------------------------
T ss_pred cccccCcccceeeec-cCCCCEEEEEEeCCC-------------------------------------------------
Confidence 87 43 23444 499999999999988
Q ss_pred CCEEEEEeCCCcEEEEEec---CCCceeEe-----e--ccCC--ccceEEEEE--EccCCCEEEEeeCCCcEEEEECCCC
Q 003467 170 DRRVALACDDGCVRIYRIT---DSDELIYH-----R--SLPR--VSGRVLSVT--WSADGNMLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~---~~~~~~~~-----~--~~~~--h~~~v~~v~--~s~dg~~l~s~~~dg~i~vwd~~~g 235 (817)
++|++|+.||.|++||+. ++...... + .+.. +...+.++. +++++.+|++|+.||.|++||++++
T Consensus 124 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 124 -DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp -SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred -CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 499999999999999995 34332111 1 1112 556677777 5688999999999999999999999
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEee-cCccCeeEEEEe----cCCCEE
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAA----PSHNRV 309 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s----~~~~~l 309 (817)
+.+..+... .|...|.+++|+|++ .|++++.||.|++||+++++++..+. .|...|.+++|+ +++.+|
T Consensus 203 ~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 203 ERLQIIENS------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp CEEEEEECC------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred eeeEEEccC------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 999998821 278899999999999 79999999999999999999999886 788899999655 567899
Q ss_pred EEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccc
Q 003467 310 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS 389 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
++++.||.|++||+.++. .+..+..|...+..+.+. |+++
T Consensus 277 ~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~---------~~~~-------------- 316 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGH-----------------CQYAFINSDEQPSMEHFL---------PIEK-------------- 316 (437)
T ss_dssp EEESTTEEEEEEETTTTE-----------------EEEEEESSSSCCCGGGGS---------CBCS--------------
T ss_pred EEEcCCCcEEEEEcCCCc-----------------EEEEEEcCCCCCccceec---------cccc--------------
Confidence 999999999999998876 566677776666655554 3322
Q ss_pred ccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcc
Q 003467 390 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE 469 (817)
Q Consensus 390 ~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~ 469 (817)
T Consensus 317 -------------------------------------------------------------------------------- 316 (437)
T 3gre_A 317 -------------------------------------------------------------------------------- 316 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC--CccccceeEEE
Q 003467 470 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL--PRKLQFAHSMI 547 (817)
Q Consensus 470 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~ 547 (817)
.+ .+ ..+ ..|...|++++
T Consensus 317 -----------------------------------~l---~~----------------------~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 317 -----------------------------------GL---EE----------------------LNFCGIRSLNALSTIS 336 (437)
T ss_dssp -----------------------------------SG---GG----------------------CCCCCCCSGGGGCCEE
T ss_pred -----------------------------------cc---cc----------------------ceecccccCCceEEEE
Confidence 00 00 001 12455799999
Q ss_pred EecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce
Q 003467 548 FSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ 627 (817)
Q Consensus 548 fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~ 627 (817)
|+ ++++|++++.|+.|++||+.+++.+..+.++.. ....+....++++..+++.. |+......
T Consensus 337 ~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 399 (437)
T 3gre_A 337 VS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR--------FSDVFIPTQVTANLTMLLRK--------MKRTSTHS 399 (437)
T ss_dssp EE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC----------CCCEEEEEEEETTEEEEEEE--------CC------
T ss_pred EC-CceEEEecCCCCeEEEEECCCcccceEEecccc--------cCceEEEEEeecceEEEEEe--------cccccccc
Confidence 99 889999999999999999999999998887432 34566777777777666655 22222222
Q ss_pred EEEEecCCCCCeEEEEecCCC--CCeEEEEecCCeEEEEE
Q 003467 628 HWFISRLEGASVTAAGFPPQN--NNVLIITTSSNQVYVFD 665 (817)
Q Consensus 628 ~~~~~~~~~~~i~~l~~sp~d--~~~l~~~~~d~~i~vwd 665 (817)
. .....|...|++++|++ + +.+|++++.||.|++|+
T Consensus 400 ~-~~~~~h~~~I~~i~~~~-~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 V-DDSLYHHDIINSISTCE-VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEE-SSSSEEEEEEETTSCEEEEC
T ss_pred c-CcccccccceeeEeeec-cCCceEEEEEcCCceEEEeC
Confidence 2 22244678999999999 6 77999999999999995
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-36 Score=320.96 Aligned_cols=315 Identities=14% Similarity=0.189 Sum_probs=254.3
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.+..|.++|++++|+|++++||+|+.||.|+|||+.+++ +.....+.+| ...|.+++|+|++++ |++++.|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h-~~~v~~~~~~~~~~~------l~~~~~d 73 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEH-NGQVTGVDWAPDSNR------IVTCGTD 73 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECC-SSCEEEEEEETTTTE------EEEEETT
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCC-CCcccEEEEeCCCCE------EEEEcCC
Confidence 355699999999999999999999999999999998874 2246677777 789999999999987 9999999
Q ss_pred CeEEEEECCCCeEEEEE--eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 88 GSVSEWDLYDLKQKIVL--QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
+.|++||+.+++....+ ..|...|.+++|+|++
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------- 108 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE--------------------------------------------- 108 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS---------------------------------------------
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC---------------------------------------------
Confidence 99999999998765444 6789999999999998
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEe-eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC-----------
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYH-RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK----------- 233 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~----------- 233 (817)
++|++++.||.|++||+..+...... ....+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 109 -----~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 109 -----KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp -----SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred -----CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 59999999999999999976643322 3346789999999999999999999999999999953
Q ss_pred -------CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecC
Q 003467 234 -------LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 234 -------~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
+++.+..+. .|...|.+++|+|++ .|++++.||.|++||+++++.+..+..|...|.+++|+|+
T Consensus 184 ~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 184 PWGSKMPFGELMFESS--------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 255 (372)
T ss_dssp TTBSCCCTTCEEEECC--------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred ccccccchhhheEecC--------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecC
Confidence 567776665 688899999999999 7999999999999999999999999999999999999999
Q ss_pred CCEEEEEccCCcEEEEEeec--ccCCCCCCCCCcc--------cc-------ceEEEe------ecc-ccCCCccceeEe
Q 003467 306 HNRVFSTGSDGQVILYKASC--ESIGPNDGLSSSE--------VI-------KKWIYV------GSV-RAHTHDVRALTV 361 (817)
Q Consensus 306 ~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~--------~~-------~~~~~~------~~~-~~h~~~v~~l~~ 361 (817)
+++++++ .|+.|++|++.. +............ .. .+.... ..+ .+|...|.++++
T Consensus 256 ~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 334 (372)
T 1k8k_C 256 SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 334 (372)
T ss_dssp TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEE
T ss_pred CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEE
Confidence 9888777 999999999988 3200000000000 00 000011 223 489999999986
Q ss_pred ecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 362 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
.+ +++. +..+|++|+.||.|++|++.+..
T Consensus 335 ~~--------~~g~---------------------~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 335 LS--------GGKA---------------------KCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EE--------STTT---------------------SCSEEEEEETTSEEEEEEHHHHH
T ss_pred ec--------CCCc---------------------ceeeEEEecCCCceEEEEecChh
Confidence 41 3330 11499999999999999997754
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=347.99 Aligned_cols=295 Identities=17% Similarity=0.241 Sum_probs=249.5
Q ss_pred eeeeccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCC-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 6 NSSIDWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSG-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
...+.+|.+.|++++|+|++ ++||+|+.||+|+|||+.+.... ..+...+.+| ...|.+++|+|++++ |++
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~g~~------l~s 447 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLSSDGQF------ALS 447 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEECTTSSE------EEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-CCcEEEEEECCCCCE------EEE
Confidence 45678999999999999875 79999999999999999865432 2345677887 789999999999988 999
Q ss_pred eeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 84 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
++.|++|++||+.++++...+.+|...|.+++|+|++
T Consensus 448 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~------------------------------------------- 484 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN------------------------------------------- 484 (694)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-------------------------------------------
T ss_pred EeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-------------------------------------------
Confidence 9999999999999999999999999999999999998
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC--CEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG--NMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg--~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
++|++|+.|+.|++||..............+|...|.+++|+|++ ..|++++.|++|++||+.+++....+
T Consensus 485 -------~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 557 (694)
T 3dm0_A 485 -------RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557 (694)
T ss_dssp -------SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -------CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence 489999999999999986443333334456899999999999987 58999999999999999999888877
Q ss_pred EeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
. +|...|.+++|+|++ .|++++.||.|++||+.+++.+..+.. ...|.+++|+|++.+|+++ .++.|++
T Consensus 558 ~--------~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~-~~~~i~i 627 (694)
T 3dm0_A 558 A--------GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA-TEHGIKI 627 (694)
T ss_dssp C--------CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEE-ETTEEEE
T ss_pred c--------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEE-cCCCEEE
Confidence 6 799999999999999 799999999999999999999888765 5679999999999877665 5667999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeecccc-------------------CCCccceeEeecccCCCCCCCccccccccC
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRA-------------------HTHDVRALTVAVPISREDPLPEDKVKRSRG 381 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (817)
||+.++. .+..+.. +...+.+++|+ |+++
T Consensus 628 wd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s---------pdg~------ 675 (694)
T 3dm0_A 628 WDLESKS-----------------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS---------ADGS------ 675 (694)
T ss_dssp EETTTTE-----------------EEEEECCCCC----------------CCCCEEEEEEC---------TTSS------
T ss_pred EECCCCC-----------------ChhhhccccccccccccccccccCCceeEEeeeEEEc---------CCCC------
Confidence 9998765 2222211 12235677777 7776
Q ss_pred CCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 382 REKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+|++|+.||.|++|++..
T Consensus 676 ------------------~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 676 ------------------TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ------------------EEEEEETTSEEEEEEC--
T ss_pred ------------------EEEEEcCCCeEEEEeccC
Confidence 999999999999999853
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-36 Score=315.76 Aligned_cols=268 Identities=18% Similarity=0.236 Sum_probs=209.9
Q ss_pred EEEecCCcEEE--EecCCCCCCcEEEEEEcCCCCCcEEEEEEeec-CCCCCCCceEEEeeCCCeEEEEECCCC-----eE
Q 003467 29 AAAREDGSLEI--WLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA-GKMGLPGGRLFSSSIDGSVSEWDLYDL-----KQ 100 (817)
Q Consensus 29 a~~~~dg~i~i--wd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~-----~~ 100 (817)
++|...|+..+ +...+.+ ..+..++.|| .+.|++|+|+|+ +++ |+|+|.|++|++||+.++ .+
T Consensus 8 ~~g~d~g~~~~~~~~~~~~~--~~l~~tL~GH-~~~V~~v~~sp~~~~~------l~S~s~D~~i~vWd~~~~~~~~~~~ 78 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMTEQ--MTLRGTLKGH-NGWVTQIATTPQFPDM------ILSASRDKTIIMWKLTRDETNYGIP 78 (340)
T ss_dssp ------------------CE--EEEEEEECCC-SSCEEEEEECTTCTTE------EEEEETTSCEEEEEECCSSSCSEEE
T ss_pred ccccCCCCccEEEEEccCCc--eEEEEEECCc-cCCEEEEEEeCCCCCE------EEEEcCCCeEEEEECCCCCccccee
Confidence 34444454333 3333322 3356688998 899999999998 456 999999999999998764 35
Q ss_pred EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 101 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 101 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
...+.+|...|.+++|+|++ ++|++++.|+
T Consensus 79 ~~~l~~h~~~V~~~~~s~dg--------------------------------------------------~~l~s~~~d~ 108 (340)
T 4aow_A 79 QRALRGHSHFVSDVVISSDG--------------------------------------------------QFALSGSWDG 108 (340)
T ss_dssp EEEECCCSSCEEEEEECTTS--------------------------------------------------SEEEEEETTS
T ss_pred eEEEeCCCCCEEEEEECCCC--------------------------------------------------CEEEEEcccc
Confidence 67889999999999999998 5999999999
Q ss_pred cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeE
Q 003467 181 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 260 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (817)
.|++|+....... .....+...+..+.+++++.+|++++.|+.+++||+.......... ..|...+..++
T Consensus 109 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~-------~~~~~~v~~~~ 178 (340)
T 4aow_A 109 TLRLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-------ESHSEWVSCVR 178 (340)
T ss_dssp EEEEEETTTTEEE---EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------SSCSSCEEEEE
T ss_pred cceEEeeccccee---eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-------ccccCcccceE
Confidence 9999999755444 5556677889999999999999999999999999987654433222 26888999999
Q ss_pred EecCC---eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCc
Q 003467 261 SLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 261 ~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+..
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~---------- 248 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---------- 248 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE----------
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc----------
Confidence 99876 57899999999999999999999999999999999999999999999999999999998766
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+.. ...|.+++++ |++ .+++++.|+.|++||+..
T Consensus 249 -------~~~~~~~-~~~v~~~~~~---------~~~-------------------------~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 249 -------HLYTLDG-GDIINALCFS---------PNR-------------------------YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp -------EEEEEEC-SSCEEEEEEC---------SSS-------------------------SEEEEEETTEEEEEETTT
T ss_pred -------eeeeecC-CceEEeeecC---------CCC-------------------------ceeeccCCCEEEEEECCC
Confidence 4444443 3467777775 544 466677788888888754
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.1e-36 Score=322.54 Aligned_cols=329 Identities=15% Similarity=0.221 Sum_probs=276.6
Q ss_pred EEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCc
Q 003467 52 QLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSD 131 (817)
Q Consensus 52 ~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~ 131 (817)
...+.+|....+.+ +++++++ |++++.||+|++||+.+++++..+.+|.+.|++++|++
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~------l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------- 169 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNR------IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD------------- 169 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTE------EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-------------
T ss_pred eEEecccCCCcEEE--EEEcCCE------EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC-------------
Confidence 45778885445665 4556776 99999999999999999999999999999999999983
Q ss_pred cccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEE
Q 003467 132 HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW 211 (817)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 211 (817)
+.+++|+.||.|++||+.+++.+ ..+.+|...|.+++|
T Consensus 170 ---------------------------------------~~l~s~~~dg~i~vwd~~~~~~~---~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 170 ---------------------------------------NIIISGSTDRTLKVWNAETGECI---HTLYGHTSTVRCMHL 207 (445)
T ss_dssp ---------------------------------------TEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEE
T ss_pred ---------------------------------------CEEEEEeCCCeEEEEECCcCcEE---EEECCCCCcEEEEEe
Confidence 38999999999999999877555 778899999999999
Q ss_pred ccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 212 SADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 212 s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
+ ++.|++|+.||.|++||+.+++.+..+. +|...|.++.+ ....+++++.||.|++||+++++.+..+.
T Consensus 208 ~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~--------~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 208 H--EKRVVSGSRDATLRVWDIETGQCLHVLM--------GHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp E--TTEEEEEETTSEEEEEESSSCCEEEEEE--------CCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred c--CCEEEEEeCCCEEEEEECCCCcEEEEEc--------CCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 6 5789999999999999999999998887 68899999999 33489999999999999999999999999
Q ss_pred cCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCC
Q 003467 292 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 371 (817)
Q Consensus 292 ~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 371 (817)
+|...|.+++| +++++++++.|+.|++||+.+++ .+..+..|...+.++.+.
T Consensus 277 ~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-----------------~~~~~~~~~~~v~~~~~~--------- 328 (445)
T 2ovr_B 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-----------------CIHTLTGHQSLTSGMELK--------- 328 (445)
T ss_dssp CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-----------------EEEEECCCCSCEEEEEEE---------
T ss_pred CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-----------------EEEEEcCCcccEEEEEEe---------
Confidence 99999999999 78999999999999999998877 677888898888888763
Q ss_pred CccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEE
Q 003467 372 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 451 (817)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 451 (817)
+ .++++|+.||.|++||+.+....
T Consensus 329 --~------------------------~~l~~~~~dg~i~vwd~~~~~~~------------------------------ 352 (445)
T 2ovr_B 329 --D------------------------NILVSGNADSTVKIWDIKTGQCL------------------------------ 352 (445)
T ss_dssp --T------------------------TEEEEEETTSCEEEEETTTCCEE------------------------------
T ss_pred --C------------------------CEEEEEeCCCeEEEEECCCCcEE------------------------------
Confidence 2 38999999999999998642200
Q ss_pred EeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEE
Q 003467 452 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWII 531 (817)
Q Consensus 452 ~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~ 531 (817)
.. +
T Consensus 353 --------------------------------~~---------------------------------~------------ 355 (445)
T 2ovr_B 353 --------------------------------QT---------------------------------L------------ 355 (445)
T ss_dssp --------------------------------EE---------------------------------E------------
T ss_pred --------------------------------EE---------------------------------E------------
Confidence 00 0
Q ss_pred eeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 532 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 532 ~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
.....|...|.+++|+ +++|++++.||.|++||+.+++.+..+.... ...|.+.|++++|+|++.+||++
T Consensus 356 --~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 356 --QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE------SGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp --CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT------TGGGTCEEEEEEECSSEEEEEEE
T ss_pred --ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc------cCCCCceEEEEEecCCEEEEEEc
Confidence 0011234468888884 6899999999999999999999988883110 01178899999999999999999
Q ss_pred eCCCc----EEEEECCCc
Q 003467 612 NCFGD----VYIFNLEIQ 625 (817)
Q Consensus 612 ~~dg~----i~vwd~~~~ 625 (817)
+.||+ |.|||++..
T Consensus 426 ~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSSSSCCEEEEEECCCC
T ss_pred ccCCCCccEEEEEECCCC
Confidence 99998 999998753
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-35 Score=321.26 Aligned_cols=329 Identities=17% Similarity=0.237 Sum_probs=267.3
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccC
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
....+.+|....+.++.| ++++ |++++.||+|++||+.+++.+..+.+|.+.|++++|++++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~------l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---------- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNY------VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---------- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTE------EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT----------
T ss_pred ceEEEcCCCCCcEEEEEE--CCCE------EEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC----------
Confidence 467888885555677666 4556 9999999999999999999999999999999999999987
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEE
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT 210 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 210 (817)
.+++|+.||.|++||+.++..+ ..+.+|.+.|.+++
T Consensus 175 -----------------------------------------~l~s~s~dg~i~vwd~~~~~~~---~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 175 -----------------------------------------ILVSGSTDRTVRVWDIKKGCCT---HVFEGHNSTVRCLD 210 (464)
T ss_dssp -----------------------------------------EEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEE
T ss_pred -----------------------------------------EEEEEeCCCCEEEEECCCCcEE---EEECCCCCccEEEE
Confidence 8999999999999999877655 77889999999999
Q ss_pred Ec--cCCCEEEEeeCCCcEEEEECCCCceEEEEEeec---------------CCCCCCCceeEEEeEEecCC-eEEEEcC
Q 003467 211 WS--ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL---------------GGLGSGPELCIWSLLSLRCG-TLVSADS 272 (817)
Q Consensus 211 ~s--~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~---------------~~~~~~~~~~v~~v~~~~~~-~l~s~~~ 272 (817)
|+ +++.+|++|+.||.|++||+.++.......... .....+|...+.++ ++++ .+++++.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 98 578999999999999999998876543211000 00012577777776 4555 8999999
Q ss_pred CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 352 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (817)
||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.+++ .+..+.+|
T Consensus 289 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----------------~~~~~~~h 351 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----------------LMYTLQGH 351 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----------------EEEEECCC
T ss_pred CCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------EEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999998877 77888999
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
...|.+++++ + .+|++++.||.|++||+.+...
T Consensus 352 ~~~v~~~~~~-----------~------------------------~~l~s~s~dg~v~vwd~~~~~~------------ 384 (464)
T 3v7d_B 352 TALVGLLRLS-----------D------------------------KFLVSAAADGSIRGWDANDYSR------------ 384 (464)
T ss_dssp SSCEEEEEEC-----------S------------------------SEEEEEETTSEEEEEETTTCCE------------
T ss_pred CCcEEEEEEc-----------C------------------------CEEEEEeCCCcEEEEECCCCce------------
Confidence 9999999984 1 3899999999999999864210
Q ss_pred CceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 512 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 512 (817)
T Consensus 385 -------------------------------------------------------------------------------- 384 (464)
T 3v7d_B 385 -------------------------------------------------------------------------------- 384 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeee-eccCcccccccCCC
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT-FTPCREEHDREIQP 591 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~ 591 (817)
.+. . .+...+..++|+|++++|++++ ||.|++||+.+++.++. +..
T Consensus 385 ---~~~------------~------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~----------- 431 (464)
T 3v7d_B 385 ---KFS------------Y------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK----------- 431 (464)
T ss_dssp ---EEE------------E------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT-----------
T ss_pred ---eee------------e------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc-----------
Confidence 000 0 0111456778999999999998 89999999999999886 344
Q ss_pred CCCceeEEEEccCCCEEEEEeCCCcEEEEE
Q 003467 592 SEPPITKMFTSSDGQWLAAVNCFGDVYIFN 621 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~~dg~i~vwd 621 (817)
|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 432 ~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 432 DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 78999999996 344555556677655543
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.4e-37 Score=323.79 Aligned_cols=311 Identities=12% Similarity=0.131 Sum_probs=250.0
Q ss_pred eeeccCCCceEEEEECCC----CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE
Q 003467 7 SSIDWKPSPVVALATSAD----DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF 82 (817)
Q Consensus 7 r~~~~h~~~I~~la~spd----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~ 82 (817)
++..+|.++|++++|+|+ ...+++++.++.|+|||+.+++............+...|.+++|+|++.. ...+|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT--SHPLLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT--CCEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC--CCCEEE
Confidence 566799999999999994 44566666678999999997764222222222224688999999999430 002399
Q ss_pred EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 83 SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 83 s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+++.||.|++||+.+++.+..+.+|...|.+++|+| ++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------------- 128 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP----------------------------------------- 128 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-----------------------------------------
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-----------------------------------------
Confidence 999999999999999999999999999999999999 66
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
.+|++++.||.|++||+.+++.+.....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 129 ---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 129 ---------NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp ---------TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred ---------CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 48999999999999999877666444444789999999999999999999999999999999887654322
Q ss_pred Eee--------------------cCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCe--------------EE
Q 003467 242 TVG--------------------LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT--------------LL 287 (817)
Q Consensus 242 ~~~--------------------~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~--------------~~ 287 (817)
... .......|...|.+++|+ ...+++++.||.|++||+.++. .+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 210 000011388899999999 5589999999999999998764 47
Q ss_pred EEeecCccCeeEEEEecC--CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC--CCccceeEeec
Q 003467 288 QAHSFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH--THDVRALTVAV 363 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~ 363 (817)
..+..|...|.+++|+|+ +++|++++.||.|++|++.++.... .....+..| ...|.+++|+
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~s- 344 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-------------AKCTTLTHHKCGAAIRQTSFS- 344 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-------------CEEEEECCTTCCSCEEEEEEC-
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-------------ccceEEcccccCCceEEEEeC-
Confidence 888999999999999999 9999999999999999998865211 023455666 7899999998
Q ss_pred ccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 364 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
|+++ +|++++.||.|++||+.
T Consensus 345 --------~~~~------------------------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 345 --------RDSS------------------------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp --------TTSS------------------------EEEEEETTSEEEEEEC-
T ss_pred --------CCCC------------------------eEEEEeCCCEEEEEEec
Confidence 7776 99999999999999985
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-35 Score=320.11 Aligned_cols=289 Identities=20% Similarity=0.283 Sum_probs=247.8
Q ss_pred eeeeeccCCCce-EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 5 RNSSIDWKPSPV-VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 5 r~r~~~~h~~~I-~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
..+.+.+|...| +|+++ ++++||+|+.||.|++||+.+++ +...+.+| .+.|.+++|+|++ . |++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~----~~~~~~~h-~~~V~~l~~~~~~-~------l~s 178 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK----FLLQLSGH-DGGVWALKYAHGG-I------LVS 178 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE----EEEEECCC-SSCEEEEEECSTT-E------EEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc----EEEEEeCC-CcCEEEEEEcCCC-E------EEE
Confidence 345678898885 66666 57899999999999999999887 57788887 8999999999987 5 999
Q ss_pred eeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 84 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
++.||+|++||+.+++++..+.+|...|.+++|++....
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~----------------------------------------- 217 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI----------------------------------------- 217 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-----------------------------------------
T ss_pred EeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-----------------------------------------
Confidence 999999999999999999999999999999999964321
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCcee--------------------EeeccCCccceEEEEEEccCCCEEEEeeC
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELI--------------------YHRSLPRVSGRVLSVTWSADGNMLYSGSS 223 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 223 (817)
.++++|+.||.|++||+.++.... ....+.+|...|.++ ++++++|++|+.
T Consensus 218 -------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 218 -------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp -------EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred -------CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 489999999999999998654321 135677899999887 577899999999
Q ss_pred CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEE
Q 003467 224 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA 302 (817)
Q Consensus 224 dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 302 (817)
||.|++||+.+++.+..+. +|...|.+++|+|++ .+++++.||.|++||+++++++..+.+|...|.+++|
T Consensus 289 d~~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILS--------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC--------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEec--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 9999999999999988886 688999999999998 7999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCC
Q 003467 303 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
+ +++|++++.||.|++||+.+.. .... ..|...+..++++ ++++
T Consensus 361 ~--~~~l~s~s~dg~v~vwd~~~~~-----------------~~~~-~~~~~~~~~~~~~---------~~~~------- 404 (464)
T 3v7d_B 361 S--DKFLVSAAADGSIRGWDANDYS-----------------RKFS-YHHTNLSAITTFY---------VSDN------- 404 (464)
T ss_dssp C--SSEEEEEETTSEEEEEETTTCC-----------------EEEE-EECTTCCCEEEEE---------ECSS-------
T ss_pred c--CCEEEEEeCCCcEEEEECCCCc-----------------eeee-ecCCCCccEEEEE---------eCCC-------
Confidence 7 5799999999999999998765 2222 2356667777887 6664
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
++++|+ |+.|++||+.+.+
T Consensus 405 -----------------~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 405 -----------------ILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp -----------------EEEEEE-TTEEEEEETTTCC
T ss_pred -----------------EEEEec-CCeEEEEECCCCc
Confidence 888888 9999999998754
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=336.15 Aligned_cols=255 Identities=8% Similarity=0.088 Sum_probs=199.5
Q ss_pred CCcEEEEEEeecCCCC---CCCceEEE-------------------eeCCCeEEEEECCCCeEE----EEEeecCceEEE
Q 003467 60 KSRISSLVWCHAGKMG---LPGGRLFS-------------------SSIDGSVSEWDLYDLKQK----IVLQSIDFSIWQ 113 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~---~~~~~l~s-------------------~~~d~~i~vwd~~~~~~~----~~~~~~~~~i~~ 113 (817)
.+.|.+|+|+|++.-. ....+||+ ++.|++|++||+.+++.. ..+..|.+.|++
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 5688899999886100 00012444 567899999999887643 456778899999
Q ss_pred EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce
Q 003467 114 MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 193 (817)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 193 (817)
++|+|++.. .+++.+||+++.||+|+|||+.++...
T Consensus 213 v~wsp~~~~--------------------------------------------~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 213 LKWHEGCHA--------------------------------------------PHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp EEECSSCCC--------------------------------------------SSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred EEECCCCCC--------------------------------------------CCCCceEEEEecCCeEEEEEcCCCccc
Confidence 999997310 001149999999999999999755321
Q ss_pred --------eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce-EEEEEeecCCCCCCCceeEEEe--EEe
Q 003467 194 --------IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-IYRITVGLGGLGSGPELCIWSL--LSL 262 (817)
Q Consensus 194 --------~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~-~~~~~~~~~~~~~~~~~~v~~v--~~~ 262 (817)
.....+.+|.+.|++++|+++ ..|++|+.||+|++||++++.. ...+. .|...|.++ +|+
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~--------~H~~~V~sv~~~~s 319 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ--------VHDSYILSVSTAYS 319 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEE--------CSSSCEEEEEEECC
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEee--------cccccEEEEEEEcC
Confidence 011367789999999999986 4899999999999999997743 34455 689999999 578
Q ss_pred cCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCcc--CeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCcc
Q 003467 263 RCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKG--DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 263 ~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
+++ .|++++.|++|++||+++++++..+.+|.. .|.+++|+|+++.+++++.|++|++||+..+.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----------- 388 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----------- 388 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----------
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----------
Confidence 876 689999999999999999888777777654 58899999999999999999999999998876
Q ss_pred ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 339 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
++..+.+|...|.+++|+ |+++ .|++|+.|++|++|++..
T Consensus 389 ------~~~~l~gH~~~V~sva~S---------p~g~------------------------~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 389 ------AVHPLVSRETTITAIGVS---------RLHP------------------------MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ------CCEEEEECSSCEEEEECC---------SSCC------------------------BCEEEETTTEEECCBSCS
T ss_pred ------cceeeecCCCceEEEEeC---------CCCC------------------------eEEEEECCCEEEEEechH
Confidence 455677899999999998 8876 899999999999999753
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-36 Score=303.61 Aligned_cols=253 Identities=17% Similarity=0.195 Sum_probs=213.4
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec--CCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA--GKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~--~~~~~~~~~l~s~ 84 (817)
..+.+|...|++++|+|+|++||+|+.|++|+|||+.+... .+..++.+| .+.|.+++|+|+ +++ |+++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH-~~~V~~v~~s~~~~g~~------l~s~ 73 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGH-EGPVWRVDWAHPKFGTI------LASC 73 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCC-SSCEEEEEECCGGGCSE------EEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccc-cCCeEEEEecCCCcCCE------EEEE
Confidence 45789999999999999999999999999999999975421 145778888 789999999874 666 9999
Q ss_pred eCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 85 SIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+.|++|++||+.+++ .+..+..|...|.+++|+|+...
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g---------------------------------------- 113 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG---------------------------------------- 113 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC----------------------------------------
T ss_pred cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC----------------------------------------
Confidence 999999999999874 56778889999999999997210
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-------------CCEEEEeeCCCcEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-------------GNMLYSGSSDGYIRS 229 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-------------g~~l~s~~~dg~i~v 229 (817)
.+|++++.||.|++||+.++.... ...+.+|...|.+++|+|+ +++|++|+.|++|++
T Consensus 114 --------~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 114 --------PMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp --------SEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEE
T ss_pred --------cEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEE
Confidence 489999999999999998553221 1456789999999999997 579999999999999
Q ss_pred EECCCCc----eEEEEEeecCCCCCCCceeEEEeEEecCC----eEEEEcCCCcEEEEeCCCCe---EEEEe--ecCccC
Q 003467 230 WDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGT---LLQAH--SFHKGD 296 (817)
Q Consensus 230 wd~~~g~----~~~~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~s~~~dg~i~iwd~~~~~---~~~~~--~~h~~~ 296 (817)
||+.+++ ....+. +|...|.+++|+|++ .|++++.|++|++||++++. ....+ ..|...
T Consensus 185 wd~~~~~~~~~~~~~l~--------~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~ 256 (297)
T 2pm7_B 185 WKYNSDAQTYVLESTLE--------GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256 (297)
T ss_dssp EEEETTTTEEEEEEEEC--------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC
T ss_pred EEEcCCCceEEEEEEec--------CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc
Confidence 9998876 333443 699999999999983 69999999999999998642 12233 467889
Q ss_pred eeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 297 VNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
|.+++|+|++++|++++.|+.|++|+...
T Consensus 257 v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 257 LWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999999999999999999764
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.8e-36 Score=315.63 Aligned_cols=284 Identities=15% Similarity=0.194 Sum_probs=238.7
Q ss_pred eeeeccCCCceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCCcEEEEEEc--CCCCCcEEEEEEee-cCCCCCCCceE
Q 003467 6 NSSIDWKPSPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSGWHCQLTVH--GDPKSRISSLVWCH-AGKMGLPGGRL 81 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--g~~~~~V~~l~~s~-~~~~~~~~~~l 81 (817)
.+.+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++. ...+. +| ...|.+++|+| ++.+ |
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~h-~~~v~~~~~~~~~~~~------l 134 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK----TSFIQGMGP-GDAITGMKFNQFNTNQ------L 134 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC----EEEECCCST-TCBEEEEEEETTEEEE------E
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc----ceeeecCCc-CCceeEEEeCCCCCCE------E
Confidence 45678999999999999999 9999999999999999998773 33443 45 89999999999 6666 9
Q ss_pred EEeeCCCeEEEEECCCCeEEEEEeec---CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 82 FSSSIDGSVSEWDLYDLKQKIVLQSI---DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
++++.|++|++||+.+ .....+..+ ...|.+++|+|++
T Consensus 135 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------------------- 175 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-------------------------------------- 175 (383)
T ss_dssp EEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT--------------------------------------
T ss_pred EEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC--------------------------------------
Confidence 9999999999999996 555555544 4889999999998
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCC---
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKL--- 234 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~--- 234 (817)
++|++|+.||.|++||+. +..+ ..+.+|.+.|.+++|+|+++ +|++++.|+.|++||+.+
T Consensus 176 ------------~~l~~~~~d~~i~i~d~~-~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 176 ------------QMLATGDSTGRLLLLGLD-GHEI---FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp ------------TEEEEEETTSEEEEEETT-SCEE---EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred ------------CEEEEECCCCCEEEEECC-CCEE---EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 599999999999999994 4444 67788999999999999999 999999999999999998
Q ss_pred -CceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-----------------
Q 003467 235 -GYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK----------------- 294 (817)
Q Consensus 235 -g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----------------- 294 (817)
+..+..+. |...|.+++|+| ++ .|++++.|+.|++||+++++.+..+..|.
T Consensus 240 ~~~~~~~~~---------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 240 KNSYIAEMP---------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp TTCEEEEEE---------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred ccceEEEec---------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 55555553 788999999999 88 79999999999999999988777766543
Q ss_pred cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc--CCCccceeEeecccCCCCCCC
Q 003467 295 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISREDPLP 372 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~ 372 (817)
..+..++|+|++++ +++.|+.|++||+.+++ .+..+.. |...+..++|+ |
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~-----------------~~~~l~~~~~~~~~~~~~~s---------~ 362 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG-----------------LVHQLRDPNAAGIISLNKFS---------P 362 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTCC-----------------EEEEECBTTBCSCCCEEEEC---------T
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCCc-----------------eeeeecCCCCCceEEEEEEe---------c
Confidence 34455777777776 77899999999998877 5666766 45667777997 7
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+++ +|++|+ |+.|++|++.+
T Consensus 363 ~g~------------------------~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TGD------------------------VLASGM-GFNILIWNRED 382 (383)
T ss_dssp TSS------------------------EEEEEE-TTEEEEEECC-
T ss_pred Ccc------------------------EEEEec-CCcEEEEecCC
Confidence 776 999997 99999999864
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=317.16 Aligned_cols=307 Identities=14% Similarity=0.178 Sum_probs=246.6
Q ss_pred eeeccCCCceEEEEECCCCCeE-EEEec---CCcEEEEecCCCCCCcEEEEE-EcCCCCCcEEEEEEeec---CCCCCCC
Q 003467 7 SSIDWKPSPVVALATSADDSQV-AAARE---DGSLEIWLVSPGTSGWHCQLT-VHGDPKSRISSLVWCHA---GKMGLPG 78 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~l-a~~~~---dg~i~iwd~~~~~~~~~~~~~-~~g~~~~~V~~l~~s~~---~~~~~~~ 78 (817)
+.+.+|...|++++|+|++..| |+|+. ||.|+|||+.+++. ... ..+| ...|.+++|+|+ +.+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~~~---- 82 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----KLLREIEK-AKPIKCGTFGATSLQQRY---- 82 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----EEEEEEEE-SSCEEEEECTTCCTTTCC----
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----cceeeecc-cCcEEEEEEcCCCCCCce----
Confidence 3457899999999999999655 55655 89999999998772 322 2244 789999999999 577
Q ss_pred ceEEEeeCCCeEEEEECCCCe-EEEEEeecCceEEEEee------ecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 79 GRLFSSSIDGSVSEWDLYDLK-QKIVLQSIDFSIWQMAV------APSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~i~~~~~------s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
|++++.|+.|++||+.+++ ++..+.+|...|.+++| +|++
T Consensus 83 --l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~------------------------------- 129 (357)
T 3i2n_A 83 --LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA------------------------------- 129 (357)
T ss_dssp --EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-------------------------------
T ss_pred --EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-------------------------------
Confidence 9999999999999999988 88999999999999965 4555
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCC-ceeEeeccCCcc----ceEEEEE----EccCCCEEEEee
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRSLPRVS----GRVLSVT----WSADGNMLYSGS 222 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~----~~v~~v~----~s~dg~~l~s~~ 222 (817)
++|++++.||.|++||+.++. .. ..+..|. ..|.+++ |+|++++|++++
T Consensus 130 -------------------~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 130 -------------------PEIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp -------------------CEEEEEETTSCEEEECTTSCSSCS---EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred -------------------cEEEEEeCCCeEEEEeCCCCCCcc---eeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 599999999999999998765 34 3444333 3899998 789999999999
Q ss_pred CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec---CC-eEEEEcCCCcEEEEeCCCCeEEEEee-----cC
Q 003467 223 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR---CG-TLVSADSTGSVQFWDSRHGTLLQAHS-----FH 293 (817)
Q Consensus 223 ~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----~h 293 (817)
.||.|++||+++++..... .+...|.+++|+| ++ .+++++.||.|++||+++++.+..+. .|
T Consensus 188 ~d~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 258 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWET---------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258 (357)
T ss_dssp TTSEEEEEETTTTEEEEEE---------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred cCCeEEEEECccCceeeec---------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence 9999999999998875554 3778999999998 66 79999999999999998876655444 89
Q ss_pred ccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCC--CCccccceEEEeeccccCCCccceeEeecccCCCCC
Q 003467 294 KGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGL--SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP 370 (817)
Q Consensus 294 ~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 370 (817)
...|.+++|+|+++ ++++++.||.|++|++........... ........+..+..+..|...|.+++|+
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------- 330 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-------- 330 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC--------
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc--------
Confidence 99999999999998 899999999999999987653210000 0011123456788889999999999998
Q ss_pred CCccccccccCCCCCccccccccccCCCcEEE-EecCCCeEEEEeCCccc
Q 003467 371 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDTKLFAYCANEFT 419 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~~~~~~~~~ 419 (817)
|+++ +|+ +++.|+.|++|++.+..
T Consensus 331 -~~~~------------------------~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 -PDKR------------------------GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -SSST------------------------TEEEEEETTSEEEEEEECC--
T ss_pred -CCCC------------------------eEEEEecCCCcEEEEECCCcc
Confidence 7775 666 89999999999997643
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=304.47 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=251.9
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
..+.+.+|.+.|++++| |++++||+|+.||.|+|||+.+++ ....+.+| ...|.+++|+|++++ |+++
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~------l~~~ 77 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW----LGTVVYTG-QGFLNSVCYDSEKEL------LLFG 77 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE----EEEEEEEC-SSCEEEEEEETTTTE------EEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE----EEEEeecC-CccEEEEEECCCCCE------EEEe
Confidence 45667999999999999 999999999999999999998765 46666666 789999999999988 9999
Q ss_pred eCCCeEEEEECCCC---eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 85 SIDGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 85 ~~d~~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+.|+.|++|++... +.+..+..|...|.+++|+ +
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----------------------------------------- 114 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D----------------------------------------- 114 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-----------------------------------------
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-----------------------------------------
Confidence 99999999998654 6678888999999999993 3
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
+.+++++.||.|++|| .+... ..+..|...|.+++|+| ++++|++++.||.|++|| .++....
T Consensus 115 ---------~~l~~~~~d~~i~~~d--~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~ 178 (313)
T 3odt_A 115 ---------GVVISGSWDKTAKVWK--EGSLV---YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKT 178 (313)
T ss_dssp ---------TEEEEEETTSEEEEEE--TTEEE---EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEE
T ss_pred ---------CEEEEEeCCCCEEEEc--CCcEE---EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEE
Confidence 3899999999999999 23333 67778999999999998 999999999999999999 4555555
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
+.. .+...+.+++|+|++.+++++.+|.|++||+++++.+..+..|...|.+++|+|++ .|++++.||.|++
T Consensus 179 ~~~-------~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i 250 (313)
T 3odt_A 179 FSG-------IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI 250 (313)
T ss_dssp ECS-------SCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE
T ss_pred Eec-------cCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE
Confidence 552 38889999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
||+.+++ .+..+..|...|.+++++ |++ .
T Consensus 251 wd~~~~~-----------------~~~~~~~~~~~i~~~~~~---------~~~-------------------------~ 279 (313)
T 3odt_A 251 WSKENGS-----------------LKQVITLPAISIWSVDCM---------SNG-------------------------D 279 (313)
T ss_dssp ECTTTCC-----------------EEEEEECSSSCEEEEEEC---------TTS-------------------------C
T ss_pred EECCCCc-----------------eeEEEeccCceEEEEEEc---------cCC-------------------------C
Confidence 9998887 677888999999999997 766 3
Q ss_pred EEEecCCCeEEEEeCCccccc
Q 003467 401 LISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~~~~~ 421 (817)
+++++.|+.|++|++.+....
T Consensus 280 ~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEETTSCEEEEESCGGGCC
T ss_pred EEEEeCCCcEEEEeCCCCcee
Confidence 667999999999999876533
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=327.80 Aligned_cols=252 Identities=13% Similarity=0.172 Sum_probs=205.4
Q ss_pred eeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 8 SIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.+..+.++|++++|+|+|++||+|+.||.|+|||+.++. +.+...+.+| ...|.+++|+|++++ |++++.|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h-~~~v~~~~~s~~~~~------l~s~s~d 76 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDH-DKIVTCVDWAPKSNR------IVTCSQD 76 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCC-SSCEEEEEECTTTCC------EEEEETT
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecC-CceEEEEEEeCCCCE------EEEEeCC
Confidence 345678899999999999999999999999999999762 1256677777 789999999999988 9999999
Q ss_pred CeEEEEECCCCe---EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 88 GSVSEWDLYDLK---QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 88 ~~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
++|++||+.+++ +...+..|...|.+++|+|++
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------------------------- 112 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-------------------------------------------- 112 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTS--------------------------------------------
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC--------------------------------------------
Confidence 999999999987 677888899999999999998
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCC-ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce------
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE------ 237 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~------ 237 (817)
++|++++.|+.|++||+.++........+.+ |...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus 113 ------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 113 ------DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp ------SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred ------CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence 4899999999999999987664323366676 999999999999999999999999999999864321
Q ss_pred --------EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeE----EEEeecCccCeeEEEEec
Q 003467 238 --------IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL----LQAHSFHKGDVNALAAAP 304 (817)
Q Consensus 238 --------~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~s~ 304 (817)
....... . .|...|.+++|+|++ .|++++.||.|++||+.+++. +..+..|...|.+++|+|
T Consensus 187 ~~~~~~~~~~~~~~~----~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAE----Y-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261 (377)
T ss_dssp CSSCSCCCEEEEEEC----C-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE
T ss_pred cccccccchhhhhhc----c-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC
Confidence 1111111 1 588899999999999 699999999999999999887 888999999999999999
Q ss_pred CCCEEEEEccCCcEEEEEee
Q 003467 305 SHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~ 324 (817)
++++|++++.++.+ +|+..
T Consensus 262 ~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 262 ESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTEEEEEESSSSEE-EECCC
T ss_pred CCCEEEEEcCCcEE-EEEeC
Confidence 99999888766655 77665
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-35 Score=311.58 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=185.2
Q ss_pred EEEEEEcCCCCCcEEEEEEeecC-CCCCCCceEEEeeCCCeEEEEECCCCeEEEEEe--ecCceEEEEeeec-CCCccce
Q 003467 50 HCQLTVHGDPKSRISSLVWCHAG-KMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQ--SIDFSIWQMAVAP-SNSSLMH 125 (817)
Q Consensus 50 ~~~~~~~g~~~~~V~~l~~s~~~-~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~~~~ 125 (817)
.....+.+| ...|.+++|+|++ ++ |++++.|++|++||+.+++....+. +|...|.+++|+| ++
T Consensus 64 ~~~~~~~~h-~~~v~~~~~~~~~~~~------l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----- 131 (383)
T 3ei3_B 64 KLHRTASPF-DRRVTSLEWHPTHPTT------VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT----- 131 (383)
T ss_dssp EEEEEECCC-SSCEEEEEECSSCTTE------EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-----
T ss_pred ceEEeccCC-CCCEEEEEECCCCCCE------EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-----
Confidence 356677777 7999999999998 76 9999999999999999988887776 6999999999999 44
Q ss_pred eeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce
Q 003467 126 AVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR 205 (817)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 205 (817)
.+|++++.|+.|++||+.+ ..+........|...
T Consensus 132 ---------------------------------------------~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 165 (383)
T 3ei3_B 132 ---------------------------------------------NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYW 165 (383)
T ss_dssp ---------------------------------------------EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCC
T ss_pred ---------------------------------------------CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCC
Confidence 4899999999999999984 455434444566689
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~ 283 (817)
|.+++|+|++++|++|+.|+.|++||+ +++.+..+. .|...|.+++|+|++ .+++++.|+.|++||+++
T Consensus 166 v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 166 YCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK--------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE--------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred eEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec--------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999999999999999999999999 577888887 689999999999998 589999999999999998
Q ss_pred ----CeEEEEeecCccCeeEEEEec-CCCEEEEEccCCcEEEEEeeccc
Q 003467 284 ----GTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 284 ----~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+..+..+ .|...|.+++|+| ++++|++++.|+.|++||+.+..
T Consensus 237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 6677766 6999999999999 99999999999999999998765
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-36 Score=308.24 Aligned_cols=254 Identities=18% Similarity=0.217 Sum_probs=210.5
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec--CCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA--GKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~--~~~~~~~~~l~s~ 84 (817)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .+...+.+| ...|.+++|+|+ +++ |+++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--~~~~~l~gH-~~~V~~v~~~~~~~~~~------l~s~ 77 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--ILIADLRGH-EGPVWQVAWAHPMYGNI------LASC 77 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--EEEEEEECC-SSCEEEEEECCGGGSSC------EEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--EEEEEEcCC-CccEEEEEeCCCCCCCE------EEEE
Confidence 34679999999999999999999999999999999987641 245677887 789999999864 776 9999
Q ss_pred eCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 85 SIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+.|++|++||+.+++ ....+.+|...|.+++|+|+...
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g---------------------------------------- 117 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG---------------------------------------- 117 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC----------------------------------------
T ss_pred ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC----------------------------------------
Confidence 999999999999874 66778899999999999998421
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC-----------------CCEEEEeeCCC
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-----------------GNMLYSGSSDG 225 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----------------g~~l~s~~~dg 225 (817)
.+|++|+.|+.|++||+..+........+.+|...|.+++|+|+ +++|++|+.|+
T Consensus 118 --------~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~ 189 (316)
T 3bg1_A 118 --------LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN 189 (316)
T ss_dssp --------SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred --------cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence 48999999999999999865444444677899999999999998 47899999999
Q ss_pred cEEEEECCCCc---eEEEEEeecCCCCCCCceeEEEeEEecCC-----eEEEEcCCCcEEEEeCCCC---e-EEEEeecC
Q 003467 226 YIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG---T-LLQAHSFH 293 (817)
Q Consensus 226 ~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~s~~~dg~i~iwd~~~~---~-~~~~~~~h 293 (817)
+|++||+..+. .+..+. +|...|.+++|+|++ .|++++.||+|++||+.+. + ....+..|
T Consensus 190 ~v~lWd~~~~~~~~~~~~l~--------~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 190 LIKLWKEEEDGQWKEEQKLE--------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp BCCEEEECTTSCEEEEECCB--------CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred eEEEEEeCCCCccceeeecc--------cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 99999997553 333333 688999999999984 6999999999999999762 1 23345678
Q ss_pred ccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 294 KGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 294 ~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
...|.+++|+|++++|++++.|+.|++|+...
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 89999999999999999999999999999763
No 70
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.8e-33 Score=335.88 Aligned_cols=514 Identities=9% Similarity=0.042 Sum_probs=364.7
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID--- 87 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--- 87 (817)
.+...+.+.+||| ++||.++. +.|.+|++.+++ ...+.+| ...|.+++|||||++ ||+++.+
T Consensus 12 ~~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~-----~~~lt~~-~~~v~~~~~SPDG~~------la~~s~~~~~ 76 (1045)
T 1k32_A 12 CMPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGS-----TRKIVSN-LGVINNARFFPDGRK------IAIRVMRGSS 76 (1045)
T ss_dssp -CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCC-----EEEEECS-SSEEEEEEECTTSSE------EEEEEEESTT
T ss_pred cccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCc-----EEEeeeC-CCcccCeEECCCCCE------EEEEEeeccC
Confidence 4567899999995 58888876 789999998876 4456666 789999999999988 8877543
Q ss_pred ---CeEEEEECCCCeEEEEEeecCceE-------EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 88 ---GSVSEWDLYDLKQKIVLQSIDFSI-------WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 88 ---~~i~vwd~~~~~~~~~~~~~~~~i-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
..|.+||+.+++ ...+..|...+ ..++|+|||
T Consensus 77 ~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg------------------------------------- 118 (1045)
T 1k32_A 77 LNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDG------------------------------------- 118 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTC-------------------------------------
T ss_pred CCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCC-------------------------------------
Confidence 479999999887 56788888888 999999999
Q ss_pred CCccccccccccCCEEEEEeCC------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--------
Q 003467 158 DSDELHEQSVVEDRRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-------- 223 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-------- 223 (817)
+.+++++.+ ..|++|++.++.. ..+..+. ...++|+| | ++++++.
T Consensus 119 -------------~ll~~~~~~~~~~~~~~l~~~~~~~g~~----~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 119 -------------NLIISTDAMQPFSSMTCLYRVENDGINF----VPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWK 177 (1045)
T ss_dssp -------------CEEEEECTTSSSTTCCEEEEEEGGGTEE----EECCSCS--CSEEEEET-T-EEEEEESCSCCTTST
T ss_pred -------------EEEEEECCcCCCcccceEEEEECCCCCe----EEecCCC--cceeeeCC-C-EEEEeccCCCccccc
Confidence 355666543 3577788765432 2333332 23577999 8 8888753
Q ss_pred ----CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC-CeEEEEeecCccCee
Q 003467 224 ----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVN 298 (817)
Q Consensus 224 ----dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~ 298 (817)
+...++|....+.....+. +|...+.++.|+++..+++++.++.+.+|.+.. +.....+..|. .+.
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~--------~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIV--------DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEE--------CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred cccCCCcCCEEEECCCCCeEECc--------CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 3356677544444555554 688999999999996667788889999997653 44556666655 467
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc-----------CCCccceeEeecccCC
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-----------HTHDVRALTVAVPISR 367 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~ 367 (817)
.++|+|||++|+++ .++.|.+|++.... +..+.. |...+.+++|++
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~------------------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~---- 305 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEK------------------IEKIEIGDLESPEDRIISIPSKFAEDFSP---- 305 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCC------------------EEECCCCCCCBCCSEEEECGGGGEEEEEE----
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceE------------------eeeeccCcccccccccccccccceeeecC----
Confidence 78999999988887 58999999983332 112222 444677787741
Q ss_pred CCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCcee-eecceeecCC
Q 003467 368 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH-LVHNTIFSHT 446 (817)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 446 (817)
|+++ .|++++ ++.+.+|+........ ...+.. .+..++|+ +
T Consensus 306 ----pdG~------------------------~la~~~-~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 306 ----LDGD------------------------LIAFVS-RGQAFIQDVSGTYVLK--------VPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp ----CGGG------------------------CEEEEE-TTEEEEECTTSSBEEE--------CSCCSCEEEEEECSS-S
T ss_pred ----CCCC------------------------EEEEEE-cCEEEEEcCCCCceEE--------ccCCCcceEEeeeEc-C
Confidence 4554 677666 8899999987643211 011222 56788999 9
Q ss_pred eEEEEEeCCeEEEE-EecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cCCceEEEEeecCCC
Q 003467 447 SLLLVQYSCRLDIL-SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV 524 (817)
Q Consensus 447 ~~~l~~~~~~i~i~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~l~~~~~~~~ 524 (817)
+..++..+....+| .++.... .+..+. .+...+.+++|||||++|+++ .++.+++|++..
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~--------------~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t--- 409 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTG--------------KAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET--- 409 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTC--------------CEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT---
T ss_pred CCeEEEEECCCceEEEEECCCC--------------CceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCC---
Confidence 98887766555666 3332211 123333 455778999999999999885 668999999865
Q ss_pred CCceEEEeeecCCccccceeEEEEecCCCEEEEEecCC----------cEEEEEccCCceeeeeccCcccccccCCCCCC
Q 003467 525 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR----------RIYVVDVSSSELLHTFTPCREEHDREIQPSEP 594 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (817)
+... .....+...+..++|||||++|++++.++ .|++||+.+++ +..+.. |..
T Consensus 410 g~~~-----~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~-----------~~~ 472 (1045)
T 1k32_A 410 GKPT-----VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT-----------ENS 472 (1045)
T ss_dssp CCEE-----EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC-----------SSS
T ss_pred CceE-----EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC-----------CCc
Confidence 2221 11224566788999999999999887654 89999999877 556665 778
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCCcce-------------------------------------------EEEE
Q 003467 595 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ-------------------------------------------HWFI 631 (817)
Q Consensus 595 ~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~-------------------------------------------~~~~ 631 (817)
.+..++|||||++|++++.++...+|+...... ...+
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l 552 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 552 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEc
Confidence 889999999999999999877766665432211 1111
Q ss_pred ecCCCCCeEEEEecCCCCCeEEEE-------------ecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEE
Q 003467 632 SRLEGASVTAAGFPPQNNNVLIIT-------------TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSF 698 (817)
Q Consensus 632 ~~~~~~~i~~l~~sp~d~~~l~~~-------------~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f 698 (817)
..+...+..++|+| |+.++++. .....|++||+.+++... +. ..+.+++|
T Consensus 553 -~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~------------l~---~~v~~~~~ 615 (1045)
T 1k32_A 553 -NVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------------VK---NNLTDLRL 615 (1045)
T ss_dssp -SCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE------------EE---EEEEEEEE
T ss_pred -CCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE------------ee---cCcceEEE
Confidence 12335788999999 88877751 224578999999887522 22 56889999
Q ss_pred CCCCCCCEEEEEcCceEEEEEcCC
Q 003467 699 SPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 699 ~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
||| +..+++.....+.++|+..
T Consensus 616 S~D--G~~l~~~~~~~i~~~d~~~ 637 (1045)
T 1k32_A 616 SAD--RKTVMVRKDDGKIYTFPLE 637 (1045)
T ss_dssp CTT--SCEEEEEETTSCEEEEESS
T ss_pred CCC--CCEEEEEcCCcEEEEeCcc
Confidence 998 4667777777899999855
No 71
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=323.22 Aligned_cols=318 Identities=12% Similarity=0.064 Sum_probs=250.7
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
..+|.+++|||||++||+|+.|++|+ |...++ .+.|| ...|.+++|+|+| .++++.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-------~l~gh-~~~v~~V~FsPdg-------------~~~~~~~ 71 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-------DINCN-SKNLFHVKEFPLE-------------FENKLDF 71 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-------CCSSB-GGGTEEEEEECCC-------------CCCTTTT
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc-------eecCC-CccEEEEEECCCC-------------CcceEEE
Confidence 47899999999999999999999999 765554 23566 8999999999986 2455555
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
|+.+... ...+ .|...|++++|+|+| .+
T Consensus 72 ~~~~~~~-~~~~-~~~~~V~~vawSPdG--------------------------------------------------~~ 99 (588)
T 2j04_A 72 ELAQQNG-LLNS-QPVCYPRVCKPSPID--------------------------------------------------DW 99 (588)
T ss_dssp SCCCSSC-SSTT-SCSCCEEEEEECSSS--------------------------------------------------SC
T ss_pred EeCCCce-Eeec-CCCCcEEEEEECCCC--------------------------------------------------CE
Confidence 5543222 2222 458899999999999 58
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccc-----eEEEEEEccCCCEEEEeeCCCcEEEEECCCCce-------EEE
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSG-----RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-------IYR 240 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~-------~~~ 240 (817)
||+++.||.|+|||..+ .+ ..+. |.. .|.+++|||||++|++|+.||+|++||+.++.. +..
T Consensus 100 LAs~s~dg~V~iwd~~~--~l---~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t 173 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK--ML---TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS 173 (588)
T ss_dssp EEEEETTSCEEEEETTE--EE---EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred EEEEeCCCcEEEEeCCc--ee---eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence 99999999999999643 22 4455 554 599999999999999999999999999998763 455
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeE---EEEe-ecCccCeeEEEEecCCCEEEEEccCC
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAH-SFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~-~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
+.... .+|...|.+++|+||| +++++.|++|++||+..+.. .+++ .+|...|.+++|+ ++.|++++ ++
T Consensus 174 i~~~~----~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~ 245 (588)
T 2j04_A 174 IRLSD----AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG 245 (588)
T ss_dssp EECSC----TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS
T ss_pred eeccc----ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC
Confidence 54221 2578899999999999 99999999999999998773 3566 4788999999999 68899887 69
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEe--ecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV--AVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
+|++|++.++. ......+|...|..+++ + |+++
T Consensus 246 tIkLWd~~~~~-----------------~~~~~~gh~~~V~~va~~~s---------~d~~------------------- 280 (588)
T 2j04_A 246 YVHKIDLKNYS-----------------ISSLKTGSLENFHIIPLNHE---------KEST------------------- 280 (588)
T ss_dssp EEEEEETTTTE-----------------EEEEECSCCSCCCEEEETTC---------SSCE-------------------
T ss_pred eEEEEECCCCe-----------------EEEEEcCCCceEEEEEeeeC---------CCCC-------------------
Confidence 99999998876 32333379999999999 6 7775
Q ss_pred cCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS 474 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~ 474 (817)
.|++++.||+ ++|..+ .+.++|++.+++..++.+++|+.....
T Consensus 281 -----~La~a~edG~-klw~~d-----------------------~~~~spd~~l~a~~d~~v~lW~~~g~~-------- 323 (588)
T 2j04_A 281 -----ILLMSNKTSY-KVLLED-----------------------ELHVTADNIIAPYLEKKFKKWSTIWNE-------- 323 (588)
T ss_dssp -----EEEECSSCEE-EEEESS-----------------------SEEEECCCSSHHHHHHHHHHTTTTTTS--------
T ss_pred -----EEEEEcCCCC-EEEeec-----------------------cEEECCCceEEEEcCCEEEEEECCCCc--------
Confidence 9999999999 999876 245778888887777788888653221
Q ss_pred CCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC
Q 003467 475 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH 511 (817)
Q Consensus 475 ~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~ 511 (817)
+. ...+...|.++++||||+.+|++.+
T Consensus 324 --------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 324 --------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred --------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 11 1122356899999999999998754
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-35 Score=312.04 Aligned_cols=217 Identities=17% Similarity=0.179 Sum_probs=182.1
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe------EEEEEeecCceEEEEeeecC----C
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK------QKIVLQSIDFSIWQMAVAPS----N 120 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~~----~ 120 (817)
....+.+| .+.|.+++|+| ++ |++++.||+|++||+.+++ ....+.+|...|.+++|+|+ +
T Consensus 8 ~~~~~~~h-~~~i~~~~~~~--~~------l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 8 TANAGKAH-DADIFSVSACN--SF------TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EEEESSCS-SSCEEEEEECS--SE------EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhh-hcCeEEEEecC--Ce------EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCC
Confidence 34566676 89999999998 55 9999999999999999988 78889999999999999998 4
Q ss_pred CccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc-----eeE
Q 003467 121 SSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE-----LIY 195 (817)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~ 195 (817)
... .+|++++.||.|++||+.++.. +
T Consensus 79 ~~~-----------------------------------------------~~l~s~~~dg~i~iw~~~~~~~~~~~~~-- 109 (397)
T 1sq9_A 79 FEL-----------------------------------------------CLVATTSFSGDLLFYRITREDETKKVIF-- 109 (397)
T ss_dssp EEE-----------------------------------------------EEEEEEETTSCEEEEEEEECTTTCCEEE--
T ss_pred ccc-----------------------------------------------cEEEEEcCCCCEEEEEccCCcccccccc--
Confidence 000 1899999999999999997665 4
Q ss_pred eeccCCc-----cceEEEEEEc----cCCCE-EEEeeCCCcEEEEECCC------CceEE-----EEEeecCCCCCCCce
Q 003467 196 HRSLPRV-----SGRVLSVTWS----ADGNM-LYSGSSDGYIRSWDAKL------GYEIY-----RITVGLGGLGSGPEL 254 (817)
Q Consensus 196 ~~~~~~h-----~~~v~~v~~s----~dg~~-l~s~~~dg~i~vwd~~~------g~~~~-----~~~~~~~~~~~~~~~ 254 (817)
..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+.... .....+..
T Consensus 110 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 187 (397)
T 1sq9_A 110 -EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV-ESPMTPSQ 187 (397)
T ss_dssp -EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEE-CCSSSSCC
T ss_pred -eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeee-ccccCCCC
Confidence 666777 6899999999 99999 99999999999999998 66665 554100 00014788
Q ss_pred eEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec---C---ccCeeEEEEecCCCEEEEEccC---CcEEEEEeec
Q 003467 255 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF---H---KGDVNALAAAPSHNRVFSTGSD---GQVILYKASC 325 (817)
Q Consensus 255 ~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h---~~~v~~l~~s~~~~~l~~~~~d---g~i~iw~~~~ 325 (817)
.|.+++|+|++.+++++.||.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| +.|++||+.+
T Consensus 188 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 188 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred CceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 89999999999888999999999999999999999998 9 9999999999999999999999 9999999876
Q ss_pred cc
Q 003467 326 ES 327 (817)
Q Consensus 326 ~~ 327 (817)
++
T Consensus 268 ~~ 269 (397)
T 1sq9_A 268 GE 269 (397)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 73
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-36 Score=322.21 Aligned_cols=261 Identities=15% Similarity=0.229 Sum_probs=213.2
Q ss_pred eccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCC---CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 9 IDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSP---GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 9 ~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +.. ..+...+ +| ...|.+++|+|++++ |+++
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~-~h-~~~v~~~~~~~~~~~------l~s~ 129 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-YSSSLTY-DC-SSTVTQITMIPNFDA------FAVS 129 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-CSCSEEE-EC-SSCEEEEEECTTSSE------EEEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-cceeeec-cC-CCCEEEEEEeCCCCE------EEEE
Confidence 389999999999999 999999999999999999976 431 1112333 34 789999999999987 9999
Q ss_pred eCCCeEEEEECC---CCeEEEEEeecCceEEEEeeecCC--CccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 85 SIDGSVSEWDLY---DLKQKIVLQSIDFSIWQMAVAPSN--SSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 85 ~~d~~i~vwd~~---~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
+.||+|++||+. +++....+..| .+..+.|+|++ ......
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~--------------------------------- 174 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRM--------------------------------- 174 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEE---------------------------------
T ss_pred eCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEE---------------------------------
Confidence 999999999995 77777777766 77888887742 111000
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCC--ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 237 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~ 237 (817)
.....+++.++++|+.||.|++||+.++..+ ..+.. |.+.|.+++|+|++++|++|+.||.|++||+++++.
T Consensus 175 ---~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 175 ---RAFVNEEKSLLVALTNLSRVIIFDIRTLERL---QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp ---EEEECSSCEEEEEEETTSEEEEEETTTCCEE---EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred ---EEEEcCCCCEEEEEeCCCeEEEEeCCCCeee---EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccE
Confidence 0001123469999999999999999877665 56666 899999999999999999999999999999999998
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEe----cCC-eEEEEcCCCcEEEEeCCCCeEEEEeec--------------------
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSL----RCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-------------------- 292 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~----~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------- 292 (817)
+..+.. .+...|.+++++ +++ .|++++.||.|++||+++++++..+.+
T Consensus 249 ~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 249 IRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp EEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred EEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 888763 477899999665 456 799999999999999999998887764
Q ss_pred ------CccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 293 ------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 293 ------h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
|...|.+++|+ ++++|++++.|+.|++||+.+++
T Consensus 322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 45568899999 77899999999999999998776
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=307.88 Aligned_cols=288 Identities=17% Similarity=0.262 Sum_probs=244.9
Q ss_pred cCCCc--eEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 11 WKPSP--VVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 11 ~h~~~--I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
+|... +.++++++ ..+++++.||.|+|||+.+++ ....+...+...|.+++|+|++++ |++++.||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~------l~~~~~dg 156 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS----VSALAETDESTYVASVKWSHDGSF------LSVGLGNG 156 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC----EEEEEECCTTCCEEEEEECTTSSE------EEEEETTS
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc----EeEeeecCCCCCEEEEEECCCCCE------EEEECCCC
Confidence 45444 34466664 567888899999999999987 455666656889999999999987 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|++||+.+++.+..+.+|...|.+++|++
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------- 186 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWNR-------------------------------------------------- 186 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEET--------------------------------------------------
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEECC--------------------------------------------------
Confidence 999999999999999999999999999943
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
..+++++.||.|++||+...... ...+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 187 --~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~------ 256 (401)
T 4aez_A 187 --HVLSSGSRSGAIHHHDVRIANHQ--IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT------ 256 (401)
T ss_dssp --TEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC------
T ss_pred --CEEEEEcCCCCEEEEecccCcce--eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec------
Confidence 38999999999999999844333 26778899999999999999999999999999999999999888876
Q ss_pred CCCCceeEEEeEEecCC--eEEEEc--CCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE--ccCCcEEEEE
Q 003467 249 GSGPELCIWSLLSLRCG--TLVSAD--STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST--GSDGQVILYK 322 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~--~~dg~i~iw~ 322 (817)
.|...|.+++|+|++ .+++++ .|+.|++||+.+++.+..+. +...|.+++|+|+++.++++ +.||.|++|+
T Consensus 257 --~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 257 --NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp --CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred --CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 688999999999987 466654 79999999999999998886 56789999999999999994 4899999999
Q ss_pred eecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE
Q 003467 323 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI 402 (817)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 402 (817)
+.++. ......+..|...|.+++++ |+++ +|+
T Consensus 334 ~~~~~---------------~~~~~~~~~h~~~v~~~~~s---------~dg~------------------------~l~ 365 (401)
T 4aez_A 334 YSSSG---------------LTKQVDIPAHDTRVLYSALS---------PDGR------------------------ILS 365 (401)
T ss_dssp EETTE---------------EEEEEEEECCSSCCCEEEEC---------TTSS------------------------EEE
T ss_pred cCCcc---------------ceeEEEecCCCCCEEEEEEC---------CCCC------------------------EEE
Confidence 98854 12444577899999999998 7876 999
Q ss_pred EecCCCeEEEEeCCccccc
Q 003467 403 SAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 403 s~~~dg~i~~~~~~~~~~~ 421 (817)
+++.||.|++|++.+....
T Consensus 366 s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTSEEEEEECCC----
T ss_pred EEeCCCcEEEEECCCCccc
Confidence 9999999999999876533
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-34 Score=330.51 Aligned_cols=294 Identities=17% Similarity=0.234 Sum_probs=241.6
Q ss_pred eeccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCC-----ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEE
Q 003467 196 HRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLG-----YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV 268 (817)
Q Consensus 196 ~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g-----~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~ 268 (817)
...+.+|.+.|++++|+|++ ++|++|+.|++|++||+.++ .....+. +|...|.+++|+|++ .|+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECTTSSEEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECCCCCEEE
Confidence 35688999999999999875 79999999999999999764 2344555 799999999999999 799
Q ss_pred EEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeec
Q 003467 269 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS 348 (817)
Q Consensus 269 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (817)
+|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++|+..... .......
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--------------~~~~~~~ 512 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--------------KYTISEG 512 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--------------EEEECSS
T ss_pred EEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--------------ceeeccC
Confidence 99999999999999999999999999999999999999999999999999999975432 1112233
Q ss_pred cccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCC
Q 003467 349 VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICP 428 (817)
Q Consensus 349 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~ 428 (817)
..+|...|.+++++ |++. ...+++++.|+.|++||+.+..
T Consensus 513 ~~~h~~~v~~~~~~---------~~~~----------------------~~~l~s~s~d~~v~vwd~~~~~--------- 552 (694)
T 3dm0_A 513 GEGHRDWVSCVRFS---------PNTL----------------------QPTIVSASWDKTVKVWNLSNCK--------- 552 (694)
T ss_dssp TTSCSSCEEEEEEC---------SCSS----------------------SCEEEEEETTSCEEEEETTTCC---------
T ss_pred CCCCCCcEEEEEEe---------CCCC----------------------cceEEEEeCCCeEEEEECCCCc---------
Confidence 45788889999987 5541 1378999999999999875311
Q ss_pred CCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE
Q 003467 429 APQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY 508 (817)
Q Consensus 429 ~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~ 508 (817)
T Consensus 553 -------------------------------------------------------------------------------- 552 (694)
T 3dm0_A 553 -------------------------------------------------------------------------------- 552 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccccccc
Q 003467 509 SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE 588 (817)
Q Consensus 509 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 588 (817)
.. ..+.+|...|++++|+||+++|++++.||.|++||+.+++.+..+.
T Consensus 553 ------------------~~-----~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--------- 600 (694)
T 3dm0_A 553 ------------------LR-----STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--------- 600 (694)
T ss_dssp ------------------EE-----EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB---------
T ss_pred ------------------EE-----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---------
Confidence 00 1233556679999999999999999999999999999999888877
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC------------------CCeEEEEecCCCCC
Q 003467 589 IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG------------------ASVTAAGFPPQNNN 650 (817)
Q Consensus 589 ~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~------------------~~i~~l~~sp~d~~ 650 (817)
+...|.+++|||++.+|++++. +.|+|||+++++....+..... ..+++++|+| +++
T Consensus 601 ---~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~ 675 (694)
T 3dm0_A 601 ---ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGS 675 (694)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSS
T ss_pred ---CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCC
Confidence 4668999999999999988765 4599999999887655532110 1378999999 999
Q ss_pred eEEEEecCCeEEEEEcCC
Q 003467 651 VLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 651 ~l~~~~~d~~i~vwd~~~ 668 (817)
+|++++.||.|++|++..
T Consensus 676 ~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 676 TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCeEEEEeccC
Confidence 999999999999999853
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-35 Score=319.83 Aligned_cols=292 Identities=15% Similarity=0.154 Sum_probs=232.3
Q ss_pred eccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee-cCCCCCCCceEEEeeC
Q 003467 9 IDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH-AGKMGLPGGRLFSSSI 86 (817)
Q Consensus 9 ~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~-~~~~~~~~~~l~s~~~ 86 (817)
...|...|+||+|+| ++++||+|+.||+|+|||+.+++.. ....+.+| .+.|++|+|+| ++.+ |++++.
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--~~~~~~gH-~~~V~~l~f~p~~~~~------l~s~s~ 185 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--TFIKGIGA-GGSITGLKFNPLNTNQ------FYASSM 185 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--EEECCCSS-SCCCCEEEECSSCTTE------EEEECS
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--eEEEccCC-CCCEEEEEEeCCCCCE------EEEEeC
Confidence 457888999999999 5789999999999999999877531 34455666 78999999998 5666 999999
Q ss_pred CCeEEEEECCCCeEEEEEeec--CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
||+|++||++++........+ ...+.+++|+|++
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 221 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-------------------------------------------- 221 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT--------------------------------------------
T ss_pred CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC--------------------------------------------
Confidence 999999999887654444333 3467889999998
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.+|++|+.||.|++||+. ++.+ ..+.+|...|.+++|+|++. +|++|+.|+.|++||+++++....+..
T Consensus 222 ------~~l~~g~~dg~i~~wd~~-~~~~---~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 222 ------RMVVTGDNVGNVILLNMD-GKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp ------TEEEEECSSSBEEEEESS-SCBC---CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred ------CEEEEEeCCCcEeeeccC-ccee---EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 599999999999999996 4444 77889999999999999986 788999999999999988765443321
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCcc------CeeEEEEecCCCEEEEEc---
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG------DVNALAAAPSHNRVFSTG--- 313 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~s~~~~~l~~~~--- 313 (817)
..+|...|.+++|+|+| .|++++.||.|++||+.++.....+..|.. .+....|+|++..+++++
T Consensus 292 -----~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 366 (435)
T 4e54_B 292 -----SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366 (435)
T ss_dssp -----CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCC
T ss_pred -----eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCC
Confidence 12588899999999999 799999999999999999888877766543 233456777777666654
Q ss_pred ---------cCCcEEEEEeecccCCCCCCCCCccccceEEEeecc-ccCCCcccee-EeecccCCCCCCCccccccccCC
Q 003467 314 ---------SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAHTHDVRAL-TVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 314 ---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l-~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
.++.|++|+..++. .+..+ ..|...|.++ +|+ |+++
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~-----------------~~~~l~~~~~~~v~s~~~fs---------pdg~------- 413 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGK-----------------MMCQLYDPESSGISSLNEFN---------PMGD------- 413 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCC-----------------EEEEECCSSCCCCCCEEEEC---------TTSS-------
T ss_pred CCeEEEEecCCCEEEEEECCCCc-----------------EEEEEeCCCCCcEEEEEEEC---------CCCC-------
Confidence 24579999998877 44444 5788889887 576 7775
Q ss_pred CCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+|++|+ |+.|++|++.+.+
T Consensus 414 -----------------~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 414 -----------------TLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp -----------------CEEEEC-SSEEEECCCC---
T ss_pred -----------------EEEEEc-CCcEEEEECCcCe
Confidence 888776 8899999998654
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=315.84 Aligned_cols=368 Identities=15% Similarity=0.102 Sum_probs=249.8
Q ss_pred CCCeEEEEECCCCeEEEEEeecCceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
.++.+++|+++.++....+.+|.+.|.+++|+| ++
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-------------------------------------------- 56 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-------------------------------------------- 56 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--------------------------------------------
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCC--------------------------------------------
Confidence 456788999999998999999999999999999 87
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEee----------ccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECC
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHR----------SLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~ 233 (817)
++|++|+.||.|++||+.++....... ...+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 57 ------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 57 ------RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ------CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred ------CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 599999999999999998665442111 1135999999999999 78899999999999999999
Q ss_pred CCceEEEEEeecCCCCCCCceeEEEeEEecCC----eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCE-
Q 003467 234 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR- 308 (817)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~- 308 (817)
+++....+. +...+.++.+++.+ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++
T Consensus 131 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 131 TLQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp TTEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE
T ss_pred CCccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE
Confidence 999888876 56678889998754 6999999999999999999999999999999999999999984
Q ss_pred EEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccc
Q 003467 309 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF 388 (817)
Q Consensus 309 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
+++++.||.|++||+......... ..................|...|.+++++ |+++
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~------------- 258 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLIT-LDQHNGKKSQAVESANTAHNGKVNGLCFT---------SDGL------------- 258 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEE-CCTTTTCSCCCTTTSSCSCSSCEEEEEEC---------TTSS-------------
T ss_pred EEEEcCCCcEEEEECCCCCccccc-ccccccccceeeccccccccCceeEEEEc---------CCCC-------------
Confidence 889999999999999775421000 00000000000112235677777777776 6664
Q ss_pred cccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCc
Q 003467 389 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~ 468 (817)
+|++++.|+.|++||+.+........
T Consensus 259 -----------~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------------------------- 284 (408)
T 4a11_B 259 -----------HLLTVGTDNRMRLWNSSNGENTLVNY------------------------------------------- 284 (408)
T ss_dssp -----------EEEEEETTSCEEEEETTTCCBCCCCC-------------------------------------------
T ss_pred -----------EEEEecCCCeEEEEECCCCccceecc-------------------------------------------
Confidence 77888888888888776533111000
Q ss_pred ccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEE
Q 003467 469 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 548 (817)
Q Consensus 469 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 548 (817)
..........+.....
T Consensus 285 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 300 (408)
T 4a11_B 285 ----------------------------------------------------------------GKVCNNSKKGLKFTVS 300 (408)
T ss_dssp ----------------------------------------------------------------CCCCCCCSSCCCCEEC
T ss_pred ----------------------------------------------------------------ccccccccccceeEEe
Confidence 0000000001111112
Q ss_pred ecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE
Q 003467 549 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 628 (817)
Q Consensus 549 spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 628 (817)
...+..+++++.++.|++||+.+++.+..+.+ |...|++++|+|++++|++++.||.|++||+++++..
T Consensus 301 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-----------HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CSSSSCEEEEEETTEEEEEETTTCCEEEEECC-----------CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred cCCCceEEEEecCCEEEEEECcCCcceeeecc-----------CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 23455667778899999999999999999998 8999999999999999999999999999999998865
Q ss_pred EEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 629 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 629 ~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
....... ....+.|.....+...+.++.+++|+...
T Consensus 370 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 370 PDDDETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------------------
T ss_pred CCCCceE----eccccccccceeecccCccCceeecCCcc
Confidence 4332211 22334442445566777889999998754
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=301.72 Aligned_cols=303 Identities=14% Similarity=0.196 Sum_probs=242.5
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS 275 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~ 275 (817)
..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+. .|...|.+++|+|++ .|++++.||.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------hcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 6688999999999999999999999999999999999999998887 689999999999998 7999999999
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC-----CcEEEEEeecccCCCCCCCCCccccceEEEeeccc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
|++||+.+++.+..+. |...|.+++|+|+++++++++.+ +.|.+|++......... ..........+.
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~------~~~~~~~~~~~~ 170 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL------TKVSEEPIHKII 170 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE------EEECSSCSEEEE
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee------cccccceeeecc
Confidence 9999999999998888 88999999999999999999998 99999999876521100 000000111122
Q ss_pred cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCC
Q 003467 351 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP 430 (817)
Q Consensus 351 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~ 430 (817)
.|..
T Consensus 171 ~~~~---------------------------------------------------------------------------- 174 (369)
T 3zwl_B 171 THEG---------------------------------------------------------------------------- 174 (369)
T ss_dssp CCTT----------------------------------------------------------------------------
T ss_pred CCcC----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-
Q 003467 431 QRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS- 509 (817)
Q Consensus 431 ~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~- 509 (817)
...+.+++++|++++++++
T Consensus 175 ------------------------------------------------------------~~~~~~~~~~~~~~~l~~~~ 194 (369)
T 3zwl_B 175 ------------------------------------------------------------LDAATVAGWSTKGKYIIAGH 194 (369)
T ss_dssp ------------------------------------------------------------CCCEEEEEECGGGCEEEEEE
T ss_pred ------------------------------------------------------------ccceeEEEEcCCCCEEEEEc
Confidence 0234444455555544442
Q ss_pred cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccC
Q 003467 510 DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREI 589 (817)
Q Consensus 510 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~ 589 (817)
.++.+++|++... ...+ ..+..+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus 195 ~dg~i~i~d~~~~--~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------- 257 (369)
T 3zwl_B 195 KDGKISKYDVSNN--YEYV-----DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------- 257 (369)
T ss_dssp TTSEEEEEETTTT--TEEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------
T ss_pred CCCEEEEEECCCC--cEeE-----EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----------
Confidence 3455555554320 1111 2233455679999999999999999999999999999999998888
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCC--------------cEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEE
Q 003467 590 QPSEPPITKMFTSSDGQWLAAVNCFG--------------DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 655 (817)
Q Consensus 590 ~~~~~~i~~l~~s~dg~~la~~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~ 655 (817)
+...+.+++|+|+++++++++.++ .+++||+.+++....+.. |...|++++|+| ++++|+++
T Consensus 258 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~s~ 333 (369)
T 3zwl_B 258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-HFGPLNTVAISP-QGTSYASG 333 (369)
T ss_dssp --CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-CSSCEEEEEECT-TSSEEEEE
T ss_pred --CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-ccCcEEEEEECC-CCCEEEEE
Confidence 578899999999999999999988 899999999998877754 567999999999 99999999
Q ss_pred ecCCeEEEEEcCCCcc
Q 003467 656 TSSNQVYVFDVEAKQL 671 (817)
Q Consensus 656 ~~d~~i~vwd~~~~~~ 671 (817)
+.|+.|++|+++.+.+
T Consensus 334 ~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ETTSEEEEEEECHHHH
T ss_pred cCCCeEEEEECccccc
Confidence 9999999999988753
No 79
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-35 Score=309.08 Aligned_cols=216 Identities=16% Similarity=0.209 Sum_probs=176.5
Q ss_pred EEEEEcCCCCCcEEEEEEeec---CCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee-----cCceEEEEeeecCCCc
Q 003467 51 CQLTVHGDPKSRISSLVWCHA---GKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-----IDFSIWQMAVAPSNSS 122 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~---~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~ 122 (817)
+...+..+|...|.+++|+|+ +. ..+++++.++.|++||+.+++.+..+.. |...|.+++|+|++..
T Consensus 9 ~~~~~~~~h~~~v~~i~~~p~~~~~~-----~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 9 CVNSLKEDHNQPLFGVQFNWHSKEGD-----PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT 83 (366)
T ss_dssp EEEEEECTTCSCEEEEEECTTCCTTS-----CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT
T ss_pred EEEEeecCCCCceEEEEEecccCCCC-----ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC
Confidence 344555445899999999985 33 2367777777999999999888777764 4578999999999521
Q ss_pred cceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc
Q 003467 123 LMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV 202 (817)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h 202 (817)
.+++|++|+.||.|++||+.+++.+ ..+.+|
T Consensus 84 ----------------------------------------------~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~ 114 (366)
T 3k26_A 84 ----------------------------------------------SHPLLAVAGSRGIIRIINPITMQCI---KHYVGH 114 (366)
T ss_dssp ----------------------------------------------CCEEEEEEETTCEEEEECTTTCCEE---EEEESC
T ss_pred ----------------------------------------------CCCEEEEecCCCEEEEEEchhceEe---eeecCC
Confidence 0148999999999999999876655 677899
Q ss_pred cceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEe
Q 003467 203 SGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD 280 (817)
Q Consensus 203 ~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd 280 (817)
...|.+++|+| ++.+|++++.||.|++||+.+++.+..+.. ...|...|.+++|+|++ .|++++.||.|++||
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 189 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc-----cccccCceeEEEECCCCCEEEEecCCCCEEEEE
Confidence 99999999999 999999999999999999999988877731 11688999999999999 799999999999999
Q ss_pred CCCCeEEEEeec----------------------------CccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 281 SRHGTLLQAHSF----------------------------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 281 ~~~~~~~~~~~~----------------------------h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+++++.+..+.. |...|.+++|+ ++++++++.|+.|++|++.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 190 INSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp SCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTT
T ss_pred CCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcc
Confidence 998765544433 88888888888 6688888888888888876644
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.1e-34 Score=291.95 Aligned_cols=293 Identities=19% Similarity=0.273 Sum_probs=243.1
Q ss_pred eeeeeccCCCce------------EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-CCCCcEEEEEEeec
Q 003467 5 RNSSIDWKPSPV------------VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-DPKSRISSLVWCHA 71 (817)
Q Consensus 5 r~r~~~~h~~~I------------~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-~~~~~V~~l~~s~~ 71 (817)
.||++.--|..| ++|+||+++ +||+|. |++|+|||+.+++ +...+.. .|...|++++|+|+
T Consensus 5 ~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~----~~~~~~~~~~~~~V~~v~~~~~ 78 (318)
T 4ggc_A 5 TCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGD----ILQLLQMEQPGEYISSVAWIKE 78 (318)
T ss_dssp -CCCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCC----EEEEEECCSTTCCEEEEEECTT
T ss_pred CCcccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCC----EEEEEEecCCCCeEEEEEECCC
Confidence 356665555444 679999986 888875 8999999999987 4555542 23778999999999
Q ss_pred CCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 72 GKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 72 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
+++ |++|+.|++|++||+++++++..+.+|...+.++.+.+
T Consensus 79 ~~~------l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~--------------------------------- 119 (318)
T 4ggc_A 79 GNY------LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--------------------------------- 119 (318)
T ss_dssp SSE------EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---------------------------------
T ss_pred CCE------EEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---------------------------------
Confidence 988 99999999999999999999999999999988766653
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEE
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 231 (817)
..+++++.++.+++|+....... ...+.+|...+.+++|++++++|++++.||.|++||
T Consensus 120 -------------------~~l~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 120 -------------------YILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp -------------------TEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -------------------CEEEEEecCCceEeeecCCCcee--EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 38999999999999998755443 267789999999999999999999999999999999
Q ss_pred CCCCceEEEEEeecCCCCCCCceeEEEeEEecCC----eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC
Q 003467 232 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
+.+++........ ...+...|.++.+++++ .+++++.++.|++||.......... .+...+..++|+++++
T Consensus 179 ~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 179 SAPGEGGWVPLQT----FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYK 253 (318)
T ss_dssp SSCBTTBSCCSEE----ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTT
T ss_pred CCCCcccccceee----ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeeccccc
Confidence 9987643221110 01577889999999877 2456788999999999988776655 4678899999999999
Q ss_pred EEEEEc--cCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCC
Q 003467 308 RVFSTG--SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP 385 (817)
Q Consensus 308 ~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (817)
.+++++ .|+.|++||+.+++ .+..+.+|...|.+++|+ |+++
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~-----------------~~~~l~gH~~~V~~l~~s---------pdg~---------- 297 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMA-----------------KVAELKGHTSRVLSLTMS---------PDGA---------- 297 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCC-----------------EEEEECCCSSCEEEEEEC---------TTSS----------
T ss_pred ceEEEEEcCCCEEEEEECCCCc-----------------EEEEEcCCCCCEEEEEEc---------CCCC----------
Confidence 888754 69999999999887 788999999999999998 8886
Q ss_pred ccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 386 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 386 ~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+|+||+.|++|++||+.+.
T Consensus 298 --------------~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 --------------TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp --------------CEEEEETTTEEEEECCSCC
T ss_pred --------------EEEEEecCCeEEEEECCCC
Confidence 9999999999999998753
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.2e-34 Score=306.43 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=247.3
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
..|...|+|+++ ++++||+|+.||.|++||+.+++ +...+.+| ...|.+++| ++++ |++++.||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h-~~~v~~l~~--~~~~------l~sg~~dg~ 194 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGH-TGSVLCLQY--DERV------IITGSSDST 194 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCC-SSCEEEEEC--CSSE------EEEEETTSC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----EEEEEcCC-CCcEEEEEE--CCCE------EEEEcCCCe
Confidence 456778999887 79999999999999999999887 57788887 789999999 6666 999999999
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
|++||+.+++++..+.+|...|.+++|++
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------------------------------------- 223 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN--------------------------------------------------- 223 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECCT---------------------------------------------------
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEEcC---------------------------------------------------
Confidence 99999999999999999999999999974
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
..+++|+.||.|++||+.++........+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 224 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------- 293 (435)
T 1p22_A 224 -GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN------- 293 (435)
T ss_dssp -TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-------
T ss_pred -CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-------
Confidence 28999999999999999977776666778899999999999 78899999999999999999999999888
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
+|...|.++.+. +..+++|+.||.|++||+++++++..+.+|...|.+++| ++++|++|+.||.|++||+..+...
T Consensus 294 -~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 294 -GHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp -CCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred -CCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence 688899999994 458999999999999999999999999999999999999 7889999999999999999876521
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCe
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK 409 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 409 (817)
... .....+..+..|...|.++++. + ..|++++.||.
T Consensus 370 ~~~--------~~~~~~~~~~~h~~~v~~l~~~-----------~------------------------~~l~s~s~Dg~ 406 (435)
T 1p22_A 370 RAP--------AGTLCLRTLVEHSGRVFRLQFD-----------E------------------------FQIVSSSHDDT 406 (435)
T ss_dssp TSC--------TTTTEEEEECCCSSCCCCEEEC-----------S------------------------SCEEECCSSSE
T ss_pred ccc--------ccchheeeccCCCCCeEEEEeC-----------C------------------------CEEEEEeCCCE
Confidence 100 0011456778899999999872 2 38999999999
Q ss_pred EEEEeCCccc
Q 003467 410 LFAYCANEFT 419 (817)
Q Consensus 410 i~~~~~~~~~ 419 (817)
|++||+.+..
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999998754
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.5e-34 Score=303.46 Aligned_cols=311 Identities=12% Similarity=0.108 Sum_probs=250.4
Q ss_pred CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc--eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcE
Q 003467 200 PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV 276 (817)
Q Consensus 200 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i 276 (817)
..|.+.|.+++|+|++++|++++.|+.|++||+.+++ .+..+. +|...|.+++|+|++ .|++++.||.|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------EHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------CCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 3488999999999999999999999999999999887 777776 689999999999999 79999999999
Q ss_pred EEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC
Q 003467 277 QFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH 354 (817)
Q Consensus 277 ~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (817)
++||+++++.... +..|...|.+++|+|++++|++++.|+.|++|++..... .+........|..
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------------~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------------WWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------------EEEEEEECTTCCS
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------------ceeeeeeecccCC
Confidence 9999998875544 367899999999999999999999999999999987651 1222334477899
Q ss_pred ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCc
Q 003467 355 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 434 (817)
Q Consensus 355 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~ 434 (817)
.|.+++++ |+++ +|++++.|+.+++||+.......... .
T Consensus 144 ~i~~~~~~---------~~~~------------------------~l~~~~~dg~i~~~d~~~~~~~~~~~------~-- 182 (372)
T 1k8k_C 144 TVLSLDWH---------PNSV------------------------LLAAGSCDFKCRIFSAYIKEVEERPA------P-- 182 (372)
T ss_dssp CEEEEEEC---------TTSS------------------------EEEEEETTSCEEEEECCCTTTSCCCC------C--
T ss_pred CeeEEEEc---------CCCC------------------------EEEEEcCCCCEEEEEccccccccccc------c--
Confidence 99999998 7775 99999999999999986432100000 0
Q ss_pred eeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCce
Q 003467 435 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP 514 (817)
Q Consensus 435 ~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i 514 (817)
..|. ..
T Consensus 183 -----------------------~~~~------------------------------~~--------------------- 188 (372)
T 1k8k_C 183 -----------------------TPWG------------------------------SK--------------------- 188 (372)
T ss_dssp -----------------------BTTB------------------------------SC---------------------
T ss_pred -----------------------cccc------------------------------cc---------------------
Confidence 0000 00
Q ss_pred EEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCC
Q 003467 515 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 594 (817)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (817)
+ ..+..+ ..+..|...+.+++|+|++++|++++.|+.|++||+.+++.+..+.. |..
T Consensus 189 ----~---~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~ 245 (372)
T 1k8k_C 189 ----M---PFGELM-----FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-----------ETL 245 (372)
T ss_dssp ----C---CTTCEE-----EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-----------SSC
T ss_pred ----c---chhhhe-----EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-----------CCC
Confidence 0 001111 23445666899999999999999999999999999999999999987 888
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEECCC--cceE--------------------------------------EEEecC
Q 003467 595 PITKMFTSSDGQWLAAVNCFGDVYIFNLEI--QRQH--------------------------------------WFISRL 634 (817)
Q Consensus 595 ~i~~l~~s~dg~~la~~~~dg~i~vwd~~~--~~~~--------------------------------------~~~~~~ 634 (817)
.|++++|+|++++|+++ .|+.|++|++.+ ++.. ..+...
T Consensus 246 ~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
T 1k8k_C 246 PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 324 (372)
T ss_dssp CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccc
Confidence 99999999999999988 899999999987 4210 122346
Q ss_pred CCCCeEEEEecCCCC---CeEEEEecCCeEEEEEcCCCc
Q 003467 635 EGASVTAAGFPPQNN---NVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~---~~l~~~~~d~~i~vwd~~~~~ 670 (817)
|...|++++|++.++ .+|++++.||.|++|++.+++
T Consensus 325 h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 325 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 778999999775376 899999999999999998764
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.8e-35 Score=305.06 Aligned_cols=292 Identities=11% Similarity=0.118 Sum_probs=223.3
Q ss_pred CceEEEEECCCCCeEEEEecCC-------cEEEEecCCCCCC------cEEEEEEcCCCCCcEEEEEEeecCCC-----C
Q 003467 14 SPVVALATSADDSQVAAAREDG-------SLEIWLVSPGTSG------WHCQLTVHGDPKSRISSLVWCHAGKM-----G 75 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg-------~i~iwd~~~~~~~------~~~~~~~~g~~~~~V~~l~~s~~~~~-----~ 75 (817)
.||.|++|+|||++||+|+.+. .|+||++...... ......+.+| ...|.+++++++ . .
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~-~~~v~s~~~~~~--~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN-DDSPTAIDASKG--IILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT-SCCCCEEEEETT--EEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC-CCceEEEEeCCC--EEEEEEC
Confidence 4899999999999999997543 5999999765431 1223455666 677888776543 2 0
Q ss_pred CCCceEEEeeCCCeEEEEECCCCeEEE----EE-----eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCC
Q 003467 76 LPGGRLFSSSIDGSVSEWDLYDLKQKI----VL-----QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSD 146 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~-----~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (817)
....+|++++.|+.+++|++.++.... .. ..+...+.+++|+|||..+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l----------------------- 148 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA----------------------- 148 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE-----------------------
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE-----------------------
Confidence 000123344568889999987653221 11 1234568899999999532
Q ss_pred CccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCc
Q 003467 147 DHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 226 (817)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~ 226 (817)
.+|+++.|+.|+|||+.++..+ ..+ .|.+.|.+++|+|||++|++++.+ .
T Consensus 149 -------------------------a~as~~~d~~i~iwd~~~~~~~---~~~-~~~~~V~~v~fspdg~~l~s~s~~-~ 198 (365)
T 4h5i_A 149 -------------------------AIASSKVPAIMRIIDPSDLTEK---FEI-ETRGEVKDLHFSTDGKVVAYITGS-S 198 (365)
T ss_dssp -------------------------EEEESCSSCEEEEEETTTTEEE---EEE-ECSSCCCEEEECTTSSEEEEECSS-C
T ss_pred -------------------------EEEECCCCCEEEEeECCCCcEE---EEe-CCCCceEEEEEccCCceEEeccce-e
Confidence 3445568999999999876654 334 477889999999999999999855 6
Q ss_pred EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC----cEEEEeCCCCeE----EEEeecCccCe
Q 003467 227 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG----SVQFWDSRHGTL----LQAHSFHKGDV 297 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg----~i~iwd~~~~~~----~~~~~~h~~~v 297 (817)
+++|+..+++.+..... ..|...|.+++|+|++ .+++++.++ .+++|+...+.. ...+.+|...|
T Consensus 199 ~~~~~~~~~~~~~~~~~------~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTD------FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI 272 (365)
T ss_dssp EEEEETTTCCEEEEECC------CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE
T ss_pred EEEEEeccCcceeeeec------CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe
Confidence 77788788877665442 2688999999999999 678887776 588898876543 45677899999
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeec-cccCCCccceeEeecccCCCCCCCcccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-VRAHTHDVRALTVAVPISREDPLPEDKV 376 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 376 (817)
++++|+|||++|++|+.|++|++||+.+++ ++.. +.+|...|++++|+ ||++
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~-----------------~~~~~~~gH~~~V~~v~fS---------pdg~- 325 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDLS-----------------MSKIFKQAHSFAITEVTIS---------PDST- 325 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTE-----------------EEEEETTSSSSCEEEEEEC---------TTSC-
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCCc-----------------EEEEecCcccCCEEEEEEC---------CCCC-
Confidence 999999999999999999999999999877 5655 58999999999998 8987
Q ss_pred ccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 377 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
+|+||+.|++|++|++..
T Consensus 326 -----------------------~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 326 -----------------------YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -----------------------EEEEEETTSEEEEEECCT
T ss_pred -----------------------EEEEEeCCCeEEEEEcCC
Confidence 999999999999999964
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.3e-34 Score=303.77 Aligned_cols=278 Identities=21% Similarity=0.317 Sum_probs=240.4
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEc--CCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVH--GDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
++.|+||++ ++||+|. |++|+|||..+++ +...+. +| ...|++|+|+|+|++ |++|+.||+|++|
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~----~~~~~~~~~~-~~~V~sv~fspdg~~------lasgs~Dg~v~iW 174 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD----ILQLLQMEQP-GEYISSVAWIKEGNY------LAVGTSSAEVQLW 174 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCC----EEEEEECCST-TCCEEEEEECTTSSE------EEEEETTSCEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCC----EEEEEEecCC-CCcEEEEEECCCCCE------EEEEECCCeEEEE
Confidence 356999975 5899886 8999999999987 344443 44 678999999999988 9999999999999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
|+.+++++..+.+|...+.++++++ ..|
T Consensus 175 d~~~~~~~~~~~~h~~~v~~~s~~~----------------------------------------------------~~l 202 (420)
T 4gga_A 175 DVQQQKRLRNMTSHSARVGSLSWNS----------------------------------------------------YIL 202 (420)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEET----------------------------------------------------TEE
T ss_pred EcCCCcEEEEEeCCCCceEEEeeCC----------------------------------------------------CEE
Confidence 9999999999999999999988764 389
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce----EEEEEeecCCCC
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE----IYRITVGLGGLG 249 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~----~~~~~~~~~~~~ 249 (817)
++|+.|+.+++||....... ...+.+|...+..+.|+|+++++++++.|+.|++|+..+++. +....
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~--~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~------- 273 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT------- 273 (420)
T ss_dssp EEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-------
T ss_pred EEEeCCCceeEeeeccccee--eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-------
Confidence 99999999999998754433 367889999999999999999999999999999999987753 23333
Q ss_pred CCCceeEEEeEEecCC--eEEE--EcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc--cCCcEEEEEe
Q 003467 250 SGPELCIWSLLSLRCG--TLVS--ADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG--SDGQVILYKA 323 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~--~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~--~dg~i~iw~~ 323 (817)
.+...|.+++|+|++ .+++ |+.|++|++||+.+++++..+..| ..+.++.|+++++.+++++ .|+.|++||+
T Consensus 274 -~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 274 -QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp -CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred -ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 688899999999987 3443 567999999999999999888765 5789999999999998765 6999999999
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.+++ .+..+.+|...|.+++|+ |+++ +|+|
T Consensus 352 ~~~~-----------------~v~~l~gH~~~V~~l~~s---------pdg~------------------------~l~S 381 (420)
T 4gga_A 352 PTMA-----------------KVAELKGHTSRVLSLTMS---------PDGA------------------------TVAS 381 (420)
T ss_dssp TTCC-----------------EEEEECCCSSCEEEEEEC---------TTSS------------------------CEEE
T ss_pred CCCc-----------------EEEEEcCCCCCEEEEEEc---------CCCC------------------------EEEE
Confidence 9887 788999999999999998 8886 9999
Q ss_pred ecCCCeEEEEeCCccc
Q 003467 404 AGDDTKLFAYCANEFT 419 (817)
Q Consensus 404 ~~~dg~i~~~~~~~~~ 419 (817)
|+.|++|++||+.+..
T Consensus 382 ~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 382 AAADETLRLWRCFELD 397 (420)
T ss_dssp EETTTEEEEECCSCSS
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997644
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-34 Score=299.30 Aligned_cols=261 Identities=19% Similarity=0.249 Sum_probs=226.5
Q ss_pred eeeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee--cCCCCCCCceE
Q 003467 4 YRNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH--AGKMGLPGGRL 81 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~--~~~~~~~~~~l 81 (817)
|..+++.+|.+.|++++|+|++++||+|+.||.|+|||+.++...+.+...+.+| ...|.+++|+| ++++ |
T Consensus 2 ~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~d~~~------l 74 (351)
T 3f3f_A 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWASPEYGRI------I 74 (351)
T ss_dssp CCCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC-SSCEEEEEECCGGGCSE------E
T ss_pred CccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC-CCcEEEEEEcCCCCCCE------E
Confidence 5578899999999999999999999999999999999999876555667778877 78999999999 5777 9
Q ss_pred EEeeCCCeEEEEECCCC---------eEEEEEeecCceEEEEeeecC--CCccceeeccCccccCccccCCCCCCCCccc
Q 003467 82 FSSSIDGSVSEWDLYDL---------KQKIVLQSIDFSIWQMAVAPS--NSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 150 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (817)
++++.|++|++||+.++ +++..+..|...|.+++|+|+ +
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------ 124 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG------------------------------ 124 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC------------------------------
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC------------------------------
Confidence 99999999999999987 668888899999999999998 6
Q ss_pred cccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEe----------eccCCccceEEEEEEccC---CCE
Q 003467 151 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH----------RSLPRVSGRVLSVTWSAD---GNM 217 (817)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~~h~~~v~~v~~s~d---g~~ 217 (817)
.++++++.||.|++||+.++..+... .....|...+.+++|+|+ +.+
T Consensus 125 --------------------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 184 (351)
T 3f3f_A 125 --------------------LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 184 (351)
T ss_dssp --------------------SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE
T ss_pred --------------------cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE
Confidence 48999999999999999866543110 011268889999999997 999
Q ss_pred EEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-----eEEEEcCCCcEEEEeCCCC--------
Q 003467 218 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG-------- 284 (817)
Q Consensus 218 l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~s~~~dg~i~iwd~~~~-------- 284 (817)
|++++.|+.+.+|+...++....... .+|...|.+++|+|++ .|++++.||.|++||++.+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 185 LAVSALEQAIIYQRGKDGKLHVAAKL------PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp EEEEETTEEEEEEECTTSCEEEEEEC------CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred EEEecCCCcEEEEccCCCceeeeeec------CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 99999999998888877765333332 1688999999999996 6999999999999999864
Q ss_pred --------------------------------------eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 285 --------------------------------------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 285 --------------------------------------~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+.+..+.+|...|.+++|+|++++|++++.||.|++|++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 677888899999999999999999999999999999999876
Q ss_pred c
Q 003467 327 S 327 (817)
Q Consensus 327 ~ 327 (817)
.
T Consensus 339 ~ 339 (351)
T 3f3f_A 339 N 339 (351)
T ss_dssp S
T ss_pred c
Confidence 5
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=313.91 Aligned_cols=251 Identities=13% Similarity=0.213 Sum_probs=207.2
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCC-------CCcEEEEEEcCCCC------------CcEEEEEEeecC
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGT-------SGWHCQLTVHGDPK------------SRISSLVWCHAG 72 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~g~~~------------~~V~~l~~s~~~ 72 (817)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ..+.+...+.+| . ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH-EPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECC-CCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccc-cccccccccccccCceEEEEEcCCC
Confidence 46899999999999999999999999999998765 233456778887 5 789999999998
Q ss_pred CCCCCCceEEEeeCCCeEEEEECCCCeEE---------------------------------------EE-EeecCceEE
Q 003467 73 KMGLPGGRLFSSSIDGSVSEWDLYDLKQK---------------------------------------IV-LQSIDFSIW 112 (817)
Q Consensus 73 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~i~ 112 (817)
.. .+|++++.|++|++||+.++... .. ..+|...|.
T Consensus 106 ~~----~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 106 NA----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp SS----SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred Cc----ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 32 23999999999999999875542 12 357999999
Q ss_pred EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc
Q 003467 113 QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE 192 (817)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 192 (817)
+++|+|++ ++|++| .||.|++||+.....
T Consensus 182 ~~~~~~~~--------------------------------------------------~~l~s~-~d~~i~iwd~~~~~~ 210 (447)
T 3dw8_B 182 SISINSDY--------------------------------------------------ETYLSA-DDLRINLWHLEITDR 210 (447)
T ss_dssp EEEECTTS--------------------------------------------------SEEEEE-CSSEEEEEETTEEEE
T ss_pred EEEEcCCC--------------------------------------------------CEEEEe-CCCeEEEEECCCCCc
Confidence 99999988 488888 799999999973332
Q ss_pred eeEe-----eccCCccceEEEEEEccCC-CEEEEeeCCCcEEEEECCCCce----EEEEEeecCCCCCCCce--------
Q 003467 193 LIYH-----RSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYE----IYRITVGLGGLGSGPEL-------- 254 (817)
Q Consensus 193 ~~~~-----~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~g~~----~~~~~~~~~~~~~~~~~-------- 254 (817)
.... ..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+. .+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 282 (447)
T 3dw8_B 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--------EPEDPSNRSFFS 282 (447)
T ss_dssp EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--------CC-----CCHHH
T ss_pred eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--------cCCCcccccccc
Confidence 2111 1467899999999999999 9999999999999999999886 56665 3444
Q ss_pred ----eEEEeEEecCC-eEEEEcCCCcEEEEeCCC-CeEEEEeecCccC---------------eeEEEEecCCCEEEEEc
Q 003467 255 ----CIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGD---------------VNALAAAPSHNRVFSTG 313 (817)
Q Consensus 255 ----~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~s~~~~~l~~~~ 313 (817)
.|.+++|+|++ .|++++. +.|++||+++ ++++..+..|... +..++|+|++++|++++
T Consensus 283 ~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 283 EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 89999999999 6777777 9999999997 8888889888642 33499999999999999
Q ss_pred cCCcEEEEEeeccc
Q 003467 314 SDGQVILYKASCES 327 (817)
Q Consensus 314 ~dg~i~iw~~~~~~ 327 (817)
.||.|++||+.+++
T Consensus 362 ~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 362 YNNFFRMFDRNTKR 375 (447)
T ss_dssp STTEEEEEETTTCC
T ss_pred cCCEEEEEEcCCCc
Confidence 99999999998876
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-34 Score=309.88 Aligned_cols=303 Identities=15% Similarity=0.128 Sum_probs=233.3
Q ss_pred eccCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCC
Q 003467 197 RSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADST 273 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~d 273 (817)
....+|..+|+||+|+| ++.+||+|+.||.|+|||+.+++....+.. .+|...|.+++|+| ++ .|++++.|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 34556888999999999 567999999999999999988876555442 26999999999998 45 89999999
Q ss_pred CcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc
Q 003467 274 GSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 351 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (817)
|+|++||++++........ +...+.+++|+|++++|++|+.||.|++||+... .+..+.+
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------------------~~~~~~~ 248 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------------------ELWNLRM 248 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------------------BCCCSBC
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------------------eeEEEec
Confidence 9999999987654433333 3446789999999999999999999999998654 3567789
Q ss_pred CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCC
Q 003467 352 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 431 (817)
Q Consensus 352 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 431 (817)
|...|.+++|+ |++. .++++|+.|+.|++||+.......
T Consensus 249 h~~~v~~v~~~---------p~~~-----------------------~~~~s~s~d~~v~iwd~~~~~~~~--------- 287 (435)
T 4e54_B 249 HKKKVTHVALN---------PCCD-----------------------WFLATASVDQTVKIWDLRQVRGKA--------- 287 (435)
T ss_dssp CSSCEEEEEEC---------TTCS-----------------------SEEEEEETTSBCCEEETTTCCSSS---------
T ss_pred ccceEEeeeec---------CCCc-----------------------eEEEEecCcceeeEEecccccccc---------
Confidence 99999999997 6653 488999999999999987532100
Q ss_pred CCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcC
Q 003467 432 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH 511 (817)
Q Consensus 432 ~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~ 511 (817)
T Consensus 288 -------------------------------------------------------------------------------- 287 (435)
T 4e54_B 288 -------------------------------------------------------------------------------- 287 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 512 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 512 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
.+ .....|...|++++|+|||++|++++.||.|+|||+.+++....+..+.....
T Consensus 288 ---------------~~-----~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----- 342 (435)
T 4e54_B 288 ---------------SF-----LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF----- 342 (435)
T ss_dssp ---------------CC-----SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-----
T ss_pred ---------------eE-----EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-----
Confidence 00 11234556789999999999999999999999999999888777765321110
Q ss_pred CCCceeEEEEccCCCEEEEEe------------CCCcEEEEECCCcceEEEEecCCCCCeEEE-EecCCCCCeEEEEecC
Q 003467 592 SEPPITKMFTSSDGQWLAAVN------------CFGDVYIFNLEIQRQHWFISRLEGASVTAA-GFPPQNNNVLIITTSS 658 (817)
Q Consensus 592 ~~~~i~~l~~s~dg~~la~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~l~~~~~d 658 (817)
....+....|+|++.+++++. .++.|++||..+++....+...|...|.++ +|+| ++.+|++++ |
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d 420 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-G 420 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-S
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-C
Confidence 011233456666666666654 335799999999998888877777788887 6999 999998875 8
Q ss_pred CeEEEEEcCCCcc
Q 003467 659 NQVYVFDVEAKQL 671 (817)
Q Consensus 659 ~~i~vwd~~~~~~ 671 (817)
++|++||++.++.
T Consensus 421 ~~i~iW~~~~gk~ 433 (435)
T 4e54_B 421 YHILIWSQQEART 433 (435)
T ss_dssp SEEEECCCC----
T ss_pred CcEEEEECCcCee
Confidence 8999999998863
No 88
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=5e-33 Score=331.96 Aligned_cols=503 Identities=11% Similarity=0.040 Sum_probs=338.5
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecC------CcEEEEecCCCCCCcEEEEEEcCCCCCcE-------EEEEEeec
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAARED------GSLEIWLVSPGTSGWHCQLTVHGDPKSRI-------SSLVWCHA 71 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~g~~~~~V-------~~l~~s~~ 71 (817)
..+.+..|+..|.+++|||||++||+++.+ ..|.+||+.+++ ...+.+| ...+ .+++||||
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-----~~~lt~~-~~~~~~~~~~~~~~~~SpD 117 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-----IKRITYF-SGKSTGRRMFTDVAGFDPD 117 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-----EEECCCC-CEEEETTEECSEEEEECTT
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-----eEEcccC-CCcccccccccccccCCCC
Confidence 356678899999999999999999988543 379999998875 4566666 5677 99999999
Q ss_pred CCCCCCCceEEEeeCC------CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCcc----------ccC
Q 003467 72 GKMGLPGGRLFSSSID------GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDH----------IGN 135 (817)
Q Consensus 72 ~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~----------~~~ 135 (817)
|+. +++++.+ ..|.+||+.+++....... ....++|+| | .+ +....... ...
T Consensus 118 g~l------l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~~~sp-G-~l-~~~~~~~~~~~~~~~~g~~~~ 185 (1045)
T 1k32_A 118 GNL------IISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHILFAD-G-RR-VIGRNTFELPHWKGYRGGTRG 185 (1045)
T ss_dssp CCE------EEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEEEEET-T-EE-EEEESCSCCTTSTTCCSTTCC
T ss_pred CEE------EEEECCcCCCcccceEEEEECCCCCeEEecCC---CcceeeeCC-C-EE-EEeccCCCccccccccCCCcC
Confidence 986 8888754 4688888888875443332 234567998 6 33 33221110 011
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccC
Q 003467 136 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSAD 214 (817)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d 214 (817)
.+|..... .....+ .++... ........+..++++..++.+.||.+.. +... +.+..|. .+..++|+||
T Consensus 186 ~lw~~~~~-~~~~~l----~~~~~~-v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~---~~l~~~~-~~~~~~~SpD 255 (1045)
T 1k32_A 186 KIWIEVNS-GAFKKI----VDMSTH-VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL---RKHTSFT-DYYPRHLNTD 255 (1045)
T ss_dssp EEEEEEET-TEEEEE----ECCSSC-CEEEEEETTEEEEEECTTSSCEEEEEETTSCSC---EECCCCC-SSCEEEEEES
T ss_pred CEEEECCC-CCeEEC----cCCCCc-ccceEEeCCEEEEEEeccCceEEEEEeCCCCcc---eEecCCC-CcceeeEcCC
Confidence 11111000 000000 111111 1111122235667778889999998863 3333 4455554 3567799999
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEEEeecCC---CCCCCceeEEEeEEe-cCC-eEEEEcCCCcEEEEeCCCCeEEEE
Q 003467 215 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG---LGSGPELCIWSLLSL-RCG-TLVSADSTGSVQFWDSRHGTLLQA 289 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~---~~~~~~~~v~~v~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 289 (817)
|++|+++ .++.|.+||+.. ..+..+...... ....+...+.+++|+ ||| .+++++ ++.|.+|+...+... .
T Consensus 256 G~~la~~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~ 331 (1045)
T 1k32_A 256 GRRILFS-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-K 331 (1045)
T ss_dssp SSCEEEE-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-E
T ss_pred CCEEEEE-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-E
Confidence 9999988 488999999944 334333310000 000123468899999 999 466665 889999999977654 4
Q ss_pred eecCcc-CeeEEEEecCCCEEEEEccCCcEE-EEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCC
Q 003467 290 HSFHKG-DVNALAAAPSHNRVFSTGSDGQVI-LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISR 367 (817)
Q Consensus 290 ~~~h~~-~v~~l~~s~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 367 (817)
+..|.. .+..++|+ ||+.|++++.++.+. +|++.++. . ..+..|...+..++|+
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-----------------~-~~l~~~~~~~~~~~~S----- 387 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-----------------A-EKFEENLGNVFAMGVD----- 387 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-----------------E-EECCCCCCSEEEEEEC-----
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-----------------c-eEecCCccceeeeEEC-----
Confidence 666777 89999999 999999988888888 88887654 2 2334777889999998
Q ss_pred CCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCe
Q 003467 368 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 447 (817)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 447 (817)
||++ .|++++.++.|++||+.+...
T Consensus 388 ----pDG~------------------------~la~~~~~~~v~~~d~~tg~~--------------------------- 412 (1045)
T 1k32_A 388 ----RNGK------------------------FAVVANDRFEIMTVDLETGKP--------------------------- 412 (1045)
T ss_dssp ----TTSS------------------------EEEEEETTSEEEEEETTTCCE---------------------------
T ss_pred ----CCCC------------------------EEEEECCCCeEEEEECCCCce---------------------------
Confidence 8887 999999999999999875320
Q ss_pred EEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-cC----------CceEE
Q 003467 448 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DH----------VKPSL 516 (817)
Q Consensus 448 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~----------~~i~l 516 (817)
..+...+...+.+++|||||++|+++ .+ +.+++
T Consensus 413 ------------------------------------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 413 ------------------------------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp ------------------------------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ------------------------------------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 11111233557788999999998875 32 37899
Q ss_pred EEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCcee-------ee--ec--------
Q 003467 517 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-------HT--FT-------- 579 (817)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~-------~~--~~-------- 579 (817)
|++.. +. . ..+..+...+..++|+|||++|++++.++...+|+....... .. +.
T Consensus 457 ~d~~~---g~-~-----~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEG---RK-I-----FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTT---TE-E-----EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCC---Cc-E-----EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 98764 22 2 345556667888999999999999998887777775432220 00 00
Q ss_pred --cC--------ccc-----ccccCCCCCCceeEEEEccCCCEEEE-------------EeCCCcEEEEECCCcceEEEE
Q 003467 580 --PC--------REE-----HDREIQPSEPPITKMFTSSDGQWLAA-------------VNCFGDVYIFNLEIQRQHWFI 631 (817)
Q Consensus 580 --~~--------~~~-----~~~~~~~~~~~i~~l~~s~dg~~la~-------------~~~dg~i~vwd~~~~~~~~~~ 631 (817)
.. ... ....++.+...+..++++|||+++++ .+....|++||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 00 000 01123446788999999999998885 123557899999998854332
Q ss_pred ecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 632 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 632 ~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
..+.+++||| |++.|++++.+ .|++||+.+++
T Consensus 608 -----~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 -----NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp -----EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred -----cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 4688999999 99999998866 79999998776
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-33 Score=294.24 Aligned_cols=286 Identities=14% Similarity=0.148 Sum_probs=241.4
Q ss_pred eeeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCC-CCCCCceEEE
Q 003467 5 RNSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGK-MGLPGGRLFS 83 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~-~~~~~~~l~s 83 (817)
.......|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+| ...|.+++|+|+++ + |++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~------l~~ 74 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLRY-KHPLLCCNFIDNTDLQ------IYV 74 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEEC-SSCEEEEEEEESSSEE------EEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeeec-CCceEEEEECCCCCcE------EEE
Confidence 34456799999999999999999999999999999999887621 123444455 78999999999998 7 999
Q ss_pred eeCCCeEEEEEC-CCCeEEEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 84 SSIDGSVSEWDL-YDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 84 ~~~d~~i~vwd~-~~~~~~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
++.||.|++||+ .+++. ..+.+ |...|.+++|+| +
T Consensus 75 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~---------------------------------------- 112 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D---------------------------------------- 112 (342)
T ss_dssp EETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T----------------------------------------
T ss_pred EcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C----------------------------------------
Confidence 999999999999 88764 77888 999999999999 5
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecC---------CCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITD---------SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 231 (817)
..+++++.|+.|++||+.+ +..+ ..+. |...|.+++|+|++ +++++.|+.|++||
T Consensus 113 ----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d 176 (342)
T 1yfq_A 113 ----------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFR 176 (342)
T ss_dssp ----------TEEEEEETTSEEEEECHHHHTTBCEEEEESCS---SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEE
T ss_pred ----------CEEEEEcCCCeEEEEcccccccccccccCCee---eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEE
Confidence 4999999999999999985 4433 4455 88999999999987 99999999999999
Q ss_pred CCC-CceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCC------eEEEEeecCcc-------
Q 003467 232 AKL-GYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHG------TLLQAHSFHKG------- 295 (817)
Q Consensus 232 ~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~------- 295 (817)
+.+ +........ ..+...+.+++|+| ++ .+++++.+|.|++|+++.. +....+..|..
T Consensus 177 ~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 177 LPLCEDDNGTIEE------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp SSCCTTCCCEEEE------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred CCccccccceeee------cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence 988 654322221 15778899999999 88 7999999999999999887 77888888865
Q ss_pred --CeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccC-CCccceeEeecccCCCCCCC
Q 003467 296 --DVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH-THDVRALTVAVPISREDPLP 372 (817)
Q Consensus 296 --~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~ 372 (817)
.|.+++|+|++++|++++.||.|++||+.+++ .+..+..| ...|.+++ .
T Consensus 251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~h~~~v~~~~-~---------- 302 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-----------------KIKNFAKFNEDSVVKIA-C---------- 302 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-----------------EEEECCCCSSSEEEEEE-E----------
T ss_pred ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-----------------HhhhhhcccCCCceEec-C----------
Confidence 99999999999999999999999999998877 67788888 99998887 3
Q ss_pred ccccccccCCCCCccccccccccCCCcEEEEecCCCe-EEEEe
Q 003467 373 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK-LFAYC 414 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~~~~ 414 (817)
++ .+|++++.||. .+.+.
T Consensus 303 ~~------------------------~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 303 SD------------------------NILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS------------------------SEEEEEEECTHHHHCSS
T ss_pred CC------------------------CeEEEEecCCccccccc
Confidence 33 49999999997 44433
No 90
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=298.79 Aligned_cols=310 Identities=13% Similarity=0.215 Sum_probs=247.3
Q ss_pred eeeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEE----c----CCCCCcEEEEEEee-cCCCC
Q 003467 6 NSSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTV----H----GDPKSRISSLVWCH-AGKMG 75 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~----~----g~~~~~V~~l~~s~-~~~~~ 75 (817)
.+.+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.......... . ..|...|.+++|+| ++.+
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 114 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM- 114 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC-
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE-
Confidence 456788999999999999 99999999999999999999876432221111 0 12478999999999 6666
Q ss_pred CCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 76 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
|++++.|+.|++||+.+++....+. +...+.++++++.+..
T Consensus 115 -----l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------------------- 155 (408)
T 4a11_B 115 -----FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTK--------------------------------- 155 (408)
T ss_dssp -----EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSS---------------------------------
T ss_pred -----EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCC---------------------------------
Confidence 9999999999999999999888887 7888999999997632
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEEECCC
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~ 234 (817)
+.++++++.+|.|++||+.++..+ ..+..|.+.|.+++|+|+++ +|++++.||.|++||+++
T Consensus 156 --------------~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 156 --------------HCLVAVGTRGPKVQLCDLKSGSCS---HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp --------------CCEEEEEESSSSEEEEESSSSCCC---EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred --------------CcEEEEEcCCCeEEEEeCCCccee---eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 148999999999999999877665 67788999999999999999 589999999999999988
Q ss_pred Cc-eEEEEEeec-------CCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-----cCeeEE
Q 003467 235 GY-EIYRITVGL-------GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-----GDVNAL 300 (817)
Q Consensus 235 g~-~~~~~~~~~-------~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l 300 (817)
+. .+..+.... ......|...|.+++|+|++ .|++++.||.|++||+.+++....+..+. ..+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE
Confidence 76 333332100 01113688899999999999 79999999999999999887765543321 222223
Q ss_pred EEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccccc
Q 003467 301 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 380 (817)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 380 (817)
.....+..+++++.|+.|++|++.++. .+..+.+|...|.+++|+ |+++
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-----------------~~~~~~~~~~~v~~~~~s---------~~~~----- 347 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYSGE-----------------QITMLKGHYKTVDCCVFQ---------SNFQ----- 347 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTTCC-----------------EEEEECCCSSCEEEEEEE---------TTTT-----
T ss_pred EecCCCceEEEEecCCEEEEEECcCCc-----------------ceeeeccCCCeEEEEEEc---------CCCC-----
Confidence 333445667778899999999998887 788889999999999998 7776
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccC
Q 003467 381 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 422 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~ 422 (817)
+|++++.||.|++|++.+.+...
T Consensus 348 -------------------~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 348 -------------------ELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp -------------------EEEEEETTSCEEEEEECC-----
T ss_pred -------------------EEEEECCCCeEEEEeCCCCCccC
Confidence 99999999999999998866443
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=282.37 Aligned_cols=285 Identities=16% Similarity=0.234 Sum_probs=246.8
Q ss_pred EEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeecc
Q 003467 50 HCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTN 129 (817)
Q Consensus 50 ~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~ 129 (817)
....++.+| .+.|.+++| |++++ |++++.||.|++||+.+++....+..|...|.+++|+|++
T Consensus 9 ~~~~~l~~h-~~~v~~~~~-~~~~~------l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 71 (313)
T 3odt_A 9 QLSATLKGH-DQDVRDVVA-VDDSK------VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK--------- 71 (313)
T ss_dssp EEEEEECCC-SSCEEEEEE-EETTE------EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT---------
T ss_pred HHHHHhhCC-CCCcEEEEe-cCCCE------EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC---------
Confidence 467888888 899999999 99987 9999999999999999999999999999999999999998
Q ss_pred CccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEE
Q 003467 130 SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSV 209 (817)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 209 (817)
+++++++.||.|++|++...........+.+|...|.++
T Consensus 72 -----------------------------------------~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 110 (313)
T 3odt_A 72 -----------------------------------------ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSL 110 (313)
T ss_dssp -----------------------------------------TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEE
T ss_pred -----------------------------------------CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEE
Confidence 599999999999999998654433347788999999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-CC-eEEEEcCCCcEEEEeCCCCeEE
Q 003467 210 TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 210 ~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~ 287 (817)
+| ++++|++++.||.|++|| .++....+. .|...+.++.+.| ++ .+++++.||.|++|| .++..
T Consensus 111 ~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~ 176 (313)
T 3odt_A 111 SF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ--------AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVI 176 (313)
T ss_dssp EE--ETTEEEEEETTSEEEEEE--TTEEEEEEE--------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEE
T ss_pred Ee--cCCEEEEEeCCCCEEEEc--CCcEEEecc--------cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceE
Confidence 99 578999999999999999 677777777 6889999999998 55 899999999999999 45677
Q ss_pred EEeec-CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccC
Q 003467 288 QAHSF-HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 366 (817)
Q Consensus 288 ~~~~~-h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 366 (817)
..+.. |...|.+++|+|++. +++++.||.|++||+.+++ .+..+..|...|.+++++
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~i~~~~~~---- 234 (313)
T 3odt_A 177 KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-----------------VLRTYEGHESFVYCIKLL---- 234 (313)
T ss_dssp EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-----------------EEEEEECCSSCEEEEEEC----
T ss_pred EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-----------------hhhhhhcCCceEEEEEEe----
Confidence 77777 899999999999998 9999999999999998877 677888999999999997
Q ss_pred CCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCC
Q 003467 367 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 446 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 446 (817)
|++ .|++++.|+.|++||+.+...
T Consensus 235 -----~~~-------------------------~l~~~~~dg~v~iwd~~~~~~-------------------------- 258 (313)
T 3odt_A 235 -----PNG-------------------------DIVSCGEDRTVRIWSKENGSL-------------------------- 258 (313)
T ss_dssp -----TTS-------------------------CEEEEETTSEEEEECTTTCCE--------------------------
T ss_pred -----cCC-------------------------CEEEEecCCEEEEEECCCCce--------------------------
Confidence 665 588999999999999876321
Q ss_pred eEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeec
Q 003467 447 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK 521 (817)
Q Consensus 447 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~ 521 (817)
+..+ ..+...+.+++++|++++++.+.++.+++|++..
T Consensus 259 ------------------------------------~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 259 ------------------------------------KQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ------------------------------------EEEE-ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred ------------------------------------eEEE-eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 0111 1223579999999999988888999999999976
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-35 Score=310.05 Aligned_cols=246 Identities=15% Similarity=0.097 Sum_probs=203.7
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC--eEEEEEeecCceEEEEeeecCCCccceeeccCccccCcc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL--KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 137 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (817)
.+.|.+++|+|++++ |++++.|+.|++||+.++ +++..+.+|...|.+++|+|++
T Consensus 11 ~~~v~~~~~s~~g~~------l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----------------- 67 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTE------FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS----------------- 67 (377)
T ss_dssp SSCCSCCEECSSSSE------EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-----------------
T ss_pred CCcEEEEEECCCCCE------EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-----------------
Confidence 568999999999988 999999999999999998 7888899999999999999998
Q ss_pred ccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCE
Q 003467 138 LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM 217 (817)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 217 (817)
++|++++.||.|++||+.++........+.+|...|.+++|+|++++
T Consensus 68 ---------------------------------~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (377)
T 3dwl_C 68 ---------------------------------NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK 114 (377)
T ss_dssp ---------------------------------CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSC
T ss_pred ---------------------------------CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCE
Confidence 48999999999999999876523333677889999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCce---EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC-----------
Q 003467 218 LYSGSSDGYIRSWDAKLGYE---IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR----------- 282 (817)
Q Consensus 218 l~s~~~dg~i~vwd~~~g~~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~----------- 282 (817)
|++++.|+.|++||+.+++. ...+.. .|...|.+++|+|++ .|++++.||.|++||+.
T Consensus 115 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 187 (377)
T 3dwl_C 115 FAVGSGARVISVCYFEQENDWWVSKHLKR-------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS 187 (377)
T ss_dssp CEEEESSSCEEECCC-----CCCCEEECS-------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC
T ss_pred EEEEecCCeEEEEEECCcccceeeeEeec-------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc
Confidence 99999999999999998873 555541 288999999999999 79999999999999985
Q ss_pred -------CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 283 -------HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 283 -------~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
.++++..+ .|...|.+++|+|++++|++++.||.|++||+.++.. ....+..+..|...
T Consensus 188 ~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~ 253 (377)
T 3dwl_C 188 VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ-------------PPRALITVKLSQLP 253 (377)
T ss_dssp SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS-------------CEEECCCEECSSSC
T ss_pred ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC-------------cceeeEeecCCCCc
Confidence 46677777 8999999999999999999999999999999998762 01126678899999
Q ss_pred cceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCC
Q 003467 356 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN 416 (817)
Q Consensus 356 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~ 416 (817)
|.+++|+ |+++ +|++++.++.+ +|+..
T Consensus 254 v~~~~~s---------~~~~------------------------~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 254 LRSLLWA---------NESA------------------------IVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEEEE---------ETTE------------------------EEEEESSSSEE-EECCC
T ss_pred eEEEEEc---------CCCC------------------------EEEEEcCCcEE-EEEeC
Confidence 9999998 7776 88888766666 66654
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-33 Score=294.66 Aligned_cols=284 Identities=13% Similarity=0.143 Sum_probs=206.6
Q ss_pred CEEEEEeCCC-------cEEEEEecCCCce-------eEeeccCCccceEEEEEEccCCCEEEEe-----------eCCC
Q 003467 171 RRVALACDDG-------CVRIYRITDSDEL-------IYHRSLPRVSGRVLSVTWSADGNMLYSG-----------SSDG 225 (817)
Q Consensus 171 ~~l~~~~~dg-------~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~v~~s~dg~~l~s~-----------~~dg 225 (817)
++|++|+.+. .|++|++...... .....+.+|...|.+++++ ++.+++| +.|+
T Consensus 27 ~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~ 104 (365)
T 4h5i_A 27 TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNK 104 (365)
T ss_dssp EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCC
T ss_pred cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCC
Confidence 4788887543 5999999744321 1123577888889888765 5566665 4577
Q ss_pred cEEEEECCCCceEEEEEeec-CCCCCCCceeEEEeEEecCC-eEE--EEcCCCcEEEEeCCCCeEEEEeecCccCeeEEE
Q 003467 226 YIRSWDAKLGYEIYRITVGL-GGLGSGPELCIWSLLSLRCG-TLV--SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 301 (817)
Q Consensus 226 ~i~vwd~~~g~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~-~l~--s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 301 (817)
.+++|++.++.......... ......++..+.+++|+||| .++ +++.|++|++||+++++++..+. |...|.+++
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~ 183 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLH 183 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEE
Confidence 89999987655433332211 11223456678999999999 443 45578999999999999998886 778899999
Q ss_pred EecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccC
Q 003467 302 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRG 381 (817)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (817)
|+|||+++++++.+ .+.+|+..++.. ........|...|++++|+ |+++
T Consensus 184 fspdg~~l~s~s~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~v~~v~fs---------pdg~------ 232 (365)
T 4h5i_A 184 FSTDGKVVAYITGS-SLEVISTVTGSC---------------IARKTDFDKNWSLSKINFI---------ADDT------ 232 (365)
T ss_dssp ECTTSSEEEEECSS-CEEEEETTTCCE---------------EEEECCCCTTEEEEEEEEE---------ETTE------
T ss_pred EccCCceEEeccce-eEEEEEeccCcc---------------eeeeecCCCCCCEEEEEEc---------CCCC------
Confidence 99999999999855 566776665541 0223456677778888887 6665
Q ss_pred CCCCccccccccccCCCcEEEEecCCC----eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeE
Q 003467 382 REKPIDFSYHKWAHLGVPMLISAGDDT----KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL 457 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~s~~~dg----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i 457 (817)
.+++++.|+ .++.|++....
T Consensus 233 ------------------~l~~~s~d~~~~~~i~~~~~~~~~-------------------------------------- 256 (365)
T 4h5i_A 233 ------------------VLIAASLKKGKGIVLTKISIKSGN-------------------------------------- 256 (365)
T ss_dssp ------------------EEEEEEESSSCCEEEEEEEEETTE--------------------------------------
T ss_pred ------------------EEEEEecCCcceeEEeecccccce--------------------------------------
Confidence 777776665 33344332100
Q ss_pred EEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCC
Q 003467 458 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP 537 (817)
Q Consensus 458 ~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 537 (817)
........+.
T Consensus 257 ----------------------------------------------------------------------~~~~~~~~~~ 266 (365)
T 4h5i_A 257 ----------------------------------------------------------------------TSVLRSKQVT 266 (365)
T ss_dssp ----------------------------------------------------------------------EEEEEEEEEE
T ss_pred ----------------------------------------------------------------------ecceeeeeec
Confidence 0001112344
Q ss_pred ccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeee-ccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCc
Q 003467 538 RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF-TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD 616 (817)
Q Consensus 538 ~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~ 616 (817)
.|...|++++|||||++||+|+.|++|+|||+.+++++.++ .+ |...|++++|||||++||+++.|++
T Consensus 267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g-----------H~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA-----------HSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS-----------SSSCEEEEEECTTSCEEEEEETTSE
T ss_pred CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc-----------ccCCEEEEEECCCCCEEEEEeCCCe
Confidence 55668999999999999999999999999999999999885 56 9999999999999999999999999
Q ss_pred EEEEECCCc
Q 003467 617 VYIFNLEIQ 625 (817)
Q Consensus 617 i~vwd~~~~ 625 (817)
|+||++...
T Consensus 336 vrvw~ip~~ 344 (365)
T 4h5i_A 336 IHIIKLPLN 344 (365)
T ss_dssp EEEEECCTT
T ss_pred EEEEEcCCC
Confidence 999999643
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=294.13 Aligned_cols=300 Identities=12% Similarity=0.110 Sum_probs=235.1
Q ss_pred eccCCccceEEEEEEccCCCEEE-EeeC---CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC---C-eEE
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLY-SGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G-TLV 268 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~-s~~~---dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~-~l~ 268 (817)
..+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++....... +|...|.+++|+|+ + .|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTTTCCEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCCCceEE
Confidence 45678999999999999997555 5555 89999999999887655543 47889999999998 4 799
Q ss_pred EEcCCCcEEEEeCCCCe-EEEEeecCccCeeEEE------EecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccc
Q 003467 269 SADSTGSVQFWDSRHGT-LLQAHSFHKGDVNALA------AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIK 341 (817)
Q Consensus 269 s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (817)
+++.||.|++||+.+++ .+..+.+|...|.+++ |+|++++|++++.||.|++||+..+..
T Consensus 85 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------------- 151 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------------- 151 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-------------
T ss_pred EecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-------------
Confidence 99999999999999988 8899999999999995 578999999999999999999987652
Q ss_pred eEEEeeccccC----CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 342 KWIYVGSVRAH----THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 342 ~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+..| ...+.++++.+.++ |+++ +|++++.|+.|++||+.+
T Consensus 152 ---~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~------------------------~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 152 ---PVANMEPVQGENKRDCWTVAFGNAYN-----QEER------------------------VVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp ---CSEEECCCTTSCCCCEEEEEEECCCC------CCC------------------------EEEEEETTSEEEEEETTT
T ss_pred ---cceeccccCCCCCCceEEEEEEeccC-----CCCC------------------------EEEEEccCCeEEEEECcc
Confidence 12233333 33788888653333 5664 999999999999999875
Q ss_pred ccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEE
Q 003467 418 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS 497 (817)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 497 (817)
... .....+...+.++
T Consensus 200 ~~~----------------------------------------------------------------~~~~~~~~~v~~~ 215 (357)
T 3i2n_A 200 MAL----------------------------------------------------------------RWETNIKNGVCSL 215 (357)
T ss_dssp TEE----------------------------------------------------------------EEEEECSSCEEEE
T ss_pred Cce----------------------------------------------------------------eeecCCCCceEEE
Confidence 320 0011223678999
Q ss_pred EecC---CCcEEEEE-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCC-EEEEEecCCcEEEEEccCC
Q 003467 498 TISN---SGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSS 572 (817)
Q Consensus 498 ~~s~---~g~~la~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~-~l~~~~~dg~i~v~d~~~~ 572 (817)
+|+| ++.+++++ .++.+++|++..... ... +....+..|...+.+++|+|+++ +|++++.||.|++||+.++
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHP-TKG--FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEEEET-TTE--EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-ccc--eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 9999 88888885 689999999987222 221 21123346777999999999999 8999999999999999754
Q ss_pred c-------------------eeeeeccCcccccccCCCCCCceeEEEEccCCCEEE-EEeCCCcEEEEECCCcc
Q 003467 573 E-------------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCFGDVYIFNLEIQR 626 (817)
Q Consensus 573 ~-------------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la-~~~~dg~i~vwd~~~~~ 626 (817)
. .+.++.. |...|++++|+|+|++|+ +++.||.|+|||+.+.+
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTL-----------STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEEC-----------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccccCCCCccccccccceeecccc-----------CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3 3445555 899999999999999998 79999999999998765
No 95
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-33 Score=285.37 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=211.4
Q ss_pred EEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC--CeEEEEEeecCceEEEEeeecC--CCccceeecc
Q 003467 54 TVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPS--NSSLMHAVTN 129 (817)
Q Consensus 54 ~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~ 129 (817)
.+.+| ...|.+++|+|+|++ ||+++.|++|++||+.+ ++++.++.+|.++|++++|+++ +
T Consensus 4 ~~~~h-~~~V~~~~~s~~g~~------las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g--------- 67 (297)
T 2pm7_B 4 IANAH-NEMIHDAVMDYYGKR------MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--------- 67 (297)
T ss_dssp ECCSC-SSCEEEEEECTTSSE------EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC---------
T ss_pred eccCC-cCceEEEEECCCCCE------EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC---------
Confidence 45566 889999999999988 99999999999999974 4678899999999999999864 4
Q ss_pred CccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEE
Q 003467 130 SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSV 209 (817)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 209 (817)
++|++|+.|++|+|||+.++.. .....+.+|...|.++
T Consensus 68 -----------------------------------------~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v 105 (297)
T 2pm7_B 68 -----------------------------------------TILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSV 105 (297)
T ss_dssp -----------------------------------------SEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEE
T ss_pred -----------------------------------------CEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEE
Confidence 4999999999999999986531 1125677899999999
Q ss_pred EEccC--CCEEEEeeCCCcEEEEECCCCce--EEEEEeecCCCCCCCceeEEEeEEecC-------------C-eEEEEc
Q 003467 210 TWSAD--GNMLYSGSSDGYIRSWDAKLGYE--IYRITVGLGGLGSGPELCIWSLLSLRC-------------G-TLVSAD 271 (817)
Q Consensus 210 ~~s~d--g~~l~s~~~dg~i~vwd~~~g~~--~~~~~~~~~~~~~~~~~~v~~v~~~~~-------------~-~l~s~~ 271 (817)
+|+|+ +.+|++++.|+.|++||++++.. ...+. +|...|.+++|+|+ + .|++|+
T Consensus 106 ~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID--------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE--------CCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred EeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee--------cccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 99998 89999999999999999987642 23343 68889999999997 3 799999
Q ss_pred CCCcEEEEeCCCCe----EEEEeecCccCeeEEEEecCC---CEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEE
Q 003467 272 STGSVQFWDSRHGT----LLQAHSFHKGDVNALAAAPSH---NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 344 (817)
Q Consensus 272 ~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 344 (817)
.|++|++||+++++ ....+.+|...|.+++|+|++ ++|++++.|++|++|++..... .|.
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~-------------~~~ 244 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG-------------PWK 244 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-------------CCE
T ss_pred CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-------------ccc
Confidence 99999999998765 667889999999999999985 8899999999999999976431 111
Q ss_pred -EeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 345 -YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 345 -~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.......|...|.+++|+ |+++ +|++++.|+.|++|+...
T Consensus 245 ~~~~~~~~~~~~v~~~~~s---------~~g~------------------------~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWS---------LSGN------------------------VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEESSSSCCSSCEEEEEEC---------SSSC------------------------CEEEEETTSCEEEEEECT
T ss_pred eeeeecccCCCcEEEEEEC---------CCCC------------------------EEEEEcCCCcEEEEEECC
Confidence 111225678889999998 8876 999999999999999763
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=295.07 Aligned_cols=258 Identities=18% Similarity=0.225 Sum_probs=218.8
Q ss_pred eeeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec--CCCCCCCceEEE
Q 003467 6 NSSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA--GKMGLPGGRLFS 83 (817)
Q Consensus 6 ~r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~--~~~~~~~~~l~s 83 (817)
.+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.... ......+.+| ...|.+++|+++ +++ |++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h-~~~v~~~~~~~~~~~~~------l~s 74 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGH-EGPVWRVDWAHPKFGTI------LAS 74 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCC-SSCEEEEEECCGGGCSE------EEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCC-CCcEEEEEeCCCCCCCE------EEE
Confidence 35678999999999999999999999999999999998433 2356677777 799999999987 776 999
Q ss_pred eeCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecC--CCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 84 SSIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPS--NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
++.||.|++||+.+++ .+..+..|...|.+++|+|+ +
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------------------------- 115 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG--------------------------------------- 115 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC---------------------------------------
T ss_pred eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC---------------------------------------
Confidence 9999999999999997 77888889999999999998 5
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-------------CCCEEEEeeCCCc
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-------------DGNMLYSGSSDGY 226 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------dg~~l~s~~~dg~ 226 (817)
.++++++.||.|++||+.+..... ...+..|...|.+++|+| ++.+|++++.||.
T Consensus 116 -----------~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 116 -----------PLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp -----------SEEEEEETTSEEEEEECCTTSCCC-EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred -----------CEEEEecCCCcEEEEecCCCCcee-eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 499999999999999998653322 245678999999999999 6999999999999
Q ss_pred EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC---C-eEEEEcCCCcEEEEeCCCCe---EEEE--eecCccCe
Q 003467 227 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G-TLVSADSTGSVQFWDSRHGT---LLQA--HSFHKGDV 297 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~-~l~s~~~dg~i~iwd~~~~~---~~~~--~~~h~~~v 297 (817)
|++||++++.....+.... ..|...|.+++|+|+ + .|++++.||.|++||+.++. .... ...|...|
T Consensus 184 i~i~d~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVLESTL----EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp EEEEEEETTTTEEEEEEEE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEecCCCcceeeEEEE----ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 9999998876443332111 168899999999999 7 79999999999999999863 2222 33488899
Q ss_pred eEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 298 NALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 298 ~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.+++|+|++++|++++.||.|++|++....
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999999999999999998643
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-33 Score=295.40 Aligned_cols=286 Identities=18% Similarity=0.194 Sum_probs=227.8
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccC-CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+++++.||.|++||+.++.... .+. .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 173 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-------- 173 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------
T ss_pred CEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--------
Confidence 67788899999999998776552 333 388999999999999999999999999999999999988887
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCC-CCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
.|...|.+++|. ...+++++.||.|++||++ .+..+..+..|...|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 174 ~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-- 250 (401)
T 4aez_A 174 GHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-- 250 (401)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--
T ss_pred CCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--
Confidence 689999999994 3489999999999999999 567788899999999999999999999999999999999998876
Q ss_pred CCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec--CC
Q 003467 330 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--DD 407 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d 407 (817)
.+..+..|...|.+++++ |++. .++++++ .|
T Consensus 251 ---------------~~~~~~~~~~~v~~~~~~---------p~~~-----------------------~ll~~~~gs~d 283 (401)
T 4aez_A 251 ---------------PKFTKTNHNAAVKAVAWC---------PWQS-----------------------NLLATGGGTMD 283 (401)
T ss_dssp ---------------EEEEECCCSSCCCEEEEC---------TTST-----------------------TEEEEECCTTT
T ss_pred ---------------ccEEecCCcceEEEEEEC---------CCCC-----------------------CEEEEecCCCC
Confidence 677788899999999997 6554 4777765 79
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
+.|++||+.+....
T Consensus 284 ~~i~i~d~~~~~~~------------------------------------------------------------------ 297 (401)
T 4aez_A 284 KQIHFWNAATGARV------------------------------------------------------------------ 297 (401)
T ss_dssp CEEEEEETTTCCEE------------------------------------------------------------------
T ss_pred CEEEEEECCCCCEE------------------------------------------------------------------
Confidence 99999998642200
Q ss_pred ecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe--cCCcEE
Q 003467 488 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--HDRRIY 565 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~--~dg~i~ 565 (817)
.. + .+...+.+++|+|++++|++++ .||.|+
T Consensus 298 -----------------------------~~------------~------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~ 330 (401)
T 4aez_A 298 -----------------------------NT------------V------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330 (401)
T ss_dssp -----------------------------EE------------E------ECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred -----------------------------EE------------E------eCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence 00 0 0112588999999999999954 899999
Q ss_pred EEEccCCceeee--eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEE
Q 003467 566 VVDVSSSELLHT--FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA 642 (817)
Q Consensus 566 v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l 642 (817)
+||+.+++.... +.+ |...|++++|+|||++|++++.||.|++|++.+++........+.....++
T Consensus 331 v~~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i 398 (401)
T 4aez_A 331 IWSYSSSGLTKQVDIPA-----------HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSI 398 (401)
T ss_dssp EEEEETTEEEEEEEEEC-----------CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------------------
T ss_pred EEecCCccceeEEEecC-----------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCccce
Confidence 999998765544 455 899999999999999999999999999999999886554433333333333
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-35 Score=305.54 Aligned_cols=319 Identities=10% Similarity=0.098 Sum_probs=244.4
Q ss_pred ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 202 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
-...|.+++|+|||+++|+++.|++|+ |...++.+ . +|...|++++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~--------gh~~~v~~V~FsPdg------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N--------CNSKNLFHVKEFPLE------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S--------SBGGGTEEEEEECCC------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---c--------CCCccEEEEEECCCC------CcceEEEEeC
Confidence 357899999999999999999999999 76666544 2 799999999999998 5565556654
Q ss_pred CCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC-----cc
Q 003467 282 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-----DV 356 (817)
Q Consensus 282 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v 356 (817)
+.. .+..+ .|...|.+++|||||++|++++.||.|++|+..+ ++..+. |.. .|
T Consensus 75 ~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------------~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 75 QQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------------MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp CSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------------EEEECC-CSSCSTTTCE
T ss_pred CCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------------eeeecc-CCCccccccE
Confidence 422 22222 4588899999999999999999999999999533 344455 554 59
Q ss_pred ceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCcee
Q 003467 357 RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 436 (817)
Q Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (817)
.+++|+ |||+ +|++|+.||+|++|++.......+.
T Consensus 133 ~svafS---------PDG~------------------------~LAsgs~DGtVkIWd~~~~~l~~~~------------ 167 (588)
T 2j04_A 133 HCFEWN---------PIES------------------------SIVVGNEDGELQFFSIRKNSENTPE------------ 167 (588)
T ss_dssp EEEEEC---------SSSS------------------------CEEEEETTSEEEEEECCCCTTTCCC------------
T ss_pred EEEEEc---------CCCC------------------------EEEEEcCCCEEEEEECCCCcccccc------------
Confidence 999998 8987 9999999999999999763210000
Q ss_pred eecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee---ecCCCCeEEEEecCCCcEEEEEcCCc
Q 003467 437 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK---SKASRKIICSTISNSGMLFAYSDHVK 513 (817)
Q Consensus 437 ~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~i~~~~~s~~g~~la~~~~~~ 513 (817)
-+ .+..+. .++...|.+++|+||| +++.+.|+.
T Consensus 168 -------------------~i------------------------~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~t 203 (588)
T 2j04_A 168 -------------------FY------------------------FESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNS 203 (588)
T ss_dssp -------------------CE------------------------EEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCC
T ss_pred -------------------ce------------------------eeeeeecccccccccEEEEEEcCCc-EEEEeCCCe
Confidence 00 011111 2234789999999999 777789999
Q ss_pred eEEEEeecCCCCCceEEEeeecC-CccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 003467 514 PSLFELKKGKVGQGEWIINKRQL-PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 592 (817)
Q Consensus 514 i~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 592 (817)
+++|++..... ...+ ..+ ..|...|.+++|+ |++||+++ +++|++||+.+++......+ |
T Consensus 204 VrlWd~~~~~~-~~~~----~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g-----------h 264 (588)
T 2j04_A 204 VFSMTVSASSH-QPVS----RMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG-----------S 264 (588)
T ss_dssp EEEECCCSSSS-CCCE----EEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS-----------C
T ss_pred EEEEECCCCcc-ccce----eeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC-----------C
Confidence 99999876221 0011 123 3566789999999 68999887 69999999997776443335 8
Q ss_pred CCceeEEEE--ccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 593 EPPITKMFT--SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 593 ~~~i~~l~~--s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
...|..++| |||++.|++++.||+ ++|..+ .++|+| |+..++.+ |+++++|+...+.
T Consensus 265 ~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-----------------~~~~sp-d~~l~a~~--d~~v~lW~~~g~~ 323 (588)
T 2j04_A 265 LENFHIIPLNHEKESTILLMSNKTSY-KVLLED-----------------ELHVTA-DNIIAPYL--EKKFKKWSTIWNE 323 (588)
T ss_dssp CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-----------------SEEEEC-CCSSHHHH--HHHHHHTTTTTTS
T ss_pred CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------------cEEECC-CceEEEEc--CCEEEEEECCCCc
Confidence 999999999 999999999999999 999987 156999 88877664 9999999987665
Q ss_pred cccchhcccCccCcchhcCCCceeEEEECCCCC
Q 003467 671 LGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS 703 (817)
Q Consensus 671 ~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~ 703 (817)
+ ..+.+ ...|.+++|||||.
T Consensus 324 l------------~~~~~-~~~I~~va~SPdG~ 343 (588)
T 2j04_A 324 F------------NNYET-TLVIHGISLSPDGY 343 (588)
T ss_dssp S------------SSSCC-EEEEEEEEECTTSS
T ss_pred e------------eeecc-ceEEEEEEECCCCC
Confidence 3 23444 77899999999864
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-32 Score=291.18 Aligned_cols=284 Identities=17% Similarity=0.205 Sum_probs=237.1
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~ 284 (817)
+..|+|+++ +.|++|. |++|+|||+.+|+....+... +|...|++++|+|+| .|++|+.||.|++||++++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~ 179 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence 567999976 5777765 899999999999988887742 577889999999999 7999999999999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
+.+..+.+|...+.+++++ +..|++|+.|+.+++|+...... .+..+.+|...+..+.+.
T Consensus 180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~----------------~~~~~~~h~~~~~~~~~~-- 239 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH----------------HVATLSGHSQEVCGLRWA-- 239 (420)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC----------------EEEEEECCSSCEEEEEEC--
T ss_pred cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce----------------eeEEecccccceeeeeec--
Confidence 9999999999999988875 67899999999999999876542 567788999999999987
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
|+++ ++++++.|+.+++|+........
T Consensus 240 -------~~g~------------------------~l~s~~~D~~v~i~~~~~~~~~~---------------------- 266 (420)
T 4gga_A 240 -------PDGR------------------------HLASGGNDNLVNVWPSAPGEGGW---------------------- 266 (420)
T ss_dssp -------TTSS------------------------EEEEEETTSCEEEEESSCCSSCS----------------------
T ss_pred -------CCCC------------------------eeeeeeccccceEEeeccccccc----------------------
Confidence 7775 99999999999999886532100
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCC
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV 524 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~ 524 (817)
T Consensus 267 -------------------------------------------------------------------------------- 266 (420)
T 4gga_A 267 -------------------------------------------------------------------------------- 266 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecCCccccceeEEEEecCCC-EEEEE--ecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEE
Q 003467 525 GQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIA--GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 601 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~fspd~~-~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 601 (817)
..+ .....+...|.+++|+|++. .++++ +.|++|++||+.+++.+..+.. ...+.++.|
T Consensus 267 -~~~-----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------------~~~v~~~~~ 328 (420)
T 4gga_A 267 -VPL-----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------HSQVCSILW 328 (420)
T ss_dssp -CCS-----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC------------SSCEEEEEE
T ss_pred -eee-----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc------------ccceeeeee
Confidence 000 11223445788899999655 44443 4799999999999999998884 567999999
Q ss_pred ccCCCEEEEEe--CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 602 SSDGQWLAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 602 s~dg~~la~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
+|+++.|++++ .||.|+|||+.+++....+. .|...|++++|+| |+++||+++.|++|++||+....
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999998876 78999999999999888775 5778999999999 99999999999999999997654
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=286.83 Aligned_cols=290 Identities=13% Similarity=0.125 Sum_probs=238.2
Q ss_pred eeeeeeccCCCceEEEEECCC---CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCce
Q 003467 4 YRNSSIDWKPSPVVALATSAD---DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGR 80 (817)
Q Consensus 4 hr~r~~~~h~~~I~~la~spd---g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~ 80 (817)
...+.+..|.+.|++++|+|+ |++||+|+.||.|+|||+.+... .....+.+| ...|.+++|+|++++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~h-~~~v~~~~~~~~~~~------ 100 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--TIPKAQQMH-TGPVLDVCWSDDGSK------ 100 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--EEEEEEEEC-SSCEEEEEECTTSSE------
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--eeEEEeccc-cCCEEEEEECcCCCE------
Confidence 355678999999999999999 69999999999999999987321 133667776 789999999999988
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEee--ecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAV--APSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
|++++.||.|++||+.+++.+. +..|...|.+++| ++++
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-------------------------------------- 141 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-------------------------------------- 141 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC--------------------------------------
T ss_pred EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC--------------------------------------
Confidence 9999999999999999998776 5669999999999 6666
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
.+|++++.||.|++||+.++..+ ..+..|. .+.++.+.+ ..+++++.++.+++|++......
T Consensus 142 ------------~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 203 (368)
T 3mmy_A 142 ------------SCVMTGSWDKTLKFWDTRSSNPM---MVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSE 203 (368)
T ss_dssp ------------EEEEEEETTSEEEEECSSCSSCS---EEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEE
T ss_pred ------------CEEEEccCCCcEEEEECCCCcEE---EEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccch
Confidence 48999999999999999877665 4444443 666777764 58899999999999999877655
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-----eEEEEcCCCcEEEEeCCCC---eEEEEeecCcc------------Cee
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG---TLLQAHSFHKG------------DVN 298 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~ 298 (817)
...... .....+.++.+.++. .+++++.||.|++||+... ..+..+..|.. .|.
T Consensus 204 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 204 FRRIES------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp EEECCC------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEE
T ss_pred hhhccc------cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceE
Confidence 443321 233444555555444 2999999999999999987 56778888876 799
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 378 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 378 (817)
+++|+|++++|++++.||.|++||+.++. .+..+..|...|.+++|+ |+++
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~v~~~~~s---------~~g~--- 328 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKDART-----------------KLKTSEQLDQPISACCFN---------HNGN--- 328 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTE-----------------EEEECCCCSSCEEEEEEC---------TTSS---
T ss_pred EEEEecCCCEEEEEccCCeEEEEECCCCc-----------------EEEEecCCCCCceEEEEC---------CCCC---
Confidence 99999999999999999999999999877 778889999999999998 8886
Q ss_pred ccCCCCCccccccccccCCCcEEEEecCCCeEEEEeC
Q 003467 379 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~ 415 (817)
+|++++.|+..+.|+.
T Consensus 329 ---------------------~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 329 ---------------------IFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---------------------CEEEEECCCSTTCGGG
T ss_pred ---------------------eEEEEecccccccccc
Confidence 9999999885555443
No 101
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.1e-33 Score=284.15 Aligned_cols=255 Identities=20% Similarity=0.184 Sum_probs=206.9
Q ss_pred EEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecC--CCccceeecc
Q 003467 54 TVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPS--NSSLMHAVTN 129 (817)
Q Consensus 54 ~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~ 129 (817)
.+.+| .+.|.+++|+|+|++ |++++.|++|++||+.++. ++..+.+|.+.|++++|+++ +
T Consensus 8 ~~~~H-~~~V~~v~~s~~g~~------lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~--------- 71 (316)
T 3bg1_A 8 VDTSH-EDMIHDAQMDYYGTR------LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG--------- 71 (316)
T ss_dssp -------CCEEEEEECGGGCE------EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS---------
T ss_pred ecccc-cCeEEEeeEcCCCCE------EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC---------
Confidence 44566 899999999999988 9999999999999998875 46788999999999999863 4
Q ss_pred CccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEE
Q 003467 130 SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSV 209 (817)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 209 (817)
++|++|+.|+.|++||+.++.. .....+.+|...|.++
T Consensus 72 -----------------------------------------~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v 109 (316)
T 3bg1_A 72 -----------------------------------------NILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSV 109 (316)
T ss_dssp -----------------------------------------SCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEE
T ss_pred -----------------------------------------CEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEE
Confidence 4899999999999999986532 2235678999999999
Q ss_pred EEccC--CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC-----------------C-eEEE
Q 003467 210 TWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-----------------G-TLVS 269 (817)
Q Consensus 210 ~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~-~l~s 269 (817)
+|+|+ +.+|++|+.|++|++||+.++....... ....|...|.+++|+|+ + .|++
T Consensus 110 ~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 110 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK-----INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp EECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC-----BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred EECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee-----eeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 99998 7899999999999999998764322111 11267888999999987 2 7999
Q ss_pred EcCCCcEEEEeCCCC---eEEEEeecCccCeeEEEEecCC----CEEEEEccCCcEEEEEeecccCCCCCCCCCccccce
Q 003467 270 ADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPSH----NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK 342 (817)
Q Consensus 270 ~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (817)
++.|+.|++||++.+ +++..+.+|...|.+++|+|++ ++|++++.|++|++|++.......
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------ 252 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------ 252 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------
Confidence 999999999999754 5678889999999999999986 889999999999999987632100
Q ss_pred EEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 343 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 343 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
| ....+..|...|.+++|+ |+++ +|++++.|+.|++|+...
T Consensus 253 ~-~~~~~~~~~~~v~~v~~s---------p~g~------------------------~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 253 W-SPKLLHKFNDVVWHVSWS---------ITAN------------------------ILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp C-BCCEEEECSSCEEEEEEC---------TTTC------------------------CEEEEESSSCEEEEEECT
T ss_pred h-hhhhhhcCCCcEEEEEEc---------CCCC------------------------EEEEEcCCCeEEEEEECC
Confidence 0 112345678899999998 8876 999999999999999753
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.6e-31 Score=270.06 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=231.5
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG 284 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~ 284 (817)
..+|+||+++ +|++| .|++|+|||+.+|+.+..+... +|...|.+++|+|++ .|++|+.||+|++||++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 4579999886 66665 5899999999999999888743 678899999999999 7999999999999999999
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 364 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 364 (817)
+.+..+.+|...+.++.+ ++..+++++.++.+++|+...... .+..+.+|...+..+.+.
T Consensus 100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-- 159 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH----------------HVATLSGHSQEVCGLRWA-- 159 (318)
T ss_dssp EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----------------EEEEEECCSSCEEEEEEC--
T ss_pred eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCce----------------eEEEEcCccCceEEEEEc--
Confidence 999999999988877655 567899999999999999877652 567788999999999987
Q ss_pred cCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeec
Q 003467 365 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 444 (817)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 444 (817)
++++ +|++++.|+.|++||+.+.+....
T Consensus 160 -------~~~~------------------------~l~s~~~d~~i~iwd~~~~~~~~~--------------------- 187 (318)
T 4ggc_A 160 -------PDGR------------------------HLASGGNDNLVNVWPSAPGEGGWV--------------------- 187 (318)
T ss_dssp -------TTSS------------------------EEEEEETTSCEEEEESSCBTTBSC---------------------
T ss_pred -------CCCC------------------------EEEEEecCcceeEEECCCCccccc---------------------
Confidence 6665 999999999999999875331100
Q ss_pred CCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCC
Q 003467 445 HTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKV 524 (817)
Q Consensus 445 ~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~ 524 (817)
T Consensus 188 -------------------------------------------------------------------------------- 187 (318)
T 4ggc_A 188 -------------------------------------------------------------------------------- 187 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecCCccccceeEEEEecCCCEE---EEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEE
Q 003467 525 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQL---IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT 601 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l---~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 601 (817)
.. .....+...+.+++++|++..+ ++++.+++|++||........... +...+..++|
T Consensus 188 --~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~------------~~~~v~~~~~ 248 (318)
T 4ggc_A 188 --PL-----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------------AHSQVCSILW 248 (318)
T ss_dssp --CS-----EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE------------CSSCEEEEEE
T ss_pred --ce-----eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc------------ceeeeeeeee
Confidence 00 0011222356777777766543 345678999999998887776665 6788999999
Q ss_pred ccCCCEEEEEe--CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 602 SSDGQWLAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 602 s~dg~~la~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
+|+++.+++++ .|+.|+|||+.+++....+. .|...|++++|+| ++++||+++.|++|++||+...
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSP-DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence 99999988765 78999999999999888775 4778999999999 9999999999999999999654
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=290.41 Aligned_cols=311 Identities=11% Similarity=0.131 Sum_probs=230.2
Q ss_pred CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc-----------eEEEEEeecCCCCCCCc------------eeEE
Q 003467 201 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY-----------EIYRITVGLGGLGSGPE------------LCIW 257 (817)
Q Consensus 201 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~-----------~~~~~~~~~~~~~~~~~------------~~v~ 257 (817)
.+.+.|.+++|+|+|++|++|+.||.|++||+.+++ ....+. +|. ..|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--------SHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--------CCCCEEEGGGTEEECCCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--------cccccccccccccccCceE
Confidence 467899999999999999999999999999998877 355555 576 7899
Q ss_pred EeEEecCC---eEEEEcCCCcEEEEeCCCCeEE---------------------------------------EE-eecCc
Q 003467 258 SLLSLRCG---TLVSADSTGSVQFWDSRHGTLL---------------------------------------QA-HSFHK 294 (817)
Q Consensus 258 ~v~~~~~~---~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~h~ 294 (817)
+++|+|++ .|++++.||.|++||+.++... .. ..+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999986 6999999999999999865432 12 36799
Q ss_pred cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEee-------ccccCCCccceeEeecccCC
Q 003467 295 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-------SVRAHTHDVRALTVAVPISR 367 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~ 367 (817)
..|.+++|+|++++|+++ .|+.|++||+..... .+. .+..|...|.+++|+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~v~~~~~~----- 235 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDR----------------SFNIVDIKPANMEELTEVITAAEFH----- 235 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE----------------EEEEEECCCSSGGGCCCCEEEEEEC-----
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc----------------eeeeeecccccccccCcceEEEEEC-----
Confidence 999999999999999998 799999999984331 222 467899999999998
Q ss_pred CCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCe
Q 003467 368 EDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS 447 (817)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 447 (817)
|++. .+|++|+.|+.|++||+.+.......
T Consensus 236 ----p~~~-----------------------~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------- 265 (447)
T 3dw8_B 236 ----PNSC-----------------------NTFVYSSSKGTIRLCDMRASALCDRH----------------------- 265 (447)
T ss_dssp ----SSCT-----------------------TEEEEEETTSCEEEEETTTCSSSCTT-----------------------
T ss_pred ----CCCC-----------------------cEEEEEeCCCeEEEEECcCCccccce-----------------------
Confidence 7761 39999999999999999764311000
Q ss_pred EEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCc
Q 003467 448 LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQG 527 (817)
Q Consensus 448 ~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~ 527 (817)
+. .+.... ....
T Consensus 266 -----------------------------------~~-------------------------------~~~~~~--~~~~ 277 (447)
T 3dw8_B 266 -----------------------------------SK-------------------------------LFEEPE--DPSN 277 (447)
T ss_dssp -----------------------------------CE-------------------------------EECCC-------
T ss_pred -----------------------------------ee-------------------------------EeccCC--Cccc
Confidence 00 000000 0000
Q ss_pred eEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC-CceeeeeccCccccccc----CCCCCCceeEEEEc
Q 003467 528 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELLHTFTPCREEHDRE----IQPSEPPITKMFTS 602 (817)
Q Consensus 528 ~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~s 602 (817)
...+..+...|.+++|+|++++|++++. +.|++||+.+ ++.+.++..+....... .......+..++|+
T Consensus 278 -----~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s 351 (447)
T 3dw8_B 278 -----RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred -----cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence 0112345558999999999999999998 9999999987 88888888731100000 00000013359999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcceEEEEec-------------------------------CCCCCeEEEEecCCCCCe
Q 003467 603 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISR-------------------------------LEGASVTAAGFPPQNNNV 651 (817)
Q Consensus 603 ~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------~~~~~i~~l~~sp~d~~~ 651 (817)
|+|++|++++.||.|++||+.+++....... .....|.+++|+| ++++
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~ 430 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENI 430 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECC-CCCE
Confidence 9999999999999999999999876532111 1124688999999 9999
Q ss_pred EEEEecCCeEEEEEcC
Q 003467 652 LIITTSSNQVYVFDVE 667 (817)
Q Consensus 652 l~~~~~d~~i~vwd~~ 667 (817)
||+++.++ +++|..+
T Consensus 431 la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 431 IAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEEECSSC-EEEEECC
T ss_pred EEEEecce-eeeeccc
Confidence 99998776 8888653
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-31 Score=274.79 Aligned_cols=291 Identities=10% Similarity=0.064 Sum_probs=229.0
Q ss_pred eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCc---eEEEEEeecCCCCCCCceeEEEeEEecCCe--EEEEc
Q 003467 197 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCGT--LVSAD 271 (817)
Q Consensus 197 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~---~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--l~s~~ 271 (817)
....+|.+.|.+++|+|++++|++++.||.|++||+.++. ....+. .|...|.+++|+|++. |++++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------RYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--------ECSSCEEEEEEEESSSEEEEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--------ecCCceEEEEECCCCCcEEEEEc
Confidence 4556899999999999999999999999999999998887 233333 4888999999999886 89999
Q ss_pred CCCcEEEEeC-CCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCcEEEEEeec---------ccCCCCCCCCCccc
Q 003467 272 STGSVQFWDS-RHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASC---------ESIGPNDGLSSSEV 339 (817)
Q Consensus 272 ~dg~i~iwd~-~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~~ 339 (817)
.||.|++||+ .+++. ..+.. |...|.+++|+| ++.+++++.|+.|++|++.+ .+
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------ 142 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL------------ 142 (342)
T ss_dssp TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES------------
T ss_pred CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC------------
Confidence 9999999999 87754 77888 999999999999 99999999999999999986 33
Q ss_pred cceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc-c
Q 003467 340 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE-F 418 (817)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~-~ 418 (817)
.+..+. |...|.+++++ |+ .+++++.|+.|++||+.. .
T Consensus 143 -----~~~~~~-~~~~v~~~~~~---------~~--------------------------~l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 143 -----NSNNTK-VKNKIFTMDTN---------SS--------------------------RLIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp -----CSSSSS-SCCCEEEEEEC---------SS--------------------------EEEEEESTTEEEEEESSCCT
T ss_pred -----eeeEEe-eCCceEEEEec---------CC--------------------------cEEEEeCCCeEEEEECCccc
Confidence 223333 66667777764 11 367777777777777653 1
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 498 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 498 (817)
..
T Consensus 182 ~~------------------------------------------------------------------------------ 183 (342)
T 1yfq_A 182 DD------------------------------------------------------------------------------ 183 (342)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec-CCCEEEEEecCCcEEEEEccCC-----
Q 003467 499 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSS----- 572 (817)
Q Consensus 499 ~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~----- 572 (817)
... .....+...+.+++|+| ++++|++++.||.|++|++...
T Consensus 184 --------------------------~~~------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 184 --------------------------NGT------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp --------------------------CCE------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred --------------------------cce------eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 000 01112333688999999 9999999999999999999876
Q ss_pred -ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCe
Q 003467 573 -ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 651 (817)
Q Consensus 573 -~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 651 (817)
+....+..+..... ...|...|++++|+|++++|++++.||.|++||+.+++....+...|...|++++ | ++++
T Consensus 232 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~ 306 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLK--DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNI 306 (342)
T ss_dssp CTTCEEEECCCCCTT--CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSE
T ss_pred cccceeeeccccccc--ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCe
Confidence 77777776321100 0123559999999999999999999999999999999988777655478999999 8 9999
Q ss_pred EEEEecCCe-EEEEE
Q 003467 652 LIITTSSNQ-VYVFD 665 (817)
Q Consensus 652 l~~~~~d~~-i~vwd 665 (817)
|++++.|+. .+.|.
T Consensus 307 l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 307 LCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEECTHHHHCSS
T ss_pred EEEEecCCccccccc
Confidence 999999997 44443
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-31 Score=288.10 Aligned_cols=279 Identities=17% Similarity=0.266 Sum_probs=221.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
+++++|+.||.|++||+.+++.. ..+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 144 ~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------- 210 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNTLECK---RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-------- 210 (435)
T ss_dssp SEEEEEESSSCEEEEESSSCCEE---EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------
T ss_pred CEEEEEeCCCeEEEEeCCCCeEE---EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--------
Confidence 49999999999999999877665 778899999999999 78999999999999999999999988887
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEE---EEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL---QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|...|.+++|++ +.+++++.||.|++||+.++... ..+.+|...|.+++| +++++++++.||.|++||+.++.
T Consensus 211 ~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 211 HHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp CCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred CCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence 6889999999974 59999999999999999987665 677889999999999 68899999999999999998877
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
.+..+..|...|.++++. + .++++|+.|
T Consensus 288 -----------------~~~~~~~~~~~v~~~~~~-----------~------------------------~~l~~g~~d 315 (435)
T 1p22_A 288 -----------------FVRTLNGHKRGIACLQYR-----------D------------------------RLVVSGSSD 315 (435)
T ss_dssp -----------------EEEEEECCSSCEEEEEEE-----------T------------------------TEEEEEETT
T ss_pred -----------------EEEEEcCCCCcEEEEEeC-----------C------------------------CEEEEEeCC
Confidence 677888999999988873 2 389999999
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
+.|++||+.+..
T Consensus 316 g~i~iwd~~~~~-------------------------------------------------------------------- 327 (435)
T 1p22_A 316 NTIRLWDIECGA-------------------------------------------------------------------- 327 (435)
T ss_dssp SCEEEEETTTCC--------------------------------------------------------------------
T ss_pred CeEEEEECCCCC--------------------------------------------------------------------
Confidence 999999986421
Q ss_pred ecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEE
Q 003467 488 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 567 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~ 567 (817)
.+ ..+..|...+.+++| ++.+|++|+.||.|++|
T Consensus 328 ---------------------------------------~~-----~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 328 ---------------------------------------CL-----RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp ---------------------------------------EE-----EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred ---------------------------------------EE-----EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence 00 112234446778887 78999999999999999
Q ss_pred EccCCc---------eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCC
Q 003467 568 DVSSSE---------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS 638 (817)
Q Consensus 568 d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 638 (817)
|+.+++ .+.++.+ |...|++++| |+++|++++.||.|++||+.+.......+. ..+
T Consensus 362 d~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~ 426 (435)
T 1p22_A 362 DLVAALDPRAPAGTLCLRTLVE-----------HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP--RSP 426 (435)
T ss_dssp EHHHHTSTTSCTTTTEEEEECC-----------CSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------
T ss_pred ECCCCCCccccccchheeeccC-----------CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC--CCC
Confidence 997665 6777777 8999999999 889999999999999999988765433322 235
Q ss_pred eEEEEecC
Q 003467 639 VTAAGFPP 646 (817)
Q Consensus 639 i~~l~~sp 646 (817)
..++.|.+
T Consensus 427 ~~~~~~~~ 434 (435)
T 1p22_A 427 SRTYTYIS 434 (435)
T ss_dssp --------
T ss_pred ccceeeec
Confidence 56666643
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-32 Score=284.65 Aligned_cols=260 Identities=18% Similarity=0.156 Sum_probs=218.9
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC--CCeEEEEEeecCceEEEEeeecC--CCcccee
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY--DLKQKIVLQSIDFSIWQMAVAPS--NSSLMHA 126 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~~--~~~~~~~ 126 (817)
+...+.+| ...|.+++|+|++++ |++++.||.|++||+. +++.+..+.+|...|++++|+++ +
T Consensus 3 ~~~~~~~h-~~~v~~~~~s~~~~~------l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------ 69 (379)
T 3jrp_A 3 MVVIANAH-NELIHDAVLDYYGKR------LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG------ 69 (379)
T ss_dssp --CCEEEC-CCCEEEEEECSSSSE------EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC------
T ss_pred ccEEecCC-cccEEEEEEcCCCCE------EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC------
Confidence 34567777 799999999999988 9999999999999998 67788899999999999999977 4
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceE
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV 206 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 206 (817)
++|++++.||.|++||+.++. ......+..|...|
T Consensus 70 --------------------------------------------~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 70 --------------------------------------------TILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASV 104 (379)
T ss_dssp --------------------------------------------SEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCE
T ss_pred --------------------------------------------CEEEEeccCCEEEEEEcCCCc-eeEeeeecCCCcce
Confidence 499999999999999998654 22347778899999
Q ss_pred EEEEEccC--CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-------------CC-eEEEE
Q 003467 207 LSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-------------CG-TLVSA 270 (817)
Q Consensus 207 ~~v~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-------------~~-~l~s~ 270 (817)
.+++|+|+ +.+|++++.||.|++||+.++......... .|...|.+++|+| ++ .++++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE------CCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec------CCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 99999999 999999999999999999987543333221 6888999999999 46 79999
Q ss_pred cCCCcEEEEeCCCCe----EEEEeecCccCeeEEEEecC---CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 271 DSTGSVQFWDSRHGT----LLQAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 271 ~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
+.||.|++||++++. .+..+.+|...|.+++|+|+ +++|++++.||.|++|++..+.... -
T Consensus 179 ~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------~ 246 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW------------K 246 (379)
T ss_dssp ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC------------E
T ss_pred eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc------------e
Confidence 999999999998653 55778889999999999999 8999999999999999998764110 0
Q ss_pred EEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 344 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
..+.....|...|.+++|+ |+++ +|++++.||.|++|++....
T Consensus 247 ~~~~~~~~~~~~v~~~~~s---------~~g~------------------------~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWS---------LSGN------------------------VLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEESSSSCCSSCEEEEEEC---------SSSC------------------------CEEEEESSSSEEEEEEEETT
T ss_pred eeeeccccCCCcEEEEEEc---------CCCC------------------------EEEEecCCCcEEEEeCCCCC
Confidence 1233445588899999998 8876 99999999999999998543
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-31 Score=284.54 Aligned_cols=268 Identities=16% Similarity=0.109 Sum_probs=222.6
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCC-----------------------------------
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGD----------------------------------- 58 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~----------------------------------- 58 (817)
.+|++++|+|||++|+++ .++.|.+||+.+++. ......+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNH-WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTE-EEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCc-ceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 578999999999977766 468999999998871 1112222211
Q ss_pred ------------------CCCcEEEEEEeecCCCCCCCceE-EEeeCCCeEEEEECC--CCeEEEEEe--ecCceEEEEe
Q 003467 59 ------------------PKSRISSLVWCHAGKMGLPGGRL-FSSSIDGSVSEWDLY--DLKQKIVLQ--SIDFSIWQMA 115 (817)
Q Consensus 59 ------------------~~~~V~~l~~s~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~i~~~~ 115 (817)
+...|.+++|+|++++ | ++++.|++|++||+. +++++..+. .|...|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~------l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR------LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSE------EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCE------EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence 1347999999999987 7 888899999999999 888888886 5678999999
Q ss_pred eecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCcee-
Q 003467 116 VAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI- 194 (817)
Q Consensus 116 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~- 194 (817)
|+|++ ++|++|+.+|.|++|++.++....
T Consensus 157 ~sp~~--------------------------------------------------~~l~~~~~~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 157 IAEDD--------------------------------------------------TTVIIADKFGDVYSIDINSIPEEKF 186 (450)
T ss_dssp ECTTS--------------------------------------------------SEEEEEETTSEEEEEETTSCCCSSC
T ss_pred EcCCC--------------------------------------------------CEEEEEeCCCcEEEEecCCcccccc
Confidence 99998 589999999999999998665442
Q ss_pred EeeccCCccceEEEEEEccC---CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEE
Q 003467 195 YHRSLPRVSGRVLSVTWSAD---GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA 270 (817)
Q Consensus 195 ~~~~~~~h~~~v~~v~~s~d---g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~ 270 (817)
....+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+.. +|...|.+++|+ ++ .|+++
T Consensus 187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-------~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-------GHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-------CCSSCEEEEEEC-STTEEEEE
T ss_pred cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-------CCCCceEEEEEC-CCCEEEEE
Confidence 22477889999999999999 99999999999999999999988877542 688999999999 88 79999
Q ss_pred cCCCcEEEEeCCCCeEEEEeecC-------------------------ccCeeEEEEecCCCEEEEEc-cCCcEEEEEe-
Q 003467 271 DSTGSVQFWDSRHGTLLQAHSFH-------------------------KGDVNALAAAPSHNRVFSTG-SDGQVILYKA- 323 (817)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~- 323 (817)
+.|+.|++||+.+++++..+..+ ...|.+++|+|++++|++++ .|+.|++|++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 99999999999999998888632 35689999999999999998 8999999999
Q ss_pred -ecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 324 -SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
... ..+..+..+..| ..|.+++++
T Consensus 339 ~~~~--------------~~l~~~~~~~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 339 EKQK--------------GDLALKQIITFP-YNVISLSAH 363 (450)
T ss_dssp SSST--------------TCEEEEEEEECS-SCEEEEEEE
T ss_pred cCCC--------------CceeeccEeccC-CceEEEEec
Confidence 332 123366677777 789999997
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.7e-32 Score=289.47 Aligned_cols=289 Identities=17% Similarity=0.205 Sum_probs=230.7
Q ss_pred ceEEEEECCCCCeEE-EEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEee-cCCCCCCCceEEEeeCCCeEEE
Q 003467 15 PVVALATSADDSQVA-AAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCH-AGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 15 ~I~~la~spdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~-~~~~~~~~~~l~s~~~d~~i~v 92 (817)
....++++|+...++ +|+.||.|.||++............+.+| .+.|.+++|+| ++.+ |++++.||+|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~~------l~s~s~dg~v~v 108 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH-TAPVLDIAWCPHNDNV------IASGSEDCTVMV 108 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCC-SSCEEEEEECTTCTTE------EEEEETTSEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecC-CCCEEEEEeCCCCCCE------EEEEeCCCeEEE
Confidence 445688998876544 57889999999986532111123345666 89999999999 7877 999999999999
Q ss_pred EECCCC-------eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 93 WDLYDL-------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 93 wd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
||+.++ +++..+.+|...|.+++|+|++.
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-------------------------------------------- 144 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------------------------------------- 144 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT--------------------------------------------
T ss_pred EEccCCCCccccCCceEEecCCCCeEEEEEECcCCC--------------------------------------------
Confidence 999988 67889999999999999999973
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeecc--CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.+|++++.||.|++||+.+++.+ ..+ .+|.+.|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 145 -----~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 216 (402)
T 2aq5_A 145 -----NVLLSAGCDNVILVWDVGTGAAV---LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216 (402)
T ss_dssp -----TEEEEEETTSCEEEEETTTTEEE---EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -----CEEEEEcCCCEEEEEECCCCCcc---EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc
Confidence 28999999999999999876554 566 78999999999999999999999999999999999998888742
Q ss_pred ecCCCCCCCcee-EEEeEEecCC-eEEEE---cCCCcEEEEeCCCCeE-EEEee-cCccCeeEEEEecCCCEEEE-EccC
Q 003467 244 GLGGLGSGPELC-IWSLLSLRCG-TLVSA---DSTGSVQFWDSRHGTL-LQAHS-FHKGDVNALAAAPSHNRVFS-TGSD 315 (817)
Q Consensus 244 ~~~~~~~~~~~~-v~~v~~~~~~-~l~s~---~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~l~~s~~~~~l~~-~~~d 315 (817)
.|... +.++.|+|++ .+++| +.++.|++||+++++. +.... .|...+.+++|+|++++|++ ++.|
T Consensus 217 -------~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 217 -------PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp -------SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred -------CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 45544 8899999999 56666 6899999999998654 33333 46788999999999999975 5579
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
|.|++|++.++... ...+.... |...|.+++|+ |++.
T Consensus 290 g~i~i~d~~~~~~~-------------~~~l~~~~-~~~~v~~~~~s---------p~~~-------------------- 326 (402)
T 2aq5_A 290 SSIRYFEITSEAPF-------------LHYLSMFS-SKESQRGMGYM---------PKRG-------------------- 326 (402)
T ss_dssp SCEEEEEECSSTTC-------------EEEEEEEC-CSSCCSEEEEC---------CGGG--------------------
T ss_pred CeEEEEEecCCCcc-------------eEeecccc-cCCcccceEEe---------cccc--------------------
Confidence 99999999876510 01122222 66889999998 7775
Q ss_pred CCCcEEEEecCCCeEEEEeCCcc
Q 003467 396 LGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
++++ .++.+++|++.+.
T Consensus 327 ----~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 327 ----LEVN--KCEIARFYKLHER 343 (402)
T ss_dssp ----SCGG--GTEEEEEEEEETT
T ss_pred ----ccee--cceeEEEEEcCCC
Confidence 5543 5669999998763
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=278.98 Aligned_cols=320 Identities=15% Similarity=0.178 Sum_probs=241.7
Q ss_pred EEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 91 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
..|+....+.+..+.+|...|.+++|+|++. ++
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----------------------------------------------~g 54 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTL-----------------------------------------------PG 54 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTS-----------------------------------------------SS
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCC-----------------------------------------------Cc
Confidence 3455677778888999999999999999830 00
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
++|++|+.||.|++||+.+.... ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------- 124 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQT-IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA--------- 124 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCE-EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------
T ss_pred eEEEEECCCCcEEEEEcCCCCce-eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec---------
Confidence 49999999999999999862322 22567789999999999999999999999999999999998877644
Q ss_pred CCceeEEEeEE--ecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 251 GPELCIWSLLS--LRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 251 ~~~~~v~~v~~--~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.|...|.+++| ++++ .|++++.||.|++||+++++.+..+..|. .+.++.+. ...+++++.++.+.+|++....
T Consensus 125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSC
T ss_pred cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEecccc
Confidence 48899999999 8888 69999999999999999999999988764 56666666 4578899999999999998754
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
. .+ ......+.+.+.++++. ++.. .....+++++.|
T Consensus 202 ~-------------~~--~~~~~~~~~~~~~~~~~---------~~~~--------------------~~~~~~~~~~~d 237 (368)
T 3mmy_A 202 S-------------EF--RRIESPLKHQHRCVAIF---------KDKQ--------------------NKPTGFALGSIE 237 (368)
T ss_dssp E-------------EE--EECCCSCSSCEEEEEEE---------ECTT--------------------SCEEEEEEEETT
T ss_pred c-------------hh--hhccccccCCCceEEEc---------ccCC--------------------CCCCeEEEecCC
Confidence 1 11 11223344455555554 2221 011249999999
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
+.+++|++....... .+..+.
T Consensus 238 g~i~i~~~~~~~~~~-----------------------------------------------------------~~~~~~ 258 (368)
T 3mmy_A 238 GRVAIHYINPPNPAK-----------------------------------------------------------DNFTFK 258 (368)
T ss_dssp SEEEEEESSCSCHHH-----------------------------------------------------------HSEEEE
T ss_pred CcEEEEecCCCCccc-----------------------------------------------------------cceeee
Confidence 999999987532100 000000
Q ss_pred ecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEE
Q 003467 488 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV 567 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~ 567 (817)
... . ... ......+...+++++|+|++++|++++.||.|++|
T Consensus 259 ~~~-------------------~-------------~~~------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 259 CHR-------------------S-------------NGT------NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp CSE-------------------E-------------C----------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred eee-------------------c-------------ccc------cccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 000 0 000 01223444579999999999999999999999999
Q ss_pred EccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 568 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 568 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
|+.+++.+..+.. |...|++++|+|||++||+++.|+..+.|++
T Consensus 301 d~~~~~~~~~~~~-----------~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 301 DKDARTKLKTSEQ-----------LDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ETTTTEEEEECCC-----------CSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ECCCCcEEEEecC-----------CCCCceEEEECCCCCeEEEEecccccccccc
Confidence 9999999999987 8999999999999999999999886555443
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3e-30 Score=268.68 Aligned_cols=235 Identities=12% Similarity=0.156 Sum_probs=187.7
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE-EEeeCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL-FSSSID 87 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l-~s~~~d 87 (817)
...|.+.|++++|||||++||+|+.+| ++|||..+++ ....... ..+..++|.++++. + ++++.|
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~----~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~d 80 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA----HIMSQEM---RHLSKVRMLHRTNY------VAFVTGVK 80 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE----EEEEEEC---SCCCEEEECTTSSE------EEEECSST
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc----eeeeeec---CCeEEEEEcCCCCE------EEEEECCc
Confidence 378999999999999999999998776 8899988764 2322222 24778889888875 5 567788
Q ss_pred CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 88 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 88 ~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
++|++||+.+++++..+. +...|.+++++++.
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~----------------------------------------------- 112 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF----------------------------------------------- 112 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-----------------------------------------------
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-----------------------------------------------
Confidence 999999999999999887 66799999998764
Q ss_pred ccCCEEEEEeCCCcEEEEEecCC-CceeEeeccCCccceEEEEEEccCCCEEEE--eeCCCcEEEEECCCCce-------
Q 003467 168 VEDRRVALACDDGCVRIYRITDS-DELIYHRSLPRVSGRVLSVTWSADGNMLYS--GSSDGYIRSWDAKLGYE------- 237 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s--~~~dg~i~vwd~~~g~~------- 237 (817)
++++ .++.|++||+.+. +.+ ..+.. ....+++++ .++++ |+.||.|++||+.++..
T Consensus 113 -----~~~~-~~~~i~i~d~~~~~~~~---~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 113 -----IVVS-YGDVISVFKFGNPWKRI---TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp -----EEEE-ETTEEEEEESSTTCCBS---SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------
T ss_pred -----EEEE-EcCEEEEEECCCCceee---EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 3333 3789999999866 443 33333 444566776 56666 68899999999998751
Q ss_pred ---------EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCc-EEEEeCCCCeEEEEee-c-CccCeeEEEEec
Q 003467 238 ---------IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHS-F-HKGDVNALAAAP 304 (817)
Q Consensus 238 ---------~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~l~~s~ 304 (817)
+..+. +|...|.+++|+|+| .|++++.||+ |++||+++++++..+. + |...|.+++|+|
T Consensus 179 ~~~~~~~p~~~~~~--------~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 179 VQQKAILGKGVLIK--------AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp --------CCEEEC--------CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT
T ss_pred ccccccCcccEEEE--------ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC
Confidence 34444 799999999999999 7999999999 9999999999999998 5 999999999999
Q ss_pred CCCEEEEEccCCcEEEEEeeccc
Q 003467 305 SHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 305 ~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
++++|++++.|++|++|++....
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEECCCEEEEEEccCCC
Confidence 99999999999999999997654
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=4.5e-31 Score=283.12 Aligned_cols=257 Identities=14% Similarity=0.191 Sum_probs=217.9
Q ss_pred eeeccCCCceEEEEECCC-CCeEEEEecCCcEEEEecCCCC------CCcEEEEEEcCCCCCcEEEEEEeecCC-CCCCC
Q 003467 7 SSIDWKPSPVVALATSAD-DSQVAAAREDGSLEIWLVSPGT------SGWHCQLTVHGDPKSRISSLVWCHAGK-MGLPG 78 (817)
Q Consensus 7 r~~~~h~~~I~~la~spd-g~~la~~~~dg~i~iwd~~~~~------~~~~~~~~~~g~~~~~V~~l~~s~~~~-~~~~~ 78 (817)
.....|++.|++++|+|+ +.+||+|+.+|.|.|||+.+.. ........+.+| ...|.+|+|+|++. +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~---- 196 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGYGLSWNPNLNGY---- 196 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCCCEEECTTSTTE----
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC-CCCeEEEEeCCCCCCe----
Confidence 334689999999999997 7899999999999999998610 001135667777 78999999999987 5
Q ss_pred ceEEEeeCCCeEEEEECCCCeE-------EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQ-------KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
|++++.||+|++||+.++.. ...+.+|...|.+++|+|++.
T Consensus 197 --l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------------------------ 244 (430)
T 2xyi_A 197 --LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE------------------------------ 244 (430)
T ss_dssp --EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT------------------------------
T ss_pred --EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC------------------------------
Confidence 99999999999999987432 466778999999999999553
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCcEEEE
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSW 230 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vw 230 (817)
..+++++.||.|++||+.++........+..|...|.+++|+|++. +|++|+.||.|++|
T Consensus 245 -------------------~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vw 305 (430)
T 2xyi_A 245 -------------------SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305 (430)
T ss_dssp -------------------TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -------------------CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 3899999999999999986632222356678999999999999997 68899999999999
Q ss_pred ECCC-CceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC--------------CeEEEEeecC
Q 003467 231 DAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH--------------GTLLQAHSFH 293 (817)
Q Consensus 231 d~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~h 293 (817)
|+++ +..+..+. .|...|.+++|+|++ .|++++.||.|++||+.. .+++..+.+|
T Consensus 306 d~~~~~~~~~~~~--------~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 377 (430)
T 2xyi_A 306 DLRNLKLKLHSFE--------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377 (430)
T ss_dssp ETTCTTSCSEEEE--------CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC
T ss_pred eCCCCCCCeEEee--------cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC
Confidence 9998 55677776 688999999999998 489999999999999986 3677888899
Q ss_pred ccCeeEEEEecCCC-EEEEEccCCcEEEEEeeccc
Q 003467 294 KGDVNALAAAPSHN-RVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 294 ~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 327 (817)
...|.+++|+|++. .|++++.||.|++|++....
T Consensus 378 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 99999999999999 89999999999999997754
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=1.2e-30 Score=272.47 Aligned_cols=277 Identities=18% Similarity=0.168 Sum_probs=224.7
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC----eEEEEEeecCceEEEEeeecC--CCcccee
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL----KQKIVLQSIDFSIWQMAVAPS--NSSLMHA 126 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~~--~~~~~~~ 126 (817)
..+.+| .+.|++++|+|++++ |++++.||+|++||+.++ +....+.+|...|.+++|+|. +
T Consensus 5 ~~~~gH-~~~v~~~~~~~~~~~------l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~------ 71 (351)
T 3f3f_A 5 PFDSGH-DDLVHDVVYDFYGRH------VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG------ 71 (351)
T ss_dssp CEECCC-SSCEEEEEECSSSSE------EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC------
T ss_pred ccCccc-ccceeEEEEcCCCCE------EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC------
Confidence 455666 899999999999988 999999999999999977 567788899999999999994 5
Q ss_pred eccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc------eeEeeccC
Q 003467 127 VTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE------LIYHRSLP 200 (817)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~ 200 (817)
.+|++++.||.|++||+.++.. ......+.
T Consensus 72 --------------------------------------------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 72 --------------------------------------------RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp --------------------------------------------SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred --------------------------------------------CEEEEEcCCCeEEEEecCCCcccccccCcceeeeec
Confidence 4999999999999999986531 13347788
Q ss_pred CccceEEEEEEccC--CCEEEEeeCCCcEEEEECCCCceEEEEEee-----cCCCCCCCceeEEEeEEecC---C-eEEE
Q 003467 201 RVSGRVLSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVG-----LGGLGSGPELCIWSLLSLRC---G-TLVS 269 (817)
Q Consensus 201 ~h~~~v~~v~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~-----~~~~~~~~~~~v~~v~~~~~---~-~l~s 269 (817)
.|.+.|.+++|+|+ +.+|++++.||.|++||+.+++.+..+... .......+...+.+++|+|+ + .+++
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 187 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEE
Confidence 99999999999999 999999999999999999988765443321 11122357788999999996 4 7999
Q ss_pred EcCCCcEEEEeCCCCeE--EEEeecCccCeeEEEEecCC----CEEEEEccCCcEEEEEeecccCCCCC-----------
Q 003467 270 ADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSH----NRVFSTGSDGQVILYKASCESIGPND----------- 332 (817)
Q Consensus 270 ~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~----------- 332 (817)
++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++.||.|++||+.........
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 267 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD 267 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccC
Confidence 99999999998887765 77788999999999999998 89999999999999999875311000
Q ss_pred ------------------CCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 333 ------------------GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 333 ------------------~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
.............+..+.+|...|.+++|+ |+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---------~~~~------------------- 319 (351)
T 3f3f_A 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN---------LTGT------------------- 319 (351)
T ss_dssp -----------------------CCSEEEEEEEEECTTSSCEEEEEEC---------SSSC-------------------
T ss_pred CCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc---------CCCC-------------------
Confidence 000011122345777888999999999998 7775
Q ss_pred cCCCcEEEEecCCCeEEEEeCCccc
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
+|++++.||.|++|++....
T Consensus 320 -----~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 -----ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -----CEEEEETTSCEEEEEECTTS
T ss_pred -----EEEEecCCCcEEEEecCcCc
Confidence 99999999999999998754
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-31 Score=306.08 Aligned_cols=257 Identities=18% Similarity=0.236 Sum_probs=216.1
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeec--CCCCCCCceEEEe
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHA--GKMGLPGGRLFSS 84 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~--~~~~~~~~~l~s~ 84 (817)
..+.+|.++|++++|+|+|++||+|+.||.|+|||+.++. ..+...+.+| .+.|.+++|+|+ +++ |+++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h-~~~V~~l~~s~~~~~~~------l~s~ 73 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGH-EGPVWRVDWAHPKFGTI------LASC 73 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCC-SSCEEEEEECCTTSCSE------EEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCC-cCceEEEEecCCCCCCE------EEEE
Confidence 4578999999999999999999999999999999998543 2356778887 899999999998 766 9999
Q ss_pred eCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecC--CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 85 SIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPS--NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
+.||+|++||+.+++ ....+.+|...|.+++|+|+ +
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~---------------------------------------- 113 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG---------------------------------------- 113 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC----------------------------------------
T ss_pred eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC----------------------------------------
Confidence 999999999999987 77888899999999999998 5
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-------------CCCEEEEeeCCCcE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-------------DGNMLYSGSSDGYI 227 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------dg~~l~s~~~dg~i 227 (817)
..+++|+.||.|++||+.++... ....+.+|...|.+++|+| ++.+|++|+.||.|
T Consensus 114 ----------~~l~sgs~dg~I~vwdl~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I 182 (753)
T 3jro_A 114 ----------PLLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (753)
T ss_dssp ----------SEEEEEETTSEEEEEECCSSSCC-CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCE
T ss_pred ----------CEEEEEeCCCcEEEEEeecCCCc-ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeE
Confidence 49999999999999999865332 1245678999999999999 58999999999999
Q ss_pred EEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecC---C-eEEEEcCCCcEEEEeCCCCe-----EEEEeecCccCee
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G-TLVSADSTGSVQFWDSRHGT-----LLQAHSFHKGDVN 298 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~ 298 (817)
++||+.++.......... .+|...|.+++|+|+ + .+++++.||.|++||+.+++ .+.....|...|.
T Consensus 183 ~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 258 (753)
T 3jro_A 183 KIWKYNSDAQTYVLESTL----EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (753)
T ss_dssp EEEEEETTTTEEEEEEEE----CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCC
T ss_pred EEEeccCCcccceeeeee----cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceE
Confidence 999998875432222111 168899999999999 7 79999999999999999864 3334456889999
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+++|+|+++++++++.||.|++|++....
T Consensus 259 ~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 259 RASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999999998643
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.4e-30 Score=277.25 Aligned_cols=252 Identities=16% Similarity=0.260 Sum_probs=212.0
Q ss_pred eeeccCCCceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCCc---EEEEEEcCCCCCcEEEEEEeecC-CCCCCCceE
Q 003467 7 SSIDWKPSPVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSGW---HCQLTVHGDPKSRISSLVWCHAG-KMGLPGGRL 81 (817)
Q Consensus 7 r~~~~h~~~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~---~~~~~~~g~~~~~V~~l~~s~~~-~~~~~~~~l 81 (817)
..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.... .....+.+| ...|.+++|+|++ .+ |
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~------l 147 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNV------L 147 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTE------E
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCE------E
Confidence 34678999999999999 99999999999999999999873110 135677777 7899999999998 45 9
Q ss_pred EEeeCCCeEEEEECCCCeEEEEE--eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 82 FSSSIDGSVSEWDLYDLKQKIVL--QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 82 ~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
++++.|++|++||+.+++++..+ ..|...|.+++|+|++
T Consensus 148 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------- 188 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG--------------------------------------- 188 (402)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---------------------------------------
T ss_pred EEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---------------------------------------
Confidence 99999999999999999999999 7899999999999988
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc-CCccce-EEEEEEccCCCEEEEe---eCCCcEEEEECCC
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL-PRVSGR-VLSVTWSADGNMLYSG---SSDGYIRSWDAKL 234 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~-v~~v~~s~dg~~l~s~---~~dg~i~vwd~~~ 234 (817)
++|++++.||.|++||+.++..+ ..+ ..|.+. +.+++|+|++++|++| +.|+.|++||+.+
T Consensus 189 -----------~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 189 -----------ALICTSCRDKRVRVIEPRKGTVV---AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp -----------SCEEEEETTSEEEEEETTTTEEE---EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred -----------CEEEEEecCCcEEEEeCCCCcee---eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 48999999999999999876554 555 677765 8999999999999999 7899999999998
Q ss_pred Cce-EEEEEeecCCCCCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeE-EEEeec--CccCeeEEEEecCCCE
Q 003467 235 GYE-IYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTL-LQAHSF--HKGDVNALAAAPSHNR 308 (817)
Q Consensus 235 g~~-~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~l~~s~~~~~ 308 (817)
++. +..... .+...+.+++|+|++ .+ ++++.||.|++||+.+++. +..+.. |...|.+++|+|++.+
T Consensus 255 ~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 255 LEEPLSLQEL-------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL 327 (402)
T ss_dssp CSSCSEEEEC-------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred ccCCceEEec-------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence 765 333332 466779999999999 45 4677899999999998873 444444 4589999999999987
Q ss_pred EEEEccCCcEEEEEeeccc
Q 003467 309 VFSTGSDGQVILYKASCES 327 (817)
Q Consensus 309 l~~~~~dg~i~iw~~~~~~ 327 (817)
+++ .++.+++|++.++.
T Consensus 328 ~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 328 EVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CGG--GTEEEEEEEEETTE
T ss_pred cee--cceeEEEEEcCCCc
Confidence 764 56799999998754
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.2e-29 Score=264.19 Aligned_cols=307 Identities=10% Similarity=0.083 Sum_probs=212.8
Q ss_pred EEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec
Q 003467 184 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR 263 (817)
Q Consensus 184 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 263 (817)
||++.+...+ ..+..|...|.+++|+|||++|++|+.++ +++||+.+++....... + .+..+.+.+
T Consensus 3 i~s~~~~~~~---~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--------~--~~~~~~~~~ 68 (355)
T 3vu4_A 3 LGSMITRNPI---VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--------R--HLSKVRMLH 68 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--------S--CCCEEEECT
T ss_pred cccccccCCc---cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--------C--CeEEEEEcC
Confidence 4555544443 56688999999999999999999998775 78999988776655441 2 356677777
Q ss_pred CC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc-cCCCCCCCCCcccc
Q 003467 264 CG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE-SIGPNDGLSSSEVI 340 (817)
Q Consensus 264 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~ 340 (817)
++ .+++++.+++|++||..+++.+..+. +...|.+++++++. ++++ .|+.|++|++.+. +
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~------------- 131 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK------------- 131 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC-------------
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce-------------
Confidence 66 34678888999999999999999887 56799999998764 4444 5789999999876 3
Q ss_pred ceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE--ecCCCeEEEEeCCcc
Q 003467 341 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS--AGDDTKLFAYCANEF 418 (817)
Q Consensus 341 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~dg~i~~~~~~~~ 418 (817)
.+..+.. ....++++ + . +++. |+.||.|++||+.+.
T Consensus 132 ----~~~~~~~---~~~~~~~s---------~-~-------------------------~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 132 ----RITDDIR---FGGVCEFS---------N-G-------------------------LLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp ----BSSCCEE---EEEEEEEE---------T-T-------------------------EEEEEESSCTTCEEEEECCC-
T ss_pred ----eeEEecc---CCceEEEE---------c-c-------------------------EEEEeCCCcCcEEEEEECCCC
Confidence 1222222 22233343 2 1 4444 688999999998753
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 498 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 498 (817)
....... ...
T Consensus 170 ~~~~~~~------------------------------------------------------------------~~~---- 179 (355)
T 3vu4_A 170 GSATTQD------------------------------------------------------------------QGV---- 179 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Ccccccc------------------------------------------------------------------ccc----
Confidence 3110000 000
Q ss_pred ecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCc-EEEEEccCCceeee
Q 003467 499 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR-IYVVDVSSSELLHT 577 (817)
Q Consensus 499 ~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~-i~v~d~~~~~~~~~ 577 (817)
+ ...+. .....+.+|...|++++|+|||++|++++.|++ |++||+.+++.+.+
T Consensus 180 ---~----------------------~~~~~-p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 180 ---Q----------------------QKAIL-GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp ---------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred ---c----------------------ccccC-cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 0 00000 001335677889999999999999999999998 99999999999999
Q ss_pred ec-cCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE----------------------EEEecC
Q 003467 578 FT-PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH----------------------WFISRL 634 (817)
Q Consensus 578 ~~-~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~----------------------~~~~~~ 634 (817)
+. +. |...|++++|+|||++||+++.|++|+|||++..... ..++..
T Consensus 234 ~~~g~----------h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
T 3vu4_A 234 FRRGL----------DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD 303 (355)
T ss_dssp EECTT----------CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred EEcCC----------CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence 87 32 7889999999999999999999999999999765311 011111
Q ss_pred CCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 635 EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 635 ~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
.......++|++ +++.|++++.||.+++|++..++
T Consensus 304 ~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 304 KHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 122347799999 99999999999999999997665
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=265.78 Aligned_cols=311 Identities=13% Similarity=0.084 Sum_probs=234.4
Q ss_pred EEeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 175 LACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
.++.++.+.||.+.. ...+.....+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....+.... ..+|.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---~~~~~ 169 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---YKKKL 169 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---HHTTC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc---ccccC
Confidence 456667555555542 1223333444444 345699999988888888889999999999998876443211 11577
Q ss_pred eeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE-ccCCcEEEEEeecccCCCC
Q 003467 254 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPN 331 (817)
Q Consensus 254 ~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~ 331 (817)
..|++++|++++ .+++++.++.|++||+++++.+..+..|...+.+++|+|++++++++ +.|+.|++||+.+++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---- 245 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---- 245 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----
Confidence 899999999999 68889999999999999999999999999999999999999988655 479999999998765
Q ss_pred CCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec------
Q 003467 332 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG------ 405 (817)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------ 405 (817)
.+..+..+ ..+.+++++ |+++ .+++++
T Consensus 246 -------------~~~~~~~~-~~~~~~~~~---------~~g~------------------------~l~~~~~~~~~~ 278 (433)
T 3bws_A 246 -------------EIRKTDKI-GLPRGLLLS---------KDGK------------------------ELYIAQFSASNQ 278 (433)
T ss_dssp -------------EEEECCCC-SEEEEEEEC---------TTSS------------------------EEEEEEEESCTT
T ss_pred -------------EEEEecCC-CCceEEEEc---------CCCC------------------------EEEEEECCCCcc
Confidence 34444443 346777776 6664 666655
Q ss_pred --CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCcccee
Q 003467 406 --DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL 483 (817)
Q Consensus 406 --~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~ 483 (817)
.|+.|++||+.+.+
T Consensus 279 ~~~dg~i~~~d~~~~~---------------------------------------------------------------- 294 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEK---------------------------------------------------------------- 294 (433)
T ss_dssp CSCCEEEEEEETTTTE----------------------------------------------------------------
T ss_pred ccCCCeEEEEECCCCc----------------------------------------------------------------
Confidence 35566666554311
Q ss_pred eeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEE-EEEecCC
Q 003467 484 VQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDR 562 (817)
Q Consensus 484 ~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l-~~~~~dg 562 (817)
....+ .+...+..++|+|+++++ ++++.++
T Consensus 295 -------------------------------------------~~~~~------~~~~~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 295 -------------------------------------------LIDTI------GPPGNKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp -------------------------------------------EEEEE------EEEECEEEEEECSSTTEEEEEETTTT
T ss_pred -------------------------------------------EEeec------cCCCCcceEEECCCCCEEEEEecCCC
Confidence 00000 111246788999999866 5557899
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC---------------CCcEEEEECCCcce
Q 003467 563 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---------------FGDVYIFNLEIQRQ 627 (817)
Q Consensus 563 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~---------------dg~i~vwd~~~~~~ 627 (817)
.|++||+.+++.+..+. +...+.+++|+|||++|++++. ||.|++||+.+++.
T Consensus 326 ~v~v~d~~~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 326 KIEVYDLKEKKVQKSIP------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEEETTTTEEEEEEE------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCcEEEEec------------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 99999999998888876 5778999999999999998876 57999999999988
Q ss_pred EEEEecCCCCCeEEEEecCCCCCeEEEEec-CCeEEEEEcCC
Q 003467 628 HWFISRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEA 668 (817)
Q Consensus 628 ~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~-d~~i~vwd~~~ 668 (817)
...+.. ...+.+++|+| ++++|++++. |+.|++|++++
T Consensus 394 ~~~~~~--~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEA--GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEC--SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecC--CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 777764 35799999999 9999998875 99999999864
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.4e-29 Score=271.57 Aligned_cols=266 Identities=13% Similarity=0.172 Sum_probs=217.6
Q ss_pred EEcCCCCCcEEEEEEeec-CCCCCCCceEEEeeCCCeEEEEECCC----------CeEEEEEeecCceEEEEeeecCCCc
Q 003467 54 TVHGDPKSRISSLVWCHA-GKMGLPGGRLFSSSIDGSVSEWDLYD----------LKQKIVLQSIDFSIWQMAVAPSNSS 122 (817)
Q Consensus 54 ~~~g~~~~~V~~l~~s~~-~~~~~~~~~l~s~~~d~~i~vwd~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~ 122 (817)
...+| .+.|++++|+|+ +.+ |++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++.
T Consensus 123 ~~~~h-~~~v~~l~~~p~~~~~------lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~- 194 (430)
T 2xyi_A 123 IKINH-EGEVNRARYMPQNACV------IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN- 194 (430)
T ss_dssp EEEEE-SSCCSEEEEETTEEEE------EEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-
T ss_pred EEEcC-CCcEEEEEECCCCCcE------EEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-
Confidence 33445 789999999997 555 99999999999999987 678889999999999999999983
Q ss_pred cceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc----eeEeec
Q 003467 123 LMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE----LIYHRS 198 (817)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~ 198 (817)
.+|++|+.||.|++|++..+.. +.....
T Consensus 195 ------------------------------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 226 (430)
T 2xyi_A 195 ------------------------------------------------GYLLSASDDHTICLWDINATPKEHRVIDAKNI 226 (430)
T ss_dssp ------------------------------------------------TEEEEECTTSCEEEEETTSCCBGGGEEECSEE
T ss_pred ------------------------------------------------CeEEEEeCCCeEEEEeCCCCCCCCceecccee
Confidence 2899999999999999986322 122356
Q ss_pred cCCccceEEEEEEcc-CCCEEEEeeCCCcEEEEECCCC---ceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcC
Q 003467 199 LPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLG---YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADS 272 (817)
Q Consensus 199 ~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~g---~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~ 272 (817)
+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+. .|...|.+++|+|++ .+++|+.
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~i~~~p~~~~~l~tg~~ 298 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--------AHTAEVNCLSFNPYSEFILATGSA 298 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--------CCSSCEEEEEECSSCTTEEEEEET
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--------cCCCCeEEEEeCCCCCCEEEEEeC
Confidence 778999999999999 7789999999999999999987 5666665 688999999999988 4889999
Q ss_pred CCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCCC-EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccc
Q 003467 273 TGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 273 dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
||.|++||+++ +..+..+..|...|.+++|+|+++ .|++++.|+.|++|++......... ..........+....
T Consensus 299 dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST---EDAEDGPPELLFIHG 375 (430)
T ss_dssp TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH---HHHHHCCTTEEEECC
T ss_pred CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc---cccccCCcceEEEcC
Confidence 99999999997 567889999999999999999995 6889999999999999873210000 000000001567778
Q ss_pred cCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 351 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 351 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
+|...|++++|+ |+++ -+|++++.|+.|++|++...
T Consensus 376 ~h~~~v~~~~~~---------p~~~-----------------------~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 376 GHTAKISDFSWN---------PNEP-----------------------WIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCSSCEEEEEEC---------SSST-----------------------TEEEEEETTSEEEEEEECHH
T ss_pred CCCCCceEEEEC---------CCCC-----------------------CEEEEEECCCCEEEeEcccc
Confidence 899999999997 6653 28999999999999999763
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=268.59 Aligned_cols=235 Identities=14% Similarity=0.029 Sum_probs=187.3
Q ss_pred eEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC
Q 003467 16 VVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL 95 (817)
Q Consensus 16 I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~ 95 (817)
.....+.+|+.+||+|+.||.|++||+.+++. ...+. ...|.+++|+|+ +++++.|++|++|+.
T Consensus 39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~----~~~~~---~~~v~~~~~~~~---------~~s~s~D~~i~~w~~ 102 (343)
T 3lrv_A 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKT----ITTIT---TPNPRTGGEHPA---------IISRGPCNRLLLLYP 102 (343)
T ss_dssp EECSSSSEEEEEEEEEEETTEEEEEEESSSSC----EEEEE---EECCCTTCCCCS---------EEEECSTTEEEEEET
T ss_pred hhhhhhcCCCCEEEEECCCCcEEEEECCCCcE----EEEEe---cCCceeeeeCCc---------eEEecCCCeEEEEEc
Confidence 33345567899999999999999999998874 34443 246777778775 899999999999966
Q ss_pred C---------CCeEEEEEe-ecCceEEEEeeec--CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 96 Y---------DLKQKIVLQ-SIDFSIWQMAVAP--SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 96 ~---------~~~~~~~~~-~~~~~i~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
. +++.+..+. .|..+|.+++|+| ++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------------- 139 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT------------------------------------------- 139 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-------------------------------------------
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-------------------------------------------
Confidence 5 555455554 6778999999999 77
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc-CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceE-EEE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRI 241 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~-~~~ 241 (817)
+++++++.||.|++||+.++..+ ... ..|...|.+++|+|+|.+|++|+.||.|++||+++++.+ ..+
T Consensus 140 -------~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 140 -------EYFIWADNRGTIGFQSYEDDSQY---IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209 (343)
T ss_dssp -------CEEEEEETTCCEEEEESSSSCEE---EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred -------CEEEEEeCCCcEEEEECCCCcEE---EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence 49999999999999999876654 333 345668999999999999999999999999999999887 666
Q ss_pred EeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeec---CccCee--EEEEecCCCEEEEEcc-
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDVN--ALAAAPSHNRVFSTGS- 314 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~s~~~~~l~~~~~- 314 (817)
.. .|...|.+++|+|++ .|++++ ++.|++||+++++.+..+.. |...+. +++|+|++++|++++.
T Consensus 210 ~~-------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 210 PV-------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE 281 (343)
T ss_dssp CC-------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred ec-------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence 51 388999999999999 677777 55999999998877655543 444444 6999999999999888
Q ss_pred CCcEEEEEeeccc
Q 003467 315 DGQVILYKASCES 327 (817)
Q Consensus 315 dg~i~iw~~~~~~ 327 (817)
|+.|++|++....
T Consensus 282 d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 282 SNSLTIYKFDKKT 294 (343)
T ss_dssp TTEEEEEEECTTT
T ss_pred CCcEEEEEEcccc
Confidence 9999999997654
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=290.12 Aligned_cols=258 Identities=18% Similarity=0.169 Sum_probs=217.0
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC--CCeEEEEEeecCceEEEEeeecC--CCccceeec
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY--DLKQKIVLQSIDFSIWQMAVAPS--NSSLMHAVT 128 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~~--~~~~~~~~~ 128 (817)
..+.|| .+.|++++|+|++++ |++++.||+|++||+. +++....+.+|.++|++++|+|+ +
T Consensus 3 ~~l~gH-~~~V~~l~~s~dg~~------latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-------- 67 (753)
T 3jro_A 3 VIANAH-NELIHDAVLDYYGKR------LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------- 67 (753)
T ss_dssp -----C-CCCEEEECCCSSSCC------EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC--------
T ss_pred eecccC-cceeEEEEECCCCCe------EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC--------
Confidence 456677 899999999999988 9999999999999998 66788899999999999999988 5
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEE
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLS 208 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 208 (817)
++|++|+.||.|++||+.++. ......+.+|...|.+
T Consensus 68 ------------------------------------------~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~h~~~V~~ 104 (753)
T 3jro_A 68 ------------------------------------------TILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNS 104 (753)
T ss_dssp ------------------------------------------SEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEE
T ss_pred ------------------------------------------CEEEEEeCCCeEEEEECCCCc-ccccccccCCCCCeEE
Confidence 499999999999999998653 3334778889999999
Q ss_pred EEEccC--CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec-------------CC-eEEEEcC
Q 003467 209 VTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-------------CG-TLVSADS 272 (817)
Q Consensus 209 v~~s~d--g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-------------~~-~l~s~~~ 272 (817)
++|+|+ ++++++|+.||.|++||+.++......... +|...|.+++|+| ++ .+++|+.
T Consensus 105 v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~------~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE------CCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred EEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee------cCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 999999 999999999999999999887433222221 6889999999999 35 7999999
Q ss_pred CCcEEEEeCCCC----eEEEEeecCccCeeEEEEecC---CCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEE
Q 003467 273 TGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 273 dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
||.|++||++++ .....+.+|...|.+++|+|+ ++++++++.||.|++|++.++...... .
T Consensus 179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------------~ 246 (753)
T 3jro_A 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK------------T 246 (753)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC------------C
T ss_pred CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee------------E
Confidence 999999999876 667788899999999999999 899999999999999999886421110 2
Q ss_pred eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 346 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 346 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
......|...|.+++|+ |+++ ++++++.||.|++|++....
T Consensus 247 ~~~~~~~~~~v~~l~~s---------pdg~------------------------~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWS---------LSGN------------------------VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp BSSSSCCSSCCCCEEEC---------TTTC------------------------CEEEECSSSCEECCBCCSSS
T ss_pred EeccCCCCCceEEEEEc---------CCCC------------------------EEEEEcCCCEEEEEecCCCC
Confidence 33446688899999998 7776 99999999999999998644
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.6e-28 Score=256.51 Aligned_cols=268 Identities=13% Similarity=0.127 Sum_probs=219.5
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceE-EEeeCCCeEEEEECCCCeEEEEE
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRL-FSSSIDGSVSEWDLYDLKQKIVL 104 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~ 104 (817)
.++++++.|+.|++||+.+++ +...+.++ ..+.+++|+|++++ | ++++.|++|++||+.+++.+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~----~~~~~~~~--~~~~~~~~s~dg~~------l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK----VTATIPVG--SNPMGAVISPDGTK------VYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE----EEEEEECS--SSEEEEEECTTSSE------EEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCe----EEEEeecC--CCcceEEECCCCCE------EEEECCCCCeEEEEECCCCeEEEEE
Confidence 467888999999999999886 56677765 45899999999986 6 56778999999999999999888
Q ss_pred eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE-EEEeCCCcEE
Q 003467 105 QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV-ALACDDGCVR 183 (817)
Q Consensus 105 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~ 183 (817)
..+. .+.+++|+|++. +| +++..++.|+
T Consensus 71 ~~~~-~v~~~~~spdg~--------------------------------------------------~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 71 PAGS-SPQGVAVSPDGK--------------------------------------------------QVYVTNMASSTLS 99 (391)
T ss_dssp ECSS-SEEEEEECTTSS--------------------------------------------------EEEEEETTTTEEE
T ss_pred ECCC-CccceEECCCCC--------------------------------------------------EEEEEECCCCEEE
Confidence 8655 899999999983 55 4556779999
Q ss_pred EEEecCCCceeEeeccCCccceEEEEEEccCCCEE-EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 184 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML-YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 184 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l-~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
+||+.+++.+ ..+.. ...+.+++|+|++++| ++++.|+.|++||+.+++.+..+. ....+.+++|+
T Consensus 100 v~d~~~~~~~---~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~ 166 (391)
T 1l0q_A 100 VIDTTSNTVA---GTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVT 166 (391)
T ss_dssp EEETTTTEEE---EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEEC
T ss_pred EEECCCCeEE---EEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cCCCcceEEEC
Confidence 9999876554 33333 3468999999999987 678889999999999999888876 23456899999
Q ss_pred cCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc---cCCcEEEEEeecccCCCCCCCCCc
Q 003467 263 RCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG---SDGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 263 ~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
|++ .+ ++++.++.|++||+++++.+..+.. ...+.+++|+|++++|++++ .++.|++||+.+++
T Consensus 167 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---------- 235 (391)
T 1l0q_A 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---------- 235 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE----------
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe----------
Confidence 999 44 6788899999999999988877764 56889999999999999988 68999999998776
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEE-EEecCCCeEEEEeCC
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML-ISAGDDTKLFAYCAN 416 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~~~~~~ 416 (817)
.+..+..|. .+.+++++ |+++ .| ++++.|+.|++||+.
T Consensus 236 -------~~~~~~~~~-~~~~~~~s---------~dg~------------------------~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 236 -------ITARIPVGP-DPAGIAVT---------PDGK------------------------KVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -------EEEEEECCS-SEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEEETT
T ss_pred -------EEEEEecCC-CccEEEEc---------cCCC------------------------EEEEEcCCCCEEEEEECC
Confidence 455555554 46788887 7775 55 788999999999998
Q ss_pred ccccc
Q 003467 417 EFTKF 421 (817)
Q Consensus 417 ~~~~~ 421 (817)
+....
T Consensus 275 ~~~~~ 279 (391)
T 1l0q_A 275 TNTIT 279 (391)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76543
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.3e-28 Score=265.30 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=230.9
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEE-----EEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQL-----TVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~-----~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
..+.+++|+|+++++++++.++.|.+||+.+++ ... .+.+| ...|.+++|+|++.+ +++++.|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~------~~s~~~d~ 191 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ----TVRLSPPEKYKKK-LGFVETISIPEHNEL------WVSQMQAN 191 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC----EEEECCCHHHHTT-CCEEEEEEEGGGTEE------EEEEGGGT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe----EeeecCccccccc-CCceeEEEEcCCCEE------EEEECCCC
Confidence 456699999988888888888999999999887 333 23355 789999999999987 99999999
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 224 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD----------------------------------------------- 224 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTT-----------------------------------------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC-----------------------------------------------
Confidence 999999999999999999999999999999983
Q ss_pred cCCEE-EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEee--------CCCcEEEEECCCCceEE
Q 003467 169 EDRRV-ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS--------SDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 169 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~--------~dg~i~vwd~~~g~~~~ 239 (817)
.+ ++++.++.|++||+.++... ..+.. ...+.+++|+|+|++|++++ .||.|++||+.+++.+.
T Consensus 225 ---~l~~~~~~~~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 225 ---LVYCSNWISEDISVIDRKTKLEI---RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp ---EEEEEETTTTEEEEEETTTTEEE---EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred ---EEEEEecCCCcEEEEECCCCcEE---EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 55 55668999999999866544 44444 34699999999999999988 58899999999998777
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCC-e-EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc---
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS--- 314 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~--- 314 (817)
.+. +...+.+++|+|++ . +++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++.
T Consensus 298 ~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 298 TIG---------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp EEE---------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred ecc---------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence 664 55678899999999 3 5677999999999999999888876 6788999999999999998876
Q ss_pred ------------CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCC
Q 003467 315 ------------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 382 (817)
Q Consensus 315 ------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (817)
||.|++||+.+++ .+..+.. ...+.+++++ |+++
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~-----------------~~~~~~~-~~~~~~~~~s---------~dg~------- 413 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDT-----------------VKEFWEA-GNQPTGLDVS---------PDNR------- 413 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTE-----------------EEEEEEC-SSSEEEEEEC---------TTSC-------
T ss_pred ccccccccccccceEEEEEECCCCc-----------------EEEEecC-CCCCceEEEc---------CCCC-------
Confidence 5799999998776 4444444 4468899997 8876
Q ss_pred CCCccccccccccCCCcEEEEec-CCCeEEEEeCCc
Q 003467 383 EKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANE 417 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~~~~~~~ 417 (817)
+|++++ .|+.|++|++..
T Consensus 414 -----------------~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 414 -----------------YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -----------------EEEEEETTTTEEEEEEETT
T ss_pred -----------------EEEEEECCCCeEEEEEecC
Confidence 777665 599999999864
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=8.4e-30 Score=269.33 Aligned_cols=248 Identities=12% Similarity=0.092 Sum_probs=181.4
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCc-EEEEEEcCCCCCcEEEEEEee--------cCCCCCCCceEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGW-HCQLTVHGDPKSRISSLVWCH--------AGKMGLPGGRLFS 83 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~g~~~~~V~~l~~s~--------~~~~~~~~~~l~s 83 (817)
...+...++++++++||+|+.|++|+|||..+++... .....+.|| .+.|.+|+|+| |+++ |||
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~------las 161 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQV------IAS 161 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEE------EEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCE------EEE
Confidence 3344445556677899999999999999998875311 112234566 89999999998 6766 999
Q ss_pred eeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 84 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
+|.|++|++||+.++.+...+..|..+|.+++|+|++.
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~------------------------------------------ 199 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP------------------------------------------ 199 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE------------------------------------------
T ss_pred EECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC------------------------------------------
Confidence 99999999999999999988889999999999999873
Q ss_pred ccccccCCEEEEEeCCCcEEEEEecCCCceeE----------------------eeccCCccceEEEEEEc-cCCCEEEE
Q 003467 164 EQSVVEDRRVALACDDGCVRIYRITDSDELIY----------------------HRSLPRVSGRVLSVTWS-ADGNMLYS 220 (817)
Q Consensus 164 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------~~~~~~h~~~v~~v~~s-~dg~~l~s 220 (817)
.+|++|+.||.|++||+.++..... .....+|...|.+++|+ ||++.|++
T Consensus 200 -------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 200 -------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp -------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE
T ss_pred -------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE
Confidence 2799999999999999986543211 01234678889999986 89999999
Q ss_pred eeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEE------------------eEEec--CC-eEEEEcCCCcEEEE
Q 003467 221 GSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS------------------LLSLR--CG-TLVSADSTGSVQFW 279 (817)
Q Consensus 221 ~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~------------------v~~~~--~~-~l~s~~~dg~i~iw 279 (817)
++.|+++++||+.+++....+.. +...+.. ..+.+ ++ .+++|+.||.|++|
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISD--------STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp ECTTSEEEEEEC---------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEECccCCCCceEee--------ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 99999999999998877666552 2222222 23333 33 46788899999999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
|..+++++..+..|...|.+++|+|||++|++++.+| +.+|++..
T Consensus 345 d~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 345 NTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred ECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 9999999988889999999999999999999997665 77777654
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.1e-29 Score=268.38 Aligned_cols=312 Identities=14% Similarity=0.062 Sum_probs=199.2
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC----CcEEEEEEcCCCCCcEEEEEEeecCCC------------
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS----GWHCQLTVHGDPKSRISSLVWCHAGKM------------ 74 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~g~~~~~V~~l~~s~~~~~------------ 74 (817)
.+|..+.....+|++..|+.++.++.|.+|+...... .........-++...+..+.|++....
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 3344444333456655555555678899998653211 111111111112345666665532110
Q ss_pred --CCCCceEEEeeCCCeEEEEECCCCeEEE-----EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 75 --GLPGGRLFSSSIDGSVSEWDLYDLKQKI-----VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 75 --~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
......|++++.|++|++||+.++.... .+.+|.+.|++++|+|.....
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~------------------------ 151 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD------------------------ 151 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT------------------------
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc------------------------
Confidence 0001249999999999999999887543 356899999999999832100
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCC-EEEEeeCCCc
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGY 226 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~ 226 (817)
...++++||+|+.|++|+|||+.++..+ ..+.+|...|.+++|+|++. +|++|+.||+
T Consensus 152 ------------------~~~d~~~las~s~D~tv~~Wd~~~~~~~---~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 152 ------------------NRLAEQVIASVGDDCTLIIWRLTDEGPI---LAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp ------------------CSEEEEEEEEEETTSEEEEEEEETTEEE---EEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ------------------cCCCCCEEEEEECCCeEEEEECCCCcee---eeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 0011259999999999999999866655 56667889999999999875 7999999999
Q ss_pred EEEEECCCCceEEEEEeecC-----------------CCCCCCceeEEEeEEe-cCC-eEEEEcCCCcEEEEeCCCCeEE
Q 003467 227 IRSWDAKLGYEIYRITVGLG-----------------GLGSGPELCIWSLLSL-RCG-TLVSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 227 i~vwd~~~g~~~~~~~~~~~-----------------~~~~~~~~~v~~v~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~ 287 (817)
|++||+.+++.......... ....+|...+.++.|. +|+ .+++++.|+++++||+.+++..
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~ 290 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY 290 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence 99999998876554432110 0123577788889887 677 7999999999999999988777
Q ss_pred EEeecCccCeeEEEEec--------------------CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEee
Q 003467 288 QAHSFHKGDVNALAAAP--------------------SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 347 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~--------------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (817)
..+..|...+..+.+.| ++.++++|+.||.|++||..++. ...
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-----------------~~~ 353 (393)
T 4gq1_A 291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-----------------SNS 353 (393)
T ss_dssp -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-----------------CCE
T ss_pred ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-----------------EEE
Confidence 77666655554444433 33356778889999999998876 455
Q ss_pred ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 348 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 348 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
....|...|++++|+ |+|+ +|++++.+| +.+|.+..+
T Consensus 354 ~~~~~~~~V~svafs---------pdG~------------------------~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 354 IPIQLGMPIVDFCWH---------QDGS------------------------HLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp EEEECSSCEEEEEEC---------TTSS------------------------EEEEEESSE-EEEEEEGGG
T ss_pred EecCCCCcEEEEEEc---------CCCC------------------------EEEEEeCCC-eEEEEEeCc
Confidence 667788899999998 8887 999998666 666655443
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=263.97 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=127.7
Q ss_pred CEE-EEEeCCCcEEEEEec--CCCceeEeeccC--CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEE----EE
Q 003467 171 RRV-ALACDDGCVRIYRIT--DSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY----RI 241 (817)
Q Consensus 171 ~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~----~~ 241 (817)
++| ++++.||.|+|||+. ++..+ ..+. .|...|.+++|+|++++|++|+.||.|++|++.++.... .+
T Consensus 115 ~~l~~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~ 191 (450)
T 2vdu_B 115 SRLIACADSDKSLLVFDVDKTSKNVL---KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI 191 (450)
T ss_dssp SEEEEEEGGGTEEEEEEECSSSSSCE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS
T ss_pred CEEEEEECCCCeEEEEECcCCCCcee---eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee
Confidence 565 899999999999998 66655 3443 567899999999999999999999999999998877543 33
Q ss_pred EeecCCCCCCCceeEEEeEEecC---C-eEEEEcCCCcEEEEeCCCCeEEEE-eecCccCeeEEEEecCCCEEEEEccCC
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRC---G-TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~---~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
. +|...|.+++|+|+ + .|++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|++++.|+
T Consensus 192 ~--------~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~ 262 (450)
T 2vdu_B 192 L--------GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD 262 (450)
T ss_dssp E--------ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS
T ss_pred e--------cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC
Confidence 3 58889999999999 8 799999999999999999988877 56899999999999 999999999999
Q ss_pred cEEEEEeeccc
Q 003467 317 QVILYKASCES 327 (817)
Q Consensus 317 ~i~iw~~~~~~ 327 (817)
.|++||+.+++
T Consensus 263 ~v~vwd~~~~~ 273 (450)
T 2vdu_B 263 KIFAWDWKTGK 273 (450)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 99999998876
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.7e-27 Score=249.41 Aligned_cols=309 Identities=10% Similarity=0.124 Sum_probs=230.1
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEE-EEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML-YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l-~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+++++.|+.|++||+.+++.+ ..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~---~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~------- 72 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVT---ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------- 72 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEE---EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-------
T ss_pred EEEEcCCCCEEEEEECCCCeEE---EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-------
Confidence 7888999999999999876554 4555554 58999999999987 6777899999999999999888872
Q ss_pred CCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEE-EEEccCCcEEEEEeeccc
Q 003467 251 GPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYKASCES 327 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~~~~~dg~i~iw~~~~~~ 327 (817)
+ ..+.+++|+|++ .+ +++..++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.|+.|++||+.+++
T Consensus 73 -~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 149 (391)
T 1l0q_A 73 -G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (391)
T ss_dssp -S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred -C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 3 389999999999 44 56667899999999999998888754 578999999999988 677889999999998765
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
.+..+..| ..+.+++++ |+++ .++++++.+
T Consensus 150 -----------------~~~~~~~~-~~~~~~~~~---------~dg~-----------------------~l~~~~~~~ 179 (391)
T 1l0q_A 150 -----------------VINTVSVG-RSPKGIAVT---------PDGT-----------------------KVYVANFDS 179 (391)
T ss_dssp -----------------EEEEEECC-SSEEEEEEC---------TTSS-----------------------EEEEEETTT
T ss_pred -----------------EEEEEecC-CCcceEEEC---------CCCC-----------------------EEEEEeCCC
Confidence 34444443 335666665 5554 133566677
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 487 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 487 (817)
+.|++||+.+..
T Consensus 180 ~~v~~~d~~~~~-------------------------------------------------------------------- 191 (391)
T 1l0q_A 180 MSISVIDTVTNS-------------------------------------------------------------------- 191 (391)
T ss_dssp TEEEEEETTTTE--------------------------------------------------------------------
T ss_pred CEEEEEECCCCe--------------------------------------------------------------------
Confidence 777777765311
Q ss_pred ecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe---cCCcE
Q 003467 488 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG---HDRRI 564 (817)
Q Consensus 488 ~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~---~dg~i 564 (817)
... .. .+...+.+++|+|++++|++++ .++.|
T Consensus 192 ---------------------------------------~~~---~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 192 ---------------------------------------VID---TV---KVEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp ---------------------------------------EEE---EE---ECSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred ---------------------------------------EEE---EE---ecCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 000 00 0112567889999999999888 68999
Q ss_pred EEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEE-EEEeCCCcEEEEECCCcceEEEEecCCCCCe---E
Q 003467 565 YVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVNCFGDVYIFNLEIQRQHWFISRLEGASV---T 640 (817)
Q Consensus 565 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i---~ 640 (817)
++||+.+++.+..+.. ...+.+++|+|||++| ++++.|+.|++||+++++....++.... +. .
T Consensus 227 ~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~ 293 (391)
T 1l0q_A 227 SMIDTGTNKITARIPV------------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN-PYASGQ 293 (391)
T ss_dssp EEEETTTTEEEEEEEC------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EECCSS
T ss_pred EEEECCCCeEEEEEec------------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC-CCccce
Confidence 9999999998888875 3458899999999988 5668899999999999988777654321 11 0
Q ss_pred EEE------------ecCCCC----------CeEEEEecCCeEEEEEcCCCcc
Q 003467 641 AAG------------FPPQNN----------NVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 641 ~l~------------~sp~d~----------~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
.+. |+. +. -.+...+.|..+++|++..+..
T Consensus 294 ~~~~~~~~~~~~~a~fs~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 294 FIGSIPVQPVYPSADFKS-NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CEEECSSCCCCCBCCEEE-SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred eeeccccccccccccccc-ccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 122 222 11 2344455678899999987763
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=7.2e-28 Score=236.18 Aligned_cols=263 Identities=12% Similarity=0.062 Sum_probs=184.8
Q ss_pred eEEEEECCCCC---eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCC-------------------------cEEEEE
Q 003467 16 VVALATSADDS---QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKS-------------------------RISSLV 67 (817)
Q Consensus 16 I~~la~spdg~---~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~-------------------------~V~~l~ 67 (817)
+.++-+-.-|- -++++++ ..|++|+..++ ..|.+..+.++| +. .|.+|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDA-WQWEKLYTWHFA-EVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSS-SBEEEEEEEECC-SSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCC-ccceeeEEEecc-CceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 44454544333 5777876 68999999987 367788888887 43 566666
Q ss_pred Eeec----CCCCCCCceEEEeeCCCeEEEEECCCCeEEEE-EeecCceEEEEeeecCCCccceeeccCccccCccccCCC
Q 003467 68 WCHA----GKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKS 142 (817)
Q Consensus 68 ~s~~----~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (817)
|+|| +++ +++++. .+.+|++.+++.+.+ ..+|...|..++++|+|..+........
T Consensus 119 ~spd~~~~~~~------l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~----------- 179 (356)
T 2w18_A 119 CSSDDESEKQV------LLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP----------- 179 (356)
T ss_dssp C------CCEE------EEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-----------
T ss_pred ECCCccccccE------EEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-----------
Confidence 7777 554 777764 478899988888877 4678899999999888854321110000
Q ss_pred CCCCCccccccCCCCCCcccccccc--ccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc---cceEEEEEEccCCCE
Q 003467 143 NDSDDHETSESENDSDSDELHEQSV--VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV---SGRVLSVTWSADGNM 217 (817)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h---~~~v~~v~~s~dg~~ 217 (817)
.......+. .++.+||+++.|++|+|||+.+++.+ +++.+| ...+.+++|+|+|.+
T Consensus 180 ----------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l---~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 180 ----------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL---KKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp ----------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE---EEEECCC---CCCEEEEEEETTEE
T ss_pred ----------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE---EEEcCCCcceeeeEEEEECCCCCE
Confidence 000111111 24579999999999999999988877 556554 346788899999998
Q ss_pred E------------EEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCe
Q 003467 218 L------------YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 218 l------------~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (817)
+ ++|+.|++|++||..+++.+..+.... ..+|...+.+..++ ...+++++.|++|+|||+.+++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCS
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCc
Confidence 6 567889999999999999887664321 11344444444444 3378999999999999999999
Q ss_pred EEEEeecCccCee-EEEEecCCCEEEEEccCCcEEEEEe
Q 003467 286 LLQAHSFHKGDVN-ALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 286 ~~~~~~~h~~~v~-~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
+++++.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999987655 6899999999999999999999986
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.7e-28 Score=249.80 Aligned_cols=278 Identities=9% Similarity=0.046 Sum_probs=209.3
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC---
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR--- 282 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~--- 282 (817)
.....+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.++|+ +++++.|++|++|+..
T Consensus 39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp EECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS--EEEECSTTEEEEEETTTEE
T ss_pred hhhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc--eEEecCCCeEEEEEccCce
Confidence 3444566788999999999999999999999888875 245667778887 9999999999999665
Q ss_pred ------CCeEEEEee-cCccCeeEEEEec--CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc-ccC
Q 003467 283 ------HGTLLQAHS-FHKGDVNALAAAP--SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV-RAH 352 (817)
Q Consensus 283 ------~~~~~~~~~-~h~~~v~~l~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h 352 (817)
+++.+..+. .|...|.+++|+| +++++++++.||.|++||+.++. ..... ..|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------~~~~~~~~~ 169 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------QYIVHSAKS 169 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------EEEEECCCS
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------EEEEEecCC
Confidence 555455554 6778899999999 99999999999999999998876 33333 334
Q ss_pred CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCC
Q 003467 353 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR 432 (817)
Q Consensus 353 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~ 432 (817)
...+.+++|+ |++. +|++|+.|+.|++||+.+....
T Consensus 170 ~~~i~~~~~~---------pdg~------------------------~lasg~~dg~i~iwd~~~~~~~----------- 205 (343)
T 3lrv_A 170 DVEYSSGVLH---------KDSL------------------------LLALYSPDGILDVYNLSSPDQA----------- 205 (343)
T ss_dssp SCCCCEEEEC---------TTSC------------------------EEEEECTTSCEEEEESSCTTSC-----------
T ss_pred CCceEEEEEC---------CCCC------------------------EEEEEcCCCEEEEEECCCCCCC-----------
Confidence 5568888887 7765 8888888888888887642200
Q ss_pred CceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCC
Q 003467 433 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV 512 (817)
Q Consensus 433 ~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~ 512 (817)
T Consensus 206 -------------------------------------------------------------------------------- 205 (343)
T 3lrv_A 206 -------------------------------------------------------------------------------- 205 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCceEEEeeecCCc-cccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCC
Q 003467 513 KPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 591 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 591 (817)
. ..+.. |...|++++|+|++.+|++++ ++.|++||+.+++.+.++.....
T Consensus 206 --------------~------~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~-------- 256 (343)
T 3lrv_A 206 --------------S------SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI-------- 256 (343)
T ss_dssp --------------C------EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--------
T ss_pred --------------c------cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc--------
Confidence 0 01222 556899999999999999999 55999999998877666654211
Q ss_pred CCCce--eEEEEccCCCEEEEEeC-CCcEEEEECCCcceEEEEecCCCCCeEEEEecC--CCCCeEEEEecCCeEEEEEc
Q 003467 592 SEPPI--TKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP--QNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 592 ~~~~i--~~l~~s~dg~~la~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp--~d~~~l~~~~~d~~i~vwd~ 666 (817)
|...+ .+++|+|+|++|++++. |+.|+||+++.....+.. .++..++|+| .+...|++++.|+.+.++-.
T Consensus 257 ~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 257 PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp -----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 23333 46999999999999998 999999999777655544 3677888886 35568999999999988765
Q ss_pred CCCc
Q 003467 667 EAKQ 670 (817)
Q Consensus 667 ~~~~ 670 (817)
....
T Consensus 332 ~~~~ 335 (343)
T 3lrv_A 332 TNDS 335 (343)
T ss_dssp CSSE
T ss_pred cCCe
Confidence 5443
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.5e-27 Score=256.33 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=217.7
Q ss_pred EECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEEC--CC
Q 003467 20 ATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDL--YD 97 (817)
Q Consensus 20 a~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~--~~ 97 (817)
+|+|++.++++++.+++|.+||..+++ +..++..++. +.+++|+|||++ |++++.|++|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~----~~~~i~~g~~--~~~v~~spdg~~------l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK----IVKVIDTGYA--VHISRMSASGRY------LLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC----EEEEEECSTT--EEEEEECTTSCE------EEEEETTSEEEEEETTSSS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce----EEEEEecCcc--cceEEECCCCCE------EEEECCCCeEEEEECcCCC
Confidence 489999999999999999999999987 5777774433 899999999998 999999999999999 89
Q ss_pred CeEEEEEeecCceEEEEeeec----CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 98 LKQKIVLQSIDFSIWQMAVAP----SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
++++.++. ++.....++|+| ++ +++
T Consensus 212 ~~~~~~i~-~g~~p~~va~sp~~~~dg--------------------------------------------------~~l 240 (543)
T 1nir_A 212 PTKVAEIK-IGIEARSVESSKFKGYED--------------------------------------------------RYT 240 (543)
T ss_dssp CEEEEEEE-CCSEEEEEEECCSTTCTT--------------------------------------------------TEE
T ss_pred CcEEEEEe-cCCCcceEEeCCCcCCCC--------------------------------------------------CEE
Confidence 99998888 566789999999 88 477
Q ss_pred EEEe-CCCcEEEEEecCCCceeEeeccC-------Cccc-eEEEEEEccCCCE-EEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 174 ALAC-DDGCVRIYRITDSDELIYHRSLP-------RVSG-RVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 174 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------~h~~-~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
++++ .++.|.+||..+++.+....... .|.. ++.++.++|++.. +++...++.|.+||+.+++.+.....
T Consensus 241 ~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 241 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 7777 48999999998776653322110 0333 7999999998765 55666789999999988776552222
Q ss_pred ecCCCCCCCceeEEEeEEecCCe-E-EEEcCCCcEEEEeCCCCeEEEEeec----CccCeeEEEEecC-CCEEEEEc-cC
Q 003467 244 GLGGLGSGPELCIWSLLSLRCGT-L-VSADSTGSVQFWDSRHGTLLQAHSF----HKGDVNALAAAPS-HNRVFSTG-SD 315 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~~-l-~s~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~s~~-~~~l~~~~-~d 315 (817)
.+...+..+.|+|+|+ + +++..+++|.+||..+++++..+.. |.+....+ ++|+ +..++++. .|
T Consensus 321 -------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 321 -------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD 392 (543)
T ss_dssp -------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred -------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC
Confidence 2345577899999993 4 4556689999999999999988874 54434333 4777 55555554 58
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
++|.+|+..+... ....|.++.++..|...+..++++ |+++
T Consensus 393 ~~V~v~d~~~~~~----------~~~~~~~v~~l~~~g~~~~~v~~~---------pdg~-------------------- 433 (543)
T 1nir_A 393 GSISLIGTDPKNH----------PQYAWKKVAELQGQGGGSLFIKTH---------PKSS-------------------- 433 (543)
T ss_dssp SEEEEEECCTTTC----------TTTBTSEEEEEECSCSCCCCEECC---------TTCC--------------------
T ss_pred ceEEEEEeCCCCC----------chhcCeEEEEEEcCCCCceEEEcC---------CCCC--------------------
Confidence 9999999987321 112355888899998888888887 8876
Q ss_pred CCCcEEEEec-------CCCeEEEEeCCcc
Q 003467 396 LGVPMLISAG-------DDTKLFAYCANEF 418 (817)
Q Consensus 396 ~~~~~l~s~~-------~dg~i~~~~~~~~ 418 (817)
.|+++. .+++|.+||+.+.
T Consensus 434 ----~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 434 ----HLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ----EEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred ----cEEEecCCCCCcccCceEEEEECCCC
Confidence 777776 2567888877653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=2.4e-26 Score=251.34 Aligned_cols=324 Identities=10% Similarity=0.073 Sum_probs=245.0
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeC--CCCeE
Q 003467 210 TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS--RHGTL 286 (817)
Q Consensus 210 ~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~--~~~~~ 286 (817)
+|+|++.++++++.|++|.+||..+++.+.++.. ++. +..++|+||| ++++++.++.|.+||+ .+++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-------GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-------STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-------Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 4889999999999999999999999999998873 233 8899999999 7888999999999999 88999
Q ss_pred EEEeecCccCeeEEEEec----CCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeecccc----------
Q 003467 287 LQAHSFHKGDVNALAAAP----SHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA---------- 351 (817)
Q Consensus 287 ~~~~~~h~~~v~~l~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 351 (817)
+.++.. ...+..++|+| ||+++++++. +++|.+||..+.+ ++..+..
T Consensus 215 ~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------------~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 215 VAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------------PKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------------EEEEEECCEECSSSCCE
T ss_pred EEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-----------------cceeecccCcccCcccc
Confidence 988874 56689999999 9999999885 8999999987766 4444433
Q ss_pred CC-CccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCC
Q 003467 352 HT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAP 430 (817)
Q Consensus 352 h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~ 430 (817)
|. ..+.++.++ |++. .++++...++.|.+||..+...+.
T Consensus 277 ~~~~~v~~i~~s---------~~~~-----------------------~~~vs~~~~g~i~vvd~~~~~~l~-------- 316 (543)
T 1nir_A 277 HPEPRVAAIIAS---------HEHP-----------------------EFIVNVKETGKVLLVNYKDIDNLT-------- 316 (543)
T ss_dssp ESCCCEEEEEEC---------SSSS-----------------------EEEEEETTTTEEEEEECTTSSSCE--------
T ss_pred ccCCceEEEEEC---------CCCC-----------------------EEEEEECCCCeEEEEEecCCCcce--------
Confidence 22 256677776 5543 478888899999999987533110
Q ss_pred CCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE-
Q 003467 431 QRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS- 509 (817)
Q Consensus 431 ~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~- 509 (817)
+. .+ .....+..++|+|+|++++++
T Consensus 317 ----------------------------~~------------------------~i--~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 317 ----------------------------VT------------------------SI--GAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp ----------------------------EE------------------------EE--ECCSSCCCEEECTTSCEEEEEE
T ss_pred ----------------------------eE------------------------Ee--ccCcCccCceECCCCCEEEEEe
Confidence 00 11 112456678899999976654
Q ss_pred -cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecC-CCEEEEEe-cCCcEEEEEccC-------Cceeeeec
Q 003467 510 -DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAG-HDRRIYVVDVSS-------SELLHTFT 579 (817)
Q Consensus 510 -~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-~~~l~~~~-~dg~i~v~d~~~-------~~~~~~~~ 579 (817)
.+++|.+|++.. +..+..+.... ..|......+ ++|+ +..++++. .|++|.+||+.+ +++++++.
T Consensus 343 ~~~~~v~v~D~~t---g~l~~~i~~g~-~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 343 NNSNKVAVIDSKD---RRLSALVDVGK-TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp GGGTEEEEEETTT---TEEEEEEECSS-SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred cCCCeEEEEECCC---CeEEEeeccCC-CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 468999999865 33322222111 1122222222 5787 55566654 579999999988 89999999
Q ss_pred cCcccccccCCCCCCceeEEEEccCCCEEEEEe-------CCCcEEEEECCCcceE-EEEec-------CCCCCeEEEEe
Q 003467 580 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-------CFGDVYIFNLEIQRQH-WFISR-------LEGASVTAAGF 644 (817)
Q Consensus 580 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-------~dg~i~vwd~~~~~~~-~~~~~-------~~~~~i~~l~~ 644 (817)
. |...+..+++||||++|++++ .+++|.|||+++++.. ..++. .+...+..++|
T Consensus 418 ~-----------~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 418 G-----------QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp C-----------SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred c-----------CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 8 778889999999999999987 3779999999999876 44421 23468999999
Q ss_pred cCCCCCeEEEEe-----cCCeEEEEEcCCCcc
Q 003467 645 PPQNNNVLIITT-----SSNQVYVFDVEAKQL 671 (817)
Q Consensus 645 sp~d~~~l~~~~-----~d~~i~vwd~~~~~~ 671 (817)
+| +|+.|+++. .|+.|.|||.+++++
T Consensus 487 ~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 487 NK-RGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CS-SSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CC-CCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 99 999888773 479999999999986
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.9e-26 Score=226.17 Aligned_cols=286 Identities=11% Similarity=0.102 Sum_probs=196.5
Q ss_pred EEEEEEeec-CCCCCCCceEEEeeCCCeEEEEECCCC---eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 63 ISSLVWCHA-GKMGLPGGRLFSSSIDGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 63 V~~l~~s~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
+.++-|-.. .+. .-+++++. .+|++|+..++ +.++++..|..+|..+++.||..++++.....-+......
T Consensus 42 ~~~~~~~~~~~~~----~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s 116 (356)
T 2w18_A 42 VSAMFWERAGCKE----PCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA 116 (356)
T ss_dssp EEEEEEC----CE----EEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE
T ss_pred EeeeeeccCCCCc----cEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE
Confidence 455555333 332 34666765 57999999999 8999999999999999999998888776554432211111
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc---
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--- 213 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--- 213 (817)
-....+...........+ .....-.++.++++.+++ .|+.|++|++....... ..+..|...+..++|++
T Consensus 117 la~spd~~~~~~~l~s~g---~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~--~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 117 LFCSSDDESEKQVLLKSG---NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK--ENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp ECC------CCEEEEEEE---EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE--EEEEECCCSSCEEEEEEEET
T ss_pred EEECCCccccccEEEeCC---CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee--eeeccCCCceeeEEeeccCC
Confidence 010000000000000001 001111234444444433 49999999996433322 56668888888889988
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-E------------EEEcCCCcEEEEe
Q 003467 214 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-L------------VSADSTGSVQFWD 280 (817)
Q Consensus 214 dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l------------~s~~~dg~i~iwd 280 (817)
++.+|++++.|++|+|||+.+|+++..+..+. .+...+.+++|+|+|. + ++|+.|++|++||
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-----~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-----SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC--------CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCC-----cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 77999999999999999999999999997310 1234677889999994 3 5678899999999
Q ss_pred CCCCeEEEEe-----ecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 281 SRHGTLLQAH-----SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 281 ~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
..+++.+..+ .+|...+.+..++ +..+++++.|++|++||+.+++ ++.++.+|...
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk-----------------~l~tL~gH~~~ 327 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ-----------------CTALLPPVSDQ 327 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS-----------------EEEEECCC--C
T ss_pred CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc-----------------EEEEecCCCCC
Confidence 9999988765 3666665544444 8889999999999999999998 78889999877
Q ss_pred cc-eeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeC
Q 003467 356 VR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA 415 (817)
Q Consensus 356 v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~ 415 (817)
+. +++|+ |+++ +|++|+.|++|++||+
T Consensus 328 vvs~vafS---------PDG~------------------------~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWS---------GTDS------------------------HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEEC---------SSSS------------------------EEEEECTTSCEEEEEE
T ss_pred eEEEEEEC---------CCCC------------------------EEEEEECCCcEEEecC
Confidence 66 58998 8887 9999999999999985
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=5.6e-26 Score=241.22 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=216.6
Q ss_pred cceEEEEEEccCCC-EEEEee----CCC----cEEEEEC--CCCceEEEEEeecCCCCCCCceeEEEeEEec--------
Q 003467 203 SGRVLSVTWSADGN-MLYSGS----SDG----YIRSWDA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLR-------- 263 (817)
Q Consensus 203 ~~~v~~v~~s~dg~-~l~s~~----~dg----~i~vwd~--~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~-------- 263 (817)
...+...+|.+.|. .+++|+ .|| .|++||+ .+++.+...... ++...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK------VNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE------ECGGGHHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE------cChhHHHHHHHHHHHHHHHHH
Confidence 35777888988886 555776 467 8999999 999887443221 4666666666654
Q ss_pred -------CCeEEEEcCC------CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC---cEEEEEeeccc
Q 003467 264 -------CGTLVSADST------GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG---QVILYKASCES 327 (817)
Q Consensus 264 -------~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg---~i~iw~~~~~~ 327 (817)
+.+++.++.+ +.|++||+. +.....+..|...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 4466665554 789999998 556778888999999999999999999998875 99999998765
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEE-EecC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI-SAGD 406 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~ 406 (817)
. ..+..|...+.+++|+ ||++ .|+ +++.
T Consensus 215 -----------------~-~~l~~~~~~~~~~~~s---------pdg~------------------------~la~~~~~ 243 (415)
T 2hqs_A 215 -----------------V-RQVASFPRHNGAPAFS---------PDGS------------------------KLAFALSK 243 (415)
T ss_dssp -----------------E-EEEECCSSCEEEEEEC---------TTSS------------------------EEEEEECT
T ss_pred -----------------E-EEeecCCCcccCEEEc---------CCCC------------------------EEEEEEec
Confidence 1 1233344444455554 4443 333 3333
Q ss_pred CCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeee
Q 003467 407 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 486 (817)
Q Consensus 407 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~ 486 (817)
++.
T Consensus 244 ~g~----------------------------------------------------------------------------- 246 (415)
T 2hqs_A 244 TGS----------------------------------------------------------------------------- 246 (415)
T ss_dssp TSS-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 222
Q ss_pred eecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec-CC--c
Q 003467 487 KSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--R 563 (817)
Q Consensus 487 ~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-dg--~ 563 (817)
..|++|++.. +.. ..+..+...+.+++|+|||++|++++. ++ .
T Consensus 247 -------------------------~~i~~~d~~~---~~~------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 247 -------------------------LNLYVMDLAS---GQI------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp -------------------------CEEEEEETTT---CCE------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred -------------------------ceEEEEECCC---CCE------EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 1233333322 111 123344456888999999999998876 44 6
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCCeE
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVT 640 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~i~ 640 (817)
|++||+.+++. ..+.. +...+.+++|||||++|++++.+ ..|++||+++++.. .+.. + ..+.
T Consensus 293 i~~~d~~~~~~-~~l~~-----------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~-~-~~~~ 357 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITW-----------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS-T-FLDE 357 (415)
T ss_dssp EEEEETTSSCC-EECCC-----------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC-S-SSCE
T ss_pred EEEEECCCCCE-EEEec-----------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC-C-CCcC
Confidence 88889887764 33443 56789999999999999998864 58999999998864 3332 3 3799
Q ss_pred EEEecCCCCCeEEEEecCC---eEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCC
Q 003467 641 AAGFPPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 701 (817)
Q Consensus 641 ~l~~sp~d~~~l~~~~~d~---~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~ 701 (817)
+++|+| ++++|++++.++ .|++||++++. ...+..|.+.|..++|+|.
T Consensus 358 ~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~------------~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 358 TPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF------------KARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEEECT-TSSEEEEEEEETTEEEEEEEETTSCC------------EEECCCSSSEEEEEEECCC
T ss_pred CeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc------------EEEeeCCCCCCcCCccccc
Confidence 999999 999999998877 89999998765 4568889999999999996
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=5.7e-25 Score=233.43 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=156.1
Q ss_pred CcEEEEEEeecCCCCCCCceEEEee----CCC----eEEEEEC--CCCeEE--EEEeecCceEEEEeeecCCCccceeec
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSS----IDG----SVSEWDL--YDLKQK--IVLQSIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
..+...+|.+.|.. .+++++ .|| +|++||+ .+++++ ..+.+|...+..+++++..... ...
T Consensus 63 ~~~~~~~w~~~g~~-----~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 135 (415)
T 2hqs_A 63 QEVQPAAWSALGID-----AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVF--EKL 135 (415)
T ss_dssp GGCCHHHHHTTTCC-----EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHH--HHH
T ss_pred cCcCHHHHHhcCCC-----EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHH--HHH
Confidence 46777888888764 355765 467 8999999 999887 5588888888888877521000 000
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC------CcEEEEEecCCCceeEeeccCCc
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD------GCVRIYRITDSDELIYHRSLPRV 202 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~h 202 (817)
.+. ....+..++.++.+ +.|++||+.. ... +.+.+|
T Consensus 136 ~g~----------------------------------~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~---~~l~~~ 177 (415)
T 2hqs_A 136 TGI----------------------------------KGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ---FVVHRS 177 (415)
T ss_dssp HSS----------------------------------CCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSC---EEEEEE
T ss_pred cCC----------------------------------CCcCCCEEEEEEecCCCCccceEEEEcCCC-CCC---EEEeCC
Confidence 000 00001366666554 7999999974 344 667789
Q ss_pred cceEEEEEEccCCCEEEEeeCCC---cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEE-EEcCCCc--
Q 003467 203 SGRVLSVTWSADGNMLYSGSSDG---YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGS-- 275 (817)
Q Consensus 203 ~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-s~~~dg~-- 275 (817)
...|.+++|+|||++|++++.++ .|++||+.+++.. .+. .+...+.+++|+||| .|+ +++.++.
T Consensus 178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~--------~~~~~~~~~~~spdg~~la~~~~~~g~~~ 248 (415)
T 2hqs_A 178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA--------SFPRHNGAPAFSPDGSKLAFALSKTGSLN 248 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE--------CCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee--------cCCCcccCEEEcCCCCEEEEEEecCCCce
Confidence 99999999999999999999875 9999999998775 344 466789999999999 465 6666655
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc-CC--cEEEEEeeccc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DG--QVILYKASCES 327 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg--~i~iw~~~~~~ 327 (817)
|++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|.+|++.++.
T Consensus 249 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 249 LYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 99999998775 677788889999999999999988776 45 56666765543
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=5.3e-25 Score=254.46 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=186.2
Q ss_pred CCCceEEEEECCCCCeEEEEec-CC-----cEEEEecCCCCCCcEEEEEEcCCC-C----------------------Cc
Q 003467 12 KPSPVVALATSADDSQVAAARE-DG-----SLEIWLVSPGTSGWHCQLTVHGDP-K----------------------SR 62 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~-dg-----~i~iwd~~~~~~~~~~~~~~~g~~-~----------------------~~ 62 (817)
....|.+++|||||++||+++. |+ .|.+||+.+++ ....+..+. . ..
T Consensus 35 ~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 35 SGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ----TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp TCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC----EEEEECGGGTC--------------------CCEE
T ss_pred CCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc----eeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence 4678999999999999999988 88 89999999887 344443321 1 24
Q ss_pred EEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe--EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccC
Q 003467 63 ISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 63 V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
|.+++|||||++ |++++. +.|.+||+.++. ....+..+...+..++|+|||
T Consensus 111 v~~~~~SpDg~~------l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-------------------- 163 (741)
T 2ecf_A 111 IVDYQWSPDAQR------LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-------------------- 163 (741)
T ss_dssp SCCCEECTTSSE------EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS--------------------
T ss_pred cceeEECCCCCE------EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC--------------------
Confidence 889999999987 888876 899999999883 345667788899999999999
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccce---------------
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR--------------- 205 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--------------- 205 (817)
++|+.++ ++.|++||+.++... +....+...
T Consensus 164 ------------------------------~~la~~~-~~~i~~~d~~~g~~~---~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 164 ------------------------------GFVSFIR-GRNLWVIDLASGRQM---QLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp ------------------------------SEEEEEE-TTEEEEEETTTTEEE---ECCCCCCSSEEESCCCHHHHHHSC
T ss_pred ------------------------------CEEEEEe-CCcEEEEecCCCCEE---EeccCCccceeccccceeeeeccc
Confidence 4777776 468999999865433 222233222
Q ss_pred -EEEEEEccCCCEEEEeeCCC---------------------------------cEEEEECCC-CceEEEEEeecCCCCC
Q 003467 206 -VLSVTWSADGNMLYSGSSDG---------------------------------YIRSWDAKL-GYEIYRITVGLGGLGS 250 (817)
Q Consensus 206 -v~~v~~s~dg~~l~s~~~dg---------------------------------~i~vwd~~~-g~~~~~~~~~~~~~~~ 250 (817)
+.+++|+|||++|++++.|+ .|.+||+.+ ++....... .
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------~ 283 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG------K 283 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC------S
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC------C
Confidence 47899999999999998775 789999988 775432210 1
Q ss_pred CCceeEEEeEEecCC-eEEEEcC-----CCcEEEEeCCCCeEEEEeecCcc----CeeEEEEecCCCEEEEEccCCcEEE
Q 003467 251 GPELCIWSLLSLRCG-TLVSADS-----TGSVQFWDSRHGTLLQAHSFHKG----DVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~~-----dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
.+...+..++| ||| .|++++. +..|.+||+.+++....+..+.. .+..++|+|||+.+++++.||.+.+
T Consensus 284 ~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 284 EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEE
Confidence 37788999999 999 4655432 56799999999988777766543 4568999999998888888998888
Q ss_pred EEee
Q 003467 321 YKAS 324 (817)
Q Consensus 321 w~~~ 324 (817)
|.+.
T Consensus 363 ~~~~ 366 (741)
T 2ecf_A 363 YRID 366 (741)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8765
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.5e-24 Score=250.76 Aligned_cols=198 Identities=9% Similarity=0.026 Sum_probs=155.6
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeC-CC-----eEEEEECCCCeEEEEEeecCc------------------------
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSI-DG-----SVSEWDLYDLKQKIVLQSIDF------------------------ 109 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~~~~------------------------ 109 (817)
...|.+++|||||++ |++++. |+ +|.+||+.+++....+..+..
T Consensus 36 ~~~~~~~~~SpdG~~------la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR------VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEECTTSSE------EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCE
T ss_pred CCCCCCceEecCCCE------EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence 357999999999988 999988 88 999999999998877765533
Q ss_pred eEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC
Q 003467 110 SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD 189 (817)
Q Consensus 110 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 189 (817)
.|.+++|+||| ++|++++. +.|++||+.+
T Consensus 110 ~v~~~~~SpDg--------------------------------------------------~~l~~~~~-~~i~~~d~~~ 138 (741)
T 2ecf_A 110 GIVDYQWSPDA--------------------------------------------------QRLLFPLG-GELYLYDLKQ 138 (741)
T ss_dssp ESCCCEECTTS--------------------------------------------------SEEEEEET-TEEEEEESSS
T ss_pred CcceeEECCCC--------------------------------------------------CEEEEEeC-CcEEEEECCC
Confidence 37788888888 47777776 9999999986
Q ss_pred CC--ceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCce-------------
Q 003467 190 SD--ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL------------- 254 (817)
Q Consensus 190 ~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~------------- 254 (817)
+. .. ..+..|...+.+++|+|||++|++++. +.|++||+.+++...... .+..
T Consensus 139 ~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~--------~~~~~~~~g~~~~v~~~ 206 (741)
T 2ecf_A 139 EGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA--------DGSTTIGNGIAEFVADE 206 (741)
T ss_dssp CSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC--------CCCSSEEESCCCHHHHH
T ss_pred CCcceE---EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc--------CCccceeccccceeeee
Confidence 62 33 567788889999999999999999875 599999998876554332 1111
Q ss_pred ---eEEEeEEecCC-eEEEEcCCC---------------------------------cEEEEeCCC-CeEEEEee--cCc
Q 003467 255 ---CIWSLLSLRCG-TLVSADSTG---------------------------------SVQFWDSRH-GTLLQAHS--FHK 294 (817)
Q Consensus 255 ---~v~~v~~~~~~-~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~--~h~ 294 (817)
.+.+++|+||| .|++++.|+ .|.+||+.+ ++...... .|.
T Consensus 207 ~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 286 (741)
T 2ecf_A 207 EMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD 286 (741)
T ss_dssp HSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS
T ss_pred ccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc
Confidence 14779999999 577776654 789999988 77655443 477
Q ss_pred cCeeEEEEecCCCEEEEEcc-----CCcEEEEEeeccc
Q 003467 295 GDVNALAAAPSHNRVFSTGS-----DGQVILYKASCES 327 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~-----dg~i~iw~~~~~~ 327 (817)
..+..++| |||++|++++. +..|++||+.+++
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 88999999 99999997654 5678888877654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=8.2e-24 Score=243.86 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=171.3
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCC---cEEEEEEeecCCCCCCCceEEEeeCC----
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKS---RISSLVWCHAGKMGLPGGRLFSSSID---- 87 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~---~V~~l~~s~~~~~~~~~~~l~s~~~d---- 87 (817)
.+.+++|||||+++++ +.||+|.+||+.+++. ...+.++ .. .|.+++|||||++ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----~~~~~~~-~~~~~~v~~~~~SpDg~~------l~~~~~~~~~~ 85 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----TVLIEGK-KIESLRAIRYEISPDREY------ALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----EEEECTT-TTTTTTCSEEEECTTSSE------EEEEESCCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----EEEeccc-cccccccceEEECCCCCE------EEEEecCccce
Confidence 4678999999998877 6789999999999873 4555554 33 4999999999988 9988764
Q ss_pred -----CeEEEEECCCCeEEEEEe---ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 88 -----GSVSEWDLYDLKQKIVLQ---SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 88 -----~~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
+.|.+||+.+++. ..+. .|...+..++|||||
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG--------------------------------------- 125 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG--------------------------------------- 125 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST---------------------------------------
T ss_pred eecceeeEEEEECCCCce-EeccCCccccccccccEECCCC---------------------------------------
Confidence 7889999999886 3343 344458899999999
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc------------------eEEEEEEccCCCEEEEe
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG------------------RVLSVTWSADGNMLYSG 221 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------------------~v~~v~~s~dg~~l~s~ 221 (817)
+.||.++. +.|++||+.++.... ....+.. .+.+++|+|||++|+++
T Consensus 126 -----------~~la~~~~-~~i~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 126 -----------QQLIFIFE-NNIYYCAHVGKQAIR---VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp -----------TCEEEEET-TEEEEESSSSSCCEE---EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred -----------CEEEEEEC-CeEEEEECCCCceEE---EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 47777776 799999998765542 2222222 23789999999999998
Q ss_pred eCC-CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecC------c
Q 003467 222 SSD-GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFH------K 294 (817)
Q Consensus 222 ~~d-g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h------~ 294 (817)
+.| +.+.+|++..... .....+..+.|.++|.. ..+..|++||+.+++....+..+ .
T Consensus 191 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTG-------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp EEECTTSCEEEECCCSS-------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred EECCCccceEEeeccCC-------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 865 4677777642210 12234778888887742 33457999999988866666654 5
Q ss_pred cCeeEEEEecCCCEEEEEcc----CCcEEEEEeeccc
Q 003467 295 GDVNALAAAPSHNRVFSTGS----DGQVILYKASCES 327 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 327 (817)
..+..++|+|||++|++... +..|++||+.+++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 67899999999998877643 3579999988765
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.8e-23 Score=237.40 Aligned_cols=237 Identities=18% Similarity=0.161 Sum_probs=165.4
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC----------------CCcEEEEEEeecCCCC
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP----------------KSRISSLVWCHAGKMG 75 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~----------------~~~V~~l~~s~~~~~~ 75 (817)
.+..+..+.|+ |..+++++.+| | +||+.+++.. ...+..+. ...|.+++|||| +.
T Consensus 24 ~~~~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~---~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~- 94 (706)
T 2z3z_A 24 YPEYVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSA---QTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL- 94 (706)
T ss_dssp ----CTTCEEE--TTEEEEEETTE-E-EEEC----------CEEEEHHHHHTTC-----------CCCEEEEETTT-TE-
T ss_pred ccccCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEe---eEEeechhHhhhhccchhccccccccCceeEEECCC-Ce-
Confidence 34455667777 66677777777 8 9999988730 02222221 146999999999 54
Q ss_pred CCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 76 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
++.+ .++.|.+||+.+++.... ..+...+.+++|+|||
T Consensus 95 -----~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG----------------------------------- 132 (706)
T 2z3z_A 95 -----VVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVG----------------------------------- 132 (706)
T ss_dssp -----EEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTS-----------------------------------
T ss_pred -----EEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCC-----------------------------------
Confidence 4444 459999999999876544 4467788899999999
Q ss_pred CCCCccccccccccCCEEEEEeCCCcEEEEEecC-----CCceeEeeccCCccce--------------EEEEEEccCCC
Q 003467 156 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-----SDELIYHRSLPRVSGR--------------VLSVTWSADGN 216 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~h~~~--------------v~~v~~s~dg~ 216 (817)
+.|+.+ .++.|++|++.+ ++.. +....+... +.+++|+|||+
T Consensus 133 ---------------~~la~~-~~~~i~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 133 ---------------DRVAYV-RNHNLYIARGGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp ---------------SEEEEE-ETTEEEEEECBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred ---------------CEEEEE-ECCeEEEEecCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 467764 679999999987 5543 223333332 48999999999
Q ss_pred EEEEee---------------------------------CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec
Q 003467 217 MLYSGS---------------------------------SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR 263 (817)
Q Consensus 217 ~l~s~~---------------------------------~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 263 (817)
+|++++ .+..|++||+.+++...... ...+...+.+++|+|
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------GEPKEKFLTNLSWSP 267 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------CSCTTCEEEEEEECT
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------CCCCceeEeeEEEEC
Confidence 999987 44689999998887543321 114667899999999
Q ss_pred CC-eEEEEcCCC-----cEEEEeCCCCeEEEEee-c-Ccc---CeeEEEEec--CCCEEEEEccCCcEEEEEee
Q 003467 264 CG-TLVSADSTG-----SVQFWDSRHGTLLQAHS-F-HKG---DVNALAAAP--SHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 264 ~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~-~-h~~---~v~~l~~s~--~~~~l~~~~~dg~i~iw~~~ 324 (817)
|| .|++++.++ .|.+||..+++....+. . +.. .+..++|+| ||++++++..|+.+++|.+.
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 99 577766665 89999999984333332 2 222 246789999 99999999999999999887
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=5.6e-23 Score=236.86 Aligned_cols=375 Identities=9% Similarity=0.013 Sum_probs=239.1
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCc---eEEEEeeecCCCccceeeccCccccCcc
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDF---SIWQMAVAPSNSSLMHAVTNSDHIGNGY 137 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (817)
..+.+++|+|||++ +++ +.||+|++||+.+++....+..|.. .|.+++|||||
T Consensus 17 ~~~~~~~~spdg~~------~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg----------------- 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEF------IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR----------------- 72 (723)
T ss_dssp CCCCCCCBSSSSCB------CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-----------------
T ss_pred ccccccEEcCCCcE------EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-----------------
Confidence 34678899999987 766 7899999999999998888887765 49999999999
Q ss_pred ccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC---------CcEEEEEecCCCceeEeeccCCccceEEE
Q 003467 138 LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD---------GCVRIYRITDSDELIYHRSLPRVSGRVLS 208 (817)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 208 (817)
++|++++.+ +.|++||+.++.. .......+|...+.+
T Consensus 73 ---------------------------------~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 118 (723)
T 1xfd_A 73 ---------------------------------EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQY 118 (723)
T ss_dssp ---------------------------------SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSB
T ss_pred ---------------------------------CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccc
Confidence 467777654 7889999986654 222344556667899
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC-CCCC---------ceeEEEeEEecCC-eEEEEcCC-CcE
Q 003467 209 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL-GSGP---------ELCIWSLLSLRCG-TLVSADST-GSV 276 (817)
Q Consensus 209 v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~-~~~~---------~~~v~~v~~~~~~-~l~s~~~d-g~i 276 (817)
++|||||++|++++. +.|++||+.+++.......+.... ..++ ...+.+++|+||| .|++++.+ +.+
T Consensus 119 ~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (723)
T ss_dssp CCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred cEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc
Confidence 999999999999886 699999999887765443110000 0000 0123789999999 56666544 467
Q ss_pred EEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc-----
Q 003467 277 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA----- 351 (817)
Q Consensus 277 ~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 351 (817)
.+|++.... ..+...+..+.|.++|.. ..+..|++||+.++.. ...+..
T Consensus 198 ~~~~~~~~~-----~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~-----------------~~~l~~~~~~~ 251 (723)
T 1xfd_A 198 PIMELPTYT-----GSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTH-----------------DLEMMPPDDPR 251 (723)
T ss_dssp CEEEECCCS-----SSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCC-----------------CEECCCCCCGG
T ss_pred ceEEeeccC-----CcCCCcceeccCCCCCCC----CCeeEEEEEECCCCce-----------------eEEeeCCccCC
Confidence 777765321 113345788899888863 3455899999987651 122222
Q ss_pred -CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC----CCeEEEEeCCcccccCCccc
Q 003467 352 -HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD----DTKLFAYCANEFTKFSPHEI 426 (817)
Q Consensus 352 -h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~i~~~~~~~~~~~~~~~~ 426 (817)
+...+..++|+ ||++ +|++... +..|++||+.+....
T Consensus 252 ~~~~~~~~~~~S---------pDg~------------------------~l~~~~~~~~~~~~i~~~d~~~g~~~----- 293 (723)
T 1xfd_A 252 MREYYITMVKWA---------TSTK------------------------VAVTWLNRAQNVSILTLCDATTGVCT----- 293 (723)
T ss_dssp GSSEEEEEEEES---------SSSE------------------------EEEEEEETTSCEEEEEEEETTTCCEE-----
T ss_pred CccceeEEEEEe---------CCCe------------------------EEEEEEcCCCCeEEEEEEeCCCCcce-----
Confidence 35667888887 8886 6655432 346777776543200
Q ss_pred CCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCe----EEEEecCC
Q 003467 427 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI----ICSTISNS 502 (817)
Q Consensus 427 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i----~~~~~s~~ 502 (817)
.+ +...+...+ ..++||||
T Consensus 294 -------------------------------------------------------~~--~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 294 -------------------------------------------------------KK--HEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp -------------------------------------------------------EE--EEEECSSCCCCCCCCCEECTT
T ss_pred -------------------------------------------------------EE--EEeccCCEEeccCCCceEcCC
Confidence 00 000001111 36689999
Q ss_pred CcEEEEE---cCC----ceEEEEeecCCCCC--ceEEEeeecCCcccccee-EEEEecCCCEEEEEecC---CcEEEEEc
Q 003467 503 GMLFAYS---DHV----KPSLFELKKGKVGQ--GEWIINKRQLPRKLQFAH-SMIFSYDSSQLIIAGHD---RRIYVVDV 569 (817)
Q Consensus 503 g~~la~~---~~~----~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~-~~~fspd~~~l~~~~~d---g~i~v~d~ 569 (817)
|+.|++. .++ ...+|.++....+. .. ..+......+. .++|+|||++|+..+.+ +.++||++
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-----~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI-----QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC-----CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCccce-----eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 9976653 345 44555554101122 01 22332222344 36999999999877655 78999998
Q ss_pred cCCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCC---cEEEEECCCcceE
Q 003467 570 SSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQH 628 (817)
Q Consensus 570 ~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg---~i~vwd~~~~~~~ 628 (817)
.... ....+.... .|...+..++|||||++|+.....- ...+++..+++..
T Consensus 392 ~~~~~~~~~~l~~~~--------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDL--------VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp CSSTTCCCBCSSTTS--------SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred eCCCCCCcceecccc--------cCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 6432 233333200 0356688999999999998764432 2445566555443
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.9e-21 Score=200.82 Aligned_cols=280 Identities=13% Similarity=0.137 Sum_probs=199.2
Q ss_pred EecCC--eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCc
Q 003467 261 SLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 261 ~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
|.+++ .+++...++.|.+||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||..++..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------- 74 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------- 74 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC---------
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce---------
Confidence 44444 47888899999999999999988888776677 9999999997777665 88999999988761
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC---eEEEEe
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAYC 414 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~~~~ 414 (817)
....+..+.....+++++ |+++ +|+++..++ .|.+||
T Consensus 75 -------~~~~~~~~~~~~~~~~~s---------~dg~------------------------~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 75 -------KVVAIQEGQSSMADVDIT---------PDDQ------------------------FAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp -------EEEEEEECSSCCCCEEEC---------TTSS------------------------EEEECCCSSSSCEEEEEE
T ss_pred -------eEEecccCCCCccceEEC---------CCCC------------------------EEEEecCCCCcccEEEEE
Confidence 144455555555558887 7876 777555553 899999
Q ss_pred CCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCe
Q 003467 415 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 494 (817)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i 494 (817)
+.+.... ..+. .....
T Consensus 115 ~~~~~~~--------------------------------------------------------------~~~~--~~~~~ 130 (331)
T 3u4y_A 115 FLKNKFI--------------------------------------------------------------STIP--IPYDA 130 (331)
T ss_dssp TTTTEEE--------------------------------------------------------------EEEE--CCTTE
T ss_pred CCCCCeE--------------------------------------------------------------EEEE--CCCCc
Confidence 8653310 0011 11345
Q ss_pred EEEEecCCCcEEEEE--cCCc-eEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe-cCCcEEEEEcc
Q 003467 495 ICSTISNSGMLFAYS--DHVK-PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVS 570 (817)
Q Consensus 495 ~~~~~s~~g~~la~~--~~~~-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~-~dg~i~v~d~~ 570 (817)
.+++++|||++++++ .++. +.+|++.. ...+.......+ ........++|+|||++|++++ .++.|++||+.
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~---~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDA---DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECT---TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECC---CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 789999999865553 4477 99999975 222222221212 2233578999999999776655 58899999999
Q ss_pred CCce---eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEECCCcce--EEEEecC---CC---CC
Q 003467 571 SSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ--HWFISRL---EG---AS 638 (817)
Q Consensus 571 ~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~--~~~~~~~---~~---~~ 638 (817)
+++. +..+.. ...+..++|+|||++|++++ .++.|.+||+++++. ...+... +. ..
T Consensus 207 ~~~~~~~~~~~~~------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
T 3u4y_A 207 NPENITLLNAVGT------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG 274 (331)
T ss_dssp STTSCEEEEEEEC------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTT
T ss_pred CCcccceeeeccC------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccc
Confidence 9888 777763 46678999999999887765 477899999999876 2222221 11 12
Q ss_pred eEEEEecCCCCCeEEEEec-CCeEEEEEcCCCcc
Q 003467 639 VTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQL 671 (817)
Q Consensus 639 i~~l~~sp~d~~~l~~~~~-d~~i~vwd~~~~~~ 671 (817)
...++|+| |+++|++++. ++.|.+||+.+...
T Consensus 275 ~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 275 ANQMALNK-TETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceEECC-CCCEEEEecCCCCcEEEEEecCCcc
Confidence 35589999 9998877765 55999999988764
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=4.5e-22 Score=228.40 Aligned_cols=359 Identities=11% Similarity=0.082 Sum_probs=221.0
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEECCCCceE-EEEEeecCC---------CCCCCceeEEEeEEecCCeEEEEcCCCc
Q 003467 206 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGG---------LGSGPELCIWSLLSLRCGTLVSADSTGS 275 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~-~~~~~~~~~---------~~~~~~~~v~~v~~~~~~~l~s~~~dg~ 275 (817)
+..+.|. |+.+++++.|+ | +||+.+|+.+ ..+...... ..+.+...|.+++|+||+.++.+ .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~ 102 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGG 102 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCE
Confidence 4457788 67778888887 8 9999999873 333321000 00011146999999999755555 4599
Q ss_pred EEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec-----ccCCCCCCCCCccccceEEEeeccc
Q 003467 276 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC-----ESIGPNDGLSSSEVIKKWIYVGSVR 350 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (817)
|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++|++.+ ++. .....
T Consensus 103 i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~-----------------~~~~~ 163 (706)
T 2z3z_A 103 LVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA-----------------IAVTI 163 (706)
T ss_dssp EEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC-----------------EESCS
T ss_pred EEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc-----------------EEecc
Confidence 9999999887654 44567789999999999999985 789999999987 541 11112
Q ss_pred cCC--------------CccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC-CeEEEEeC
Q 003467 351 AHT--------------HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD-TKLFAYCA 415 (817)
Q Consensus 351 ~h~--------------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~i~~~~~ 415 (817)
.+. ..+.+++|+ ||++ .|++++.| ..+..+..
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~S---------pDg~------------------------~la~~~~d~~~~~~~~~ 210 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWS---------PKGS------------------------CLAFYRMDQSMVKPTPI 210 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEEC---------TTSS------------------------EEEEEEEECTTSCCEEE
T ss_pred CCCCCeEcccchhhhhcCCCceEEEC---------CCCC------------------------EEEEEEECCCCCceEEe
Confidence 222 225788887 8886 77777633 22222221
Q ss_pred CcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeee--ecCCCC
Q 003467 416 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK--SKASRK 493 (817)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~ 493 (817)
...... .. ......+...+. ......+.+|++..+. ...+. ..+...
T Consensus 211 ~~~~~~----------~~---~~~~~~y~~~g~--~~~~~~l~~~d~~~~~----------------~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 211 VDYHPL----------EA---ESKPLYYPMAGT--PSHHVTVGIYHLATGK----------------TVYLQTGEPKEKF 259 (706)
T ss_dssp EECCSS----------SC---EEEEECCCBTTS--CCCEEEEEEEETTTTE----------------EEECCCCSCTTCE
T ss_pred eccCCC----------CC---ceEEeeCCCCCC--CCCeeEEEEEECCCCc----------------eEeeccCCCCcee
Confidence 110000 00 000011111110 0011256666654332 11111 123456
Q ss_pred eEEEEecCCCcEEEEE-cCC-----ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec--CCCEEEEEecCCcEE
Q 003467 494 IICSTISNSGMLFAYS-DHV-----KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSSQLIIAGHDRRIY 565 (817)
Q Consensus 494 i~~~~~s~~g~~la~~-~~~-----~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--d~~~l~~~~~dg~i~ 565 (817)
+.+++|+|||++|+++ .+. .+.+|++.. +.....+...........+..++|+| ||++|++++.++.++
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAET---GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT---CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC---CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 8899999999988874 333 677887754 21211111111111112346789999 999999999999999
Q ss_pred EEEcc-CCceeeeeccCcccccccCCCCCCceeE-EEEccCCCEEEEEeCC-C----cEEEEECCCcceEEEEecCCCCC
Q 003467 566 VVDVS-SSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLAAVNCF-G----DVYIFNLEIQRQHWFISRLEGAS 638 (817)
Q Consensus 566 v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~dg~~la~~~~d-g----~i~vwd~~~~~~~~~~~~~~~~~ 638 (817)
||++. +++.+..+.. +...+.. ++|||||++|++++.+ + .|+.||+++++.. .+. +...
T Consensus 337 l~~~~~~~~~~~~l~~-----------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--~~~~ 402 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTK-----------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT--PESG 402 (706)
T ss_dssp EEEEETTSCEEEECCC-----------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC--CSSS
T ss_pred EEEEECCCCEEEecCC-----------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc--CCCc
Confidence 99886 6677777765 6667776 8999999988766554 3 6777788777632 332 4457
Q ss_pred eEEEEecCCCCCeEEEEecC----CeEEEEEcCCCc
Q 003467 639 VTAAGFPPQNNNVLIITTSS----NQVYVFDVEAKQ 670 (817)
Q Consensus 639 i~~l~~sp~d~~~l~~~~~d----~~i~vwd~~~~~ 670 (817)
+.+++|+| |+++|+.++.+ +.|++||+++++
T Consensus 403 ~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 MHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 89999999 99988877554 469999998886
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.8e-21 Score=200.99 Aligned_cols=238 Identities=8% Similarity=0.048 Sum_probs=173.8
Q ss_pred EEECCCCCe-EEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CCeEEEEECC
Q 003467 19 LATSADDSQ-VAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DGSVSEWDLY 96 (817)
Q Consensus 19 la~spdg~~-la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~i~vwd~~ 96 (817)
..|.+++++ +++++.++.|.+||..+++ ....+..+ ...+ +++|+|++++ |++++. ++.|.+||+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~-~~~~s~dg~~------l~~~~~~~~~i~~~d~~ 70 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE----ILNQITLG-YDFV-DTAITSDCSN------VVVTSDFCQTLVQIETQ 70 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC----EEEEEECC-CCEE-EEEECSSSCE------EEEEESTTCEEEEEECS
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc----eeeeEEcc-CCcc-eEEEcCCCCE------EEEEeCCCCeEEEEECC
Confidence 356666665 6677888999999999887 45555544 4566 9999999986 666655 8899999999
Q ss_pred CCeE-EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEE
Q 003467 97 DLKQ-KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVAL 175 (817)
Q Consensus 97 ~~~~-~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (817)
+++. ...+..+..+..+++|+|++ +++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~s~dg--------------------------------------------------~~l~~ 100 (331)
T 3u4y_A 71 LEPPKVVAIQEGQSSMADVDITPDD--------------------------------------------------QFAVT 100 (331)
T ss_dssp SSSCEEEEEEECSSCCCCEEECTTS--------------------------------------------------SEEEE
T ss_pred CCceeEEecccCCCCccceEECCCC--------------------------------------------------CEEEE
Confidence 9998 77777777776669999999 36665
Q ss_pred EeCCC---cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCc-EEEEECCCCceEEEEEeecCCCCC
Q 003467 176 ACDDG---CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGY-IRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 176 ~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~-i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
+..++ .|++||+.+++.+ ..+.. .....+++|+|||++|+++ ..++. |.+|++.....+........
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~---~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~---- 172 (331)
T 3u4y_A 101 VTGLNHPFNMQSYSFLKNKFI---STIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI---- 172 (331)
T ss_dssp CCCSSSSCEEEEEETTTTEEE---EEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE----
T ss_pred ecCCCCcccEEEEECCCCCeE---EEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc----
Confidence 55543 8999999866554 33332 3356899999999866655 45578 99999876544322210000
Q ss_pred CCceeEEEeEEecCCe--EEEEcCCCcEEEEeCCCCeE---EEEeecCccCeeEEEEecCCCEEEEEc-cCCcEEEEEee
Q 003467 251 GPELCIWSLLSLRCGT--LVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYKAS 324 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~--l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~ 324 (817)
........++|+|+|. ++++..++.|.+||+.+++. +..+.. ...+..++|+|||++|+++. .++.|.+||..
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 2334478999999993 45566789999999999888 777765 46778999999999887765 47789999988
Q ss_pred ccc
Q 003467 325 CES 327 (817)
Q Consensus 325 ~~~ 327 (817)
+++
T Consensus 252 ~~~ 254 (331)
T 3u4y_A 252 SGT 254 (331)
T ss_dssp TTE
T ss_pred CCc
Confidence 765
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.8e-21 Score=203.13 Aligned_cols=262 Identities=14% Similarity=0.128 Sum_probs=200.9
Q ss_pred CCceEEEEECCCCCeEEEEec-------CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 13 PSPVVALATSADDSQVAAARE-------DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~-------dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
...+..++|+|+|++|+++.. ++.|.+||..+++ ....+... ..+.+++|+|+|++ .+++..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~--~~~~~~~~s~dg~~-----l~v~~~ 108 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE----VTQAIHND--LKPFGATINNTTQT-----LWFGNT 108 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC----EEEEEEES--SCCCSEEEETTTTE-----EEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe----EEEEEecC--CCcceEEECCCCCE-----EEEEec
Confidence 356789999999999988874 4689999999887 34445432 35778999999985 144455
Q ss_pred CCCeEEEEECCCCeEEEEEeecCce---------EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 86 IDGSVSEWDLYDLKQKIVLQSIDFS---------IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 86 ~d~~i~vwd~~~~~~~~~~~~~~~~---------i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
.++.|.+||+.+++.+..+..+... +..++|+|++.
T Consensus 109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~----------------------------------- 153 (353)
T 3vgz_A 109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN----------------------------------- 153 (353)
T ss_dssp TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-----------------------------------
T ss_pred CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC-----------------------------------
Confidence 5799999999999998888765432 78899999984
Q ss_pred CCCccccccccccCCEEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC
Q 003467 157 SDSDELHEQSVVEDRRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 234 (817)
++++++ .++.|.+||..+++.. ..+..+...+.+++|+|+|++|++++.++.|.+||..+
T Consensus 154 ---------------~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~ 215 (353)
T 3vgz_A 154 ---------------TVYISGIGKESVIWVVDGGNIKLK---TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215 (353)
T ss_dssp ---------------EEEEEEESSSCEEEEEETTTTEEE---EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred ---------------EEEEEecCCCceEEEEcCCCCceE---EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 455544 5889999999866554 44444555678899999999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEE-EEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
++.+..+..... ++...+..++|+|++ .++ +...++.|.+||..+++.+..+.... ...++|+|++++++++
T Consensus 216 ~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 216 NKILSRKKLLDD----GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVT 289 (353)
T ss_dssp TEEEEEEECCCS----SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEE
T ss_pred CeEEEEEEcCCC----CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEE
Confidence 998888774211 245578889999999 444 44456999999999999988887543 3679999999977765
Q ss_pred c-cCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 313 G-SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 313 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
. .++.|.+||..+++ .+..+... ..+.+++++
T Consensus 290 ~~~~~~v~~~d~~~~~-----------------~~~~~~~~-~~~~~~~~s 322 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSYK-----------------VVKTFDTP-THPNSLALS 322 (353)
T ss_dssp ETTTTEEEEEETTTTE-----------------EEEEEECC-SEEEEEEEC
T ss_pred ECCCCeEEEEECCCCe-----------------EEEEEecC-CCCCeEEEc
Confidence 5 68999999998776 34444333 356788887
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=4.9e-21 Score=198.92 Aligned_cols=304 Identities=12% Similarity=0.088 Sum_probs=196.8
Q ss_pred CEEE-EeeCCCcEEEEECC-CCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC-CcEEEEeCC--CCe--EE
Q 003467 216 NMLY-SGSSDGYIRSWDAK-LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-GSVQFWDSR--HGT--LL 287 (817)
Q Consensus 216 ~~l~-s~~~dg~i~vwd~~-~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d-g~i~iwd~~--~~~--~~ 287 (817)
++++ +++.|+.|++||+. ++........ .+...+..++|+|++ .+++++.+ +.|.+|++. +++ .+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 77 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 77 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-------ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence 3444 44779999999995 3432221111 255678889999999 47776665 999999997 554 34
Q ss_pred EEeecCccCeeEEEEecCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccC
Q 003467 288 QAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS 366 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 366 (817)
..+..+. .+..++|+|++++|++++. ++.|.+|++..+. ..........+ ..+.+++++
T Consensus 78 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~~-~~~~~~~~s---- 137 (343)
T 1ri6_A 78 AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL--------------PVGVVDVVEGL-DGCHSANIS---- 137 (343)
T ss_dssp EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE--------------EEEEEEEECCC-TTBCCCEEC----
T ss_pred cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc--------------cccccccccCC-CCceEEEEC----
Confidence 5555444 8899999999998877665 8899999995221 01133333333 347888887
Q ss_pred CCCCCCccccccccCCCCCccccccccccCCCcEEEEec-CCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC
Q 003467 367 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH 445 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 445 (817)
|+++ .+++++ .++.|.+|++.......
T Consensus 138 -----~dg~------------------------~l~~~~~~~~~v~~~d~~~~~~~~----------------------- 165 (343)
T 1ri6_A 138 -----PDNR------------------------TLWVPALKQDRICLFTVSDDGHLV----------------------- 165 (343)
T ss_dssp -----TTSS------------------------EEEEEEGGGTEEEEEEECTTSCEE-----------------------
T ss_pred -----CCCC------------------------EEEEecCCCCEEEEEEecCCCcee-----------------------
Confidence 7775 566555 88999999986411000
Q ss_pred CeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceee--eeeecCCCCeEEEEecCCCcEEEE-E-cCCceEEEEeec
Q 003467 446 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV--QVKSKASRKIICSTISNSGMLFAY-S-DHVKPSLFELKK 521 (817)
Q Consensus 446 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~s~~g~~la~-~-~~~~i~l~~~~~ 521 (817)
.+. .........+.+++++|+|+++++ + .++.+.+|++..
T Consensus 166 ------------------------------------~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 166 ------------------------------------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp ------------------------------------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred ------------------------------------eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 000 111112245778999999997665 3 568999999864
Q ss_pred CCCCCceEEEeeecCCcc---ccceeEEEEecCCCEEEEEe-cCCcEEEEEcc--CC--ceeeeeccCcccccccCCCCC
Q 003467 522 GKVGQGEWIINKRQLPRK---LQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVS--SS--ELLHTFTPCREEHDREIQPSE 593 (817)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~---~~~i~~~~fspd~~~l~~~~-~dg~i~v~d~~--~~--~~~~~~~~~~~~~~~~~~~~~ 593 (817)
.......... ...++.. ...+..++|+|||++|+++. .++.|.+||+. ++ +.+..+.. +
T Consensus 210 ~~g~~~~~~~-~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----------~- 276 (343)
T 1ri6_A 210 PHGNIECVQT-LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-----------E- 276 (343)
T ss_dssp TTSCCEEEEE-EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----------S-
T ss_pred CCCcEEEEee-ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-----------C-
Confidence 2222211111 1112221 23566899999999887555 68999999997 33 34444543 2
Q ss_pred CceeEEEEccCCCEEEEEe-CCCcEEEEEC--CCcceE--EEEecCCCCCeEEEEecCCCCC
Q 003467 594 PPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQH--WFISRLEGASVTAAGFPPQNNN 650 (817)
Q Consensus 594 ~~i~~l~~s~dg~~la~~~-~dg~i~vwd~--~~~~~~--~~~~~~~~~~i~~l~~sp~d~~ 650 (817)
..+..++|+|||++|++++ .++.|.+|++ ++++.. ..++. +..+.+++|.| +.+
T Consensus 277 ~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~-~~~ 335 (343)
T 1ri6_A 277 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNA-HEG 335 (343)
T ss_dssp SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEE-EC-
T ss_pred CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEc-ccC
Confidence 3388999999999999888 6799999955 455433 22332 24677888887 443
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=7.5e-21 Score=197.50 Aligned_cols=253 Identities=11% Similarity=0.132 Sum_probs=181.2
Q ss_pred cCCCceEEEEECCCCCeEEEEecC-CcEEEEecC--CCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-
Q 003467 11 WKPSPVVALATSADDSQVAAARED-GSLEIWLVS--PGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI- 86 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~d-g~i~iwd~~--~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~- 86 (817)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++ ......+..+ ..+.+++|+|++++ |++++.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~s~dg~~------l~~~~~~ 104 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--LTFAAESALP--GSLTHISTDHQGQF------VFVGSYN 104 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--EEEEEEEECS--SCCSEEEECTTSSE------EEEEETT
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc--eeeccccccC--CCCcEEEEcCCCCE------EEEEecC
Confidence 467789999999999999998876 899999998 444 2234445543 37889999999987 766654
Q ss_pred CCeEEEEEC---CCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 87 DGSVSEWDL---YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 87 d~~i~vwd~---~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
++.|.+||+ .+++....+.. ...+.+++|+|++
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg------------------------------------------- 140 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDN------------------------------------------- 140 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTS-------------------------------------------
T ss_pred CCeEEEEECCCCccccccccccC-CCCceEEEECCCC-------------------------------------------
Confidence 889999999 44445555543 3458889999998
Q ss_pred ccccccCCEEEEEe-CCCcEEEEEecCCCceeEee--ccCC-ccceEEEEEEccCCCEEEEee-CCCcEEEEECC--CCc
Q 003467 164 EQSVVEDRRVALAC-DDGCVRIYRITDSDELIYHR--SLPR-VSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK--LGY 236 (817)
Q Consensus 164 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~-h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~--~g~ 236 (817)
+.+++++ .++.|++||+.+...+.... .+.. ....+.+++|+|+|++|++++ .++.|.+|++. +++
T Consensus 141 -------~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 141 -------RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp -------SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred -------CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 3566666 89999999998634443222 2222 334788999999999776555 78999999995 354
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC-eEE-EEcCCCcEEEEeCC----CCeEEEEeecCccCeeEEEEecCCCEEE
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-s~~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
...................+..++|+|++ .|+ ++..++.|.+||+. ..+.+..+..+.. +..++|+|++++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLI 292 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEE
Confidence 32221111111111223467789999999 444 66689999999998 3345555655544 89999999999999
Q ss_pred EEc-cCCcEEEEEeec
Q 003467 311 STG-SDGQVILYKASC 325 (817)
Q Consensus 311 ~~~-~dg~i~iw~~~~ 325 (817)
+++ .++.|.+|+++.
T Consensus 293 ~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 293 AAGQKSHHISVYEIVG 308 (343)
T ss_dssp EECTTTCEEEEEEEET
T ss_pred EecCCCCeEEEEEEcC
Confidence 887 589999997764
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=4.4e-21 Score=198.72 Aligned_cols=176 Identities=15% Similarity=0.104 Sum_probs=131.0
Q ss_pred eEEEeeCCCeEEEEECCCCeEEEEEeecCc--eEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 80 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDF--SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 80 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
.|++++.+++|.+||+.+++.+..+..... .+..++|+|++..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----------------------------------- 47 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI----------------------------------- 47 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-----------------------------------
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-----------------------------------
Confidence 489999999999999999999888773332 5788999999842
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCC---ccceEEEEEEccCCCEEEEee------------
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVLSVTWSADGNMLYSGS------------ 222 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~v~~s~dg~~l~s~~------------ 222 (817)
.++++..++.|.+||+.+++.+.... +.. |...+.+++|+|+|++|++++
T Consensus 48 --------------l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 48 --------------AYATVNKSESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp --------------EEEEETTTTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred --------------EEEEeCCCCeEEEEECCCCCeEeeEE-cCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 44566678999999998766542211 111 233577899999999999886
Q ss_pred CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEE
Q 003467 223 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 301 (817)
Q Consensus 223 ~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 301 (817)
.++.|.+||+.+++.+..+.. ...+..++|+|++ .++++ ++.|.+||+.+++.+..+..+... ..++
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~ 180 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETY 180 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTB
T ss_pred cCceEEEEECCCCcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCce
Confidence 579999999999988877762 2346778899999 46666 688999999999988777654311 1237
Q ss_pred EecCCCEEEEEccCCc
Q 003467 302 AAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 302 ~s~~~~~l~~~~~dg~ 317 (817)
|+|+++.++..+..+.
T Consensus 181 ~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 181 AQPDVLAVWNQHESSG 196 (337)
T ss_dssp CCCBCCCCCCCCTTTT
T ss_pred eCCCccEEeeeccCCC
Confidence 7888887766554433
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=3.2e-20 Score=193.58 Aligned_cols=274 Identities=12% Similarity=0.132 Sum_probs=207.6
Q ss_pred cceEEEEEEccCCCEEEEeeC-------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe--EEEEcCC
Q 003467 203 SGRVLSVTWSADGNMLYSGSS-------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT--LVSADST 273 (817)
Q Consensus 203 ~~~v~~v~~s~dg~~l~s~~~-------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--l~s~~~d 273 (817)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+.. ...+..++++|+|. +++...+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~~~~ 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---------DLKPFGATINNTTQTLWFGNTVN 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---------SSCCCSEEEETTTTEEEEEETTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---------CCCcceEEECCCCCEEEEEecCC
Confidence 346789999999999988874 56899999999998888873 22366789999983 4566668
Q ss_pred CcEEEEeCCCCeEEEEeecCccC---------eeEEEEecCCCEEEEEc--cCCcEEEEEeecccCCCCCCCCCccccce
Q 003467 274 GSVQFWDSRHGTLLQAHSFHKGD---------VNALAAAPSHNRVFSTG--SDGQVILYKASCESIGPNDGLSSSEVIKK 342 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 342 (817)
+.|.+||..+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..+++
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--------------- 175 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--------------- 175 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE---------------
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc---------------
Confidence 99999999999998888765432 68899999999888776 47889999998776
Q ss_pred EEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccC
Q 003467 343 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS 422 (817)
Q Consensus 343 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~ 422 (817)
.+..+..+...+.+++++ |+++ .|++++.++.+.+||..+.+..
T Consensus 176 --~~~~~~~~~~~~~~~~~s---------~dg~------------------------~l~~~~~~~~i~~~d~~~~~~~- 219 (353)
T 3vgz_A 176 --LKTAIQNTGKMSTGLALD---------SEGK------------------------RLYTTNADGELITIDTADNKIL- 219 (353)
T ss_dssp --EEEEECCCCTTCCCCEEE---------TTTT------------------------EEEEECTTSEEEEEETTTTEEE-
T ss_pred --eEEEecCCCCccceEEEC---------CCCC------------------------EEEEEcCCCeEEEEECCCCeEE-
Confidence 445555455567788887 7775 7777777888888887642200
Q ss_pred CcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCC
Q 003467 423 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 502 (817)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~ 502 (817)
+. +.
T Consensus 220 -------------------------------------~~------------------------~~--------------- 223 (353)
T 3vgz_A 220 -------------------------------------SR------------------------KK--------------- 223 (353)
T ss_dssp -------------------------------------EE------------------------EE---------------
T ss_pred -------------------------------------EE------------------------EE---------------
Confidence 00 00
Q ss_pred CcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec-CCcEEEEEccCCceeeeeccC
Q 003467 503 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 503 g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~ 581 (817)
....++...+..++|+||+++|++++. ++.|.+||+.+++.+..+..
T Consensus 224 -------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~- 271 (353)
T 3vgz_A 224 -------------------------------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA- 271 (353)
T ss_dssp -------------------------------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-
T ss_pred -------------------------------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-
Confidence 000011224678899999998877765 48999999999998888774
Q ss_pred cccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCC
Q 003467 582 REEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN 659 (817)
Q Consensus 582 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~ 659 (817)
.. ...++|+|||++|++++ .++.|.+||+.+++....++.. ..+.+++|+| ++++|+++..++
T Consensus 272 ----------~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 ----------PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp ----------SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECT-TSCEEEEEEECC
T ss_pred ----------CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcC-CCCEEEEEEccc
Confidence 22 25689999999776666 6899999999999887777543 4789999999 999888877664
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=4.9e-22 Score=201.65 Aligned_cols=236 Identities=17% Similarity=0.123 Sum_probs=182.1
Q ss_pred eeeccCCCceEEEEECCCCCeEEEEecCCcEEEEecCC-CCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 7 SSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSP-GTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 7 r~~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+.+..|+..|.+++|||||++||+++ ++.|.+||+.+ ++. .....+++...|.+++|+|++++ |++++
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~------l~~~~ 103 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP----EKVDTGFATICNNDHGISPDGAL------YAISD 103 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC----EECCCTTCCCBCSCCEECTTSSE------EEEEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc----eEeccccccccccceEECCCCCE------EEEEE
Confidence 44556889999999999999999987 78999999998 763 44555655678999999999987 88888
Q ss_pred --CCCeEEE--EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 86 --IDGSVSE--WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 86 --~d~~i~v--wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
.++.+.+ |++.+++ ...+..+ ..+..++|+|++.
T Consensus 104 ~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~---------------------------------------- 141 (297)
T 2ojh_A 104 KVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGK---------------------------------------- 141 (297)
T ss_dssp CTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSS----------------------------------------
T ss_pred eCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCC----------------------------------------
Confidence 3344444 5555555 4444433 3488899999984
Q ss_pred ccccccccCCEEE-EEeCCCcEEEEEecC-CCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECC-CCce
Q 003467 162 LHEQSVVEDRRVA-LACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK-LGYE 237 (817)
Q Consensus 162 ~~~~~~~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~-~g~~ 237 (817)
.|+ ++..++.++||++.. .... ..+..|...+.+++|+|+|++|++++ .++.+++|++. .+..
T Consensus 142 ----------~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 142 ----------SFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp ----------EEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ----------EEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 454 778899999999763 2333 56667888999999999999888776 48999999986 4555
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC-----------CcEEEEeCCCCeE--EEEeecCccCeeEEEEe
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-----------GSVQFWDSRHGTL--LQAHSFHKGDVNALAAA 303 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d-----------g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s 303 (817)
...+. .+...+..++|+|++ .|++++.+ +.|.+||+.+++. +..+..|...+.+++|+
T Consensus 209 ~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 209 VERIT--------DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp EEECC--------CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred cEEEe--------cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 55554 567889999999999 56666654 5699999998765 44455788899999999
Q ss_pred cCCCEEEEEccCC
Q 003467 304 PSHNRVFSTGSDG 316 (817)
Q Consensus 304 ~~~~~l~~~~~dg 316 (817)
|++++|++++.+.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 9999999887653
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=2.1e-21 Score=197.06 Aligned_cols=247 Identities=17% Similarity=0.158 Sum_probs=185.6
Q ss_pred EEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC-CeEEEEEeec-
Q 003467 30 AAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD-LKQKIVLQSI- 107 (817)
Q Consensus 30 ~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~- 107 (817)
.++.++.|.+||+.+++ ...+..| ...|.+++|+|++++ |++++ ++.|.+||+.+ ++.......+
T Consensus 17 ~~~~~~~i~~~d~~~~~-----~~~~~~~-~~~v~~~~~spdg~~------l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK-----MRVVWQT-PELFEAPNWSPDGKY------LLLNS-EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp -CCCCEEEEEEETTTTE-----EEEEEEE-SSCCEEEEECTTSSE------EEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred CCCcceeEEEEeCCCCc-----eeeeccC-CcceEeeEECCCCCE------EEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence 34678999999998876 2334444 678999999999987 88876 78999999999 8877766655
Q ss_pred CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe--CCCcEEEE
Q 003467 108 DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC--DDGCVRIY 185 (817)
Q Consensus 108 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iw 185 (817)
...+.+++|+|++ +.|++++ .++...||
T Consensus 84 ~~~~~~~~~spdg--------------------------------------------------~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 84 TICNNDHGISPDG--------------------------------------------------ALYAISDKVEFGKSAIY 113 (297)
T ss_dssp CCBCSCCEECTTS--------------------------------------------------SEEEEEECTTTSSCEEE
T ss_pred cccccceEECCCC--------------------------------------------------CEEEEEEeCCCCcceEE
Confidence 3778899999999 4777777 44566666
Q ss_pred EecC-CCceeEeeccCCccceEEEEEEccCCCEEE-EeeCCCcEEEEECCC-CceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 186 RITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 186 d~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
.+.. .... ..+..+. .+.+++|+||+++|+ +++.++.+++|++.. +.....+. .+...+.+++|+
T Consensus 114 ~~~~~~~~~---~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~s 181 (297)
T 2ojh_A 114 LLPSTGGTP---RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT--------HGEGRNDGPDYS 181 (297)
T ss_dssp EEETTCCCC---EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC--------CSSSCEEEEEEC
T ss_pred EEECCCCce---EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc--------cCCCccccceEC
Confidence 6642 2222 3344443 488999999999887 777899999998642 22333333 466788999999
Q ss_pred cCC-eEEEE-cCCCcEEEEeCC-CCeEEEEeecCccCeeEEEEecCCCEEEEEccC-----------CcEEEEEeecccC
Q 003467 263 RCG-TLVSA-DSTGSVQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-----------GQVILYKASCESI 328 (817)
Q Consensus 263 ~~~-~l~s~-~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d-----------g~i~iw~~~~~~~ 328 (817)
|++ .++.+ ..++.+++|++. .+..+..+..|...+.+++|+|++++|++++.+ +.|.+|++.+++.
T Consensus 182 ~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 182 PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 999 45544 458999999886 466677888888899999999999999988765 5699999877651
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccc
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 375 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~ 375 (817)
..+..+..|...+..++|+ |+++
T Consensus 262 ---------------~~~~~~~~~~~~~~~~~~s---------pdg~ 284 (297)
T 2ojh_A 262 ---------------ETLFDLFGGQGTMNSPNWS---------PDGD 284 (297)
T ss_dssp ---------------EEEEEEEESTTTSCSCCBC---------TTSS
T ss_pred ---------------eeeeccCCCCcccccceEC---------CCCC
Confidence 1344455778889999987 8876
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.2e-21 Score=219.08 Aligned_cols=233 Identities=10% Similarity=0.126 Sum_probs=177.0
Q ss_pred CCCceEEEEECCCCCeEEEEec-CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---C
Q 003467 12 KPSPVVALATSADDSQVAAARE-DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---D 87 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d 87 (817)
+..+|.+++|||||++||+++. ||++.||++.+++ ...+..++...|.+++|||| +. +++++. +
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-----~~~lt~~~~~~~~~~~~spd-~~------l~~~~~~~g~ 87 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-----TVKLNREPINSVLDPHYGVG-RV------ILVRDVSKGA 87 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-----EEECCSSCCSEECEECTTCS-EE------EEEEECSTTS
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-----cEeeecccccccccccCCCC-eE------EEEeccCCCC
Confidence 3568999999999999999876 9999999997664 45555664578999999999 65 777664 4
Q ss_pred CeEEEEECCC---CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccc
Q 003467 88 GSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHE 164 (817)
Q Consensus 88 ~~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (817)
....+|.+.. +... .+... ..+...+|+|+++.+
T Consensus 88 ~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~----------------------------------------- 124 (582)
T 3o4h_A 88 EQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAV----------------------------------------- 124 (582)
T ss_dssp CCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCE-----------------------------------------
T ss_pred cceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeE-----------------------------------------
Confidence 5556655432 3323 33322 234467889988542
Q ss_pred cccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC----CcEEEEECCCCceEEE
Q 003467 165 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD----GYIRSWDAKLGYEIYR 240 (817)
Q Consensus 165 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d----g~i~vwd~~~g~~~~~ 240 (817)
.++++.. +.+.+||+.+++.. .+..+.. .+++|+|||++|++++.+ +.|++||+.+++.. .
T Consensus 125 -------~~~s~~~-~~~~l~d~~~g~~~----~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~ 189 (582)
T 3o4h_A 125 -------VFTGATE-DRVALYALDGGGLR----ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-V 189 (582)
T ss_dssp -------EEEEECS-SCEEEEEEETTEEE----EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-E
T ss_pred -------EEEecCC-CCceEEEccCCcEE----EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-E
Confidence 4444444 45559999866432 2223333 789999999999988877 78999999888765 4
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC--cEEEEeCCCCeEEEEeecCccCeeEEE--------EecCCCEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG--SVQFWDSRHGTLLQAHSFHKGDVNALA--------AAPSHNRV 309 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~--------~s~~~~~l 309 (817)
+. .+...+..++|+||| .|++++.++ .|++||+.+++.. .+..|...+..++ |+|||..+
T Consensus 190 l~--------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 190 FD--------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp EC--------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred ee--------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 44 577888999999999 577777888 8999999998887 7778887787777 99999888
Q ss_pred EEEccCCcEEEEEe
Q 003467 310 FSTGSDGQVILYKA 323 (817)
Q Consensus 310 ~~~~~dg~i~iw~~ 323 (817)
++++.|+.+++|++
T Consensus 261 ~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 261 VVARREGRSAVFID 274 (582)
T ss_dssp EEEEETTEEEEEET
T ss_pred EEEEcCCcEEEEEE
Confidence 89999999999999
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.1e-20 Score=200.83 Aligned_cols=250 Identities=18% Similarity=0.151 Sum_probs=176.6
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCC-------CcEE-----EEEEcCCCCCcEEEEEEeecCCCCCCCc
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTS-------GWHC-----QLTVHGDPKSRISSLVWCHAGKMGLPGG 79 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~-------~~~~-----~~~~~g~~~~~V~~l~~s~~~~~~~~~~ 79 (817)
+...++.+|+++++.+||+|+.++ |.||+...... .... ...+ ++...|.+++|+|++++
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~----- 106 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV--PMKFPIHHLALSCDNLT----- 106 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE--CCSSCEEEEEECTTSCE-----
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc--cCCCcccEEEEcCCCCE-----
Confidence 334689999999999999999888 99987542100 0000 0112 12568999999999987
Q ss_pred eEE----EeeCCCeEEEEECCCC--------eE---EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCC
Q 003467 80 RLF----SSSIDGSVSEWDLYDL--------KQ---KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSND 144 (817)
Q Consensus 80 ~l~----s~~~d~~i~vwd~~~~--------~~---~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (817)
|+ +++.|++|++||+.++ +. +..+.+|...|.+++|+|+..
T Consensus 107 -lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----------------------- 162 (434)
T 2oit_A 107 -LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP----------------------- 162 (434)
T ss_dssp -EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-----------------------
T ss_pred -EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-----------------------
Confidence 88 7889999999999765 22 455667999999999999842
Q ss_pred CCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC
Q 003467 145 SDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD 224 (817)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d 224 (817)
.+|++++.||.|++||+.++... ....+|...|.+++|+|+|++|++|+.|
T Consensus 163 --------------------------~~las~s~Dg~v~iwD~~~~~~~---~~~~~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 163 --------------------------SMVAVCLADGSIAVLQVTETVKV---CATLPSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp --------------------------TEEEEEETTSCEEEEEESSSEEE---EEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred --------------------------CEEEEEECCCeEEEEEcCCCcce---eeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence 48999999999999999866333 4455788999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEE--EEcCCCc------EEEEeCCCCe-----EEEEee
Q 003467 225 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV--SADSTGS------VQFWDSRHGT-----LLQAHS 291 (817)
Q Consensus 225 g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~--s~~~dg~------i~iwd~~~~~-----~~~~~~ 291 (817)
|.|++||++ ++....+..... ....|...|.++.|++++.++ ....+|. +++|++.... ....+.
T Consensus 214 g~v~iwd~~-~~~~~~~~~~~~-~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~ 291 (434)
T 2oit_A 214 GTVVQYLPT-LQEKKVIPCPPF-YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFM 291 (434)
T ss_dssp SCEEEECTT-CCEEEEECCCTT-CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECC
T ss_pred CcEEEEccC-CcccccccCCcc-cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecc
Confidence 999999998 666655543211 111345689999999999544 2333432 8999998542 112211
Q ss_pred -------cCccCeeEEEEecCCCEEEEEcc-CCcEEEEEee
Q 003467 292 -------FHKGDVNALAAAPSHNRVFSTGS-DGQVILYKAS 324 (817)
Q Consensus 292 -------~h~~~v~~l~~s~~~~~l~~~~~-dg~i~iw~~~ 324 (817)
+....-..+..-++.+++++++. .+.|.++...
T Consensus 292 ~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 292 EPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 12223333444477777766544 5557777643
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=3.8e-19 Score=184.75 Aligned_cols=279 Identities=12% Similarity=0.102 Sum_probs=179.5
Q ss_pred CCcEEEEEC--CCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC---CCcEEEEeCCCCe--EEEEeecCccC
Q 003467 224 DGYIRSWDA--KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS---TGSVQFWDSRHGT--LLQAHSFHKGD 296 (817)
Q Consensus 224 dg~i~vwd~--~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~h~~~ 296 (817)
++.|.+|++ .+|+....... .+...+..++|+|||.+++++. ++.|.+||+.+++ .+..+..+...
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~-------~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL-------AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE-------EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred CCCEEEEEEcCCCCeEEEeeee-------eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC
Confidence 455666665 45554332211 2334566799999997655544 6899999998766 44555567788
Q ss_pred eeEEEEecCCCEEEEEc-cCCcEEEEEeecccCCCCCCCCCccccceEEEeecccc---------CCCccceeEeecccC
Q 003467 297 VNALAAAPSHNRVFSTG-SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA---------HTHDVRALTVAVPIS 366 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~~~~~~ 366 (817)
+..++|+|||++|++++ .++.|.+|++..... ...+..... +...+.+++++
T Consensus 88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~s---- 149 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLT---- 149 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTTEEEEEEECTTSC--------------EEEEEEEECCCCCSSTTCSSCCEEEEEEC----
T ss_pred CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC--------------eeecceeecCCCCCCccccCCCceEEEEC----
Confidence 99999999999998887 689999999963220 001111111 12235567776
Q ss_pred CCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCC
Q 003467 367 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT 446 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 446 (817)
|+++ ++++...++.|.+|++.....+
T Consensus 150 -----pdg~------------------------l~v~~~~~~~v~~~~~~~~g~~------------------------- 175 (347)
T 3hfq_A 150 -----PDNR------------------------LAVIDLGSDKVYVYNVSDAGQL------------------------- 175 (347)
T ss_dssp -----TTSC------------------------EEEEETTTTEEEEEEECTTSCE-------------------------
T ss_pred -----CCCc------------------------EEEEeCCCCEEEEEEECCCCcE-------------------------
Confidence 6664 7777777888888887621100
Q ss_pred eEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE--cCCceEEEEeecCCC
Q 003467 447 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKV 524 (817)
Q Consensus 447 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~ 524 (817)
..+..+..........++|+|||++++++ .++.+.+|++....
T Consensus 176 ----------------------------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~- 220 (347)
T 3hfq_A 176 ----------------------------------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT- 220 (347)
T ss_dssp ----------------------------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-
T ss_pred ----------------------------------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-
Confidence 00111111122346779999999976664 45889999987511
Q ss_pred CCceEEEee-ecCCcc---ccceeEEEEecCCCEEEEE-ecCCcEEEEEccC-C--ceeeeeccCcccccccCCCCCCce
Q 003467 525 GQGEWIINK-RQLPRK---LQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSS-S--ELLHTFTPCREEHDREIQPSEPPI 596 (817)
Q Consensus 525 ~~~~~~~~~-~~~~~~---~~~i~~~~fspd~~~l~~~-~~dg~i~v~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~i 596 (817)
+ .+..+.. ...+.. ...+..++|+|||++|+++ ..++.|.+|++.. + +.+..+.. +...+
T Consensus 221 g-~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------~~~~~ 288 (347)
T 3hfq_A 221 G-AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-----------EGDFP 288 (347)
T ss_dssp T-EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----------SSSCC
T ss_pred C-ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----------CCCCc
Confidence 2 2111111 112211 1358889999999988554 4589999999962 2 44444544 45678
Q ss_pred eEEEEccCCCEEEEEeCC-CcEEEE--ECCCcceE
Q 003467 597 TKMFTSSDGQWLAAVNCF-GDVYIF--NLEIQRQH 628 (817)
Q Consensus 597 ~~l~~s~dg~~la~~~~d-g~i~vw--d~~~~~~~ 628 (817)
..++|||||++|++++.+ +.|.+| |.++++..
T Consensus 289 ~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 289 RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 899999999999888765 889999 55566654
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=7.8e-20 Score=190.01 Aligned_cols=255 Identities=17% Similarity=0.140 Sum_probs=176.9
Q ss_pred cCCCceEEEEECCCCCeEEEEec---CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-C
Q 003467 11 WKPSPVVALATSADDSQVAAARE---DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-I 86 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~ 86 (817)
.+......++|||||+ |++++. ++.|.+|++.+++. .....+..+ ...+..++|+|||++ |++++ .
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~~-~~~p~~~a~spdg~~------l~~~~~~ 106 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--HKLNTVVAP-GTPPAYVAVDEARQL------VYSANYH 106 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--EEEEEEEEE-SCCCSEEEEETTTTE------EEEEETT
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--EEeeeeecC-CCCCEEEEECCCCCE------EEEEeCC
Confidence 3446678899999999 555443 68999999977652 123333333 467889999999987 88887 6
Q ss_pred CCeEEEEECC-CCe--EEEEEeec---------CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 87 DGSVSEWDLY-DLK--QKIVLQSI---------DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 87 d~~i~vwd~~-~~~--~~~~~~~~---------~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
+++|.+|++. ++. .+..+... ...+.+++|+|++
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg---------------------------------- 152 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN---------------------------------- 152 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS----------------------------------
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC----------------------------------
Confidence 7999999996 333 33333321 2248889999998
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCEEEEe-eCCCcEEEEEC
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNMLYSG-SSDGYIRSWDA 232 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~ 232 (817)
+++++...++.|++|++.....+.....+..+ ...+..++|+|||++|+++ ..++.|.+|++
T Consensus 153 ----------------~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 153 ----------------RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp ----------------CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ----------------cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 45666677889999999843444332322222 2367889999999976664 56789999998
Q ss_pred CC--CceEEEEEeecCCCCCCCceeEEEeEEecCCe-E-EEEcCCCcEEEEeCCC---CeEEEEeecCccCeeEEEEecC
Q 003467 233 KL--GYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-L-VSADSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPS 305 (817)
Q Consensus 233 ~~--g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l-~s~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~s~~ 305 (817)
.. ++...................+..++|+|||. | ++...++.|.+|++.. .+.+..+..+...+..++|+||
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd 296 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT 296 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC
Confidence 74 54322222111111111225688999999994 4 5666789999999972 3556667777777899999999
Q ss_pred CCEEEEEcc-CCcEEEEEeec
Q 003467 306 HNRVFSTGS-DGQVILYKASC 325 (817)
Q Consensus 306 ~~~l~~~~~-dg~i~iw~~~~ 325 (817)
|++|++++. ++.|.+|+++.
T Consensus 297 g~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp SSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEcCCCcEEEEEEeC
Confidence 999988776 58999997653
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=219.86 Aligned_cols=332 Identities=11% Similarity=0.053 Sum_probs=215.0
Q ss_pred EEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCc---eEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 65 SLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDF---SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 65 ~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
+++|+|||++ +++ +.|++|.+||+.+++....+..+.. .+.+++|||||
T Consensus 20 ~~~~s~dg~~------~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg--------------------- 71 (719)
T 1z68_A 20 FPNWISGQEY------LHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR--------------------- 71 (719)
T ss_dssp CCEESSSSEE------EEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS---------------------
T ss_pred ccEECCCCeE------EEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC---------------------
Confidence 7799999964 554 4699999999999998887776654 38999999999
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeC---------CCcEEEEEecCCCceeEeeccCCccceEEEEEEc
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD---------DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS 212 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s 212 (817)
++|+.++. ++.|++||+.+++.+. ...+ ...+.+++||
T Consensus 72 -----------------------------~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-~~~l---~~~~~~~~~S 118 (719)
T 1z68_A 72 -----------------------------QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-GNEL---PRPIQYLCWS 118 (719)
T ss_dssp -----------------------------SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC---CSSBCCEEEC
T ss_pred -----------------------------CeEEEEecCceeEEeecceEEEEEECCCCcccc-ceec---CcccccceEC
Confidence 46776665 7899999998664310 0112 2468899999
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeE-----------------EEeEEecCC-eEEEEcCCC
Q 003467 213 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI-----------------WSLLSLRCG-TLVSADSTG 274 (817)
Q Consensus 213 ~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v-----------------~~v~~~~~~-~l~s~~~dg 274 (817)
|||++|+++. ++.|++||+.+++....... ++...| .+++|+||| .|++++.|.
T Consensus 119 PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 119 PVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-------GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp SSTTCEEEEE-TTEEEEESSTTSCCEECCCC-------CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred CCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-------CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 9999999986 67999999998876532211 222212 489999999 677766442
Q ss_pred ----------------------------------cEEEEeCCCCeEE---E-----EeecCccCeeEEEEecCCCEEEEE
Q 003467 275 ----------------------------------SVQFWDSRHGTLL---Q-----AHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 275 ----------------------------------~i~iwd~~~~~~~---~-----~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
.|++||+.+++.. . .+..|...+..++|+||++.+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW 270 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE
Confidence 7889999987653 1 234578889999999998777664
Q ss_pred ccC----CcEEEEE----eecccCCCCCCCCCccccceEEEeecc----ccCCCccc-----eeEeecccCCCCCCCccc
Q 003467 313 GSD----GQVILYK----ASCESIGPNDGLSSSEVIKKWIYVGSV----RAHTHDVR-----ALTVAVPISREDPLPEDK 375 (817)
Q Consensus 313 ~~d----g~i~iw~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~-----~l~~~~~~~~~~~~~~~~ 375 (817)
... ..|.+|+ ..+++ ....+ ..|...+. .++|+ ||++
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~s---------pdg~ 324 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTWD-----------------CPKTQEHIEESRTGWAGGFFVSTPVFS---------YDAI 324 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSEE-----------------CCGGGEEEEECSSSCSSSSSCCCCEEC---------TTSS
T ss_pred eccccCeEEEEEEcccCCCCCCc-----------------eEEEEecccccCCceEccccCCccEEC---------CCCC
Confidence 332 2477888 55544 22222 35555565 67776 7775
Q ss_pred cccccCCCCCccccccccccCCCcEEE-EecCCC--eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEE
Q 003467 376 VKRSRGREKPIDFSYHKWAHLGVPMLI-SAGDDT--KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ 452 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 452 (817)
.+++ +...++ .|.+|++....
T Consensus 325 -----------------------~l~~~~~~~~g~~~l~~~~~~~~~--------------------------------- 348 (719)
T 1z68_A 325 -----------------------SYYKIFSDKDGYKHIHYIKDTVEN--------------------------------- 348 (719)
T ss_dssp -----------------------CEEEEEECTTSCEEEEEESSCSTT---------------------------------
T ss_pred -----------------------eEEEEEEccCCceEEEEEECCCCc---------------------------------
Confidence 2223 344555 44555543311
Q ss_pred eCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEE-EcC-----CceEEEEeecCCCCC
Q 003467 453 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDH-----VKPSLFELKKGKVGQ 526 (817)
Q Consensus 453 ~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~-----~~i~l~~~~~~~~~~ 526 (817)
...+. .+...+..+.++ +++.+++ +.+ +..++|.+.......
T Consensus 349 ------------------------------~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (719)
T 1z68_A 349 ------------------------------AIQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP 396 (719)
T ss_dssp ------------------------------CEECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC
T ss_pred ------------------------------eEecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC
Confidence 00010 112335555666 7776666 443 778999987522111
Q ss_pred ceEEEeeecCCccccceeEEEEecCCCEEEEEec-C--CcEEEEEccCCceeeeecc
Q 003467 527 GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-D--RRIYVVDVSSSELLHTFTP 580 (817)
Q Consensus 527 ~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~~ 580 (817)
..-.+ ...+.++...+..+.|+||+++++.... . ..+++||+.+++.+..+..
T Consensus 397 ~~~~l-~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~~ 452 (719)
T 1z68_A 397 SKKCV-TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILEE 452 (719)
T ss_dssp CEEES-STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEEC
T ss_pred Cceec-cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEeec
Confidence 11000 0112224456788999999998886432 2 4689999988886665553
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1e-20 Score=195.87 Aligned_cols=268 Identities=14% Similarity=0.129 Sum_probs=195.9
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCC-cEEEEEEeecCCCCCCCceE-EEeeCCCeEEEEECCCCeEEEE
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKS-RISSLVWCHAGKMGLPGGRL-FSSSIDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~-~V~~l~~s~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~ 103 (817)
++|++++.++.|.+||+.+++ ....+...+.. .+.+++|+|+++. | ++++.++.|.+||+.+++.+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~------l~v~~~~~~~v~~~d~~~~~~~~~ 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA----VDKVITIADAGPTPMVPMVAPGGRI------AYATVNKSESLVKIDLVTGETLGR 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE----EEEEEECTTCTTCCCCEEECTTSSE------EEEEETTTTEEEEEETTTCCEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCc----EEEEEEcCCCCCCccceEEcCCCCE------EEEEeCCCCeEEEEECCCCCeEee
Confidence 478899999999999999876 34555433222 4789999999975 5 4556678999999999998877
Q ss_pred Eeec-----CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-
Q 003467 104 LQSI-----DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC- 177 (817)
Q Consensus 104 ~~~~-----~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 177 (817)
+... ...+..++|+|++. +++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~s~dg~--------------------------------------------------~l~~~~~ 101 (337)
T 1pby_B 72 IDLSTPEERVKSLFGAALSPDGK--------------------------------------------------TLAIYES 101 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSS--------------------------------------------------EEEEEEE
T ss_pred EEcCCcccccccccceEECCCCC--------------------------------------------------EEEEEec
Confidence 7632 22577899999983 666664
Q ss_pred -----------CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 178 -----------DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 178 -----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
.++.|.+||+.+++.. ..+.. ...+.+++|+|||++|+++ ++.|.+||+.+++....+....
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~---~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~- 174 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRR---KAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS- 174 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEE---EEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-
T ss_pred ccccccccccccCceEEEEECCCCcEE---EEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-
Confidence 5799999999865544 22222 3457789999999988888 6899999999998877665311
Q ss_pred CCCCCCceeEEEeEEecCCe-EEEEc-CCC-----------------------cEEEEeCCCCeEE-EEeecCccCeeEE
Q 003467 247 GLGSGPELCIWSLLSLRCGT-LVSAD-STG-----------------------SVQFWDSRHGTLL-QAHSFHKGDVNAL 300 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~~-l~s~~-~dg-----------------------~i~iwd~~~~~~~-~~~~~h~~~v~~l 300 (817)
... .+.|+|++. ++..+ .++ .|.+||..+++.. ..+..+...+.++
T Consensus 175 -----~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 175 -----WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246 (337)
T ss_dssp -----TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred -----cCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE
Confidence 011 226778873 33322 222 4689999998764 2334566678899
Q ss_pred EEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccccc
Q 003467 301 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR 380 (817)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 380 (817)
+|+||+++++++ ++.|.+||+.+++ .+..+.. ...+.+++++ |+++
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~~-----------------~~~~~~~-~~~~~~~~~s---------~dg~----- 292 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKNA-----------------SIKRVPL-PHSYYSVNVS---------TDGS----- 292 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTTE-----------------EEEEEEC-SSCCCEEEEC---------TTSC-----
T ss_pred EECCCCCEEEEe--CCeEEEEECCCCc-----------------CcceecC-CCceeeEEEC---------CCCC-----
Confidence 999999999988 7899999998765 3333332 2457788887 7876
Q ss_pred CCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccccc
Q 003467 381 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~ 421 (817)
+|++++.++.|.+||+.+.+..
T Consensus 293 -------------------~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 -------------------TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp -------------------EEEEESBSSEEEEEETTTCCEE
T ss_pred -------------------EEEEEcCCCcEEEEECcCCcEE
Confidence 8888889999999999876543
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=3.9e-19 Score=204.00 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=165.6
Q ss_pred ceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCC----cEEEEEEeecCCCCCCCceEEEeeCC---
Q 003467 15 PVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKS----RISSLVWCHAGKMGLPGGRLFSSSID--- 87 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~----~V~~l~~s~~~~~~~~~~~l~s~~~d--- 87 (817)
...+++|+|||++|+++ ||+|.+||+.+++ +...+.++... ....++|||||++ |+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg~~------l~~~~~~~~~ 85 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDGQF------ILLEYNYVKQ 85 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTSSE------EEEEEEEEEC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCc----eEEEEechhhhhhcccccceEECCCCCE------EEEEECCeee
Confidence 46689999999999986 8999999999987 45666666322 2345899999988 8888775
Q ss_pred ------CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 88 ------GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 88 ------~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+.+.+||+.+++.. .+..+.+.+...+|||||.
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---------------------------------------- 124 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---------------------------------------- 124 (740)
T ss_dssp SSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTT----------------------------------------
T ss_pred EEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCC----------------------------------------
Confidence 56679999999865 4666778899999999994
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceE-----------------EEEEEccCCCEEEEeeCC
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV-----------------LSVTWSADGNMLYSGSSD 224 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----------------~~v~~s~dg~~l~s~~~d 224 (817)
.||.+ .++.|++|++.++.... .+..++...+ .+++|||||++|+.++.|
T Consensus 125 ----------~la~~-~~~~i~~~~~~~~~~~~--lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d 191 (740)
T 4a5s_A 125 ----------KLAYV-WNNDIYVKIEPNLPSYR--ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (740)
T ss_dssp ----------CEEEE-ETTEEEEESSTTSCCEE--CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ----------EEEEE-ECCeEEEEECCCCceEE--EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc
Confidence 66666 46899999998665432 2233443333 358999999999998766
Q ss_pred Cc-EEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCC---Ce--EEEEee------c
Q 003467 225 GY-IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH---GT--LLQAHS------F 292 (817)
Q Consensus 225 g~-i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~---~~--~~~~~~------~ 292 (817)
.. +.+|++...... ..+...+..+.+...|.- .....|.+||+.+ ++ ....+. +
T Consensus 192 ~~~v~~~~~~~~~~~-----------~~~~~~~~~~~yp~~G~~---~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~ 257 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDE-----------SLQYPKTVRVPYPKAGAV---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (740)
T ss_dssp CTTCCEEEEEECCST-----------TCSSCEEEEEECCBTTSC---CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred ccCCceEEEEeecCC-----------CCCCCcceeecCCCCcCc---CCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence 44 888875321100 013445666777766621 1122689999998 73 223333 3
Q ss_pred CccCeeEEEEecCCCEEEEEcc----CCcEEEEEeeccc
Q 003467 293 HKGDVNALAAAPSHNRVFSTGS----DGQVILYKASCES 327 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 327 (817)
|...+..++|+|||+.++.... +..|.+||+.+++
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 7778999999999996665433 3479999998865
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=4.6e-20 Score=192.07 Aligned_cols=288 Identities=14% Similarity=0.131 Sum_probs=192.4
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-EeeCCCeEEEEEC
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF-SSSIDGSVSEWDL 95 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~-s~~~d~~i~vwd~ 95 (817)
+.++++++++++++++.++.|.+||..+++ ....+..+....+..++|+|++++ ++ +...++.|.+||+
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~------~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDT----VYKSCVMPDKFGPGTAMMAPDNRT------AYVLNNHYGDIYGIDL 72 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTE----EEEEEECSSCCSSCEEEECTTSSE------EEEEETTTTEEEEEET
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCc----EEEEEecCCCCCCceeEECCCCCE------EEEEeCCCCcEEEEeC
Confidence 356789999999999999999999999876 455565442236789999999975 54 5557899999999
Q ss_pred CCCeEEEEEeecC------ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 96 YDLKQKIVLQSID------FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 96 ~~~~~~~~~~~~~------~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
.+++.+..+.... ..+..++|+|++
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg------------------------------------------------- 103 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDG------------------------------------------------- 103 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTS-------------------------------------------------
T ss_pred CCCcEEEEEEcccccccccccccceEECCCC-------------------------------------------------
Confidence 9999887776332 337889999998
Q ss_pred CCEEEEEeCC------------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce
Q 003467 170 DRRVALACDD------------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 237 (817)
Q Consensus 170 ~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~ 237 (817)
+++++++.+ +.|.+||+.++........+. +...+.+++|+|||+ +++++ +.|.+||+.+++.
T Consensus 104 -~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 104 -KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp -SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred -CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 466766654 899999998654332222232 233688999999999 55554 3599999999988
Q ss_pred EEEEEeecCCC----------------CCCCceeEEEeEEecCCeE--EEEcCCCcEEEEeCCCCeEE-EEeecCccCee
Q 003467 238 IYRITVGLGGL----------------GSGPELCIWSLLSLRCGTL--VSADSTGSVQFWDSRHGTLL-QAHSFHKGDVN 298 (817)
Q Consensus 238 ~~~~~~~~~~~----------------~~~~~~~v~~v~~~~~~~l--~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~ 298 (817)
+..+....... ..........+++++++.. ........+..+|..+++.. ..+..+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 258 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence 87765321000 0000013445666654410 00000011222444443321 12223566788
Q ss_pred EEEEec-CCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccc
Q 003467 299 ALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 299 ~l~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
.++|+| ++++++++ ++.|.+||+.+++ .+..+.. ...+.+++++ |+++
T Consensus 259 ~~~~sp~dg~~l~~~--~~~v~~~d~~~~~-----------------~~~~~~~-~~~~~~~~~s---------~dg~-- 307 (349)
T 1jmx_B 259 TGLRSPKDPNQIYGV--LNRLAKYDLKQRK-----------------LIKAANL-DHTYYCVAFD---------KKGD-- 307 (349)
T ss_dssp EEEECSSCTTEEEEE--ESEEEEEETTTTE-----------------EEEEEEC-SSCCCEEEEC---------SSSS--
T ss_pred eeEecCCCCCEEEEE--cCeEEEEECccCe-----------------EEEEEcC-CCCccceEEC---------CCCC--
Confidence 999999 99999988 8899999998766 3333332 3457788887 7775
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccccc
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~ 421 (817)
.|++++.++.|.+||..+.+..
T Consensus 308 ----------------------~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 308 ----------------------KLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp ----------------------CEEEESBSSEEEEEETTTTEEE
T ss_pred ----------------------EEEEecCCCeEEEEecccccee
Confidence 6777888999999999876533
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=4.9e-19 Score=184.26 Aligned_cols=299 Identities=11% Similarity=0.021 Sum_probs=194.2
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e-EEEEcCCCcEEEEeCCCCe
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~~dg~i~iwd~~~~~ 285 (817)
.+++++++.++++++.++.|.+||+.+++.+..+.. +....+..++|+|++ . +++...++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 456888899999999999999999999998888873 121246789999999 3 4566678999999999999
Q ss_pred EEEEeecCc------cCeeEEEEecCCCEEEEEccC------------CcEEEEEeecccCCCCCCCCCccccceEEEee
Q 003467 286 LLQAHSFHK------GDVNALAAAPSHNRVFSTGSD------------GQVILYKASCESIGPNDGLSSSEVIKKWIYVG 347 (817)
Q Consensus 286 ~~~~~~~h~------~~v~~l~~s~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (817)
.+..+..+. ..+..++|+|||++|++++.+ +.|.+||+.+++... .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------~~~ 142 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--------------PVR 142 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--------------CSE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--------------eee
Confidence 887776432 337899999999999998865 899999998754210 111
Q ss_pred ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccC
Q 003467 348 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC 427 (817)
Q Consensus 348 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~ 427 (817)
... +...+.+++++ |+++ +++ ++. .|.+||..+.+........
T Consensus 143 ~~~-~~~~~~~~~~s---------~dg~------------------------l~~-~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 143 TFP-MPRQVYLMRAA---------DDGS------------------------LYV-AGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp EEE-CCSSCCCEEEC---------TTSC------------------------EEE-ESS--SEEEECTTTCCEEEEECST
T ss_pred ecc-CCCcccceeEC---------CCCc------------------------EEE-ccC--cEEEEeCCCCceecccccc
Confidence 112 23357788887 7764 444 333 3999998765422211100
Q ss_pred CCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEE-
Q 003467 428 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF- 506 (817)
Q Consensus 428 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l- 506 (817)
. ...+ ....++. +.+|...... ... ....++++++++...
T Consensus 186 ~-~~~~-------~~~~~~~---------~~~~~~~~~~---------------~~~-------~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 186 N-WNRK-------GYSAPDV---------LYFWPHQSPR---------------HEF-------SMLYTIARFKDDKQDP 226 (349)
T ss_dssp T-CCCT-------TBCCCBC---------CCCCCCCCTT---------------CEE-------EEEEEEEEC-------
T ss_pred c-cCCc-------cccCccc---------eeeecCCCcc---------------eeE-------EeeeeeeecCCCcCCc
Confidence 0 0000 0000000 0001000000 000 012345555544211
Q ss_pred ----------EE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec-CCCEEEEEecCCcEEEEEccCCce
Q 003467 507 ----------AY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSEL 574 (817)
Q Consensus 507 ----------a~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~ 574 (817)
.. ...+.++++++.. ....+..++|+| |+++|+++ ++.|++||+.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFAD-----------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEE-----------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred cccccceeEEEEeccCCcEEeccccc-----------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 11 1223444443321 223578899999 99999988 88999999999998
Q ss_pred eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecC
Q 003467 575 LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~ 634 (817)
+..+.. ...+.+++|+|||++|++++.++.|.+||+++++....++..
T Consensus 288 ~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 288 IKAANL------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEC------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEcC------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 888763 345789999999999999988999999999999877766543
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.4e-20 Score=213.17 Aligned_cols=328 Identities=11% Similarity=0.012 Sum_probs=200.8
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccc---eEEEEEEccCCCEEEEeeC---------CCcEEEEECCCCceEE
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSG---RVLSVTWSADGNMLYSGSS---------DGYIRSWDAKLGYEIY 239 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~dg~~l~s~~~---------dg~i~vwd~~~g~~~~ 239 (817)
.++..+.|+.|++||+.+++.. ..+.+|.. .+.+++|||||++|++++. ++.|++||+.+++.+.
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQSY---TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCEE---EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred eEEEEcCCCCEEEEEcCCCcEE---EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 4455557999999999877654 33444433 3899999999999999876 7899999999887521
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEe-ecCccCe-----------------eEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDV-----------------NAL 300 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v-----------------~~l 300 (817)
... ....+..++|+||| .|+.+ .++.|++||+.+++..+.. .++...| .++
T Consensus 105 ~~~---------l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 105 GNE---------LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp SSC---------CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred cee---------cCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 111 12347889999999 56665 4789999999988765433 2222222 489
Q ss_pred EEecCCCEEEEEccCC----------------------------------cEEEEEeecccCCCCCCCCCccccceEEEe
Q 003467 301 AAAPSHNRVFSTGSDG----------------------------------QVILYKASCESIGPNDGLSSSEVIKKWIYV 346 (817)
Q Consensus 301 ~~s~~~~~l~~~~~dg----------------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (817)
+|||||++|++++.|. .|++||+.++... .+..+
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~------------~~~~~ 242 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV------------GPQEV 242 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH------------CCEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc------------ceeEc
Confidence 9999999999987652 5666666554310 00001
Q ss_pred ---eccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC--C--CeEEEEe----C
Q 003467 347 ---GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--D--TKLFAYC----A 415 (817)
Q Consensus 347 ---~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d--g~i~~~~----~ 415 (817)
..+..|...+..++|+ ||++ ++++... + ..|.+|| .
T Consensus 243 ~~~~~~~~~~~~~~~~~~S---------pD~~------------------------~~~~~~~~~~~~~~l~~~d~~~~~ 289 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWV---------TDER------------------------VCLQWLKRVQNVSVLSICDFREDW 289 (719)
T ss_dssp CCCHHHHTSCEEEEEEEES---------SSSE------------------------EEEEEEESSTTEEEEEEEEECSSS
T ss_pred cCCccCCCCcceEEEeEEe---------CCCe------------------------EEEEEeccccCeEEEEEEcccCCC
Confidence 1234566667777776 6654 5555322 1 2355666 3
Q ss_pred CcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeE
Q 003467 416 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII 495 (817)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 495 (817)
.+..... .+......+...+.
T Consensus 290 ~~g~~~~-----------------------------------------------------------~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 290 QTWDCPK-----------------------------------------------------------TQEHIEESRTGWAG 310 (719)
T ss_dssp SSEECCG-----------------------------------------------------------GGEEEEECSSSCSS
T ss_pred CCCceEE-----------------------------------------------------------EEecccccCCceEc
Confidence 3221000 00000011122233
Q ss_pred -----EEEecCCCcEEEE--E-cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecC-----C
Q 003467 496 -----CSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD-----R 562 (817)
Q Consensus 496 -----~~~~s~~g~~la~--~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~d-----g 562 (817)
.++|||||+.+++ + .++...||.++.. .+. . ..+..+...+..+.++ |++.|+..+.+ +
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~-~~~-~-----~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT-VEN-A-----IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC-STT-C-----EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECC-CCc-e-----EecccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence 6789999986554 3 4455556655431 122 1 2233344457777888 88888877765 7
Q ss_pred cEEEEEccC--Cce-eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CC--CcEEEEECCCcceEEEE
Q 003467 563 RIYVVDVSS--SEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CF--GDVYIFNLEIQRQHWFI 631 (817)
Q Consensus 563 ~i~v~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~d--g~i~vwd~~~~~~~~~~ 631 (817)
.+++|.+.. +.. ...+.. .+..+...+..+.|||||++|+... .. ..+.+||+.+++....+
T Consensus 383 ~~~l~~~~~~~g~~~~~~l~~-------~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 383 RRNIYRISIGSYPPSKKCVTC-------HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp CBEEEEEECSSSSCCEEESST-------TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred eEEEEEEeCCCCCCCceeccC-------ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 788888753 321 223321 0111456788899999999887543 33 46889999888754443
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1e-18 Score=185.72 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=157.7
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe----------EEE-----EEeecCceEEEEeeecCCCccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK----------QKI-----VLQSIDFSIWQMAVAPSNSSLM 124 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----------~~~-----~~~~~~~~i~~~~~s~~~~~~~ 124 (817)
...+..|++++++.+ |++++.++ |++|+..... .+. ..-.+...|.+++|+|++
T Consensus 36 ~~~~n~lavs~~~~~------l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---- 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGL------VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---- 104 (434)
T ss_dssp CSCCBCEEEETTTTE------EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS----
T ss_pred CCCccEEEEecCCCE------EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC----
Confidence 346789999999877 99998887 8998753210 011 111356789999999998
Q ss_pred eeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE----EEeCCCcEEEEEecCC--------Cc
Q 003467 125 HAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA----LACDDGCVRIYRITDS--------DE 192 (817)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~ 192 (817)
++|+ +|+.|+.|+|||+.+. +.
T Consensus 105 ----------------------------------------------~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~ 138 (434)
T 2oit_A 105 ----------------------------------------------LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRP 138 (434)
T ss_dssp ----------------------------------------------CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCC
T ss_pred ----------------------------------------------CEEEEEEeccCCCceEEEEEccccccCCcCCcce
Confidence 4777 7888999999999754 22
Q ss_pred eeEeeccCCccceEEEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEE
Q 003467 193 LIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA 270 (817)
Q Consensus 193 ~~~~~~~~~h~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~ 270 (817)
+.....+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+.... +|...|.+++|+|+| .|++|
T Consensus 139 ~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~--------~~~~~v~~v~wspdg~~lasg 210 (434)
T 2oit_A 139 FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL--------PSTVAVTSVCWSPKGKQLAVG 210 (434)
T ss_dssp SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE--------CGGGCEEEEEECTTSSCEEEE
T ss_pred eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc--------CCCCceeEEEEcCCCCEEEEE
Confidence 3334677889999999999998 8899999999999999999986665554 578899999999999 79999
Q ss_pred cCCCcEEEEeCCCCeEEEEeecCc-------cCeeEEEEecCCCEEEEEc-cCC------cEEEEEeeccc
Q 003467 271 DSTGSVQFWDSRHGTLLQAHSFHK-------GDVNALAAAPSHNRVFSTG-SDG------QVILYKASCES 327 (817)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~~~~-~dg------~i~iw~~~~~~ 327 (817)
+.||.|++||.+ ++....+..|. ..|.+++|++++.++++.+ .|| .+++|++....
T Consensus 211 s~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 211 KQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp ETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 999999999998 66666665442 3799999999887775532 343 38899987643
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=3.2e-19 Score=204.77 Aligned_cols=383 Identities=14% Similarity=0.120 Sum_probs=229.6
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceE-----EEEeeecCCCccceeeccCccccC
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSI-----WQMAVAPSNSSLMHAVTNSDHIGN 135 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~~~~~~~~~~~~~~ 135 (817)
....+++|+|||++ |+++ |++|.+||+.++++...+..|.... ..++|||||
T Consensus 17 ~~~~~~~w~~dg~~------~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------- 73 (740)
T 4a5s_A 17 LKLYSLRWISDHEY------LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--------------- 73 (740)
T ss_dssp CCCCCEEECSSSEE------EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS---------------
T ss_pred ccccccEECCCCcE------EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC---------------
Confidence 44568999999987 7775 8999999999999888888776432 347889999
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC---------CcEEEEEecCCCceeEeeccCCccceE
Q 003467 136 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD---------GCVRIYRITDSDELIYHRSLPRVSGRV 206 (817)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v 206 (817)
++|+.++.+ +.+++||+.+++. ..+..|.+.+
T Consensus 74 -----------------------------------~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l~~~~~~~ 114 (740)
T 4a5s_A 74 -----------------------------------QFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERIPNNT 114 (740)
T ss_dssp -----------------------------------SEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCCCTTE
T ss_pred -----------------------------------CEEEEEECCeeeEEEccceEEEEEECCCCcE----EEcccCCCcc
Confidence 466766665 6678999986643 5577788899
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeE
Q 003467 207 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL 286 (817)
Q Consensus 207 ~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (817)
..++|||||+.||.+. |+.|++|++.+++.. .++.. ++... +..|..+ .+|. +
T Consensus 115 ~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt~~------g~~~~-----------~~~g~~~---~v~~----e- 167 (740)
T 4a5s_A 115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RITWT------GKEDI-----------IYNGITD---WVYE----E- 167 (740)
T ss_dssp EEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCSC------CBTTT-----------EEESBCC---HHHH----H-
T ss_pred eeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEcCC------CCccc-----------eecCccc---cccc----c-
Confidence 9999999999999884 679999999887643 22210 11110 0000000 0000 0
Q ss_pred EEEeecCccCeeEEEEecCCCEEEEEccCC-cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeeccc
Q 003467 287 LQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI 365 (817)
Q Consensus 287 ~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 365 (817)
.--+....++|||||++|+.++.|. .+.+|++..... ...+...+..+.+.
T Consensus 168 -----e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~--------------------~~~~~~~~~~~~yp--- 219 (740)
T 4a5s_A 168 -----EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD--------------------ESLQYPKTVRVPYP--- 219 (740)
T ss_dssp -----HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS--------------------TTCSSCEEEEEECC---
T ss_pred -----hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC--------------------CCCCCCcceeecCC---
Confidence 0012345689999999999887654 488888764331 00223333344432
Q ss_pred CCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc---ccccCCcccCCCCCCCceeeeccee
Q 003467 366 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE---FTKFSPHEICPAPQRVPIHLVHNTI 442 (817)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (817)
..|. . .....|++||+.+ .....
T Consensus 220 ------~~G~-----------------------~-----~~~~~l~v~d~~~~~~~~~~~-------------------- 245 (740)
T 4a5s_A 220 ------KAGA-----------------------V-----NPTVKFFVVNTDSLSSVTNAT-------------------- 245 (740)
T ss_dssp ------BTTS-----------------------C-----CCEEEEEEEETTSCCSSSCCC--------------------
T ss_pred ------CCcC-----------------------c-----CCeeEEEEEECCCCCCCCcce--------------------
Confidence 1111 0 1112567777765 21000
Q ss_pred ecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeee-----cCCCCeEEEEecCCCcEEEEE-cC----C
Q 003467 443 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS-----KASRKIICSTISNSGMLFAYS-DH----V 512 (817)
Q Consensus 443 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~i~~~~~s~~g~~la~~-~~----~ 512 (817)
..++.. .+...+..++|||||++++.. .. .
T Consensus 246 ----------------------------------------~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~ 285 (740)
T 4a5s_A 246 ----------------------------------------SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS 285 (740)
T ss_dssp ----------------------------------------EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred ----------------------------------------EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence 001111 133557888999999976663 21 3
Q ss_pred ceEEEEeecCCCCCceEEEee-ecC--Cccccc-----eeEEEEecCCCEEE-EEec-CC--cEEEEEccCCceeeeecc
Q 003467 513 KPSLFELKKGKVGQGEWIINK-RQL--PRKLQF-----AHSMIFSYDSSQLI-IAGH-DR--RIYVVDVSSSELLHTFTP 580 (817)
Q Consensus 513 ~i~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~-----i~~~~fspd~~~l~-~~~~-dg--~i~v~d~~~~~~~~~~~~ 580 (817)
.|.+|++... ...|.... ..+ ..+... ...++|+|||+.|+ ..+. +| .|++||+.+++.. .+..
T Consensus 286 ~i~~~d~~tg---~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~ 361 (740)
T 4a5s_A 286 VMDICDYDES---SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK 361 (740)
T ss_dssp EEEEEEEETT---TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC
T ss_pred EEEEEECCCC---ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc
Confidence 6888888762 20000000 101 122222 23678999999887 6654 33 6888998766544 3332
Q ss_pred CcccccccCCCCCCceeEEEEccCCCEEEEEeCC-----C--cEEEEECCCcceEEEEecC---CCCCeEEEEecCCCCC
Q 003467 581 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-----G--DVYIFNLEIQRQHWFISRL---EGASVTAAGFPPQNNN 650 (817)
Q Consensus 581 ~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d-----g--~i~vwd~~~~~~~~~~~~~---~~~~i~~l~~sp~d~~ 650 (817)
....+..+. ++|++.|+..+.. + .|+..+++++.....+... .......+.|+| +++
T Consensus 362 -----------g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~-dg~ 428 (740)
T 4a5s_A 362 -----------GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK-EAK 428 (740)
T ss_dssp -----------SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECT-TSS
T ss_pred -----------CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECC-CCC
Confidence 344555543 2557766655543 2 4555566665443233211 235688999999 988
Q ss_pred eEEEEecC---CeEEEEEcCCCcc
Q 003467 651 VLIITTSS---NQVYVFDVEAKQL 671 (817)
Q Consensus 651 ~l~~~~~d---~~i~vwd~~~~~~ 671 (817)
+++..... ..+.+++..+++.
T Consensus 429 ~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 429 YYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp EEEEEECSBSSCEEEEEETTTTEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCcE
Confidence 87766544 3688888887643
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.5e-18 Score=178.58 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=171.2
Q ss_pred CCCceEEEEECCCCCeEEEEecC----CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-C
Q 003467 12 KPSPVVALATSADDSQVAAARED----GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-I 86 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~ 86 (817)
+......++|||||++|++++.+ +.|.+|++....-..........+ ......+++ ++++ |++++ .
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~-~~~p~~~~~--dg~~------l~~~~~~ 118 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM-GADPCYLTT--NGKN------IVTANYS 118 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS-SSCEEEEEE--CSSE------EEEEETT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC-CCCcEEEEE--CCCE------EEEEECC
Confidence 56777889999999999998875 799999987631112233344433 456777887 7765 77666 5
Q ss_pred CCeEEEEECCCCeEEEE----E--ee--------cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccc
Q 003467 87 DGSVSEWDLYDLKQKIV----L--QS--------IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 152 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~----~--~~--------~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (817)
+++|.+|++.....+.. + .+ +...+.+++|+|++..
T Consensus 119 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~------------------------------ 168 (361)
T 3scy_A 119 GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY------------------------------ 168 (361)
T ss_dssp TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE------------------------------
T ss_pred CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE------------------------------
Confidence 78999999975432211 1 11 1233578999999832
Q ss_pred cCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCc------eeEe----eccCCccceEEEEEEccCCCEEEEee
Q 003467 153 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE------LIYH----RSLPRVSGRVLSVTWSADGNMLYSGS 222 (817)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~----~~~~~h~~~v~~v~~s~dg~~l~s~~ 222 (817)
.+++...++.|++|++..... +... .....+...+.+++|+|||++|++++
T Consensus 169 -------------------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 229 (361)
T 3scy_A 169 -------------------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN 229 (361)
T ss_dssp -------------------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred -------------------EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc
Confidence 334445689999999975432 3211 11223345678999999999888777
Q ss_pred -CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC--CCcEEEEeCC--CCe--EEEEeecCc
Q 003467 223 -SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--TGSVQFWDSR--HGT--LLQAHSFHK 294 (817)
Q Consensus 223 -~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~--dg~i~iwd~~--~~~--~~~~~~~h~ 294 (817)
.++.|.+|++.+++.......... ..+......++|+||| .|+++.. ++.|.+|++. +++ .+..+.. .
T Consensus 230 ~~~~~v~v~~~~~g~~~~~~~~~~~---~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 230 EIGGTVIAFRYADGMLDEIQTVAAD---TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp TTTCEEEEEEEETTEEEEEEEEESC---SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred CCCCeEEEEEecCCceEEeEEEecC---CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 589999999987754322221111 1233456899999999 4545444 5889999985 454 4455554 5
Q ss_pred cCeeEEEEecCCCEEEEEc-cCCcEEEEEeec
Q 003467 295 GDVNALAAAPSHNRVFSTG-SDGQVILYKASC 325 (817)
Q Consensus 295 ~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~ 325 (817)
..+..++|+|||++|++++ .++.|.+|+++.
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 6788999999999998887 578999987753
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=2.3e-17 Score=172.27 Aligned_cols=304 Identities=11% Similarity=0.046 Sum_probs=189.5
Q ss_pred CCCcEEEEeC--CCCeEEEEeecCccCeeEEEEecCCCEEEEEccC----CcEEEEEeecccCCCCCCCCCccccceEEE
Q 003467 272 STGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD----GQVILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 272 ~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
.++.|.+|++ .+++.......+...+..++|+|||++|++++.+ +.|.+|++.... .....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-------------g~~~~ 91 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-------------GTLHL 91 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-------------TEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-------------CcEEE
Confidence 3567888865 5565543322267788889999999999998875 799999987642 01113
Q ss_pred eeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcc
Q 003467 346 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE 425 (817)
Q Consensus 346 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~ 425 (817)
+.....+......+++ +++ .++++...++.+.+|++.....+....
T Consensus 92 ~~~~~~~~~~p~~~~~-----------dg~-----------------------~l~~~~~~~~~v~~~~~~~~g~~~~~~ 137 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT-----------NGK-----------------------NIVTANYSGGSITVFPIGQDGALLPAS 137 (361)
T ss_dssp EEEEECSSSCEEEEEE-----------CSS-----------------------EEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred eeEeccCCCCcEEEEE-----------CCC-----------------------EEEEEECCCCEEEEEEeCCCCcCcccc
Confidence 3333333334444443 221 244455578899999997544332211
Q ss_pred c-------CCCCCCCceeeecceeecCCeEEEE-Ee--CCeEEEEEecccCCcccCCCCCCCCc-cce---eeeeeecCC
Q 003467 426 I-------CPAPQRVPIHLVHNTIFSHTSLLLV-QY--SCRLDILSVRLENNVESRSSSGGHAS-TSL---LVQVKSKAS 491 (817)
Q Consensus 426 ~-------~~~~~~~~~~~~~~~~~s~~~~~l~-~~--~~~i~i~~~~~~~~~~~~~~~~g~~~-~~~---~~~~~~~~~ 491 (817)
. .+.+.+.....+..++|+|+++.++ .. .+.+.+|++....... ... ... .........
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~ 210 (361)
T 3scy_A 138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD-------NKEKFLTKGTPEAFKVAPG 210 (361)
T ss_dssp EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT-------TCCCCEEEEEEEEEECCTT
T ss_pred eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc-------cccceeecccccceecCCC
Confidence 0 0111222233456799999997554 33 3489999987543200 000 000 123334445
Q ss_pred CCeEEEEecCCCcEEEEE--cCCceEEEEeecCCCCCceEEEee-ecCCccccceeEEEEecCCCEEEEEecC--CcEEE
Q 003467 492 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHD--RRIYV 566 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspd~~~l~~~~~d--g~i~v 566 (817)
.....++|+|||++++++ .++.+.+|++.. +. +-.+.. ...+.+......++|+|||++|+++..+ +.|.+
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---Cc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 667899999999987775 468999999974 21 111111 2234444567899999999999777654 88999
Q ss_pred EEcc--CCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe-CCCcEEEEEC--CCcceEEEEecCCCCCe
Q 003467 567 VDVS--SSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHWFISRLEGASV 639 (817)
Q Consensus 567 ~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~i 639 (817)
|++. +++ .+..+. ....+..++|||||++|++++ .++.|.+|++ ++++........+...+
T Consensus 287 ~~~~~~~g~~~~~~~~~------------~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQL------------TGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp EEECTTTCCEEEEEEEE------------CSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred EEEcCCCCcEEEeeEec------------CCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 9995 454 333333 234678999999999999888 6788999654 56665433323333578
Q ss_pred EEEEec
Q 003467 640 TAAGFP 645 (817)
Q Consensus 640 ~~l~~s 645 (817)
+|+.|.
T Consensus 355 ~~v~~~ 360 (361)
T 3scy_A 355 VCLKFV 360 (361)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 899886
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=6.4e-19 Score=186.37 Aligned_cols=272 Identities=7% Similarity=-0.036 Sum_probs=172.7
Q ss_pred eeeeeccCCCceEE-----EEECCCCCeEEEEec-CCc--EEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCC
Q 003467 5 RNSSIDWKPSPVVA-----LATSADDSQVAAARE-DGS--LEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGL 76 (817)
Q Consensus 5 r~r~~~~h~~~I~~-----la~spdg~~la~~~~-dg~--i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~ 76 (817)
+.+.+..|+..... .+|||||++||+++. +|. |.+||+.+++ ......++ ...+.+++|+|||+.
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~----~~~lt~~~-~~~~~~~~~spdg~~-- 94 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV----ATQLTEGR-GDNTFGGFLSPDDDA-- 94 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE----EEECCCSS-CBCSSSCEECTTSSE--
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc----eEEeeeCC-CCCccceEEcCCCCE--
Confidence 34556667766666 899999999999887 664 8888988876 23333333 445556789999987
Q ss_pred CCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEe--eecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 77 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMA--VAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 77 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
|+.++.++.|.+||+.+++....+..+...+.... +++++..++......... .+
T Consensus 95 ----l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~-------------------~~ 151 (388)
T 3pe7_A 95 ----LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW-------------------VP 151 (388)
T ss_dssp ----EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC-------------------CC
T ss_pred ----EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc-------------------cc
Confidence 99999999999999999998877776766664444 478875432111000000 00
Q ss_pred CCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCC------CcE
Q 003467 155 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSD------GYI 227 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~d------g~i 227 (817)
.. ...... ..+....+..|++||+.+++. +.+..+...+..++|+| ||+.|+.+..+ ..|
T Consensus 152 ~~--~~~~~~-------~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 152 LT--DWKKFH-------EFYFTKPCCRLMRVDLKTGES----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp CC--SHHHHH-------HHGGGCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred cc--ccchhh-------hhhccCCcceEEEEECCCCce----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 00 000000 000122346789999986643 34445667899999999 99999887763 378
Q ss_pred EEEECCCCceEEEEEeecCCCCCCC-ceeEEEeEEecCC-eEEEEcC--CC---cEEEEeCCCCeEE--EEeecCcc---
Q 003467 228 RSWDAKLGYEIYRITVGLGGLGSGP-ELCIWSLLSLRCG-TLVSADS--TG---SVQFWDSRHGTLL--QAHSFHKG--- 295 (817)
Q Consensus 228 ~vwd~~~g~~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~s~~~--dg---~i~iwd~~~~~~~--~~~~~h~~--- 295 (817)
.++|...+. ...+.. .. ...+..++|+||| .|+..+. ++ .|.+||+.+++.. ..+..+..
T Consensus 219 ~~~d~~~~~-~~~l~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 290 (388)
T 3pe7_A 219 WLINEDGTN-MRKVKT-------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS 290 (388)
T ss_dssp EEEETTSCC-CEESCC-------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred EEEeCCCCc-eEEeee-------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence 888876554 333331 12 2467889999999 4544332 22 3999999988743 33332110
Q ss_pred CeeEEEEecCCCEEEEE---------ccCCcEEEEEeeccc
Q 003467 296 DVNALAAAPSHNRVFST---------GSDGQVILYKASCES 327 (817)
Q Consensus 296 ~v~~l~~s~~~~~l~~~---------~~dg~i~iw~~~~~~ 327 (817)
....++|+|||+.|+.. ..+..|++|++.++.
T Consensus 291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 12224799999988854 456789999988764
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1.6e-18 Score=181.01 Aligned_cols=252 Identities=12% Similarity=0.062 Sum_probs=174.1
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecC-CCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-------
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVS-PGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS------- 85 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~------- 85 (817)
..+..++|+|||++|++++.+ .|.+|++. +++. ........+ +.+.+++|+|||++ ..+++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--~~~~~~~~~--g~~~~~~~spdg~~----l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--VHEASHPIG--GHPRANDADTNTRA----IFLLAAKQPPYAVY 110 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--EEEEEEECC--SSGGGGCTTSCCEE----EEEEECSSTTCCEE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--EEeeEeecC--CCCccEEECCCCCE----EEEEEecCCcceec
Confidence 468899999999999998887 89999997 6652 111122221 23556899999973 1155553
Q ss_pred ------CCCeEEEEECC-CCeEEEEEee----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 86 ------IDGSVSEWDLY-DLKQKIVLQS----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 86 ------~d~~i~vwd~~-~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
.++++.+|++. +|+....+.. +...+.+++|+|+|
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG---------------------------------- 156 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE---------------------------------- 156 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS----------------------------------
T ss_pred cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC----------------------------------
Confidence 68999999997 5766554442 56789999999999
Q ss_pred CCCCCccccccccccCCEEEEEe-CCCcEEEEEec-CCCceeEeeccC--CccceEEEEEEccCCCEEEEeeC-CCcEEE
Q 003467 155 NDSDSDELHEQSVVEDRRVALAC-DDGCVRIYRIT-DSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSS-DGYIRS 229 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~~~-dg~i~v 229 (817)
++++++. .++.|++|++. +++. .....+. .|...+..++|+|||++|++++. ++.|.+
T Consensus 157 ----------------~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 157 ----------------TYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ----------------SEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ----------------CEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 3566554 46899999997 4443 2222232 34567999999999999988775 689999
Q ss_pred EECC--CCceEE---EEEeecCCCCCCCce------eEEEeE-EecCC-eEEEEcCC-C-----cEEEEeCC-CCeEEE-
Q 003467 230 WDAK--LGYEIY---RITVGLGGLGSGPEL------CIWSLL-SLRCG-TLVSADST-G-----SVQFWDSR-HGTLLQ- 288 (817)
Q Consensus 230 wd~~--~g~~~~---~~~~~~~~~~~~~~~------~v~~v~-~~~~~-~l~s~~~d-g-----~i~iwd~~-~~~~~~- 288 (817)
|++. +|+... .+... .....++.. .+..++ |+||| .|++++.+ . .|.+|++. +++...
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLI-PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp EEECTTTCCEEEEEEEEESS-CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCcEEEccceEEcC-CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence 9765 566532 22211 000011222 588999 99999 45554432 2 89999986 566543
Q ss_pred --EeecCccCeeEEEEec---CCCEEEEEcc-CCcEEEEEeecc
Q 003467 289 --AHSFHKGDVNALAAAP---SHNRVFSTGS-DGQVILYKASCE 326 (817)
Q Consensus 289 --~~~~h~~~v~~l~~s~---~~~~l~~~~~-dg~i~iw~~~~~ 326 (817)
....+...+..++|+| ||++|++++. ++.|.+|++...
T Consensus 299 ~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2334555678899999 8999999887 489999998764
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1e-18 Score=195.35 Aligned_cols=268 Identities=11% Similarity=0.075 Sum_probs=191.3
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeC-CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSI-DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
...|.+++|+|||+. ||+++. ||++.+|++.+++..+....+...+..++|+||.
T Consensus 21 ~~~~~~~~~~~DG~~------la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~------------------ 76 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK------LLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR------------------ 76 (582)
T ss_dssp HSCEEEEEEEETTTE------EEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSE------------------
T ss_pred ccchheeecCCCCCe------EEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCe------------------
Confidence 457999999999988 998887 9999999997777655444344689999999982
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC---CCcEEEEEecC--CCceeEeeccCCccceEEEEEEcc
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD---DGCVRIYRITD--SDELIYHRSLPRVSGRVLSVTWSA 213 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~ 213 (817)
.++++.. +....||.+.. ..... .+.... .+...+|+|
T Consensus 77 ---------------------------------~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~ 119 (582)
T 3o4h_A 77 ---------------------------------VILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVD 119 (582)
T ss_dssp ---------------------------------EEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEE
T ss_pred ---------------------------------EEEEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCC
Confidence 5666654 55667776653 33322 222221 223568888
Q ss_pred CCCE-EEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC----CcEEEEeCCCCeEE
Q 003467 214 DGNM-LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST----GSVQFWDSRHGTLL 287 (817)
Q Consensus 214 dg~~-l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d----g~i~iwd~~~~~~~ 287 (817)
||+. +++.+.++.+.+||+.+++...... +.. ++++|+||| .|++++.+ +.|++||+.+++..
T Consensus 120 dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---------~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 120 TGEAVVFTGATEDRVALYALDGGGLRELAR---------LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp CSSCEEEEEECSSCEEEEEEETTEEEEEEE---------ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred CCCeEEEEecCCCCceEEEccCCcEEEeec---------CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 8863 3333444556699999886654443 112 789999999 56766665 67999999988754
Q ss_pred EEeecCccCeeEEEEecCCCEEEEEccCC--cEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeE-----
Q 003467 288 QAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT----- 360 (817)
Q Consensus 288 ~~~~~h~~~v~~l~~s~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~----- 360 (817)
.+..|...+..++|+|||+.|+++..++ .|++||+.+++ .. .+..|...+..++
T Consensus 189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-----------------VE-DLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-----------------EE-ECCCSCSHHHHHCCSEEE
T ss_pred -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-----------------EE-EccCCCcChhhhhhcccc
Confidence 6778888999999999999999888888 89999998776 34 5667777787777
Q ss_pred ---eecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceee
Q 003467 361 ---VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 437 (817)
Q Consensus 361 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (817)
|+ ||++ ++++++.|+.+++|++ .+... .....
T Consensus 250 ~~~~s---------pdg~------------------------~~~~~~~~g~~~l~~~--g~~~~----------~~~~~ 284 (582)
T 3o4h_A 250 WLGYL---------PDGR------------------------LAVVARREGRSAVFID--GERVE----------APQGN 284 (582)
T ss_dssp EEEEC---------TTSC------------------------EEEEEEETTEEEEEET--TEEEC----------CCSSE
T ss_pred ceeEc---------CCCc------------------------EEEEEEcCCcEEEEEE--CCeec----------cCCCc
Confidence 76 7775 9999999999999999 22111 11245
Q ss_pred ecceeecCCeEEEEEeCC---eEEEEEecc
Q 003467 438 VHNTIFSHTSLLLVQYSC---RLDILSVRL 464 (817)
Q Consensus 438 ~~~~~~s~~~~~l~~~~~---~i~i~~~~~ 464 (817)
+.+++|+ ++++++..+. .-.+|.++.
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 6678888 8877765443 355666543
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.8e-17 Score=169.75 Aligned_cols=282 Identities=11% Similarity=0.047 Sum_probs=180.8
Q ss_pred eEEEEecC--CcEEEEecC--CCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC-CCeEE
Q 003467 27 QVAAARED--GSLEIWLVS--PGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY-DLKQK 101 (817)
Q Consensus 27 ~la~~~~d--g~i~iwd~~--~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~ 101 (817)
+|.+|+.. +.|.+|++. +++. .............+..++|+|||++ |++++.+ .|.+|++. +|+..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l--~~~~~~~~~~~~~~~~~a~spdg~~------l~~~~~~-~v~~~~~~~~g~~~ 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC--KLIKRTEIPQDEPISWMTFDHERKN------IYGAAMK-KWSSFAVKSPTEIV 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE--EEEEEEECCTTCCCSEEEECTTSSE------EEEEEBT-EEEEEEEEETTEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE--EEeeEEccCCCCCCcEEEECCCCCE------EEEEccc-eEEEEEECCCCCEE
Confidence 35556542 468887654 4431 1122222111346889999999987 8888888 99999997 88765
Q ss_pred EEEeec-CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe---
Q 003467 102 IVLQSI-DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC--- 177 (817)
Q Consensus 102 ~~~~~~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 177 (817)
...... .+...+++|+|++..+ +++++.
T Consensus 75 ~~~~~~~~g~~~~~~~spdg~~l------------------------------------------------~~~~~~~~~ 106 (365)
T 1jof_A 75 HEASHPIGGHPRANDADTNTRAI------------------------------------------------FLLAAKQPP 106 (365)
T ss_dssp EEEEEECCSSGGGGCTTSCCEEE------------------------------------------------EEEECSSTT
T ss_pred EeeEeecCCCCccEEECCCCCEE------------------------------------------------EEEEecCCc
Confidence 443311 1235568888888421 233432
Q ss_pred ----------CCCcEEEEEecCCCcee-EeeccC-CccceEEEEEEccCCCEEEEeeC-CCcEEEEECC-CCceEEEEEe
Q 003467 178 ----------DDGCVRIYRITDSDELI-YHRSLP-RVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAK-LGYEIYRITV 243 (817)
Q Consensus 178 ----------~dg~i~iwd~~~~~~~~-~~~~~~-~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~-~g~~~~~~~~ 243 (817)
.+|.+.+|++.....+. ....+. .+...+.+++|+|||++|++++. ++.|++|++. +|+.......
T Consensus 107 ~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred ceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 68999999997433332 112111 24567999999999999887764 5799999998 7765322111
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eEEEEc-CCCcEEEEeCC--CCeEE---EEee---c----Ccc------CeeEEE-E
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSR--HGTLL---QAHS---F----HKG------DVNALA-A 302 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~dg~i~iwd~~--~~~~~---~~~~---~----h~~------~v~~l~-~ 302 (817)
.. ..+...+..++|+||| .+++++ .++.|.+|++. +++.. +.+. . |.. .+..++ |
T Consensus 187 ~~----~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 187 DA----PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp EC----SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred ec----CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence 10 0124568899999999 555554 47899999765 56542 2222 1 122 478999 9
Q ss_pred ecCCCEEEEEccCC------cEEEEEee-cccCCCCCCCCCccccceEEEee-ccccCCCccceeEeecccCCCCCCC--
Q 003467 303 APSHNRVFSTGSDG------QVILYKAS-CESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLP-- 372 (817)
Q Consensus 303 s~~~~~l~~~~~dg------~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~-- 372 (817)
+|||++|+++..+. .|.+|++. ++.. ..+. ....+...+..++++ |
T Consensus 263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~---------------~~~~~~~~~~~~~~~~~a~s---------p~~ 318 (365)
T 1jof_A 263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSI---------------EKQLFLSPTPTSGGHSNAVS---------PCP 318 (365)
T ss_dssp CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE---------------EEEEEEEECSSCCTTCCCEE---------ECT
T ss_pred CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE---------------EEeeeeeecCCCCcccceec---------CCC
Confidence 99999998776532 89999996 3331 0111 123345567788887 7
Q ss_pred -ccccccccCCCCCccccccccccCCCcEEEEecC-CCeEEEEeCCc
Q 003467 373 -EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANE 417 (817)
Q Consensus 373 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~~~~~~~ 417 (817)
+++ +|++++. ++.|.+|+++.
T Consensus 319 ~dg~------------------------~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 319 WSDE------------------------WMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TCTT------------------------EEEEECSSSCEEEEEEEET
T ss_pred cCCC------------------------EEEEEEcCCCeEEEEEEch
Confidence 565 7888776 48999998865
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=2.4e-16 Score=163.32 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=105.5
Q ss_pred CEEEEEe------CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC----------CCcEEEEECCC
Q 003467 171 RRVALAC------DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS----------DGYIRSWDAKL 234 (817)
Q Consensus 171 ~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~----------dg~i~vwd~~~ 234 (817)
+++.+.. .|+.|++||..+++.+ ..+..+..+ .++|+|||++|++++. ++.|.+||..+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFL---GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEE---EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEE---EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4555543 3789999998877654 455555555 8999999999999863 67899999999
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-C-CCcEEEEeCCCCeEEEE-eecCccCeeEEEEecCC-CEE
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-S-TGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSH-NRV 309 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-~-dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~-~~l 309 (817)
++.+.++...... ..+......++++||| +|+++. . ++.|.+||+.+++.+.. +... ....+.+.|++ ..+
T Consensus 91 ~~~~~~i~~~~~~--~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 91 LTFEKEISLPPKR--VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSF 166 (361)
T ss_dssp CCEEEEEEECTTB--CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEE
T ss_pred CcEEEEEEcCccc--cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeE
Confidence 9999888753110 0122346678999999 455554 2 68899999999998887 6532 22235667776 567
Q ss_pred EEEccCCcEEEEEeec
Q 003467 310 FSTGSDGQVILYKASC 325 (817)
Q Consensus 310 ~~~~~dg~i~iw~~~~ 325 (817)
++.+.||.+..|+...
T Consensus 167 ~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 167 MTICGDGGLLTINLGE 182 (361)
T ss_dssp EEEETTSSEEEEEECT
T ss_pred EEECCCCcEEEEEECC
Confidence 7888899999998864
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1e-16 Score=164.40 Aligned_cols=243 Identities=9% Similarity=0.042 Sum_probs=184.3
Q ss_pred CCceEEEEECCCCCeEEEEecC------------------------CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEE
Q 003467 13 PSPVVALATSADDSQVAAARED------------------------GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVW 68 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~ 68 (817)
-+.+.++|++|+|+++++.+.+ +.|.+||..+++ ........+-....+|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE----ILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC----EEEEECTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe----EEeccCCCccCCceEEEE
Confidence 3679999999999999888776 479999998887 344444333468899999
Q ss_pred eecCCCCCCCceEEEeeCCCeEEEEECCCCe-EEEEEe---------ecCceEEEEeeec-CCCccceeeccCccccCcc
Q 003467 69 CHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQ---------SIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGY 137 (817)
Q Consensus 69 s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---------~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~ 137 (817)
+|+|++ +++...++.|.+||..... .+..+. .+-.....++++| ++
T Consensus 99 d~~g~l------~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g----------------- 155 (329)
T 3fvz_A 99 DTDGNY------WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG----------------- 155 (329)
T ss_dssp CTTSCE------EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-----------------
T ss_pred CCCCCE------EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-----------------
Confidence 999987 8888888999999986542 455552 3334678899998 55
Q ss_pred ccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-CCCcEEEEEecCCCceeEeeccC----------CccceE
Q 003467 138 LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-DDGCVRIYRITDSDELIYHRSLP----------RVSGRV 206 (817)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----------~h~~~v 206 (817)
.++++.+ .++.|++|+.. +..+ ..+. ++-...
T Consensus 156 ---------------------------------~lyv~d~~~~~~I~~~~~~-g~~~---~~~~~~g~~~~~~~~~~~~p 198 (329)
T 3fvz_A 156 ---------------------------------AVFVSDGYCNSRIVQFSPS-GKFV---TQWGEESSGSSPRPGQFSVP 198 (329)
T ss_dssp ---------------------------------CEEEEECSSCCEEEEECTT-SCEE---EEECEECCSSSCCTTEESCE
T ss_pred ---------------------------------eEEEEeCCCCCeEEEEcCC-CCEE---EEeccCCCCCCCCCcccCCC
Confidence 3566665 68999999953 4443 2222 233458
Q ss_pred EEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEE-------cCCCcEE
Q 003467 207 LSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSA-------DSTGSVQ 277 (817)
Q Consensus 207 ~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~-------~~dg~i~ 277 (817)
..++++|+ +.++++...++.|++||..+|+.+..+... .+...+.+++++| +. +++. ..+..|+
T Consensus 199 ~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEE
T ss_pred cEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEE
Confidence 99999999 677777777899999999889988877532 3456788999999 53 2222 3345899
Q ss_pred EEeCCCCeEEEEee---cCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 278 FWDSRHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 278 iwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+||..+++.+..+. .+...+..++++|+|..+++...++.|++|++...
T Consensus 272 ~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 272 VMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99999999998873 56677999999999977777788999999998764
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=8.6e-17 Score=169.95 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=153.4
Q ss_pred EEEecCCCCCCcEEEEEEcCCCCCcEEE-----EEEeecCCCCCCCceEEEeeC-CC--eEEEEECCCCeEEEEEeecCc
Q 003467 38 EIWLVSPGTSGWHCQLTVHGDPKSRISS-----LVWCHAGKMGLPGGRLFSSSI-DG--SVSEWDLYDLKQKIVLQSIDF 109 (817)
Q Consensus 38 ~iwd~~~~~~~~~~~~~~~g~~~~~V~~-----l~~s~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~ 109 (817)
..+|..++. ....+..+ ...... .+|||||++ |+.++. ++ .|.+||+.+++.......+..
T Consensus 13 ~~~~~~~g~----~~~~lt~~-~~~~~~~~~~~~~~SpDg~~------l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~ 81 (388)
T 3pe7_A 13 TYQDASTGA----QVTRLTPP-DVTCHRNYFYQKCFTRDGSK------LLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD 81 (388)
T ss_dssp EEECTTTCC----EEEECSCT-TSCEECCCTTSCCBCTTSCE------EEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred EEecCCCCc----ceEEecCC-cccccchhhcCccCCCCCCE------EEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence 345666666 35556555 445555 889999987 888776 66 488899999998877777776
Q ss_pred eEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC
Q 003467 110 SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD 189 (817)
Q Consensus 110 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 189 (817)
.+..++|+||+ +.|+.+..++.|++||+.+
T Consensus 82 ~~~~~~~spdg--------------------------------------------------~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 82 NTFGGFLSPDD--------------------------------------------------DALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CSSSCEECTTS--------------------------------------------------SEEEEEETTTEEEEEETTT
T ss_pred CccceEEcCCC--------------------------------------------------CEEEEEeCCCeEEEEECCC
Confidence 66678899999 5888888899999999987
Q ss_pred CCceeEeeccCCccceEEEEE--EccCCCEEEEe----------------------eCCCcEEEEECCCCceEEEEEeec
Q 003467 190 SDELIYHRSLPRVSGRVLSVT--WSADGNMLYSG----------------------SSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~--~s~dg~~l~s~----------------------~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
++.. .....+.+.+.... ++|++++++.. ..+..|.+||+.+++......
T Consensus 112 g~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--- 185 (388)
T 3pe7_A 112 LEEN---VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ--- 185 (388)
T ss_dssp CCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---
T ss_pred Ccce---eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---
Confidence 6654 22333444454443 48999998743 234689999999886544332
Q ss_pred CCCCCCCceeEEEeEEec-CC-eEEEEcC------CCcEEEEeCCCCeEEEEeecCc--cCeeEEEEecCCCEEEEEcc-
Q 003467 246 GGLGSGPELCIWSLLSLR-CG-TLVSADS------TGSVQFWDSRHGTLLQAHSFHK--GDVNALAAAPSHNRVFSTGS- 314 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~-~~-~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~~~~~- 314 (817)
+...+..+.|+| || .|+.... ...|.++|...+. ...+..+. ..+..++|+|||+.|+..+.
T Consensus 186 ------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 186 ------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp ------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred ------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 455688999999 98 4655554 3378888887554 34444444 35788999999998865443
Q ss_pred CC----cEEEEEeeccc
Q 003467 315 DG----QVILYKASCES 327 (817)
Q Consensus 315 dg----~i~iw~~~~~~ 327 (817)
++ .|++||+.+++
T Consensus 259 ~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLE 275 (388)
T ss_dssp TTCCCEEEEEECTTTCC
T ss_pred CCCCcceEEEEecCCCc
Confidence 22 39999988765
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.9e-16 Score=160.94 Aligned_cols=296 Identities=9% Similarity=0.090 Sum_probs=187.3
Q ss_pred CCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc----------cCCcEEEEEeecccCCCCCCCCCccccc
Q 003467 272 STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPNDGLSSSEVIK 341 (817)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 341 (817)
.|+.|.+||..+++.+.++..+..+ .++|+||+++++++. .++.|.+||..+.+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------------- 92 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------------- 92 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--------------
Confidence 3678999999999999888876655 899999999999986 36789999987665
Q ss_pred eEEEeecccc------CCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC--CCeEEEE
Q 003467 342 KWIYVGSVRA------HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--DTKLFAY 413 (817)
Q Consensus 342 ~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~~~ 413 (817)
.+..+.. +......++++ |+++ +|+++.. ++.|.+|
T Consensus 93 ---~~~~i~~~~~~~~~g~~p~~i~~s---------pdg~------------------------~l~v~n~~~~~~v~v~ 136 (361)
T 2oiz_A 93 ---FEKEISLPPKRVQGLNYDGLFRQT---------TDGK------------------------FIVLQNASPATSIGIV 136 (361)
T ss_dssp ---EEEEEEECTTBCCBCCCGGGEEEC---------TTSS------------------------EEEEEEESSSEEEEEE
T ss_pred ---EEEEEEcCccccccCCCcceEEEC---------CCCC------------------------EEEEECCCCCCeEEEE
Confidence 3333332 23456778887 8887 7776653 6789999
Q ss_pred eCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCC
Q 003467 414 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK 493 (817)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 493 (817)
|+.+.+..... +.. ..
T Consensus 137 d~~~~~~~~~~-------------------------------------------------------------i~~---~~ 152 (361)
T 2oiz_A 137 DVAKGDYVEDV-------------------------------------------------------------TAA---AG 152 (361)
T ss_dssp ETTTTEEEEEE-------------------------------------------------------------GGG---TT
T ss_pred ECCCCcEEEEE-------------------------------------------------------------ecC---CC
Confidence 98764321100 000 00
Q ss_pred eEEEEecCCC--cEEEEEcCCceEEEEeecCCCCCceEEEee-ecCCccccceeEEEEecCCCEEEEEecCCcEEEEEcc
Q 003467 494 IICSTISNSG--MLFAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS 570 (817)
Q Consensus 494 i~~~~~s~~g--~~la~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~ 570 (817)
...+.+.|++ .+++.+.++.+.++.+.. .+........ ..+..... ...+.+++++..++..+.++.|+++|+.
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~--~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGE--DGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECT--TSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECC--CCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEec
Confidence 0112233333 223334555555555432 1111101100 01111111 1233457888888888889999999987
Q ss_pred CCce--eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-----------CCcEEEEECCCcceEEEEecCCCC
Q 003467 571 SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-----------FGDVYIFNLEIQRQHWFISRLEGA 637 (817)
Q Consensus 571 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~ 637 (817)
.... ...+...... .............++|+||++.+.++.. .+.|.+||+++++....++...
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 230 GDEVKVDGPWSLLNDE-DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp SSSCEEEEEEESCCHH-HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred CCCceecccccccCcc-ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 5432 2222210000 0000000011223789999998887654 3479999999999888886543
Q ss_pred CeEEEEecCCCCCeEEEEecCCeEEEEEcCCC--ccccchhcccCccCcchhcCCCceeEEEECCCCC
Q 003467 638 SVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK--QLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS 703 (817)
Q Consensus 638 ~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~--~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~ 703 (817)
+.+++|+| |+++|++++. +.|.+||..++ ++ ...+..+......++|+|+|.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~-----------~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKL-----------LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEE-----------EEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCccee-----------eEEeccCCCCcEEEEecCCCC
Confidence 89999999 9999998886 99999999999 54 455556667889999999863
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=2.1e-17 Score=175.19 Aligned_cols=256 Identities=6% Similarity=-0.062 Sum_probs=159.6
Q ss_pred eEEEEECCCCCeEEEEecC---CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 16 VVALATSADDSQVAAARED---GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 16 I~~la~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
+.+++|||||++||..... ..|.+||+.+++ ...+..+.......+.|+|||+. |+.++.++.|.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~spdg~~------l~~~~~~~~l~~ 106 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----AVQLTEGKGDNTFGGFISTDERA------FFYVKNELNLMK 106 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----EEECCCSSCBCTTTCEECTTSSE------EEEEETTTEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----EEEeecCCCCccccceECCCCCE------EEEEEcCCcEEE
Confidence 7788999999999887543 368888988775 23333332222334789999987 999999999999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
||+.+++.......+.. +++++..+++........ .+. ......++++.
T Consensus 107 ~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~---~~~----------------------~~~~~spdg~~ 155 (396)
T 3c5m_A 107 VDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVG---IEI----------------------LKRDWQPLTSW 155 (396)
T ss_dssp EETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEE---EEE----------------------EGGGCCCCCSH
T ss_pred EECCCCCcEEEEecccc------cCCCCCEEEeccCCcccc---ccc----------------------cccccCCCCcc
Confidence 99999887766664544 233332221110000000 000 00000111223
Q ss_pred EEEE-----eCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCC------CcEEEEECCCCceEEE
Q 003467 173 VALA-----CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSD------GYIRSWDAKLGYEIYR 240 (817)
Q Consensus 173 l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~d------g~i~vwd~~~g~~~~~ 240 (817)
++.+ ..+..|++||+.++... .+..+...+..++|+| +++.|+..+.+ ..|.+||+..++. ..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~ 230 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELE----VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RK 230 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EE
T ss_pred eeeeeeccCCCcceEEEEECCCCcEE----eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eE
Confidence 3322 34568999999765542 2234667899999999 88878776653 3688899865543 22
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC-----CcEEEEeCCCCeEEEEeecCccCeeEEEEec-CCCEEEEEc
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTG 313 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~~~~ 313 (817)
+.. ......+..+.|+||| .|+.++.+ +.|.+||+.+++....... . ... ++|+| ||+.+++++
T Consensus 231 l~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 231 IKE------HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp SSC------CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEE
T ss_pred eec------cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEec
Confidence 221 0124468889999999 46655433 3499999998865443222 1 123 89999 999888754
Q ss_pred ----------------cCCcEEEEEeeccc
Q 003467 314 ----------------SDGQVILYKASCES 327 (817)
Q Consensus 314 ----------------~dg~i~iw~~~~~~ 327 (817)
.++.|.+|++.++.
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTB
T ss_pred CCcceeeccccccccCCCCcEEEEecccCc
Confidence 34689999987665
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=1.2e-14 Score=157.88 Aligned_cols=320 Identities=12% Similarity=0.100 Sum_probs=216.4
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCC--CCeEEEE
Q 003467 213 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQA 289 (817)
Q Consensus 213 ~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~--~~~~~~~ 289 (817)
|.+.++++...++.|.++|..+++.+.++.. ...+..+.|+||| ++++++.++.|.+||+. +++.+.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 4455677777889999999999999998873 2345689999999 67778889999999995 7888888
Q ss_pred eecCccCeeEEEEe----cCCCEEEEEcc-CCcEEEEEeecccCCCCCCCCCccccceEEEeecccc----------CCC
Q 003467 290 HSFHKGDVNALAAA----PSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA----------HTH 354 (817)
Q Consensus 290 ~~~h~~~v~~l~~s----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~ 354 (817)
+... .....++|+ |||++++++.. +++|.++|..+.+ .+..+.. |..
T Consensus 236 i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-----------------~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 236 IKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-----------------PKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp EECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-----------------EEEEEECCEECTTTCCEESC
T ss_pred EecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-----------------EEEEEeccccccccccccCC
Confidence 8763 346789999 69999998766 6999999977655 3333221 111
Q ss_pred -ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCC
Q 003467 355 -DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 433 (817)
Q Consensus 355 -~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~ 433 (817)
.+..+..+ +++. ..+++...+|.|.++|.....
T Consensus 298 ~rva~i~~s---------~~~~-----------------------~~vv~~~~~g~v~~vd~~~~~-------------- 331 (567)
T 1qks_A 298 PRVAAILAS---------HYRP-----------------------EFIVNVKETGKILLVDYTDLN-------------- 331 (567)
T ss_dssp CCEEEEEEC---------SSSS-----------------------EEEEEETTTTEEEEEETTCSS--------------
T ss_pred CceEEEEEc---------CCCC-----------------------EEEEEecCCCeEEEEecCCCc--------------
Confidence 34444443 3221 366666777888887765421
Q ss_pred ceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEE--cC
Q 003467 434 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DH 511 (817)
Q Consensus 434 ~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~ 511 (817)
.+.+.. + ..........|+|+|+++.++ .+
T Consensus 332 ----------------------~~~v~~------------------------i--~~~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 332 ----------------------NLKTTE------------------------I--SAERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp ----------------------EEEEEE------------------------E--ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred ----------------------cceeee------------------------e--eccccccCceECCCCCEEEEEeCCC
Confidence 001111 1 112456678899999987774 45
Q ss_pred CceEEEEeecCCCCCceEEEee-ecCCcccc-ceeEEEEecCCCEEEEEe--cCCcEEEEEccC-------Cceeeeecc
Q 003467 512 VKPSLFELKKGKVGQGEWIINK-RQLPRKLQ-FAHSMIFSYDSSQLIIAG--HDRRIYVVDVSS-------SELLHTFTP 580 (817)
Q Consensus 512 ~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~fspd~~~l~~~~--~dg~i~v~d~~~-------~~~~~~~~~ 580 (817)
++|.++++.. +..+..+.. .. ..|.. .+. .++|++..+.+.+ .+++|.++|..+ .+.++++..
T Consensus 364 n~V~ViD~~t---~kl~~~i~vgg~-~Phpg~g~~--~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 364 NKLVVIDTKE---GKLVAIEDTGGQ-TPHPGRGAN--FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp TEEEEEETTT---TEEEEEEECSSS-SBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred CeEEEEECCC---CcEEEEEeccCc-CCCCcccee--eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec
Confidence 8889988764 322222221 11 12221 222 2688866555443 368999999987 677788775
Q ss_pred CcccccccCCCCCCceeEEEEccCCCEEEEEeC-------CCcEEEEECCCc-----ceE-EEEecC-------CCCCeE
Q 003467 581 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-------FGDVYIFNLEIQ-----RQH-WFISRL-------EGASVT 640 (817)
Q Consensus 581 ~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-------dg~i~vwd~~~~-----~~~-~~~~~~-------~~~~i~ 640 (817)
....-..+.++||+++|.+... ...|.|+|+++. ... ..++.. .+..+.
T Consensus 438 -----------~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 438 -----------LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp -----------SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred -----------CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 2333355789999999998763 458999999877 221 234321 135789
Q ss_pred EEEecCCCCCeEEEEe-----cCCeEEEEEcCCCcc
Q 003467 641 AAGFPPQNNNVLIITT-----SSNQVYVFDVEAKQL 671 (817)
Q Consensus 641 ~l~~sp~d~~~l~~~~-----~d~~i~vwd~~~~~~ 671 (817)
.+.|+| +|+.|.++. .++.|.|+|.+++++
T Consensus 507 ~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 507 QGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred eeeECC-CCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 999999 998887763 378999999999886
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.3e-16 Score=169.20 Aligned_cols=314 Identities=11% Similarity=0.044 Sum_probs=192.0
Q ss_pred EEecCCCceeEeeccCCccc-----eEEEEEEccCCCEEEEeeCC---CcEEEEECCCCceEEEEEeecCCCCCCCceeE
Q 003467 185 YRITDSDELIYHRSLPRVSG-----RVLSVTWSADGNMLYSGSSD---GYIRSWDAKLGYEIYRITVGLGGLGSGPELCI 256 (817)
Q Consensus 185 wd~~~~~~~~~~~~~~~h~~-----~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v 256 (817)
.|..++..+ ..+..+.. .+.+++|+|||++|+..... ..|.+||+.+++... +.. ......
T Consensus 15 ~d~~~g~~~---~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~-------~~~~~~ 83 (396)
T 3c5m_A 15 VDSDTQVKV---TRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTE-------GKGDNT 83 (396)
T ss_dssp ECTTTCCEE---EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCC-------SSCBCT
T ss_pred ecCCCCcce---EEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eec-------CCCCcc
Confidence 355555544 34444332 36778999999998877553 478899998876433 221 122222
Q ss_pred EEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCC
Q 003467 257 WSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS 335 (817)
Q Consensus 257 ~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 335 (817)
..+.|+||| .|+.++.++.|.+||+.+++.......+.. |+++|+.|+....+....+|..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~------------ 145 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL------------ 145 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE------------
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc------------
Confidence 337789999 677888888999999998876655554433 6777777776665544443321
Q ss_pred CccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe-----cCCCeE
Q 003467 336 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-----GDDTKL 410 (817)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~dg~i 410 (817)
...++ |+++ .++.. ..+..|
T Consensus 146 ----------------------~~~~s---------pdg~------------------------~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 146 ----------------------KRDWQ---------PLTS------------------------WEKFAEFYHTNPTCRL 170 (396)
T ss_dssp ----------------------GGGCC---------CCCS------------------------HHHHHHHHHTCCCEEE
T ss_pred ----------------------ccccC---------CCCc------------------------ceeeeeeccCCCcceE
Confidence 11122 4543 22222 345567
Q ss_pred EEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecC
Q 003467 411 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA 490 (817)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 490 (817)
++||+.+... ..+. ..
T Consensus 171 ~~~d~~~g~~---------------------------------------------------------------~~~~-~~ 186 (396)
T 3c5m_A 171 IKVDIETGEL---------------------------------------------------------------EVIH-QD 186 (396)
T ss_dssp EEEETTTCCE---------------------------------------------------------------EEEE-EE
T ss_pred EEEECCCCcE---------------------------------------------------------------Eeec-cC
Confidence 7777654220 0000 11
Q ss_pred CCCeEEEEecC-CCcEEEEEcC-------CceEEEEeecCCCCCceEEEeeecCCcc--ccceeEEEEecCCCEEEEEec
Q 003467 491 SRKIICSTISN-SGMLFAYSDH-------VKPSLFELKKGKVGQGEWIINKRQLPRK--LQFAHSMIFSYDSSQLIIAGH 560 (817)
Q Consensus 491 ~~~i~~~~~s~-~g~~la~~~~-------~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~fspd~~~l~~~~~ 560 (817)
...+..++|+| +|+.|++..+ ..+.+|++.. + .. ..+..+ ...+..++|+|||++|+.++.
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~---~-~~-----~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG---S-NV-----RKIKEHAEGESCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS---C-CC-----EESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC---C-ce-----eEeeccCCCccccceEECCCCCEEEEEec
Confidence 24567788999 7887666432 2455555432 2 11 112222 225778899999998888765
Q ss_pred C-----CcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEcc-CCCEEEEEe----------------CCCcEE
Q 003467 561 D-----RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVN----------------CFGDVY 618 (817)
Q Consensus 561 d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~----------------~dg~i~ 618 (817)
+ +.|++||+.+++....... .. .. +.|+| ||++|++++ .++.|+
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~------------~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 258 FKGQTDRVIYKANPETLENEEVMVM------------PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp ETTTCCEEEEEECTTTCCEEEEEEC------------CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred CCCCccceEEEEECCCCCeEEeeeC------------CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 4 4499999988765433221 11 23 89999 999988765 347899
Q ss_pred EEECCCcceEEEEecCCCC----------CeEEEEecCCCCCeEEEEec-CC--eEEEEEcCCCcc
Q 003467 619 IFNLEIQRQHWFISRLEGA----------SVTAAGFPPQNNNVLIITTS-SN--QVYVFDVEAKQL 671 (817)
Q Consensus 619 vwd~~~~~~~~~~~~~~~~----------~i~~l~~sp~d~~~l~~~~~-d~--~i~vwd~~~~~~ 671 (817)
+||+++++... +...... .+..++|+| |++.|+.++. ++ .|+++++.+++.
T Consensus 324 ~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 324 VLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred EEecccCceEE-ccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEccccc
Confidence 99999887543 3222211 256789999 9988887765 34 466666777664
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=2.4e-16 Score=179.32 Aligned_cols=264 Identities=15% Similarity=0.065 Sum_probs=182.9
Q ss_pred eccCCCceEEEEECCCCCeEEEE--ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEE---------EEEEe--ecCCCC
Q 003467 9 IDWKPSPVVALATSADDSQVAAA--REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRIS---------SLVWC--HAGKMG 75 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~---------~l~~s--~~~~~~ 75 (817)
+..|...|..+++++++.+++.. ..++...||....+. ....+..+ ...+. ..+|+ |||+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~l~~~-~~~~~~~~~~~~~~~~~~~~SPDg~~- 92 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG----AEESALPA-PWNVRNRVFEYSGFPWAGVPRPAGGP- 92 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS----CEEESSCT-TCCBCCCGGGTCCCCEEEECCSSSSC-
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC----CcceeCCC-CccccccccccCCccceeeeecCCCe-
Confidence 45688899999999987777777 457889999964433 14455555 34555 56676 89863
Q ss_pred CCCceEEEeeCCCeEEEEECC--C-CeEEEEEee-----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 76 LPGGRLFSSSIDGSVSEWDLY--D-LKQKIVLQS-----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~--~-~~~~~~~~~-----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
..+++...+..|.+|++. + ++ ...+.. |...+..++|+|||.
T Consensus 93 ---~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-------------------------- 142 (662)
T 3azo_A 93 ---LLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-------------------------- 142 (662)
T ss_dssp ---EEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT--------------------------
T ss_pred ---EEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC--------------------------
Confidence 013333335667777766 3 44 455555 678899999999994
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEeCC----------CcEEEEEecCC-----CceeEeeccC-CccceEEEEEE
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALACDD----------GCVRIYRITDS-----DELIYHRSLP-RVSGRVLSVTW 211 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~-----~~~~~~~~~~-~h~~~v~~v~~ 211 (817)
.|+.++.+ ..|++||+.+. ... +.+. .+...+..++|
T Consensus 143 ------------------------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~ 195 (662)
T 3azo_A 143 ------------------------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRL 195 (662)
T ss_dssp ------------------------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEE
T ss_pred ------------------------EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---eEEEecCCCcccCceE
Confidence 67766665 58999999752 333 4455 56678899999
Q ss_pred ccCCCEEEEeeCC--------CcEEEEECC-CCc--eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC--cEE
Q 003467 212 SADGNMLYSGSSD--------GYIRSWDAK-LGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG--SVQ 277 (817)
Q Consensus 212 s~dg~~l~s~~~d--------g~i~vwd~~-~g~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg--~i~ 277 (817)
||||++|+.++.+ ..|++||+. +|+ ....+.. .+...+..+.|+||| .+++++.++ .|.
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-------GPEEAIAQAEWAPDGSLIVATDRTGWWNLH 268 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-------ETTBCEEEEEECTTSCEEEEECTTSSCEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-------CCCceEcceEECCCCeEEEEECCCCCeEEE
Confidence 9999999988755 379999998 562 3344432 356788999999999 466677777 577
Q ss_pred EEeCCCCeEEEEeecCccC--------eeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeecc
Q 003467 278 FWDSRHGTLLQAHSFHKGD--------VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV 349 (817)
Q Consensus 278 iwd~~~~~~~~~~~~h~~~--------v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (817)
+||..+++.......+... +..++|+|+++.++++.. +.+++|.++.... .+..+
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~----------------~~~~l 331 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG----------------ELVDA 331 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT----------------EEEEC
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC----------------cEEEe
Confidence 7777677655444433322 567899999999999988 9999996653210 23455
Q ss_pred ccCCCcccee
Q 003467 350 RAHTHDVRAL 359 (817)
Q Consensus 350 ~~h~~~v~~l 359 (817)
..|...+..+
T Consensus 332 ~~~~~~~~~~ 341 (662)
T 3azo_A 332 AGPWTEWAAT 341 (662)
T ss_dssp CSSCCEEEEE
T ss_pred cCCCCeEEEE
Confidence 6666666655
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=5.5e-16 Score=176.29 Aligned_cols=202 Identities=8% Similarity=-0.027 Sum_probs=140.1
Q ss_pred EcCCCCCcEEEEEEeecCCCCCCCceEEEe--eCCCeEEEEECCCCeEEEEEeecCceEE---------EEeee--cCCC
Q 003467 55 VHGDPKSRISSLVWCHAGKMGLPGGRLFSS--SIDGSVSEWDLYDLKQKIVLQSIDFSIW---------QMAVA--PSNS 121 (817)
Q Consensus 55 ~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~i~---------~~~~s--~~~~ 121 (817)
+.+| ...|..++|++++-+ +++. +.++...+|....+.....+..+...+. ..+|+ ||+
T Consensus 19 ~~~~-~~~~~~~~~s~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg- 90 (662)
T 3azo_A 19 VASR-SGRPACVGAVGDEVW------WVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG- 90 (662)
T ss_dssp HHHT-CSCCEEEEEETTEEE------EEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS-
T ss_pred Hhhc-CCccceeEEcCCeEE------EEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCC-
Confidence 3344 678999999977544 5555 5578999999655555666666665555 45454 777
Q ss_pred ccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE-EEEEeC-CCcEEEEEec--CCCceeEee
Q 003467 122 SLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR-VALACD-DGCVRIYRIT--DSDELIYHR 197 (817)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~-dg~i~iwd~~--~~~~~~~~~ 197 (817)
+. |+.+.. +..|+++++. +.... +
T Consensus 91 -------------------------------------------------~~~la~~~~~~~~l~~~~~~~~g~~~~---~ 118 (662)
T 3azo_A 91 -------------------------------------------------GPLLVFTHFGDQRLYAFEPDAPGGAVP---R 118 (662)
T ss_dssp -------------------------------------------------SCEEEEEBTTTCCEEEECTTSTTCCCC---E
T ss_pred -------------------------------------------------CeEEEEEECCCCeEEEEcCCCCCCCCC---E
Confidence 35 555443 5566666654 20333 4
Q ss_pred ccCC-----ccceEEEEEEccCCCEEEEeeCC----------CcEEEEECCC------CceEEEEEeecCCCCCCCceeE
Q 003467 198 SLPR-----VSGRVLSVTWSADGNMLYSGSSD----------GYIRSWDAKL------GYEIYRITVGLGGLGSGPELCI 256 (817)
Q Consensus 198 ~~~~-----h~~~v~~v~~s~dg~~l~s~~~d----------g~i~vwd~~~------g~~~~~~~~~~~~~~~~~~~~v 256 (817)
.+.. |...+.+++|+|||+.|++++.+ ..|++||+.+ ++. ..+.. .+...+
T Consensus 119 ~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~-------~~~~~~ 190 (662)
T 3azo_A 119 PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD-------DAHRFV 190 (662)
T ss_dssp ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC-------SCSSEE
T ss_pred eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe-------cCCCcc
Confidence 4444 67889999999999999999877 5899999987 543 22220 134577
Q ss_pred EEeEEecCC-eEEEEcCC--------CcEEEEeCC-CC---eEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 257 WSLLSLRCG-TLVSADST--------GSVQFWDSR-HG---TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 257 ~~v~~~~~~-~l~s~~~d--------g~i~iwd~~-~~---~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
..++|+||| .|+.++.+ ..|++||+. ++ +.......|...+..++|+|||+.++++..++...+|.+
T Consensus 191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEE
T ss_pred cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEE
Confidence 889999999 56666544 369999999 57 444444556788999999999998888888885555544
Q ss_pred e
Q 003467 324 S 324 (817)
Q Consensus 324 ~ 324 (817)
+
T Consensus 271 ~ 271 (662)
T 3azo_A 271 D 271 (662)
T ss_dssp C
T ss_pred E
Confidence 3
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=6.9e-14 Score=151.99 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=165.9
Q ss_pred CCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECC--CCeE
Q 003467 23 ADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLY--DLKQ 100 (817)
Q Consensus 23 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~ 100 (817)
|.+.++++.+.++.|.++|..+++ ...++..+ ..+..++|+|||++ |++++.|+.|.+||+. +++.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~----v~~~i~~g--~~p~~v~~SpDGr~------lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE----IKTVLDTG--YAVHISRLSASGRY------LFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC----EEEEEECS--SCEEEEEECTTSCE------EEEEETTSEEEEEETTSSSCCE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe----EEEEEeCC--CCccceEECCCCCE------EEEEcCCCeEEEEECCCCCCcE
Confidence 445566777888999999999987 45666643 46779999999998 9999999999999996 8888
Q ss_pred EEEEeecCceEEEEeee----cCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEE
Q 003467 101 KIVLQSIDFSIWQMAVA----PSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALA 176 (817)
Q Consensus 101 ~~~~~~~~~~i~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (817)
+.++.. +.....++|+ |||. +++++
T Consensus 233 v~~i~~-G~~P~~ia~s~~~~pDGk--------------------------------------------------~l~v~ 261 (567)
T 1qks_A 233 VAEIKI-GSEARSIETSKMEGWEDK--------------------------------------------------YAIAG 261 (567)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTT--------------------------------------------------EEEEE
T ss_pred eEEEec-CCCCceeEEccccCCCCC--------------------------------------------------EEEEE
Confidence 888775 4456799999 6884 55544
Q ss_pred -eCCCcEEEEEecCCCceeEeeccC-------Cccc-eEEEEEEccCCCEE-EEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 177 -CDDGCVRIYRITDSDELIYHRSLP-------RVSG-RVLSVTWSADGNML-YSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 177 -~~dg~i~iwd~~~~~~~~~~~~~~-------~h~~-~v~~v~~s~dg~~l-~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
..++.|.|+|..+.+.+....... .|.. ++..+..++++..+ +....+|.|.++|..+.+.+.....
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--- 338 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--- 338 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE---
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee---
Confidence 456999999988766654322211 1222 78889999987654 4455679999999987654333222
Q ss_pred CCCCCCceeEEEeEEecCC-e-EEEEcCCCcEEEEeCCCCeEEEEeec-----CccCeeEEEEecCCCEEEEEc--cCCc
Q 003467 247 GLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSF-----HKGDVNALAAAPSHNRVFSTG--SDGQ 317 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~s~~~~~l~~~~--~dg~ 317 (817)
........+.|+|+| + +++...++.|.++|..+++.+..+.. |.+.-.. -++|++..+++.+ .++.
T Consensus 339 ----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 339 ----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp ----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSE
T ss_pred ----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCe
Confidence 133456678999999 3 45566788999999999998877754 2221112 2578765555443 4689
Q ss_pred EEEEEeecc
Q 003467 318 VILYKASCE 326 (817)
Q Consensus 318 i~iw~~~~~ 326 (817)
|.+++....
T Consensus 414 Vsvid~~~~ 422 (567)
T 1qks_A 414 VALIGTDPE 422 (567)
T ss_dssp EEEEECCTT
T ss_pred EEEecCCCC
Confidence 999998764
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=6e-15 Score=148.22 Aligned_cols=243 Identities=11% Similarity=0.101 Sum_probs=175.3
Q ss_pred cCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-----CCCCcEEEEEEe-ecCCCCCCCceEEEe
Q 003467 11 WKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-----DPKSRISSLVWC-HAGKMGLPGGRLFSS 84 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-----~~~~~V~~l~~s-~~~~~~~~~~~l~s~ 84 (817)
++-....+++++|+|+++++...++.|.+||.. ++ ....+.. .+...+.+++++ +++.+ +++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~----~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l------~v~~ 95 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR----FKFQFGECGKRDSQLLYPNRVAVVRNSGDI------IVTE 95 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC----EEEEECCBSSSTTCBSSEEEEEEETTTTEE------EEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc----EEEEecccCCCcccccCceEEEEEcCCCeE------EEEc
Confidence 345679999999999988888888999999987 44 2334432 123578999995 66653 4444
Q ss_pred eC-CCeEEEEECCCCeEEEEEee-cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 85 SI-DGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 85 ~~-d~~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
.. ++.|.+|| .+++.+..+.. +...+..+++++++
T Consensus 96 ~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g------------------------------------------ 132 (286)
T 1q7f_A 96 RSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG------------------------------------------ 132 (286)
T ss_dssp CGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS------------------------------------------
T ss_pred CCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC------------------------------------------
Confidence 33 78999999 66777766643 34568899999988
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
+++++...++.|++||.. +..+.. .....+...+.+++++++|+++++...++.|++||. +++.+..+.
T Consensus 133 --------~l~v~~~~~~~i~~~~~~-g~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 201 (286)
T 1q7f_A 133 --------RIIVVECKVMRVIIFDQN-GNVLHK-FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIG 201 (286)
T ss_dssp --------CEEEEETTTTEEEEECTT-SCEEEE-EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEES
T ss_pred --------CEEEEECCCCEEEEEcCC-CCEEEE-eCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEc
Confidence 366666778899999964 433321 111244557899999999998888788899999997 566665553
Q ss_pred eecCCCCCCCceeEEEeEEecCCe-EEEEcCCC-cEEEEeCCCCeEEEEeecCcc--CeeEEEEecCCCEEEEEccCCcE
Q 003467 243 VGLGGLGSGPELCIWSLLSLRCGT-LVSADSTG-SVQFWDSRHGTLLQAHSFHKG--DVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 243 ~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~dg-~i~iwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
. .++...+..++++++|. +++...++ .|.+||.. ++.+..+..+.. .+.+++++|+|+.+++ +.|+.|
T Consensus 202 ~------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 202 G------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRL 273 (286)
T ss_dssp C------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred c------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeE
Confidence 1 12235688999999995 45555564 89999964 777777765543 4779999999976665 579999
Q ss_pred EEEEeecc
Q 003467 319 ILYKASCE 326 (817)
Q Consensus 319 ~iw~~~~~ 326 (817)
++|++...
T Consensus 274 ~v~~~~~~ 281 (286)
T 1q7f_A 274 YIYRYVQL 281 (286)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99997653
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=4.1e-15 Score=154.25 Aligned_cols=265 Identities=11% Similarity=0.077 Sum_probs=164.5
Q ss_pred CceEEEEECCCCCeEEEEe---------cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe
Q 003467 14 SPVVALATSADDSQVAAAR---------EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS 84 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~---------~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~ 84 (817)
..+..+++ ||++||... .++.|.+||+.+++. ..+ ..+.+++|||||++ |+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l-----~~~~~~~~SpDg~~------la~~ 76 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-----RFI-----ENATMPRISPDGKK------IAFM 76 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-----EEE-----ESCEEEEECTTSSE------EEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-----EEc-----ccCCCeEECCCCCE------EEEE
Confidence 45778888 999998753 256799999988762 233 35789999999987 8877
Q ss_pred eCC---C--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 85 SID---G--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 85 ~~d---~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
+.+ + .|.+||+.+++.......+ . +..++|+|++..+++......... . ........+.
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~-------~-~~~~~~~~~~------ 140 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDE-------D-FIFEDDVPAW------ 140 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-----------------CCCC------
T ss_pred EeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcC-------C-cEEEccccee------
Confidence 643 3 4888899988876655543 4 999999999976655433210000 0 0000000000
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-------cEEEEEC
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-------YIRSWDA 232 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-------~i~vwd~ 232 (817)
.++..+ .......|++||+.+++.+.. +.. . .+..++|+||| +++++..++ ...+|.+
T Consensus 141 --------~~g~~~-~~~~~~~l~~~d~~~~~~~~~---l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 141 --------FDDLGF-FDGEKTTFWIFDTESEEVIEE---FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp ------------------CEEEEEEEETTTTEEEEE---EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE
T ss_pred --------ecCccc-ccCccceEEEEECCCCeEEee---ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEe
Confidence 000000 011235789999876554222 222 2 67889999999 777776542 3455544
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC--------CcEEEEeCCCCeEEEEeecCccCeeE-EEE
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST--------GSVQFWDSRHGTLLQAHSFHKGDVNA-LAA 302 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~-l~~ 302 (817)
.+++ ...+.. + ..+..+ +||| .|+.++.+ ..|.+|| +++.......+...+.. ++|
T Consensus 206 d~~~-~~~l~~--------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~ 271 (347)
T 2gop_A 206 EDGK-EEKMFE--------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIK 271 (347)
T ss_dssp ETTE-EEEEEE--------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEE
T ss_pred CCCc-eEEecc--------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEE
Confidence 4444 444442 2 344444 8999 56655543 3688888 56655555566778886 999
Q ss_pred ecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 303 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 303 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
+ |+ .+++++.++.+++| +.++. . ..+..+...|.+++++
T Consensus 272 s-dg-~~~~~~~~~~~~l~-~~~g~-----------------~-~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 272 D-GK-VYFTLFEEGSVNLY-IWDGE-----------------I-KPIAKGRHWIMGFDVD 310 (347)
T ss_dssp T-TE-EEEEEEETTEEEEE-EESSS-----------------E-EEEECSSSEEEEEEES
T ss_pred c-Cc-EEEEEecCCcEEEE-EcCCc-----------------e-EEEecCCCeEEeeeee
Confidence 9 88 88899999999999 87433 2 2233346677888875
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.69 E-value=5.1e-11 Score=137.78 Aligned_cols=528 Identities=10% Similarity=0.048 Sum_probs=317.1
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC-------CCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG-------DPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g-------~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
..|++|+-.++|. |-.|..+| +..||-.. ...+.. -....|.+|...++|. |-.++.
T Consensus 43 n~v~~I~qD~~G~-lWigT~~G-L~ryDG~~-------f~~~~~~~~~~~~l~~n~I~~i~~d~~g~-------lWigT~ 106 (795)
T 4a2l_A 43 STVFSIDQDKRGN-MWFATYDG-VNKYDGYA-------FTVYQHNEDDPNSIANDISRIVKTDSQGR-------VWIGTR 106 (795)
T ss_dssp SCEEEEEECTTSC-EEEEETTE-EEEECSSC-------EEEECCCTTCTTSCSCSCEEEEEECTTSC-------EEEEES
T ss_pred ceeEEEEEcCCCC-EEEeecCc-CcccCCCc-------eEEEeCCCCCCCcccccceeEEEECCCCC-------EEEEeC
Confidence 5799999999985 44666776 66676432 122221 1246799999888876 556666
Q ss_pred CCeEEEEECCCCeEEEEEeec-Cce---EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSI-DFS---IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~-~~~---i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+| +..||..+++... +... ... |+++...+++
T Consensus 107 ~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g------------------------------------------ 142 (795)
T 4a2l_A 107 DG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPE------------------------------------------ 142 (795)
T ss_dssp SC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETT------------------------------------------
T ss_pred Cc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCC------------------------------------------
Confidence 55 8999988766432 2211 111 7788877777
Q ss_pred cccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC-Cc-cce-EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEE
Q 003467 163 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RV-SGR-VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h-~~~-v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
.+.+++. +.|..|+..++ .+ ..+. .+ ... |.++...+++.+.+ ++.++-|..||..+++...
T Consensus 143 ---------~lwi~t~-~gl~~~~~~~~-~~---~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~ 207 (795)
T 4a2l_A 143 ---------QLLISTP-EGLIMFDIKES-KF---IDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK 207 (795)
T ss_dssp ---------EEEEEET-TEEEEEETTTT-EE---ECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE
T ss_pred ---------CEEEEEC-CceEEEECCCC-EE---EeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE
Confidence 6666776 45888887543 22 1111 11 123 88898888876554 5665568999987776433
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec-------CccCeeEEEEecCCCEEEEE
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-------HKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~s~~~~~l~~~ 312 (817)
.... .....|.++...+++.+..++.++-|..||..+++....... ....|.++...++|... .|
T Consensus 208 ~~~~-------~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-ig 279 (795)
T 4a2l_A 208 VIPI-------LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IG 279 (795)
T ss_dssp CC-----------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EE
T ss_pred ecCC-------CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EE
Confidence 2111 134568888888889777777655599999987765433221 13569999999888744 45
Q ss_pred ccCCcEEEEEeecccCCCCCCCCCccccceEEEeec-----cccCCCccceeEeecccCCCCCCCccccccccCCCCCcc
Q 003467 313 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS-----VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID 387 (817)
Q Consensus 313 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
+.+ -|.+|+..+... ..... .......|.++... ++|
T Consensus 280 t~~-Gl~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~i~~i~~D---------~~g------------- 321 (795)
T 4a2l_A 280 TFN-DLNIYHEGTDSF---------------ASYSSNPVENGSLSQRSVRSIFMD---------SQG------------- 321 (795)
T ss_dssp ESS-CEEEEETTTTEE---------------EEECCCTTSTTSCSSSCEEEEEEC---------TTS-------------
T ss_pred eCC-hhheEcCCCCeE---------------EEEecCCCCCCCCCCCcEEEEEEe---------CCc-------------
Confidence 455 588888665431 11111 11233557777764 444
Q ss_pred ccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEE-EeCCeEEEEEecccC
Q 003467 388 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV-QYSCRLDILSVRLEN 466 (817)
Q Consensus 388 ~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~~i~i~~~~~~~ 466 (817)
.|..|+.++-|..++...... ........+.......+.++..++++.+-+ +..+.+..++.....
T Consensus 322 ------------~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 322 ------------GMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp ------------CEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC
T ss_pred ------------CEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc
Confidence 577788888888888654321 111100111122234566777777765544 434467666544322
Q ss_pred CcccCCCCCCCCccceeeeeee--------cCCCCeEEEEecCCCc-EEEEEcCCceEEEEeecCCCCCceEEEeeecCC
Q 003467 467 NVESRSSSGGHASTSLLVQVKS--------KASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP 537 (817)
Q Consensus 467 ~~~~~~~~~g~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~-~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 537 (817)
+..... -....|.+++..++|+ +.+...++.+..|+... .....+....-.
T Consensus 389 ----------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~----~~~~~~~~~~~~ 448 (795)
T 4a2l_A 389 ----------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS----GQVENFNQRNSQ 448 (795)
T ss_dssp ----------------EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT----CCEEEECTTTSC
T ss_pred ----------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC----CcEEEeecCCCC
Confidence 111110 1135688999999998 55545556777776543 122112110000
Q ss_pred ccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcE
Q 003467 538 RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 617 (817)
Q Consensus 538 ~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 617 (817)
.....|.++...++|...+.. .+| +.+||..+++....... . .........|.++...++|++.+... . -|
T Consensus 449 l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl 519 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKE-K----DGTPVVSKQITTLFRDSHKRLWIGGE-E-GL 519 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBC-T----TCCBCCCCCEEEEEECTTCCEEEEES-S-CE
T ss_pred cCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEcccc-c----cccccCCceEEEEEECCCCCEEEEeC-C-ce
Confidence 123468889888888766544 454 99999877654332111 0 00001346799999999998766554 4 48
Q ss_pred EEEECCCcceEEEEe------cCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcC-C
Q 003467 618 YIFNLEIQRQHWFIS------RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEF-P 690 (817)
Q Consensus 618 ~vwd~~~~~~~~~~~------~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~-~ 690 (817)
..||..+.+. .+. ......|.++...+ ++.+ .+++.. .|..||..+++...+... .+. .
T Consensus 520 ~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~l-WigT~~-Gl~~~d~~~~~~~~~~~~---------~gl~~ 585 (795)
T 4a2l_A 520 SVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGII-WVGTRE-GFYCFNEKDKQIKRYNTT---------NGLPN 585 (795)
T ss_dssp EEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCE-EEEESS-CEEEEETTTTEEEEECGG---------GTCSC
T ss_pred EEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCE-EEEeCC-CceeECCCCCcEEEeCCC---------CCCch
Confidence 9999887765 222 12225788999888 7764 445555 588999988765332211 111 2
Q ss_pred CceeEEEECCCCCCCEEEEEcCceEEEEEcC
Q 003467 691 GEVIGLSFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 691 ~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
..|.++..+++|+ +|+.+...++.+|..
T Consensus 586 ~~i~~i~~d~~g~---lWi~t~~Gl~~~~~~ 613 (795)
T 4a2l_A 586 NVVYGILEDSFGR---LWLSTNRGISCFNPE 613 (795)
T ss_dssp SCEEEEEECTTSC---EEEEETTEEEEEETT
T ss_pred hheEEEEECCCCC---EEEEcCCceEEEcCC
Confidence 4688999988765 999999999999864
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.69 E-value=4.2e-11 Score=138.47 Aligned_cols=544 Identities=9% Similarity=0.009 Sum_probs=319.4
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCC---cEEEEEEeecCCCCCCCceEEEeeCCCeE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKS---RISSLVWCHAGKMGLPGGRLFSSSIDGSV 90 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~---~V~~l~~s~~~~~~~~~~~l~s~~~d~~i 90 (817)
..|++|...++|.+. +|..+| +..||..+++ ...+...... .|.++...++|. |..++. +-|
T Consensus 88 n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~-----f~~~~~~~~~~~~~i~~i~~d~~g~-------lwi~t~-~gl 152 (795)
T 4a2l_A 88 DISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDI-----FQNFFYEKNGKHLQVNGIEEISPEQ-------LLISTP-EGL 152 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSC-EEEEETTTTE-----EEEECCEETTEECCCCEEEEEETTE-------EEEEET-TEE
T ss_pred cceeEEEECCCCCEE-EEeCCc-hheeCCCCCe-----EEeccccccCCCceEEEEEECCCCC-------EEEEEC-Cce
Confidence 579999999999755 455555 8999987654 2233221111 188888888876 444444 458
Q ss_pred EEEECCCCeEEEEEeec-Cce-EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 91 SEWDLYDLKQKIVLQSI-DFS-IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~-~~~-i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
..||..+++........ ... |.++...+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g------------------------------------------------ 184 (795)
T 4a2l_A 153 IMFDIKESKFIDDSFSTAMHKTIASTLYRQGD------------------------------------------------ 184 (795)
T ss_dssp EEEETTTTEEECSSSCHHHHTCCEEEEEEETT------------------------------------------------
T ss_pred EEEECCCCEEEeccCCCCCCcceEEEEECCCC------------------------------------------------
Confidence 99998876533211111 122 7777777776
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+.+++.++-|..|+..++... ... .......|.++...++|.+.+ |+.++-|.+||..+++.. .+.......
T Consensus 185 ---~lwigt~~~Gl~~~~~~~~~~~-~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~ 257 (795)
T 4a2l_A 185 ---QIYIGTSTDGLYTYSITQKTFE-KVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNP 257 (795)
T ss_dssp ---EEEEEESSSCEEEEETTTCCEE-ECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCT
T ss_pred ---CEEEEECCCCEEEEeCCCCeEE-Eec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCc
Confidence 6777777656888987644322 111 112345789998888876554 444445889998766543 332110000
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec-------CccCeeEEEEecCCCEEEEEccCCcEEEE
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF-------HKGDVNALAAAPSHNRVFSTGSDGQVILY 321 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~s~~~~~l~~~~~dg~i~iw 321 (817)
..-....|.++...++|.|..|+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|..|
T Consensus 258 ~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYY 335 (795)
T ss_dssp TSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEE
T ss_pred cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEe
Confidence 1113467999999999987777766 589999887765433211 235799999999887 6667777778888
Q ss_pred EeecccCCCCCCCCCccccceEEEeecc----ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCC
Q 003467 322 KASCESIGPNDGLSSSEVIKKWIYVGSV----RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG 397 (817)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (817)
+...... ...... ......|.++... +++
T Consensus 336 ~~~~~~~---------------~~~~~~~~~~~l~~~~V~~i~~d---------~~g----------------------- 368 (795)
T 4a2l_A 336 HPIRNRF---------------KNIRNIPYKNSLSDNVVSCIVED---------KDK----------------------- 368 (795)
T ss_dssp CGGGGSS---------------EEECCCTTSSSCSCSSEEEEEEC---------TTS-----------------------
T ss_pred CCCcccc---------------eEEcCCCCCCCCCCCeeEEEEEC---------CCC-----------------------
Confidence 8765431 011110 1123457777654 344
Q ss_pred CcEEEEecCCCeEEEEeCCcccccCCcccCCCCC-CCceeeecceeecCCeE--EEEEeCCeEEEEEecccCCcccCCCC
Q 003467 398 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ-RVPIHLVHNTIFSHTSL--LLVQYSCRLDILSVRLENNVESRSSS 474 (817)
Q Consensus 398 ~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~--~l~~~~~~i~i~~~~~~~~~~~~~~~ 474 (817)
.|..|+.++-|..|+..+............+. ......+.++...+++. ++.+..+.+..++...+..
T Consensus 369 --~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------- 439 (795)
T 4a2l_A 369 --NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------- 439 (795)
T ss_dssp --CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-------
T ss_pred --CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------
Confidence 56678888789999876532111000000000 11224566777777775 4444446676666543321
Q ss_pred CCCCccceeeeeee----cCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC--CccccceeEEEE
Q 003467 475 GGHASTSLLVQVKS----KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL--PRKLQFAHSMIF 548 (817)
Q Consensus 475 ~g~~~~~~~~~~~~----~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~f 548 (817)
..+.. -....|.++...++|++.+.+. +.+.+|+... .....+..... .-....|.++..
T Consensus 440 ---------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~ 505 (795)
T 4a2l_A 440 ---------ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQ----RSFTTIEKEKDGTPVVSKQITTLFR 505 (795)
T ss_dssp ---------EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTT----TEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred ---------EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCC----CeEEEccccccccccCCceEEEEEE
Confidence 11111 1235688999999998766655 5566676432 12111111100 011246889999
Q ss_pred ecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE
Q 003467 549 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 628 (817)
Q Consensus 549 spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 628 (817)
.++|...+... . -|..||..+++. .+..... .. ......|.++...++|++.+... . -|..||.++.+..
T Consensus 506 d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~--~~--~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 506 DSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILP--VS--NVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp CTTCCEEEEES-S-CEEEEEEETTEE--EECCCSC--SC--GGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred CCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCC--CC--CCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 88888766544 4 499999877665 3321000 00 01345799999999998666544 3 4889998877644
Q ss_pred EEEec---CCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCC
Q 003467 629 WFISR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSS 705 (817)
Q Consensus 629 ~~~~~---~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~ 705 (817)
. +.. .....|.++...+ ++.+. .++. +-|..|+.++++...+..... +........++...++|.
T Consensus 576 ~-~~~~~gl~~~~i~~i~~d~-~g~lW-i~t~-~Gl~~~~~~~~~~~~~~~~dG------l~~~~f~~~~~~~~~~G~-- 643 (795)
T 4a2l_A 576 R-YNTTNGLPNNVVYGILEDS-FGRLW-LSTN-RGISCFNPETEKFRNFTESDG------LQSNQFNTASYCRTSVGQ-- 643 (795)
T ss_dssp E-ECGGGTCSCSCEEEEEECT-TSCEE-EEET-TEEEEEETTTTEEEEECGGGT------CSCSCEEEEEEEECTTSC--
T ss_pred E-eCCCCCCchhheEEEEECC-CCCEE-EEcC-CceEEEcCCCCcEEEcCCcCC------CccccCccCceeECCCCe--
Confidence 2 222 2235688888887 77644 4444 558889998876533222111 111111125677777655
Q ss_pred EEEEEcCceEEEEEcCC
Q 003467 706 SVIIYSARAMCVIDFGR 722 (817)
Q Consensus 706 ~~~~~~~~~~~~~d~~~ 722 (817)
+|+-+.+-++.+|...
T Consensus 644 -l~~g~~~Gl~~~~p~~ 659 (795)
T 4a2l_A 644 -MYFGGINGITTFRPEL 659 (795)
T ss_dssp -EEEEETTEEEEECGGG
T ss_pred -EEEecCCceEEEcHHH
Confidence 9999999999998654
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=1.2e-14 Score=146.80 Aligned_cols=242 Identities=11% Similarity=-0.012 Sum_probs=172.3
Q ss_pred eeeeeccCCCceEEEEECCCCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE
Q 003467 5 RNSSIDWKPSPVVALATSADDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS 83 (817)
Q Consensus 5 r~r~~~~h~~~I~~la~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s 83 (817)
+.+.+..+.....+++|+|+|+ +++++..++.|.+||..++ . ..+..+ ...+.+++|+|+|++ +++
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----~~~~~~-~~~~~~l~~~~dg~l------~v~ 85 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----SPEMHP-SHHQNGHCLNKQGHL------IAC 85 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----EEEESS-CSSEEEEEECTTCCE------EEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----EEEECC-CCCcceeeECCCCcE------EEE
Confidence 3455566677889999999998 7778888899999998875 2 233333 567999999999986 777
Q ss_pred eeCCCeEEEEECCCCeEEEEEeecC----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 84 SSIDGSVSEWDLYDLKQKIVLQSID----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 84 ~~~d~~i~vwd~~~~~~~~~~~~~~----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
...++.|.+||..+++......... ..+..++++|+|.
T Consensus 86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-------------------------------------- 127 (296)
T 3e5z_A 86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-------------------------------------- 127 (296)
T ss_dssp ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--------------------------------------
T ss_pred ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--------------------------------------
Confidence 6667899999998888654433222 2456788888882
Q ss_pred ccccccccccCCEEEE----Ee-------------CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEee
Q 003467 160 DELHEQSVVEDRRVAL----AC-------------DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS 222 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 222 (817)
++++ |+ ..+.|..++.. ..+ ..+..+......++|+|||+.|++.+
T Consensus 128 ------------l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~---~~~~~~~~~~~gi~~s~dg~~lv~~~ 190 (296)
T 3e5z_A 128 ------------LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL---SAPIRDRVKPNGLAFLPSGNLLVSDT 190 (296)
T ss_dssp ------------EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE---EEEECCCSSEEEEEECTTSCEEEEET
T ss_pred ------------EEEECCccccccccccccccccCCCcEEEEECCC--CCE---EEeecCCCCCccEEECCCCCEEEEeC
Confidence 4444 22 12344444432 333 33344556778999999999997777
Q ss_pred CCCcEEEEECC-CCce---EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCee
Q 003467 223 SDGYIRSWDAK-LGYE---IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 298 (817)
Q Consensus 223 ~dg~i~vwd~~-~g~~---~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 298 (817)
.++.|.+|++. +|+. ...+ . .+...+..+++.++|.+..+. ++.|.+||.. ++.+..+..+.. +.
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~-~-------~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~ 259 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHF-T-------VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TS 259 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEE-C-------CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CC
T ss_pred CCCeEEEEEECCCCcCcCCCeEe-e-------CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ce
Confidence 78999999987 5554 2222 1 234456678999999766666 8889999987 888888887777 99
Q ss_pred EEEE-ecCCCEEEEEccCCcEEEEEeecc
Q 003467 299 ALAA-APSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 299 ~l~~-s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
+++| +|+++.|++++.+ .+..++..+.
T Consensus 260 ~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 260 NLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred eEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 9999 5899999988776 3444455443
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.5e-14 Score=148.24 Aligned_cols=248 Identities=11% Similarity=0.092 Sum_probs=182.5
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCC------------------------CeEEEEECCCCeEEEEEe-ecCceEEEE
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSID------------------------GSVSEWDLYDLKQKIVLQ-SIDFSIWQM 114 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d------------------------~~i~vwd~~~~~~~~~~~-~~~~~i~~~ 114 (817)
-+.+.+|+++|+|++ +++...+ ++|.+||..+++.+..+. .+-.....+
T Consensus 23 l~~v~~va~d~~G~l------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 23 PGQVSGVALDSKNNL------VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL 96 (329)
T ss_dssp CSCEEEEEECTTCCE------EEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEE
T ss_pred cCCceEEEECCCCCE------EEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEE
Confidence 467999999999986 7776666 479999999999876654 334578899
Q ss_pred eeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCC-ce
Q 003467 115 AVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-EL 193 (817)
Q Consensus 115 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~ 193 (817)
++++++ +++++...++.|++|+..... .+
T Consensus 97 a~d~~g--------------------------------------------------~l~v~d~~~~~v~~~~~~g~~~~~ 126 (329)
T 3fvz_A 97 SIDTDG--------------------------------------------------NYWVTDVALHQVFKLDPHSKEGPL 126 (329)
T ss_dssp EECTTS--------------------------------------------------CEEEEETTTTEEEEECTTCSSCCS
T ss_pred EECCCC--------------------------------------------------CEEEEECCCCEEEEEeCCCCeEEE
Confidence 999988 477777888999999986332 22
Q ss_pred eEeecc---------CCccceEEEEEEcc-CCCEEEEee-CCCcEEEEECCCCceEEEEEeecCC--CCCCCceeEEEeE
Q 003467 194 IYHRSL---------PRVSGRVLSVTWSA-DGNMLYSGS-SDGYIRSWDAKLGYEIYRITVGLGG--LGSGPELCIWSLL 260 (817)
Q Consensus 194 ~~~~~~---------~~h~~~v~~v~~s~-dg~~l~s~~-~dg~i~vwd~~~g~~~~~~~~~~~~--~~~~~~~~v~~v~ 260 (817)
..+ .++......++++| +|.++++.+ .++.|++|| .+|+.+..+.....+ ....+-.....++
T Consensus 127 ---~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 127 ---LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp ---EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred ---EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 222 34455789999999 788888876 689999999 578777766422110 0012334588999
Q ss_pred EecC-C-eEEEEcCCCcEEEEeCCCCeEEEEee--cCccCeeEEEEec------CCCEEEEEccCCcEEEEEeecccCCC
Q 003467 261 SLRC-G-TLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAP------SHNRVFSTGSDGQVILYKASCESIGP 330 (817)
Q Consensus 261 ~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~------~~~~l~~~~~dg~i~iw~~~~~~~~~ 330 (817)
+.|+ + .+++...++.|++||..+|+.+..+. .+...+..++++| +|+..++...+..|++|+..+++
T Consensus 203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~--- 279 (329)
T 3fvz_A 203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE--- 279 (329)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---
Confidence 9998 6 46677778899999999899988874 4566788999999 33322223335589999988776
Q ss_pred CCCCCCccccceEEEeecc---ccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 331 NDGLSSSEVIKKWIYVGSV---RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
.+..+ ..+.....+++++ |++. ++++...+
T Consensus 280 --------------~~~~~~~~~~~~~~p~~ia~~---------~dG~------------------------lyvad~~~ 312 (329)
T 3fvz_A 280 --------------IIDVFKPVRKHFDMPHDIVAS---------EDGT------------------------VYIGDAHT 312 (329)
T ss_dssp --------------EEEEECCSSSCCSSEEEEEEC---------TTSE------------------------EEEEESSS
T ss_pred --------------EEEEEcCCCCccCCeeEEEEC---------CCCC------------------------EEEEECCC
Confidence 44443 3566678888887 7775 89999999
Q ss_pred CeEEEEeCCc
Q 003467 408 TKLFAYCANE 417 (817)
Q Consensus 408 g~i~~~~~~~ 417 (817)
+.|++|++..
T Consensus 313 ~~I~~~~~~~ 322 (329)
T 3fvz_A 313 NTVWKFTLTE 322 (329)
T ss_dssp CCEEEEEEEE
T ss_pred CEEEEEeCCc
Confidence 9999999865
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=5.3e-15 Score=168.89 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=173.4
Q ss_pred CCCceEEEEECCCCCeEEEEecCC-----cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 12 KPSPVVALATSADDSQVAAAREDG-----SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
|...+..++|||||++||.+..++ .|.+||+.+++. ...++.+ ..+.+++|+|||+. |+.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~---~~~~~~~---~~~~~~~wspDg~~------l~~~~~ 190 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---LPDVLER---VKFSCMAWTHDGKG------MFYNAY 190 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---EEEEEEE---ECSCCEEECTTSSE------EEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---CcccccC---cccceEEEEeCCCE------EEEEEE
Confidence 444688999999999999876543 899999999873 2223332 23678999999987 888887
Q ss_pred CCe----------------EEEEECCCCeEE--EEEe--ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCC
Q 003467 87 DGS----------------VSEWDLYDLKQK--IVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSD 146 (817)
Q Consensus 87 d~~----------------i~vwd~~~~~~~--~~~~--~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (817)
++. |.+|++.++... ..+. .+...+..++|+|||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~------------------------- 245 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR------------------------- 245 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-------------------------
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-------------------------
Confidence 765 999999887632 2223 2455678999999994
Q ss_pred CccccccCCCCCCccccccccccCCEEEEEeC-----CCcEEEEEecC------CC-ceeEeeccCCccceEEEEEEccC
Q 003467 147 DHETSESENDSDSDELHEQSVVEDRRVALACD-----DGCVRIYRITD------SD-ELIYHRSLPRVSGRVLSVTWSAD 214 (817)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~h~~~v~~v~~s~d 214 (817)
+|+.++. +..|++||+.+ +. .+ +.+..+...+.. .|+|+
T Consensus 246 -------------------------~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 246 -------------------------YVLLSIREGCDPVNRLWYCDLQQESNGITGILKW---VKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp -------------------------EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC---EEEECSSSSCEE-EEEEE
T ss_pred -------------------------EEEEEEEccCCCccEEEEEECcccccccCCccce---EEeeCCCCcEEE-EEecc
Confidence 5554443 67899999975 32 23 444455555544 48899
Q ss_pred CCEEEEeeCC----CcEEEEECCCCc--eEEEEEeecCCCCCCCc-eeEEEeEEecCC-eEEEEcCCCc--EEEEeCCCC
Q 003467 215 GNMLYSGSSD----GYIRSWDAKLGY--EIYRITVGLGGLGSGPE-LCIWSLLSLRCG-TLVSADSTGS--VQFWDSRHG 284 (817)
Q Consensus 215 g~~l~s~~~d----g~i~vwd~~~g~--~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~s~~~dg~--i~iwd~~~~ 284 (817)
|+.|+..+.+ +.|.+||+.++. ....+.. ... ..+..+.+++++ .+++...++. |.+||+.+|
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC-------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 9988876653 369999998774 2344442 122 368889998776 5667777774 677788778
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEc----cCCcEEEEEeeccc
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTG----SDGQVILYKASCES 327 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~----~dg~i~iw~~~~~~ 327 (817)
+.+..+..+.+.+..++++|+++.++... ..++|..||+.+++
T Consensus 370 ~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 370 ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88888888888899999999998776432 25789999987654
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=2.2e-14 Score=147.79 Aligned_cols=236 Identities=10% Similarity=0.065 Sum_probs=168.1
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
..|.+++|+|++..++....++.+..|. ++ ....+.++ ...+.+++|+++|++ ++++..++.|.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~-~~~~~~~~~~~~g~l------~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AE----PWLEISKK-GLQLEGLNFDRQGQL------FLLDVFEGNIFKI 71 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CE----EEEEEESS-CCCEEEEEECTTSCE------EEEETTTCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cc----eeEEEecc-CccccCcEECCCCCE------EEEECCCCEEEEE
Confidence 4578899999998888877788999992 22 34556655 456799999999876 7778888999999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
|..+++.......+...+.++++++++ +++
T Consensus 72 d~~~~~~~~~~~~~~~~~~~i~~~~dg--------------------------------------------------~l~ 101 (333)
T 2dg1_A 72 NPETKEIKRPFVSHKANPAAIKIHKDG--------------------------------------------------RLF 101 (333)
T ss_dssp CTTTCCEEEEEECSSSSEEEEEECTTS--------------------------------------------------CEE
T ss_pred eCCCCcEEEEeeCCCCCcceEEECCCC--------------------------------------------------cEE
Confidence 999988766554567789999999998 355
Q ss_pred EEEeCC----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC------CCcEEEEECCCCceEEEEEe
Q 003467 174 ALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 174 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~------dg~i~vwd~~~g~~~~~~~~ 243 (817)
++...+ +.|.+||..++....... -..+...+.+++++|+|+++++... .+.|..+|..+++... +..
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 179 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQ 179 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEc-cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eec
Confidence 555555 689999987554321111 1234567999999999988877654 3566777765554433 321
Q ss_pred ecCCCCCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCC-CeEEEE--------eecCccCeeEEEEecCCCEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRH-GTLLQA--------HSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~-~~~~~~--------~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
....+..++|+|++ .+ ++...++.|.+||..+ +..+.. +..+ ..+..++++++|+.+++.
T Consensus 180 --------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~ 250 (333)
T 2dg1_A 180 --------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM 250 (333)
T ss_dssp --------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE
T ss_pred --------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE
Confidence 22346789999998 34 4555678999999863 332221 1222 467889999999877777
Q ss_pred ccCCcEEEEEee
Q 003467 313 GSDGQVILYKAS 324 (817)
Q Consensus 313 ~~dg~i~iw~~~ 324 (817)
..++.|.+|+..
T Consensus 251 ~~~~~v~~~d~~ 262 (333)
T 2dg1_A 251 YGQGRVLVFNKR 262 (333)
T ss_dssp ETTTEEEEECTT
T ss_pred cCCCEEEEECCC
Confidence 678899999874
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=1.2e-14 Score=150.77 Aligned_cols=223 Identities=11% Similarity=0.047 Sum_probs=153.4
Q ss_pred CceEEEEECCCCCeEEEEecC---C--cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC--
Q 003467 14 SPVVALATSADDSQVAAARED---G--SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-- 86 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~d---g--~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-- 86 (817)
..+.+++|||||++||+++.+ + .|.+||+.+++ .......+ . +.+++|+|||+. |+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~--~-~~~~~wspdg~~------l~~~~~~~ 125 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS----SKKILEAK--N-IRSLEWNEDSRK------LLIVGFKR 125 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE----EEEEEEES--E-EEEEEECTTSSE------EEEEEECC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc----eEEEEcCC--C-ccceeECCCCCE------EEEEEccC
Confidence 457889999999999988654 3 37778887765 23333322 3 999999999987 777663
Q ss_pred -------------------------CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 87 -------------------------DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 87 -------------------------d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
...|.+||+.+++.+..+.. . .+..++|+|++
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--------------------- 182 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--------------------- 182 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE---------------------
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe---------------------
Confidence 25799999999987555554 3 78899999998
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCC------C-cEEEEEecCCCceeEeeccCCccceEEEEEEccC
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD------G-CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD 214 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d 214 (817)
+++++..+ . ...||.+. .... +.+..+ ..+.++ +||
T Consensus 183 ------------------------------~~~~~~~~~~~~~~~~~~~l~~~d-~~~~---~~l~~~-~~~~~~--spd 225 (347)
T 2gop_A 183 ------------------------------IVVNVPHREIIPQYFKFWDIYIWE-DGKE---EKMFEK-VSFYAV--DSD 225 (347)
T ss_dssp ------------------------------EEEEEECCCSSCCSSCCEEEEEEE-TTEE---EEEEEE-ESEEEE--EEC
T ss_pred ------------------------------EEEEEecccccccccccccEEEeC-CCce---EEeccC-cceeeE--CCC
Confidence 33333332 1 34555554 3333 233334 455554 999
Q ss_pred CCEEEEeeCC--------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEE-eEEecCCeEEEEcCCCcEEEEeCCCCe
Q 003467 215 GNMLYSGSSD--------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGT 285 (817)
Q Consensus 215 g~~l~s~~~d--------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (817)
|++|+.++.+ ..|.+|| +++.. .+. ..+...+.. +.|+ |+.+++++.++.+++| +.+++
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~-------~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GIL-------DEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESS-------TTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSS
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceE-ecc-------ccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCc
Confidence 9999887754 3688888 55432 222 145667776 8899 8877788889999999 87666
Q ss_pred EEEEeecCccCeeEEEEecCCCEEEEEccCCcE-EEEEee
Q 003467 286 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV-ILYKAS 324 (817)
Q Consensus 286 ~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i-~iw~~~ 324 (817)
.. .+..+...|.+++|+| ..+++++.++.. .+|.+.
T Consensus 294 ~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 294 IK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 54 4444578899999999 677777776655 777775
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=1.9e-13 Score=140.71 Aligned_cols=241 Identities=12% Similarity=0.019 Sum_probs=162.5
Q ss_pred eccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC-
Q 003467 9 IDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID- 87 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d- 87 (817)
+..+...+.+++|+|+|++++++..++.|.+||..+++ .......+ ...+.+++|+|+|++ +++...+
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~-~~~~~~i~~~~dg~l------~v~~~~~~ 108 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----IKRPFVSH-KANPAAIKIHKDGRL------FVCYLGDF 108 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC----EEEEEECS-SSSEEEEEECTTSCE------EEEECTTS
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc----EEEEeeCC-CCCcceEEECCCCcE------EEEeCCCC
Confidence 34556678999999999988888888999999998876 23323233 568999999999976 6666555
Q ss_pred ---CeEEEEECCCCeEEEEEe--ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 88 ---GSVSEWDLYDLKQKIVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 88 ---~~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
+.|.+||..+++....+. .+...+..++++|++
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g------------------------------------------ 146 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG------------------------------------------ 146 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS------------------------------------------
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC------------------------------------------
Confidence 689999998877654443 245678999999988
Q ss_pred cccccccCCEEEEEeC------CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCcEEEEECCC-
Q 003467 163 HEQSVVEDRRVALACD------DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKL- 234 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~- 234 (817)
.++++... .+.|..++..++ .+ ..+..+...+..++|+|+|+.|+.+ +.++.|.+||+.+
T Consensus 147 --------~l~v~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 147 --------GFYFTDFRGYSTNPLGGVYYVSPDFR-TV---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp --------CEEEEECCCBTTBCCEEEEEECTTSC-CE---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred --------CEEEEeccccccCCCceEEEEeCCCC-EE---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 24443332 244555554332 23 1222233457899999999866544 5578999999864
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEEEeecCcc------CeeEEEEecCCC
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQAHSFHKG------DVNALAAAPSHN 307 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~s~~~~ 307 (817)
+.....+........ .....+..+++.++|.+ ++...++.|.+||.+ ++.+..+..+.. .+.+++|+||++
T Consensus 215 g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 215 GVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp SSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CcCcccccceEEEec-CCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCC
Confidence 443332210000000 11146788999999954 445567889999984 777777765443 689999999988
Q ss_pred EEEEEccCC
Q 003467 308 RVFSTGSDG 316 (817)
Q Consensus 308 ~l~~~~~dg 316 (817)
.|++++.++
T Consensus 293 ~L~v~~~~g 301 (333)
T 2dg1_A 293 QLIICSNDI 301 (333)
T ss_dssp EEEEEEECG
T ss_pred EEEEEeCcc
Confidence 887766653
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=1e-13 Score=140.47 Aligned_cols=299 Identities=13% Similarity=0.033 Sum_probs=202.0
Q ss_pred EEEccCCCEEEEeeC-----CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc----------C
Q 003467 209 VTWSADGNMLYSGSS-----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------S 272 (817)
Q Consensus 209 v~~s~dg~~l~s~~~-----dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~----------~ 272 (817)
....|+++.+++... ++.|.+.|..+++.+.++..+ .. + . ++++||| ++..+. .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-------~~-P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------FL-P-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------SS-C-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-------CC-C-c-EEECCCCCEEEEEcccccccccCCC
Confidence 445789998888765 579999999999999999852 22 2 3 9999999 444443 3
Q ss_pred CCcEEEEeCCCCeEEEEeecCc-------cCeeEEEEecCCCEEEEEcc--CCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 273 TGSVQFWDSRHGTLLQAHSFHK-------GDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
++.|.+||..+++.+.++.... .....++|+|||++++++.. ++.|.++|+.+.+
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~---------------- 171 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA---------------- 171 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE----------------
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc----------------
Confidence 5789999999999988875422 24667999999999998864 6899999999887
Q ss_pred EEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCC
Q 003467 344 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 423 (817)
Q Consensus 344 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~ 423 (817)
.+.++..... ...+ |.+. ..+++.+.||.+.+.++........
T Consensus 172 -vv~tI~v~g~---~~~~----------P~g~-----------------------~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 172 -FKRMLDVPDC---YHIF----------PTAP-----------------------DTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp -EEEEEECCSE---EEEE----------EEET-----------------------TEEEEEETTSCEEEEECCSSSCCEE
T ss_pred -EEEEEECCCc---ceee----------cCCC-----------------------ceeEEECCCCCEEEEECCCCCeEEE
Confidence 4444432111 1112 3221 3667888899888888764221100
Q ss_pred cccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeE-EEEe-cC
Q 003467 424 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII-CSTI-SN 501 (817)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~-~~~~-s~ 501 (817)
.. . . ........+. ..+| .+
T Consensus 215 ----------------------------~~----------~-~-------------------~~~~~~~~~~~~~~~~~~ 236 (386)
T 3sjl_D 215 ----------------------------TH----------T-E-------------------VFHPEDEFLINHPAYSQK 236 (386)
T ss_dssp ----------------------------EE----------C-C-------------------CCSCTTSCBCSCCEEETT
T ss_pred ----------------------------ee----------c-c-------------------eeccccccccccceeEcC
Confidence 00 0 0 0000001111 1234 47
Q ss_pred CCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC-------Cc-cccceeEEEEecCCCEEEEEec----------CCc
Q 003467 502 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-------PR-KLQFAHSMIFSYDSSQLIIAGH----------DRR 563 (817)
Q Consensus 502 ~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~-------~~-~~~~i~~~~fspd~~~l~~~~~----------dg~ 563 (817)
+|+++.++.++.++++++... ...+ +.+..+ .+ .......++++|++++|++... ..+
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~--~~~v--~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~ 312 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSG--DAKF--LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 312 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTS--SCEE--CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred CCcEEEEeCCCEEEEEECCCC--ccee--ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence 888777777888888887541 1111 111110 00 1124456888999999988753 247
Q ss_pred EEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEEEe-CCCcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 564 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 564 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
|.++|+.+++.++++.. ...+..|++|+|++ +|++.. .++.|.|+|..+++....++.. ...+.
T Consensus 313 V~viD~~t~kv~~~i~v------------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~--~~p~~ 378 (386)
T 3sjl_D 313 VVVLDAKTGERLAKFEM------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQ 378 (386)
T ss_dssp EEEEETTTCCEEEEEEE------------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCC
T ss_pred EEEEECCCCeEEEEEEC------------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC--CCCce
Confidence 99999999999999985 45789999999997 666654 4899999999999988888654 35677
Q ss_pred EEecC
Q 003467 642 AGFPP 646 (817)
Q Consensus 642 l~~sp 646 (817)
|.+++
T Consensus 379 l~~s~ 383 (386)
T 3sjl_D 379 VITTA 383 (386)
T ss_dssp EEEEC
T ss_pred eEECC
Confidence 78877
No 187
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=2.8e-13 Score=135.90 Aligned_cols=236 Identities=9% Similarity=0.115 Sum_probs=169.6
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee------cCceEEEEeee-cCCCccceeeccCcc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS------IDFSIWQMAVA-PSNSSLMHAVTNSDH 132 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~------~~~~i~~~~~s-~~~~~~~~~~~~~~~ 132 (817)
-..+.++++++++.+ +++...++.|.+||.. ++.+..+.. +...+..+++. +++
T Consensus 29 ~~~p~~v~~~~~g~l------~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g------------ 89 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDI------IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG------------ 89 (286)
T ss_dssp BSCEEEEEECTTCCE------EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT------------
T ss_pred cCCCceEEECCCCCE------EEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC------------
Confidence 357899999999876 7777888999999987 666666542 23467888884 555
Q ss_pred ccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-C-CCcEEEEEecCCCceeEeeccC-CccceEEEE
Q 003467 133 IGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-D-DGCVRIYRITDSDELIYHRSLP-RVSGRVLSV 209 (817)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v 209 (817)
.+.++. . ++.|++||. ++..+ ..+. .+...+.++
T Consensus 90 ---------------------------------------~l~v~~~~~~~~i~~~d~-~g~~~---~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 90 ---------------------------------------DIIVTERSPTHQIQIYNQ-YGQFV---RKFGATILQHPRGV 126 (286)
T ss_dssp ---------------------------------------EEEEEECGGGCEEEEECT-TSCEE---EEECTTTCSCEEEE
T ss_pred ---------------------------------------eEEEEcCCCCCEEEEECC-CCcEE---EEecCccCCCceEE
Confidence 444444 3 789999994 45444 2232 344578999
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEE
Q 003467 210 TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQ 288 (817)
Q Consensus 210 ~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~ 288 (817)
+++|+|+++++...++.|.+||. .++.+..+... .+...+..+++.++|. +++...++.|.+||.. ++.+.
T Consensus 127 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 198 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCS------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR 198 (286)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TSCEEEEEECT------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred EEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCC------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEE
Confidence 99999998888778899999995 56666665421 2345688999999995 5555668899999985 66666
Q ss_pred EeecC--ccCeeEEEEecCCCEEEEEccCC-cEEEEEeecccCCCCCCCCCccccceEEEeeccccCC--CccceeEeec
Q 003467 289 AHSFH--KGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT--HDVRALTVAV 363 (817)
Q Consensus 289 ~~~~h--~~~v~~l~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~ 363 (817)
.+..+ ...+..++++++|+.+++...++ .|.+|+... + .+..+..+. ..+.++++.
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~-----------------~~~~~~~~~~~~~~~~i~~~- 259 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q-----------------LISALESKVKHAQCFDVALM- 259 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C-----------------EEEEEEESSCCSCEEEEEEE-
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-C-----------------EEEEEcccCCCCcceeEEEC-
Confidence 66543 36789999999998888877775 999998543 2 233333332 235678887
Q ss_pred ccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 364 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
|+++ ++++ +.++.|++|+...
T Consensus 260 --------~~g~------------------------l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 260 --------DDGS------------------------VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp --------TTTE------------------------EEEE-ETTTEEEEEECSC
T ss_pred --------CCCc------------------------EEEE-CCCCeEEEEEccc
Confidence 7774 6666 5699999998764
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=7.9e-14 Score=159.21 Aligned_cols=255 Identities=9% Similarity=-0.007 Sum_probs=163.0
Q ss_pred CCCCeEEEEecCC-----cEEEEecCCCCCCcEEEEE---EcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC-----e
Q 003467 23 ADDSQVAAAREDG-----SLEIWLVSPGTSGWHCQLT---VHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG-----S 89 (817)
Q Consensus 23 pdg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~---~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~-----~ 89 (817)
|||++++....++ .|.+.+..+++. ..... +...+...+.+++|||||++ ||.+..++ .
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~lld~~~l~~~~~~~~~~~~~SPDg~~------la~~~~~~G~~~~~ 152 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA--RVFLDPNILSDDGTVALRGYAFSEDGEY------FAYGLSASGSDWVT 152 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC--EEEECGGGGCTTSCEEEEEEEECTTSSE------EEEEEEETTCSCEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc--EEEECHHHhccCCCEEEEEEEECCCCCE------EEEEEcCCCCceEE
Confidence 8999998765432 233344334432 11211 11112346899999999987 77665432 8
Q ss_pred EEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 90 VSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 90 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
|++||+.+|+.+..... ...+..++|+||+.
T Consensus 153 i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~------------------------------------------------ 183 (710)
T 2xdw_A 153 IKFMKVDGAKELPDVLE-RVKFSCMAWTHDGK------------------------------------------------ 183 (710)
T ss_dssp EEEEETTTTEEEEEEEE-EECSCCEEECTTSS------------------------------------------------
T ss_pred EEEEECCCCCCCccccc-CcccceEEEEeCCC------------------------------------------------
Confidence 99999999997764322 23367899999995
Q ss_pred CCEEEEEeCCC----------------cEEEEEecCCCce-eEeeccCCccceEEEEEEccCCCEEEEeeC-----CCcE
Q 003467 170 DRRVALACDDG----------------CVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYI 227 (817)
Q Consensus 170 ~~~l~~~~~dg----------------~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-----dg~i 227 (817)
.|+.++.++ .|++|++.++... ........|...+..++|+|||++|+..+. +..|
T Consensus 184 --~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 184 --GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL 261 (710)
T ss_dssp --EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred --EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEE
Confidence 444444443 3999999765421 112233446667889999999999988765 5689
Q ss_pred EEEECCC------Cc-eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC----CCcEEEEeCCCCe--EEEEeecC
Q 003467 228 RSWDAKL------GY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS----TGSVQFWDSRHGT--LLQAHSFH 293 (817)
Q Consensus 228 ~vwd~~~------g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~----dg~i~iwd~~~~~--~~~~~~~h 293 (817)
.+||+.+ +. ....+. .+...+.. .|+++| .|+..+. .+.|.+||+.++. ....+..|
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~l~--------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 332 (710)
T 2xdw_A 262 WYCDLQQESNGITGILKWVKLI--------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE 332 (710)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEE--------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEEECcccccccCCccceEEee--------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC
Confidence 9999987 53 355555 23333443 467777 4544433 2369999998764 23445555
Q ss_pred cc--CeeEEEEecCCCEEEEEccCCcEEEE--EeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 294 KG--DVNALAAAPSHNRVFSTGSDGQVILY--KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 294 ~~--~v~~l~~s~~~~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
.. .+..++|++++..+++...|+..++| ++.++. .+..+..+...+..++++
T Consensus 333 ~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-----------------~~~~l~~~~~~v~~~~~s 388 (710)
T 2xdw_A 333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-----------------LLKIFPLEVGSVVGYSGQ 388 (710)
T ss_dssp CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-----------------EEEEECCCSSEEEEEECC
T ss_pred CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-----------------EEEecCCCCceEEEEecC
Confidence 44 57789999777788888888865555 543443 344555566667777665
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=2.2e-12 Score=130.39 Aligned_cols=240 Identities=9% Similarity=0.056 Sum_probs=170.4
Q ss_pred ccCCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCe
Q 003467 10 DWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGS 89 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~ 89 (817)
..+...+.++++.++|+++++...++.|.+||.. ++. ........ ...+.+++++++|.. +++...++.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---~~~~~~~~-~~~~~~i~~~~~g~l------~v~~~~~~~ 79 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---TEYPLPTP-DAKVMCLTISSDGEV------WFTENAANK 79 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---EEEECSST-TCCEEEEEECTTSCE------EEEETTTTE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---EEecCCcc-cCceeeEEECCCCCE------EEeCCCCCe
Confidence 3455789999999999987776667889999988 541 12222222 468999999999875 666666889
Q ss_pred EEEEECCCCeEE-EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 90 VSEWDLYDLKQK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 90 i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
|..||.. ++.. ..+......+..+++.+++
T Consensus 80 i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g------------------------------------------------ 110 (299)
T 2z2n_A 80 IGRITKK-GIIKEYTLPNPDSAPYGITEGPNG------------------------------------------------ 110 (299)
T ss_dssp EEEECTT-SCEEEEECSSTTCCEEEEEECTTS------------------------------------------------
T ss_pred EEEECCC-CcEEEEeCCCcCCCceeeEECCCC------------------------------------------------
Confidence 9999986 4422 2222345678889998887
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.++++...++.|.+||. ++.... ..+..+...+.+++++++|+..++...++.|..||. +++... +...
T Consensus 111 --~l~v~~~~~~~i~~~d~-~g~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---- 179 (299)
T 2z2n_A 111 --DIWFTEMNGNRIGRITD-DGKIRE--YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIP---- 179 (299)
T ss_dssp --CEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECS----
T ss_pred --CEEEEecCCceEEEECC-CCCEEE--ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCC----
Confidence 35555566788999988 343322 223334567899999999988887777789999998 666543 3211
Q ss_pred CCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEEE-eecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 249 GSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.....+..+++.++|.+ ++...++.|.+||. +++.... ...+...+.+++++++|+.+++...++.|..|+.
T Consensus 180 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 180 --TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 23456789999999954 44455788999999 6664432 3334567899999999986666657789999987
No 190
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=6.1e-10 Score=128.48 Aligned_cols=548 Identities=10% Similarity=0.075 Sum_probs=316.8
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEc-------CCCCCcEEEEEEee--cCCCCCCCceEEEe
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVH-------GDPKSRISSLVWCH--AGKMGLPGGRLFSS 84 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-------g~~~~~V~~l~~s~--~~~~~~~~~~l~s~ 84 (817)
..|++|...++|+.|-+|..++-+..||..+++ ...+. +-....|.++.... ++. |..+
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-----f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-------lwi~ 133 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQS-----FSVYQYNPEDPQSLITNDVTHITSSVQAGKG-------LWVC 133 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTE-----EEEECCCTTCSSSCSCSCEEEEEECSSTTSE-------EEEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCe-----EEeeccccCCCCCcccCcceEEEecCccCCC-------EEEE
Confidence 459999999988845566676469999988764 22331 11123688888776 554 5556
Q ss_pred eCCCeEEEEECCCCeEEEEEe-----ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 85 SIDGSVSEWDLYDLKQKIVLQ-----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 85 ~~d~~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
+.++-|..+|..+++...... .....|.++...+++
T Consensus 134 t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--------------------------------------- 174 (781)
T 3v9f_A 134 TYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDG--------------------------------------- 174 (781)
T ss_dssp ESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETT---------------------------------------
T ss_pred ECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCC---------------------------------------
Confidence 644558999988766433211 112457777777666
Q ss_pred ccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC----CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCC
Q 003467 160 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP----RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g 235 (817)
.|.+|+.++-|..||..++....+..... -....|.++...++|.+.+. +.+ -|.+||..++
T Consensus 175 ------------~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 175 ------------KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTE 240 (781)
T ss_dssp ------------EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTT
T ss_pred ------------CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCC
Confidence 77778877668888876432211110000 01356999999888876554 444 6889998766
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee--------------cCccCeeEEE
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS--------------FHKGDVNALA 301 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~ 301 (817)
+... +.........-....|.++...++|.|..|+..+-|.++|..+++...... .....|.++.
T Consensus 241 ~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~ 319 (781)
T 3v9f_A 241 TFTN-FHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF 319 (781)
T ss_dssp EEEC------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE
T ss_pred cEEE-EEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE
Confidence 5432 211100000013456999999999988888876678999988765332111 1345789999
Q ss_pred EecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEee----ccccCCCccceeEeecccCCCCCCCccccc
Q 003467 302 AAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG----SVRAHTHDVRALTVAVPISREDPLPEDKVK 377 (817)
Q Consensus 302 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 377 (817)
..++|. |..|+.++-|..++....... .+.... ........|.+++.. +++
T Consensus 320 ~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~v~~i~~d---------~~g--- 374 (781)
T 3v9f_A 320 QDSFNN-IWIGTWGGGINFISNAPPTFH------------TWSYSPTQMNESSLSNKVVSSVCDD---------GQG--- 374 (781)
T ss_dssp ECSSCC-EEEEEBSSCEEEECSSCCSCE------------EEC----CCCSSCCSSSCEEEEEEC---------TTS---
T ss_pred EeCCCC-EEEEecCCeEEEeCCCCCcce------------eeccCccccccCCCCCcceEEEEEc---------CCC---
Confidence 998886 666777777888887654310 000000 011123457777664 334
Q ss_pred cccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeC-Ce
Q 003467 378 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CR 456 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~~ 456 (817)
.|..|+.++-|..++..+....... .+.......+.++...+++.+.+... +.
T Consensus 375 ----------------------~lWigt~~~Gl~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~d~~g~lWigt~~~G 428 (781)
T 3v9f_A 375 ----------------------KLWIGTDGGGINVFENGKRVAIYNK----ENRELLSNSVLCSLKDSEGNLWFGTYLGN 428 (781)
T ss_dssp ----------------------CEEEEEBSSCEEEEETTEEEEECC---------CCCSBEEEEEECTTSCEEEEETTEE
T ss_pred ----------------------CEEEEeCCCcEEEEECCCCeEEEcc----CCCCCCCcceEEEEECCCCCEEEEeccCC
Confidence 5667777777888887653221110 11112234566777776665554433 34
Q ss_pred EEEEEecccCCcccCCCCCCCCccceeeeeee--cCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeee
Q 003467 457 LDILSVRLENNVESRSSSGGHASTSLLVQVKS--KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR 534 (817)
Q Consensus 457 i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~ 534 (817)
+..++..... +..+.. .....|.++...++|.+.+... +.+..|+... ..... ....
T Consensus 429 l~~~~~~~~~----------------~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~--~~~~~--~~~~ 487 (781)
T 3v9f_A 429 ISYYNTRLKK----------------FQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS--KKVIH--HYDT 487 (781)
T ss_dssp EEEECSSSCE----------------EEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSS--SSCCE--EECT
T ss_pred EEEEcCCCCc----------------EEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC--CeEEe--cccC
Confidence 4444332211 111111 1235688888888888666555 5666666543 11111 1111
Q ss_pred c-CCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC
Q 003467 535 Q-LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC 613 (817)
Q Consensus 535 ~-~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~ 613 (817)
. .......|.++...++|.+.+ |+.++-+..||..+++.. .+.... ......|.++...++|++.++..
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~-------~l~~~~i~~i~~d~~g~lWi~T~- 557 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYE-------GFCSNTINQIYRSSKGQMWLATG- 557 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTTT-------TCSCSCEEEEEECTTSCEEEEET-
T ss_pred cccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCCC-------CCCCCeeEEEEECCCCCEEEEEC-
Confidence 1 001134688999888888665 444334888987665433 332110 01245789999999998666554
Q ss_pred CCcEEEEECCCcceEEEEec---CCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCC
Q 003467 614 FGDVYIFNLEIQRQHWFISR---LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP 690 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~ 690 (817)
+|.|..||.++++... +.. .....|.++...+ ++. |..++..| |..|+.++++...+..... +....
T Consensus 558 ~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~-~g~-lW~~t~~G-l~~~~~~~~~~~~~~~~dG------l~~~~ 627 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDK-NGN-IWASTNTG-ISCYITSKKCFYTYDHSNN------IPQGS 627 (781)
T ss_dssp TEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECS-SSC-EEEECSSC-EEEEETTTTEEEEECGGGT------CCSSC
T ss_pred CCceEEECCCCCcEEE-ccccCCCCCceEEEEEECC-CCC-EEEEcCCc-eEEEECCCCceEEecccCC------ccccc
Confidence 7755889988776432 222 2224688888887 775 55555555 8889998877544322211 11111
Q ss_pred CceeEEEECCCCCCCEEEEEcCceEEEEEcCC
Q 003467 691 GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 691 ~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
....++...++|. +|+-+..-++.+|...
T Consensus 628 f~~~~~~~~~~G~---l~~g~~~Gl~~f~p~~ 656 (781)
T 3v9f_A 628 FISGCVTKDHNGL---IYFGSINGLCFFNPDI 656 (781)
T ss_dssp EEEEEEEECTTSC---EEEEETTEEEEECSCC
T ss_pred cccCceEECCCCE---EEEECCCceEEEChhh
Confidence 2235677777755 9999999999998654
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=1.3e-13 Score=136.35 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=162.4
Q ss_pred CCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEE
Q 003467 23 ADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKI 102 (817)
Q Consensus 23 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 102 (817)
..+++|++++.++.|.+||..+++. +..+..+....+.+++++|+|++ |+ +.++.|.+||. +|+.+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~----~w~~~~~~~~~~~~~~~~pdG~i------lv--s~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEI----VWEYPLEKGWECNSVAATKAGEI------LF--SYSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEE----EEEEECCTTCCCCEEEECTTSCE------EE--ECBSEEEEECT-TSCEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeE----EEEeCCCccCCCcCeEECCCCCE------EE--eCCCCEEEECC-CCCEEE
Confidence 3467899999999999999989984 44444442246889999999986 77 45778999999 899999
Q ss_pred EEeec-CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeC-CC
Q 003467 103 VLQSI-DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD-DG 180 (817)
Q Consensus 103 ~~~~~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg 180 (817)
.+..+ ...+.++.+.++| +.+++.+. ++
T Consensus 70 ~~~~~~~~~~~~~~~~~dG--------------------------------------------------~~lv~~~~~~~ 99 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDG--------------------------------------------------NALVAWCGHPS 99 (276)
T ss_dssp EEECCTTCEEEEEEECTTS--------------------------------------------------CEEEEEESTTE
T ss_pred EEcCCCCccccccEECCCC--------------------------------------------------CEEEEecCCCC
Confidence 98865 3578889999988 46776666 66
Q ss_pred cEEEEEecCCCceeEee---ccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEE
Q 003467 181 CVRIYRITDSDELIYHR---SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 257 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~---~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~ 257 (817)
.|..+|. +++.+.... ....+......+++.++|++|++...++.|..||.. |+.+.++.. .....
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~~~ 168 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGTPF 168 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSCCC
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCCcc
Confidence 6766665 344432211 111222345567789999999999999999999987 999999873 23445
Q ss_pred EeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc------cCeeEEEEecCCCEEEEE
Q 003467 258 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK------GDVNALAAAPSHNRVFST 312 (817)
Q Consensus 258 ~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~s~~~~~l~~~ 312 (817)
++.+.++| .++++..++.|..+|..+|+.+.++..+. ..+..++..++|+.+++.
T Consensus 169 ~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 169 SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 67778888 56666667789999999999999987542 237888899999988776
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=6.8e-15 Score=167.43 Aligned_cols=244 Identities=12% Similarity=0.054 Sum_probs=166.0
Q ss_pred cCCCceEEEEECCCCCeEEEE-----ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 11 WKPSPVVALATSADDSQVAAA-----REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~-----~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+|...+.+++|||||++||.+ +.+.+|++||+.+++... ...+.+. ...+++|+|||+. |+.++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~---~~~~~~wspDg~~------l~~~~ 186 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGG---KYATPKWTPDSKG------FYYEW 186 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCC---TTCCCEECTTSSE------EEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcc---cccceEEecCCCE------EEEEE
Confidence 455579999999999999954 345689999999987310 0112211 1268999999987 99888
Q ss_pred CCCe-------------EEEEECCCCe----EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCc
Q 003467 86 IDGS-------------VSEWDLYDLK----QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDH 148 (817)
Q Consensus 86 ~d~~-------------i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (817)
.|.. |.+|++.++. ++.....+...+..++|+|||.
T Consensus 187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--------------------------- 239 (695)
T 2bkl_A 187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--------------------------- 239 (695)
T ss_dssp CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC---------------------------
T ss_pred ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC---------------------------
Confidence 8766 9999999876 3333334556788999999994
Q ss_pred cccccCCCCCCccccccccccCCEEEEEeCCC----cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-
Q 003467 149 ETSESENDSDSDELHEQSVVEDRRVALACDDG----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS- 223 (817)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~- 223 (817)
+|+.++.++ .|++|+..++ .+ +.+..+...+....| ++|+ |+..+.
T Consensus 240 -----------------------~l~~~~~~~~~~~~l~~~~~~~~-~~---~~l~~~~~~~~~~~~-~~g~-l~~~s~~ 290 (695)
T 2bkl_A 240 -----------------------YLFVYILRGWSENDVYWKRPGEK-DF---RLLVKGVGAKYEVHA-WKDR-FYVLTDE 290 (695)
T ss_dssp -----------------------CEEEEEEETTTEEEEEEECTTCS-SC---EEEEECSSCCEEEEE-ETTE-EEEEECT
T ss_pred -----------------------EEEEEEeCCCCceEEEEEcCCCC-ce---EEeecCCCceEEEEe-cCCc-EEEEECC
Confidence 555555444 5666654433 33 344445555666666 5666 544443
Q ss_pred ---CCcEEEEECCCCce--EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC-CCeEEEEeecC-ccC
Q 003467 224 ---DGYIRSWDAKLGYE--IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR-HGTLLQAHSFH-KGD 296 (817)
Q Consensus 224 ---dg~i~vwd~~~g~~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h-~~~ 296 (817)
++.|.+||+.++.. ...+... .....+..++++.+..+++...++..++|.+. +++....+..+ .+.
T Consensus 291 ~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 364 (695)
T 2bkl_A 291 GAPRQRVFEVDPAKPARASWKEIVPE------DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA 364 (695)
T ss_dssp TCTTCEEEEEBTTBCSGGGCEEEECC------CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE
T ss_pred CCCCCEEEEEeCCCCCccCCeEEecC------CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE
Confidence 57899999987753 2344311 12556888888844467888888888777554 36666667655 667
Q ss_pred eeEEEEecCCCEEEEE----ccCCcEEEEEeeccc
Q 003467 297 VNALAAAPSHNRVFST----GSDGQVILYKASCES 327 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~----~~dg~i~iw~~~~~~ 327 (817)
+..++++|+++.++.. ...++|++||+.+++
T Consensus 365 v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 365 ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888999999877743 335789999987754
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=1e-13 Score=137.88 Aligned_cols=239 Identities=11% Similarity=-0.017 Sum_probs=165.9
Q ss_pred ceEEEEECCCCCeEE-EEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 15 PVVALATSADDSQVA-AAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 15 ~I~~la~spdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
...+++++|+|++++ +...++.|.+||..+.. ...+.......+.+++++++|++ +++.. ++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l------~v~~~-~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-----TTVLPFNGLYQPQGLAVDGAGTV------YVTDF-NNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTTCCE------EEEET-TTEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc-----cceEeeCCcCCcceeEECCCCCE------EEEcC-CCEEEEE
Confidence 678999999999776 44677899999976654 22222222356889999999875 55554 8899999
Q ss_pred ECCCCeEEEEEe-ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 94 DLYDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 94 d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
|..+.... .+. .....+..+++++++ .+
T Consensus 93 d~~~~~~~-~~~~~~~~~p~~i~~~~~g--------------------------------------------------~l 121 (270)
T 1rwi_B 93 AAGSNNQT-VLPFDGLNYPEGLAVDTQG--------------------------------------------------AV 121 (270)
T ss_dssp CTTCSCCE-ECCCCSCSSEEEEEECTTC--------------------------------------------------CE
T ss_pred eCCCceEe-eeecCCcCCCcceEECCCC--------------------------------------------------CE
Confidence 98775533 332 223568899999987 35
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCC
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 252 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~ 252 (817)
+++...++.|.+|+..+.... .........+.+++++++|+++++...++.|.+||...+....... ..
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~--------~~ 190 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQT---VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF--------TD 190 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCE---ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC--------SS
T ss_pred EEEECCCCEEEEEECCCceeE---eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc--------cC
Confidence 556667788999975433222 1122233467889999999977777778899999987665432211 23
Q ss_pred ceeEEEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 253 ELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 253 ~~~v~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
...+..+++.++|. +++...++.|.+||............+...+.+++++++|+.+++...++.|+++++...+
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 35678999999985 5555568899999997654433222334678999999999988888889999999987765
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=5.7e-14 Score=159.86 Aligned_cols=232 Identities=9% Similarity=-0.031 Sum_probs=152.2
Q ss_pred CCCCCeEEEEecCC---cEEEEec--CCCCCCcEEEEEEc---CCCCCcEEEEEEeecCCCCCCCceEE-----EeeCCC
Q 003467 22 SADDSQVAAAREDG---SLEIWLV--SPGTSGWHCQLTVH---GDPKSRISSLVWCHAGKMGLPGGRLF-----SSSIDG 88 (817)
Q Consensus 22 spdg~~la~~~~dg---~i~iwd~--~~~~~~~~~~~~~~---g~~~~~V~~l~~s~~~~~~~~~~~l~-----s~~~d~ 88 (817)
+|+|++++....++ .-.||-. ..+. +....... ..+...+.+++|||||++ || .++.+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPDG~~------la~~~~~~G~~~~ 147 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWDGKK------VAFAQKPNAADEA 147 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTTSSE------EEEEEEETTCSCC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCCCCE------EEEEECCCCCceE
Confidence 48999999876544 3455544 3443 22222111 112457999999999987 77 444557
Q ss_pred eEEEEECCCCeEEEEEeecCceE--EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSI--WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
+|++||+.+|+.+. ..+...+ ..++|+||+.
T Consensus 148 ~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~--------------------------------------------- 180 (695)
T 2bkl_A 148 VLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSK--------------------------------------------- 180 (695)
T ss_dssp EEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSS---------------------------------------------
T ss_pred EEEEEECCCCCCcC--CcccCcccccceEEecCCC---------------------------------------------
Confidence 89999999998641 1122222 6789999994
Q ss_pred cccCCEEEEEeCCCc-------------EEEEEecCCCc-eeEeeccCCccceEEEEEEccCCCEEEEeeCCC----cEE
Q 003467 167 VVEDRRVALACDDGC-------------VRIYRITDSDE-LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG----YIR 228 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~-------------i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg----~i~ 228 (817)
.|+.++.+.. |++|++.++.. -........|...+.+++|+|||++|+..+.++ .|.
T Consensus 181 -----~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 181 -----GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp -----EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred -----EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 6666666554 99999976542 122244455667899999999999999888766 778
Q ss_pred EEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEE-Ec---CCCcEEEEeCCCCeE--EEEeecC--ccCeeEE
Q 003467 229 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS-AD---STGSVQFWDSRHGTL--LQAHSFH--KGDVNAL 300 (817)
Q Consensus 229 vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s-~~---~dg~i~iwd~~~~~~--~~~~~~h--~~~v~~l 300 (817)
+|+..++. ...+.. +...+....+ ++|.++. +. .++.|.+||+.++.. ...+..+ ...+..+
T Consensus 256 ~~~~~~~~-~~~l~~--------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVK--------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp EECTTCSS-CEEEEE--------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred EEcCCCCc-eEEeec--------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 88766554 444442 3334444455 4453443 33 257899999987653 2333333 4457888
Q ss_pred EEecCCCEEEEEccCCcEEEEEee
Q 003467 301 AAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 301 ~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
+++ ++..+++...|+..++|.+.
T Consensus 326 ~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 326 SIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEE-CCEEEEEEEECCEEEEEEEe
Confidence 888 67778888889999998776
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=1.2e-11 Score=125.00 Aligned_cols=283 Identities=8% Similarity=0.048 Sum_probs=173.7
Q ss_pred CccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEE-EEcCCCcEEEE
Q 003467 201 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV-SADSTGSVQFW 279 (817)
Q Consensus 201 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~-s~~~dg~i~iw 279 (817)
.+...+.+++++++|+..++...++.|.+||.. ++. ..+... .....+.++++.++|.+. +...++.|..|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLP------TPDAKVMCLTISSDGEVWFTENAANKIGRI 83 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCC------cccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence 445679999999999988777667899999987 543 333321 234678899999999654 44557889999
Q ss_pred eCCCCeEE-EEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccce
Q 003467 280 DSRHGTLL-QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA 358 (817)
Q Consensus 280 d~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (817)
|.. ++.. ..+......+..++++++++.+++...++.|..|+. ++.. .......+...+.+
T Consensus 84 ~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~----------------~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 84 TKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI----------------REYELPNKGSYPSF 145 (299)
T ss_dssp CTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE----------------EEEECSSTTCCEEE
T ss_pred CCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE----------------EEecCCCCCCCCce
Confidence 987 4432 222234567899999999987777767888888876 3320 00001111122233
Q ss_pred eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeee
Q 003467 359 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV 438 (817)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (817)
++
T Consensus 146 i~------------------------------------------------------------------------------ 147 (299)
T 2z2n_A 146 IT------------------------------------------------------------------------------ 147 (299)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
Confidence 33
Q ss_pred cceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEc-CCceEEE
Q 003467 439 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-HVKPSLF 517 (817)
Q Consensus 439 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~-~~~i~l~ 517 (817)
++++|+++++.. .+.+..|
T Consensus 148 ------------------------------------------------------------~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 148 ------------------------------------------------------------LGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp ------------------------------------------------------------ECTTSCEEEEETTTTEEEEE
T ss_pred ------------------------------------------------------------EcCCCCEEEEeCCCCEEEEE
Confidence 333333322221 1223333
Q ss_pred EeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCcee
Q 003467 518 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT 597 (817)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (817)
+. . +.. . ...++.....+..++++++|+.+++...++.|.+||. +++... +.. +.+...+.
T Consensus 168 ~~-~---g~~-~---~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---------~~~~~~~~ 228 (299)
T 2z2n_A 168 TE-S---GDI-T---EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---------PTPNARPH 228 (299)
T ss_dssp CT-T---CCE-E---EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---------SSTTCCEE
T ss_pred cC-C---CcE-E---EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---------CCCCCCce
Confidence 22 1 100 0 0111222335678899999887776666788999998 666433 221 01456789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCc
Q 003467 598 KMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 598 ~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
.++++++|+++++...++.|.+||.. ++........+...+.++++ + ++.++++.. .+.|..++.++++
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEEC---
T ss_pred eEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEcCccc
Confidence 99999999977776677889999984 44322211222357899999 8 887655544 6778888887765
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=1.6e-12 Score=132.67 Aligned_cols=267 Identities=10% Similarity=0.048 Sum_probs=174.2
Q ss_pred CCCcEEEEEecCCCceeEeecc------CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 178 DDGCVRIYRITDSDELIYHRSL------PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~------~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.++.|.+||..+++.. ..+ .........+++. +++..++...++.|.+||..+++.+.++.
T Consensus 15 ~~~~l~~~d~~t~~~~---~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVE---NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------- 81 (328)
T ss_dssp CCBEEEEEETTTTEEE---CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---------
T ss_pred CCceEEEEECCCCEEh---hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---------
Confidence 3789999999866543 221 1122346778775 44555555667899999999999998885
Q ss_pred CceeEEEeEEecCCeEEEEc-CCCcEEEEeCCCCeEEEEeecCc-----cCeeEEEEecCCCEEEEEc--cCCcEEEEEe
Q 003467 252 PELCIWSLLSLRCGTLVSAD-STGSVQFWDSRHGTLLQAHSFHK-----GDVNALAAAPSHNRVFSTG--SDGQVILYKA 323 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~~~~--~dg~i~iw~~ 323 (817)
.......+++++++++..+. .++.|.+||..+++....+.... .....+++ ++..|+++. .++.|.++|.
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEET
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC
Confidence 23457889998899765555 78999999999999887776433 14566777 355666654 4889999999
Q ss_pred ecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEE
Q 003467 324 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS 403 (817)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 403 (817)
.+++ .+..+... .....+++. |+++ ++++
T Consensus 160 ~t~~-----------------~~~~i~~g-~~p~~i~~~---------~dG~------------------------l~v~ 188 (328)
T 3dsm_A 160 ETDK-----------------VVDELTIG-IQPTSLVMD---------KYNK------------------------MWTI 188 (328)
T ss_dssp TTTE-----------------EEEEEECS-SCBCCCEEC---------TTSE------------------------EEEE
T ss_pred CCCe-----------------EEEEEEcC-CCccceEEc---------CCCC------------------------EEEE
Confidence 8776 33333322 224556665 6664 5555
Q ss_pred ecCC----------CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCC
Q 003467 404 AGDD----------TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS 473 (817)
Q Consensus 404 ~~~d----------g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~ 473 (817)
+..+ +.|.++|..+.+
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~------------------------------------------------------ 214 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFT------------------------------------------------------ 214 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTE------------------------------------------------------
T ss_pred ECCCccCCccccCCceEEEEECCCCe------------------------------------------------------
Confidence 4433 567777665422
Q ss_pred CCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCC-
Q 003467 474 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS- 552 (817)
Q Consensus 474 ~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~- 552 (817)
....+..+.......++++|+++++.+++. .+.+|+..... .. ....+.........++++|++
T Consensus 215 --------v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~---~~---~~~~~~~~~~~p~gi~vdp~~g 279 (328)
T 3dsm_A 215 --------VEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADR---VP---VRPFLEFRDTKYYGLTVNPNNG 279 (328)
T ss_dssp --------EEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSS---CC---SSCSBCCCSSCEEEEEECTTTC
T ss_pred --------EEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCc---ee---eeeeecCCCCceEEEEEcCCCC
Confidence 111222221235788999999998888765 77777765411 10 001112123467899999954
Q ss_pred CEEEEE----ecCCcEEEEEccCCceeeeecc
Q 003467 553 SQLIIA----GHDRRIYVVDVSSSELLHTFTP 580 (817)
Q Consensus 553 ~~l~~~----~~dg~i~v~d~~~~~~~~~~~~ 580 (817)
..+++. ..++.|.+||.. ++.+.++..
T Consensus 280 ~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 280 EVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp CEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred eEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 444544 467899999988 998888874
No 197
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.3e-09 Score=123.60 Aligned_cols=555 Identities=9% Similarity=0.085 Sum_probs=315.2
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCC-------CCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGD-------PKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~-------~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
..|++|+-.++|. |=+|..+| +..||-.. +..... ... ....|.+|.-.++|.. |-.++.
T Consensus 19 n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~----f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~------lWigt~ 85 (781)
T 3v9f_A 19 NYVLSITQDKQGF-LWFATEEG-LNKFDGTR----FITYYK-EEQSSSVQSITGNELNEVYTDPVQPV------IWIATQ 85 (781)
T ss_dssp SBEEEEEECTTSC-EEEEESSC-EEEECSSS----EEEECC-CSSCSSSCCCSCSCEEEEEECSSSSE------EEEEES
T ss_pred CEeEEEEECCCCC-EEEccCCc-CccccCCc----eEEEEc-CCCCCccccccccccceEEEcCCCCE------EEEEeC
Confidence 6899999999885 56667777 77777432 111111 111 1346899888777652 555666
Q ss_pred CCeEEEEECCCCeEEEEEee-------cCceEEEEeeec--CCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 87 DGSVSEWDLYDLKQKIVLQS-------IDFSIWQMAVAP--SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
++-+..||..+++....... ....|+++.... ++
T Consensus 86 ~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g------------------------------------- 128 (781)
T 3v9f_A 86 RAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK------------------------------------- 128 (781)
T ss_dssp SSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-------------------------------------
T ss_pred CCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-------------------------------------
Confidence 74599999988764332110 113577776665 55
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC---CccceEEEEEEccCCCEEEEeeCCCcEEEEECCC
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP---RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 234 (817)
.|.+++.++-|..|+..++ .+....... -....|.++...++|.+.+ |+.++-|..||..+
T Consensus 129 --------------~lwi~t~~~gl~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 129 --------------GLWVCTYYRGIEYLDIATG-KFTHYNKSTVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLND 192 (781)
T ss_dssp --------------EEEEEESSSCEEEEETTTT-EEEEESTTTCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTT
T ss_pred --------------CEEEEECCCCeeEEECCCC-eEEeeccCcccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCC
Confidence 6777775566888887643 332111100 1134688888887776554 55565688999877
Q ss_pred CceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee-------cCccCeeEEEEecCCC
Q 003467 235 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-------FHKGDVNALAAAPSHN 307 (817)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~ 307 (817)
++... +.........-....|.++...++|.|..++.. -+.+||..+++...... .....|.++...++|.
T Consensus 193 ~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 270 (781)
T 3v9f_A 193 KSVKH-FVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK 270 (781)
T ss_dssp TEEEE-ECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE
T ss_pred CceEe-eecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC
Confidence 65432 211000000012356888988888877777766 58999988765432211 1245689999888876
Q ss_pred EEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeec----cccCCCccceeEeecccCCCCCCCccccccccCCC
Q 003467 308 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS----VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE 383 (817)
Q Consensus 308 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 383 (817)
|..|+..+-|.+++..+....... ...+..+.. .......|.++... .++
T Consensus 271 -lWigt~~~Gl~~~~~~~~~~~~~~-------~~~f~~~~~~~~~~~l~~~~v~~i~~D---------~~g--------- 324 (781)
T 3v9f_A 271 -LWIATELNGIMILDLQQNQFLLPE-------QIRFEFIREGDNNYSLSNASARYIFQD---------SFN--------- 324 (781)
T ss_dssp -EEEEESSSCEEEEETTCC----------------CEEECBCSSTTSBSSSCEEEEEEC---------SSC---------
T ss_pred -EEEEeCCCCeEEECCCCCeeeeee-------ccccccccCCCCCCCCCCCeEEEEEEe---------CCC---------
Confidence 555666456888887665421000 000000000 11234456666654 333
Q ss_pred CCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCC---CCCCCceeeecceeecCCeEEEE-EeCCeEEE
Q 003467 384 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICP---APQRVPIHLVHNTIFSHTSLLLV-QYSCRLDI 459 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~-~~~~~i~i 459 (817)
.|..|+.++-|..++........ ..... .+.......+.++...+++.+-+ +..+.+..
T Consensus 325 ----------------~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~ 387 (781)
T 3v9f_A 325 ----------------NIWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINV 387 (781)
T ss_dssp ----------------CEEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEE
T ss_pred ----------------CEEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEE
Confidence 57777877888888876432111 10000 01111234566777777665444 43556766
Q ss_pred EEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecC-Cc
Q 003467 460 LSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PR 538 (817)
Q Consensus 460 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~-~~ 538 (817)
++....... ............|.++...++|.+.+....+.+..|+... ... ..... ..
T Consensus 388 ~~~~~~~~~-------------~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~----~~~---~~~~~~~~ 447 (781)
T 3v9f_A 388 FENGKRVAI-------------YNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL----KKF---QIIELEKN 447 (781)
T ss_dssp EETTEEEEE-------------CC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS----CEE---EECCSTTT
T ss_pred EECCCCeEE-------------EccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC----CcE---EEeccCCC
Confidence 664432111 0000001123568888888888877765556666665432 121 11111 11
Q ss_pred cccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEE
Q 003467 539 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY 618 (817)
Q Consensus 539 ~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~ 618 (817)
....|.++...++|...+ |+. +-|..||..+++........ . .......|.+++..++|++.+.....| |.
T Consensus 448 ~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~-~-----~~~~~~~i~~i~~d~~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 448 ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS-N-----SQLLENFVRSIAQDSEGRFWIGTFGGG-VG 518 (781)
T ss_dssp CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT-T-----SSCSCSCEEEEEECTTCCEEEEESSSC-EE
T ss_pred CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc-c-----cccccceeEEEEEcCCCCEEEEEcCCC-EE
Confidence 234688888887776554 555 45999998776544322210 0 001246799999999998666554355 88
Q ss_pred EEECCCcceEEEEe--cCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEE
Q 003467 619 IFNLEIQRQHWFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL 696 (817)
Q Consensus 619 vwd~~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l 696 (817)
.||.++.+...... ......|.++...+ ++. |.+++.+|-|..||..+++...+.... .++ ...|.++
T Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWi~T~~Glv~~~d~~~~~~~~~~~~~--gl~------~~~i~~i 588 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQ-MWLATGEGLVCFPSARNFDYQVFQRKE--GLP------NTHIRAI 588 (781)
T ss_dssp EECTTCCEEEEECTTTTCSCSCEEEEEECT-TSC-EEEEETTEEEEESCTTTCCCEEECGGG--TCS------CCCCCEE
T ss_pred EEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCC-EEEEECCCceEEECCCCCcEEEccccC--CCC------CceEEEE
Confidence 89987765433211 11235788998887 776 455555664488998887754332111 111 2357889
Q ss_pred EECCCCCCCEEEEEcCceEEEEEcC
Q 003467 697 SFSPSPSSSSVIIYSARAMCVIDFG 721 (817)
Q Consensus 697 ~f~p~~~~~~~~~~~~~~~~~~d~~ 721 (817)
..+++|+ +|+.+...++++|..
T Consensus 589 ~~d~~g~---lW~~t~~Gl~~~~~~ 610 (781)
T 3v9f_A 589 SEDKNGN---IWASTNTGISCYITS 610 (781)
T ss_dssp EECSSSC---EEEECSSCEEEEETT
T ss_pred EECCCCC---EEEEcCCceEEEECC
Confidence 9888765 999999999999864
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=5.9e-13 Score=134.29 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=152.6
Q ss_pred CCcEEEEEEeecCC-CCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccc
Q 003467 60 KSRISSLVWCHAGK-MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 60 ~~~V~~l~~s~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
.....+++|+|+++ + ++++..++.|..||..++ ...+..+...+..+++++++
T Consensus 27 ~~~~eg~~~d~~g~~l------~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg------------------ 80 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAV------IFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG------------------ 80 (296)
T ss_dssp CSSEEEEEEEGGGTEE------EEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC------------------
T ss_pred CccccCCeEeCCCCEE------EEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC------------------
Confidence 46788999999997 5 777888899999999987 56666677889999999998
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCE
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNM 217 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~ 217 (817)
+++++...++.|.+||..++....+.....+. ...+..++++|+|++
T Consensus 81 --------------------------------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l 128 (296)
T 3e5z_A 81 --------------------------------HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128 (296)
T ss_dssp --------------------------------CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCE
T ss_pred --------------------------------cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCE
Confidence 35666666789999998656543222111111 235678999999998
Q ss_pred EEE----eeC-------------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEE
Q 003467 218 LYS----GSS-------------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW 279 (817)
Q Consensus 218 l~s----~~~-------------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iw 279 (817)
+++ |+. .+.|..++.. ++ ...+. .+......++|+|++ .+++...++.|.+|
T Consensus 129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~--------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~ 198 (296)
T 3e5z_A 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI--------RDRVKPNGLAFLPSGNLLVSDTGDNATHRY 198 (296)
T ss_dssp EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE--------CCCSSEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee--------cCCCCCccEEECCCCCEEEEeCCCCeEEEE
Confidence 887 331 2456666654 44 33333 345567889999999 46677778899999
Q ss_pred eCC-CCeE---EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCc
Q 003467 280 DSR-HGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD 355 (817)
Q Consensus 280 d~~-~~~~---~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (817)
|+. +++. ...+..+...+..++++++|+.+++. ++.|.+|+.. ++ .+..+..+..
T Consensus 199 ~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~-----------------~~~~~~~~~~- 257 (296)
T 3e5z_A 199 CLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD-----------------ELGRVLTPQT- 257 (296)
T ss_dssp EECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC-----------------EEEEEECSSC-
T ss_pred EECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC-----------------EEEEEECCCC-
Confidence 986 5554 33333355667889999999865555 7899999976 33 4555666666
Q ss_pred cceeEee
Q 003467 356 VRALTVA 362 (817)
Q Consensus 356 v~~l~~~ 362 (817)
+.+++|.
T Consensus 258 ~~~~~f~ 264 (296)
T 3e5z_A 258 TSNLCFG 264 (296)
T ss_dssp CCEEEEE
T ss_pred ceeEEEE
Confidence 8888883
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.9e-11 Score=126.34 Aligned_cols=286 Identities=12% Similarity=-0.012 Sum_probs=179.0
Q ss_pred EEccCCCEEEEeeC--CC---cEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc----------CC
Q 003467 210 TWSADGNMLYSGSS--DG---YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------ST 273 (817)
Q Consensus 210 ~~s~dg~~l~s~~~--dg---~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~----------~d 273 (817)
...|+++++++... .. .|.++|..+++.+.++.. ...+ .++++||| .+..+. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--------g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--------GFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--------CCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 34577777777654 22 889999999998877763 2222 89999999 444443 36
Q ss_pred CcEEEEeCCCCeEEEEeecC-------ccCeeEEEEecCCCEEEEEcc--CCcEEEEEeecccCCCCCCCCCccccceEE
Q 003467 274 GSVQFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWI 344 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 344 (817)
+.|.+||..+++.+..+... ......++|+|||++|+++.. ++.|.++| .+++
T Consensus 97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~----------------- 158 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS----------------- 158 (373)
T ss_pred CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------------
Confidence 78999999998888776532 134568999999999998864 57899999 8776
Q ss_pred Eeec-cccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCC
Q 003467 345 YVGS-VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP 423 (817)
Q Consensus 345 ~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~ 423 (817)
.+.. +.... ++.+. |+++ ..+++.+.||.+.+++. +.+....
T Consensus 159 ~~~~~i~~~~----~~~~~---------~~~~-----------------------~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 159 SDDQLLSSPT----CYHIH---------PGAP-----------------------STFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred EEeEEcCCCc----eEEEE---------eCCC-----------------------ceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3333 22211 12222 3332 35667778888888888 5331100
Q ss_pred cccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCC
Q 003467 424 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG 503 (817)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g 503 (817)
.. .. ..............+++++
T Consensus 202 ~~--------------------------------------~~-------------------~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 202 GL--------------------------------------VG-------------------AMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred Ee--------------------------------------cc-------------------ccccCCcceeecceeEecC
Confidence 00 00 0000000001112344443
Q ss_pred c-EEEEEcCCceEEEEeecCCCCCce---EEEeeec--CCc-cccceeEEEEecCCCEEEEEec----------CCcEEE
Q 003467 504 M-LFAYSDHVKPSLFELKKGKVGQGE---WIINKRQ--LPR-KLQFAHSMIFSYDSSQLIIAGH----------DRRIYV 566 (817)
Q Consensus 504 ~-~la~~~~~~i~l~~~~~~~~~~~~---~~~~~~~--~~~-~~~~i~~~~fspd~~~l~~~~~----------dg~i~v 566 (817)
. ++.++..+.+.+.++.. ....+ |.+.... ... .......++++||+++|+++.. .+.|.+
T Consensus 225 ~~~~~~~~~~~v~vid~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISA--AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CEEEEEcCCceEEEEeccC--CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 3 33334556666666543 11111 1110000 000 0113445789999999888754 357999
Q ss_pred EEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEEEe-CCCcEEEEECCCcceEEEE
Q 003467 567 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFI 631 (817)
Q Consensus 567 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~ 631 (817)
+|+.+++.+.++.. ......++|||||+ +|+++. .++.|.|||+++++....+
T Consensus 303 ID~~t~~vv~~i~~------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 303 VTGLVGQTSSQISL------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCEEEEEEEC------------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999999999874 55689999999999 677776 5899999999999987663
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.5e-12 Score=132.87 Aligned_cols=219 Identities=12% Similarity=0.041 Sum_probs=153.3
Q ss_pred cCCcEEEEecCCCCCCcEEEEEEc----CC-CCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeec
Q 003467 33 EDGSLEIWLVSPGTSGWHCQLTVH----GD-PKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSI 107 (817)
Q Consensus 33 ~dg~i~iwd~~~~~~~~~~~~~~~----g~-~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 107 (817)
.+++|.+||..+++. ...+. +. ......++++. +++. .++...++.|.+||..+++.+.++. .
T Consensus 15 ~~~~l~~~d~~t~~~----~~~i~~~~n~~~lg~~~~~i~~~-~~~l------yv~~~~~~~v~viD~~t~~~~~~i~-~ 82 (328)
T 3dsm_A 15 SNATLSYYDPATCEV----ENEVFYRANGFKLGDVAQSMVIR-DGIG------WIVVNNSHVIFAIDINTFKEVGRIT-G 82 (328)
T ss_dssp CCBEEEEEETTTTEE----ECSHHHHHHSSCCBSCEEEEEEE-TTEE------EEEEGGGTEEEEEETTTCCEEEEEE-C
T ss_pred CCceEEEEECCCCEE----hhhhHhhhcCcccCccceEEEEE-CCEE------EEEEcCCCEEEEEECcccEEEEEcC-C
Confidence 378999999998762 22221 11 12346778774 3332 5555567999999999999988885 4
Q ss_pred CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe-CCCcEEEEE
Q 003467 108 DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC-DDGCVRIYR 186 (817)
Q Consensus 108 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd 186 (817)
......+++++++ .+.++. .++.|.+||
T Consensus 83 ~~~p~~i~~~~~g---------------------------------------------------~lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 83 FTSPRYIHFLSDE---------------------------------------------------KAYVTQIWDYRIFIIN 111 (328)
T ss_dssp CSSEEEEEEEETT---------------------------------------------------EEEEEEBSCSEEEEEE
T ss_pred CCCCcEEEEeCCC---------------------------------------------------eEEEEECCCCeEEEEE
Confidence 5678899999887 444444 789999999
Q ss_pred ecCCCceeEeeccC--CccceEEEEEEccCCCEEEEee--CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 187 ITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGS--SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 187 ~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~s~~--~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
..++........-. ++......+++ . +..|+++. .++.|.++|..+++.+.++... .....++++
T Consensus 112 ~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g---------~~p~~i~~~ 180 (328)
T 3dsm_A 112 PKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG---------IQPTSLVMD 180 (328)
T ss_dssp TTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS---------SCBCCCEEC
T ss_pred CCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC---------CCccceEEc
Confidence 98665442221111 11114456677 3 44555554 4789999999999988888731 234578899
Q ss_pred cCCeEEEEcC-C----------CcEEEEeCCCCeEEEEeecC-ccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 263 RCGTLVSADS-T----------GSVQFWDSRHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 263 ~~~~l~s~~~-d----------g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
++|.++.++. + +.|.++|..+++....+... ......++++|++++|+++.. .|.+||..+++
T Consensus 181 ~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 181 KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence 9996555544 3 68999999999988777543 246889999999999998765 89999987765
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=4.3e-11 Score=120.89 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=167.6
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
.-..+.++++.++|++.++...++.|.+||.. ++. ....+... ...+.++++.+++.. .++...++.|.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---~~~~~~~~-~~~~~~i~~~~~g~l------~v~~~~~~~v~ 86 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---KEFEVPTP-DAKVMCLIVSSLGDI------WFTENGANKIG 86 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---EEEECSST-TCCEEEEEECTTSCE------EEEETTTTEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---EEEECCCC-CCcceeEEECCCCCE------EEEecCCCeEE
Confidence 34688999999999988777678899999987 552 12223322 467999999999875 66655678899
Q ss_pred EEECCCCeEEE-EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 92 EWDLYDLKQKI-VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 92 vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
.+|.. ++... .+......+..+++.+++
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-------------------------------------------------- 115 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLNG-------------------------------------------------- 115 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECSTT--------------------------------------------------
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCCC--------------------------------------------------
Confidence 99988 65432 222234678889998877
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+.++...++.|..|+.. +.... ..+......+.++++.++|++.++...++.|..||. +++... +...
T Consensus 116 ~l~v~~~~~~~i~~~~~~-g~~~~--~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~------ 184 (300)
T 2qc5_A 116 DIWFTQLNGDRIGKLTAD-GTIYE--YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLP------ 184 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS------
T ss_pred CEEEEccCCCeEEEECCC-CCEEE--ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCC------
Confidence 355555557889888876 43321 223334567899999999997776666789999998 665543 3321
Q ss_pred CCceeEEEeEEecCCeEEEE-cCCCcEEEEeCCCCeEEEE-eecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 251 GPELCIWSLLSLRCGTLVSA-DSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.....+..+++.++|.+..+ ...+.|.+||. +++.... +..+...+.+++++++|+..++...++.|..|+.
T Consensus 185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 23456789999999965544 45667999998 4554432 3334567899999999986666656789999987
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=3.2e-12 Score=126.23 Aligned_cols=241 Identities=14% Similarity=0.102 Sum_probs=168.5
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
++.|++++.++.|++||.++++.+ ..+..+. ..+.+++++|+|++|+ +.++.|..||. +|+.+.++..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~---w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~----- 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIV---WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA----- 73 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEE---EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-----
T ss_pred CcEEEeeCCCCEEEEEECCCCeEE---EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-----
Confidence 368999999999999999777766 4555544 4688999999999888 34778999998 8999999884
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcC-CCcEEEEeCCCCeEEEEeec------CccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRHGTLLQAHSF------HKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
+....+.++.++++| .+++.+. ++.|..+|. +|+.+..+.. +......+++.++|+++++...++.|..
T Consensus 74 --~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 74 --PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp --CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred --CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 233568899999999 4555555 677888886 5888777652 2234556788999999999999999999
Q ss_pred EEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcE
Q 003467 321 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM 400 (817)
Q Consensus 321 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (817)
||.. ++ ..|. +..+ ....++... +++. +
T Consensus 151 ~d~~-G~-------------~~w~----~~~~-~~~~~~~~~---------~~g~------------------------~ 178 (276)
T 3no2_A 151 IAPN-GQ-------------LLNS----VKLS-GTPFSSAFL---------DNGD------------------------C 178 (276)
T ss_dssp ECTT-SC-------------EEEE----EECS-SCCCEEEEC---------TTSC------------------------E
T ss_pred ECCC-CC-------------EEEE----EECC-CCccceeEc---------CCCC------------------------E
Confidence 9987 65 2333 3322 223344443 5554 8
Q ss_pred EEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCcc
Q 003467 401 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST 480 (817)
Q Consensus 401 l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~ 480 (817)
++++..++.|..+|..+++ .+|.+...... +
T Consensus 179 ~v~~~~~~~v~~~d~~tG~--------------------------------------~~w~~~~~~~~-------~---- 209 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNR--------------------------------------IVRRVNANDIE-------G---- 209 (276)
T ss_dssp EEECBTTSEEEEECTTTCC--------------------------------------EEEEEEGGGSB-------S----
T ss_pred EEEeCCCCeEEEEeCcCCc--------------------------------------EEEEecCCCCC-------C----
Confidence 8888888889998877544 34555422100 0
Q ss_pred ceeeeeeecCCCCeEEEEecCCCcEEEEEcCC---------ceEEEEeecCCCCCceEEEeeec
Q 003467 481 SLLVQVKSKASRKIICSTISNSGMLFAYSDHV---------KPSLFELKKGKVGQGEWIINKRQ 535 (817)
Q Consensus 481 ~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~---------~i~l~~~~~~~~~~~~~~~~~~~ 535 (817)
..-..+..++..++|.++++...+ ..+++++.. .+..+|.+....
T Consensus 210 --------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~--~g~~~W~~~~~~ 263 (276)
T 3no2_A 210 --------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS--EGKVVWQLNDKV 263 (276)
T ss_dssp --------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT--TSBEEEEECCTT
T ss_pred --------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC--CCCEEEEecCcc
Confidence 001336778888999988886433 446888764 466677765543
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=3.4e-13 Score=154.52 Aligned_cols=240 Identities=16% Similarity=0.124 Sum_probs=162.4
Q ss_pred CceEEEEECCCCCeEEEEecC-----CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 14 SPVVALATSADDSQVAAARED-----GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
..+..++|||||++||.+..+ ..|++||+.+++. ....+. ...+..++|+|| +. |+.++.++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~---~~~~~~---~~~~~~~~wspD-~~------l~~~~~~~ 229 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP---LADELK---WVKFSGLAWLGN-DA------LLYSRFAE 229 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE---EEEEEE---EEESCCCEESTT-SE------EEEEECCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---CCccCC---CceeccEEEECC-CE------EEEEEecC
Confidence 468899999999999987643 3599999999873 122222 122357899999 87 88777654
Q ss_pred e--------------EEEEECCCCeE--EEEEee--cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccc
Q 003467 89 S--------------VSEWDLYDLKQ--KIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 150 (817)
Q Consensus 89 ~--------------i~vwd~~~~~~--~~~~~~--~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (817)
. |.+|++.++.. ...+.. +...+..+.|+|||.
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~----------------------------- 280 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR----------------------------- 280 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-----------------------------
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-----------------------------
Confidence 3 89999987652 223332 233588999999994
Q ss_pred cccCCCCCCccccccccccCCEEEEEeC-----CCcEEEEEecCC--CceeEeeccCCccceEEEEEEccCCCEEEEeeC
Q 003467 151 SESENDSDSDELHEQSVVEDRRVALACD-----DGCVRIYRITDS--DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS 223 (817)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 223 (817)
+|+..+. ...|++||+.++ ..+ +.+..+...+.... +|+|+.|+..+.
T Consensus 281 ---------------------~l~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 281 ---------------------WVVITSSEGTDPVNTVHVARVTNGKIGPV---TALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp ---------------------EEEEEEECTTCSCCEEEEEEEETTEECCC---EEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred ---------------------EEEEEEEccCCCcceEEEEECCCCCCccc---EEecCCCCceEEEE-eccCCEEEEEEC
Confidence 5555553 348999999865 213 33334444444443 489999888776
Q ss_pred C----CcEEEEECCCCc-eEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC-CCeEEEEeecC-ccC
Q 003467 224 D----GYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR-HGTLLQAHSFH-KGD 296 (817)
Q Consensus 224 d----g~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h-~~~ 296 (817)
+ +.|.+||+.++. ....+.. .+...+..+.+..+..+++...++..++|... ++.....+..+ .+.
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~-------~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 408 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVP-------ESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS 408 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEEC-------CCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE
T ss_pred CCCCCCEEEEEeCCCCccccEEEec-------CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE
Confidence 3 459999998752 4444432 34445777888744467888888887776543 46666666653 567
Q ss_pred eeEEEEecCCCEEEEE----ccCCcEEEEEeeccc
Q 003467 297 VNALAAAPSHNRVFST----GSDGQVILYKASCES 327 (817)
Q Consensus 297 v~~l~~s~~~~~l~~~----~~dg~i~iw~~~~~~ 327 (817)
+..++++|+++.|+.. ...++|++||+.+++
T Consensus 409 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 409 ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8899999998866633 335789999987654
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=9.1e-12 Score=128.84 Aligned_cols=282 Identities=11% Similarity=0.039 Sum_probs=184.9
Q ss_pred cCCCEEEEeeCC-----CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc----------CCCcE
Q 003467 213 ADGNMLYSGSSD-----GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD----------STGSV 276 (817)
Q Consensus 213 ~dg~~l~s~~~d-----g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~----------~dg~i 276 (817)
++++++++.... +.|.++|..+++.+.++..+ . .+ .++++||| +++.+. .++.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------F-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------S-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------C-CC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 566766666553 69999999999999999862 2 23 79999999 454443 36789
Q ss_pred EEEeCCCCeEEEEeecC-------ccCeeEEEEecCCCEEEEEcc--CCcEEEEEeecccCCCCCCCCCccccceEEEee
Q 003467 277 QFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 347 (817)
Q Consensus 277 ~iwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (817)
.++|..+++.+.++... ......++|+|||++++++.. ++.|.+.|+.+.+ .+.
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-----------------vv~ 214 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-----------------FDR 214 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-----------------EEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-----------------EEE
Confidence 99999999998887532 234567899999999999864 5789999998877 444
Q ss_pred ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccC
Q 003467 348 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC 427 (817)
Q Consensus 348 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~ 427 (817)
.+..-.. .... |+++ ..+++.+.||.+.+.+....+...
T Consensus 215 ~I~v~g~----~~~~---------p~g~-----------------------~~~v~~~~dG~~~~V~~~~~~v~~----- 253 (426)
T 3c75_H 215 MLDVPDC----YHIF---------PASP-----------------------TVFYMNCRDGSLARVDFADGETKV----- 253 (426)
T ss_dssp EEECCSE----EEEE---------EEET-----------------------TEEEEEETTSSEEEEECCTTCCEE-----
T ss_pred EEEcCCc----eeec---------cCCC-----------------------cEEEEEcCCCCEEEEECCCCcEEE-----
Confidence 4332111 1121 3332 366667778888777773322100
Q ss_pred CCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEE
Q 003467 428 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA 507 (817)
Q Consensus 428 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la 507 (817)
... .++.. ........+.+++++..++
T Consensus 254 ------------------------~~~---~~~~v--------------------------~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 254 ------------------------TNT---EVFHT--------------------------EDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp ------------------------EEC---CCCSC--------------------------TTSCBCSCCEECTTTCEEE
T ss_pred ------------------------Eee---eeecc--------------------------CCCceeeEeeecCCCCEEE
Confidence 000 00000 0001111245677776655
Q ss_pred E-EcCCceEEEEeecCCCCCceEEEeeecCC--------ccccceeEEEEecCCCEEEEEec----------CCcEEEEE
Q 003467 508 Y-SDHVKPSLFELKKGKVGQGEWIINKRQLP--------RKLQFAHSMIFSYDSSQLIIAGH----------DRRIYVVD 568 (817)
Q Consensus 508 ~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~fspd~~~l~~~~~----------dg~i~v~d 568 (817)
+ ...+.+.+.++.. ....+ +....+. ........++|+||++++++... ++.|.++|
T Consensus 281 ~~s~~g~V~ViD~~~--~~~~v--~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 281 WPTYTGKIFQADLTA--EGATF--RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp EEBTTSEEEEEEECS--SCEEE--CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EEeCCCcEEEEeccC--CceEE--eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 5 4556677777643 11111 1111110 00112334789999998887753 34799999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEEEe-CCCcEEEEECCCcceEEEE
Q 003467 569 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFI 631 (817)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-~dg~i~vwd~~~~~~~~~~ 631 (817)
+.+++.+.++.. ......++|+|||+ +|+++. .++.|.|+|+.+++....+
T Consensus 357 ~~T~kvv~~I~v------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 357 AETGERINKIEL------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEEEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEEEC------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999999985 44689999999999 888888 5899999999999988776
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=6.2e-12 Score=127.42 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=191.3
Q ss_pred EEEECCCCCeEEEEec-----CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-------
Q 003467 18 ALATSADDSQVAAARE-----DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS------- 85 (817)
Q Consensus 18 ~la~spdg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~------- 85 (817)
..+..||++++.+... ++.|.+.|..+++ ...+++.. ... . ++++|||++ |++++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~----v~~~I~vG-~~P-~-va~spDG~~------lyVan~~~~r~~ 103 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIGMIDGG-FLP-N-PVVADDGSF------IAHASTVFSRIA 103 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEEEEEEC-SSC-E-EEECTTSSC------EEEEEEEEEETT
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCe----EEEEEECC-CCC-c-EEECCCCCE------EEEEcccccccc
Confidence 3566799999888854 5789999999887 46666654 233 4 999999998 77665
Q ss_pred ---CCCeEEEEECCCCeEEEEEeecC-------ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCC
Q 003467 86 ---IDGSVSEWDLYDLKQKIVLQSID-------FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN 155 (817)
Q Consensus 86 ---~d~~i~vwd~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (817)
.++.|.+||..+++.+.++.... ..-+.++|+|||.
T Consensus 104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk---------------------------------- 149 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---------------------------------- 149 (386)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS----------------------------------
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC----------------------------------
Confidence 36789999999999998886432 2456789999994
Q ss_pred CCCCccccccccccCCEEEEEeC--CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECC
Q 003467 156 DSDSDELHEQSVVEDRRVALACD--DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 233 (817)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 233 (817)
++.++.. ++.|.++|+.+++.+. ++.- .+ . ...+....+.+++.+.||.+.+.++.
T Consensus 150 ----------------~lyVan~~~~~~VsVID~~t~~vv~---tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 150 ----------------TLLFYQFSPAPAVGVVDLEGKAFKR---MLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp ----------------EEEEEECSSSCEEEEEETTTTEEEE---EEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ----------------EEEEEEcCCCCeEEEEECCCCcEEE---EEEC-CC-c-ceeecCCCceeEEECCCCCEEEEECC
Confidence 6666653 6899999998776553 3221 11 1 22344445677888899999999987
Q ss_pred C-CceEEEEEeecCCCCCCCceeEE-EeEEe-cCCeEEEEcCCCcEEEEeCCCCe--EEEEee----------cCccCee
Q 003467 234 L-GYEIYRITVGLGGLGSGPELCIW-SLLSL-RCGTLVSADSTGSVQFWDSRHGT--LLQAHS----------FHKGDVN 298 (817)
Q Consensus 234 ~-g~~~~~~~~~~~~~~~~~~~~v~-~v~~~-~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~----------~h~~~v~ 298 (817)
+ ++....... .. ......+. ...|. ++|+++..+.+|.|.+.|..++. .+..+. .......
T Consensus 208 ~~g~v~~~~~~---~~-~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q 283 (386)
T 3sjl_D 208 TEGTPEITHTE---VF-HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 283 (386)
T ss_dssp SSSCCEEEECC---CC-SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred CCCeEEEeecc---ee-ccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence 6 665432211 00 01112222 23554 78877667778999999997654 333332 0123455
Q ss_pred EEEEecCCCEEEEEcc----------CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCC
Q 003467 299 ALAAAPSHNRVFSTGS----------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE 368 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 368 (817)
.++++++++++++... .+.|.++|+.+.+ .+..+..- ..+.+|+++
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k-----------------v~~~i~vg-~~~~~lavs------ 339 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-----------------RLAKFEMG-HEIDSINVS------ 339 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-----------------EEEEEEEE-EEECEEEEC------
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe-----------------EEEEEECC-CCcceEEEC------
Confidence 6888999999998743 2578899988877 44444322 357788887
Q ss_pred CCCCccccccccCCCCCccccccccccCCCcEEEE-ecCCCeEEEEeCCcccccCCc
Q 003467 369 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS-AGDDTKLFAYCANEFTKFSPH 424 (817)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~~~~~~~~~~~~~~ 424 (817)
+|++ ++|++ ...++.|.++|..+.+.....
T Consensus 340 ---~D~~-----------------------~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 340 ---QDEK-----------------------PLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp ---SSSS-----------------------CEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ---CCCC-----------------------eEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 7774 34544 567999999999987654433
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=2e-12 Score=128.44 Aligned_cols=239 Identities=10% Similarity=-0.007 Sum_probs=161.9
Q ss_pred cEEEEEEeecCCCCCCCceEE-EeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccC
Q 003467 62 RISSLVWCHAGKMGLPGGRLF-SSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
...+++++++|++ ++ +.+.++.|.+||..++........+...+..+++++++
T Consensus 25 ~p~~i~~~~~g~l------~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-------------------- 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNV------YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-------------------- 78 (270)
T ss_dssp CEEEEEECTTCCE------EEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC--------------------
T ss_pred CccceEECCCCCE------EEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC--------------------
Confidence 7889999999875 66 44678899999987655332222233567788888877
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC-CccceEEEEEEccCCCEEE
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~dg~~l~ 219 (817)
.++++ ..++.|.+||..+.. . ..+. .....+.+++++++|++++
T Consensus 79 ------------------------------~l~v~-~~~~~i~~~d~~~~~-~---~~~~~~~~~~p~~i~~~~~g~l~v 123 (270)
T 1rwi_B 79 ------------------------------TVYVT-DFNNRVVTLAAGSNN-Q---TVLPFDGLNYPEGLAVDTQGAVYV 123 (270)
T ss_dssp ------------------------------CEEEE-ETTTEEEEECTTCSC-C---EECCCCSCSSEEEEEECTTCCEEE
T ss_pred ------------------------------CEEEE-cCCCEEEEEeCCCce-E---eeeecCCcCCCcceEECCCCCEEE
Confidence 33444 448899999986433 2 2222 2335789999999999887
Q ss_pred EeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEEEeecCccCee
Q 003467 220 SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN 298 (817)
Q Consensus 220 s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 298 (817)
+...++.|.+|+..+........ .....+..+++.++|. +++...++.|.+||............+...+.
T Consensus 124 ~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 195 (270)
T 1rwi_B 124 ADRGNNRVVKLAAGSKTQTVLPF--------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 195 (270)
T ss_dssp EEGGGTEEEEECTTCCSCEECCC--------CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE
T ss_pred EECCCCEEEEEECCCceeEeecc--------ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce
Confidence 77778899999865544332111 2234567899999885 45555678999999987665444333446788
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCcccccc
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR 378 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 378 (817)
.++++++|..+++...++.|.+|+..+... ......+...+.++++. +++.
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~p~~i~~~---------~~g~--- 246 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-----------------TVLPFTGLNTPLAVAVD---------SDRT--- 246 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCC-----------------EECCCCSCSCEEEEEEC---------TTCC---
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCcc-----------------eeeccCCCCCceeEEEC---------CCCC---
Confidence 999999997666766788999998765431 11112223457778886 6664
Q ss_pred ccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 379 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
++++...++.|.+++.....
T Consensus 247 ---------------------l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 ---------------------VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---------------------EEEEEGGGTEEEEECCCGGG
T ss_pred ---------------------EEEEECCCCEEEEEcCCCcc
Confidence 88999999999999987644
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=3.3e-12 Score=146.34 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=147.8
Q ss_pred CCCCCeEEEEecCCc---EEEEecC-----CCCCCcEEEEE---EcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---
Q 003467 22 SADDSQVAAAREDGS---LEIWLVS-----PGTSGWHCQLT---VHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID--- 87 (817)
Q Consensus 22 spdg~~la~~~~dg~---i~iwd~~-----~~~~~~~~~~~---~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--- 87 (817)
+|||++++....++. -.||-.. .+. +..... +...+...+.+++|||||++ |+.++.+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~lld~~~l~~~~~~~~~~~~~SPDG~~------la~~~~~~G~ 186 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK--GRVLLDPNTWAKDGATALDAWAASDDGRL------LAYSVQDGGS 186 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC--CEEEECGGGCC----EEEEEEEECTTSSE------EEEEEEETTC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC--CEEEECHHHhccCCCEEEEeEEECCCCCE------EEEEEcCCCC
Confidence 489999998765443 5666554 333 212111 11111347899999999987 7776543
Q ss_pred --CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 88 --GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 88 --~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.+|++||+.+|+.+.. ..+...+..++|+|| ..+++.........
T Consensus 187 e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~------------------------------- 233 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEG------------------------------- 233 (741)
T ss_dssp SEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC----------------------------------
T ss_pred ceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccc-------------------------------
Confidence 4699999999987653 222233467899999 64433221110000
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCce-eEeeccCCccceEEEEEEccCCCEEEEeeCCC-----cEEEEECCCC--ce
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLG--YE 237 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~g--~~ 237 (817)
..+-.......|++|++.++..- ........+...+.++.|+|||++|+..+.++ .|.+||+.++ +.
T Consensus 234 -----~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 234 -----QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp ----------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred -----cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 00000011335889998655421 11233334445689999999999998877554 8999999877 31
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC----CCcEEEEeCCCC--eEEEEeecCccCeeEEEEecCCCEEE
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS----TGSVQFWDSRHG--TLLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~----dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
...+.. +...+....+ ++| .|+..+. ++.|.+||+.++ .....+..+...+..++++ ++..++
T Consensus 309 ~~~l~~--------~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~ 378 (741)
T 1yr2_A 309 VTALIP--------DLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFA 378 (741)
T ss_dssp CEEEEC--------SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred cEEecC--------CCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEE
Confidence 455542 3333333333 666 5655544 345999999874 3344444455556677887 566777
Q ss_pred EEccCCcEEEEEee
Q 003467 311 STGSDGQVILYKAS 324 (817)
Q Consensus 311 ~~~~dg~i~iw~~~ 324 (817)
+...|+..++|.+.
T Consensus 379 ~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 379 SYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88889988888776
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=9.4e-11 Score=121.08 Aligned_cols=279 Identities=15% Similarity=0.063 Sum_probs=183.6
Q ss_pred EEECCCCCeEEEEec--CC---cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee--------
Q 003467 19 LATSADDSQVAAARE--DG---SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-------- 85 (817)
Q Consensus 19 la~spdg~~la~~~~--dg---~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-------- 85 (817)
....|+++++.++.. .+ .|.++|..+++ ...+++.. ... .++|+|||++ |+.+.
T Consensus 26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~----~~~~i~~g-~~p--~i~~spDg~~------lyv~n~~~~~~~r 92 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS----ILGHVNGG-FLP--NPVAAHSGSE------FALASTSFSRIAK 92 (373)
T ss_pred ccCCCCCCEEEEeCCcccCCccEEEEEECCCCe----EEEEecCC-CCC--CeEECCCCCE------EEEEecccccccc
Confidence 345688988877653 23 78999999887 45666654 233 9999999998 77775
Q ss_pred --CCCeEEEEECCCCeEEEEEeec-------CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCC
Q 003467 86 --IDGSVSEWDLYDLKQKIVLQSI-------DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND 156 (817)
Q Consensus 86 --~d~~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (817)
.++.|.+||..+++.+..+... +..-..++++|||
T Consensus 93 g~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG------------------------------------ 136 (373)
T 2mad_H 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN------------------------------------ 136 (373)
T ss_pred CCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC------------------------------------
Confidence 3678999999999888776532 1234578999999
Q ss_pred CCCccccccccccCCEEEEEeC--CCcEEEEEecCCCceeEeec-cCCccceEEEEEEccCC-CEEEEeeCCCcEEEEEC
Q 003467 157 SDSDELHEQSVVEDRRVALACD--DGCVRIYRITDSDELIYHRS-LPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDA 232 (817)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~ 232 (817)
++|+++.. ++.|.++| .+++.. .. +.- .+ ++.+.|++ +.+++.+.||.+.++|.
T Consensus 137 --------------~~l~v~n~~~~~~v~viD-~t~~~~---~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 137 --------------ADLLFFQFAAGPAVGLVV-QGGSSD---DQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred --------------CEEEEEecCCCCeEEEEE-CCCCEE---eEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 46666653 57899999 876554 33 321 11 24455665 45567778999999999
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCe--EEEEeecC----------ccCeeE
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT--LLQAHSFH----------KGDVNA 299 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~h----------~~~v~~ 299 (817)
+++.......... ..+.........+.+++ .++..+..+.+.+.|...+. .+..+... ......
T Consensus 195 -~g~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 271 (373)
T 2mad_H 195 -AGGAAGAGLVGAM--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred -CCcEEEEEecccc--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence 8887744331000 00111122334566665 44444467899999987542 22333211 122444
Q ss_pred EEEecCCCEEEEEcc----------CCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCC
Q 003467 300 LAAAPSHNRVFSTGS----------DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 369 (817)
Q Consensus 300 l~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 369 (817)
++++||++.++++.. .+.|.++|..+.+ .+..+.. .....+++++
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~-----------------vv~~i~~-g~~p~~i~~s------- 326 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-----------------TSSQISL-GHDVDAISVA------- 326 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE-----------------EEEEEEC-CCCcCeEEEC-------
Confidence 789999999888653 3579999998876 4555532 2357788887
Q ss_pred CCCccccccccCCCCCccccccccccCCCcEEEEec-CCCeEEEEeCCccccc
Q 003467 370 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKF 421 (817)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~~~~~~~~~~~ 421 (817)
||++ .+++++. .++.|.++|..+.+..
T Consensus 327 --~Dg~-----------------------~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 327 --QDGG-----------------------PDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred --CCCC-----------------------eEEEEEcCCCCeEEEEECCCCCEE
Confidence 7775 2566665 5899999999887644
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=7.1e-12 Score=127.64 Aligned_cols=244 Identities=8% Similarity=-0.030 Sum_probs=162.9
Q ss_pred ccCCCceEEEEECCCCCeEEE-------EecCCcEEEEecCCCCCCcEEEEEEcC----CCCCcEEEEEEeec-CCCCCC
Q 003467 10 DWKPSPVVALATSADDSQVAA-------AREDGSLEIWLVSPGTSGWHCQLTVHG----DPKSRISSLVWCHA-GKMGLP 77 (817)
Q Consensus 10 ~~h~~~I~~la~spdg~~la~-------~~~dg~i~iwd~~~~~~~~~~~~~~~g----~~~~~V~~l~~s~~-~~~~~~ 77 (817)
...-....+++|+++|+++++ +..++.|.+||..+++. . .+.. .+...+.+++++++ ++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----~-~~~~~~~~~~~~~~~~i~~~~~~g~---- 84 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----T-VICKPEVNGYGGIPAGCQCDRDANQ---- 84 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----E-EEECCEETTEECCEEEEEECSSSSE----
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----E-EEEecccCCCCCCCceEEEecCCCc----
Confidence 334456789999999988877 56778999999888762 2 2221 11357899999999 65
Q ss_pred CceEEEeeCCCeEEEEECCCCeEEEE-Eee----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccc
Q 003467 78 GGRLFSSSIDGSVSEWDLYDLKQKIV-LQS----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE 152 (817)
Q Consensus 78 ~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (817)
|..++..+.|.+||.+ ++.... ... ....+..+++++++.
T Consensus 85 ---l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~------------------------------- 129 (314)
T 1pjx_A 85 ---LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN------------------------------- 129 (314)
T ss_dssp ---EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-------------------------------
T ss_pred ---EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-------------------------------
Confidence 4444444579999998 765433 221 124578899988872
Q ss_pred cCCCCCCccccccccccCCEEEEEeCC---------------CcEEEEEecCCCceeEeeccCCccceEEEEEEc----c
Q 003467 153 SENDSDSDELHEQSVVEDRRVALACDD---------------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS----A 213 (817)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s----~ 213 (817)
+.++...+ +.|..|+.. + .+ ..+..+......++|+ |
T Consensus 130 -------------------l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~---~~~~~~~~~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 130 -------------------LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QM---IQVDTAFQFPNGIAVRHMNDG 185 (314)
T ss_dssp -------------------EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CE---EEEEEEESSEEEEEEEECTTS
T ss_pred -------------------EEEEecCcccccccccccccCCCCeEEEECCC-C-CE---EEeccCCCCcceEEEecccCC
Confidence 44443333 455555543 2 32 1222233456889999 9
Q ss_pred CCCEEEEe-eCCCcEEEEECC-CCceEEE-EEeecCCCCCCCc-eeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEE
Q 003467 214 DGNMLYSG-SSDGYIRSWDAK-LGYEIYR-ITVGLGGLGSGPE-LCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQ 288 (817)
Q Consensus 214 dg~~l~s~-~~dg~i~vwd~~-~g~~~~~-~~~~~~~~~~~~~-~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 288 (817)
+++.|+.+ ..++.|.+||.. +++.... ...... .+. ..+..+++.++|.+ ++...++.|.+||.++++.+.
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~ 261 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP----GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM 261 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC----CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEEECC----CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE
Confidence 99766555 457899999986 4542211 111100 222 56788999999965 444467889999998888777
Q ss_pred EeecCccCeeEEEEecCCCEEEEE-ccCCcEEEEEeec
Q 003467 289 AHSFHKGDVNALAAAPSHNRVFST-GSDGQVILYKASC 325 (817)
Q Consensus 289 ~~~~h~~~v~~l~~s~~~~~l~~~-~~dg~i~iw~~~~ 325 (817)
.+..+...+.+++++++++.|+++ ..++.|..|++..
T Consensus 262 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 262 RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 777777889999999999966654 4568899998764
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=1.1e-10 Score=117.29 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=159.6
Q ss_pred eeccCCCceEEEEECCCCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 8 SIDWKPSPVVALATSADDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
.+..+..--.+.+|+|++. ++++...++.|..||..+++. ..+.. ...+.+++++++|++ +++ .
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----~~~~~--~~~~~~i~~~~dG~l------~v~-~- 71 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----QRVTM--DAPVSSVALRQSGGY------VAT-I- 71 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----EEEEC--SSCEEEEEEBTTSSE------EEE-E-
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----EEEeC--CCceEEEEECCCCCE------EEE-E-
Confidence 3455556678999999654 555666788999999988762 22322 357999999999975 554 3
Q ss_pred CCeEEEEECCCCeEEEEEee----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQS----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
++.|.+||..+++....... ....+..++++|+|.
T Consensus 72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~----------------------------------------- 110 (297)
T 3g4e_A 72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR----------------------------------------- 110 (297)
T ss_dssp TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-----------------------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-----------------------------------------
Confidence 56799999998875443332 235688899999983
Q ss_pred cccccccCCEEEEEeC---------CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCcEEEEEC
Q 003467 163 HEQSVVEDRRVALACD---------DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDA 232 (817)
Q Consensus 163 ~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~ 232 (817)
+.++... ...-.||.+.....+ ..+..+......++|+||++.|+.+ +.++.|.+|++
T Consensus 111 ---------l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~ 178 (297)
T 3g4e_A 111 ---------YFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 178 (297)
T ss_dssp ---------EEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred ---------EEEecCCcccccccccCCCcEEEEEECCCCE---EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence 3332211 233456666533333 1222334456889999999977554 55789999987
Q ss_pred --CCCceEEE-EEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe-cCCC
Q 003467 233 --KLGYEIYR-ITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHN 307 (817)
Q Consensus 233 --~~g~~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~ 307 (817)
.+|..... ...... ........+++.++|.| ++....+.|..||..+|+.+..+..+...+++++|. |+++
T Consensus 179 d~~~G~~~~~~~~~~~~----~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 179 DLQTGQISNRRSVYKLE----KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp CTTTCCEEEEEEEEECC----GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred cCCCCcccCcEEEEECC----CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCC
Confidence 56654211 111100 23356788999999954 444556789999999999999998887889999998 8988
Q ss_pred EEEEEccC
Q 003467 308 RVFSTGSD 315 (817)
Q Consensus 308 ~l~~~~~d 315 (817)
.|++++..
T Consensus 255 ~L~vt~~~ 262 (297)
T 3g4e_A 255 EMYVTCAR 262 (297)
T ss_dssp EEEEEEBC
T ss_pred EEEEEcCC
Confidence 88776543
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=5.8e-10 Score=112.46 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=82.9
Q ss_pred ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEE-EEcCCCcEEEEe
Q 003467 202 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV-SADSTGSVQFWD 280 (817)
Q Consensus 202 h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~-s~~~dg~i~iwd 280 (817)
....+.++++.++|+..++...++.|.+||.. ++.. .+... .....+..+++.+++.+. +...++.|..+|
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVP------TPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECC------CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 34578899999999988877778999999987 5543 33321 234678899999999654 444578899999
Q ss_pred CCCCeEEE-EeecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 281 SRHGTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 281 ~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.. ++... .+......+..++++++++.+++...++.|..|+..
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 88 65432 222234678999999999877776667788888765
No 212
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=3.8e-10 Score=117.96 Aligned_cols=321 Identities=15% Similarity=0.182 Sum_probs=191.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCC-CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 214 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG-SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 214 dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
++..|++++.++.|..+|..+|+.+.+......... ......+.+.....++.++.++.++.|..+|.++|+.+.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 357788888899999999999999888774211000 0002233333334577888899999999999999999887765
Q ss_pred CccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCC-ccceeEeecccCCCCCC
Q 003467 293 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH-DVRALTVAVPISREDPL 371 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~ 371 (817)
........... +..+++++.++.|..+|..+++ ..|........... .......
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~-------------~~W~~~~~~~~~~~~~~~~~~~---------- 186 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGA-------------VKWTVNLDMPSLSLRGESAPTT---------- 186 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCC-------------EEEEEECCC-----CCCCCCEE----------
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCc-------------EEEEEeCCCCceeecCCCCcEE----------
Confidence 44333333333 4478888899999999998876 23432211000000 0011111
Q ss_pred CccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEE
Q 003467 372 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV 451 (817)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 451 (817)
. ...++.+..++.+..+|..+.+.
T Consensus 187 ~-------------------------~~~v~~g~~~g~l~~~d~~tG~~------------------------------- 210 (376)
T 3q7m_A 187 A-------------------------FGAAVVGGDNGRVSAVLMEQGQM------------------------------- 210 (376)
T ss_dssp E-------------------------TTEEEECCTTTEEEEEETTTCCE-------------------------------
T ss_pred E-------------------------CCEEEEEcCCCEEEEEECCCCcE-------------------------------
Confidence 1 12677888899999999876441
Q ss_pred EeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEE
Q 003467 452 QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWII 531 (817)
Q Consensus 452 ~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~ 531 (817)
+|........ +.. .+..+.......+ + .++.+++.+.++.+..++... +..+|..
T Consensus 211 -------~w~~~~~~~~-------~~~---~~~~~~~~~~~p~----~-~~~~v~~~~~~g~l~~~d~~t---G~~~w~~ 265 (376)
T 3q7m_A 211 -------IWQQRISQAT-------GST---EIDRLSDVDTTPV----V-VNGVVFALAYNGNLTALDLRS---GQIMWKR 265 (376)
T ss_dssp -------EEEEECCC---------------------CCCCCCE----E-ETTEEEEECTTSCEEEEETTT---CCEEEEE
T ss_pred -------EEEEecccCC-------CCc---ccccccccCCCcE----E-ECCEEEEEecCcEEEEEECCC---CcEEeec
Confidence 2332211100 000 0000000000001 1 134444545677777777654 5666654
Q ss_pred eeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 532 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 532 ~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
.. . ....+.. ++..|++++.++.|..+|..+++.+...... ....+..... .+..|+++
T Consensus 266 ~~---~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------~~~~~~~~~~--~~~~l~v~ 324 (376)
T 3q7m_A 266 EL---G----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------LHRLLTSPVL--YNGNLVVG 324 (376)
T ss_dssp CC---C----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT----------TTSCCCCCEE--ETTEEEEE
T ss_pred cC---C----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc----------CCCcccCCEE--ECCEEEEE
Confidence 31 1 2233333 5778888888999999999999987766521 1122223333 35688899
Q ss_pred eCCCcEEEEECCCcceEEEEecCCCCCeE-EEEecCCCCCeEEEEecCCeEEEEE
Q 003467 612 NCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFD 665 (817)
Q Consensus 612 ~~dg~i~vwd~~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~l~~~~~d~~i~vwd 665 (817)
+.+|.|+++|.++++..+....... .+. .... .+..|++++.+|.|+.|+
T Consensus 325 ~~~g~l~~~d~~tG~~~~~~~~~~~-~~~~~~~~---~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRFVAQQKVDSS-GFQTEPVA---ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCTT-CBCSCCEE---ETTEEEEEBTTSCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEecCCC-cceeCCEE---ECCEEEEEeCCCEEEEEe
Confidence 9999999999999999887765332 222 2222 245788999999999987
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=6.4e-11 Score=120.50 Aligned_cols=241 Identities=10% Similarity=0.087 Sum_probs=162.3
Q ss_pred CCcEEEEEEeecCCCCCCCceEEE-------eeCCCeEEEEECCCCeEEEEEe----ecCceEEEEeeecC-CCccceee
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFS-------SSIDGSVSEWDLYDLKQKIVLQ----SIDFSIWQMAVAPS-NSSLMHAV 127 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~----~~~~~i~~~~~s~~-~~~~~~~~ 127 (817)
-....+++|++++.. +++ ...++.|.+||..+++...... ++...+..++++++ +
T Consensus 17 ~~~~~~~~~~~~g~l------~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g------- 83 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDF------YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN------- 83 (314)
T ss_dssp CTTCEEEEECTTSCE------EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-------
T ss_pred CCCccCceECCCCCE------EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-------
Confidence 346789999998875 666 5678899999998887643222 14466889999998 6
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeE-eeccCC-ccce
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY-HRSLPR-VSGR 205 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-h~~~ 205 (817)
.|.+++..+.|.+||.. +..... ...... ....
T Consensus 84 --------------------------------------------~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 118 (314)
T 1pjx_A 84 --------------------------------------------QLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQG 118 (314)
T ss_dssp --------------------------------------------EEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBC
T ss_pred --------------------------------------------cEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccC
Confidence 55555555578899986 433211 111111 2245
Q ss_pred EEEEEEccCCCEEEEeeCC---------------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe----cCC-
Q 003467 206 VLSVTWSADGNMLYSGSSD---------------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL----RCG- 265 (817)
Q Consensus 206 v~~v~~s~dg~~l~s~~~d---------------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~- 265 (817)
+.+++++++|++.++...+ +.|..||.. ++...... .......++++ +++
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~---------~~~~~~~i~~~~~~d~dg~ 188 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---------AFQFPNGIAVRHMNDGRPY 188 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE---------EESSEEEEEEEECTTSCEE
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc---------CCCCcceEEEecccCCCCC
Confidence 8899999999988777655 567777765 55433322 22345788999 998
Q ss_pred eE-EEEcCCCcEEEEeCC-CCe-----EEEEeecCc-cCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCc
Q 003467 266 TL-VSADSTGSVQFWDSR-HGT-----LLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 337 (817)
Q Consensus 266 ~l-~s~~~dg~i~iwd~~-~~~-----~~~~~~~h~-~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 337 (817)
.+ ++...++.|.+||.. +++ ....+..+. ..+..++++++|+.+++...++.|.+|+..+++
T Consensus 189 ~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---------- 258 (314)
T 1pjx_A 189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------- 258 (314)
T ss_dssp EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS----------
T ss_pred EEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc----------
Confidence 44 444567899999976 454 223334343 567889999999877777678899999987544
Q ss_pred cccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCc
Q 003467 338 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 417 (817)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~ 417 (817)
.+..+..+...+.++++. ++++ .++++...++.|..|++..
T Consensus 259 -------~~~~~~~~~~~~~~i~~~---------~dg~-----------------------~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 259 -------PKMRIRCPFEKPSNLHFK---------PQTK-----------------------TIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -------CSEEEECSSSCEEEEEEC---------TTSS-----------------------EEEEEETTTTEEEEEECSS
T ss_pred -------EeEEEeCCCCCceeEEEC---------CCCC-----------------------EEEEEeCCCCeEEEEeCCC
Confidence 223334455678888886 6664 1455556678999998864
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.7e-10 Score=119.31 Aligned_cols=273 Identities=10% Similarity=0.005 Sum_probs=170.5
Q ss_pred CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc----------cCCcEEEEEeecccCCCCCCCCCccccceE
Q 003467 274 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPNDGLSSSEVIKKW 343 (817)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 343 (817)
+.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.++|..+.+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~---------------- 160 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL---------------- 160 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC----------------
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc----------------
Confidence 78999999999999999865555 899999999999875 36789999998876
Q ss_pred EEeeccccC-------CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC--CCeEEEEe
Q 003467 344 IYVGSVRAH-------THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD--DTKLFAYC 414 (817)
Q Consensus 344 ~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~~~~ 414 (817)
.+..+..- ......++++ ||++ +|+.+.. ++.|.+.|
T Consensus 161 -vv~~I~v~g~~r~~~g~~P~~~~~s---------pDGk------------------------~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 161 -PIADIELPDAPRFLVGTYQWMNALT---------PDNK------------------------NLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp -EEEEEEETTCCCCCBSCCGGGSEEC---------TTSS------------------------EEEEEECSSSCEEEEEE
T ss_pred -EEEEEECCCccccccCCCcceEEEc---------CCCC------------------------EEEEEecCCCCeEEEEE
Confidence 34333221 2345567776 8886 6666553 57899999
Q ss_pred CCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCe
Q 003467 415 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI 494 (817)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i 494 (817)
+.+.+....... +. ...+. .. ..-
T Consensus 207 ~~t~kvv~~I~v------------------~g---------~~~~~---------------------------p~--g~~ 230 (426)
T 3c75_H 207 LEGKTFDRMLDV------------------PD---------CYHIF---------------------------PA--SPT 230 (426)
T ss_dssp TTTTEEEEEEEC------------------CS---------EEEEE---------------------------EE--ETT
T ss_pred CCCCeEEEEEEc------------------CC---------ceeec---------------------------cC--CCc
Confidence 887542211100 00 00000 00 001
Q ss_pred EEEEecCCCcEEEEEc-CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCc
Q 003467 495 ICSTISNSGMLFAYSD-HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE 573 (817)
Q Consensus 495 ~~~~~s~~g~~la~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~ 573 (817)
.-+++++||+++.+.. .+++.. .. . .. ..... ..-...+.|++++..++..+..+.|++.|+.+..
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~-~~-~-----~~-----~~v~~-~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKV-TN-T-----EV-----FHTED-ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEE-EE-C-----CC-----CSCTT-SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred EEEEEcCCCCEEEEECCCCcEEE-Ee-e-----ee-----eccCC-CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 2234556666655532 222221 00 0 00 00000 1112245689999998888889999999986543
Q ss_pred e--eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC----------CCcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 574 L--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------FGDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 574 ~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
. +..+..... ..............++++||+++|.++.. ++.|.++|+.+.+....++... .+..
T Consensus 298 ~~v~~~~~~~~~-~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~g 374 (426)
T 3c75_H 298 ATFRAPIEALTE-AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDS 374 (426)
T ss_dssp EEECCCEESSCT-TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECE
T ss_pred eEEeeeeeeccc-cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCe
Confidence 2 222211000 00000000112224689999998877753 3579999999999888886543 6899
Q ss_pred EEecCCCCC-eEEEEe-cCCeEEEEEcCCCcc
Q 003467 642 AGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL 671 (817)
Q Consensus 642 l~~sp~d~~-~l~~~~-~d~~i~vwd~~~~~~ 671 (817)
++|+| |++ +|+++. .++.|.++|+.+++.
T Consensus 375 ia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 375 INVSQ-DAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEECC-SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 99999 988 888888 589999999999986
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.41 E-value=6e-11 Score=124.52 Aligned_cols=243 Identities=8% Similarity=-0.014 Sum_probs=162.0
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC--eEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG--SVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~--~i~ 91 (817)
.....|+++|+|+++++...++.|++||..++. +....... .... ++|+++++. |+++..++ .|.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~----~~~~~~~~--~~~~-ia~~~~g~~------l~~~d~~~~~~I~ 197 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK----VTTVHPGF--KGGK-PAVTKDKQR------VYSIGWEGTHTVY 197 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE----EEEEEETC--CBCB-CEECTTSSE------EEEEBSSTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE----EEEeeccC--CCCc-eeEecCCCc------EEEEecCCCceEE
Confidence 467899999999988887778999999998775 23333332 2333 999999987 88887765 899
Q ss_pred EEECCCCeEEEEE----eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 92 EWDLYDLKQKIVL----QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 92 vwd~~~~~~~~~~----~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
+|+..++.....+ .......++++++|++
T Consensus 198 ~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~----------------------------------------------- 230 (409)
T 3hrp_A 198 VYMKASGWAPTRIGQLGSTFSGKIGAVALDETE----------------------------------------------- 230 (409)
T ss_dssp EEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS-----------------------------------------------
T ss_pred EEEcCCCceeEEeeeccchhcCCcEEEEEeCCC-----------------------------------------------
Confidence 9998776554444 2144567788888843
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEeec--cCCccceE--EEEEEccC-CCEEEEeeCCCcEEEEECCCCceEEEEE
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYHRS--LPRVSGRV--LSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRIT 242 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v--~~v~~s~d-g~~l~s~~~dg~i~vwd~~~g~~~~~~~ 242 (817)
..|.++..++.|+.||..++... .... ..++.+.- ..++|+|+ +.++++-..++.|+.|+.. +. +..+.
T Consensus 231 ---g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~-~~~~~ 304 (409)
T 3hrp_A 231 ---EWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GE-CEWFC 304 (409)
T ss_dssp ---SEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT-CC-EEEEE
T ss_pred ---CeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC-CC-EEEEE
Confidence 15555777889999998755432 1111 22222222 28999995 5555555667899999975 43 33332
Q ss_pred eecCCCCC-------CCceeEEEeEEecCCe-EEEEc-CCCcEEEEeCCCCeEEEEeecC---------------ccCee
Q 003467 243 VGLGGLGS-------GPELCIWSLLSLRCGT-LVSAD-STGSVQFWDSRHGTLLQAHSFH---------------KGDVN 298 (817)
Q Consensus 243 ~~~~~~~~-------~~~~~v~~v~~~~~~~-l~s~~-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~ 298 (817)
........ ..-.....+++.++|. +++-. .++.|+.||..++.. .++.++ -....
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCce
Confidence 11000000 0123478999999995 45555 688899999877764 444443 24578
Q ss_pred EEEEecCCCEEEEEccCCcEEEEEe
Q 003467 299 ALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 299 ~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.+++++++..+++-..++.|+.+++
T Consensus 384 giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 384 DICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9999999877777777888888765
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=8.1e-12 Score=127.24 Aligned_cols=182 Identities=12% Similarity=0.059 Sum_probs=133.3
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCC-------CCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGT-------SGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
..++.|++++...++|+|+.++ +.||++...+ .......... . .. |+.|+| |+.+ |+++ .
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-l-p~-V~~l~f--d~~~------L~v~-~ 104 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-I-PD-VIFVCF--HGDQ------VLVS-T 104 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-C-TT-EEEEEE--ETTE------EEEE-E
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-C-CC-eeEEEE--CCCE------EEEE-c
Confidence 3699999999999999999875 7779875332 0001112222 3 34 999999 8877 8888 8
Q ss_pred CCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
++.|.+||+.+.........|..++.++.+.+
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~------------------------------------------------ 136 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNVN------------------------------------------------ 136 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEECSSCEEEEEECS------------------------------------------------
T ss_pred CCcEEEEEchhhhccCccceeecceeeEEecC------------------------------------------------
Confidence 89999999988776667777777777665543
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCce--EEEEEee
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE--IYRITVG 244 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~--~~~~~~~ 244 (817)
+.+++++.||.|.+||+.++... . +...|+|++|||+| ++.|..||++++|+...++. ..++..+
T Consensus 137 ----p~~av~~~dG~L~v~dl~~~~~~---~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 137 ----NTLVILNSVNDLSALDLRTKSTK---Q----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp ----SEEEEEETTSEEEEEETTTCCEE---E----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred ----CCEEEEECCCCEEEEEccCCccc---c----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 24888899999999999855442 1 45689999999999 78899999999999877665 4555321
Q ss_pred cCC-CCCCCceeEEEeEEecCCeEEE
Q 003467 245 LGG-LGSGPELCIWSLLSLRCGTLVS 269 (817)
Q Consensus 245 ~~~-~~~~~~~~v~~v~~~~~~~l~s 269 (817)
..- ...++...|.++.|++++.++.
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEE
Confidence 100 0013678999999999985443
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=5e-11 Score=133.77 Aligned_cols=394 Identities=12% Similarity=0.086 Sum_probs=207.3
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-------ceE-EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-------GRV-LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v-~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
+..+++++.++.|+-+|..+++.+-....-.... ..+ ..++. ++..|++++.|+.|..+|..+|+.+.+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4578888889999999998887763221110000 000 11222 3568888999999999999999999888
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEc------CCCcEEEEeCCCCeEEEEeecCc---------------------
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSAD------STGSVQFWDSRHGTLLQAHSFHK--------------------- 294 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~h~--------------------- 294 (817)
...... .....+.+.-...++.++.+. .+|.|..||.++|+.+.++....
T Consensus 148 ~~~~~~---~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 148 DTRADH---KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp ECCSCT---TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCcCCC---CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 742000 000111111111266666554 36899999999999988775210
Q ss_pred ----------cCeeEEEEecCCCEEEEEccCCc-------------------EEEEEeecccCCCCCCCCCccccceEEE
Q 003467 295 ----------GDVNALAAAPSHNRVFSTGSDGQ-------------------VILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 295 ----------~~v~~l~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
.....++++|++..++.+..++. |..+|..+++ ..|..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~-------------~~W~~ 291 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE-------------YVWHY 291 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC-------------EEEEE
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc-------------eeEee
Confidence 01125789999899999887764 8899998887 34533
Q ss_pred eeccccCCC---ccc-eeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccccc
Q 003467 346 VGSVRAHTH---DVR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF 421 (817)
Q Consensus 346 ~~~~~~h~~---~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~ 421 (817)
.. ..|.. ++. .+.+. .+. .+++ ..+.++.++.+|.++++|..+.+.+
T Consensus 292 ~~--~~~d~wd~~~~~~~~l~-d~~-----~~G~---------------------~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 292 QT--TPGDAWDYTATQHMILA-ELP-----IDGK---------------------PRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp ES--STTCCSCCCCCSCEEEE-EEE-----ETTE---------------------EEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ec--CCcccccccCCCCcEEE-eec-----cCCc---------------------EEEEEEEECCCCeEEEEECCCCCEe
Confidence 21 11210 010 01110 000 1111 1137889999999999999887644
Q ss_pred CCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecC
Q 003467 422 SPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN 501 (817)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~ 501 (817)
........+- ...+.. ..+.-+...... |... .+. . .+..-..........++++|
T Consensus 343 ~~~~~~~~~w------~~~~~~-~~~~pi~~~~~~---~~~~-----------~~~--~-~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 343 SAKGIVPQSW------TKGMDM-KTGRPILDEENA---AYWK-----------NGK--R-NLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEESSCCSS------EEEEET-TTTEEEECHHHH---CTTT-----------SSS--C-EEESSCTTCSSCSSCCEEET
T ss_pred cccccccccc------ccccCc-cCCCcccchhhc---cccC-----------CCC--e-eEeCCCcccccCCCcceECC
Confidence 3222111000 000000 000000000000 0000 000 0 00000011112334578899
Q ss_pred CCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccc-cceeEEEEecC---CCEEEEEecCCcEEEEEccCCceeee
Q 003467 502 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAHSMIFSYD---SSQLIIAGHDRRIYVVDVSSSELLHT 577 (817)
Q Consensus 502 ~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~fspd---~~~l~~~~~dg~i~v~d~~~~~~~~~ 577 (817)
+..++.+........+...... ..+.. -.... .... +...|. +........+|.|+.||+.+|+.+..
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~---~~~~~----~~~~~~~g~~-~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 470 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEA---PKRNP----FKSMYQLGLR-TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWE 470 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSC---CCCCS----CTTSCCCSSE-ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEeccccceeeeecccc---ccccc----cccccccCcc-ccccCcccccCCCCCCCcceeEEEEECCCCCeEeE
Confidence 8887777544332233222100 00000 00000 0000 000000 00000001248899999999999888
Q ss_pred eccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCC-eEEEE
Q 003467 578 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN-VLIIT 655 (817)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~l~~~ 655 (817)
++. ...+..-.++..+.++++++.||.|+.||.++++.+|.+....+....-+.|.. +++ ++++.
T Consensus 471 ~~~------------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~-~G~qyv~~~ 536 (689)
T 1yiq_A 471 VPY------------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV-DGEQYVTFM 536 (689)
T ss_dssp EEE------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEEEEE
T ss_pred ccC------------CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE-CCEEEEEEE
Confidence 774 222333356668889999999999999999999999998766543334567777 665 44444
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.39 E-value=6.9e-11 Score=132.37 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=90.9
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc--------ceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS--------GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--------~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
+..+++++.++.|+-+|..+++.+-....-.... .....+++ ++..|++++.|+.|..+|..+|+.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 3578888888999999998877663221111000 00112333 4678888999999999999999999988
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEcC------CCcEEEEeCCCCeEEEEeecCccC-------------------
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHSFHKGD------------------- 296 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~------------------- 296 (817)
...... .....+.+.-...++.++.++. +|.|..+|..+|+.+.++......
T Consensus 155 ~~~~~~---~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQ---KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTC---CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCc---CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 742000 0001121111123566666553 689999999999999887643221
Q ss_pred -------------eeEEEEecCCCEEEEEccCC
Q 003467 297 -------------VNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 297 -------------v~~l~~s~~~~~l~~~~~dg 316 (817)
...++++|++..|+.+..++
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~ 264 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNG 264 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCC
Confidence 13578888888888887664
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=3.4e-10 Score=115.27 Aligned_cols=228 Identities=14% Similarity=0.003 Sum_probs=149.6
Q ss_pred CCceEEEEECCCCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEE
Q 003467 13 PSPVVALATSADDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVS 91 (817)
Q Consensus 13 ~~~I~~la~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~ 91 (817)
.....+.+|+|++. ++++...++.|.+||..+++ ...+.. ...+.+++|+++|++ +++ +.+ .|.
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-----~~~~~~--~~~v~~i~~~~dg~l------~v~-~~~-gl~ 112 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGR-----KTVHAL--PFMGSALAKISDSKQ------LIA-SDD-GLF 112 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-----EEEEEC--SSCEEEEEEEETTEE------EEE-ETT-EEE
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-----EEEEEC--CCcceEEEEeCCCeE------EEE-ECC-CEE
Confidence 34567899999855 55566667899999998765 222322 357999999999875 554 444 499
Q ss_pred EEECCCCeEEEEEee----cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 92 EWDLYDLKQKIVLQS----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 92 vwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
+||..+++....... ....+..++++|+|.
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---------------------------------------------- 146 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---------------------------------------------- 146 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----------------------------------------------
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----------------------------------------------
Confidence 999988875433221 124688999999883
Q ss_pred ccCCEEEEEeCC----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCcEEEEECC--CC-ceE-
Q 003467 168 VEDRRVALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAK--LG-YEI- 238 (817)
Q Consensus 168 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~--~g-~~~- 238 (817)
++++...+ +...||.+.+ ..+. .+..+......++|+|||+.|+.+ +.++.|.+|++. +| ...
T Consensus 147 ----l~v~~~~~~~~~~~~~l~~~~~-g~~~---~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 147 ----LWIGTMGRKAETGAGSIYHVAK-GKVT---KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp ----EEEEEEETTCCTTCEEEEEEET-TEEE---EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred ----EEEEeCCCcCCCCceEEEEEeC-CcEE---EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 33322211 2234444432 3332 222233456789999999977655 456899999986 56 321
Q ss_pred -EEEEeecCCCCCCCceeEEEeEEecCCeEEEE-cCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe-cCCCEEEEEccC
Q 003467 239 -YRITVGLGGLGSGPELCIWSLLSLRCGTLVSA-DSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFSTGSD 315 (817)
Q Consensus 239 -~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~~~~~d 315 (817)
..+.. .. ........+++.++|.+..+ ..++.|..||. +++.+..+..+...+.+++|+ ++++.|++++..
T Consensus 219 ~~~~~~-~~----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 219 AEVFID-ST----GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEE-CT----TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ceEEEE-CC----CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 12211 00 23345678999999965444 45678999998 578888887777789999998 888887766543
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.1e-10 Score=117.95 Aligned_cols=232 Identities=15% Similarity=0.032 Sum_probs=152.7
Q ss_pred eeccCCCceEEEEECCCCC-eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC
Q 003467 8 SIDWKPSPVVALATSADDS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI 86 (817)
Q Consensus 8 ~~~~h~~~I~~la~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~ 86 (817)
-+..........+|+|+|+ +++++..++.|..|+. +++ ...+..+ ...+.+++++++|++ +++...
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-----~~~~~~~-~~~~~gl~~d~dG~l------~v~~~~ 105 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-----VDVLLDA-TAFTNGNAVDAQQRL------VHCEHG 105 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-----EEEEEES-CSCEEEEEECTTSCE------EEEETT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-----EEEEeCC-CCccceeeECCCCCE------EEEECC
Confidence 3444556778899999999 5566667889999998 444 1222222 467899999999875 555555
Q ss_pred CCeEEEEECCCCeEEEEEeecC----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccc
Q 003467 87 DGSVSEWDLYDLKQKIVLQSID----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL 162 (817)
Q Consensus 87 d~~i~vwd~~~~~~~~~~~~~~----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (817)
++.|.+|+.+ ++......... ..+..+++.++|.
T Consensus 106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~----------------------------------------- 143 (305)
T 3dr2_A 106 RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA----------------------------------------- 143 (305)
T ss_dssp TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-----------------------------------------
T ss_pred CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-----------------------------------------
Confidence 6789999986 65433222111 2356788888883
Q ss_pred cccccccCCEEEE----Ee-------------CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-
Q 003467 163 HEQSVVEDRRVAL----AC-------------DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD- 224 (817)
Q Consensus 163 ~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d- 224 (817)
+.++ |. ..+.|+.||..++.... +. .......++|+||++.|+.+...
T Consensus 144 ---------l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~----~~-~~~~p~gl~~spdg~~lyv~~~~~ 209 (305)
T 3dr2_A 144 ---------IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR----MA-DLDHPNGLAFSPDEQTLYVSQTPE 209 (305)
T ss_dssp ---------EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----EE-EESSEEEEEECTTSSEEEEEECCC
T ss_pred ---------EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----Ee-cCCCCcceEEcCCCCEEEEEecCC
Confidence 3332 21 12456666664443321 11 33456789999999988877665
Q ss_pred -----CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeE
Q 003467 225 -----GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA 299 (817)
Q Consensus 225 -----g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 299 (817)
+.|.+|++..+. +........ ........+++.++|.|.+++.+| |.+|+.. ++.+..+..+. .+.+
T Consensus 210 ~~~~~~~i~~~~~~~~~-l~~~~~~~~----~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~-g~~~~~~~~~~-~~~~ 281 (305)
T 3dr2_A 210 QGHGSVEITAFAWRDGA-LHDRRHFAS----VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSD-GQLLGHIPTPG-TASN 281 (305)
T ss_dssp ---CCCEEEEEEEETTE-EEEEEEEEC----CSSSCCCSEEECTTSCEEECCSSE-EEEECTT-SCEEEEEECSS-CCCE
T ss_pred cCCCCCEEEEEEecCCC-ccCCeEEEE----CCCCCCCeEEECCCCCEEEecCCc-EEEECCC-CCEEEEEECCC-ceeE
Confidence 689999987654 221111000 112334567888999877776554 9999984 77887777655 5889
Q ss_pred EEEecCCCEEEEEccCC
Q 003467 300 LAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 300 l~~s~~~~~l~~~~~dg 316 (817)
++|+++++.|+.++.++
T Consensus 282 ~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECTTSCEEEEEETTE
T ss_pred EEEeCCCCEEEEEcCCe
Confidence 99999999999887764
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=1.5e-11 Score=139.49 Aligned_cols=240 Identities=12% Similarity=0.087 Sum_probs=155.4
Q ss_pred cCCCceEEEEECCCCCeEEEEe-----cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 11 WKPSPVVALATSADDSQVAAAR-----EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 11 ~h~~~I~~la~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.|...+..++|||||++||.+. .+.+|+|||+.+++. ....+.+. ...+++|+ ||+. |+.++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~~~~~~~---k~~~~~Ws-Dg~~------l~y~~ 192 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LETPLKDV---KFSGISWL-GNEG------FFYSS 192 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EEEEEEEE---ESCCCEEE-TTTE------EEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---CccccCCc---eeccEEEe-CCCE------EEEEE
Confidence 3556789999999999999643 235799999999873 22233321 23578899 9987 88887
Q ss_pred CCC-------------eEEEEECCCCeE----EEEEee-cCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCC
Q 003467 86 IDG-------------SVSEWDLYDLKQ----KIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD 147 (817)
Q Consensus 86 ~d~-------------~i~vwd~~~~~~----~~~~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (817)
.+. .|.+|++.++.. +..... |...+..+.++||+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l------------------------ 248 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL------------------------ 248 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE------------------------
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE------------------------
Confidence 764 399999987642 222223 34457789999999542
Q ss_pred ccccccCCCCCCccccccccccCCEEEEEe---CCCcEEEEEecCCC-ceeEeeccCCccceEEEEEEccCCCEEEEeeC
Q 003467 148 HETSESENDSDSDELHEQSVVEDRRVALAC---DDGCVRIYRITDSD-ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS 223 (817)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 223 (817)
+++.. ....|+++|+.++. .+ +.+..+....... |+++|..|+..+.
T Consensus 249 -------------------------~~~~~~~~~~~~i~~~d~~~~~~~~---~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 249 -------------------------LISAANSTSGNRLYVKDLSQENAPL---LTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp -------------------------EEEEESSSSCCEEEEEETTSTTCCC---EEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred -------------------------EEEEccCCCCcEEEEEECCCCCCce---EEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 22222 23589999987553 33 3444455555454 6677776665443
Q ss_pred -C---CcEEEEECCCCce--EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEE-cCCC--cEEEEeCCCCeEEEEeec-
Q 003467 224 -D---GYIRSWDAKLGYE--IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTG--SVQFWDSRHGTLLQAHSF- 292 (817)
Q Consensus 224 -d---g~i~vwd~~~g~~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~-~~dg--~i~iwd~~~~~~~~~~~~- 292 (817)
+ +.|.++|+.++.. ...+. .+...+. .|++++ .|+.. ..++ .|.+||+..+ ....+..
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~~~~l~--------~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p 368 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAHWRDLI--------PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP 368 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEE--------CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS
T ss_pred CCCCCCEEEEEeCCCCCccccEEEe--------cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC
Confidence 2 6799999987754 34444 2333333 777777 45444 3444 5899998844 4444432
Q ss_pred CccCeeEEEEecCCCEEEEEccC----CcEEEEEeeccc
Q 003467 293 HKGDVNALAAAPSHNRVFSTGSD----GQVILYKASCES 327 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 327 (817)
..+.+..+.++++++.++....+ +++..||+.+++
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 34567778888888877765544 788888876654
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=3.6e-09 Score=110.56 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=148.1
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcC----CCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHG----DPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK 99 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g----~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 99 (817)
++..|.+++.++.|..+|..+++..|.....-.. .....+.+... .++. +++.++.++.|..+|..+|+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGG------HVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EETT------EEEEEETTSEEEEEETTTCC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-EeCC------EEEEEcCCCEEEEEECCCCC
Confidence 3567788888899999999999876643321100 00122322222 2333 38888999999999999999
Q ss_pred EEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC
Q 003467 100 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD 179 (817)
Q Consensus 100 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 179 (817)
.+............... .+ ..+++++.+
T Consensus 125 ~~W~~~~~~~~~~~p~~-~~---------------------------------------------------~~v~v~~~~ 152 (376)
T 3q7m_A 125 VAWQTKVAGEALSRPVV-SD---------------------------------------------------GLVLIHTSN 152 (376)
T ss_dssp EEEEEECSSCCCSCCEE-ET---------------------------------------------------TEEEEECTT
T ss_pred EEEEEeCCCceEcCCEE-EC---------------------------------------------------CEEEEEcCC
Confidence 88766543211000001 11 378889999
Q ss_pred CcEEEEEecCCCceeEeeccCCccc---eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCce--
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSG---RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL-- 254 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~-- 254 (817)
+.|..+|..+++.+-.... ..... ........ +..++.++.++.|..+|..+|+.+.+......... ....
T Consensus 153 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNL-DMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS-TEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEEC-CC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred CeEEEEECCCCcEEEEEeC-CCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC-cccccc
Confidence 9999999987776532211 11000 00111222 45788888899999999999999888764210000 0000
Q ss_pred -eEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 255 -CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 255 -~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.+.......++.++.++.++.+..+|..+|+.+..... .....+.. ++..|++++.++.|..+|..+++
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 01111122367888888999999999999998877653 33444444 36678888899999999998876
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=2e-11 Score=124.44 Aligned_cols=171 Identities=11% Similarity=0.044 Sum_probs=132.7
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-----------EEEEEeecCceEEEEeeecCCCccceeecc
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-----------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTN 129 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~ 129 (817)
..+..|++++...+ +|+|+.++ +.+|++.+.+ ..... .+.. |.+++| ++
T Consensus 38 ~~~nlLais~~~gl------l~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~--------- 97 (388)
T 1xip_A 38 ASLQNLDISNSKSL------FVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG--------- 97 (388)
T ss_dssp SCCBCEEEETTTTE------EEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET---------
T ss_pred ccccEEEEcCCCCE------EEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC---------
Confidence 36899999999876 89998885 6669976544 11223 3556 999999 65
Q ss_pred CccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEE
Q 003467 130 SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSV 209 (817)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 209 (817)
..|+++ .++.|++||+.+.... .....|+..+.++
T Consensus 98 -----------------------------------------~~L~v~-~~~~l~v~dv~sl~~~---~~~~~~~~~v~~i 132 (388)
T 1xip_A 98 -----------------------------------------DQVLVS-TRNALYSLDLEELSEF---RTVTSFEKPVFQL 132 (388)
T ss_dssp -----------------------------------------TEEEEE-ESSEEEEEESSSTTCE---EEEEECSSCEEEE
T ss_pred -----------------------------------------CEEEEE-cCCcEEEEEchhhhcc---CccceeecceeeE
Confidence 378877 8899999999755543 3445566778888
Q ss_pred EEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeE--E
Q 003467 210 TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL--L 287 (817)
Q Consensus 210 ~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~--~ 287 (817)
.+.+. .+++++.||.|.+||+.++.... ....|.+++|+|+| ++.|..||++++|+...+.. .
T Consensus 133 ~~~~p--~~av~~~dG~L~v~dl~~~~~~~------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k 197 (388)
T 1xip_A 133 KNVNN--TLVILNSVNDLSALDLRTKSTKQ------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQ 197 (388)
T ss_dssp EECSS--EEEEEETTSEEEEEETTTCCEEE------------EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEE
T ss_pred EecCC--CEEEEECCCCEEEEEccCCcccc------------ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcccccc
Confidence 87755 38889999999999999887643 23479999999999 78899999999999887775 5
Q ss_pred EEe------e---cCccCeeEEEEecCCCEEEE
Q 003467 288 QAH------S---FHKGDVNALAAAPSHNRVFS 311 (817)
Q Consensus 288 ~~~------~---~h~~~v~~l~~s~~~~~l~~ 311 (817)
.++ . +|...|.++.|.+++.++++
T Consensus 198 ~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 198 FEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 556 2 36788999999999887775
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=2.9e-10 Score=115.72 Aligned_cols=284 Identities=7% Similarity=-0.088 Sum_probs=169.2
Q ss_pred EEEEcCCC----cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc----------cCCcEEEEEeecccCCCCC
Q 003467 267 LVSADSTG----SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG----------SDGQVILYKASCESIGPND 332 (817)
Q Consensus 267 l~s~~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~ 332 (817)
+++...++ +|.++|..+++.+.++.....+ .++++||+++++++. .++.|.+||..+.+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----- 107 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----- 107 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-----
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-----
Confidence 44444444 7889999999999999876665 799999999999885 37889999999987
Q ss_pred CCCCccccceEEEeeccccC-------CCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEec
Q 003467 333 GLSSSEVIKKWIYVGSVRAH-------THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG 405 (817)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 405 (817)
.+..+... ......++++ ||++ +++.+.
T Consensus 108 ------------vv~~I~v~~~~~~~~g~~P~~ia~S---------pDGk------------------------~lyVan 142 (368)
T 1mda_H 108 ------------PIADIELPDAPRFSVGPRVHIIGNC---------ASSA------------------------CLLFFL 142 (368)
T ss_dssp ------------EEEEEEETTSCSCCBSCCTTSEEEC---------TTSS------------------------CEEEEE
T ss_pred ------------EEEEEECCCccccccCCCcceEEEc---------CCCC------------------------EEEEEc
Confidence 55555432 1346678887 8887 666554
Q ss_pred C--CCeEEE--EeCCcccccCCcccCCCCCCCceeeecceeecCCe--EEEE-EeCCeEEEEEecccCCcccCCCCCCCC
Q 003467 406 D--DTKLFA--YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS--LLLV-QYSCRLDILSVRLENNVESRSSSGGHA 478 (817)
Q Consensus 406 ~--dg~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~-~~~~~i~i~~~~~~~~~~~~~~~~g~~ 478 (817)
. +..+.+ +|..+.. ... .+.. ..+.|++ .+++ +.++.+.+.++....... +..
T Consensus 143 ~~~~~~v~V~~iD~~tv~---~i~---v~~~--------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~------~~v 202 (368)
T 1mda_H 143 FGSSAAAGLSVPGASDDQ---LTK---SASC--------FHIHPGAAATHYLGSCPASLAASDLAAAPAAA------GIV 202 (368)
T ss_dssp CSSSCEEEEEETTTEEEE---EEE---CSSC--------CCCEEEETTEEECCCCTTSCEEEECCSSCCCC------EEC
T ss_pred cCCCCeEEEEEEchhhce---EEE---CCCc--------eEEccCCCeEEEEEcCCCCEEEEECccccccC------CeE
Confidence 3 457888 8887611 111 1100 1111222 1111 122233333332200000 000
Q ss_pred ccceeeeeeecCCCCeEEEEecCCCc-EEEEEcCCceEEEEeecCCCCCceEEEeeecCCc--------cccceeEEEEe
Q 003467 479 STSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--------KLQFAHSMIFS 549 (817)
Q Consensus 479 ~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~fs 549 (817)
.......+... .... + ++++. ++.++. +.+.+.++... ...+ +....+.. .......++|+
T Consensus 203 ~~~~t~~i~vg-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~--~~~v--~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 203 GAQCTGAQNCS-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA--GATM--KAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCCSCTTSCBC-SCCE---E-ETTTTEEEECBS-SCCEEEECCSS--CCEE--ECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred EEEeeeeeeCC-CCcc---c-cccCCEEEEEcC-CEEEEEECCCC--cceE--EEEEEeccccccccccccCcceeeEEc
Confidence 00000001111 1222 3 45454 444456 88888887531 1111 11111110 00122337899
Q ss_pred cCCCEEEEEec-C--------CcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEE-EEEe-CCCcEE
Q 003467 550 YDSSQLIIAGH-D--------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVN-CFGDVY 618 (817)
Q Consensus 550 pd~~~l~~~~~-d--------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~-~dg~i~ 618 (817)
||+++++++.. + +.+.++|+.+++.+.++.. ......++|+|||+++ ++.. .++.|.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------------g~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------------GHDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------------EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------------CCCcceEEECCCCCEEEEEccCCCCeEE
Confidence 99999987654 2 3567999999999998885 3468999999999854 4455 489999
Q ss_pred EEECCCcceEEEEecCCCCCeEEEEecC
Q 003467 619 IFNLEIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 619 vwd~~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
|+|+.+++....++.. .....+++.+
T Consensus 341 VID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEECCCCcEEEEEECC--CCCCEEEeec
Confidence 9999999988777654 3567777765
No 225
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1.1e-09 Score=114.84 Aligned_cols=203 Identities=15% Similarity=-0.000 Sum_probs=136.9
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccC
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
....+|+|++++++ +++...++.|++||..++........ ..... ++|++++
T Consensus 131 ~~P~~la~d~~g~l------yv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-------------------- 182 (409)
T 3hrp_A 131 KYMWGIAAVGNNTV------LAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-------------------- 182 (409)
T ss_dssp CCEEEEEECSTTEE------EEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTS--------------------
T ss_pred CCceEEEEeCCCCE------EEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCC--------------------
Confidence 36889999999875 66666779999999998887655544 33333 8899988
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC--cEEEEEecCCCceeEeeccCC-ccceEEEEEEccCCCE
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG--CVRIYRITDSDELIYHRSLPR-VSGRVLSVTWSADGNM 217 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~ 217 (817)
+.|+++..++ .|.+|+..++........+.. ....+.+++++|++..
T Consensus 183 ------------------------------~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~ 232 (409)
T 3hrp_A 183 ------------------------------QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW 232 (409)
T ss_dssp ------------------------------SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE
T ss_pred ------------------------------CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe
Confidence 4777777765 788888765544322212222 4566788999996566
Q ss_pred EEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeE--EEeEEecC-Ce-EEEEcCCCcEEEEeCCCCeEEEEeecC
Q 003467 218 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI--WSLLSLRC-GT-LVSADSTGSVQFWDSRHGTLLQAHSFH 293 (817)
Q Consensus 218 l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v--~~v~~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h 293 (817)
|+.+..++.|+.||..++........... +....- ..++|+|+ +. +++-...+.|+.|+... . +..+.++
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~----g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~ 306 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELS----GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGS 306 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCC----SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEEC
T ss_pred EEEEECCCcEEEEECCCCCEEEEeccccc----CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeC
Confidence 66677788999999987763222111011 111111 28999994 64 55666678899999863 3 3333333
Q ss_pred c---------------cCeeEEEEecCCCEEEEEc-cCCcEEEEEeeccc
Q 003467 294 K---------------GDVNALAAAPSHNRVFSTG-SDGQVILYKASCES 327 (817)
Q Consensus 294 ~---------------~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 327 (817)
. .....++++++|+.+++-. .++.|+.|++.++.
T Consensus 307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 2 3478899999999777777 78899999965543
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=5.8e-10 Score=114.59 Aligned_cols=276 Identities=12% Similarity=0.011 Sum_probs=164.6
Q ss_pred ceEEEEEEccCCCEEEEee--CCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC------CCc
Q 003467 204 GRVLSVTWSADGNMLYSGS--SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGS 275 (817)
Q Consensus 204 ~~v~~v~~s~dg~~l~s~~--~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------dg~ 275 (817)
.....++++++|+.+++.. .++.++||.+.+++. ..+... ......+...+..+++.+++.|...+. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~-~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQ-SGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCC-CSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCc-ccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 5788999999999988864 234356666555542 222100 011124557899999999997666554 478
Q ss_pred EEEEeCCCCeEEEEeecC------ccCeeEEEEecCCCEEEEE-c---cCCcEEEEEeecccCCCCCCCCCccccceEEE
Q 003467 276 VQFWDSRHGTLLQAHSFH------KGDVNALAAAPSHNRVFST-G---SDGQVILYKASCESIGPNDGLSSSEVIKKWIY 345 (817)
Q Consensus 276 i~iwd~~~~~~~~~~~~h------~~~v~~l~~s~~~~~l~~~-~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
|.+||+.+++.+..+... ...+..+++++++..++.+ . .++.|.+|++.+++ .
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-----------------~ 157 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-----------------A 157 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-----------------E
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-----------------E
Confidence 999999999987776532 2346889999876555544 3 57899999987665 2
Q ss_pred eeccccCCCccc-eeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcccccCCc
Q 003467 346 VGSVRAHTHDVR-ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH 424 (817)
Q Consensus 346 ~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~~~~~~ 424 (817)
...+..|..... ...+. ++++ .+.+...++.+..|.
T Consensus 158 ~r~~~~~~~~~~~~~~~~---------~~g~------------------------~~~~~~~~g~~~~~~---------- 194 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLV---------IDGV------------------------PVQIGQPDGTVIRPH---------- 194 (343)
T ss_dssp EEECTTCTTTSCCSCCCE---------ETTE------------------------ECBEECTTSCEECCC----------
T ss_pred EEEecCCCccccccccee---------ECCE------------------------EEEeccCCCceecee----------
Confidence 333333321100 01111 1221 233333333332211
Q ss_pred ccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEecCCCc
Q 003467 425 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM 504 (817)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 504 (817)
..+..++++|||+
T Consensus 195 -------------------------------------------------------------------~~~~gia~s~dg~ 207 (343)
T 2qe8_A 195 -------------------------------------------------------------------LGVNGIVLDAENE 207 (343)
T ss_dssp -------------------------------------------------------------------CCEEEEEECTTSC
T ss_pred -------------------------------------------------------------------cccceeEeccCCC
Confidence 1245678888888
Q ss_pred EEEEEcCCceEEEEeecC--CCCC----ceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeee
Q 003467 505 LFAYSDHVKPSLFELKKG--KVGQ----GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 578 (817)
Q Consensus 505 ~la~~~~~~i~l~~~~~~--~~~~----~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~ 578 (817)
.|.++....-++|.+... ..+. .++ ......++......++++++|.++++...++.|.+||.++++.....
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~ 285 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELG--SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLV 285 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhh--cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEE
Confidence 777764433466666531 0000 000 00000112224567999999999998888999999998567643333
Q ss_pred ccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEE
Q 003467 579 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 620 (817)
Q Consensus 579 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw 620 (817)
... +...++.++|+++|+++++.+..+.+.+|
T Consensus 286 ~~~----------~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 286 TDE----------KLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECG----------GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECC----------ceecCCeeEECCCCcEEEEeCcccccccc
Confidence 210 24568999999999988887765555444
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=4.3e-09 Score=117.90 Aligned_cols=315 Identities=12% Similarity=0.091 Sum_probs=182.9
Q ss_pred CCeEEEEcCCCcEEEEeCCCCeEEEEeecCccC-----------eeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCC
Q 003467 264 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD-----------VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND 332 (817)
Q Consensus 264 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 332 (817)
++.++.++.++.|.-+|..+|+.+.++...... ...+++ ++..|++++.|+.|..+|..+++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~----- 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGK----- 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC-----
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCC-----
Confidence 778888888899999999999999888654221 122333 46689999999999999999887
Q ss_pred CCCCccccceEEEeeccc-cCCCccce-eEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecC----
Q 003467 333 GLSSSEVIKKWIYVGSVR-AHTHDVRA-LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD---- 406 (817)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~h~~~v~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---- 406 (817)
..|..-.... .....+.+ ..+ .+ ..++.++.
T Consensus 150 --------~~W~~~~~~~~~~~~~~~~~p~v----------~~-------------------------~~v~v~~~~~~~ 186 (677)
T 1kb0_A 150 --------EVWHQNTFEGQKGSLTITGAPRV----------FK-------------------------GKVIIGNGGAEY 186 (677)
T ss_dssp --------EEEEEETTTTCCSSCBCCSCCEE----------ET-------------------------TEEEECCBCTTT
T ss_pred --------EEeeecCCcCcCcCcccccCcEE----------EC-------------------------CEEEEEeccccc
Confidence 3443221100 00011111 111 11 14444443
Q ss_pred --CCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCC-----CCCCc
Q 003467 407 --DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS-----GGHAS 479 (817)
Q Consensus 407 --dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~-----~g~~~ 479 (817)
++.|+.+|..+.+. +|.+............ .+...
T Consensus 187 ~~~g~v~a~D~~tG~~--------------------------------------~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 187 GVRGYITAYDAETGER--------------------------------------KWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp CCBCEEEEEETTTCCE--------------------------------------EEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCCCEEEEEECCCCcE--------------------------------------EEEeccCCCCcccccccccccccccc
Confidence 68899999887552 3443322111000000 00000
Q ss_pred c---ceeeeeeecCCCCeEEEEecCCCcEEEEEcCCc------------------eEEEEeecCCCCCceEEEeeecCCc
Q 003467 480 T---SLLVQVKSKASRKIICSTISNSGMLFAYSDHVK------------------PSLFELKKGKVGQGEWIINKRQLPR 538 (817)
Q Consensus 480 ~---~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~------------------i~l~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
. ...... .........+++++++.++.++..+. -.|+-++. +.+..+|..+......
T Consensus 229 w~~~g~~~~~-~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~-~TG~~~W~~~~~~~d~ 306 (677)
T 1kb0_A 229 WDPSGKWWEA-GGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP-DTGKYKWHYQETPGDN 306 (677)
T ss_dssp SCGGGCHHHH-CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT-TTCCEEEEEESSTTCC
T ss_pred ccccCceeEe-CCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC-CCCCEEEEEecCCCcc
Confidence 0 000000 01112233567888887777754321 12444443 3477788765321110
Q ss_pred ----cccceeEEEEecCC---CEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCc----------------
Q 003467 539 ----KLQFAHSMIFSYDS---SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP---------------- 595 (817)
Q Consensus 539 ----~~~~i~~~~fspd~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 595 (817)
.......+....|| ..|+.++.+|.++++|..+|+++..+......-...+.....+
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 01122333444588 6888999999999999999999877653210000000000000
Q ss_pred --------eeEEEEccCCCEEEEEeC-------------------------------------------CCcEEEEECCC
Q 003467 596 --------ITKMFTSSDGQWLAAVNC-------------------------------------------FGDVYIFNLEI 624 (817)
Q Consensus 596 --------i~~l~~s~dg~~la~~~~-------------------------------------------dg~i~vwd~~~ 624 (817)
-..++|+|++.++++... .|.|..||+.+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 025789999988877643 27899999999
Q ss_pred cceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 625 QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 625 ~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
++..|..+.. .++....+.. ++.++++++.|+.+++||+++++.
T Consensus 467 G~~~W~~~~~--~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 467 QKAAWSVEHV--SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp TEEEEEEEES--SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcEEeecCCC--CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCce
Confidence 9999988643 2455556666 778899999999999999999986
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.25 E-value=6.1e-10 Score=114.14 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=120.7
Q ss_pred EEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCc
Q 003467 81 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD 160 (817)
Q Consensus 81 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (817)
|..++.++.|..|| .+++.+.........+.++...+++
T Consensus 33 l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g---------------------------------------- 71 (330)
T 3hxj_A 33 IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG---------------------------------------- 71 (330)
T ss_dssp EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT----------------------------------------
T ss_pred EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC----------------------------------------
Confidence 78888888999999 8888876665555555666666665
Q ss_pred cccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEE
Q 003467 161 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR 240 (817)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~ 240 (817)
.+.+++.+ |..+|. +++.+ ..+...........+. +..|..++.++.|..+|.. |+....
T Consensus 72 -----------~l~v~t~~--l~~~d~-~g~~~---~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 72 -----------TIYFGSDK--VYAINP-DGTEK---WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp -----------EECCSSCE--EEEECC-CGGGG---GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred -----------cEEEecCc--EEEECC-CCcEE---EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 66666665 788876 34433 2332222222233333 5567788888999999988 887776
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 320 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~i 320 (817)
... ....+.++...+++.+..++.++.|..+|.. ++.+..+......+.++.+.+++. |+.++ +.|..
T Consensus 132 ~~~--------~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~ 199 (330)
T 3hxj_A 132 FKT--------KKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYA 199 (330)
T ss_dssp EEC--------SSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEE
T ss_pred EcC--------CCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEE
Confidence 662 3334566677778888889999999999999 888877776667788888887876 55555 78888
Q ss_pred EEeeccc
Q 003467 321 YKASCES 327 (817)
Q Consensus 321 w~~~~~~ 327 (817)
++ .++.
T Consensus 200 ~d-~~g~ 205 (330)
T 3hxj_A 200 IN-PDGT 205 (330)
T ss_dssp EC-TTSC
T ss_pred EC-CCCc
Confidence 88 4444
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=2.7e-09 Score=119.72 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=127.1
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC----C-CcE-EEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP----K-SRI-SSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL 98 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~----~-~~V-~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 98 (817)
+..|.+++.++.|.-+|..+|+..|.......... . ..+ ..++. ++ .+|+.++.|+.|..+|..+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~------g~v~v~~~dg~l~AlDa~TG 141 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WK------GKVYVGVLDGRLEAIDAKTG 141 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET------TEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--EC------CEEEEEccCCEEEEEECCCC
Confidence 55677778889999999999997775432111000 0 000 11222 23 34889999999999999999
Q ss_pred eEEEEEeec-C-ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEE
Q 003467 99 KQKIVLQSI-D-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALA 176 (817)
Q Consensus 99 ~~~~~~~~~-~-~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (817)
+.+..+... . .....+..+| .+. +..++++
T Consensus 142 ~~~W~~~~~~~~~~~~~~~~sP-----------------------------------------------~v~-~g~v~vg 173 (689)
T 1yiq_A 142 QRAWSVDTRADHKRSYTITGAP-----------------------------------------------RVV-NGKVVIG 173 (689)
T ss_dssp CEEEEEECCSCTTSCCBCCSCC-----------------------------------------------EEE-TTEEEEC
T ss_pred CEeeeecCcCCCCCCccccCCc-----------------------------------------------EEE-CCEEEEE
Confidence 988776532 1 0000000111 000 1245554
Q ss_pred e------CCCcEEEEEecCCCceeEeeccCC----------------------------ccceEEEEEEccCCCEEEEee
Q 003467 177 C------DDGCVRIYRITDSDELIYHRSLPR----------------------------VSGRVLSVTWSADGNMLYSGS 222 (817)
Q Consensus 177 ~------~dg~i~iwd~~~~~~~~~~~~~~~----------------------------h~~~v~~v~~s~dg~~l~s~~ 222 (817)
+ .+|.|+.||..+++.+-......+ +......++++|++..|+.+.
T Consensus 174 ~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~ 253 (689)
T 1yiq_A 174 NGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV 253 (689)
T ss_dssp CBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEEC
T ss_pred eCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeC
Confidence 4 368899999988876533222111 011113678999999999988
Q ss_pred CCCc-------------------EEEEECCCCceEEEEEeecCCC-CCCCceeEEEeEEecCC----eEEEEcCCCcEEE
Q 003467 223 SDGY-------------------IRSWDAKLGYEIYRITVGLGGL-GSGPELCIWSLLSLRCG----TLVSADSTGSVQF 278 (817)
Q Consensus 223 ~dg~-------------------i~vwd~~~g~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~----~l~s~~~dg~i~i 278 (817)
.++. |..||..+|+.+..+....... .......+.......+| .++.++.+|.+.+
T Consensus 254 ~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 254 GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence 8764 9999999999999887421100 00011111111222355 4888999999999
Q ss_pred EeCCCCeEEEEe
Q 003467 279 WDSRHGTLLQAH 290 (817)
Q Consensus 279 wd~~~~~~~~~~ 290 (817)
+|..+|+++...
T Consensus 334 lD~~tG~~l~~~ 345 (689)
T 1yiq_A 334 IDRATGELLSAK 345 (689)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEeccc
Confidence 999999988543
No 230
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=7.1e-09 Score=104.02 Aligned_cols=218 Identities=10% Similarity=0.039 Sum_probs=145.4
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
..--++..|+|++.. .+++...++.|..||..+++. ..+. ....+.++++++++
T Consensus 12 ~~~~Egp~w~~~~~~-----l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG------------------- 65 (297)
T 3g4e_A 12 CRCGESPVWEEVSNS-----LLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG------------------- 65 (297)
T ss_dssp CSBEEEEEEETTTTE-----EEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS-------------------
T ss_pred CccccCCeEECCCCE-----EEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC-------------------
Confidence 456789999997543 255556688999999998765 3333 45789999999998
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccCCCE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNM 217 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~ 217 (817)
+ ++++. ++.|.+||..++... ...... .....+..++++|+|++
T Consensus 66 -------------------------------~-l~v~~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l 111 (297)
T 3g4e_A 66 -------------------------------G-YVATI-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRY 111 (297)
T ss_dssp -------------------------------S-EEEEE-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCE
T ss_pred -------------------------------C-EEEEE-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCE
Confidence 3 44444 567899998754432 222221 12356899999999997
Q ss_pred EEEeeCC---------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeC--CCC
Q 003467 218 LYSGSSD---------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDS--RHG 284 (817)
Q Consensus 218 l~s~~~d---------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~--~~~ 284 (817)
.++...+ ..-.+|.+........+. ........++|+||+ .+ ++.+.++.|.+||+ .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G 183 (297)
T 3g4e_A 112 FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG 183 (297)
T ss_dssp EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred EEecCCcccccccccCCCcEEEEEECCCCEEEEe--------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence 7654321 234455544322233332 133446789999999 34 56666889999987 455
Q ss_pred eE-----EEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCcccee
Q 003467 285 TL-----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL 359 (817)
Q Consensus 285 ~~-----~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 359 (817)
.. ...+..+......++++++|+..++....+.|..|+..+++ .+..+..+...+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-----------------~~~~i~~p~~~~t~~ 246 (297)
T 3g4e_A 184 QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-----------------RLQTVKLPVDKTTSC 246 (297)
T ss_dssp CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC-----------------EEEEEECSSSBEEEE
T ss_pred cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce-----------------EEEEEECCCCCceEE
Confidence 43 22333344567899999999877776667889999988766 566666666678888
Q ss_pred Eee
Q 003467 360 TVA 362 (817)
Q Consensus 360 ~~~ 362 (817)
+|.
T Consensus 247 ~f~ 249 (297)
T 3g4e_A 247 CFG 249 (297)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.23 E-value=8.4e-10 Score=113.37 Aligned_cols=233 Identities=8% Similarity=-0.033 Sum_probs=148.0
Q ss_pred CceEEEEECCCCCeEEEEe--cCCcEEEEecCCCCCCcEEEEEEcC------CCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 14 SPVVALATSADDSQVAAAR--EDGSLEIWLVSPGTSGWHCQLTVHG------DPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~g------~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
.....++++|+|+.+++.. .++.+.||.+.+++ ...++. .+-..+.+++|++++++ +++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-----~~~~p~~~~~~~~~~~~p~gv~~d~~g~L------~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-----LIPFPPQSGNAIITFDTVLGIKSDGNGIV------WMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-----EEESCCCCSSCCCCCSCEEEEEECSSSEE------EEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-----eecCCCcccCcccceeEeeEEEEcCCCcE------EEEcC
Confidence 6899999999999888863 23446677665443 222221 12468999999999864 44432
Q ss_pred C-----CCeEEEEECCCCeEEEEEeec------CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 86 I-----DGSVSEWDLYDLKQKIVLQSI------DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 86 ~-----d~~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
. +..|.+||+.+++.+..+... ......+++++++..
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~-------------------------------- 133 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF-------------------------------- 133 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE--------------------------------
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE--------------------------------
Confidence 2 578999999999977776532 234577888875421
Q ss_pred CCCCCccccccccccCCEEEEEe---CCCcEEEEEecCCCceeEeeccCCc-----------------------------
Q 003467 155 NDSDSDELHEQSVVEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRV----------------------------- 202 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h----------------------------- 202 (817)
.+++.. .++.|.+||+.++... +.+.+|
T Consensus 134 -----------------~yvtd~~~~~~~~i~v~d~~~g~~~---r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 193 (343)
T 2qe8_A 134 -----------------VYISDPAPDDKAALIRVDLQTGLAA---RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRP 193 (343)
T ss_dssp -----------------EEEEECCSGGGCEEEEEETTTCCEE---EECTTCTTTSCCSCCCEETTEECBEECTTSCEECC
T ss_pred -----------------EEEEcCccCCCCeEEEEECCCCCEE---EEecCCCcccccccceeECCEEEEeccCCCceece
Confidence 334444 5778888888755433 222211
Q ss_pred cceEEEEEEccCCCEEEEeeCCC-cEEEEECC---CCc--------eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEE
Q 003467 203 SGRVLSVTWSADGNMLYSGSSDG-YIRSWDAK---LGY--------EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVS 269 (817)
Q Consensus 203 ~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~---~g~--------~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s 269 (817)
...+..|+|+|||+.|+++..++ .|..++.. .+. .+... ++......+++.++| .+++
T Consensus 194 ~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~g~pdgia~d~~G~l~va 264 (343)
T 2qe8_A 194 HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY---------SEKPICDGISIDKDHNIYVG 264 (343)
T ss_dssp CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE---------EECCSCSCEEECTTCCEEEE
T ss_pred ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec---------ccCCCCceEEECCCCCEEEE
Confidence 12368899999999999887765 44444321 111 00111 122245568899999 4666
Q ss_pred EcCCCcEEEEeCCCCeEEEEeec-CccCeeEEEEecCCCEEEEEccCCcE
Q 003467 270 ADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
...++.|.+||.++++....... +...+.+++|.++++.+++....+.+
T Consensus 265 ~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 265 DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 66788999999956764333322 24568899999998877776554443
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=1e-09 Score=124.38 Aligned_cols=198 Identities=13% Similarity=0.054 Sum_probs=129.7
Q ss_pred CCcEEEEEEeecCCCCCCCceEEE-----eeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFS-----SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG 134 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~ 134 (817)
...+.+++|||||++ ||- ++...+|++||+.+|+.+.. ..+......++|+ |++
T Consensus 128 ~~~l~~~~~SpDg~~------lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~------------- 186 (693)
T 3iuj_A 128 TTALDQLSFSRDGRI------LAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNE------------- 186 (693)
T ss_dssp CCEEEEEEECTTSSE------EEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTT-------------
T ss_pred cEEEEEEEECCCCCE------EEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCC-------------
Confidence 457999999999987 763 23336799999999986543 1122223578899 885
Q ss_pred CccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC-------------CcEEEEEecCCCc-eeEeeccC
Q 003467 135 NGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD-------------GCVRIYRITDSDE-LIYHRSLP 200 (817)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~-~~~~~~~~ 200 (817)
.|+.+..+ ..|++|++.++.. -.......
T Consensus 187 -------------------------------------~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 187 -------------------------------------GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp -------------------------------------EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred -------------------------------------EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 44444444 3599999875542 11223344
Q ss_pred C-ccceEEEEEEccCCCEEEEeeC----CCcEEEEECCCCc-eEEEEEeecCCCCCCCceeEEEeEEecCC-e-EEEEcC
Q 003467 201 R-VSGRVLSVTWSADGNMLYSGSS----DGYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADS 272 (817)
Q Consensus 201 ~-h~~~v~~v~~s~dg~~l~s~~~----dg~i~vwd~~~g~-~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~s~~~ 272 (817)
. |...+.++.|+|||++|+.... ++.|.++|+.++. ....+. .+....... ++++| . ++....
T Consensus 230 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~--------~~~~~~~~~-~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 230 PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ--------GDLDADVSL-VDNKGSTLYLLTNR 300 (693)
T ss_dssp GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE--------CSSSSCEEE-EEEETTEEEEEECT
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe--------CCCCceEEE-EeccCCEEEEEECC
Confidence 4 5566889999999998865443 2589999998764 445555 233344444 44444 4 444444
Q ss_pred C---CcEEEEeCCCCeE--EEEeecCccCeeEEEEecCCCEEEEEcc-CC--cEEEEEeecc
Q 003467 273 T---GSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGS-DG--QVILYKASCE 326 (817)
Q Consensus 273 d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~~~~~-dg--~i~iw~~~~~ 326 (817)
+ +.|..+|+.++.. .+.+..|...+. .|++++++|+.... ++ .|++|++.++
T Consensus 301 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 301 DAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred CCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 3 5799999987654 345666666665 89999998887665 43 5777776643
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=4.4e-10 Score=115.19 Aligned_cols=219 Identities=15% Similarity=0.142 Sum_probs=142.5
Q ss_pred EEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC
Q 003467 18 ALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD 97 (817)
Q Consensus 18 ~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 97 (817)
++++..+|. |.+++.++.|..|| .+++..| ....+ ...+.++...+++. |..++.+ |..+|. +
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~----~~~~~-~~~~~~~~~~~~g~-------l~v~t~~--l~~~d~-~ 86 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKW----FFKSG-EIIECRPSIGKDGT-------IYFGSDK--VYAINP-D 86 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEE----SSCGG-GEEEECCEETTTTE-------ECCSSCE--EEEECC-C
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEE----EEecC-CCcccceEEecCCc-------EEEecCc--EEEECC-C
Confidence 344545564 66677788899999 7776322 22211 33456666666654 5555544 888885 5
Q ss_pred CeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 98 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
|+.+..+...........+. + ..+.+++
T Consensus 87 g~~~~~~~~~~~~~~~~~~~-~---------------------------------------------------~~l~v~t 114 (330)
T 3hxj_A 87 GTEKWRFDTKKAIVSDFTIF-E---------------------------------------------------DILYVTS 114 (330)
T ss_dssp GGGGGGSCC-----CCEEEE-T---------------------------------------------------TEEEEEC
T ss_pred CcEEEEEECCCCcccCceEE-C---------------------------------------------------CEEEEEe
Confidence 55443333222111112222 2 3788899
Q ss_pred CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEE
Q 003467 178 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 257 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~ 257 (817)
.++.|..+|.. +... .....+...+.++...+++. |..++.++.|..+|.. |+....+.. ....+.
T Consensus 115 ~~~~l~~~d~~-g~~~---~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--------~~~~~~ 180 (330)
T 3hxj_A 115 MDGHLYAINTD-GTEK---WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT--------NDAITS 180 (330)
T ss_dssp TTSEEEEECTT-SCEE---EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC--------SSCCCS
T ss_pred cCCEEEEEcCC-CCEE---EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec--------CCCcee
Confidence 89999999986 4443 22222334456667777776 5567778999999998 888777763 334566
Q ss_pred EeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 258 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 258 ~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
++...+++.+..++ +.|..+| .+++.+..+......+.+++..++|. |++++.++.|..++.
T Consensus 181 ~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 181 AASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP 242 (330)
T ss_dssp CCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT
T ss_pred eeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC
Confidence 67777788877777 8899999 77888877776667788999988875 666667788888863
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=1.4e-08 Score=103.33 Aligned_cols=212 Identities=12% Similarity=0.035 Sum_probs=138.3
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCC
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 141 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 141 (817)
-..+++|+|++.. .+++...++.|..||..+++.. .+. ....+.++++++++
T Consensus 50 ~~egp~~~~~~~~-----l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg--------------------- 101 (326)
T 2ghs_A 50 LGEGPTFDPASGT-----AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS--------------------- 101 (326)
T ss_dssp BEEEEEEETTTTE-----EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT---------------------
T ss_pred CCcCCeEeCCCCE-----EEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC---------------------
Confidence 4578899998653 2555556789999999988653 333 35679999999998
Q ss_pred CCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccC--CccceEEEEEEccCCCEEE
Q 003467 142 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLY 219 (817)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~ 219 (817)
.+++++.+ .|.+||..++... ...... .....+.+++++|+|++.+
T Consensus 102 ------------------------------~l~v~~~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v 149 (326)
T 2ghs_A 102 ------------------------------KQLIASDD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWI 149 (326)
T ss_dssp ------------------------------EEEEEETT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEE
T ss_pred ------------------------------eEEEEECC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEE
Confidence 44445554 4899998755432 222221 1235789999999999776
Q ss_pred EeeC------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCC--CC-e---
Q 003467 220 SGSS------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSR--HG-T--- 285 (817)
Q Consensus 220 s~~~------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~--~~-~--- 285 (817)
+... .+.|..++ +++.. .+.. .......++|++|+ .+ ++...++.|.+||.. ++ .
T Consensus 150 ~~~~~~~~~~~~~l~~~~--~g~~~-~~~~--------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 150 GTMGRKAETGAGSIYHVA--KGKVT-KLFA--------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp EEEETTCCTTCEEEEEEE--TTEEE-EEEE--------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred EeCCCcCCCCceEEEEEe--CCcEE-EeeC--------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 5442 24555555 45433 3321 22346789999999 44 455667899999985 55 3
Q ss_pred --EEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEee
Q 003467 286 --LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA 362 (817)
Q Consensus 286 --~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 362 (817)
....+......+..++++++|+..++...++.|..|+. .++ .+..+..+...+.+++|.
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~-----------------~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGN-----------------HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCC-----------------EEEEEECSCSBEEEEEEE
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCC-----------------EEEEEECCCCCcEEEEEe
Confidence 22233333456778999999987666656788999987 333 344445555567777774
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=127.92 Aligned_cols=205 Identities=14% Similarity=0.093 Sum_probs=118.6
Q ss_pred CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEE
Q 003467 24 DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 24 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 103 (817)
++.+|++++.||.|..||..+|+..|.... +.+.+..+..++.. +++++.|+.|..||..+|+.+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~~~g~~------~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTHVEEPA------FLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC-----CC------EEECTTTCCEEEC-----CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceEcCCCE------EEEeCCCCEEEEEECCCCceeee
Confidence 578899999999999999999997664432 23444455566765 78888999999999999987766
Q ss_pred EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEE
Q 003467 104 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR 183 (817)
Q Consensus 104 ~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 183 (817)
+..+..... ..+| .+..+..+++++.++.|+
T Consensus 75 ~~~~~~~~~--~~sp-----------------------------------------------~~~~~~~v~~g~~dg~v~ 105 (369)
T 2hz6_A 75 LPFTIPELV--QASP-----------------------------------------------CRSSDGILYMGKKQDIWY 105 (369)
T ss_dssp CSCCHHHHH--TTCS-----------------------------------------------CC-----CCCCEEEEEEE
T ss_pred eeccCcccc--ccCc-----------------------------------------------eEecCCEEEEEeCCCEEE
Confidence 543321100 0000 000113677888899999
Q ss_pred EEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEec
Q 003467 184 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR 263 (817)
Q Consensus 184 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 263 (817)
.||..+++.+ ..+..+. ...++|++..|++++.|+.|+.||..+|+.+.++... ......+..
T Consensus 106 a~D~~tG~~~---w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~----------~~~~~~~~~ 168 (369)
T 2hz6_A 106 VIDLLTGEKQ---QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF----------DYAASLPED 168 (369)
T ss_dssp EECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE----------EECCBCCCC
T ss_pred EEECCCCcEE---EEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc----------cccCccccC
Confidence 9999888765 4444332 2345678899999999999999999999988776531 012223333
Q ss_pred ----CCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCC
Q 003467 264 ----CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 264 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 307 (817)
++.+++++.+|.|..||..+|+.+.++......+...++++++.
T Consensus 169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred CccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 26788889999999999999999888764333233344555553
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=6.4e-10 Score=113.21 Aligned_cols=238 Identities=12% Similarity=0.034 Sum_probs=149.7
Q ss_pred EEEECCCCCeEEEEe----------cCCcEEEEecCCCCCCcEEEEEEcCC--C----CCcEEEEEEeecCCCCCCCceE
Q 003467 18 ALATSADDSQVAAAR----------EDGSLEIWLVSPGTSGWHCQLTVHGD--P----KSRISSLVWCHAGKMGLPGGRL 81 (817)
Q Consensus 18 ~la~spdg~~la~~~----------~dg~i~iwd~~~~~~~~~~~~~~~g~--~----~~~V~~l~~s~~~~~~~~~~~l 81 (817)
.++|||||++|.++. .++.|.+||..+++. ..++..+ . ......++|+|||++ |
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v----v~~I~v~~~~~~~~g~~P~~ia~SpDGk~------l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP----IADIELPDAPRFSVGPRVHIIGNCASSAC------L 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE----EEEEEETTSCSCCBSCCTTSEEECTTSSC------E
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE----EEEEECCCccccccCCCcceEEEcCCCCE------E
Confidence 799999999999985 368899999999883 5555321 0 023458999999998 8
Q ss_pred EEeeC--CCeEEE--EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCC
Q 003467 82 FSSSI--DGSVSE--WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS 157 (817)
Q Consensus 82 ~s~~~--d~~i~v--wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (817)
+++.. +..|.+ +|+.+ +..+..- +. ..+.|++.
T Consensus 139 yVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~------------------------------------ 175 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAA------------------------------------ 175 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEET------------------------------------
T ss_pred EEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCC------------------------------------
Confidence 88764 467888 99887 4444321 11 23445553
Q ss_pred CCccccccccccCCEEEEEeCCCcEEEEEecC----CCceeEee--ccCCccceEEEEEEccCCCEEEEeeCCCcEEEEE
Q 003467 158 DSDELHEQSVVEDRRVALACDDGCVRIYRITD----SDELIYHR--SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 231 (817)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~--~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 231 (817)
..+++.+.||.+.+.++.+ ...+.... .+.-...+. + ++++..++..+. +.|.+.|
T Consensus 176 -------------~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 176 -------------ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp -------------TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEE
T ss_pred -------------eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEE
Confidence 2556677788888888865 22221000 111112233 3 666777777666 8999999
Q ss_pred CCCCce--EEEEEeecCC--CCCCCceeEEEeEEecCC-eEEEE-c---C-----CCcEEEEeCCCCeEEEEeecCccCe
Q 003467 232 AKLGYE--IYRITVGLGG--LGSGPELCIWSLLSLRCG-TLVSA-D---S-----TGSVQFWDSRHGTLLQAHSFHKGDV 297 (817)
Q Consensus 232 ~~~g~~--~~~~~~~~~~--~~~~~~~~v~~v~~~~~~-~l~s~-~---~-----dg~i~iwd~~~~~~~~~~~~h~~~v 297 (817)
..++.. +..+...... ...........+++++|+ ++..+ . . ++.+.++|..+++.+.++.... ..
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p 316 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DS 316 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EE
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-Cc
Confidence 865432 2212110000 000000111126799998 44433 3 2 2356699999999999887643 68
Q ss_pred eEEEEecCCCE-EEEEc-cCCcEEEEEeeccc
Q 003467 298 NALAAAPSHNR-VFSTG-SDGQVILYKASCES 327 (817)
Q Consensus 298 ~~l~~s~~~~~-l~~~~-~dg~i~iw~~~~~~ 327 (817)
..++|+|||++ +++.. .++.|.++|+.+.+
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 89999999985 45555 48999999999887
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=4e-08 Score=98.97 Aligned_cols=195 Identities=13% Similarity=0.084 Sum_probs=128.1
Q ss_pred CCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCcccc
Q 003467 60 KSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 139 (817)
Q Consensus 60 ~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (817)
.....+.+|+|+++. .+++...++.|..|+. +++ ...+..+...+..+++++++
T Consensus 44 ~~~~egp~~~~~g~~-----l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG------------------- 97 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRT-----LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ------------------- 97 (305)
T ss_dssp CSSEEEEEEEGGGTE-----EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-------------------
T ss_pred CcCccCCeEeCCCCE-----EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-------------------
Confidence 457889999999973 2666677899999998 455 44555567788999999998
Q ss_pred CCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEEEccCCCEE
Q 003467 140 DKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNML 218 (817)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l 218 (817)
+++++...++.|.+|+.. +....+.....+. ...+..++++|+|++.
T Consensus 98 -------------------------------~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~ 145 (305)
T 3dr2_A 98 -------------------------------RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIW 145 (305)
T ss_dssp -------------------------------CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEE
T ss_pred -------------------------------CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEE
Confidence 344444455789999875 4322111111111 1346789999999988
Q ss_pred EE----eeC-------------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC------C
Q 003467 219 YS----GSS-------------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST------G 274 (817)
Q Consensus 219 ~s----~~~-------------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d------g 274 (817)
++ |.. .+.|..||..+++..... .. .....++|+||+ .|+.++.. +
T Consensus 146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~--------~~p~gl~~spdg~~lyv~~~~~~~~~~~ 215 (305)
T 3dr2_A 146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL--------DHPNGLAFSPDEQTLYVSQTPEQGHGSV 215 (305)
T ss_dssp EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE--------SSEEEEEECTTSSEEEEEECCC---CCC
T ss_pred EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC--------CCCcceEEcCCCCEEEEEecCCcCCCCC
Confidence 86 432 256888887777654332 11 234678999999 46666554 6
Q ss_pred cEEEEeCCCCeEE--EEe-ecCccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 275 SVQFWDSRHGTLL--QAH-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 275 ~i~iwd~~~~~~~--~~~-~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.|.+|++..+... ..+ .........++++++|+ |.++..+ .|.+|+..
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD 266 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred EEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence 8999998754421 111 11234456789999998 5555555 48888874
No 238
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.07 E-value=5.1e-05 Score=83.53 Aligned_cols=493 Identities=8% Similarity=-0.037 Sum_probs=261.6
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEEEEECCCCeEEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVSEWDLYDLKQKIV 103 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~ 103 (817)
..+|..+. ...|+.-++.+... ...++-..-..+.+|+|.+.+.. |+.+. .++.|..++++.......
T Consensus 6 ~~~Ll~s~-~~~I~~i~l~~~~~----~~~~~~~~~~~~~~l~~d~~~~~------lywtD~~~~~I~r~~~~g~~~~~v 74 (628)
T 4a0p_A 6 EAFLLFSR-RADIRRISLETNNN----NVAIPLTGVKEASALDFDVTDNR------IYWTDISLKTISRAFMNGSALEHV 74 (628)
T ss_dssp CCEEEEEE-TTEEEEEESSCTTC----EEECCCCSCSCEEEEEEETTTTE------EEEEETTTTEEEEEETTSCSCEEE
T ss_pred CcEEEEEe-CCcEEEEECCCCCc----ceEEEcCCCCceEEEEEECCCCE------EEEEECCCCeEEEEECCCCCcEEE
Confidence 34666654 46799999987542 23333221357889999997754 66554 568899999876544333
Q ss_pred EeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEE
Q 003467 104 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR 183 (817)
Q Consensus 104 ~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 183 (817)
+.........+|+.+.+. ++.++-...+.|.
T Consensus 75 ~~~g~~~P~GlAvD~~~~-------------------------------------------------~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 75 VEFGLDYPEGMAVDWLGK-------------------------------------------------NLYWADTGTNRIE 105 (628)
T ss_dssp ECSSCSCCCEEEEETTTT-------------------------------------------------EEEEEETTTTEEE
T ss_pred EeCCCCCcceEEEEeCCC-------------------------------------------------EEEEEECCCCEEE
Confidence 332223456777776553 2445555667888
Q ss_pred EEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEE
Q 003467 184 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 261 (817)
Q Consensus 184 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~ 261 (817)
+.++........ +...-.....|++.|....|+.... .+.|...++. |.....+. ..-.....+++
T Consensus 106 v~~~dG~~~~~l---~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~~~~l~--------~~~~~P~Glal 173 (628)
T 4a0p_A 106 VSKLDGQHRQVL---VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLV--------PNVGRANGLTI 173 (628)
T ss_dssp EEETTSTTCEEE---ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE--------CSCSSEEEEEE
T ss_pred EEecCCCcEEEE---EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCceEEEE--------CCCCCcceEEE
Confidence 888864332211 1123345789999996666665542 4678888875 44444443 23345678999
Q ss_pred ecCC-eEE-EEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE-ccCCcEEEEEeecccCCCCCCCCCcc
Q 003467 262 LRCG-TLV-SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 262 ~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
.+++ +|. +-...+.|...|+..... ..+.........+++.. + .|+.+ ...+.|...+..++..
T Consensus 174 D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~---------- 240 (628)
T 4a0p_A 174 DYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQN---------- 240 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCS----------
T ss_pred ccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCc----------
Confidence 9865 554 445567899999874333 34443344566788864 3 45554 4477888887655541
Q ss_pred ccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCcc
Q 003467 339 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF 418 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~ 418 (817)
...+.........+.+..+..+.+. .++... + .+-+.+......+....
T Consensus 241 -------~~~l~~~~~~p~~i~v~~~~~q~~~-----------n~C~~~-n------g~C~~~C~~~~~~~~~C------ 289 (628)
T 4a0p_A 241 -------RTIIQGHLDYVMDILVFHSSRQSGW-----------NECASS-N------GHCSHLCLAVPVGGFVC------ 289 (628)
T ss_dssp -------CEEEECSCCSCCEEEEECGGGSCCC-----------CTTTTT-G------GGCSSEEEEETTTEEEE------
T ss_pred -------eEEEecCCCCcceeeeeeecccccc-----------eEeccC-C------CCcchhhhcCCCCCeeE------
Confidence 1122222223444444321111000 000000 0 00001111111111110
Q ss_pred cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEE
Q 003467 419 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST 498 (817)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 498 (817)
..+.......-...+..++..++.+....+.-..+..... . -..+....-..+..++
T Consensus 290 ---------~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~------------~--~~~l~~~~~~~~~~ld 346 (628)
T 4a0p_A 290 ---------GCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQS------------P--DIILPIHSLRNVRAID 346 (628)
T ss_dssp ---------ECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCC------------C--CEECCCTTCSCEEEEE
T ss_pred ---------EcCCCcEecccCCcCccccceeeeeccceEEEEecccccC------------c--eEEEEehhcCCceEEE
Confidence 0000000000000111234445555555554433321110 0 0112223335688899
Q ss_pred ecCCCcEEEEEcCCceEEEEeecCCCCCceEEEee-ecCCccccceeEEEEecCCCEEEEE-ecCCcEEEEEccCCceee
Q 003467 499 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLH 576 (817)
Q Consensus 499 ~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspd~~~l~~~-~~dg~i~v~d~~~~~~~~ 576 (817)
+.+....|..++...-+|+............ +.. .........+..+++...++.|..+ +..+.|.+.++. |+...
T Consensus 347 ~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v-~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~ 424 (628)
T 4a0p_A 347 YDPLDKQLYWIDSRQNMIRKAQEDGSQGFTV-VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVG 424 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE-EC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEE
T ss_pred EecCCCeEEEEecCcceEEEEEcCCCCceEE-EEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEE
Confidence 9987777777654333344443211111110 110 0000123467899999987766655 457789999975 55555
Q ss_pred eeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC-C--cEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEE
Q 003467 577 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI 653 (817)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~ 653 (817)
++... .......+++.|...+|...+.. . .|...+++.......+. ..-..++.|++.+ +.+.|.
T Consensus 425 ~l~~~----------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~-~~l~~P~gla~D~-~~~~LY 492 (628)
T 4a0p_A 425 VVLKG----------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF-SGLSKPIALALDS-RLGKLF 492 (628)
T ss_dssp EEEEC----------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEEC-SSCSCEEEEEEET-TTTEEE
T ss_pred EEEeC----------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEe-ccCCCccEEEEeC-CCCEEE
Confidence 54321 34568999999955555544432 2 57777787655443332 2234789999999 777777
Q ss_pred EEec-CCeEEEEEcCCCc
Q 003467 654 ITTS-SNQVYVFDVEAKQ 670 (817)
Q Consensus 654 ~~~~-d~~i~vwd~~~~~ 670 (817)
.+.. .+.|..+++++..
T Consensus 493 w~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGAN 510 (628)
T ss_dssp EEETTTTEEEEEETTSCS
T ss_pred EEeCCCCEEEEEeCCCCc
Confidence 7765 5789999997654
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.06 E-value=2.1e-08 Score=105.85 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=82.1
Q ss_pred ceeEEEEecCCCEEEEEec-CCcEEEEEccCCc------------eeeeeccCcccccccCCCCCCceeEEEEccCCCEE
Q 003467 542 FAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSE------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 608 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~-dg~i~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 608 (817)
...++.++|||+++++++. +.+|.++|+.+.+ ....+. -......++|+|||...
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~------------vG~gP~h~aF~~dG~aY 345 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE------------LGLGPLHTAFDGRGNAY 345 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB------------CCSCEEEEEECTTSEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC------------CCCCcceEEECCCCeEE
Confidence 4678999999999988775 7799999998653 222332 35668999999999444
Q ss_pred EEEeCCCcEEEEECCC----------cceEEEEecCCC-CCe---EEEEecCCCCCeEEEEecC--CeE-----------
Q 003467 609 AAVNCFGDVYIFNLEI----------QRQHWFISRLEG-ASV---TAAGFPPQNNNVLIITTSS--NQV----------- 661 (817)
Q Consensus 609 a~~~~dg~i~vwd~~~----------~~~~~~~~~~~~-~~i---~~l~~sp~d~~~l~~~~~d--~~i----------- 661 (817)
++...|+.|.+||+++ .+....++.... +.. ..+.++| ||++|+++..- ..+
T Consensus 346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ 424 (595)
T 1fwx_A 346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPEND 424 (595)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcc
Confidence 5666899999999987 445555544221 001 2235689 99999998642 234
Q ss_pred EEEEcCCCcc
Q 003467 662 YVFDVEAKQL 671 (817)
Q Consensus 662 ~vwd~~~~~~ 671 (817)
.++|++++++
T Consensus 425 ql~dis~~~m 434 (595)
T 1fwx_A 425 QLIDISGDKM 434 (595)
T ss_dssp EEEECSSSSC
T ss_pred eEEEcCCCcE
Confidence 7899977765
No 240
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.03 E-value=7e-05 Score=82.39 Aligned_cols=501 Identities=9% Similarity=-0.034 Sum_probs=252.4
Q ss_pred CceEEEEECCCCCeEEEEe-cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe-eCCCeEE
Q 003467 14 SPVVALATSADDSQVAAAR-EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-SIDGSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-~~d~~i~ 91 (817)
....+|+|++.+..|..+. .++.|..+++..... .+..+... -....+|++.+.+.. |+.+ ...+.|.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---~~~v~~~~-~~~P~GlAvD~~~~~------ly~~d~~~~~I~ 109 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVVSG-LLSPDGLACDWLGEK------LYWTDSETNRIE 109 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCEEEEEEETTTTE------EEEEETTTTEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---eEEEEeCC-CCCcCeEEEEecCCE------EEEEeCCCCEEE
Confidence 4578999999777777664 457788888876431 12333332 357899999986654 5544 4568999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+.+++.......+......-..|++.|.+.
T Consensus 110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g-------------------------------------------------- 139 (619)
T 3s94_A 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSG-------------------------------------------------- 139 (619)
T ss_dssp EEETTSCSCEEEECSSCSCCCCEEEETTTT--------------------------------------------------
T ss_pred EEECCCCCEEEEEeCCCCCCceEEEecCCC--------------------------------------------------
Confidence 999876543333323444566788887652
Q ss_pred EEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCC
Q 003467 172 RVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 172 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.|.... ..+.|...++....... .....-.....|++++++..|+.+.. .+.|...|+. |.....+..
T Consensus 140 ~ly~tD~g~~~~I~r~~~dG~~~~~---l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~~----- 210 (619)
T 3s94_A 140 FMYWTDWGEVPKIERAGMDGSSRFI---IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVK----- 210 (619)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEE---EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC---------
T ss_pred eEEEeccCCCCEEEEEECCCCceEE---EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEEe-----
Confidence 333333 23556555654222221 11122346789999998777776654 4678888885 433333321
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe-cCCCEEEEEccCCcEEEEEeeccc
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+.......+++..+..+++-...+.|...|..+|+....+.........+++. +..+-. + ....
T Consensus 211 --~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~--~-----------~n~C 275 (619)
T 3s94_A 211 --GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN--A-----------TNPC 275 (619)
T ss_dssp -------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCC--C-----------CCTT
T ss_pred --CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCC--c-----------cccc
Confidence 11122245666656445555567789999988887666655433333444432 211000 0 0000
Q ss_pred CCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCC
Q 003467 328 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 407 (817)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 407 (817)
. ......+.. ++.. .....-.|. + |.|.........+.. ...++|+.+. .
T Consensus 276 -~-----~~ng~Cs~l-Cl~~--~~~~~~~C~--C---------~~g~~l~~d~~~C~~---------~~~~~Ll~~~-~ 325 (619)
T 3s94_A 276 -G-----IDNGGCSHL-CLMS--PVKPFYQCA--C---------PTGVKLLENGKTCKD---------GATELLLLAR-R 325 (619)
T ss_dssp -T-----TTGGGCSSE-EEEC--SSTTSEEEE--C---------CTTCCBCTTSSCBCS---------SCSEEEEEEE-S
T ss_pred -c-----CCCCcccce-EECC--CCCCCceEe--C---------CchheecccCcccCC---------CCceEEEEEc-c
Confidence 0 000000011 1100 000001111 1 222110000000100 0112444433 4
Q ss_pred CeEEEEeCCcccccCCcccCCCCCCCceeeecceeecC-CeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeee
Q 003467 408 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV 486 (817)
Q Consensus 408 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~ 486 (817)
+.|+..++....... . ..+.. ....+..+.+++ ++.+.++....-.|+++...... ...+
T Consensus 326 ~~i~~i~l~~~~~~~-~---~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------------~~~v 386 (619)
T 3s94_A 326 TDLRRISLDTPDFTD-I---VLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------------SQFV 386 (619)
T ss_dssp SCEEEEESSSTTCCC-E---ECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------CEEE
T ss_pred cceEEEecCCCccce-e---EEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--------------cEEE
Confidence 466766775432111 0 01111 112344677876 45555555443334444322110 1111
Q ss_pred eecCCCCeEEEEecCCCcEEEEE--cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec--CC
Q 003467 487 KSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH--DR 562 (817)
Q Consensus 487 ~~~~~~~i~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~--dg 562 (817)
....-.....+|+...+..|..+ ..+.|.+.+++. .... ............+++.|...+|..... .+
T Consensus 387 ~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G---~~~~-----~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~ 458 (619)
T 3s94_A 387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG---TMRK-----ILISEDLEEPRAIVLDPMVGYMYWTDWGEIP 458 (619)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---CSCE-----EEECTTCCSEEEEEEETTTTEEEEEECSSSC
T ss_pred EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC---CeEE-----EEEECCCCCeeeEEEEcCCCcEEEecCCCCC
Confidence 12222456688898766555554 346676666643 2111 111223456889999997666666543 35
Q ss_pred cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCC-CcEEEEECCCcceEEEEecCCCCCeEE
Q 003467 563 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-GDVYIFNLEIQRQHWFISRLEGASVTA 641 (817)
Q Consensus 563 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~i~~ 641 (817)
.|...+++ |.....+... .-...+.|+++++++.|..++.. +.|..++++.......+.. ....+.+
T Consensus 459 ~I~r~~~d-G~~~~~l~~~----------~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~-~l~~P~g 526 (619)
T 3s94_A 459 KIERAALD-GSDRVVLVNT----------SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-KIPHIFG 526 (619)
T ss_dssp EEEEEETT-SCSCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEEC-CCCSSCC
T ss_pred EEEEEccC-CCccEEEEeC----------CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEecc-CCCCcEE
Confidence 67777765 4333333220 34578899999988888877654 6799999976654433321 1123455
Q ss_pred EEecCCCCCeEEEEec-CCeEEEEEcCCCc
Q 003467 642 AGFPPQNNNVLIITTS-SNQVYVFDVEAKQ 670 (817)
Q Consensus 642 l~~sp~d~~~l~~~~~-d~~i~vwd~~~~~ 670 (817)
|+... + .|..+.. .+.|...|..++.
T Consensus 527 lav~~-~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 527 FTLLG-D--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEET-T--EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEC-C--EEEEeecCCCeEEEEEcCCCc
Confidence 66653 2 5555543 3467666766663
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.03 E-value=8.7e-08 Score=91.68 Aligned_cols=211 Identities=17% Similarity=0.131 Sum_probs=142.6
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC--CCeEEEEECCCCeEEEEEeecCc-eEEEEeeecCCCccceee
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI--DGSVSEWDLYDLKQKIVLQSIDF-SIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~~~~~~ 127 (817)
...+++-........|+|++++.+ .++.+. +++|.+.|+.+++.+..+.-... ....+++. +.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~L------yvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~------ 76 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTL------FESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE------ 76 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEE------EEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT------
T ss_pred EEEEEECCCCCCcccEEEeCCCeE------EEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC------
Confidence 455565432345789999998643 444443 58999999999999988763221 11234443 31
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
...++.-.++.+.++|..+.+.+. .+.--...
T Consensus 77 -------------------------------------------~lyv~t~~~~~v~viD~~t~~v~~---~i~~g~~~-- 108 (266)
T 2iwa_A 77 -------------------------------------------KLYQVVWLKNIGFIYDRRTLSNIK---NFTHQMKD-- 108 (266)
T ss_dssp -------------------------------------------EEEEEETTCSEEEEEETTTTEEEE---EEECCSSS--
T ss_pred -------------------------------------------EEEEEEecCCEEEEEECCCCcEEE---EEECCCCC--
Confidence 245555678999999998766553 33211111
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeE
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTL 286 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 286 (817)
...+++||+.|+++..++.|.++|..+.+.+.++.....+ ..-..++.+.|. +|.+ +....++.|.+.|..+++.
T Consensus 109 g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~---~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 109 GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG---HRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC---cccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence 1335568887877777889999999999999999864221 111236778888 7754 5555678999999999999
Q ss_pred EEEeecCc-------------cCeeEEEEecCCCEEEEEc-cCCcEEEEEeeccc
Q 003467 287 LQAHSFHK-------------GDVNALAAAPSHNRVFSTG-SDGQVILYKASCES 327 (817)
Q Consensus 287 ~~~~~~h~-------------~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 327 (817)
+..+.... .....++|+|+++.+++++ ..+.+.+.++....
T Consensus 185 ~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 185 LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 98886421 2457899999998777655 57888888887643
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=6.8e-11 Score=122.47 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=104.4
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
.++++++.|+.|..||..+|+.+..+.. +.+.+..+..++
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-------------------------------------- 49 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-------------------------------------- 49 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------------------------------------------
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC--------------------------------------
Confidence 4599999999999999999999988775 333333333333
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccc-eEE-EEEEccCCCEEEEeeCCCcEEEEECCCCc
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG-RVL-SVTWSADGNMLYSGSSDGYIRSWDAKLGY 236 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~-~v~~s~dg~~l~s~~~dg~i~vwd~~~g~ 236 (817)
..+++++.||.|+.||..+++.+ ..+..+.. .+. +..+. ++..|++++.|+.|+.||..+|+
T Consensus 50 ------------~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 50 ------------PAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE 113 (369)
T ss_dssp ------------CCEEECTTTCCEEEC-----CCS---EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---
T ss_pred ------------CEEEEeCCCCEEEEEECCCCcee---eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc
Confidence 36777789999999999877665 22222211 110 11111 35678888999999999999999
Q ss_pred eEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCC---CEEEEE
Q 003467 237 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH---NRVFST 312 (817)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~~~ 312 (817)
.+.++.. +. ...++|++ .+++++.++.|..||.++|+.+..+..+. ....+++.+. ..++++
T Consensus 114 ~~w~~~~--------~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~ 179 (369)
T 2hz6_A 114 KQQTLSS--------AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVS 179 (369)
T ss_dssp -------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEE
T ss_pred EEEEecC--------CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEE
Confidence 9887763 11 12334444 78888999999999999999877665322 2233444432 568888
Q ss_pred ccCCcEEEEEeeccc
Q 003467 313 GSDGQVILYKASCES 327 (817)
Q Consensus 313 ~~dg~i~iw~~~~~~ 327 (817)
+.||.|..||..+++
T Consensus 180 ~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 180 NGDGLVVTVDSESGD 194 (369)
T ss_dssp ETSCEEEEECTTTCC
T ss_pred CCCCEEEEEECCCCc
Confidence 899999999998876
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=9.7e-08 Score=106.83 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCEEEEEeCCCcEEEEEecCCCceeEeeccCCcc-------ceE-EEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEE
Q 003467 170 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-------GRV-LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI 241 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v-~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~ 241 (817)
+..+++++.++.|+-+|..+++.+-....-.... ..+ ..+++ ++..|+.++.|+.|..+|..+|+.+.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 3578888889999999998887763221111000 000 11222 3567888889999999999999999988
Q ss_pred EeecCCCCCCCceeEEEeEEecCCeEEEEcC------CCcEEEEeCCCCeEEEEeecCc---------------------
Q 003467 242 TVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHSFHK--------------------- 294 (817)
Q Consensus 242 ~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~--------------------- 294 (817)
...... ....+.+.-...++.++.+.. +|.|..+|.++|+.+.++....
T Consensus 144 ~~~~~~----~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 QTTDPA----KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ECSCTT----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ccCCCC----CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 742110 011111111112666666543 5889999999999998875311
Q ss_pred ----------cCeeEEEEecCCCEEEEEccCCc
Q 003467 295 ----------GDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 295 ----------~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
.....++++|+...++.++.++.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124688888888888877653
No 244
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.00 E-value=2e-07 Score=101.66 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=74.9
Q ss_pred CCEEEEEeC-CCcEEEEEe-cCCCceeEeeccCCc-c-------ceEEEEEEccCCCE----EEEeeCCCcEEEEECCCC
Q 003467 170 DRRVALACD-DGCVRIYRI-TDSDELIYHRSLPRV-S-------GRVLSVTWSADGNM----LYSGSSDGYIRSWDAKLG 235 (817)
Q Consensus 170 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~h-~-------~~v~~v~~s~dg~~----l~s~~~dg~i~vwd~~~g 235 (817)
+..+.+++. ++.|+-+|. .+++.+-....-... . .....++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 347777777 889999999 777765322111100 0 00123455444444 888889999999999999
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEc------CCCcEEEEeCCCCeEEEEeec
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSAD------STGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~ 292 (817)
+.+.+....... ....+.+--...++.++.++ .+|.|.-+|.++|+.+.++..
T Consensus 142 ~~~W~~~~~~~~----~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 142 ETVWKVENSDIK----VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CEEEEEECCCGG----GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEeecCCCCC----ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 999887642100 00011111111266766665 379999999999999988764
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=2.9e-07 Score=93.71 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=151.0
Q ss_pred EEC--CCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEc------CCCCCcEEEEEEeecCCCCCCCceEEEeeCC---
Q 003467 20 ATS--ADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVH------GDPKSRISSLVWCHAGKMGLPGGRLFSSSID--- 87 (817)
Q Consensus 20 a~s--pdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~------g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--- 87 (817)
+++ +++++|.+. ..++.|.|.|+.+.........++. ......-..+..+|+| . ++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i------~Vs~~g~~~g 160 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-I------YISALGNEEG 160 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-E------EEEEEEETTS
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-E------EEEcCCCcCC
Confidence 447 889988775 4568899999975432344566662 0002245677888998 6 6666555
Q ss_pred ---CeEEEEECCCCeEEEEEeecCce---EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 88 ---GSVSEWDLYDLKQKIVLQSIDFS---IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 88 ---~~i~vwd~~~~~~~~~~~~~~~~---i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+.|.+.|..+++.+.++.....+ -+.+.|+|+++.+++.....-.....-+..
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~--------------------- 219 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL--------------------- 219 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT---------------------
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch---------------------
Confidence 78999999999999888633222 234677888843222110000000000000
Q ss_pred ccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEE--ccCCCEEEEeeC------CCcEEEEECC
Q 003467 162 LHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW--SADGNMLYSGSS------DGYIRSWDAK 233 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--s~dg~~l~s~~~------dg~i~vwd~~ 233 (817)
+.+.. -....|.+||+.+++... ...+.........+.| +|+++++++++. +++|.+|...
T Consensus 220 ---------~~~~~-~~~d~V~v~D~~~~k~~~-tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 220 ---------EHLKD-RYGNRIHFWDLRKRKRIH-SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp ---------TTHHH-HSCCEEEEEETTTTEEEE-EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred ---------hhhhh-ccCCEEEEEECCCCcEee-EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 00000 246899999998653332 1222212234455655 999999988875 5688888776
Q ss_pred CCceEE--EEEeecCCCCCC----------CceeEEEeEEecCC--eEEEEcCCCcEEEEeCC---CCeEEEEeecCc--
Q 003467 234 LGYEIY--RITVGLGGLGSG----------PELCIWSLLSLRCG--TLVSADSTGSVQFWDSR---HGTLLQAHSFHK-- 294 (817)
Q Consensus 234 ~g~~~~--~~~~~~~~~~~~----------~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~---~~~~~~~~~~h~-- 294 (817)
.|+... .+.......... .......+.+++|| .+++.-..+.|.++|+. +.+++..+....
T Consensus 289 ~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~ 368 (462)
T 2ece_A 289 DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF 368 (462)
T ss_dssp TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT
T ss_pred CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee
Confidence 554222 221111000000 02457789999999 35566667899999985 345666654321
Q ss_pred ------------cCeeEEEEecCCCEEEEEc
Q 003467 295 ------------GDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 295 ------------~~v~~l~~s~~~~~l~~~~ 313 (817)
+.-..++++|||++|+++.
T Consensus 369 ~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 369 HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1357899999999999987
No 246
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.98 E-value=0.00011 Score=80.95 Aligned_cols=490 Identities=9% Similarity=0.022 Sum_probs=251.8
Q ss_pred eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CCeEEEEECCCCeE-EEEE
Q 003467 27 QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DGSVSEWDLYDLKQ-KIVL 104 (817)
Q Consensus 27 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~-~~~~ 104 (817)
+|.-+. ...|++.++...... ......+ -....+|+|++.+.. |+.+.. .+.|..++++.... ...+
T Consensus 11 ~~~~~~-~~~I~~i~~~~~~~~--~~~~~~~--~~~~~~ld~~~~~~~------ly~sD~~~~~I~r~~~~g~~~~~~v~ 79 (619)
T 3s94_A 11 LLLYAN-RRDLRLVDATNGKEN--ATIVVGG--LEDAAAVDFVFSHGL------IYWSDVSEEAIKRTEFNKTESVQNVV 79 (619)
T ss_dssp CEEEEC-SSBEEEECCC-----------CBC--CSCEEEEEEETTTTE------EEEEETTTTEEEEEEC-----CEEEE
T ss_pred eEEEec-cccEEEEeCCCCcce--EEEEEcC--CCceEEEEEEeCCCE------EEEEECCCCeEEEEEccCCCceEEEE
Confidence 444444 467999988764310 1222222 356889999987755 665543 57899999876532 2223
Q ss_pred eecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEE
Q 003467 105 QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRI 184 (817)
Q Consensus 105 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 184 (817)
...-.....+++.+.+. .+.++-...+.|.+
T Consensus 80 ~~~~~~P~GlAvD~~~~-------------------------------------------------~ly~~d~~~~~I~v 110 (619)
T 3s94_A 80 VSGLLSPDGLACDWLGE-------------------------------------------------KLYWTDSETNRIEV 110 (619)
T ss_dssp CSSCSCEEEEEEETTTT-------------------------------------------------EEEEEETTTTEEEE
T ss_pred eCCCCCcCeEEEEecCC-------------------------------------------------EEEEEeCCCCEEEE
Confidence 32225677889888653 24445556788988
Q ss_pred EEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 185 YRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 185 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
.++........ +...-.....|++.|.+.+|+.... .+.|...++. |.....+.. ..-.....+++.
T Consensus 111 ~~~dG~~~~~l---~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~-------~~~~~P~Glald 179 (619)
T 3s94_A 111 SNLDGSLRKVL---FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIIN-------SEIYWPNGLTLD 179 (619)
T ss_dssp EETTSCSCEEE---ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEEC-------SSCSSEEEEEEE
T ss_pred EECCCCCEEEE---EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEe-------CCCCCCcEEEEE
Confidence 88864332211 1123345678999998666665543 3567777764 544444431 233456889999
Q ss_pred cCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc-cCCcEEEEEeecccCCCCCCCCCccc
Q 003467 263 RCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYKASCESIGPNDGLSSSEV 339 (817)
Q Consensus 263 ~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~ 339 (817)
+++ +| ++-...+.|...|+..........+.......+++..+ .|+.+. ..+.|...+..++..
T Consensus 180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~----------- 246 (619)
T 3s94_A 180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG----------- 246 (619)
T ss_dssp TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC-----------
T ss_pred ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc-----------
Confidence 764 54 44455678999998743332222222233456777655 555554 467888888766551
Q ss_pred cceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEeCCccc
Q 003467 340 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 419 (817)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~~~~~~ 419 (817)
...+........++++..+..+ |.+. ..+... +. .-..-.+.+....+.-+.. ....
T Consensus 247 ------~~~i~~~~~~p~~i~v~~~~~q----p~~~------n~C~~~-ng----~Cs~lCl~~~~~~~~~C~C--~~g~ 303 (619)
T 3s94_A 247 ------LREIHSDIFSPMDIHAFSQQRQ----PNAT------NPCGID-NG----GCSHLCLMSPVKPFYQCAC--PTGV 303 (619)
T ss_dssp ------CEECCSCCCCCSEEEECCGGGS----CCCC------CTTTTT-GG----GCSSEEEECSSTTSEEEEC--CTTC
T ss_pred ------cEEEecCCCCCcEEEEEccccC----CCcc------ccccCC-CC----cccceEECCCCCCCceEeC--Cchh
Confidence 1122222223344444311110 1000 000000 00 0000011111001111100 0000
Q ss_pred ccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeecCCCCeEEEEe
Q 003467 420 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI 499 (817)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 499 (817)
.+. +.. . .+.-.+...+++.....+....+....... ..+....-..+..+++
T Consensus 304 ~l~-------~d~-----~-~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~--------------~~~~~~~l~~~~~ld~ 356 (619)
T 3s94_A 304 KLL-------ENG-----K-TCKDGATELLLLARRTDLRRISLDTPDFTD--------------IVLQLEDIRHAIAIDY 356 (619)
T ss_dssp CBC-------TTS-----S-CBCSSCSEEEEEEESSCEEEEESSSTTCCC--------------EECCCSCCSSEEEEEE
T ss_pred eec-------ccC-----c-ccCCCCceEEEEEcccceEEEecCCCccce--------------eEEeccccCccEEEEE
Confidence 000 000 0 001123344555555666666554332110 1122222356788999
Q ss_pred cCCCcEEEEEcC--CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe-cCCcEEEEEccCCceee
Q 003467 500 SNSGMLFAYSDH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLH 576 (817)
Q Consensus 500 s~~g~~la~~~~--~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~-~dg~i~v~d~~~~~~~~ 576 (817)
.+.+..|..++. +.|+.++++. ..... + +.........+++.+.+..|+.+. ..+.|.+.++.. +...
T Consensus 357 d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~--v----~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G-~~~~ 427 (619)
T 3s94_A 357 DPVEGYIYWTDDEVRAIRRSFIDG--SGSQF--V----VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG-TMRK 427 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS--CSCEE--E----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCE
T ss_pred EcCCCeEEEEeCCCCeEEEEEcCC--CccEE--E----EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC-CeEE
Confidence 986666666543 4444444432 11111 1 122234677899987666665554 467899999864 3333
Q ss_pred eeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEE
Q 003467 577 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII 654 (817)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~ 654 (817)
++... .-.....+++.|...+|..++. .+.|...+++........ ...-..++.|++.+ +.+.|..
T Consensus 428 ~l~~~----------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~l~~P~GlalD~-~~~~LY~ 495 (619)
T 3s94_A 428 ILISE----------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-NTSLGWPNGLALDY-DEGKIYW 495 (619)
T ss_dssp EEECT----------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCEEEEEEET-TTTEEEE
T ss_pred EEEEC----------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-eCCCCCCeeeEEcc-cCCEEEE
Confidence 33321 3456899999998666666653 367887888765443333 22235789999999 7777777
Q ss_pred EecC-CeEEEEEcCCCcc
Q 003467 655 TTSS-NQVYVFDVEAKQL 671 (817)
Q Consensus 655 ~~~d-~~i~vwd~~~~~~ 671 (817)
+... +.|..++++....
T Consensus 496 aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 496 GDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp EETTTTEEEEEESSSCCC
T ss_pred EECCCCEEEEEecCCCce
Confidence 7654 6899999976653
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=4.6e-07 Score=92.22 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=103.6
Q ss_pred EEEEEeCCCcEEEEEecC-CCceeEeeccC------Cc-cceEEEEEEccCCCEEEEeeCC------CcEEEEECCCCce
Q 003467 172 RVALACDDGCVRIYRITD-SDELIYHRSLP------RV-SGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYE 237 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~------~h-~~~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~g~~ 237 (817)
+++.+..++.|+++|+.+ ...+...+++. .. ...-..+..+|+| .++++..+ |.|.+.|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 555666789999999963 33444445442 11 1245667888999 76766555 7899999999999
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEc-------------------CCCcEEEEeCCCCeEEEEeecCc--c
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-------------------STGSVQFWDSRHGTLLQAHSFHK--G 295 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~h~--~ 295 (817)
+.++..+. .....-+.+.|+|++ .+++.. ...+|.+||+.+++.++++.... .
T Consensus 177 ~~~~~~~~-----~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 177 LGKWEIDR-----GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp EEECCSBC-----TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred EEEEccCC-----CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 98887421 222334567889999 455553 36889999999999888887531 3
Q ss_pred CeeEEEE--ecCCCEEEEEcc------CCcEEEEEeec
Q 003467 296 DVNALAA--APSHNRVFSTGS------DGQVILYKASC 325 (817)
Q Consensus 296 ~v~~l~~--s~~~~~l~~~~~------dg~i~iw~~~~ 325 (817)
....+.| +|++++++++.. +++|.+|..+.
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 3455555 999999998774 56888887764
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=7.7e-07 Score=97.31 Aligned_cols=383 Identities=11% Similarity=0.024 Sum_probs=194.3
Q ss_pred CCEEEEEeC-CCcEEEEEe-cCCCceeEeeccCCccc--------e-EEEEEEccCCCEEEEeeCCCcEEEEECCCCceE
Q 003467 170 DRRVALACD-DGCVRIYRI-TDSDELIYHRSLPRVSG--------R-VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI 238 (817)
Q Consensus 170 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~h~~--------~-v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~ 238 (817)
+..+.+++. ++.|+-+|. .+++.+-... +..... . -..++. ++..|+.++.|+.|..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 347777777 899999998 7777653221 111000 0 011233 3567888888999999999999999
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC------CCcEEEEeCCCCeEEEEeecCccC----------------
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHSFHKGD---------------- 296 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~---------------- 296 (817)
.+....... ....+.+--...++.++.++. ++.|..+|.++|+.+.++......
T Consensus 139 W~~~~~~~~----~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 139 WEVEVCDPK----VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEECCCGG----GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEecCCCCC----ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 888742100 000111111112667766665 789999999999999877542211
Q ss_pred ----------------------eeEEEEecCCCEEEEEccC----------------CcEEEEEeecccCCCCCCCCCcc
Q 003467 297 ----------------------VNALAAAPSHNRVFSTGSD----------------GQVILYKASCESIGPNDGLSSSE 338 (817)
Q Consensus 297 ----------------------v~~l~~s~~~~~l~~~~~d----------------g~i~iw~~~~~~~~~~~~~~~~~ 338 (817)
...+++.++...++.+..+ +.|..+|..+++
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~----------- 283 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM----------- 283 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-----------
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc-----------
Confidence 0235677777777776542 258888888776
Q ss_pred ccceEEEeeccccCCC----ccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 003467 339 VIKKWIYVGSVRAHTH----DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC 414 (817)
Q Consensus 339 ~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~~ 414 (817)
..|.... ..|.. .+....+. ... .+++ ....++.++.+|.++++|
T Consensus 284 --~~W~~~~--~~~d~~d~~~~~~p~l~-~~~-----~~G~---------------------~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 284 --AKWGYQK--TPHDEWDFAGVNQMVLT-DQP-----VNGK---------------------MTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp --EEEEEES--STTCSSCCCCCCCCEEE-EEE-----ETTE---------------------EEEEEEEECTTSEEEEEE
T ss_pred --EEEEecC--CCCcccccccCCCCEEE-ecc-----cCCc---------------------EEEEEEEeCCCcEEEEEE
Confidence 3443221 11211 11111111 000 1221 002577888999999999
Q ss_pred CCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeeeeeec---CC
Q 003467 415 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK---AS 491 (817)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~ 491 (817)
..+.+.+-......... ....+.. ..++.+... ... .. ...-..+..+ ..
T Consensus 333 ~~tG~~~w~~~~~~~~~-----w~~~~d~-~~g~p~~~~------------~~~------~~---~~~~~~~~~P~~~Gg 385 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVN-----VFKKVDL-KTGTPVRDP------------EFA------TR---MDHKGTNICPSAMGF 385 (571)
T ss_dssp TTTCCEEEEEESSTTCC-----SEEEECT-TTCSEEECG------------GGC------CC---TTCCEEEESSCTTCS
T ss_pred CCCCCEEeeecccCCcc-----ccccccc-cCCceeccc------------ccC------CC---CCCCceEECCCCccc
Confidence 88765332211100000 0000000 000000000 000 00 0000000000 11
Q ss_pred CCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC
Q 003467 492 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~ 571 (817)
..-..++++|+..++.+........+.... .. ..... ........+..+|.+. + ...+|.|+.||+.+
T Consensus 386 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~----~~---~~~g~--~~~g~~~~~~~~~~~~-~--~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 386 HNQGVDSYDPESRTLYAGLNHICMDWEPFM----LP---YRAGQ--FFVGATLAMYPGPNGP-T--KKEMGQIRAFDLTT 453 (571)
T ss_dssp SCSCBCEEETTTTEEEEEEECEEEEEEECC----CC---CCTTS--CCCCEEEEEEECTTST-T--SCCCEEEEEECTTT
T ss_pred cCCCCceECCCCCEEEEEchhccccccccc----cc---cccCC--ccccccceeccCcccc-C--CCCCCeEEEEECCC
Confidence 122457788888777775432222222211 00 00000 0001111222333321 0 02468899999999
Q ss_pred CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCe
Q 003467 572 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV 651 (817)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 651 (817)
++.+.++.. ...+....+...+..+++++.||.|+.||.++++.++.+.......-..+.+.. +++.
T Consensus 454 G~~~W~~~~------------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~-~G~~ 520 (571)
T 2ad6_A 454 GKAKWTKWE------------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF-KGKQ 520 (571)
T ss_dssp CCEEEEEEE------------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEE
T ss_pred CCEEEEecC------------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE-CCEE
Confidence 998887764 222222223335667888999999999999999999988765432122234545 5553
Q ss_pred EE
Q 003467 652 LI 653 (817)
Q Consensus 652 l~ 653 (817)
++
T Consensus 521 yv 522 (571)
T 2ad6_A 521 YI 522 (571)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 249
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.95 E-value=0.00021 Score=81.88 Aligned_cols=540 Identities=11% Similarity=0.074 Sum_probs=273.9
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
...|+||.-..+|. |-.|..+| +..||-..-+ ............|.++.-..+|. |-.++.+| +..
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~----~~~~~~~~~~~~i~~i~~d~~g~-------lWigT~~G-l~~ 86 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ----QHFTYGENNNTRIYCGVIIDNTY-------LYMGTDNG-ILV 86 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE----ECSCTTSTTSSCEEEEEEETTTE-------EEEEETTE-EEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE----EEEccCCCCCceEEEEEEcCCCc-------EEEEeCCC-eEE
Confidence 46799999988885 44556677 6677732211 00000111235688887666553 66666666 789
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
+|..+.+...........|.++.. .++ .
T Consensus 87 yd~~~~~f~~~~~~~~~~i~~i~~-~~g---------------------------------------------------~ 114 (758)
T 3ott_A 87 YNYRADRYEQPETDFPTDVRTMAL-QGD---------------------------------------------------T 114 (758)
T ss_dssp EETTTTEECCCSCCCCSCEEEEEE-ETT---------------------------------------------------E
T ss_pred EeCCCCEEECcccCCCceEEEEEe-cCC---------------------------------------------------c
Confidence 998876532211111223554433 233 6
Q ss_pred EEEEeCCCcEEEEEecCCCceeEeecc--CCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 173 VALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 173 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
|.+++.+ -|..++..++. +...... .-....|.++....+|.+.+ |+.+ -|..++..+++.. .+... ....
T Consensus 115 lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~--~~~~ 187 (758)
T 3ott_A 115 LWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLP--VHSS 187 (758)
T ss_dssp EEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCC--CCTT
T ss_pred EEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCC--Cccc
Confidence 7777766 57778876433 3211110 01134688888888887655 4444 4778887766532 22211 0000
Q ss_pred CCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccCC
Q 003467 251 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG 329 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 329 (817)
.....|.++...+++ .|-.|.. +-+..+|..+++...........|.++....+|... .|+.+ -+.+++..+...
T Consensus 188 ~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~- 263 (758)
T 3ott_A 188 QSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPL- 263 (758)
T ss_dssp CSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCC-
T ss_pred cccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcE-
Confidence 123357888877765 4555554 458889988765432222224468888888887654 44444 577777654431
Q ss_pred CCCCCCCccccceEEEeec-----cccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 330 PNDGLSSSEVIKKWIYVGS-----VRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
..... .......|.++... .++ .|..|
T Consensus 264 --------------~~~~~~~~~~~~l~~~~i~~i~~D---------~~g-------------------------~lWiG 295 (758)
T 3ott_A 264 --------------QHIIHDSRNIQSLTNNIIWNIFAD---------QEH-------------------------NIWLG 295 (758)
T ss_dssp --------------EEECCCTTCTTSCSCSCEEEEEEC---------TTC-------------------------CEEEE
T ss_pred --------------EEEEcCCCCcCcCCcCeEEEEEEc---------CCC-------------------------CEEEE
Confidence 01100 01122345666543 233 35555
Q ss_pred cCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceee
Q 003467 405 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV 484 (817)
Q Consensus 405 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~ 484 (817)
+..| +.++.... .+................+.++....+|.+-+...+.+ +.+....... ..+.
T Consensus 296 T~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl--~~~~~~~~~~-----------~~~~ 359 (758)
T 3ott_A 296 TDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGL--IRFTDPAGER-----------HDAI 359 (758)
T ss_dssp ESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEE--EEESCTTSSC-----------CCCE
T ss_pred eCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcc--eeeccccccc-----------ceeE
Confidence 5556 44433221 11100000000011122355565666665544444433 3332221100 0000
Q ss_pred eee------ecCCCCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc--cccceeEEEEecCCCEEE
Q 003467 485 QVK------SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--KLQFAHSMIFSYDSSQLI 556 (817)
Q Consensus 485 ~~~------~~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~fspd~~~l~ 556 (817)
... .-....|.++....+|++.+.. ++.+..|+... ............. ....|.++....+|.+ -
T Consensus 360 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-W 433 (758)
T 3ott_A 360 WYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT----RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL-W 433 (758)
T ss_dssp EECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTT----TEEEEEEEECCC--CBSSSEEEEEECTTSEE-E
T ss_pred EeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCC----CcEEEeecCCCcCCCCCceEEEEEEcCCCCE-E
Confidence 000 0012458888888888765544 45666666532 1211111111111 1235777777666654 4
Q ss_pred EEecCCcEEEEEccCC-----c-ee--eeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceE
Q 003467 557 IAGHDRRIYVVDVSSS-----E-LL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH 628 (817)
Q Consensus 557 ~~~~dg~i~v~d~~~~-----~-~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~ 628 (817)
+|+..+-+.++|..+. . .. ..+... ..+ ....|.++...++|++.+.++..+-|..||.++++..
T Consensus 434 igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l--~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 434 ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVH-----NGL--SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp EEESSSCEEEEEHHHHHHCCSSEEECSEEECGG-----GTC--SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred EEECCCceEEEccccccccCCcceecccccccc-----ccc--ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 4666556899986531 1 11 111110 000 2346899999999987764333445889999887654
Q ss_pred EEEec-CC-CCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCE
Q 003467 629 WFISR-LE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSS 706 (817)
Q Consensus 629 ~~~~~-~~-~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~ 706 (817)
..... .. ...+.++.... ++. |.+++.. -+..|+..+++...+.. ..++ ...|.++... + ..
T Consensus 507 ~~~~~~~~~~~~~~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~---~gl~------~~~i~~i~~~-~---g~ 570 (758)
T 3ott_A 507 KLFADELTGEKSPNYLLCDE-DGL-LWVGFHG-GVMRINPKDESQQSISF---GSFS------NNEILSMTCV-K---NS 570 (758)
T ss_dssp EECTTTSCGGGCEEEEEECT-TSC-EEEEETT-EEEEECC--CCCCBCCC---CC---------CCEEEEEEE-T---TE
T ss_pred EecCCCcCCCcccceEEECC-CCC-EEEEecC-ceEEEecCCCceEEecc---cCCC------ccceEEEEEC-C---CC
Confidence 32211 11 13577877776 665 4455654 48889988776532210 0111 1356677653 3 35
Q ss_pred EEEEcCceEEEEEcCC
Q 003467 707 VIIYSARAMCVIDFGR 722 (817)
Q Consensus 707 ~~~~~~~~~~~~d~~~ 722 (817)
+|+.+..-++.+|...
T Consensus 571 lWi~t~~Gl~~~~~~~ 586 (758)
T 3ott_A 571 IWVSTTNGLWIIDRKT 586 (758)
T ss_dssp EEEEESSCEEEEETTT
T ss_pred EEEECCCCeEEEcCCC
Confidence 7887777788877543
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.94 E-value=2.3e-07 Score=87.40 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=134.7
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC--eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeec
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG--SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVT 128 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~ 128 (817)
...+++-....-...|.|+ ++.+ ..+.+.+| .|+++|+.+|+.+..+.... ........+++.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~L------yestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~------- 97 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYF------YESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKD------- 97 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEE------EEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETT-------
T ss_pred EEEEecCCCCcccceEEEE-CCEE------EEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCC-------
Confidence 4566665445567899998 6654 66777665 89999999999998876432 222222223332
Q ss_pred cCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEE
Q 003467 129 NSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLS 208 (817)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 208 (817)
...+..-.++.+.+||..+.+.+. ++.-.. ..
T Consensus 98 ------------------------------------------~ly~ltw~~~~v~v~D~~t~~~~~---ti~~~~---eG 129 (262)
T 3nol_A 98 ------------------------------------------KIVGLTWKNGLGFVWNIRNLRQVR---SFNYDG---EG 129 (262)
T ss_dssp ------------------------------------------EEEEEESSSSEEEEEETTTCCEEE---EEECSS---CC
T ss_pred ------------------------------------------EEEEEEeeCCEEEEEECccCcEEE---EEECCC---Cc
Confidence 244455678999999998777663 332211 11
Q ss_pred EEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEE
Q 003467 209 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLL 287 (817)
Q Consensus 209 v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~ 287 (817)
..+++|++.|+....++.|.++|..+.+.+.++.....+ ..-..++.+.+. +|.+ +..-.+..|.+.|.++|+.+
T Consensus 130 ~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g---~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 130 WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG---EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT---EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC---ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 333467888877776788999999999999999864321 111334556666 6754 44446888999999999998
Q ss_pred EEeecC------------ccCeeEEEEecCCCEEEEEccC
Q 003467 288 QAHSFH------------KGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 288 ~~~~~h------------~~~v~~l~~s~~~~~l~~~~~d 315 (817)
..+... ..-.+.||++|+++.|++.|..
T Consensus 206 ~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 206 GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 887642 1234789999999988887763
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=3.6e-07 Score=102.23 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=127.0
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCC-----CCcE-EEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCC
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDP-----KSRI-SSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDL 98 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~-----~~~V-~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 98 (817)
+..|.+++.++.|.-+|..+|+..|.......... ...+ ..+++ ++ .+++.++.|+.|..+|..+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WG------DKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EB------TEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--EC------CEEEEEcCCCEEEEEECCCC
Confidence 55677777789999999999997765432211000 0000 11222 22 34888889999999999999
Q ss_pred eEEEEEeecCce-EEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEe
Q 003467 99 KQKIVLQSIDFS-IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC 177 (817)
Q Consensus 99 ~~~~~~~~~~~~-i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 177 (817)
+.+..+...... ...+..+| .+ .+..+++++
T Consensus 138 ~~~W~~~~~~~~~~~~~~~~P-----------------------------------------------~v-~~~~v~vg~ 169 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITGAP-----------------------------------------------RV-VKGKVIIGN 169 (668)
T ss_dssp CEEEEEECSCTTSSCBCCSCC-----------------------------------------------EE-ETTEEEECC
T ss_pred CEeeeeccCCCCCcceecCCC-----------------------------------------------EE-ECCEEEEeC
Confidence 988776542110 00000000 00 012555554
Q ss_pred C------CCcEEEEEecCCCceeEeeccCCc----------------------------cceEEEEEEccCCCEEEEeeC
Q 003467 178 D------DGCVRIYRITDSDELIYHRSLPRV----------------------------SGRVLSVTWSADGNMLYSGSS 223 (817)
Q Consensus 178 ~------dg~i~iwd~~~~~~~~~~~~~~~h----------------------------~~~v~~v~~s~dg~~l~s~~~ 223 (817)
. +|.|+.+|..+++.+-......+. ......++++|++..++.++.
T Consensus 170 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~ 249 (668)
T 1kv9_A 170 GGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTG 249 (668)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCC
Confidence 3 588999999887766433221110 111234788898889988887
Q ss_pred CC-------------------cEEEEECCCCceEEEEEeecCCC-CCCCceeEEEeEEecCC----eEEEEcCCCcEEEE
Q 003467 224 DG-------------------YIRSWDAKLGYEIYRITVGLGGL-GSGPELCIWSLLSLRCG----TLVSADSTGSVQFW 279 (817)
Q Consensus 224 dg-------------------~i~vwd~~~g~~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~----~l~s~~~dg~i~iw 279 (817)
++ .|..+|..+|+.+..+....... ............+..+| .++.++.+|.+.++
T Consensus 250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 76 39999999999999887421000 00011222222223366 38889999999999
Q ss_pred eCCCCeEEEEee
Q 003467 280 DSRHGTLLQAHS 291 (817)
Q Consensus 280 d~~~~~~~~~~~ 291 (817)
|..+|+.+...+
T Consensus 330 D~~tG~~l~~~~ 341 (668)
T 1kv9_A 330 DRTNGKLISAEK 341 (668)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEecccc
Confidence 999999885543
No 252
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.89 E-value=0.00043 Score=81.54 Aligned_cols=497 Identities=12% Similarity=0.053 Sum_probs=259.1
Q ss_pred EEEEECCCCCeEEEEecCCcEEEEecCCCCC---C-cEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC---CCe
Q 003467 17 VALATSADDSQVAAAREDGSLEIWLVSPGTS---G-WHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI---DGS 89 (817)
Q Consensus 17 ~~la~spdg~~la~~~~dg~i~iwd~~~~~~---~-~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~---d~~ 89 (817)
+||++-.+| +|.+|+..|.=.+|.+..... . .....++.. -++|.+++....... ...+|++++. +|+
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N--~~PI~D~~v~d~~~~--~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTN--LGPIVDMCVVDLERQ--GQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECC--CCSEEEEEEECTTSS--SCCEEEEEECCGGGCE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecC--cCCceeEEEEccCCC--CCCeEEEEECcCCCCe
Confidence 445554444 788888888888887764321 1 134455554 478999988654311 1245776654 577
Q ss_pred EEEEECCCCeE-EEEEe-ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccc
Q 003467 90 VSEWDLYDLKQ-KIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV 167 (817)
Q Consensus 90 i~vwd~~~~~~-~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (817)
+++..-.=+-. ...++ ..-..+|.+....+..+
T Consensus 405 L~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~--------------------------------------------- 439 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRET--------------------------------------------- 439 (1158)
T ss_dssp EEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSS---------------------------------------------
T ss_pred EEEEecCCCEEEEEeecCCCccEEEEEeecCCCCC---------------------------------------------
Confidence 88765332211 11221 12245666654322111
Q ss_pred ccCCEEEEEeCCCcEEEEEecCCCceeEe--eccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeec
Q 003467 168 VEDRRVALACDDGCVRIYRITDSDELIYH--RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 168 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
+.+|+.+..+.+ .|+.+. ++.+... .-|......+.+-.+ .+ ..++=.... .|++.+...+..+.....
T Consensus 440 --~~yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~~~~~TL~~~~l-~~-~~ivQVt~~-~Irli~~~~~~~~~~w~~-- 510 (1158)
T 3ei3_A 440 --DDTLVLSFVGQT-RVLMLN-GEEVEETELMGFVDDQQTFFCGNV-AH-QQLIQITSA-SVRLVSQEPKALVSEWKE-- 510 (1158)
T ss_dssp --CCEEEEEETTEE-EEEEEE-TTEEEEECCTTCCSSSCEEEEEEE-TT-TEEEEEESS-CEEEEESSSCCEEEEECC--
T ss_pred --CCEEEEECCCCe-EEEEEe-CCcccccccccccCCCCcEEEEEc-CC-CeEEEEecC-EEEEEECCCCeEEEEEEC--
Confidence 137777666665 666664 2233221 111111223333332 22 345544443 678888765556655542
Q ss_pred CCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEE--EEeecCccCeeEEEEecC------CCEEEEEcc-CC
Q 003467 246 GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL--QAHSFHKGDVNALAAAPS------HNRVFSTGS-DG 316 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s~~------~~~l~~~~~-dg 316 (817)
.....|...+.. +.+++.+. ++.+.++++..+++. ... .-...|.|+++.|. ++++++|.. |+
T Consensus 511 -----p~~~~I~~As~n-~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~ 582 (1158)
T 3ei3_A 511 -----PQAKNISVASCN-SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDI 582 (1158)
T ss_dssp -----TTCCCCCEEEEC-SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTT
T ss_pred -----CCCCEEEEEEeC-CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCC
Confidence 223345555544 34555554 577888877655432 222 23568999999863 368899886 99
Q ss_pred cEEEEEeecccCCCCCCCCCccccceEEEee--ccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccc
Q 003467 317 QVILYKASCESIGPNDGLSSSEVIKKWIYVG--SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA 394 (817)
Q Consensus 317 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
+|+++++.+.+ .+. .+.. ....+++.+.. -
T Consensus 583 tv~I~sL~~l~-----------------~~~~~~L~~-~~~p~si~l~~---------~--------------------- 614 (1158)
T 3ei3_A 583 SARILKLPSFE-----------------LLHKEMLGG-EIIPRSILMTT---------F--------------------- 614 (1158)
T ss_dssp EEEEEETTTCC-----------------EEEEEECCS-SCCEEEEEEEE---------E---------------------
T ss_pred EEEEEECCCCC-----------------eEEEEECCC-CCCCcEEEEEE---------e---------------------
Confidence 99999997543 111 1111 12233343320 0
Q ss_pred cCCCcEEEEecCCCeEEEEeCCcc--cccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccCC
Q 003467 395 HLGVPMLISAGDDTKLFAYCANEF--TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 472 (817)
Q Consensus 395 ~~~~~~l~s~~~dg~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~ 472 (817)
.+..+|..|-.||.+..+.++.. .................. .+.......++++++...-++.-. +.
T Consensus 615 -~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~---~~~~~~~~~V~a~s~rp~liy~~~-~~------ 683 (1158)
T 3ei3_A 615 -ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLR---TFRSLSTTNVFACSDRPTVIYSSN-HK------ 683 (1158)
T ss_dssp -TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEE---EEESSSCEEEEEESSSCEEEEESS-SS------
T ss_pred -CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEE---EEeeCCceeEEEECCCCEEEEEcC-Cc------
Confidence 02248899999998877765431 111111111111110000 111111223444444433232211 00
Q ss_pred CCCCCCccceeeeeeecCCCCeEEEEecCCC--cEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec
Q 003467 473 SSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 550 (817)
Q Consensus 473 ~~~g~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 550 (817)
-.+..+... .-.....|+... .-++..+++.++++.++.. ..|.+++..+.. .++.++++|
T Consensus 684 --------l~~s~l~~~--~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~----~~~~~~~ipL~~---Tprri~y~~ 746 (1158)
T 3ei3_A 684 --------LVFSNVNLK--EVNYMCPLNSDGYPDSLALANNSTLTIGTIDEI----QKLHIRTVPLYE---SPRKICYQE 746 (1158)
T ss_dssp --------EEEEEBSSS--CCCEEEEECCSSSTTEEEEECSSCEEEEEECCS----SSEEEEEEECSS---EEEEEEEEG
T ss_pred --------eEEeccChH--HhceEeccCcccCCCcEEEEcCCceEEEEeccc----CCeeEEEEeCCC---CceEEEEcC
Confidence 001111111 111233344322 3455666777999998642 345666655543 688999999
Q ss_pred CCCEEEEEecC-------------------------------------------------CcEEEEEccCCceeeeeccC
Q 003467 551 DSSQLIIAGHD-------------------------------------------------RRIYVVDVSSSELLHTFTPC 581 (817)
Q Consensus 551 d~~~l~~~~~d-------------------------------------------------g~i~v~d~~~~~~~~~~~~~ 581 (817)
+.+.++++..+ +.|+++|..+++.+..++-.
T Consensus 747 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~ 826 (1158)
T 3ei3_A 747 VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL 826 (1158)
T ss_dssp GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC
Confidence 88876655421 23566666666665555431
Q ss_pred cccccccCCCCCCceeEEE---EccC-CCEEEEEe----------CCCcEEEEECCCcceEEEEecCCCCCeEEEEecCC
Q 003467 582 REEHDREIQPSEPPITKMF---TSSD-GQWLAAVN----------CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ 647 (817)
Q Consensus 582 ~~~~~~~~~~~~~~i~~l~---~s~d-g~~la~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~ 647 (817)
....+.+++ |..+ ..+|++|. ..|.|++|++...+........-.++|++++--
T Consensus 827 ----------~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-- 894 (1158)
T 3ei3_A 827 ----------QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-- 894 (1158)
T ss_dssp ----------TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--
T ss_pred ----------CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--
Confidence 234455544 4333 46888886 358899999976554433322234688888754
Q ss_pred CCCeEEEEecCCeEEEEEcCCCc
Q 003467 648 NNNVLIITTSSNQVYVFDVEAKQ 670 (817)
Q Consensus 648 d~~~l~~~~~d~~i~vwd~~~~~ 670 (817)
.| +|+++ ..++|++|++..++
T Consensus 895 ~g-~Lla~-ig~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 895 NG-KLLAS-INSTVRLYEWTTEK 915 (1158)
T ss_dssp TT-EEEEE-ETTEEEEEEECTTS
T ss_pred CC-EEEEE-cCCEEEEEECCCCc
Confidence 35 44443 35789999998764
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.87 E-value=8.8e-07 Score=96.84 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=80.4
Q ss_pred ecCCC---EEEEEecCCcEEEEEccCCceeeeeccCccc------c-c--c-----cCC---CCCCc-----------ee
Q 003467 549 SYDSS---QLIIAGHDRRIYVVDVSSSELLHTFTPCREE------H-D--R-----EIQ---PSEPP-----------IT 597 (817)
Q Consensus 549 spd~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------~-~--~-----~~~---~~~~~-----------i~ 597 (817)
.+||+ .++.++.+|.++++|..+|+.+..++..... + . . ... ..... -.
T Consensus 310 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 389 (571)
T 2ad6_A 310 PVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQG 389 (571)
T ss_dssp EETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSC
T ss_pred ccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCC
Confidence 35784 5777888999999999999988766532100 0 0 0 000 00000 02
Q ss_pred EEEEccCCCEEEEEe-------------------------------------CCCcEEEEECCCcceEEEEecCCCCCeE
Q 003467 598 KMFTSSDGQWLAAVN-------------------------------------CFGDVYIFNLEIQRQHWFISRLEGASVT 640 (817)
Q Consensus 598 ~l~~s~dg~~la~~~-------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~i~ 640 (817)
.++++|+..+|.+.. .+|.|..||+.+++..|..+... .+.
T Consensus 390 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~ 467 (571)
T 2ad6_A 390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAW 467 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCC
T ss_pred CceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--Ccc
Confidence 467888888776653 35789999999999999886532 233
Q ss_pred EEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 641 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 641 ~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
...+.. .+.++++++.|+.|+.||.++++.
T Consensus 468 ~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 468 GGTLYT-KGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp SBCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceeEEE-CCCEEEEEcCCCeEEEEECCCCCE
Confidence 333333 456788899999999999999986
No 254
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.83 E-value=0.00035 Score=76.90 Aligned_cols=500 Identities=11% Similarity=-0.004 Sum_probs=257.9
Q ss_pred CceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe-eCCCeEE
Q 003467 14 SPVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-SIDGSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-~~d~~i~ 91 (817)
....+|+|.+++..|..+ ..++.|..+++..... ...+... .....+|++.+.+.. |+.+ ...+.|.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~----~~v~~~g-~~~P~GlAvD~~~~~------LY~tD~~~~~I~ 105 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL----EHVVEFG-LDYPEGMAVDWLGKN------LYWADTGTNRIE 105 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSS-CSCCCEEEEETTTTE------EEEEETTTTEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc----EEEEeCC-CCCcceEEEEeCCCE------EEEEECCCCEEE
Confidence 357799999977766655 4568899998876542 3333322 346778999877654 5444 4567899
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+.+++.......+......-..+++.|...
T Consensus 106 v~~~dG~~~~~l~~~~l~~P~~iavdp~~G-------------------------------------------------- 135 (628)
T 4a0p_A 106 VSKLDGQHRQVLVWKDLDSPRALALDPAEG-------------------------------------------------- 135 (628)
T ss_dssp EEETTSTTCEEEECSSCCCEEEEEEETTTT--------------------------------------------------
T ss_pred EEecCCCcEEEEEeCCCCCcccEEEccCCC--------------------------------------------------
Confidence 999876543333323345567899998542
Q ss_pred EEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCC
Q 003467 172 RVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 172 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.|.... ..+.|...++...... .+...-.....|++++++..|+.+.. .+.|...|+..... ..+..
T Consensus 136 ~lY~tD~g~~~~I~r~~~dG~~~~----~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~----- 205 (628)
T 4a0p_A 136 FMYWTEWGGKPKIDRAAMDGSERT----TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD----- 205 (628)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE-----
T ss_pred eEEEeCCCCCCEEEEEeCCCCceE----EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec-----
Confidence 343333 2466776776533322 11123456789999998888877755 56899999865433 33331
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecccC
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI 328 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 328 (817)
.-.....+++..+..+++-...+.|...|..+|+....+.........+........- +. +...
T Consensus 206 ---~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~---~~---------n~C~- 269 (628)
T 4a0p_A 206 ---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQS---GW---------NECA- 269 (628)
T ss_dssp ---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSC---CC---------CTTT-
T ss_pred ---cCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccc---cc---------eEec-
Confidence 2223457777654455565567889888987777666665433334444332211100 00 0000
Q ss_pred CCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEecCCC
Q 003467 329 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT 408 (817)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 408 (817)
......++. ++.... ..-.|. + |.+.........+. ...++|+.+. ..
T Consensus 270 ------~~ng~C~~~-C~~~~~---~~~~C~--C---------~~g~~l~~d~~~C~----------~~~~~Ll~s~-~~ 317 (628)
T 4a0p_A 270 ------SSNGHCSHL-CLAVPV---GGFVCG--C---------PAHYSLNADNRTCS----------APTTFLLFSQ-KS 317 (628)
T ss_dssp ------TTGGGCSSE-EEEETT---TEEEEE--C---------STTCEECTTSSCEE----------CCSSEEEEEE-TT
T ss_pred ------cCCCCcchh-hhcCCC---CCeeEE--c---------CCCcEecccCCcCc----------cccceeeeec-cc
Confidence 000000000 111000 001110 0 11110000000000 0112444333 34
Q ss_pred eEEEEeCCcccccCCcccCCCCCCCceeeecceeecCC-eEEEEEeCCeEEEEEecccCCcccCCCCCCCCccceeee-e
Q 003467 409 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT-SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ-V 486 (817)
Q Consensus 409 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 486 (817)
.|+-..+....... . ..+.. ....+..+.+++. +.+.++....-.|+++...... ....+.. .
T Consensus 318 ~i~~i~l~~~~~~~--~--~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~----------~~~v~~~~~ 382 (628)
T 4a0p_A 318 AINRMVIDEQQSPD--I--ILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ----------GFTVVVSSV 382 (628)
T ss_dssp EEEEECCCTTCCCC--E--ECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEEC---
T ss_pred eEEEEecccccCce--E--EEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC----------ceEEEEccc
Confidence 45554444221100 0 01111 1223446777764 4444444433333333221100 0001111 0
Q ss_pred ee-cCCCCeEEEEecCCCcEEEEE--cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEec-CC
Q 003467 487 KS-KASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR 562 (817)
Q Consensus 487 ~~-~~~~~i~~~~~s~~g~~la~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~-dg 562 (817)
.. ..-..+..+|+...++.|..+ ..+.|.+.+++. ...-.+ +.......+.+++.|...+|+.... ..
T Consensus 383 ~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G----~~~~~l----~~~~l~~Pr~iavdp~~g~ly~tD~g~~ 454 (628)
T 4a0p_A 383 PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG----RSVGVV----LKGEQDRPRAVVVNPEKGYMYFTNLQER 454 (628)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CEEEEE----EECTTCCEEEEEEETTTTEEEEEEEETT
T ss_pred ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC----CeEEEE----EeCCCCceeeEEEecCCCeEEEeecCCC
Confidence 00 122457899999987766554 346666666542 211011 1123346889999995555554443 22
Q ss_pred --cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-CCcEEEEECCCcceEEEEecCCCCCe
Q 003467 563 --RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 563 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
.|...+++ |.....+... .-...+.|+++++++.|..++. .+.|..+++++.... .+.......+
T Consensus 455 ~~~I~r~~~d-G~~~~~l~~~----------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~-~~~~~~~~~P 522 (628)
T 4a0p_A 455 SPKIERAALD-GTEREVLFFS----------GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI-VLEDSNILQP 522 (628)
T ss_dssp EEEEEEEETT-SCSCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCE
T ss_pred CCeEEEEeCC-CCCcEEEEec----------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE-EEEcCCCCCc
Confidence 56666665 4433333321 2456799999999888887765 478999999765543 3332223467
Q ss_pred EEEEecCCCCCeEEEEe-cCCeEEEEEcCCCc
Q 003467 640 TAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQ 670 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~-~d~~i~vwd~~~~~ 670 (817)
.+|+... ..|..+. ..+.|...|..+++
T Consensus 523 ~glav~~---~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 523 VGLTVFE---NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEEEEET---TEEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEEC---CEEEEEECCCCeEEEEECcCCC
Confidence 7888753 3555555 45578888887665
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=4.1e-07 Score=85.55 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=133.8
Q ss_pred EEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccC
Q 003467 51 CQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 51 ~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
...+++-....-...|.|+ ++.+ .++.+.+|.|+++|+++|+.+..+ - ..........+++.
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~L------y~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~--------- 106 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHF------FESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGE--------- 106 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEE------EEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSS---------
T ss_pred EEEEEcCCCccccceEEEE-CCEE------EEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCC---------
Confidence 4556654444556899997 3444 677788899999999999988877 2 23333322333442
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEE
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT 210 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 210 (817)
...+....++.+.+||..+.+.+. ++... ..-..++
T Consensus 107 ----------------------------------------~Ly~ltw~~~~v~V~D~~Tl~~~~---ti~~~-~eGwGLt 142 (268)
T 3nok_A 107 ----------------------------------------RLYQLTWTEGLLFTWSGMPPQRER---TTRYS-GEGWGLC 142 (268)
T ss_dssp ----------------------------------------CEEEEESSSCEEEEEETTTTEEEE---EEECS-SCCCCEE
T ss_pred ----------------------------------------EEEEEEccCCEEEEEECCcCcEEE---EEeCC-CceeEEe
Confidence 255556678999999998776663 33221 1112333
Q ss_pred EccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeEEEE
Q 003467 211 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTLLQA 289 (817)
Q Consensus 211 ~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~ 289 (817)
+|++.|+....++.|.++|..+.+.+.++.....+ ..-..++.+.|. +|.| +..-.+..|.+.|.++|+.+..
T Consensus 143 --~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g---~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 143 --YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG---QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp --EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred --cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC---cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 57888888777889999999999999999865322 112244667776 6754 4444678899999999999888
Q ss_pred eecC------------c-cCeeEEEEecCCCEEEEEcc
Q 003467 290 HSFH------------K-GDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 290 ~~~h------------~-~~v~~l~~s~~~~~l~~~~~ 314 (817)
+... . .-.+.||++|+++.|++.|.
T Consensus 217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7542 1 24578999999888887665
No 256
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.82 E-value=0.00053 Score=78.48 Aligned_cols=529 Identities=10% Similarity=0.125 Sum_probs=280.6
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
..|.++....+| .|-+|..+| +..||..+.+. .. ........|.++.. .+|. |..++.+ -+..+
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f----~~-~~~~~~~~i~~i~~-~~g~-------lWigt~~-Gl~~~ 126 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRY----EQ-PETDFPTDVRTMAL-QGDT-------LWLGALN-GLYTY 126 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEE----CC-CSCCCCSCEEEEEE-ETTE-------EEEEETT-EEEEE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEE----EC-cccCCCceEEEEEe-cCCc-------EEEEcCC-cceeE
Confidence 569998887777 455666666 88999876531 11 11111345777754 3443 6666666 58889
Q ss_pred ECCCCeEEEEEe-----ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 94 DLYDLKQKIVLQ-----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 94 d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
|..+++.. .+. .....|.++....++
T Consensus 127 ~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g------------------------------------------------ 157 (758)
T 3ott_A 127 QLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN------------------------------------------------ 157 (758)
T ss_dssp ETTTCCEE-EECHHHHCCSCSCEEEEEECTTC------------------------------------------------
T ss_pred eCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC------------------------------------------------
Confidence 98776533 231 112456777666655
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCC----ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPR----VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
.|.+|+.+| |..++..++. +... .+.. ....|.++...+++..|-.|+. +-|..+|..+++... +..
T Consensus 158 ---~lWigt~~G-l~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~- 228 (758)
T 3ott_A 158 ---QIYVGTYNG-LCRYIPSNGK-FEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEA- 228 (758)
T ss_dssp ---CEEEEETTE-EEEEETTTTE-EEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEE-
T ss_pred ---CEEEEeCCC-HhhCccCCCc-eEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccC-
Confidence 566666654 6677765332 2111 1111 1235888988877775555554 458889987765432 221
Q ss_pred cCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee-------cCccCeeEEEEecCCCEEEEEccCCc
Q 003467 245 LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-------FHKGDVNALAAAPSHNRVFSTGSDGQ 317 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~~~~~dg~ 317 (817)
-....|.++...++|.|..|+.+ -+.+++..+++...... .....|.++....+|. |..|+..|
T Consensus 229 ------l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G- 299 (758)
T 3ott_A 229 ------FHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG- 299 (758)
T ss_dssp ------EEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-
T ss_pred ------CCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-
Confidence 12356888888888877777754 58888887655322211 1234588888888776 45555556
Q ss_pred EEEEEeecccCCCCCCCCCccccceEEEeec--c--ccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccc
Q 003467 318 VILYKASCESIGPNDGLSSSEVIKKWIYVGS--V--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW 393 (817)
Q Consensus 318 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
+.++... .. +..... . ......|.++... .++
T Consensus 300 l~~~~~~-~~---------------~~~~~~~~~~~~~~~~~v~~i~~D---------~~g------------------- 335 (758)
T 3ott_A 300 ISLSRYN-SA---------------LQFIPISQITGTGDGNQFYSLFRD---------SKG------------------- 335 (758)
T ss_dssp EEEECCC-C----------------CEEEEHHHHSCSCCCCBEEEEEEC---------TTC-------------------
T ss_pred ccccccC-Cc---------------eeEEecccCCCCCCCceEEEEEEc---------CCC-------------------
Confidence 5443221 11 001110 0 0112346666543 333
Q ss_pred ccCCCcEEEEecCCCeEEEEeCCccc--ccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEecccCCcccC
Q 003467 394 AHLGVPMLISAGDDTKLFAYCANEFT--KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR 471 (817)
Q Consensus 394 ~~~~~~~l~s~~~dg~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~ 471 (817)
.|..|+.+| +..++..+.. .+........+.......+.++....++.+-+...+.+..++.....
T Consensus 336 ------~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~----- 403 (758)
T 3ott_A 336 ------FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQ----- 403 (758)
T ss_dssp ------CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTE-----
T ss_pred ------CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCc-----
Confidence 455555554 5566554321 11000000000111123455666666665444445556555543321
Q ss_pred CCCCCCCccceeeeeee------cCCCCeEEEEecCCCcEEEEEcCCceEEEEeecC--CCCCceEEE-eeecCC-c-cc
Q 003467 472 SSSGGHASTSLLVQVKS------KASRKIICSTISNSGMLFAYSDHVKPSLFELKKG--KVGQGEWII-NKRQLP-R-KL 540 (817)
Q Consensus 472 ~~~~g~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~--~~~~~~~~~-~~~~~~-~-~~ 540 (817)
+..... .....|.++....+|++.+....+.+.+|+.... ..... +.. ...... + ..
T Consensus 404 -----------~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 404 -----------FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQ-YIAEQNYSVHNGLSG 471 (758)
T ss_dssp -----------EEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSE-EECSEEECGGGTCSC
T ss_pred -----------EEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcc-eeccccccccccccc
Confidence 111110 0124578888888888766555566777764320 00011 100 000000 1 11
Q ss_pred cceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEE
Q 003467 541 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF 620 (817)
Q Consensus 541 ~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw 620 (817)
..|.++...++|...+.++..+-|..+|..+++........ + .....+.++....+|++.+.. ..| +..|
T Consensus 472 ~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~-------~-~~~~~~~~i~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 472 MFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADE-------L-TGEKSPNYLLCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp SCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTT-------S-CGGGCEEEEEECTTSCEEEEE-TTE-EEEE
T ss_pred ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCC-------c-CCCcccceEEECCCCCEEEEe-cCc-eEEE
Confidence 25888888888887764444445889998776544322110 0 013467888888888866544 455 8888
Q ss_pred ECCCcceEEE-EecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEEC
Q 003467 621 NLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFS 699 (817)
Q Consensus 621 d~~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~ 699 (817)
+.++.+.... ........|.++... ++ .|..++..| |..||.++.+...+. ++ ...+.+..+.
T Consensus 542 ~~~~~~~~~~~~~gl~~~~i~~i~~~--~g-~lWi~t~~G-l~~~~~~~~~~~~~~------~~------~~~~~~~~~~ 605 (758)
T 3ott_A 542 NPKDESQQSISFGSFSNNEILSMTCV--KN-SIWVSTTNG-LWIIDRKTMDARQQN------MT------NKRFTSLLFD 605 (758)
T ss_dssp CC--CCCCBCCCCC---CCEEEEEEE--TT-EEEEEESSC-EEEEETTTCCEEEC--------C------CCCCSEEEEE
T ss_pred ecCCCceEEecccCCCccceEEEEEC--CC-CEEEECCCC-eEEEcCCCceeEEec------CC------CCceeeeEEE
Confidence 8776653211 111223467777653 44 566666665 888999887653211 11 1122233443
Q ss_pred -CCCCCCEEEEEcCceEEEEEcCC
Q 003467 700 -PSPSSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 700 -p~~~~~~~~~~~~~~~~~~d~~~ 722 (817)
++ ..+++-+.+-++.++...
T Consensus 606 ~~~---G~l~fG~~~Gl~~f~p~~ 626 (758)
T 3ott_A 606 PKE---DCVYLGGADGFGISHSNL 626 (758)
T ss_dssp TTT---TEEEEECBSEEEEEEC--
T ss_pred CCC---CcEEEecCCceEEEChhh
Confidence 44 459999999999998765
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=7.9e-06 Score=89.36 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccce------EEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR------VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG 244 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~------v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~ 244 (817)
..+++++.++.|+-+|..+++.+-....-...... -..+++ .+..|+.++.|+.|..+|..+|+.+.+....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 46666666455888998888765322211111000 011222 3567888889999999999999999888742
Q ss_pred cCCCCCCCceeEE-EeEEecC---C--eEEEEc------CCCcEEEEeCCCCeEEEEee
Q 003467 245 LGGLGSGPELCIW-SLLSLRC---G--TLVSAD------STGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 245 ~~~~~~~~~~~v~-~v~~~~~---~--~l~s~~------~dg~i~iwd~~~~~~~~~~~ 291 (817)
.... ...+. +.....+ | .++++. .+|.|.-+|..+|+.+.+..
T Consensus 147 ~~~~----~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 147 DHGA----GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp CGGG----TCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCc----CcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 1100 00111 1111222 2 565654 37899999999999987664
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=2.9e-06 Score=92.50 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCeEEEEcC-CCcEEEEeC-CCCeEEEEeecCccC-----------eeEEEEecCCCE----EEEEccCCcEEEEEeecc
Q 003467 264 CGTLVSADS-TGSVQFWDS-RHGTLLQAHSFHKGD-----------VNALAAAPSHNR----VFSTGSDGQVILYKASCE 326 (817)
Q Consensus 264 ~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~s~~~~~----l~~~~~dg~i~iw~~~~~ 326 (817)
++.+..++. ++.|.-+|. .+|+.+.++...... ...++++|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 677777777 899999999 899999887643211 123566544444 888989999999999888
Q ss_pred c
Q 003467 327 S 327 (817)
Q Consensus 327 ~ 327 (817)
+
T Consensus 142 ~ 142 (599)
T 1w6s_A 142 E 142 (599)
T ss_dssp C
T ss_pred C
Confidence 7
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=1.8e-06 Score=82.60 Aligned_cols=204 Identities=10% Similarity=-0.052 Sum_probs=134.9
Q ss_pred ceEEEEECCCCCeEEEEec--CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEE
Q 003467 15 PVVALATSADDSQVAAARE--DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVS 91 (817)
Q Consensus 15 ~I~~la~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~ 91 (817)
....|+|+||+.+.++.+. ++.|.+.|+.+++ ....+.-........+++. ++. |+.+. .++.|.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~----v~~~i~l~~~~fgeGi~~~--g~~------lyv~t~~~~~v~ 89 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK----VENIHKMDDSYFGEGLTLL--NEK------LYQVVWLKNIGF 89 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC----EEEEEECCTTCCEEEEEEE--TTE------EEEEETTCSEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC----EEEEEecCCCcceEEEEEe--CCE------EEEEEecCCEEE
Confidence 3689999999755554443 5789999999998 3555442212233455554 443 55554 578999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
++|..+++.+.++...... ...+++|+.
T Consensus 90 viD~~t~~v~~~i~~g~~~--g~glt~Dg~-------------------------------------------------- 117 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKD--GWGLATDGK-------------------------------------------------- 117 (266)
T ss_dssp EEETTTTEEEEEEECCSSS--CCEEEECSS--------------------------------------------------
T ss_pred EEECCCCcEEEEEECCCCC--eEEEEECCC--------------------------------------------------
Confidence 9999999999888632111 233555663
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCC--ccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEee-cC--
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG-LG-- 246 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~-~~-- 246 (817)
.++++..++.|.++|..+.+.......-.. .-..+..+.|. +|...+....++.|.+-|..+++.+..+... ..
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 455555788999999987666533222111 11246788888 7755555545789999999999999999853 10
Q ss_pred --CCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCC
Q 003467 247 --GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 247 --~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~ 283 (817)
............++|+|++ .++++...+.|.+.++..
T Consensus 197 ~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 0001122467899999998 578888888888887754
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.78 E-value=2e-07 Score=98.57 Aligned_cols=209 Identities=9% Similarity=-0.021 Sum_probs=144.5
Q ss_pred CCCCeEEEEec-CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEE-e-ecCCCCCCCceEEEee--------------
Q 003467 23 ADDSQVAAARE-DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVW-C-HAGKMGLPGGRLFSSS-------------- 85 (817)
Q Consensus 23 pdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~-s-~~~~~~~~~~~l~s~~-------------- 85 (817)
+||++|.+... ++.|.+.|+.+.+ +...+.-.....+..+++ + |++++ +++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~----~~~ii~ip~g~~phg~~~~~~p~~~~------v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK----CDAILEIPNAKGIHGLRPQKWPRSNY------VFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE----EEEEEECSSCCSEEEEEECCSSBCSE------EEEEECSCEESSCSSSSTT
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce----EeeEEeCCCCCCCcceeeeecCCCcE------EEEecccccccCCCCcccc
Confidence 48999888754 5569999999876 455332222356889998 5 99987 88774
Q ss_pred ----CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcc
Q 003467 86 ----IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE 161 (817)
Q Consensus 86 ----~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
.++.+.+.|.++.+...++.--+ .-..++++|+|.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk---------------------------------------- 207 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGK---------------------------------------- 207 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSS----------------------------------------
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCC----------------------------------------
Confidence 34689999999999888877433 446788888883
Q ss_pred ccccccccCCEEEEEeCCC---------------cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCc
Q 003467 162 LHEQSVVEDRRVALACDDG---------------CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 226 (817)
Q Consensus 162 ~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~ 226 (817)
++++.+.+. .|.+.|..... .+.++|+++.. +.
T Consensus 208 ----------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------------~~v~~Gk~~~i----~~ 255 (595)
T 1fwx_A 208 ----------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------------KAIAAGDYQEL----NG 255 (595)
T ss_dssp ----------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------------HHHHHTCSEEE----TT
T ss_pred ----------EEEEEecCcccCcchhhccccccceEEEeecccee------------------EeccCCCeeEE----Cc
Confidence 666666543 24444432111 12345554443 46
Q ss_pred EEEEECCC--Cce-EEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEEeCCCCe------------EEEE
Q 003467 227 IRSWDAKL--GYE-IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT------------LLQA 289 (817)
Q Consensus 227 i~vwd~~~--g~~-~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iwd~~~~~------------~~~~ 289 (817)
|.|.|..+ ++. +..+..+ ....++.++||| .++++..+.+|.++|+.+.+ .+..
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg---------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIA---------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEE---------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred EEEEeCcccCCceeEEEEecC---------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 99999998 656 6666642 245678999999 35666678899999999653 3344
Q ss_pred eecCccCeeEEEEecCCCEEEE-EccCCcEEEEEeec
Q 003467 290 HSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASC 325 (817)
Q Consensus 290 ~~~h~~~v~~l~~s~~~~~l~~-~~~dg~i~iw~~~~ 325 (817)
+.. ......++|+++| ++++ .-.|++|..|++..
T Consensus 327 v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 432 3567889999999 5554 55699999999987
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=3.4e-06 Score=78.75 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=132.4
Q ss_pred EEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC--CeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceee
Q 003467 50 HCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID--GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAV 127 (817)
Q Consensus 50 ~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~ 127 (817)
..+.+++-....-...|.|++ +.+ ..+.+.+ +.|+++|+.+|+.+..+.-... .......+.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~L------yestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~------ 75 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHL------YESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRD------ 75 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEE------EEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETT------
T ss_pred EEEEEcCCCCccccccEEEEC-CEE------EEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCC------
Confidence 356666655566788999986 443 5566664 4899999999999988763322 22222222232
Q ss_pred ccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEE
Q 003467 128 TNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL 207 (817)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 207 (817)
...+....++.+.+||..+.+.+ .++.... .=.
T Consensus 76 -------------------------------------------~ly~ltw~~~~v~v~D~~tl~~~---~ti~~~~-~Gw 108 (243)
T 3mbr_X 76 -------------------------------------------RLIQLTWRNHEGFVYDLATLTPR---ARFRYPG-EGW 108 (243)
T ss_dssp -------------------------------------------EEEEEESSSSEEEEEETTTTEEE---EEEECSS-CCC
T ss_pred -------------------------------------------EEEEEEeeCCEEEEEECCcCcEE---EEEeCCC-Cce
Confidence 24555667899999999876665 3333211 112
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCCCcEEEEeCCCCeE
Q 003467 208 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADSTGSVQFWDSRHGTL 286 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 286 (817)
.++ +|++.|+....++.|.++|..+.+.+.++.....+ ..-..++.+.+. +|.+ +..-.+..|.+.|.++|+.
T Consensus 109 glt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g---~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 109 ALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG---RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp EEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT---EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred EEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC---cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 333 56777777667889999999999999999864322 111344556665 6654 4444677899999999999
Q ss_pred EEEeecC------------c-cCeeEEEEecCCCEEEEEcc
Q 003467 287 LQAHSFH------------K-GDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 287 ~~~~~~h------------~-~~v~~l~~s~~~~~l~~~~~ 314 (817)
+..+... . .-.+.||++|+++.|++.|.
T Consensus 183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 8887632 1 23577999999988888765
No 262
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=7.7e-06 Score=80.26 Aligned_cols=232 Identities=9% Similarity=-0.022 Sum_probs=141.5
Q ss_pred CCeEEEEecCCcEEEEecCCCCCCc-EEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEEEEECCCCeEEE
Q 003467 25 DSQVAAAREDGSLEIWLVSPGTSGW-HCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVSEWDLYDLKQKI 102 (817)
Q Consensus 25 g~~la~~~~dg~i~iwd~~~~~~~~-~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~ 102 (817)
|.+|..+.. +.|..+++....... .....+... ...+.+++|++++.. |+.+. .++.|.++++.++....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~~------ly~~d~~~~~I~~~~~~g~~~~~ 72 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKV------VYWTDISEPSIGRASLHGGEPTT 72 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTTE------EEEEETTTTEEEEEESSSCCCEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCCE------EEEEECCCCEEEEEecCCCCcEE
Confidence 456666654 579999987654210 001111111 246789999997654 55544 56899999998765443
Q ss_pred EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcE
Q 003467 103 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV 182 (817)
Q Consensus 103 ~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 182 (817)
.+.........+++++++.. ..++-...+.|
T Consensus 73 ~~~~~~~~p~~ia~d~~~~~-------------------------------------------------lyv~d~~~~~I 103 (267)
T 1npe_A 73 IIRQDLGSPEGIALDHLGRT-------------------------------------------------IFWTDSQLDRI 103 (267)
T ss_dssp EECTTCCCEEEEEEETTTTE-------------------------------------------------EEEEETTTTEE
T ss_pred EEECCCCCccEEEEEecCCe-------------------------------------------------EEEEECCCCEE
Confidence 33322246788999987532 34444556789
Q ss_pred EEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC---CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEe
Q 003467 183 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 259 (817)
Q Consensus 183 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~---dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v 259 (817)
.++++....... ...........++++|++..|+.+.. .+.|..+++. |.....+.. ........+
T Consensus 104 ~~~~~~g~~~~~---~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~-------~~~~~P~gi 172 (267)
T 1npe_A 104 EVAKMDGTQRRV---LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQ-------DNLGLPNGL 172 (267)
T ss_dssp EEEETTSCSCEE---EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEEC-------TTCSCEEEE
T ss_pred EEEEcCCCCEEE---EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEE-------CCCCCCcEE
Confidence 998886332211 11112245689999997776665554 3688888875 444433331 123457889
Q ss_pred EEecCC-e-EEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc-cCCcEEEEEeeccc
Q 003467 260 LSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYKASCES 327 (817)
Q Consensus 260 ~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 327 (817)
++++++ . +++-...+.|.++|.........+.. ......++.. +..|+.+. ..+.|..++..+++
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 999975 4 45556678899999985443333332 2334566654 45566554 56889999987765
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=9.2e-06 Score=79.69 Aligned_cols=219 Identities=12% Similarity=0.037 Sum_probs=139.1
Q ss_pred ceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe-eCCCeEEE
Q 003467 15 PVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-SIDGSVSE 92 (817)
Q Consensus 15 ~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-~~d~~i~v 92 (817)
.+.+++++|++..|.++ ..++.|.+++..+... ...+... .....++++++++.. |+.+ ...+.|.+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~-~~~p~~ia~d~~~~~------lyv~d~~~~~I~~ 105 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----TTIIRQD-LGSPEGIALDHLGRT------IFWTDSQLDRIEV 105 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----EEEECTT-CCCEEEEEEETTTTE------EEEEETTTTEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----EEEEECC-CCCccEEEEEecCCe------EEEEECCCCEEEE
Confidence 45689999977666655 4568899999876542 2333322 357899999997654 5544 45678999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
++++.................++++|++. .
T Consensus 106 ~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------------------------------------------------~ 135 (267)
T 1npe_A 106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------------------------------------------------N 135 (267)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEETTTT--------------------------------------------------E
T ss_pred EEcCCCCEEEEEECCCCCccEEEEeeCCC--------------------------------------------------E
Confidence 99875432222222224567899998652 4
Q ss_pred EEEEeC---CCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCC
Q 003467 173 VALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 173 l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
|..+.. .+.|..+++.. ...... ..........+++++++..|+.+.. .+.|.++|...+.....+.
T Consensus 136 lyv~~~~~~~~~I~~~~~dg-~~~~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------ 206 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDG-TNRRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------ 206 (267)
T ss_dssp EEEEECCSSSCEEEEEETTS-CCCEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------
T ss_pred EEEEECCCCCcEEEEEecCC-CCcEEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec------
Confidence 444432 36788888753 222111 1122346789999998877766554 5789999987543322222
Q ss_pred CCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCCeEEEEeecCc-cCeeEEEEecCCC
Q 003467 249 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHN 307 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~ 307 (817)
.. .....++.. ++ .+++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 207 --~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 207 --GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp --CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred --CC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 11 123455654 45 45555567899999999999988886543 2477888888864
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.73 E-value=1.1e-06 Score=82.63 Aligned_cols=211 Identities=8% Similarity=0.038 Sum_probs=134.6
Q ss_pred eeeeeeecCCCCeEEEEecCCCcEEEE-EcCC--ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE
Q 003467 482 LLVQVKSKASRKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA 558 (817)
Q Consensus 482 ~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~--~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~ 558 (817)
.+.++..........+.|+ ++.++.+ +.++ .|+.+++.+ +.. +....++. ........++++.|...
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T---gkv---~~~~~l~~---~~FgeGit~~g~~ly~l 102 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES---GKT---LQQIELGK---RYFGEGISDWKDKIVGL 102 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT---CCE---EEEEECCT---TCCEEEEEEETTEEEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC---CcE---EEEEecCC---ccceeEEEEeCCEEEEE
Confidence 3444433333446788888 6655444 4444 778887765 333 22233332 23333334456677666
Q ss_pred e-cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCC-C
Q 003467 559 G-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE-G 636 (817)
Q Consensus 559 ~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 636 (817)
. .++.+.+||.++.+.+.++.. ...-. .+++|++.|+.++.++.|.++|.++.+....++... +
T Consensus 103 tw~~~~v~v~D~~t~~~~~ti~~------------~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 103 TWKNGLGFVWNIRNLRQVRSFNY------------DGEGW--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp ESSSSEEEEEETTTCCEEEEEEC------------SSCCC--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred EeeCCEEEEEECccCcEEEEEEC------------CCCce--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 5 488999999999999999985 22112 344689999888888889999999998877765532 2
Q ss_pred ---CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcc-hhcCCCceeEEEECCCCCCCEEEEEcC
Q 003467 637 ---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRR-YQEFPGEVIGLSFSPSPSSSSVIIYSA 712 (817)
Q Consensus 637 ---~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~-~~~~~~~v~~l~f~p~~~~~~~~~~~~ 712 (817)
..++.+.|. ++.+.+..-.++.|.+.|.++++...|-.-....-... ...-.+-..+|+|+|+ ..++++.+.
T Consensus 169 ~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~--~~~lfVTGK 244 (262)
T 3nol_A 169 EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE--HHRLFVTGK 244 (262)
T ss_dssp EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT--TTEEEEEET
T ss_pred ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC--CCEEEEECC
Confidence 345568887 56555555568899999999998765433211100000 0111245699999996 578999999
Q ss_pred ceEEEEEc
Q 003467 713 RAMCVIDF 720 (817)
Q Consensus 713 ~~~~~~d~ 720 (817)
.|-.++.+
T Consensus 245 ~Wp~~~ev 252 (262)
T 3nol_A 245 LWPKVFEI 252 (262)
T ss_dssp TCSEEEEE
T ss_pred CCCceEEE
Confidence 99555544
No 265
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.70 E-value=3.5e-06 Score=85.45 Aligned_cols=256 Identities=8% Similarity=-0.038 Sum_probs=142.1
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCC-----------------CCCcEEEEEEee-cCCCC
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGD-----------------PKSRISSLVWCH-AGKMG 75 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~-----------------~~~~V~~l~~s~-~~~~~ 75 (817)
..-.++++.++|++|.++..++.|..||..++.. ........ ....+.++++.+ ++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-- 93 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-- 93 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---EEEecccccccccccccccchhccccCCCCceEEEcCCCCc--
Confidence 3456788999999888888889999999877651 11111110 013578999997 554
Q ss_pred CCCceEEEeeCCCeEEEEECCCCeEEEEEee-c---CceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccc
Q 003467 76 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-I---DFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET 150 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~---~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (817)
|+.+...+.|..+|..+++....... . ......+++.+ +|... +........
T Consensus 94 -----l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~-v~d~~~~~~----------------- 150 (322)
T 2fp8_A 94 -----LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVY-FTDVSTLYD----------------- 150 (322)
T ss_dssp -----EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEE-EEESCSSCC-----------------
T ss_pred -----EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEE-EECCccccc-----------------
Confidence 56665555588999876643221111 1 12356788888 77211 100000000
Q ss_pred cccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCcEEE
Q 003467 151 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRS 229 (817)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~v 229 (817)
.. . .. ..++.+..++.|..||..++........ ......++|+|+|++|+.+ ..++.|.+
T Consensus 151 ---~~--~-~~---------~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~ 211 (322)
T 2fp8_A 151 ---DR--G-VQ---------QIMDTSDKTGRLIKYDPSTKETTLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVK 211 (322)
T ss_dssp ---TT--C-HH---------HHHHHTCCCEEEEEEETTTTEEEEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ---cc--c-cc---------eehcccCCCceEEEEeCCCCEEEEeccC----CccCcceEECCCCCEEEEEeCCCCeEEE
Confidence 00 0 00 0000011235677777653332111111 1234568999999976665 45689999
Q ss_pred EECCCCc--eEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC-----------CCcEEEEeCCCCeEEEEeecCc--
Q 003467 230 WDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS-----------TGSVQFWDSRHGTLLQAHSFHK-- 294 (817)
Q Consensus 230 wd~~~g~--~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~h~-- 294 (817)
|++.... ....+.. ... ...+++.++|.|..+.. .+.|..+|.. ++.+..+....
T Consensus 212 ~~~~~~~~~~~~~~~~--------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~ 281 (322)
T 2fp8_A 212 YWLEGPKKGTAEVLVK--------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF 281 (322)
T ss_dssp EESSSTTTTCEEEEEE--------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT
T ss_pred EECCCCcCCccceEEe--------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC
Confidence 9987532 1222221 112 56789999995544433 3668888875 77777776442
Q ss_pred --cCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 295 --GDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 295 --~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
..+.++++ .+++.+++....+.|..+++....
T Consensus 282 ~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 282 AGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred ccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 34667776 355544444467889999876543
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.69 E-value=8.3e-07 Score=83.47 Aligned_cols=209 Identities=8% Similarity=-0.024 Sum_probs=132.4
Q ss_pred eeeeeecCCCCeEEEEecCCCcEEEE-EcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe-c
Q 003467 483 LVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-H 560 (817)
Q Consensus 483 ~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~-~ 560 (817)
+.++..........+.++. +.++.+ +.++.|+.+++.+ +..+- .. ++. .....-..++++.|.... .
T Consensus 46 v~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T---gkv~~---~~-l~~---~~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLES---AQPVW---ME-RLG---NIFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSC---SSCSE---EE-ECT---TCCEEEEEECSSCEEEEESS
T ss_pred EEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCC---CcEEe---EE-CCC---CcceeEEEEeCCEEEEEEcc
Confidence 3444444444467788874 443333 5667888888875 32221 12 332 222222334555665554 5
Q ss_pred CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCC-C---
Q 003467 561 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE-G--- 636 (817)
Q Consensus 561 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~-~--- 636 (817)
++.+.+||.++.+.+.++.. ...-..++ +|++.|+.++.++.|.++|.++.+....++... +
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRY------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp SCEEEEEETTTTEEEEEEEC------------SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred CCEEEEEECCcCcEEEEEeC------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 88999999999999999985 22223344 689999999889999999999998877765432 2
Q ss_pred CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccC--ccCcchhcCCCceeEEEECCCCCCCEEEEEcCce
Q 003467 637 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTF--VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 714 (817)
Q Consensus 637 ~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~--~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~ 714 (817)
..++.+.|. ++.+.+..-.++.|.+.|.++++...|-.-... ........-.+-..+|+|+|+ ..++++.|..|
T Consensus 181 ~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~--~~rlfVTGK~W 256 (268)
T 3nok_A 181 ELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG--SGRIFMTGKLW 256 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT--TCCEEEEETTC
T ss_pred ccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC--CCEEEEeCCCC
Confidence 245778887 565554444678999999999987654332110 000000112245699999996 57899999999
Q ss_pred EEEEEc
Q 003467 715 MCVIDF 720 (817)
Q Consensus 715 ~~~~d~ 720 (817)
-.++.+
T Consensus 257 p~~~ev 262 (268)
T 3nok_A 257 PRLFEV 262 (268)
T ss_dssp SEEEEE
T ss_pred CceEEE
Confidence 555543
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.69 E-value=6.7e-05 Score=75.79 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=157.5
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
...+.+++|.+++..+|+| .+|.| +.....++ .|.....-.......+.+|+|.+ +. ++.++.++.|..
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~-~~-------~~~~g~~g~i~~ 103 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQG-NE-------GWIVGEPPIMLH 103 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEET-TE-------EEEEEETTEEEE
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEecC-Ce-------EEEEECCCeEEE
Confidence 4579999999888888855 56754 33444443 56543221112245789999975 32 444566664443
Q ss_pred EECCCCeEEEEEe---ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccccccc
Q 003467 93 WDLYDLKQKIVLQ---SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 169 (817)
Q Consensus 93 wd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (817)
..+.|+.=.... .+.+.+..+.+.+++
T Consensus 104 -S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~------------------------------------------------- 133 (327)
T 2xbg_A 104 -TTDGGQSWSQIPLDPKLPGSPRLIKALGNG------------------------------------------------- 133 (327)
T ss_dssp -ESSTTSSCEECCCCTTCSSCEEEEEEEETT-------------------------------------------------
T ss_pred -ECCCCCCceECccccCCCCCeEEEEEECCC-------------------------------------------------
Confidence 223333222221 122345666666554
Q ss_pred CCEEEEEeCCCcEEEEEec-CCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCC
Q 003467 170 DRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 170 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+.+++.+|.| |... .+..... ....+...+..+++.+++.+++.+...+..+-+|- .|..-..+..
T Consensus 134 --~~~~~~~~g~v--~~S~DgG~tW~~--~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~----- 201 (327)
T 2xbg_A 134 --SAEMITNVGAI--YRTKDSGKNWQA--LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR----- 201 (327)
T ss_dssp --EEEEEETTCCE--EEESSTTSSEEE--EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC-----
T ss_pred --CEEEEeCCccE--EEEcCCCCCCEE--eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC-----
Confidence 34444456654 3332 2444432 22345567899999999888877654433333442 1333333332
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec----CccCeeEEEEecCCCEEEEEccCCcEEEEEee
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF----HKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~ 324 (817)
.....+..+.+.+++.++.++.+|.+.+.+...|+.-..+.. +...+.++++.+++..++++ .+|.| .+..+
T Consensus 202 --~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~D 277 (327)
T 2xbg_A 202 --TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQD 277 (327)
T ss_dssp --CSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESS
T ss_pred --CCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCC
Confidence 345678888999999777777788888775332433222221 22358889999887755554 56766 34444
Q ss_pred cccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCccccccccccCCCcEEEEe
Q 003467 325 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 404 (817)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 404 (817)
.+ ..|..+.........+.++.+. +++ .++.+
T Consensus 278 gG--------------~tW~~~~~~~~~~~~~~~v~~~---------~~~-------------------------~~~~~ 309 (327)
T 2xbg_A 278 GG--------------QTWQQDVDVKKVPSNFYKILFF---------SPD-------------------------QGFIL 309 (327)
T ss_dssp TT--------------SSCEECGGGTTSSSCCCEEEEE---------ETT-------------------------EEEEE
T ss_pred CC--------------cccEEcCccCCCCCCeEEEEEE---------CCC-------------------------ceEEE
Confidence 33 3465544333334567777774 222 67778
Q ss_pred cCCCeEEEEeC
Q 003467 405 GDDTKLFAYCA 415 (817)
Q Consensus 405 ~~dg~i~~~~~ 415 (817)
+.+|.|..++-
T Consensus 310 G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 GQKGILLRYVT 320 (327)
T ss_dssp CSTTEEEEECC
T ss_pred cCCceEEEEcC
Confidence 88998877664
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=7.6e-06 Score=76.43 Aligned_cols=210 Identities=11% Similarity=0.101 Sum_probs=136.5
Q ss_pred ceeeeeeecCCCCeEEEEecCCCcEEEE-EcC--CceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEE
Q 003467 481 SLLVQVKSKASRKIICSTISNSGMLFAY-SDH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 557 (817)
Q Consensus 481 ~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~--~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~ 557 (817)
+.+.+...........+.|++ +.++.+ +.. +.++.+++.+ +.. +....++.. .......++++.|..
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t---gkv---~~~~~l~~~---~fgeGi~~~~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET---GRI---LQRAEVPPP---YFGAGIVAWRDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT---CCE---EEEEECCTT---CCEEEEEEETTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC---CCE---EEEEeCCCC---cceeEEEEeCCEEEE
Confidence 445555555455577888987 454444 333 4788888765 333 222334432 222223334566655
Q ss_pred Ee-cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecCC-
Q 003467 558 AG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE- 635 (817)
Q Consensus 558 ~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~- 635 (817)
.. .++.+.+||.++.+.+.++.. ...-..++ +|++.|.+++.++.|.++|.++.+....+....
T Consensus 80 ltw~~~~v~v~D~~tl~~~~ti~~------------~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~ 145 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPRARFRY------------PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG 145 (243)
T ss_dssp EESSSSEEEEEETTTTEEEEEEEC------------SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEeeCCEEEEEECCcCcEEEEEeC------------CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC
Confidence 54 588999999999999999985 22223444 688888888889999999999998877765432
Q ss_pred C---CCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcch----hcCCCceeEEEECCCCCCCEEE
Q 003467 636 G---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRY----QEFPGEVIGLSFSPSPSSSSVI 708 (817)
Q Consensus 636 ~---~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~----~~~~~~v~~l~f~p~~~~~~~~ 708 (817)
+ ..++.+.|. ++...+..-.++.|.+.|..+++...|-.-... .... ..-.+-..+|+++|+ ..+++
T Consensus 146 g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l--~~~~~~~~~~~~~vlNGIA~d~~--~~~lf 219 (243)
T 3mbr_X 146 GRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQAL--VPDADALTDSTNDVLNGIAFDAE--HDRLF 219 (243)
T ss_dssp TEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG--STTTTSCCCTTSSCEEEEEEETT--TTEEE
T ss_pred CcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC--ccccccccCCcCCceEEEEEcCC--CCEEE
Confidence 1 356677876 566555554678999999999987655332211 1111 112245799999996 57999
Q ss_pred EEcCceEEEEEc
Q 003467 709 IYSARAMCVIDF 720 (817)
Q Consensus 709 ~~~~~~~~~~d~ 720 (817)
+.+..|-.++.+
T Consensus 220 VTGK~wp~~~~v 231 (243)
T 3mbr_X 220 VTGKRWPMLYEI 231 (243)
T ss_dssp EEETTCSEEEEE
T ss_pred EECCCCCcEEEE
Confidence 999999555544
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1e-05 Score=88.41 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=78.3
Q ss_pred cCCC---EEEEEecCCcEEEEEccCCceeeeeccCccc------c---c-----ccCCC---------CCCc--------
Q 003467 550 YDSS---QLIIAGHDRRIYVVDVSSSELLHTFTPCREE------H---D-----REIQP---------SEPP-------- 595 (817)
Q Consensus 550 pd~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------~---~-----~~~~~---------~~~~-------- 595 (817)
.+|+ .++.++.+|.++++|..+|+++..+...... + . ....+ ....
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4774 7788899999999999999988766542100 0 0 00000 0000
Q ss_pred ---eeEEEEccCCCEEEEEe---------------------------------CCCcEEEEECCCcceEEEEecCCCCCe
Q 003467 596 ---ITKMFTSSDGQWLAAVN---------------------------------CFGDVYIFNLEIQRQHWFISRLEGASV 639 (817)
Q Consensus 596 ---i~~l~~s~dg~~la~~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~i 639 (817)
-..++++|+...+.+.. .+|.|..||+.+++..|..+... ++
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~ 488 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PL 488 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CC
Confidence 12457777766555432 36889999999999999886532 22
Q ss_pred EEEEecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 003467 640 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 671 (817)
Q Consensus 640 ~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~ 671 (817)
..-.... .+.++++++.|+.++.||.++++.
T Consensus 489 ~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 489 WAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CSCCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccceEe-CCCEEEEECCCCcEEEEECCCCCE
Confidence 2222222 456888899999999999999985
No 270
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.60 E-value=0.003 Score=74.47 Aligned_cols=412 Identities=11% Similarity=0.126 Sum_probs=210.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC------CCEEEEeeC-CCcEEEEECCCCceEEEEEe
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD------GNMLYSGSS-DGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d------g~~l~s~~~-dg~i~vwd~~~g~~~~~~~~ 243 (817)
..++.+. .+.+.++++..+ .+...... .-...|.|+++.|. +++++.|+. |++|+|+++.+.+.+.....
T Consensus 524 ~~vvva~-g~~l~~fel~~~-~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQ-ELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETT-EEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEE-CCEEEEEEeeCC-ceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 3566664 678888888753 33222211 22457999999864 369999996 99999999987776655443
Q ss_pred ecCCCCCCCceeEEEeEEec-CC--eEEEEcCCCcEEEE--eCCCCeEEEE--eecCccCeeEEEEecCCC-EEEEEccC
Q 003467 244 GLGGLGSGPELCIWSLLSLR-CG--TLVSADSTGSVQFW--DSRHGTLLQA--HSFHKGDVNALAAAPSHN-RVFSTGSD 315 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~-~~--~l~s~~~dg~i~iw--d~~~~~~~~~--~~~h~~~v~~l~~s~~~~-~l~~~~~d 315 (817)
. .+....++.+.. ++ +|..|-.||.+.-+ |..+|++... ..-...++.-..+...+. .+++.| +
T Consensus 601 ~-------~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~ 672 (1158)
T 3ei3_A 601 G-------GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-D 672 (1158)
T ss_dssp C-------SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-S
T ss_pred C-------CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-C
Confidence 1 112233333321 23 68888899987554 4445655432 122234554444544443 344443 4
Q ss_pred CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCCCccceeEeecccCCCCCCCccccccccCCCCCcccccccccc
Q 003467 316 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH 395 (817)
Q Consensus 316 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
....+|.... .. ....+ ....+..++- ++.. ..|+
T Consensus 673 rp~liy~~~~-~l----------------~~s~l--~~~~v~~~~~---F~se-~~~~---------------------- 707 (1158)
T 3ei3_A 673 RPTVIYSSNH-KL----------------VFSNV--NLKEVNYMCP---LNSD-GYPD---------------------- 707 (1158)
T ss_dssp SCEEEEESSS-SE----------------EEEEB--SSSCCCEEEE---ECCS-SSTT----------------------
T ss_pred CCEEEEEcCC-ce----------------EEecc--ChHHhceEec---cCcc-cCCC----------------------
Confidence 4444444321 10 11111 1112333321 1100 0122
Q ss_pred CCCcEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceeecCCeEEEEEeCCeEEEEEeccc-CC-------
Q 003467 396 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE-NN------- 467 (817)
Q Consensus 396 ~~~~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~i~i~~~~~~-~~------- 467 (817)
-++... ++.+++..+.....+....+. ....+..++++|+...++.....-..+..... ..
T Consensus 708 ----g~v~~~-~~~LrI~~i~~~~~~~~~~ip------L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 776 (1158)
T 3ei3_A 708 ----SLALAN-NSTLTIGTIDEIQKLHIRTVP------LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAST 776 (1158)
T ss_dssp ----EEEEEC-SSCEEEEEECCSSSEEEEEEE------CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHH
T ss_pred ----cEEEEc-CCceEEEEecccCCeeEEEEe------CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhh
Confidence 233222 345888777654332222111 11233455556554433221111111111000 00
Q ss_pred ----------------cccCCCCCCC------------CccceeeeeeecCCCCeEEEE---ecCC-CcEEEEEc-----
Q 003467 468 ----------------VESRSSSGGH------------ASTSLLVQVKSKASRKIICST---ISNS-GMLFAYSD----- 510 (817)
Q Consensus 468 ----------------~~~~~~~~g~------------~~~~~~~~~~~~~~~~i~~~~---~s~~-g~~la~~~----- 510 (817)
.......-|. .+.+.+..+.....+.+.|++ |..+ ..++++|+
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~ 856 (1158)
T 3ei3_A 777 QALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYP 856 (1158)
T ss_dssp HCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCT
T ss_pred hhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCC
Confidence 0000000000 112234445555555566554 3332 46787764
Q ss_pred ------CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCccc
Q 003467 511 ------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE 584 (817)
Q Consensus 511 ------~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 584 (817)
.|.+.+|++.. .++-.+.+.+.. +.+++++-- +| +|++| ....|++|++...+.++ ....
T Consensus 857 ~e~~~~~Gri~vf~v~~----~kL~lv~~~~v~---g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~~--- 922 (1158)
T 3ei3_A 857 EEAEPKQGRIVVFQYSD----GKLQTVAEKEVK---GAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TECN--- 922 (1158)
T ss_dssp TCSSCCCEEEEEEEEET----TEEEEEEEEEES---SCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEEE---
T ss_pred CCCCCCceEEEEEEEEC----CEEEEEEEEEcC---CcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEee---
Confidence 26788998872 132223333333 367777632 45 44444 35789999997655444 2110
Q ss_pred ccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEE--ECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEE
Q 003467 585 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF--NLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVY 662 (817)
Q Consensus 585 ~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~ 662 (817)
+-..|..+.....|+++++|+.-..|.++ +....+....-.......++++.|-. + ..++.+..+|.|.
T Consensus 923 -------~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld-~-~t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 923 -------HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD-D-DNFLGAENAFNLF 993 (1158)
T ss_dssp -------ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE-T-TEEEEEETTSEEE
T ss_pred -------ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc-c-CcEEEEcCCCcEE
Confidence 12224433343467899999988877765 44555554444444557899999985 4 5788899999999
Q ss_pred EEEcCCCccc
Q 003467 663 VFDVEAKQLG 672 (817)
Q Consensus 663 vwd~~~~~~~ 672 (817)
++.......+
T Consensus 994 vl~~~~~~~~ 1003 (1158)
T 3ei3_A 994 VCQKDSAATT 1003 (1158)
T ss_dssp EEEECTTCCS
T ss_pred EEecCCCCCC
Confidence 9988765443
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.59 E-value=5.4e-06 Score=93.01 Aligned_cols=247 Identities=8% Similarity=-0.029 Sum_probs=135.0
Q ss_pred EEEECC-CCCeEEEEecCC-----------cEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee
Q 003467 18 ALATSA-DDSQVAAAREDG-----------SLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS 85 (817)
Q Consensus 18 ~la~sp-dg~~la~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~ 85 (817)
+.++.| +++.++.|+.+. .+.+||+.+++ |.....+...+.....++++.++++. ++.||
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~l------yv~GG 261 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQI------VVTGG 261 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCE------EEECS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCE------EEeCC
Confidence 567777 899999987543 58899998875 44444554433334446788888886 77777
Q ss_pred C-CCeEEEEECCCCeEEEEEeecCceE-EEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccc
Q 003467 86 I-DGSVSEWDLYDLKQKIVLQSIDFSI-WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH 163 (817)
Q Consensus 86 ~-d~~i~vwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (817)
. +..+.+||..+.+-...-.-+..+- .++++.+++
T Consensus 262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg------------------------------------------- 298 (656)
T 1k3i_A 262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG------------------------------------------- 298 (656)
T ss_dssp SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-------------------------------------------
T ss_pred CCCCceEEecCcCCceeECCCCCccccccceEEecCC-------------------------------------------
Confidence 4 4689999988765332211111111 112222333
Q ss_pred ccccccCCEEEEEe-CC-----CcEEEEEecCCCceeEee-----ccCCccceEEEEEEccCCCEEEEeeCC--------
Q 003467 164 EQSVVEDRRVALAC-DD-----GCVRIYRITDSDELIYHR-----SLPRVSGRVLSVTWSADGNMLYSGSSD-------- 224 (817)
Q Consensus 164 ~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~v~~s~dg~~l~s~~~d-------- 224 (817)
+.++.|+ .+ ..+.+||..++.-. ... .+..... ...+..++...+.|+.+
T Consensus 299 -------~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~ 367 (656)
T 1k3i_A 299 -------RVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGP 367 (656)
T ss_dssp -------CEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCS
T ss_pred -------eEEEEeCcccCCcccccceEeCCCCCcce-eCCCccccccccccc---cceeecCCceEEEECCCCcEEEecC
Confidence 5777777 34 56899998754322 110 1110000 01223344444555444
Q ss_pred -CcEEEEECCCCceEEEEEeecCCC-CCCCceeEEEeEEec-CC-eEEEEcCCC-----------cEEEEeCCCCeEEEE
Q 003467 225 -GYIRSWDAKLGYEIYRITVGLGGL-GSGPELCIWSLLSLR-CG-TLVSADSTG-----------SVQFWDSRHGTLLQA 289 (817)
Q Consensus 225 -g~i~vwd~~~g~~~~~~~~~~~~~-~~~~~~~v~~v~~~~-~~-~l~s~~~dg-----------~i~iwd~~~~~~~~~ 289 (817)
..+..||..+.............. .......-.++.+.. ++ .++.|+.++ .|.+||..+.+....
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 357788888776544333110000 000011223444433 55 566666432 578888887665443
Q ss_pred e--ecCccCe-eEEEEecCCCEEEEEccC-----------CcEEEEEeecc
Q 003467 290 H--SFHKGDV-NALAAAPSHNRVFSTGSD-----------GQVILYKASCE 326 (817)
Q Consensus 290 ~--~~h~~~v-~~l~~s~~~~~l~~~~~d-----------g~i~iw~~~~~ 326 (817)
. ..+.... .+++..|+++.++.||.+ ..+.+||..+.
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 3 2223332 345667899999998864 45778887653
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.55 E-value=3.7e-05 Score=77.02 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=134.3
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeC-CC-eEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSI-DG-SVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~-d~-~i~ 91 (817)
.....++++|+|+++++-..++.|..||..+.. ...+.. .....+++++++|++ +++... ++ .|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-----~~~~~~--~~~p~gia~~~dG~l------~vad~~~~~~~v~ 98 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----QIHATV--EGKVSGLAFTSNGDL------VATGWNADSIPVV 98 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----EEEEEC--SSEEEEEEECTTSCE------EEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-----EEEEeC--CCCceeEEEcCCCcE------EEEeccCCcceEE
Confidence 567899999999977776678999999987532 222322 357899999999875 554433 22 477
Q ss_pred EEECCCCeEEEEEeec-CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 92 EWDLYDLKQKIVLQSI-DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
.+|..+++........ ......++..+++
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------------------- 128 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDT-------------------------------------------------- 128 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSS--------------------------------------------------
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCC--------------------------------------------------
Confidence 7787787754332211 1111222222222
Q ss_pred CEEEEEeCCCcEEEEEecCCC-ceeEe-e-----ccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECCC-Cce--EE
Q 003467 171 RRVALACDDGCVRIYRITDSD-ELIYH-R-----SLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKL-GYE--IY 239 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~-~~~~~-~-----~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~-g~~--~~ 239 (817)
..+++-..++.|+.+|..++. .+... . .....-.....+ ++|+++|+.+. ..+.|.++++.. ++. ..
T Consensus 129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~ 206 (306)
T 2p4o_A 129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE 206 (306)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccE
Confidence 134444457888888865321 11100 0 111111234455 78888776654 467899999864 332 11
Q ss_pred EEEeecCCCCCCCceeEEEeEEecCCeEEEEc-CCCcEEEEeCCCCeEEE--EeecCccCeeEEEEe---cCCCEEEEEc
Q 003467 240 RITVGLGGLGSGPELCIWSLLSLRCGTLVSAD-STGSVQFWDSRHGTLLQ--AHSFHKGDVNALAAA---PSHNRVFSTG 313 (817)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~s---~~~~~l~~~~ 313 (817)
.+.. ......+++.++|.+..+. ..+.|.++|.. |+... .+........+++|. |+++.|+++.
T Consensus 207 ~~~~---------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 207 IFVE---------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEE---------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEec---------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 1210 1234557888999655444 46789999976 66532 343333568999998 8888888775
Q ss_pred cC
Q 003467 314 SD 315 (817)
Q Consensus 314 ~d 315 (817)
..
T Consensus 277 ~~ 278 (306)
T 2p4o_A 277 NG 278 (306)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 273
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.53 E-value=3.4e-05 Score=78.07 Aligned_cols=195 Identities=9% Similarity=-0.009 Sum_probs=119.7
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee--------------------cCceEEEEeeec-C
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS--------------------IDFSIWQMAVAP-S 119 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------------------~~~~i~~~~~s~-~ 119 (817)
....+++|.+++.+ |+++..++.|..||..+++.. .+.. .......+++.+ +
T Consensus 19 ~~p~~i~~d~~g~~------l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNKG------FYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCSS------EEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCCE------EEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 34568899999887 888888999999998876533 2221 012467788886 5
Q ss_pred CCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeecc
Q 003467 120 NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL 199 (817)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 199 (817)
+ .|.++...+.|..+|..++....+....
T Consensus 92 g---------------------------------------------------~l~v~d~~~~i~~~d~~~g~~~~~~~~~ 120 (322)
T 2fp8_A 92 N---------------------------------------------------QLYIVDCYYHLSVVGSEGGHATQLATSV 120 (322)
T ss_dssp T---------------------------------------------------EEEEEETTTEEEEECTTCEECEEEESEE
T ss_pred C---------------------------------------------------cEEEEECCCCEEEEeCCCCEEEEecccC
Confidence 5 5666655555777876533211111111
Q ss_pred CC-ccceEEEEEEcc-CCCEEEEeeC-----------------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeE
Q 003467 200 PR-VSGRVLSVTWSA-DGNMLYSGSS-----------------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL 260 (817)
Q Consensus 200 ~~-h~~~v~~v~~s~-dg~~l~s~~~-----------------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~ 260 (817)
.+ .......+++.+ +|+..++-.. ++.|..||..+++...... .......++
T Consensus 121 ~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~---------~~~~p~gia 191 (322)
T 2fp8_A 121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK---------ELHVPGGAE 191 (322)
T ss_dssp TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE---------EESCCCEEE
T ss_pred CCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc---------CCccCcceE
Confidence 11 123578899999 9987666432 3678899987675433222 112345689
Q ss_pred EecCC-eEE-EEcCCCcEEEEeCCCCe--EEEEeecCccCeeEEEEecCCCEEEEEcc----------CCcEEEEEe
Q 003467 261 SLRCG-TLV-SADSTGSVQFWDSRHGT--LLQAHSFHKGDVNALAAAPSHNRVFSTGS----------DGQVILYKA 323 (817)
Q Consensus 261 ~~~~~-~l~-s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~~~~~----------dg~i~iw~~ 323 (817)
+++++ .|. +-...+.|.++++.... ....+....+ ...++++++|+..++... .+.|..++.
T Consensus 192 ~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 99998 354 44566889999987421 1111211223 778999999986555433 355666664
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.00026 Score=67.28 Aligned_cols=209 Identities=13% Similarity=0.068 Sum_probs=133.6
Q ss_pred EEEcCCCCCcEEEEEEeecCCCCCCCceEEE-eeCCCeEEEEECCCCeEEEEEeec-CceEEEEeeecCCCccceeeccC
Q 003467 53 LTVHGDPKSRISSLVWCHAGKMGLPGGRLFS-SSIDGSVSEWDLYDLKQKIVLQSI-DFSIWQMAVAPSNSSLMHAVTNS 130 (817)
Q Consensus 53 ~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~~~~~~~ 130 (817)
+.++|- ...+.+|+|.|++.. |++ ...++.|...|+. |+.++.+.-. ......+++.+++
T Consensus 20 ~~l~g~-~~~lSGla~~~~~~~------L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g---------- 81 (255)
T 3qqz_A 20 KEIAGI-TNNISSLTWSAQSNT------LFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN---------- 81 (255)
T ss_dssp EECTTC-CSCEEEEEEETTTTE------EEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT----------
T ss_pred eECCCc-ccCcceeEEeCCCCE------EEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC----------
Confidence 456666 467999999998754 555 6668899999998 8888877532 2456777887776
Q ss_pred ccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeE--eecc----CCccc
Q 003467 131 DHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY--HRSL----PRVSG 204 (817)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~----~~h~~ 204 (817)
.++++.-.++.+.++++.....+.. ...+ .....
T Consensus 82 ----------------------------------------~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~ 121 (255)
T 3qqz_A 82 ----------------------------------------QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNC 121 (255)
T ss_dssp ----------------------------------------EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSS
T ss_pred ----------------------------------------EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccC
Confidence 2333433567788888764443211 1111 12344
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECC---CCceEEEEEeecCCCCCCCceeEEEeEEecCC--eEEEEcCCCcEEEE
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAK---LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFW 279 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~---~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~s~~~dg~i~iw 279 (817)
....++|+|+++.|.++.......+|.+. .+..+..+....- ........+.++++.|.. .++..+....|.++
T Consensus 122 g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~-~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~ 200 (255)
T 3qqz_A 122 GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL-QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEV 200 (255)
T ss_dssp CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH-HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh-ccccccCCceeEEEcCCCCeEEEEECCCCeEEEE
Confidence 57899999999888888776666666654 1222222221000 000123456889999876 57778888889999
Q ss_pred eCCCCeEEEEeecCc---------cCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 280 DSRHGTLLQAHSFHK---------GDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 280 d~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
|.+ |+.+..+.-.. ..--.++|.++|+ |+..+..+.++.|.
T Consensus 201 d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 201 TLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred cCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 987 66666554332 2567899999997 55556766555554
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00061 Score=69.31 Aligned_cols=241 Identities=10% Similarity=-0.039 Sum_probs=145.6
Q ss_pred CCCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeE
Q 003467 12 KPSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSV 90 (817)
Q Consensus 12 h~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i 90 (817)
++...+|.+..+++ +|..+.. ..|+..++.... ....+.+. ..+.+++|.+.+.. |+.+. ..+.|
T Consensus 32 ~~d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~----~~~~~~~~--~~~~~l~~d~~~~~------ly~~D~~~~~I 97 (349)
T 3v64_C 32 RPDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSE----YTLLLNNL--ENAIALDFHHRREL------VFWSDVTLDRI 97 (349)
T ss_dssp CTTSSCEEESSSCC-EEEEECB-SCEEEECTTSCC----EEEEECSC--SCEEEEEEETTTTE------EEEEETTTTEE
T ss_pred CCCCCcccccccCc-eeEeecc-cceEEEeCCCCe----eEEeecCC--CceEEEEEeccccE------EEEEeccCCce
Confidence 35667888887744 5555544 458888887654 34444443 46889999987654 55544 56889
Q ss_pred EEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 91 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
..+++..+.....+.........+++.+.+.
T Consensus 98 ~r~~~~g~~~~~~~~~~~~~p~glavd~~~g------------------------------------------------- 128 (349)
T 3v64_C 98 LRANLNGSNVEEVVSTGLESPGGLAVDWVHD------------------------------------------------- 128 (349)
T ss_dssp EEEETTSCSCEEEECSSCSCCCEEEEETTTT-------------------------------------------------
T ss_pred EEEecCCCCceEEEeCCCCCccEEEEecCCC-------------------------------------------------
Confidence 9999887654443332223446777876542
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-C-CcEEEEECCCCceEEEEEeecCCC
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-D-GYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-d-g~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.+.++-...+.|.+.++...... ..+...-.....++++|.+..|+.... . +.|...++. |.....+..
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~---~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~----- 199 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRK---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIAD----- 199 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE---EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESCC-----
T ss_pred eEEEEcCCCCeEEEEcCCCCceE---EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEEE-----
Confidence 24455556678888888633222 112223345789999997666665543 3 678888875 433333221
Q ss_pred CCCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 249 GSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
..-.....+++++++ .| ++-...+.|..+|+........+.........+++. ++...++-...+.|..++..++
T Consensus 200 --~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 200 --THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp --SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred --CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCC
Confidence 233456889999755 54 444556789999987433233333334556778883 4444444455777877774444
Q ss_pred c
Q 003467 327 S 327 (817)
Q Consensus 327 ~ 327 (817)
.
T Consensus 277 ~ 277 (349)
T 3v64_C 277 K 277 (349)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.39 E-value=6.5e-05 Score=84.22 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=63.0
Q ss_pred eeEEEEec-CCCEEEEEecCC-----------cEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEE
Q 003467 543 AHSMIFSY-DSSQLIIAGHDR-----------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 610 (817)
Q Consensus 543 i~~~~fsp-d~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 610 (817)
..++.|.. +++.+++|+.++ .|.+||..+.+........ ++ ....-.++++.|||++++.
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-------mp-~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-------LY-FARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-------CS-SCCBSCEEEECTTSCEEEE
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC-------CC-CCcccCCeEECCCCCEEEE
Confidence 34555544 788888887542 5778887765543322010 00 1222345567789999999
Q ss_pred EeCC-----------CcEEEEECCCcceEEEEecCC--CCCeEEEEecCCCCCeEEEEec
Q 003467 611 VNCF-----------GDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTS 657 (817)
Q Consensus 611 ~~~d-----------g~i~vwd~~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~l~~~~~ 657 (817)
|+.+ ..+.+||.++.+... +.... .....+..+.| ++++++.|+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceee-cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 9854 468999998876432 22111 12233455678 8999998885
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.34 E-value=1.9e-05 Score=89.91 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=113.8
Q ss_pred ceEEEEEC-CCCCeEEEEec-CC----cEEEEecCCC-CCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 15 PVVALATS-ADDSQVAAARE-DG----SLEIWLVSPG-TSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 15 ~I~~la~s-pdg~~la~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
.+...+|| |||++||.+.. +| +|.++|+.++ +... ..+. ....+++|+|||+. |+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~~----~~~~~~~WspDg~~------l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKVS----GTNGEIVWGPDHTS------LFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCEE----EECSCCEECSSTTE------EEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---cccc----CceeeEEEecCCCE------EEEEEEC
Confidence 68889999 99999997643 22 4999999988 5211 1111 12346889999986 7766654
Q ss_pred -----CeEEEEECCCCeE--EEEEe-ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCC
Q 003467 88 -----GSVSEWDLYDLKQ--KIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS 159 (817)
Q Consensus 88 -----~~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (817)
..|..+++.++.. ...+. ........+.|+||+..
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~------------------------------------- 284 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT------------------------------------- 284 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE-------------------------------------
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE-------------------------------------
Confidence 3688899887642 22332 22334567899999954
Q ss_pred ccccccccccCCEEEEEe---CCCcEEEEEecCCC-ceeEeeccCCccceEEEEEEccCCCEEE-EeeCC----CcEEEE
Q 003467 160 DELHEQSVVEDRRVALAC---DDGCVRIYRITDSD-ELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSD----GYIRSW 230 (817)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~-s~~~d----g~i~vw 230 (817)
|+..+ ....|+++|+.++. .........+..+...++.|+. |+.|+ ....+ ..|..+
T Consensus 285 -------------l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~ 350 (751)
T 2xe4_A 285 -------------LCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIA 350 (751)
T ss_dssp -------------EEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEE
T ss_pred -------------EEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEE
Confidence 33332 34568888887542 1200123334445556666654 55544 43333 357777
Q ss_pred ECCCCceEEE-EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCc--EEEEeC
Q 003467 231 DAKLGYEIYR-ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS--VQFWDS 281 (817)
Q Consensus 231 d~~~g~~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~--i~iwd~ 281 (817)
++.++..... +... .....+..+.+..+..+++...+|. |.++|+
T Consensus 351 d~~~~~~~~~~li~~------~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 351 PRGQPSDWSHVLVDH------SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ETTSTTCCCCEEECC------CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred cCCCcccceeeEECC------CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 7765322222 2210 2233556666654435667777775 555665
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.0006 Score=68.09 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=67.3
Q ss_pred ceeEEEEecCCCEEEEEec-CCcEEEEEccC-Cce--eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcE
Q 003467 542 FAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV 617 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~-dg~i~v~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i 617 (817)
....+ +||+++|+++.. .+.|++|++.. ++. ...+.. ......++++++|+++++....+.|
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------QTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------SCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------cCCCCCeEECCCCCEEEEeCCCCeE
Confidence 34455 899987776654 67899999874 332 111211 1345678999999887777777889
Q ss_pred EEEECCCcceEEE--EecCCCCCeEEEEec---CCCCCeEEEEecCC
Q 003467 618 YIFNLEIQRQHWF--ISRLEGASVTAAGFP---PQNNNVLIITTSSN 659 (817)
Q Consensus 618 ~vwd~~~~~~~~~--~~~~~~~~i~~l~~s---p~d~~~l~~~~~d~ 659 (817)
.+++.+ ++.... ++. ....+++++|. | +++.|++++..+
T Consensus 236 ~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 236 VRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp EEECTT-CCEEEEECGGG-TCTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred EEECCC-CCEEEEeeccc-ccCCceEEEEecccC-CCCEEEEECCCC
Confidence 999976 443221 221 22468999998 8 877888776544
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00051 Score=71.05 Aligned_cols=240 Identities=10% Similarity=-0.044 Sum_probs=144.3
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe-eCCCeEE
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-SIDGSVS 91 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-~~d~~i~ 91 (817)
+..-+|.+..+++ +|..+.. ..|+..++..... .....+ ...+.+++|.+.+.. |+.+ ...+.|.
T Consensus 76 ~d~~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~----~~~~~~--~~~~~gl~~d~~~~~------ly~~D~~~~~I~ 141 (386)
T 3v65_B 76 PDRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEY----TLLLNN--LENAIALDFHHRREL------VFWSDVTLDRIL 141 (386)
T ss_dssp TTSSCEEECSSCC-EEEEECB-SCEEEECTTSCCC----EEEECS--CSCEEEEEEETTTTE------EEEEETTTTEEE
T ss_pred CCCCeECCccccc-eeEeecC-ccceeeccCCCcE----EEEecC--CCccEEEEEecCCCe------EEEEeCCCCcEE
Confidence 3455677777644 5555544 5688899877652 334443 356889999987654 5554 4568899
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
.+++..+.....+.........+++.+.+. .
T Consensus 142 r~~~~g~~~~~~~~~~~~~p~glavd~~~g-------------------------------------------------~ 172 (386)
T 3v65_B 142 RANLNGSNVEEVVSTGLESPGGLAVDWVHD-------------------------------------------------K 172 (386)
T ss_dssp EEETTSCCEEEEECSSCSCCCCEEEETTTT-------------------------------------------------E
T ss_pred EEecCCCCcEEEEeCCCCCccEEEEEeCCC-------------------------------------------------e
Confidence 999887654443332223345677776542 2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-C-CcEEEEECCCCceEEEEEeecCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-D-GYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-d-g~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+.++-...+.|.+.++...... ..+...-.....++++|.+..|+.... . +.|...++. |.....+..
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~---~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~------ 242 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRK---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIAD------ 242 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCE---EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEEC------
T ss_pred EEEEcCCCCeEEEEeCCCCceE---EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEE------
Confidence 4445555677777777533222 112223356789999997776666543 3 678888875 444444431
Q ss_pred CCCceeEEEeEEecCC-eE-EEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 250 SGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
..-.....+++++++ +| ++-...+.|..+|+........+.........+++. .+..+++-...+.|..++..++.
T Consensus 243 -~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 243 -THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp -SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCc
Confidence 233456789999654 54 444556789999987433333333334556778883 44444555567788888754444
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0023 Score=64.38 Aligned_cols=156 Identities=13% Similarity=0.010 Sum_probs=93.5
Q ss_pred CCeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCcEEEEEccC
Q 003467 492 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS 571 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~ 571 (817)
..+..+++.+++++++++..+.+..- . +.+...|..... .....+..++++++++.++ ++.+|.+++.+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S--~--d~gG~tW~~~~~---~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYST--W--EPGQTAWEPHNR---TTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN 234 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEE--E--CTTCSSCEEEEC---CSSSCEEEEEECTTSCEEE-EETTTEEEEEETTE
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEE--e--CCCCCceeECCC---CCCCccceeEECCCCCEEE-EeCCceEEEecCCC
Confidence 45678888999999988877764332 2 122344543321 1234678899999987665 45678777764332
Q ss_pred CceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcceEEEEecC--CCCCeEEEEecCCCC
Q 003467 572 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL--EGASVTAAGFPPQNN 649 (817)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~i~~l~~sp~d~ 649 (817)
++.-..+... .+ .....+..+++.+++..++++. +|.| .+..+.++....+... ....+.++.|.+ ++
T Consensus 235 G~tW~~~~~~------~~-~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~ 304 (327)
T 2xbg_A 235 SENWGELLSP------LR-RNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PD 304 (327)
T ss_dssp EEEECCCBCT------TS-SCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-TT
T ss_pred CCeeEeccCC------cc-cCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-CC
Confidence 3332222210 00 0234588999999888777665 6666 4555666544334322 124678898975 44
Q ss_pred CeEEEEecCCeEEEEEc
Q 003467 650 NVLIITTSSNQVYVFDV 666 (817)
Q Consensus 650 ~~l~~~~~d~~i~vwd~ 666 (817)
.+++++.+|.|.-++-
T Consensus 305 -~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 305 -QGFILGQKGILLRYVT 320 (327)
T ss_dssp -EEEEECSTTEEEEECC
T ss_pred -ceEEEcCCceEEEEcC
Confidence 5777788997766653
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00087 Score=63.64 Aligned_cols=211 Identities=12% Similarity=0.105 Sum_probs=133.1
Q ss_pred eccCCCceEEEEECCCCCeEE-EEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC
Q 003467 9 IDWKPSPVVALATSADDSQVA-AAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID 87 (817)
Q Consensus 9 ~~~h~~~I~~la~spdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d 87 (817)
+.+-...+..|++.|++..|. +...++.|...|.. ++ ....++-.......+|++.+++.+ +++.-.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~----v~~~i~l~g~~D~EGIa~~~~g~~------~vs~E~~ 90 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD----LIRTIPLDFVKDLETIEYIGDNQF------VISDERD 90 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC----EEEEEECSSCSSEEEEEECSTTEE------EEEETTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC----EEEEEecCCCCChHHeEEeCCCEE------EEEECCC
Confidence 345667899999999876554 56778888888987 55 344443221367999999988865 5665567
Q ss_pred CeEEEEECCCCeE---EEEEe------ecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCC
Q 003467 88 GSVSEWDLYDLKQ---KIVLQ------SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD 158 (817)
Q Consensus 88 ~~i~vwd~~~~~~---~~~~~------~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (817)
+.+.++++..... +.... ........++|+|.+
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-------------------------------------- 132 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-------------------------------------- 132 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--------------------------------------
T ss_pred CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--------------------------------------
Confidence 8899998765432 22221 122345788888877
Q ss_pred CccccccccccCCEEEEEeCCCcEEEEEecC---CCceeEeec--c--CCccceEEEEEEccCCCEEEEee-CCCcEEEE
Q 003467 159 SDELHEQSVVEDRRVALACDDGCVRIYRITD---SDELIYHRS--L--PRVSGRVLSVTWSADGNMLYSGS-SDGYIRSW 230 (817)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~--~--~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vw 230 (817)
+.|.++.+.....||.+.. ...+..... + ..+...+.+++++|....|...+ ....|.++
T Consensus 133 ------------~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~ 200 (255)
T 3qqz_A 133 ------------HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEV 200 (255)
T ss_dssp ------------TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ------------CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEE
Confidence 3666677766667777651 111211100 0 11234578999999766555544 45788899
Q ss_pred ECCCCceEEEEEeecCCCC-CCCceeEEEeEEecCCeEEEEcCCCcEEEEeC
Q 003467 231 DAKLGYEIYRITVGLGGLG-SGPELCIWSLLSLRCGTLVSADSTGSVQFWDS 281 (817)
Q Consensus 231 d~~~g~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~ 281 (817)
|. +|+.+..+....+... ...-..-..|+|.++|.|...++...+..+.-
T Consensus 201 d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 201 TL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp CT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred cC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 96 4777777775421100 01123667899999997766677666665543
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.16 E-value=0.002 Score=65.52 Aligned_cols=208 Identities=10% Similarity=-0.062 Sum_probs=126.5
Q ss_pred CceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 14 SPVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
....+++|.+.+..|..+ ..++.|..+++.+... ...+... .....++++.+.+.. ..++-...+.|.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----~~~~~~~-~~~p~glavd~~~g~-----ly~~d~~~~~I~~ 142 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----EEVVSTG-LESPGGLAVDWVHDK-----LYWTDSGTSRIEV 142 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSS-CSCCCEEEEETTTTE-----EEEEETTTTEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCc----eEEEeCC-CCCccEEEEecCCCe-----EEEEcCCCCeEEE
Confidence 346789999876666655 4567899999887652 2233222 345678999876543 1344455678999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
.+++.......+.........+++.|.+.. +
T Consensus 143 ~~~dG~~~~~l~~~~l~~P~~iavdp~~g~-------------------------------------------------l 173 (349)
T 3v64_C 143 ANLDGAHRKVLLWQSLEKPRAIALHPMEGT-------------------------------------------------I 173 (349)
T ss_dssp EETTSCSCEEEECTTCSCEEEEEEETTTTE-------------------------------------------------E
T ss_pred EcCCCCceEEEEeCCCCCcceEEEecCcCe-------------------------------------------------E
Confidence 998765433333333355688999986532 3
Q ss_pred EEEEeCC-CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 173 VALACDD-GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 173 l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.++-... +.|..+++... ... ......-.....++|+|++..|..+.. .+.|..+|+. |.....+..
T Consensus 174 y~td~~~~~~I~r~~~dG~-~~~--~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d-G~~~~~~~~------- 242 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGS-GRR--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVIS------- 242 (349)
T ss_dssp EEEECSSSCEEEEEETTSC-SCE--ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC-------
T ss_pred EEeccCCCCEEEEEeCCCC-CcE--EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC-CCceEEEEe-------
Confidence 3333344 77887877632 221 112223346789999998877776654 5689999976 443333331
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
........+++..+..+++-...+.|..++..+|+.+..+.
T Consensus 243 ~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 12234456666433355666667778888866676665554
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.12 E-value=0.0063 Score=60.81 Aligned_cols=226 Identities=9% Similarity=-0.052 Sum_probs=135.0
Q ss_pred eEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEEEEECCC---CeEEE
Q 003467 27 QVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVSEWDLYD---LKQKI 102 (817)
Q Consensus 27 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~vwd~~~---~~~~~ 102 (817)
+|..+.. ..|+..|+.+... ...+.. .....+++|.+++.. |+.+. .++.|..+++.+ +....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~----~~~~~~--~~~p~g~~~d~~~~~------ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEY----TSLIPN--LRNVVALDTEVASNR------IYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCC----EEEECS--CSSEEEEEEETTTTE------EEEEETTTTEEEEEEC--------CE
T ss_pred EEEEECC-CeEEEEECCCcce----EehhcC--CCceEEEEEEeCCCE------EEEEECCCCcEEEEECCCCCCCcccE
Confidence 4556554 5699999987662 334443 357889999987654 55554 468999999876 12222
Q ss_pred -EEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCc
Q 003467 103 -VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC 181 (817)
Q Consensus 103 -~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 181 (817)
.+.........+++.+.+. .+.++-...+.
T Consensus 70 ~~~~~~~~~p~glavd~~~~-------------------------------------------------~ly~~d~~~~~ 100 (316)
T 1ijq_A 70 TVISRDIQAPDGLAVDWIHS-------------------------------------------------NIYWTDSVLGT 100 (316)
T ss_dssp EEECSSCSCCCEEEEETTTT-------------------------------------------------EEEEEETTTTE
T ss_pred EEEeCCCCCcCEEEEeecCC-------------------------------------------------eEEEEECCCCE
Confidence 2222223446777776442 24445566788
Q ss_pred EEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC--CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEe
Q 003467 182 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL 259 (817)
Q Consensus 182 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d--g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v 259 (817)
|.+++... .... ..+.........++++|.+..|+..... +.|...++. |.....+.. ..-.....+
T Consensus 101 I~~~~~~g-~~~~--~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~-------~~~~~P~gl 169 (316)
T 1ijq_A 101 VSVADTKG-VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-------ENIQWPNGI 169 (316)
T ss_dssp EEEEETTS-SSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC-------SSCSCEEEE
T ss_pred EEEEeCCC-CceE--EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE-------CCCCCceEE
Confidence 88888863 3221 1112223467899999977766665543 678888874 554444431 233467889
Q ss_pred EEecCC-eEE-EEcCCCcEEEEeCCCCeEEEEeec---CccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 260 LSLRCG-TLV-SADSTGSVQFWDSRHGTLLQAHSF---HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 260 ~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
++.+++ +|. +-...+.|..+|... .....+.. .......+++. .+..+++-...+.|..++..++.
T Consensus 170 a~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 TLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 999765 554 445567899999873 33333321 22345678885 34444555567788888865554
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.00065 Score=71.27 Aligned_cols=243 Identities=11% Similarity=0.060 Sum_probs=134.2
Q ss_pred ceEEEEECC-CCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC-C----
Q 003467 15 PVVALATSA-DDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID-G---- 88 (817)
Q Consensus 15 ~I~~la~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d-~---- 88 (817)
.-..|+++| ++..|.++...+.|..+|+.++. ...+... .....+|+|+++++. |+.+... +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----v~~~~~~-~~~P~~ia~d~~G~~------lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----VSTVYSG-LSKVRTICWTHEADS------MIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----EEEEECC-CSCEEEEEECTTSSE------EEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----EEEEecC-CCCcceEEEeCCCCE------EEEEeCCCCcccc
Confidence 457889998 45566666555789999988764 2233222 467889999999985 6665542 1
Q ss_pred eEEEEECCCCeEE--EEEeecCceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCcccccc
Q 003467 89 SVSEWDLYDLKQK--IVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ 165 (817)
Q Consensus 89 ~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (817)
.+...+ ..+... ..+.. ......++++| ++
T Consensus 206 ~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g--------------------------------------------- 238 (430)
T 3tc9_A 206 NNYILT-RESGFKVITELTK-GQNCNGAETHPING--------------------------------------------- 238 (430)
T ss_dssp EEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTC---------------------------------------------
T ss_pred eEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCC---------------------------------------------
Confidence 233334 333222 22221 23345677777 44
Q ss_pred ccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEe-eCCCcEEEEECCC--Cce--EEE
Q 003467 166 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKL--GYE--IYR 240 (817)
Q Consensus 166 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~--g~~--~~~ 240 (817)
.++++-..++.|+.++..++.... ...... ...-..++|+|+|++|+.+ ...+.|..++... +.. ...
T Consensus 239 -----~lyv~d~~~~~V~~~~~~~~~~~~-~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~ 311 (430)
T 3tc9_A 239 -----ELYFNSWNAGQVFRYDFTTQETTP-LFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYI 311 (430)
T ss_dssp -----CEEEEETTTTEEEEEETTTTEEEE-EEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEE
T ss_pred -----EEEEEECCCCEEEEEECCCCcEEE-EEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEE
Confidence 245555567889999886433211 122221 2356789999999965555 4567899987653 222 222
Q ss_pred EEeecCCCCC-------CCceeEE-EeEEe--------cCCeEEEE-cCCCcEEEEeCCCCeEEEEeec----C----c-
Q 003467 241 ITVGLGGLGS-------GPELCIW-SLLSL--------RCGTLVSA-DSTGSVQFWDSRHGTLLQAHSF----H----K- 294 (817)
Q Consensus 241 ~~~~~~~~~~-------~~~~~v~-~v~~~--------~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~----h----~- 294 (817)
+....+.... ..-.... .++.. ++|.|..+ ...+.|+.++. +|........ . .
T Consensus 312 ~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG 390 (430)
T 3tc9_A 312 VCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDG 390 (430)
T ss_dssp EEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCE
T ss_pred EeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCC
Confidence 2211000000 0011122 44443 34554444 45677888884 4654333211 0 1
Q ss_pred --------cCeeEEEEecC-CCEEEEEccCCcEEEEEee
Q 003467 295 --------GDVNALAAAPS-HNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 295 --------~~v~~l~~s~~-~~~l~~~~~dg~i~iw~~~ 324 (817)
.....++++|+ +..+++-...+.|+.++++
T Consensus 391 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 391 DLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 14678999995 5444444456778877653
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.003 Score=65.54 Aligned_cols=224 Identities=13% Similarity=0.006 Sum_probs=135.7
Q ss_pred CCceEEEEECCCCCeEEEEe-cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-EeeCCCeE
Q 003467 13 PSPVVALATSADDSQVAAAR-EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF-SSSIDGSV 90 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~-s~~~d~~i 90 (817)
...+.+|+|.+.+..|..+. .++.|..+++............+... .....+|++.+.+.. |+ +-...+.|
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD~~~~~------lY~~d~~~~~I 183 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSN------IYWTDSVLGTV 183 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEETTTTE------EEEEETTTTEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEEecCCc------eEEEECCCCeE
Confidence 35678999998776666654 46788888887521000012233322 467889999985543 44 44557889
Q ss_pred EEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccC
Q 003467 91 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED 170 (817)
Q Consensus 91 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (817)
.+.+++.......+.........+++.|.+.
T Consensus 184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g------------------------------------------------- 214 (400)
T 3p5b_L 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHG------------------------------------------------- 214 (400)
T ss_dssp EEECTTTCSEEEEEECSSCCEEEEEEETTTT-------------------------------------------------
T ss_pred EEEeCCCCceEEEEeCCCCCcceEEEecccC-------------------------------------------------
Confidence 9999887655444444445578899998653
Q ss_pred CEEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCC
Q 003467 171 RRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGG 247 (817)
Q Consensus 171 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~ 247 (817)
.|.... ..+.|...++....... .....-.....|++++++..|+.+.. .+.|...|+. |.....+....
T Consensus 215 -~ly~td~~~~~~I~~~~~dG~~~~~---~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~-- 287 (400)
T 3p5b_L 215 -FMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDE-- 287 (400)
T ss_dssp -EEEEEECSSSCCEEEEETTSCSCEE---EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECS--
T ss_pred -eEEEEeCCCCCEEEEEeCCCCccEE---EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCC--
Confidence 333332 24678888776333221 11222346789999998888877754 5689999985 44444443210
Q ss_pred CCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEE
Q 003467 248 LGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA 302 (817)
Q Consensus 248 ~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 302 (817)
..-.....+++..+..+++-...+.|..+|..+|+.+..+.........+++
T Consensus 288 ---~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 288 ---KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp ---STTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred ---CCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 1223345666654446667777788999998788777766543333444443
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.09 E-value=0.0012 Score=68.26 Aligned_cols=217 Identities=10% Similarity=-0.060 Sum_probs=130.6
Q ss_pred CceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-EeeCCCeEE
Q 003467 14 SPVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF-SSSIDGSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~-s~~~d~~i~ 91 (817)
....+++|.+.+..|..+ ..++.|..+++.+.. ....+... .....+|++.+.+.. |+ +-...+.|.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~-~~~p~glavd~~~g~------lY~~d~~~~~I~ 184 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTG-LESPGGLAVDWVHDK------LYWTDSGTSRIE 184 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC----EEEEECSS-CSCCCCEEEETTTTE------EEEEETTTTEEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC----cEEEEeCC-CCCccEEEEEeCCCe------EEEEcCCCCeEE
Confidence 457789999866666555 456789999987764 23333322 345678899876543 44 444567899
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+.+++.......+.........+++.|.+..
T Consensus 185 ~~~~dg~~~~~l~~~~l~~P~giavdp~~g~------------------------------------------------- 215 (386)
T 3v65_B 185 VANLDGAHRKVLLWQSLEKPRAIALHPMEGT------------------------------------------------- 215 (386)
T ss_dssp ECBTTSCSCEEEECSSCSCEEEEEEETTTTE-------------------------------------------------
T ss_pred EEeCCCCceEEeecCCCCCCcEEEEEcCCCe-------------------------------------------------
Confidence 9888755433333333355678899887632
Q ss_pred EEEEEeCC-CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCC
Q 003467 172 RVALACDD-GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG 249 (817)
Q Consensus 172 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~ 249 (817)
+.++-... +.|..+++...... ......-.....|+|+|++..|+.+.. .+.|..+|+. |.....+..
T Consensus 216 ly~td~~~~~~I~r~~~dG~~~~---~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~------ 285 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGSGRR---IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVIS------ 285 (386)
T ss_dssp EEEEECSSSCEEEEEETTSCSCE---EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT-SCSCEEEEC------
T ss_pred EEEeccCCCCEEEEEeCCCCCcE---EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC-CCeeEEEEE------
Confidence 23333333 67777777533222 111222345789999988777776654 5689999975 433333331
Q ss_pred CCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEE
Q 003467 250 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALA 301 (817)
Q Consensus 250 ~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 301 (817)
........+++..+..+++-...+.|..+|..+|+.+..+.........++
T Consensus 286 -~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 286 -QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp -SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred -CCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 123345667774444566666778888888767776666654333333333
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.06 E-value=0.0025 Score=66.71 Aligned_cols=244 Identities=8% Similarity=-0.001 Sum_probs=132.2
Q ss_pred ceEEEEECCC--CCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCC---C-
Q 003467 15 PVVALATSAD--DSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSID---G- 88 (817)
Q Consensus 15 ~I~~la~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d---~- 88 (817)
.-.+|+++|+ +..|.++...+.|+.+|..++. ..++.+. .....+|+|+++|++ +++-... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-----v~~~~~~-~~~P~giavd~dG~l------yVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-----VDIKTTN-IGQCADVNFTLNGDM------VVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-----EEEECCC-CSCEEEEEECTTCCE------EEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-----EEEeecC-CCCccEEEECCCCCE------EEEcCCCCcccc
Confidence 3568999995 4455565544889999997775 3344433 467899999999874 4443321 1
Q ss_pred eEEEEECCCCeEE-EEEeecCceEEEEeeec-CCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccc
Q 003467 89 SVSEWDLYDLKQK-IVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS 166 (817)
Q Consensus 89 ~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (817)
.+...+...+... ..+. .......++++| ++
T Consensus 208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G---------------------------------------------- 240 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNG---------------------------------------------- 240 (433)
T ss_dssp EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTC----------------------------------------------
T ss_pred eEEEEECCCCeecccccc-ccCCCCEEEEeCCCC----------------------------------------------
Confidence 1333332221110 1111 122234455665 33
Q ss_pred cccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECC--CCce--EEEE
Q 003467 167 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK--LGYE--IYRI 241 (817)
Q Consensus 167 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~--~g~~--~~~~ 241 (817)
.+.++-..++.|+.++..++........... ...-..++|+|+|++|+.+. ..+.|+.++.. ++.. ...+
T Consensus 241 ----~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 241 ----KIYYTRYHHAMISSYDPATGTLTEEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp ----CEEECBTTCSEEEEECTTTCCEEEEEEECSC-CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred ----eEEEEECCCCEEEEEECCCCeEEEEEeccCC-CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence 2344444567788888764443111111111 12234699999999665554 46789998765 3322 1222
Q ss_pred EeecCCCC-------CCCceeEEEeEE---------ecCCeE-EEEcCCCcEEEEeCCCCeEEEEeecC-----------
Q 003467 242 TVGLGGLG-------SGPELCIWSLLS---------LRCGTL-VSADSTGSVQFWDSRHGTLLQAHSFH----------- 293 (817)
Q Consensus 242 ~~~~~~~~-------~~~~~~v~~v~~---------~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~h----------- 293 (817)
....+... ...-.....+++ .++|.| ++-...+.|+.++. +|... ++.+.
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG 393 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDG 393 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCC
Confidence 21101000 001223567888 666755 44455678999985 46443 33221
Q ss_pred -------ccCeeEEEEe-cCCCEEEEEccCCcEEEEEee
Q 003467 294 -------KGDVNALAAA-PSHNRVFSTGSDGQVILYKAS 324 (817)
Q Consensus 294 -------~~~v~~l~~s-~~~~~l~~~~~dg~i~iw~~~ 324 (817)
-.....|+++ +++..+++=...+.|+.++++
T Consensus 394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1236689999 556544444557778877653
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.03 E-value=0.0041 Score=62.21 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=125.3
Q ss_pred CceEEEEECCCCCeEEEE-ecCCcEEEEecCCC---CCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEE-EeeCCC
Q 003467 14 SPVVALATSADDSQVAAA-REDGSLEIWLVSPG---TSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLF-SSSIDG 88 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~-~~dg~i~iwd~~~~---~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~-s~~~d~ 88 (817)
....+++|.+++..|..+ ..++.|..+++.+. .. ....+... -....+|++.+.+.. |+ +-...+
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~---~~~~~~~~-~~~p~glavd~~~~~------ly~~d~~~~ 99 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRD-IQAPDGLAVDWIHSN------IYWTDSVLG 99 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSS-CSCCCEEEEETTTTE------EEEEETTTT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc---cEEEEeCC-CCCcCEEEEeecCCe------EEEEECCCC
Confidence 346789999877666655 44688999998761 21 12233322 245678999875543 54 445678
Q ss_pred eEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 89 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 89 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
.|.+.++........+.........+++.|.+.
T Consensus 100 ~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g----------------------------------------------- 132 (316)
T 1ijq_A 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG----------------------------------------------- 132 (316)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTT-----------------------------------------------
T ss_pred EEEEEeCCCCceEEEEECCCCCcceEEeCCCCC-----------------------------------------------
Confidence 999999876544333333445668899998663
Q ss_pred cCCEEEEEe-CC-CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeec
Q 003467 169 EDRRVALAC-DD-GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 169 ~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
.|..+. .. +.|...++. +..... .....-.....+++++++..|+.+.. .+.|..+|+. |.....+....
T Consensus 133 ---~ly~~d~~~~~~I~~~~~d-G~~~~~--~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~ 205 (316)
T 1ijq_A 133 ---FMYWTDWGTPAKIKKGGLN-GVDIYS--LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDE 205 (316)
T ss_dssp ---EEEEEECSSSCEEEEEETT-SCCEEE--EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECT
T ss_pred ---EEEEEccCCCCeEEEEcCC-CCCeEE--EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecC
Confidence 333333 22 677777775 333211 11122346789999998887776654 5689999986 44444443210
Q ss_pred CCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 246 GGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 246 ~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
........+++..+..+++-...+.|..+|..+|+.+..+.
T Consensus 206 -----~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 206 -----KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp -----TTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -----CccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 11223456666543356666667788888887777665554
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.00 E-value=0.00013 Score=83.00 Aligned_cols=194 Identities=10% Similarity=0.010 Sum_probs=109.3
Q ss_pred cEEEEEEe-ecCCCCCCCceEEEee-CC----CeEEEEECCCC-eEEE-EEeecCceEEEEeeecCCCccceeeccCccc
Q 003467 62 RISSLVWC-HAGKMGLPGGRLFSSS-ID----GSVSEWDLYDL-KQKI-VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI 133 (817)
Q Consensus 62 ~V~~l~~s-~~~~~~~~~~~l~s~~-~d----~~i~vwd~~~~-~~~~-~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~ 133 (817)
.+.+.+|| |||++ ||.+. .+ .+|.++|+.+| +.+. .+. .....++|+||+.
T Consensus 175 ~~~~~~~S~PDG~~------lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~------------ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDL------VAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHT------------ 233 (751)
T ss_dssp EEEEEEECTTTTCE------EEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTT------------
T ss_pred EEeeeEecCCCCCE------EEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCC------------
Confidence 78899999 99987 66432 22 35999999998 6321 111 1234678999985
Q ss_pred cCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC-----CcEEEEEecCCCce-eEeeccCCccceEE
Q 003467 134 GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD-----GCVRIYRITDSDEL-IYHRSLPRVSGRVL 207 (817)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~-~~~~~~~~h~~~v~ 207 (817)
.|+....+ ..|+++++.++... ...... .......
T Consensus 234 --------------------------------------~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~ 274 (751)
T 2xe4_A 234 --------------------------------------SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNPLFSA 274 (751)
T ss_dssp --------------------------------------EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCTTCEE
T ss_pred --------------------------------------EEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCCceEE
Confidence 33333332 25777777654321 111111 2233567
Q ss_pred EEEEccCCCEEEEeeC---CCcEEEEECCCCc-eE--EEEEeecCCCCCCCceeEEEeEEecCCeE-EEEcCC----CcE
Q 003467 208 SVTWSADGNMLYSGSS---DGYIRSWDAKLGY-EI--YRITVGLGGLGSGPELCIWSLLSLRCGTL-VSADST----GSV 276 (817)
Q Consensus 208 ~v~~s~dg~~l~s~~~---dg~i~vwd~~~g~-~~--~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~s~~~d----g~i 276 (817)
.+.|+|||++|+..+. ...|.++|+.++. .. ..+.. ......+++.|..++.| +....+ ..|
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-------~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L 347 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-------REKGVRYDVQMHGTSHLVILTNEGGAVNHKL 347 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-------CCTTCCEEEEEETTTEEEEEECTTTCTTCEE
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-------CCCCceEEEeeeeCCEEEEEeCCCCCCCcEE
Confidence 8899999999887653 3468889988763 22 22221 23445566665555544 444433 357
Q ss_pred EEEeCCCCeEEEE-eecCccC--eeEEEEecCCCEE-EEEccCCcEEEEEee
Q 003467 277 QFWDSRHGTLLQA-HSFHKGD--VNALAAAPSHNRV-FSTGSDGQVILYKAS 324 (817)
Q Consensus 277 ~iwd~~~~~~~~~-~~~h~~~--v~~l~~s~~~~~l-~~~~~dg~i~iw~~~ 324 (817)
..+|+.++..... +..+... +..+.+ +++.| ++...++..++|-+.
T Consensus 348 ~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 348 LIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEE
T ss_pred EEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEe
Confidence 7777765222222 2333433 344444 44444 556667766665543
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.94 E-value=0.002 Score=64.35 Aligned_cols=208 Identities=13% Similarity=0.007 Sum_probs=126.3
Q ss_pred ceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEE
Q 003467 15 PVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEW 93 (817)
Q Consensus 15 ~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vw 93 (817)
...+++|.+.+..|..+ ..++.|..+++.++... ...+... -....++++.+.+.. ..++-...+.|.+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~---~~~~~~~-l~~p~glavd~~~g~-----ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---QNVVVSG-LLSPDGLACDWLGEK-----LYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---CEEEEEC-CSCCCEEEEETTTTE-----EEEEETTTTEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---EEEEcCC-CCCccEEEEEcCCCe-----EEEEECCCCEEEEE
Confidence 35688898865555544 45678989998765321 1112111 245678999875543 13444456789999
Q ss_pred ECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 94 DLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 94 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
+++.......+.........+++.|.+. .|
T Consensus 107 ~~dG~~~~~l~~~~~~~P~giavdp~~g--------------------------------------------------~l 136 (318)
T 3sov_A 107 NLDGSLRKVLFWQELDQPRAIALDPSSG--------------------------------------------------FM 136 (318)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEEGGGT--------------------------------------------------EE
T ss_pred ECCCCcEEEEEeCCCCCccEEEEeCCCC--------------------------------------------------EE
Confidence 9876443333333445567888888652 44
Q ss_pred EEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 174 ALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 174 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
..+. ..+.|...++....... .....-..-..++|++++..|+.+.. .+.|..+|+. |.....+..
T Consensus 137 y~td~~~~~~I~r~~~dG~~~~~---~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~------- 205 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSSRFI---IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVK------- 205 (318)
T ss_dssp EEEECSSSCEEEEEETTSCSCEE---EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC-------
T ss_pred EEEecCCCCEEEEEEcCCCCeEE---EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCceEEEec-------
Confidence 4443 35677777775322211 11122345689999998887777654 5789999985 444444431
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
........+++..++.+++-...+.|..++..+|+....+..
T Consensus 206 ~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 206 GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 123344566776555667766778899999877876665543
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.90 E-value=0.011 Score=61.24 Aligned_cols=228 Identities=10% Similarity=-0.035 Sum_probs=135.9
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEEEEECCCC----eE
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVSEWDLYDL----KQ 100 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~----~~ 100 (817)
.+|..+.. ..|+..++..... ...+.+ ...+.+|+|.+.+.. |+.+. ..+.|..+++... ..
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~----~~~~~~--~~~~~~l~~d~~~~~------lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEY----TSLIPN--LRNVVALDTEVASNR------IYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSC----EEEECS--CSCEEEEEEETTTTE------EEEEETTTTEEEEEEC------CCC
T ss_pred ceeEEecc-ceeEEEccCCcce----eEeccc--cCcceEEeeeeccCc------eEEEecCCCeEEEEEcccCCCCCcc
Confidence 35555543 6799999887652 333433 467899999987654 65554 4678999998752 22
Q ss_pred EEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 101 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 101 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
...+.........+++.+.+. .+.++-...+
T Consensus 151 ~~~~~~~~~~p~glavD~~~~-------------------------------------------------~lY~~d~~~~ 181 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHS-------------------------------------------------NIYWTDSVLG 181 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTT-------------------------------------------------EEEEEETTTT
T ss_pred eEEEeCCCCCcccEEEEecCC-------------------------------------------------ceEEEECCCC
Confidence 233332334567788887442 2444555677
Q ss_pred cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEE
Q 003467 181 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS 258 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~ 258 (817)
.|.+.++...... ..+...-.....|++.|.+.+|+.... .+.|...++. |.....+.. ..-.....
T Consensus 182 ~I~~~~~~g~~~~---~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~-------~~l~~P~g 250 (400)
T 3p5b_L 182 TVSVADTKGVKRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-------ENIQWPNG 250 (400)
T ss_dssp EEEEECTTTCSEE---EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEEC-------SSCSCEEE
T ss_pred eEEEEeCCCCceE---EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEE-------CCCCceEE
Confidence 8888887633322 112222345789999997777766543 3688888875 444444431 23356788
Q ss_pred eEEecCC-eEEEE-cCCCcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 259 LLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 259 v~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
|++.+++ +|..+ ...+.|..+|+........... .-.....+++. .+..+++-...+.|..++..++.
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 9999765 55444 4567899999874332222222 22345677774 33344455567788888865554
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.88 E-value=0.0054 Score=61.16 Aligned_cols=195 Identities=9% Similarity=0.012 Sum_probs=115.9
Q ss_pred CCeEEEEecCCCcEEEEEc--CCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEE-ecCCcEEEEE
Q 003467 492 RKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVD 568 (817)
Q Consensus 492 ~~i~~~~~s~~g~~la~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~-~~dg~i~v~d 568 (817)
.....++|.+.+..|..++ .+.|..+++.. .......+ .........+++.+.+..|+.. ...+.|.+++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g--~~~~~~~~-----~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~ 107 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--TESVQNVV-----VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 107 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTS--SSCCCEEE-----EECCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccC--CCceEEEE-----cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence 4567888988665555543 35555555443 11111111 1122356789999866655555 4567899999
Q ss_pred ccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCCCCeEEEEecC
Q 003467 569 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP 646 (817)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp 646 (817)
++. .....+... .......+++.|.+.+|..++. .+.|..++++.......+.. .-...+.++|+|
T Consensus 108 ~dG-~~~~~l~~~----------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~l~~Pnglavd~ 175 (318)
T 3sov_A 108 LDG-SLRKVLFWQ----------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS-EIYWPNGLTLDY 175 (318)
T ss_dssp TTS-CSCEEEECS----------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEET
T ss_pred CCC-CcEEEEEeC----------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC-CCCCccEEEEec
Confidence 864 333333210 3456789999998777777763 57899999876543333322 224689999999
Q ss_pred CCCCeEEEEec-CCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEE-EcCceEEEEEc
Q 003467 647 QNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVII-YSARAMCVIDF 720 (817)
Q Consensus 647 ~d~~~l~~~~~-d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~-~~~~~~~~~d~ 720 (817)
++..|..+.. .+.|..+|++......+ +.+......++++..+ ..+|. ++...+.++|.
T Consensus 176 -~~~~lY~aD~~~~~I~~~d~dG~~~~~~-----------~~~~~~~P~glav~~~---~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 176 -EEQKLYWADAKLNFIHKSNLDGTNRQAV-----------VKGSLPHPFALTLFED---ILYWTDWSTHSILACNK 236 (318)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSCCSCEEEEEEETT---EEEEEETTTTEEEEEET
T ss_pred -cCCEEEEEECCCCEEEEEcCCCCceEEE-----------ecCCCCCceEEEEeCC---EEEEEecCCCeEEEEEC
Confidence 7777777754 56899999986543111 1112345567777532 22222 24456777776
No 293
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0045 Score=60.99 Aligned_cols=187 Identities=13% Similarity=0.205 Sum_probs=119.5
Q ss_pred ceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCC----CccceeeccCccccCccccCCCCCCCCccccccC
Q 003467 79 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSN----SSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE 154 (817)
Q Consensus 79 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (817)
.+++.....+-+.++|+ +|+.++.+.. +.+..+..-|+- ...
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~------------------------------- 86 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKV------------------------------- 86 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEE-------------------------------
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceE-------------------------------
Confidence 34555566778999999 8898988863 567777766631 100
Q ss_pred CCCCCccccccccccCCEEEEEe-C--CCcEEEEEec-CCCceeEeecc--C-Ccc-ceEEEEEE--ccC-CC-EEEEee
Q 003467 155 NDSDSDELHEQSVVEDRRVALAC-D--DGCVRIYRIT-DSDELIYHRSL--P-RVS-GRVLSVTW--SAD-GN-MLYSGS 222 (817)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~-~--dg~i~iwd~~-~~~~~~~~~~~--~-~h~-~~v~~v~~--s~d-g~-~l~s~~ 222 (817)
.++++.. . ++.|++|++. ....+...... . +.. ..+..+|+ +|. ++ ++++..
T Consensus 87 ----------------dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~ 150 (355)
T 3amr_A 87 ----------------DIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG 150 (355)
T ss_dssp ----------------EEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC
T ss_pred ----------------eEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC
Confidence 0233333 3 5799999884 22234222111 1 011 45666777 664 44 688888
Q ss_pred CCCcEEEEECC-------CCceEEEEEeecCCCCCCCceeEEEeEEecC-CeEEEEcCCCcEEEEeCC-----CCeEEEE
Q 003467 223 SDGYIRSWDAK-------LGYEIYRITVGLGGLGSGPELCIWSLLSLRC-GTLVSADSTGSVQFWDSR-----HGTLLQA 289 (817)
Q Consensus 223 ~dg~i~vwd~~-------~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~dg~i~iwd~~-----~~~~~~~ 289 (817)
.+|.+..|++. +++.++++.. ...+..+.+.+. ++|..+-++.-|..++.+ +++.+..
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~ 221 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR 221 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecC---------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE
Confidence 89999999883 3455666653 235667777764 489999998778778865 3556665
Q ss_pred ee-c-CccCeeEEEEe--cCCC-EEEEEc-cCCcEEEEEee
Q 003467 290 HS-F-HKGDVNALAAA--PSHN-RVFSTG-SDGQVILYKAS 324 (817)
Q Consensus 290 ~~-~-h~~~v~~l~~s--~~~~-~l~~~~-~dg~i~iw~~~ 324 (817)
+. + -..++..|++. ++++ +|++++ .+.+..+|+..
T Consensus 222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 53 2 23578888884 5555 666655 57799999986
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0068 Score=63.45 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=42.9
Q ss_pred eEEEeEEecC---CeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEcc
Q 003467 255 CIWSLLSLRC---GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 314 (817)
Q Consensus 255 ~v~~v~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~ 314 (817)
....+++.|+ +.|..++..+.|+.+|..+++..... ........++++++|+ |+++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcC
Confidence 4567899985 67777766689999999877765443 3455688999999999 555543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.017 Score=60.58 Aligned_cols=249 Identities=10% Similarity=-0.001 Sum_probs=139.6
Q ss_pred ceEEEEECCC-CC-eEEEEecCCcEEEEecCCCCCCcEEEEEEc-CC--CCCcEEEEEE-------eecCCCCCCCceEE
Q 003467 15 PVVALATSAD-DS-QVAAAREDGSLEIWLVSPGTSGWHCQLTVH-GD--PKSRISSLVW-------CHAGKMGLPGGRLF 82 (817)
Q Consensus 15 ~I~~la~spd-g~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-g~--~~~~V~~l~~-------s~~~~~~~~~~~l~ 82 (817)
.-..|+|.|. .. ++++....+.|++.|..++. +.++. .. .-.....|+| +++++. |+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~------ly 208 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY------MI 208 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE------EE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCCcEEEEeecccccCCCCCE------EE
Confidence 4678999993 44 44444445678889988765 33332 21 1236899999 999985 66
Q ss_pred EeeCCC-------eEEEEECCC-CeEE-----EEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcc
Q 003467 83 SSSIDG-------SVSEWDLYD-LKQK-----IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE 149 (817)
Q Consensus 83 s~~~d~-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (817)
.+...+ .|.+.+... |... ..+... .....++++|++.
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g---------------------------- 259 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPING---------------------------- 259 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTC----------------------------
T ss_pred EEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCC----------------------------
Confidence 665543 255665333 2221 222211 2234566677442
Q ss_pred ccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEec-------CCCc-----------eeEeeccCCccceEEEEEE
Q 003467 150 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRIT-------DSDE-----------LIYHRSLPRVSGRVLSVTW 211 (817)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-----------~~~~~~~~~h~~~v~~v~~ 211 (817)
.++++-..++.|+.+|+. ++.. +...... +....-..|+|
T Consensus 260 ---------------------~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~ 317 (496)
T 3kya_A 260 ---------------------ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFI 317 (496)
T ss_dssp ---------------------CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEE
T ss_pred ---------------------eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEE
Confidence 256666678889999987 4432 1111112 22345679999
Q ss_pred ccCCCEEEEe-eCCCcEEEEECC--CCce--EEEEEeecCCCC-------CCCceeEE-EeEEe-------cCCe-EEEE
Q 003467 212 SADGNMLYSG-SSDGYIRSWDAK--LGYE--IYRITVGLGGLG-------SGPELCIW-SLLSL-------RCGT-LVSA 270 (817)
Q Consensus 212 s~dg~~l~s~-~~dg~i~vwd~~--~g~~--~~~~~~~~~~~~-------~~~~~~v~-~v~~~-------~~~~-l~s~ 270 (817)
+|+|++|+.+ +..+.|+.++.. ++.. ...+....+... ...-.... .++.. +++. +++-
T Consensus 318 ~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred cCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 9999965555 456788886643 3322 122221101000 00111233 34444 4564 4555
Q ss_pred cCCCcEEEEeCCCCeEEEEeecC------------------------ccCeeEEEEecC-CCEEEEEccCCcEEEEEeec
Q 003467 271 DSTGSVQFWDSRHGTLLQAHSFH------------------------KGDVNALAAAPS-HNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~l~~s~~-~~~l~~~~~dg~i~iw~~~~ 325 (817)
...+.|+.++. +|. +.++.+. -.....|+++++ +..+++=.....|+.+++..
T Consensus 398 ~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 398 RLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp GGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 56778999984 464 4444322 023568999997 65444445578899998876
Q ss_pred cc
Q 003467 326 ES 327 (817)
Q Consensus 326 ~~ 327 (817)
..
T Consensus 476 ~~ 477 (496)
T 3kya_A 476 EE 477 (496)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 296
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.75 E-value=0.029 Score=56.48 Aligned_cols=223 Identities=15% Similarity=0.193 Sum_probs=133.0
Q ss_pred CeEEEEecCCCcEEEEEcCCceEEEEeecCCCCCc------eEEEeeecCCc----cccceeEEEEec---CCCEEEEEe
Q 003467 493 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQG------EWIINKRQLPR----KLQFAHSMIFSY---DSSQLIIAG 559 (817)
Q Consensus 493 ~i~~~~~s~~g~~la~~~~~~i~l~~~~~~~~~~~------~~~~~~~~~~~----~~~~i~~~~fsp---d~~~l~~~~ 559 (817)
.+..+.+||+|++||..++..|.+..+........ ..+.....+.. ...+|..+.|+| .+..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 57789999999999999999999999984211111 01111111111 234799999999 467899999
Q ss_pred cCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEe--CCCcEEEEEC--------C----
Q 003467 560 HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN--CFGDVYIFNL--------E---- 623 (817)
Q Consensus 560 ~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--~dg~i~vwd~--------~---- 623 (817)
.|+.|++||+.... .. .+...... -........|.+++|++++-.|...+ ..|.|+-.-. .
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~--fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~~~~s~i 223 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNS--FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLLLNEKDL 223 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSE--EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEECCHHHH
T ss_pred cCCEEEEEEcccCCCCCc-chhccccc--cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCccccccCHHHH
Confidence 99999999997532 22 33211000 01122447899999999988777755 7787764321 0
Q ss_pred ----------------------------------------C-cceEEE---------------EecCC-C------CCeE
Q 003467 624 ----------------------------------------I-QRQHWF---------------ISRLE-G------ASVT 640 (817)
Q Consensus 624 ----------------------------------------~-~~~~~~---------------~~~~~-~------~~i~ 640 (817)
. ...... +..+. . ..+.
T Consensus 224 ~~L~~ks~~~~~~l~~~~~~~~k~~~~qQl~~~s~L~~q~~~~~~~~~i~~~~r~~~~qgpf~i~P~P~elY~~~A~~i~ 303 (452)
T 3pbp_A 224 NLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHENWNSRFGKVDIQKEYRLAKVQGPFTINPFPGELYDYTATNIA 303 (452)
T ss_dssp HHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHHHHHHHHCBTTTTEEECCGGGGCCCCBCCCEEETCCSGGGGSCEEEEE
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCchHHhcccccCceecCCCchhhccccccceE
Confidence 0 000001 11111 0 1233
Q ss_pred EEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcc-----cCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceE
Q 003467 641 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQH-----TFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM 715 (817)
Q Consensus 641 ~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~-----~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~ 715 (817)
.+...+.....|+++..||+|.++--...-.-.|..++ .+.+...+.- ...+..+.-.| +...++.+.+.+.+
T Consensus 304 ~lpi~~~~~~ll~i~f~dG~v~~l~~d~e~~msW~~~~~~~~nSl~lvE~i~l-~~~~~~~~~~~-~~~g~~~v~~~~~v 381 (452)
T 3pbp_A 304 TILIDNGQNEIVCVSFDDGSLILLFKDLEMSMSWDVDNYVYNNSLVLIERVKL-QREIKSLITLP-EQLGKLYVISDNII 381 (452)
T ss_dssp EEECSSSSCEEEEEEETTTEEEEEEECSCCCCCSSCTTBCSSCEEEEEEEEEC-CSCCCEEECCT-TSTTEEEEECSSEE
T ss_pred EEeccCCCceEEEEEecCCEEEEEecCCcccceeeccCCCCCCeEEEEEEEEc-ccchhheeecC-CCCceEEEeecCce
Confidence 34444423358999999999998855444444687442 2233333333 44555555555 45667888888888
Q ss_pred EEEEc
Q 003467 716 CVIDF 720 (817)
Q Consensus 716 ~~~d~ 720 (817)
..+|.
T Consensus 382 ~~vd~ 386 (452)
T 3pbp_A 382 QQVNF 386 (452)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88874
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.73 E-value=0.0067 Score=60.81 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=109.8
Q ss_pred eEEEEecCCCcEEEEE-------------cCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEec--CCC-EEEE
Q 003467 494 IICSTISNSGMLFAYS-------------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY--DSS-QLII 557 (817)
Q Consensus 494 i~~~~~s~~g~~la~~-------------~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--d~~-~l~~ 557 (817)
...+++.++|..++++ .++.|.++++.........+.+.........-....+.+.+ |+. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455677887766665 46777777765322222222222110111222456677655 454 4555
Q ss_pred Eec---CCcEEEEEccCC----ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-----------------
Q 003467 558 AGH---DRRIYVVDVSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC----------------- 613 (817)
Q Consensus 558 ~~~---dg~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~----------------- 613 (817)
+.. +.+|.+|+++.. ..+.++.+. .-...+.+++.++|.+.++.+.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~----------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCT----------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccC----------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 533 467888887643 223344431 2456889999999998887651
Q ss_pred CCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe-cCCeEEEEEcCC-CccccchhcccCccCcchhcCCC
Q 003467 614 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQEFPG 691 (817)
Q Consensus 614 dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~-~d~~i~vwd~~~-~~~~~ws~~~~~~~~~~~~~~~~ 691 (817)
.|.|+-++. ++........ ...+.++|+| |++.|.++. ..+.|..|+++. ++++. .+.+ ...+
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l--~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~---------~~~~-~~~g 266 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGF--DFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTP---------LRVL-SFDT 266 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEE--SSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEE---------EEEE-ECSS
T ss_pred ccEEEEEEC--CeEEEeecCC--cccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEec---------CEEE-eCCC
Confidence 244555554 4433333322 3679999999 998887775 567999999964 34321 1122 2356
Q ss_pred ceeEEEECC-CCCCCEEEE
Q 003467 692 EVIGLSFSP-SPSSSSVII 709 (817)
Q Consensus 692 ~v~~l~f~p-~~~~~~~~~ 709 (817)
..-+++.++ +|+ +|+
T Consensus 267 ~PDGi~vD~e~G~---lwv 282 (355)
T 3sre_A 267 LVDNISVDPVTGD---LWV 282 (355)
T ss_dssp EEEEEEECTTTCC---EEE
T ss_pred CCceEEEeCCCCc---EEE
Confidence 788999998 466 766
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.71 E-value=0.015 Score=65.47 Aligned_cols=212 Identities=14% Similarity=0.015 Sum_probs=125.5
Q ss_pred CceEEEEECCCCCeEEEE-ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEE-eeCCCeEE
Q 003467 14 SPVVALATSADDSQVAAA-REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFS-SSIDGSVS 91 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s-~~~d~~i~ 91 (817)
..+.+|+|.+...+|..+ ..++.|..+++............+... .....+|++.+.+.. |+. -...+.|.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GLAvD~~~~~------LY~tD~~~~~I~ 496 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSN------IYWTDSVLGTVS 496 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTTTE------EEEEETTTTEEE
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-CCCcceeeeeecCCc------EEEEecCCCeEE
Confidence 467889999866655554 445778888887531100012333322 456778999987754 554 44568999
Q ss_pred EEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCC
Q 003467 92 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR 171 (817)
Q Consensus 92 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (817)
+.++........+.........|++.|...
T Consensus 497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g-------------------------------------------------- 526 (791)
T 3m0c_C 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHG-------------------------------------------------- 526 (791)
T ss_dssp EEETTSSSEEEEEECTTCCEEEEEEETTTT--------------------------------------------------
T ss_pred EEeCCCCeEEEEEeCCCCCcceEEEecCCC--------------------------------------------------
Confidence 999986554444444445678999998753
Q ss_pred EEEEEe--CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCC
Q 003467 172 RVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGL 248 (817)
Q Consensus 172 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~ 248 (817)
.|..+. ..+.|...++...... ..+...-.....|++++.+..|+.+.. .+.|...++. |.....+....
T Consensus 527 ~LYwtD~g~~~~I~~~~~dG~~~~---~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~~~--- 599 (791)
T 3m0c_C 527 FMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDE--- 599 (791)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECT---
T ss_pred CEEEecCCCCCeEEEEecCCCceE---EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEecCC---
Confidence 333332 2366777777533222 112223356889999988887777654 4679999985 44444443210
Q ss_pred CCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEee
Q 003467 249 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 291 (817)
Q Consensus 249 ~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (817)
..-....+|++..+..+++-...+.|...|..+|+.+..+.
T Consensus 600 --~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 600 --KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp --TTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred --CccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 11223346666544355555566778888877776665554
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.69 E-value=0.024 Score=63.80 Aligned_cols=238 Identities=11% Similarity=-0.023 Sum_probs=137.9
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEe-eCCCeEEE
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSS-SIDGSVSE 92 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~-~~d~~i~v 92 (817)
..-+|.++.+.. +|..+.. ..|+..++..... ...+.+ ...+.+|+|.+.+.. |+.+ ...+.|..
T Consensus 385 ~~~~C~~~~~~p-~Ll~an~-~~Ir~i~l~~~~~----~~l~~~--~~~~~gl~~d~~~~~------lY~sD~~~~~I~~ 450 (791)
T 3m0c_C 385 HTKACKAVGSIA-YLFFTNR-HEVRKMTLDRSEY----TSLIPN--LRNVVALDTEVASNR------IYWSDLSQRMICS 450 (791)
T ss_dssp SCCCCEETTSCC-EEEEECB-SSEEEECTTSCCC----EEEECS--CSSEEEEEEETTTTE------EEEEETTTTEEEE
T ss_pred CCceeeeccccc-ccccccc-cceeEeeccCCcc----eeeecC--CCceEEEeecccCCe------eEEeeccceeEEE
Confidence 344555554333 4555443 5688888876552 333443 357889999986544 5544 44678999
Q ss_pred EECCCC----eEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccc
Q 003467 93 WDLYDL----KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV 168 (817)
Q Consensus 93 wd~~~~----~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (817)
+++... .....+.........|++.+.+..
T Consensus 451 ~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~---------------------------------------------- 484 (791)
T 3m0c_C 451 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN---------------------------------------------- 484 (791)
T ss_dssp EEC--------CEEEECSSCSCCCEEEEETTTTE----------------------------------------------
T ss_pred EeccCCCCCcceeEEEecCCCCcceeeeeecCCc----------------------------------------------
Confidence 998753 222333323344566777766532
Q ss_pred cCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecC
Q 003467 169 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
+.++-...+.|.+.++....... .+...-.....|++.|.+.+|+.... .+.|.+.++. |.....+..
T Consensus 485 ---LY~tD~~~~~I~v~~ldG~~~~~---l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~--- 554 (791)
T 3m0c_C 485 ---IYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--- 554 (791)
T ss_dssp ---EEEEETTTTEEEEEETTSSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC---
T ss_pred ---EEEEecCCCeEEEEeCCCCeEEE---EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEe---
Confidence 45555667888888886333221 12223345789999998777766553 2678888875 555544442
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEE-cCCCcEEEEeCCCCeEEEEeec--CccCeeEEEEecCCCEEEEEc-cCCcEEEE
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTG-SDGQVILY 321 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw 321 (817)
..-.....|++.+.+ +|..+ ...+.|...++........+.. .-.....|++. +.+|+.+. ..+.|...
T Consensus 555 ----~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~ 628 (791)
T 3m0c_C 555 ----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 628 (791)
T ss_dssp ----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ----CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEE
Confidence 233567889998654 55544 4556799999874333333332 12334566664 44566554 45677777
Q ss_pred Eeeccc
Q 003467 322 KASCES 327 (817)
Q Consensus 322 ~~~~~~ 327 (817)
+..++.
T Consensus 629 dk~tG~ 634 (791)
T 3m0c_C 629 NRLTGS 634 (791)
T ss_dssp ETTTCC
T ss_pred eCCCCc
Confidence 655554
No 300
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.018 Score=60.31 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=93.5
Q ss_pred cEEEEEEee-cCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccC
Q 003467 62 RISSLVWCH-AGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 140 (817)
Q Consensus 62 ~V~~l~~s~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 140 (817)
....|+|+| ++.. |+.+...+.|..+|+.++...... ........++|++++.
T Consensus 138 ~P~~lavdp~~~g~------Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~------------------- 191 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH------LYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEAD------------------- 191 (430)
T ss_dssp CCCEEEEETTEEEE------EEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSS-------------------
T ss_pred CCCEEEECCCCCCe------EEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCC-------------------
Confidence 457888987 3433 666665588999999887654443 3556678899999984
Q ss_pred CCCCCCCccccccCCCCCCccccccccccCCEEEEEeC-CC----cEEEEEecCCCceeEeeccCCccceEEEEEEcc-C
Q 003467 141 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD-DG----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-D 214 (817)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d 214 (817)
+|.++.. ++ .+.+++.. +.... ...+. .......++++| +
T Consensus 192 -------------------------------~lyvad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~ 237 (430)
T 3tc9_A 192 -------------------------------SMIITNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPIN 237 (430)
T ss_dssp -------------------------------EEEEEECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTT
T ss_pred -------------------------------EEEEEeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCC
Confidence 3444432 11 23333332 22110 01111 122356788999 6
Q ss_pred CCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCe-E-EEEcCCCcEEEEeCC
Q 003467 215 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-L-VSADSTGSVQFWDSR 282 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-l-~s~~~dg~i~iwd~~ 282 (817)
|.++++-..++.|..++..++........ ........++|+|+|. | ++-...+.|..++..
T Consensus 238 g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-------~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 238 GELYFNSWNAGQVFRYDFTTQETTPLFTI-------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEEEC-------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEEEc-------CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 66666666678999999876654333321 1224467899999994 4 455567788887754
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.0031 Score=61.56 Aligned_cols=171 Identities=12% Similarity=0.184 Sum_probs=112.6
Q ss_pred ceeEEEEecCCCEEEEEe-cCCcEEEEEccCCceeee-eccCcccccccCCCCCCceeEEEE---ccCCCEEEEEeC---
Q 003467 542 FAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFT---SSDGQWLAAVNC--- 613 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~-~dg~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~---s~dg~~la~~~~--- 613 (817)
...+++|.+....|..++ ..++|..|+...+..... +..... . ......+..|.| .|+++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~-~----g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS-N----GDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC-S----SCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc-c----CCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 455788988666666665 689999999875544333 221000 0 001224688999 688888886552
Q ss_pred ----------CCcEEEEECC---CcceEEEEecC------------CCCCeEEEEecCCCCCeEEEEecC-CeEEEEEcC
Q 003467 614 ----------FGDVYIFNLE---IQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSS-NQVYVFDVE 667 (817)
Q Consensus 614 ----------dg~i~vwd~~---~~~~~~~~~~~------------~~~~i~~l~~sp~d~~~l~~~~~d-~~i~vwd~~ 667 (817)
+..|..||+. +++..+..... .......++..+ +|+..++.+.. +.|..++.+
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 6779999999 77776655321 112478999999 99988888888 888888887
Q ss_pred CCccccchhcccCccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEEcCCCCC
Q 003467 668 AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVD 725 (817)
Q Consensus 668 ~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d~~~~~~ 725 (817)
......|-...+ ........++|++.|+|+ ..++..+...+..||+..|..
T Consensus 168 G~~~~~~~~~~~------~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 168 GKTVSTFAWESG------NGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp SCCEEEEEECCC------CSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSC
T ss_pred CCEEeeeeecCC------CcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcc
Confidence 776655532211 111223577999999842 344444667799999887654
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.45 E-value=0.041 Score=53.74 Aligned_cols=158 Identities=10% Similarity=0.107 Sum_probs=99.3
Q ss_pred EEEEECCCCCeEEEEe-cCCcEEEEecCCCCCCcEEEEEEcC-----CCCCcEEEEEE---eecCCCCCCCceEEEee--
Q 003467 17 VALATSADDSQVAAAR-EDGSLEIWLVSPGTSGWHCQLTVHG-----DPKSRISSLVW---CHAGKMGLPGGRLFSSS-- 85 (817)
Q Consensus 17 ~~la~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~g-----~~~~~V~~l~~---s~~~~~~~~~~~l~s~~-- 85 (817)
.+++|.+...+|.+++ .+|+|..||...+.. ....+.+ .....+.+|.| .|++++ +++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~---~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL------~vv~~~~ 86 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH---FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRL------FAVMKNA 86 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCE---EEECCTTTCCSSCCSEEEEEEEESSSSSCCEE------EEEEEET
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeE---EEEecCCccccCCCcceeeEEEEeccCCCCcE------EEEEccc
Confidence 3577877555555554 789999999976542 1223332 11225689999 577654 55433
Q ss_pred -----------CCCeEEEEECC---CCeEEEEEe--ec-----------CceEEEEeeecCCCccceeeccCccccCccc
Q 003467 86 -----------IDGSVSEWDLY---DLKQKIVLQ--SI-----------DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL 138 (817)
Q Consensus 86 -----------~d~~i~vwd~~---~~~~~~~~~--~~-----------~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (817)
.+..|..+|+. +++.+.... .. ......|++.++|.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn----------------- 149 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN----------------- 149 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-----------------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-----------------
Confidence 26779999999 888776554 11 13578899999883
Q ss_pred cCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCC-CcEEEEEecCCCcee-Eeecc--CCccceEEEEEEccC
Q 003467 139 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD-GCVRIYRITDSDELI-YHRSL--PRVSGRVLSVTWSAD 214 (817)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~-~~~~~--~~h~~~v~~v~~s~d 214 (817)
..++++.. +.|...+.. +.... ..... .......+.|+++|+
T Consensus 150 ---------------------------------aYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pd 195 (334)
T 2p9w_A 150 ---------------------------------SYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPH 195 (334)
T ss_dssp ---------------------------------EEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETT
T ss_pred ---------------------------------EEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCC
Confidence 45555555 554444443 22221 11111 112234668999999
Q ss_pred CCEEEEeeCCCcEEEEECCC
Q 003467 215 GNMLYSGSSDGYIRSWDAKL 234 (817)
Q Consensus 215 g~~l~s~~~dg~i~vwd~~~ 234 (817)
|..|++....|.|..+|+.+
T Consensus 196 g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 196 SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTEEEEESSSSSEEEEECSS
T ss_pred CCEEEEEcCCCeEEEEcCCC
Confidence 99988887799999999874
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.44 E-value=0.077 Score=52.31 Aligned_cols=174 Identities=11% Similarity=0.158 Sum_probs=107.5
Q ss_pred CceEEEEECCC----CCe--E--EEEec--CCcEEEEecCCCCCCcEEEEEEcC------CCCCcEEEEEE--eecCCCC
Q 003467 14 SPVVALATSAD----DSQ--V--AAARE--DGSLEIWLVSPGTSGWHCQLTVHG------DPKSRISSLVW--CHAGKMG 75 (817)
Q Consensus 14 ~~I~~la~spd----g~~--l--a~~~~--dg~i~iwd~~~~~~~~~~~~~~~g------~~~~~V~~l~~--s~~~~~~ 75 (817)
+.++.+.+-|+ |+. | |+.+. +++|.++++...... ...+.. .....+..+|+ +|.+..
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~- 143 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---LQSMTDPDHPIATAINEVYGFTLYHSQKTGK- 143 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---EEECSCTTSCEECCCSSCCCEEEEECTTTCC-
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---eeeccccccCcCCCCCCeeEEEEEecCCCCc-
Confidence 56666666663 222 3 34455 688999977422211 223311 11256778888 664331
Q ss_pred CCCceEEEeeCCCeEEEEECC-------CCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCc
Q 003467 76 LPGGRLFSSSIDGSVSEWDLY-------DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDH 148 (817)
Q Consensus 76 ~~~~~l~s~~~d~~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (817)
.+++....+|.+..|++. +++.++++. .++.+..+++.+..
T Consensus 144 ---~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~---------------------------- 191 (355)
T 3amr_A 144 ---YYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEY---------------------------- 191 (355)
T ss_dssp ---EEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTT----------------------------
T ss_pred ---EEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCC----------------------------
Confidence 248888889999999982 345667766 35677788888765
Q ss_pred cccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCC--CceeEeecc--CCccceEEEEEE--ccCCC-EEEEe
Q 003467 149 ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDS--DELIYHRSL--PRVSGRVLSVTW--SADGN-MLYSG 221 (817)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~--~~h~~~v~~v~~--s~dg~-~l~s~ 221 (817)
..|.++-++.-|..++.... ........+ ..-...+..|++ .++++ +|++.
T Consensus 192 ----------------------g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 192 ----------------------GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp ----------------------TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred ----------------------CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 48999999866666664311 121222222 223346888887 55666 66666
Q ss_pred e-CCCcEEEEECC-CCceEEEEEeec
Q 003467 222 S-SDGYIRSWDAK-LGYEIYRITVGL 245 (817)
Q Consensus 222 ~-~dg~i~vwd~~-~g~~~~~~~~~~ 245 (817)
+ .+.++.+||.+ +.+.+..+....
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred cCCCCEEEEEECCCCCcEEEEEEecC
Confidence 6 46799999997 778888887543
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.41 E-value=0.015 Score=57.63 Aligned_cols=145 Identities=13% Similarity=0.036 Sum_probs=71.1
Q ss_pred CEEEEEeCC-----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-----CcEEEEECCCCceEEE
Q 003467 171 RRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAKLGYEIYR 240 (817)
Q Consensus 171 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~g~~~~~ 240 (817)
..++.|+.+ ..+.+||+.+..-. ....+......-.++.+ +++.++.|+.+ ..+.+||..+++-...
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWS-MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEE-EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEE-ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 355555543 35788888654322 22222211111122222 67777777754 4688999887654332
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCC-----CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
-. . .....-.++....+..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.||.+
T Consensus 191 ~~--~-----p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 191 TP--M-----ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD 263 (301)
T ss_dssp CC--C-----SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred CC--C-----CcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcC
Confidence 11 1 11111112222333356666553 468999998776543322111111111222366666777665
Q ss_pred C-----cEEEEEeec
Q 003467 316 G-----QVILYKASC 325 (817)
Q Consensus 316 g-----~i~iw~~~~ 325 (817)
+ .+.+||..+
T Consensus 264 ~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 264 GNSLLSSIECYDPII 278 (301)
T ss_dssp SSSBEEEEEEEETTT
T ss_pred CCcccccEEEEcCCC
Confidence 3 456666654
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.38 E-value=0.00072 Score=75.69 Aligned_cols=226 Identities=12% Similarity=-0.000 Sum_probs=123.4
Q ss_pred CceEEEEECCCCCeEEEEe-cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEE
Q 003467 14 SPVVALATSADDSQVAAAR-EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSE 92 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~v 92 (817)
..+.+|+|.+++..|..+. .++.|..+++.+..........+... .....+|++.+.+.. .+++-...+.|.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD~~~g~-----LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHSN-----IYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECCCSSSB-----CEECCTTTSCEEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEEeeCCc-----EEEEeccCCeEEE
Confidence 3456889998777777664 45789999887510000011112111 234567888865543 1444455678999
Q ss_pred EECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCE
Q 003467 93 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR 172 (817)
Q Consensus 93 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (817)
.++........+.........+++.|.+..+
T Consensus 480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~l------------------------------------------------- 510 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFM------------------------------------------------- 510 (699)
T ss_dssp EBSSSCCEEEECCCSSCCCCCEECCSSSSCC-------------------------------------------------
T ss_pred EecCCCceEEEEeCCCCCcceEEEccCCCcE-------------------------------------------------
Confidence 9987654433333223445667777765322
Q ss_pred EEEEe-CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEee-CCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 173 VALAC-DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 173 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
+++-. ..+.|..+++...... ..+...-.....|+|+|++..|+.+. ..+.|.++++. |.....+... .
T Consensus 511 y~td~~~~~~I~~~~~dG~~~~---~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~~~~~~~~--~--- 581 (699)
T 1n7d_A 511 YWTDWGTPAKIKKGGLNGVDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILED--E--- 581 (699)
T ss_dssp EECCCSSSCCEEBCCSSSCCCC---EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSCCEEECCC--S---
T ss_pred EEcccCCCCeEEEEeCCCCCee---EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCceEEEEec--C---
Confidence 22211 1256666666422211 11111223456799999876665554 45789999986 4333333210 0
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 303 (817)
........|++..+..+++....+.|..+|..+|+.+..+.........|++.
T Consensus 582 ~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 582 KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp SSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred CcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 11122344555555556666677889999998888887775433334444433
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.13 Score=53.88 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=42.7
Q ss_pred eEEEeEEecC--Ce-EEEEcCCCcEEEEeCCCCeEEEEeecC---ccCeeEEEE-------ecCCCEEEEEccCC
Q 003467 255 CIWSLLSLRC--GT-LVSADSTGSVQFWDSRHGTLLQAHSFH---KGDVNALAA-------APSHNRVFSTGSDG 316 (817)
Q Consensus 255 ~v~~v~~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~-------s~~~~~l~~~~~dg 316 (817)
....|+|.|. +. +++-...+.|++.|.+.+......... ......++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 4677899983 44 444444567999999977765544332 234788999 99999787776544
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.32 E-value=0.024 Score=57.41 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=56.2
Q ss_pred CceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEc--CCCCCcEEEEEEeec---CCCCCCCceEEEeeC-C
Q 003467 14 SPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVH--GDPKSRISSLVWCHA---GKMGLPGGRLFSSSI-D 87 (817)
Q Consensus 14 ~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~--g~~~~~V~~l~~s~~---~~~~~~~~~l~s~~~-d 87 (817)
..-..|+|.|||+++++ ..+|.|.+++ .++. .....+. .........|+|+|+ +.. |+.+.. .
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~------lYv~~~~~ 99 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPY------VYAYRTVA 99 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE------EEEEEEEC
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCE------EEEEEecC
Confidence 34578999999985555 5569999998 3331 1122221 111457899999998 443 444432 2
Q ss_pred -----CeEEEEECCCCe-----EE-EEEee---cCceEEEEeeecCC
Q 003467 88 -----GSVSEWDLYDLK-----QK-IVLQS---IDFSIWQMAVAPSN 120 (817)
Q Consensus 88 -----~~i~vwd~~~~~-----~~-~~~~~---~~~~i~~~~~s~~~ 120 (817)
+.|..++...+. .+ ..+.. .......++|.|+|
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG 146 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG 146 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC
Confidence 678888877542 11 11221 01123578888888
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.28 E-value=0.2 Score=50.67 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=48.1
Q ss_pred eeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeE--EEEee---cCccCeeEEEEecC---CCEEEEEccC------CcEE
Q 003467 254 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL--LQAHS---FHKGDVNALAAAPS---HNRVFSTGSD------GQVI 319 (817)
Q Consensus 254 ~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~s~~---~~~l~~~~~d------g~i~ 319 (817)
...+.++|.|+|.++.+...|.|.+++ .++. +..+. ........++++|+ +..|+++... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346789999999877778889999998 3442 22222 12356789999998 6666665442 5677
Q ss_pred EEEeec
Q 003467 320 LYKASC 325 (817)
Q Consensus 320 iw~~~~ 325 (817)
.|+...
T Consensus 109 r~~~~~ 114 (352)
T 2ism_A 109 RLRHLG 114 (352)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 777654
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.26 E-value=0.15 Score=49.18 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=60.4
Q ss_pred CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe
Q 003467 224 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 224 dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 303 (817)
+..|.|-|+.++....+... .-+.. -.+|...+++--...+++++|+++.+.++.+... .+|..=.|-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi-------~AdsA----IMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWi 115 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI-------SADSA----IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI 115 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC-------CCSEE----EECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEEC
T ss_pred CCEEEEEECCCCCCcccccc-------cccee----eeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEec
Confidence 34788899988776655442 23333 3367775555545788999999999999888764 577777777
Q ss_pred cCCCEEEEEccCCcEEEEEeec
Q 003467 304 PSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 304 ~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.+. .|+..+ +..|+-|++..
T Consensus 116 s~~-~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 116 SLN-TVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp SSS-EEEEEE-SSEEEEEESST
T ss_pred CCC-eEEEEc-CCcEEEEcccC
Confidence 554 444443 45899999876
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.24 E-value=0.065 Score=53.00 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=71.6
Q ss_pred CEEEEEeCCC-----cEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-------CcEEEEECCCCceE
Q 003467 171 RRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-------GYIRSWDAKLGYEI 238 (817)
Q Consensus 171 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-------g~i~vwd~~~g~~~ 238 (817)
..++.|+.++ .+.+||+.+.. ......+........++.+ +++.++.|+.+ ..+.+||..+++-.
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 4666666543 47778876443 2222222221111122222 56777777653 35889998876543
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC-----CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEc
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~ 313 (817)
..-.. . ....-.+++...+..++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.||
T Consensus 187 ~~~~~--p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG 259 (302)
T 2xn4_A 187 YIAEM--S-----TRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG 259 (302)
T ss_dssp EECCC--S-----SCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCC--c-----cccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECC
Confidence 32111 1 1111112233333356666553 3689999987654432211111111112223666667777
Q ss_pred cCC-----cEEEEEeecc
Q 003467 314 SDG-----QVILYKASCE 326 (817)
Q Consensus 314 ~dg-----~i~iw~~~~~ 326 (817)
.++ .+.+||..+.
T Consensus 260 ~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BCSSSBCCCEEEEETTTT
T ss_pred cCCCcccccEEEEcCCCC
Confidence 653 4777777653
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.21 E-value=0.00076 Score=75.51 Aligned_cols=220 Identities=10% Similarity=-0.039 Sum_probs=117.9
Q ss_pred CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee-CCCeEEEEECCC----CeEEEEEeecCc
Q 003467 35 GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS-IDGSVSEWDLYD----LKQKIVLQSIDF 109 (817)
Q Consensus 35 g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~~~~ 109 (817)
+.|++.++.+.. ....+.. ...+.+|+|.+.+.. |+.+. ..+.|..+++.+ ......+.....
T Consensus 386 ~~I~~id~~~~~----~~~~~~~--~~~p~gla~d~~~~~------Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 386 HEVRKMTLDRSE----YTSLIPN--LRNVVALDTEVASNR------IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp TC-CEECTTSCC----EECCSCC--CTTCCCCEEETTTTE------EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred cceEEEeCCCCc----ceeeecc--CcceEEEccccccCe------EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 578888887655 2222322 345678999987654 66554 457888888875 111111111111
Q ss_pred eEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecC
Q 003467 110 SIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD 189 (817)
Q Consensus 110 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 189 (817)
....|++.+.+. .++++-...+.|.++++..
T Consensus 454 ~P~glavD~~~g-------------------------------------------------~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 454 APDGLAVDWIHS-------------------------------------------------NIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp -CCCEECCCSSS-------------------------------------------------BCEECCTTTSCEEEEBSSS
T ss_pred CcceEEEEeeCC-------------------------------------------------cEEEEeccCCeEEEEecCC
Confidence 223455554332 2334444567788888763
Q ss_pred CCceeEeeccCCccceEEEEEEccCCCEEEEeeC--CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-e
Q 003467 190 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T 266 (817)
Q Consensus 190 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 266 (817)
. ... ..+.........++++|++.+|+.... .+.|.+.++. |.....+.. ..-.....|++.+++ +
T Consensus 485 ~-~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~-------~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 485 V-KRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT-------ENIQWPNGITLDLLSGR 553 (699)
T ss_dssp C-CEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESC-------SSCSSCCCEEECTTTCC
T ss_pred C-ceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEe-------CCCCCccEEEEeccCCE
Confidence 3 221 112222234567889987666665543 2678877764 333322211 122345678999865 4
Q ss_pred -EEEEcCCCcEEEEeCCCCeEEEEee--cCccCeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 267 -LVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 267 -l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
+++-...+.|..+++........+. ........|++..+ ..+++....+.|..++..++.
T Consensus 554 LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 4555566789999987432222222 11233455666543 334444556788888876554
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.17 E-value=0.1 Score=51.65 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=78.5
Q ss_pred CEEEEEeCC------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC---------CCcEEEEECCCC
Q 003467 171 RRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---------DGYIRSWDAKLG 235 (817)
Q Consensus 171 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~---------dg~i~vwd~~~g 235 (817)
..++.|+.+ ..+.+||..+.. ......+......-.++. -+++.++.|+. -..+.+||..+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 356666654 468888887543 222222221111112222 26677777764 245889999877
Q ss_pred ceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC-----CcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCC
Q 003467 236 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-----GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHN 307 (817)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~ 307 (817)
+-...-. . .....-.++... ++ .++.|+.+ ..+.+||..+.+-... +........++.+ +++
T Consensus 180 ~W~~~~~--~-----p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 249 (306)
T 3ii7_A 180 TWTELCP--M-----IEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI 249 (306)
T ss_dssp EEEEECC--C-----SSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE
T ss_pred eEEECCC--c-----cchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE
Confidence 5332211 1 111111122233 44 55665543 4588999987654322 2221222223333 667
Q ss_pred EEEEEccC-----CcEEEEEeecccCCCCCCCCCccccceEEEeeccccCC
Q 003467 308 RVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT 353 (817)
Q Consensus 308 ~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (817)
.++.||.+ ..+.+||..+ .+|..+..+....
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~---------------~~W~~~~~~~~~r 285 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTET---------------DKWVANSKVRAFP 285 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTT---------------TEEEEEEEEECCS
T ss_pred EEEEeCcCCCeeeeeEEEEcCCC---------------CeEEeCCCccccc
Confidence 77777754 4567777655 4587776655433
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.05 E-value=0.25 Score=47.72 Aligned_cols=247 Identities=9% Similarity=0.100 Sum_probs=147.8
Q ss_pred EEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC-
Q 003467 19 LATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD- 97 (817)
Q Consensus 19 la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~- 97 (817)
.-.+|..+.||.=. ..++.|+|+++.+. .....- ...|.-=.|-.+.. |+-.+ +..|.-|+++.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~k----lks~~~--~e~VvfWkWis~~~-------L~lVT-~taVyHWs~~~~ 136 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSK----MKAHTM--TDDVTFWKWISLNT-------VALVT-DNAVYHWSMEGE 136 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEE----EEEEEC--SSCEEEEEECSSSE-------EEEEE-SSEEEEEESSTT
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhh----hcceec--CCccEEEEecCCCe-------EEEEc-CCcEEEEcccCC
Confidence 34578888888754 67899999998762 333332 24676667765543 44444 35799999974
Q ss_pred CeEEEEEeecC----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 98 LKQKIVLQSID----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 98 ~~~~~~~~~~~----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
..+.+.++.|. ..|.....+++.+.++..+-.. ..+
T Consensus 137 s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~--------------------------------------~~~-- 176 (365)
T 2xzh_A 137 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA--------------------------------------QQN-- 176 (365)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE--------------------------------------ETT--
T ss_pred CCCceeeecchhcccceEEEEEECCCCCEEEEEeEec--------------------------------------cCC--
Confidence 45667776653 5677777788876543221100 000
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccC--C-CEEEEeeC---CCcEEEEECCCC---ceE-EEEEe
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--G-NMLYSGSS---DGYIRSWDAKLG---YEI-YRITV 243 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--g-~~l~s~~~---dg~i~vwd~~~g---~~~-~~~~~ 243 (817)
.-.|.+.+|..+.+. - +.+.+|.+.-..+...-+ . ..++.+.. .+.+++-++... ... .+-..
T Consensus 177 ---~v~G~mQLYS~er~~-s---Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~v 249 (365)
T 2xzh_A 177 ---RVVGAMQLYSVDRKV-S---QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 249 (365)
T ss_dssp ---EEEEEEEEEETTTTE-E---EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEE
T ss_pred ---ccceeEEEEeecccc-c---ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccc
Confidence 124778899886332 2 677888765544433211 1 13333332 157777777432 110 00011
Q ss_pred ecCCCCCCCceeEEEeEEecC-CeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRC-GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
+..-+......--.++..++. |.+..-+.-|.|.+||+++|.++..-+-....|...+-+.+..=++.....|.|.-..
T Consensus 250 di~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 250 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp EECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred eeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 000011122333345555543 4677778889999999999999988877777777666665555566667899888888
Q ss_pred eeccc
Q 003467 323 ASCES 327 (817)
Q Consensus 323 ~~~~~ 327 (817)
++...
T Consensus 330 v~~~~ 334 (365)
T 2xzh_A 330 VEEEN 334 (365)
T ss_dssp ECTTT
T ss_pred ECccc
Confidence 77665
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.03 E-value=0.067 Score=53.07 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=69.9
Q ss_pred CEEEEEeCC-----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-----CcEEEEECCCCceEEE
Q 003467 171 RRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAKLGYEIYR 240 (817)
Q Consensus 171 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~g~~~~~ 240 (817)
..++.|+.+ ..+.+||..+.. ......+......-.++.+ +++.++.|+.+ ..+.+||..+.+-...
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred EEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 455565533 467888886443 2222222221111222222 66777777754 4688999877653322
Q ss_pred EEeecCCCCCCCceeEEEeEEecCCeEEEEcCC-----CcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEEEEc
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADST-----GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFSTG 313 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~~~~ 313 (817)
-. .. ....-.+++...+..++.|+.+ ..+.+||..+.+-... +....... +++. -+++.++.||
T Consensus 200 ~~--~p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG 270 (308)
T 1zgk_A 200 TA--MN-----TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGG 270 (308)
T ss_dssp CC--CS-----SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred CC--CC-----CccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcC
Confidence 11 11 1111112223333356666554 4589999987654432 21111111 2222 2566666776
Q ss_pred cC-----CcEEEEEeec
Q 003467 314 SD-----GQVILYKASC 325 (817)
Q Consensus 314 ~d-----g~i~iw~~~~ 325 (817)
.+ ..+.+||..+
T Consensus 271 ~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDT 287 (308)
T ss_dssp BCSSCBCCEEEEEETTT
T ss_pred cCCCcccceEEEEcCCC
Confidence 54 3466666654
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.01 E-value=0.36 Score=48.75 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=49.1
Q ss_pred ceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCe-EEEEee---cCccCeeEEEEecC---CCEEEEEcc----C----Cc
Q 003467 253 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT-LLQAHS---FHKGDVNALAAAPS---HNRVFSTGS----D----GQ 317 (817)
Q Consensus 253 ~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~l~~s~~---~~~l~~~~~----d----g~ 317 (817)
-...+.++|.|+|.|+.+..+|.|+++|. +++ .+..+. ........|+++|+ +..|+++.. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34568999999998888888899999973 454 222221 12346789999998 556665543 2 56
Q ss_pred EEEEEeecc
Q 003467 318 VILYKASCE 326 (817)
Q Consensus 318 i~iw~~~~~ 326 (817)
|..|+....
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 777766543
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.00 E-value=0.048 Score=54.92 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=101.9
Q ss_pred EecCCCcEEEEEcCCceEEEEeecCCCCCceEEEeeecCCc--cccceeEEEEecCCCEEEEEecCCcEEEEEccCCcee
Q 003467 498 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR--KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL 575 (817)
Q Consensus 498 ~~s~~g~~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~ 575 (817)
....+|..+.++.++.+|..++... ..-+. ..++. ....+..+..||+|++||..+.. .|.|..+..+...
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~-----L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD-SLYHS-----LNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC-SSCEE-----EECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSC
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC-CcceE-----EecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCcccc
Confidence 4567788888888889998887641 12222 33442 23357889999999999998754 6999998633211
Q ss_pred ------------eeeccCcccccccCCCCCCceeEEEEccC---CCEEEEEeCCCcEEEEECCCcce-EEEEecCC----
Q 003467 576 ------------HTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVNCFGDVYIFNLEIQRQ-HWFISRLE---- 635 (817)
Q Consensus 576 ------------~~~~~~~~~~~~~~~~~~~~i~~l~~s~d---g~~la~~~~dg~i~vwd~~~~~~-~~~~~~~~---- 635 (817)
+++.-. ........+|..+.|+|- |..|++-..|+.|++||+..... ...+....
T Consensus 100 ~~~~~~~~~~q~~ty~l~-----~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg 174 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSID-----EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFG 174 (452)
T ss_dssp CCCHHHHHTTEEEEEEGG-----GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEE
T ss_pred CcccccccccceeEEEcC-----CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccC
Confidence 112210 000113578999999995 55899999999999999975221 11222111
Q ss_pred ----CCCeEEEEecCCCCCeEEEEe--cCCeEEEE
Q 003467 636 ----GASVTAAGFPPQNNNVLIITT--SSNQVYVF 664 (817)
Q Consensus 636 ----~~~i~~l~~sp~d~~~l~~~~--~d~~i~vw 664 (817)
-..|.+++|.+ ++-.|.+.+ ..|.|+-.
T Consensus 175 ~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 175 LDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred CCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 15789999999 888888866 77877654
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.95 E-value=0.26 Score=48.45 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=73.1
Q ss_pred CEEEEEeCC-----CcEEEEEecCCCc--eeEeeccCCccceEEEEEEccCCCEEEEeeCC-----CcEEEEECCCCceE
Q 003467 171 RRVALACDD-----GCVRIYRITDSDE--LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAKLGYEI 238 (817)
Q Consensus 171 ~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~g~~~ 238 (817)
..++.|+.+ ..+.+||..+... ......+......-.++.+ +++.++.|+.+ ..+.+||..+++-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 356666644 4688999876541 2222222222122222222 67777777654 36889998877644
Q ss_pred EEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC-----CcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEE
Q 003467 239 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST-----GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 312 (817)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~ 312 (817)
..-... ....-.+++.. ++ .++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.|
T Consensus 142 ~~~~~p-------~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 142 MLGDMQ-------TAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp EEEECS-------SCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred ECCCCC-------CCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 332211 11111122222 55 45666543 458999998766543321111111111222256666667
Q ss_pred ccC-----CcEEEEEeecc
Q 003467 313 GSD-----GQVILYKASCE 326 (817)
Q Consensus 313 ~~d-----g~i~iw~~~~~ 326 (817)
|.+ ..+.+||..+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CBCSSSBCCCEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCC
Confidence 664 35777776553
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.91 E-value=0.16 Score=50.14 Aligned_cols=142 Identities=11% Similarity=0.103 Sum_probs=69.8
Q ss_pred CEEEEEeCC-----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCC-----cEEEEECCCCceEEE
Q 003467 171 RRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYEIYR 240 (817)
Q Consensus 171 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~g~~~~~ 240 (817)
..++.|+.+ ..+.+||..+.. ......+......-.++.+ +++.++.|+.++ .+.+||..+.+-...
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred EEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 355666543 357888886543 2222222221111222222 567777777553 578889877654332
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcC-------CCcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-------TGSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~-------dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~ 310 (817)
-.. . ....-.+++.. ++ .++.|+. ...+.+||..+.+-... +........ ++. -+++.++
T Consensus 140 ~~~--p-----~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv 209 (302)
T 2xn4_A 140 APM--N-----TRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG-VGV-LNNLLYA 209 (302)
T ss_dssp CCC--S-----SCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTEEEE
T ss_pred CCC--C-----CcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccccc-EEE-ECCEEEE
Confidence 111 1 11111122223 45 4555543 24588999987654432 221111122 222 2566666
Q ss_pred EEccCC-----cEEEEEeec
Q 003467 311 STGSDG-----QVILYKASC 325 (817)
Q Consensus 311 ~~~~dg-----~i~iw~~~~ 325 (817)
.||.++ .+.+||..+
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTT
T ss_pred ECCCCCCcccceEEEEeCCC
Confidence 776643 577777655
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.91 E-value=0.19 Score=49.66 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=71.3
Q ss_pred CEEEEEeCC----CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC------CcEEEEECCCCceEEE
Q 003467 171 RRVALACDD----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYEIYR 240 (817)
Q Consensus 171 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~g~~~~~ 240 (817)
..++.|+.+ ..+.+||..+..- .....+......-.++.+ +++.++.|+.+ ..+.+||..+.+-...
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSW-YSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEE-EEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeE-EECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 356666644 5788888875432 222233221112222222 67777888765 4689999887754332
Q ss_pred EEeecCCCCCCCceeEEEeEEecCC-eEEEEcC---------CCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEE
Q 003467 241 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS---------TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 310 (817)
-. .. ....-.+++.. ++ .++.|+. ...+.+||..+.+-...-..........+..-+++.++
T Consensus 134 ~~--~p-----~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v 205 (306)
T 3ii7_A 134 PS--ML-----TQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFA 205 (306)
T ss_dssp CC--CS-----SCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred CC--Cc-----CCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEE
Confidence 11 11 11111122222 45 4555543 34588999988754333221111111112222566666
Q ss_pred EEccC-----CcEEEEEeec
Q 003467 311 STGSD-----GQVILYKASC 325 (817)
Q Consensus 311 ~~~~d-----g~i~iw~~~~ 325 (817)
.||.+ ..+.+||..+
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp ECCEETTEEBCCEEEEETTT
T ss_pred EeCCCCCCCCceEEEeeCCC
Confidence 66654 3466777655
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.89 E-value=0.084 Score=52.55 Aligned_cols=126 Identities=11% Similarity=-0.012 Sum_probs=59.8
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeC-C-----CcEEEEECCCCceEEEEEeecCCCCCCCc
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-D-----GYIRSWDAKLGYEIYRITVGLGGLGSGPE 253 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-d-----g~i~vwd~~~g~~~~~~~~~~~~~~~~~~ 253 (817)
..+.+||..+.. ......+......-.++. -+++.++.|+. + ..+.+||..+.+-...-.. ...
T Consensus 117 ~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-------p~~ 186 (315)
T 4asc_A 117 DSVMCYDRLSFK-WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM-------QTA 186 (315)
T ss_dssp CCEEEEETTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC-------SSC
T ss_pred ceEEEECCCCCc-EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC-------CCc
Confidence 458888887543 222222222111111222 35677777776 2 4689999887643321111 111
Q ss_pred eeEEEeEEecCCeEEEEcCCC-----cEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccC
Q 003467 254 LCIWSLLSLRCGTLVSADSTG-----SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 254 ~~v~~v~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~d 315 (817)
..-.+++...+..++.|+.++ .+.+||..+.+-...-..........+..-+++.++.||.+
T Consensus 187 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 187 RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred hhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCcc
Confidence 111122233333566666544 48889998765443322111111111222256666777663
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.86 E-value=0.47 Score=47.85 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=40.0
Q ss_pred eEEEeEEec-------CC-eEEEEcCCCcEEEEeCCCCeEEEE--e-ecCccCeeEEEEecCCCEEEEEc-cCCcEEEEE
Q 003467 255 CIWSLLSLR-------CG-TLVSADSTGSVQFWDSRHGTLLQA--H-SFHKGDVNALAAAPSHNRVFSTG-SDGQVILYK 322 (817)
Q Consensus 255 ~v~~v~~~~-------~~-~l~s~~~dg~i~iwd~~~~~~~~~--~-~~h~~~v~~l~~s~~~~~l~~~~-~dg~i~iw~ 322 (817)
....+.|.. +| .+++.-..+.|...++..++.+.. + ......+..+++.|||..+++.. .+| +||.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~r 349 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLK 349 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEE
Confidence 456677763 35 455555667787777776544322 2 22235788999999998555433 244 4454
Q ss_pred e
Q 003467 323 A 323 (817)
Q Consensus 323 ~ 323 (817)
+
T Consensus 350 i 350 (353)
T 2g8s_A 350 V 350 (353)
T ss_dssp E
T ss_pred E
Confidence 4
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.86 E-value=0.39 Score=48.46 Aligned_cols=57 Identities=18% Similarity=0.358 Sum_probs=39.8
Q ss_pred eEEEeEEecCCe-EEEEcCCCcEEEEeCCCCeEEEEe-------ecCccCeeEEEEecC---CCEEEEE
Q 003467 255 CIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAH-------SFHKGDVNALAAAPS---HNRVFST 312 (817)
Q Consensus 255 ~v~~v~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~s~~---~~~l~~~ 312 (817)
..+.++|.|+|. ++.+...|.|++++.. +.....+ .........++++|+ +..|+++
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 468899999998 8888889999999854 4322111 112345688999996 5566655
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.41 E-value=0.96 Score=45.68 Aligned_cols=247 Identities=9% Similarity=0.106 Sum_probs=151.1
Q ss_pred EEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC-
Q 003467 19 LATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD- 97 (817)
Q Consensus 19 la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~- 97 (817)
.-.+|..+.||.=. ..++.|+|+++.+. .....- ...|.-=.|-.+.. |+-.+ +..|.-|+++.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~k----lks~~~--~e~VvfWkWis~~~-------l~lVT-~taVyHWsi~~~ 135 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSK----MKAHTM--TDDVTFWKWISLNT-------VALVT-DNAVYHWSMEGE 135 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEE----EEEEEC--SSCCCEEEEEETTE-------EEEEC-SSEEEEEESSSS
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhh----hcceec--CCCceEEEecCCCe-------EEEEc-CCeeEEecccCC
Confidence 44578888888754 67899999998652 333332 23566667766554 44444 45799999974
Q ss_pred CeEEEEEeecC----ceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEE
Q 003467 98 LKQKIVLQSID----FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRV 173 (817)
Q Consensus 98 ~~~~~~~~~~~----~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (817)
..+.+.++-|. ..|.....+++.+.++..+-... .+
T Consensus 136 s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~--------------------------------------~~-- 175 (494)
T 1bpo_A 136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------------------------------------QN-- 175 (494)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE--------------------------------------TT--
T ss_pred CCchhheecchhcccceEEEEEECCCCCeEEEEeeccc--------------------------------------CC--
Confidence 45667777653 56777788888765432111000 00
Q ss_pred EEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCC---CEEEEeeCC---CcEEEEECCCC---c-eEEEEEe
Q 003467 174 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG---NMLYSGSSD---GYIRSWDAKLG---Y-EIYRITV 243 (817)
Q Consensus 174 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg---~~l~s~~~d---g~i~vwd~~~g---~-~~~~~~~ 243 (817)
.-.|.+.+|+.+.+.. +.+.+|.+.-..+...-+. ..++.+... +.++|-++... . ...+-..
T Consensus 176 ---~v~G~mQLYS~er~~s----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~v 248 (494)
T 1bpo_A 176 ---RVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 248 (494)
T ss_dssp ---EEEEEEEEEESTTCCE----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEE
T ss_pred ---cccceEEEeecccccc----chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceee
Confidence 1247889999864332 6788887666555443211 233333332 57777777432 1 0101111
Q ss_pred ecCCCCCCCceeEEEeEEecC-CeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 244 GLGGLGSGPELCIWSLLSLRC-GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
+..-+......--.++..++. |.+..-+.-|.|.+||++++.++..-+-....|...+-+.+..=++.....|.|....
T Consensus 249 dv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 249 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp ECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred eeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence 111111122333445555544 4677778889999999999999988877777777777766666677777899988888
Q ss_pred eeccc
Q 003467 323 ASCES 327 (817)
Q Consensus 323 ~~~~~ 327 (817)
++...
T Consensus 329 v~e~~ 333 (494)
T 1bpo_A 329 VEEEN 333 (494)
T ss_dssp ECTTT
T ss_pred Ecccc
Confidence 87665
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.35 E-value=0.34 Score=47.89 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=65.7
Q ss_pred CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC-----CcEEEEECCCCceEEEEEeecCCCCCCCce
Q 003467 180 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAKLGYEIYRITVGLGGLGSGPEL 254 (817)
Q Consensus 180 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~ 254 (817)
..+.+||+.+.. ......+......-.++.+ +++.++.|+.+ ..+.+||..+.+-...-.. . ...
T Consensus 90 ~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p-----~~r 159 (308)
T 1zgk_A 90 SALDCYNPMTNQ-WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--L-----TRR 159 (308)
T ss_dssp CCEEEEETTTTE-EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--S-----SCC
T ss_pred ceEEEECCCCCe-EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--C-----ccc
Confidence 467888887543 2222222221111222222 67777777654 3688899877653322111 1 111
Q ss_pred eEEEeEEecCC-eEEEEcCC-----CcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEEEEccC-----CcEEEE
Q 003467 255 CIWSLLSLRCG-TLVSADST-----GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFSTGSD-----GQVILY 321 (817)
Q Consensus 255 ~v~~v~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~~~~~d-----g~i~iw 321 (817)
.-.+++.. ++ .++.|+.+ ..+.+||..+.+-... +......-.++.+ +++.++.||.+ ..+.+|
T Consensus 160 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 160 IGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp BSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred cceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 11122222 45 55666543 4589999987654322 1111111222222 56666667654 457777
Q ss_pred Eeecc
Q 003467 322 KASCE 326 (817)
Q Consensus 322 ~~~~~ 326 (817)
|+.+.
T Consensus 237 d~~~~ 241 (308)
T 1zgk_A 237 DVETE 241 (308)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 76553
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.34 E-value=0.88 Score=44.97 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CCCEEEEeeCC--------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcC-C-----CcEEEE
Q 003467 214 DGNMLYSGSSD--------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS-T-----GSVQFW 279 (817)
Q Consensus 214 dg~~l~s~~~d--------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~-d-----g~i~iw 279 (817)
+++.++.|+.+ ..+.+||..+++-...-. .. ....-.+++...+..++.|+. + ..+.+|
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 170 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LP-----YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVY 170 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CS-----SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CC-----CcccceeEEEECCEEEEEeCCCCCCcccceEEEE
Confidence 56777777742 468999988765322111 11 111111222233335566655 2 458999
Q ss_pred eCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCC-----cEEEEEeec
Q 003467 280 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-----QVILYKASC 325 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg-----~i~iw~~~~ 325 (817)
|..+.+-...-..........+..-+++.++.||.++ .+.+||..+
T Consensus 171 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 171 DPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred eCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence 9987654332211111111112222667777777654 355666544
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0065 Score=60.23 Aligned_cols=210 Identities=13% Similarity=0.030 Sum_probs=98.8
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEe--ecCCCCCCCceEEEe-eCCCeEEEEECCCCeEEE
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWC--HAGKMGLPGGRLFSS-SIDGSVSEWDLYDLKQKI 102 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s--~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~ 102 (817)
.++.+++.||.|.-.|..+|+..|..... . ..++....-. +.+. ..++.. +.||.|..+|..+|....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~---~-~~p~~~~~~~~~~~~~-----~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE---N-FQPLIEIQEPSRLETY-----ETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG---G-SCCSEECCCSCTTTSS-----EEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC---c-cCCcEEecCCccccCC-----cEEEEEECCCCEEEEEECCCCcEEe
Confidence 46788889999999999999876654322 0 0111111000 0111 113333 589999999999886654
Q ss_pred EEeecCceEE--EEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCC
Q 003467 103 VLQSIDFSIW--QMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG 180 (817)
Q Consensus 103 ~~~~~~~~i~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 180 (817)
.+... ..+. .+... +.-.+ + ....+..+..+.+|+.+|
T Consensus 82 ~~~~~-~lv~~SP~~~~--~~pvv--------------~-----------------------~~~~~~~~g~Vy~Gs~~g 121 (339)
T 2be1_A 82 PLSIR-QLVSTSPLHLK--TNIVV--------------N-----------------------DSGKIVEDEKVYTGSMRT 121 (339)
T ss_dssp EEEHH-HHHTTCSEEEE--CC-----------------------------------------------CCEEEEECEEEE
T ss_pred eeccc-cceeccccccC--CCcee--------------e-----------------------cccccccCCEEEEEecCC
Confidence 44321 0000 00000 00000 0 000001224889999999
Q ss_pred cEEEEEecCCCceeEeeccCCccc-----eEEEEEEc-----cCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCC
Q 003467 181 CVRIYRITDSDELIYHRSLPRVSG-----RVLSVTWS-----ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS 250 (817)
Q Consensus 181 ~i~iwd~~~~~~~~~~~~~~~h~~-----~v~~v~~s-----~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~ 250 (817)
.+...|+.+|+.+..... ....+ ...|.... ..+..|+.+..+..+.+.+ ++|+ +..+........
T Consensus 122 ~l~ald~~tG~~~W~~~~-~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~- 197 (339)
T 2be1_A 122 IMYTINMLNGEIISAFGP-GSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN- 197 (339)
T ss_dssp EEEEEETTTCCEEEEEST-TCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECC-
T ss_pred EEEEEECCCCcEEEEEec-CCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccc-
Confidence 999999998877633221 11111 11111111 1235677777776666666 4453 222211000000
Q ss_pred CCceeE-EEeEEecCCeEEEEcCCCcEEEEeCCCCeEEE
Q 003467 251 GPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ 288 (817)
Q Consensus 251 ~~~~~v-~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (817)
.....+ ..-..+.|+.++.++.||.|.-+|..+|+.+.
T Consensus 198 ~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 198 VLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp TTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred ccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 000000 00001124544556777777777777777665
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.24 E-value=1.1 Score=44.57 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCceEEEEECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEc---CCCCCcEEEEEEeec---CCCCCCCceEEEe--
Q 003467 13 PSPVVALATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVH---GDPKSRISSLVWCHA---GKMGLPGGRLFSS-- 84 (817)
Q Consensus 13 ~~~I~~la~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---g~~~~~V~~l~~s~~---~~~~~~~~~l~s~-- 84 (817)
-..-..|+|.|||+++++-...|.|.+++..+++. .....+. .........|+|+|+ +.+ |+..
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~--~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~------lYv~yt 102 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK--TELGEVPGVSPSGEGGLLGIALSPDYASDHM------VYAYFT 102 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECTTCCCBTTBSEEEEEECTTHHHHCE------EEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE--eeecccCceeecCCCCceeeEeccccccCCE------EEEEEe
Confidence 34567999999999887776589999998766552 1122221 112567899999995 332 4332
Q ss_pred -eCCCeEEEEECCC
Q 003467 85 -SIDGSVSEWDLYD 97 (817)
Q Consensus 85 -~~d~~i~vwd~~~ 97 (817)
..++.|.-|.+..
T Consensus 103 ~~~~~~v~R~~~~~ 116 (347)
T 3das_A 103 SASDNRIVRMLYDE 116 (347)
T ss_dssp CSSSEEEEEEEBCT
T ss_pred cCCCCEEEEEEeCC
Confidence 2455677776654
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.24 E-value=0.32 Score=49.28 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=21.1
Q ss_pred CCCeEEEEecC-CcEEEEecCCCCCCcEEEEEEc
Q 003467 24 DDSQVAAARED-GSLEIWLVSPGTSGWHCQLTVH 56 (817)
Q Consensus 24 dg~~la~~~~d-g~i~iwd~~~~~~~~~~~~~~~ 56 (817)
+++.++.|+.+ ..+.++|+.+....|.....++
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p 52 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFP 52 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCC
Confidence 67777777643 5688889875334566554444
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.22 E-value=0.045 Score=49.57 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=87.6
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCc--------eeEEEEccCCCEEEEEeC
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP--------ITKMFTSSDGQWLAAVNC 613 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------i~~l~~s~dg~~la~~~~ 613 (817)
.+..++|+|+|.+.++ .+|.++-.+..+.... .+-. .... -.++.|.|+|.+.++ .
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~-----------s~t~IG~~Gw~~F~a~~fD~~G~LYav--~ 105 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMG-----------RAKKIGNGGWNQFQFLFFDPNGYLYAV--S 105 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHH-----------HCEEEECSCGGGCSEEEECTTSCEEEE--E
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccc-----------cccEecccccccceEEEECCCCCEEEe--C
Confidence 6779999999997776 6787766665432211 1111 0112 378899999998888 5
Q ss_pred CCcEEEEECCC-cceEE-----EEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchh
Q 003467 614 FGDVYIFNLEI-QRQHW-----FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ 687 (817)
Q Consensus 614 dg~i~vwd~~~-~~~~~-----~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~ 687 (817)
||.|+-++-.+ +...| .+-..--..+..|.|.| ++.+.++. |+.++-....++.-..|....+ .+.
T Consensus 106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~-----~~g 177 (236)
T 1tl2_A 106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARAT-----KIG 177 (236)
T ss_dssp TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCE-----EEE
T ss_pred CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccc-----eec
Confidence 58887776532 11111 11111114789999999 98766665 8876544444444444532211 111
Q ss_pred -cCCCceeEEEECCCCCCCEEEEEcCceEEEEE
Q 003467 688 -EFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 719 (817)
Q Consensus 688 -~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d 719 (817)
..-..-..+.|.|+|. ++......++...
T Consensus 178 ~~g~~~yr~l~f~~~G~---l~~v~~g~~Y~~~ 207 (236)
T 1tl2_A 178 QGGWDTFKFLFFSSVGT---LFGVQGGKFYEDY 207 (236)
T ss_dssp SSSGGGEEEEEECTTSC---EEEEETTEEEEES
T ss_pred cCCcceEEEEEECCCCc---EEEEeCCeEEecC
Confidence 1112345577999765 5555566666663
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.16 E-value=0.5 Score=46.87 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=62.1
Q ss_pred CEEEEEeCC-------CcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCC------CcEEEEECCCCce
Q 003467 171 RRVALACDD-------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYE 237 (817)
Q Consensus 171 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~g~~ 237 (817)
..++.|+.+ ..+.+||..+.. ......+......-.++. .+++.++.|+.+ ..+.+||..+.+-
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAK-WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTE-EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCC-EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 466666643 247778876443 222222221111111222 467777777642 3589999987654
Q ss_pred EEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCC-----CcEEEEeCCCCeEEEE--eecCccCeeEEEEecCCCEEE
Q 003467 238 IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST-----GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVF 310 (817)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~ 310 (817)
...-.. . ....-.+++...+..++.|+.+ ..+.+||..+.+-... +....... +++ .-+++.++
T Consensus 188 ~~~~~~--p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v 258 (318)
T 2woz_A 188 KDLAPM--K-----TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYA 258 (318)
T ss_dssp EEECCC--S-----SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEE
T ss_pred EECCCC--C-----CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEE
Confidence 322111 1 1111112223333355666543 3477899887654322 22111111 222 23566666
Q ss_pred EEccC
Q 003467 311 STGSD 315 (817)
Q Consensus 311 ~~~~d 315 (817)
.||.+
T Consensus 259 ~GG~~ 263 (318)
T 2woz_A 259 IGGFA 263 (318)
T ss_dssp ECCBC
T ss_pred ECCee
Confidence 66654
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.08 E-value=0.86 Score=46.05 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=20.1
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCcceEEEEecC
Q 003467 603 SDGQWLAAVNCFG------DVYIFNLEIQRQHWFISRL 634 (817)
Q Consensus 603 ~dg~~la~~~~dg------~i~vwd~~~~~~~~~~~~~ 634 (817)
.++++++.|+.++ .|.++++++++.....+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 4788888888653 4667788888876555443
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.99 E-value=1.5 Score=43.83 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=104.1
Q ss_pred ceEEEEECC--CCC-eEEEEe---cCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEee---
Q 003467 15 PVVALATSA--DDS-QVAAAR---EDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSS--- 85 (817)
Q Consensus 15 ~I~~la~sp--dg~-~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~--- 85 (817)
.-..|.+.+ +|+ +|.++. .+.+|+||++...........++.+..-.....+++.++|.+ .++..
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f------yvt~~~~f 186 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF------YATNDHYF 186 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE------EEEESCSC
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE------EecCCcEe
Confidence 344455444 454 454442 257899998876544445566777766678999999999975 55533
Q ss_pred --------------CCCeEEEEECCCCeEEEEEeecCceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCcccc
Q 003467 86 --------------IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS 151 (817)
Q Consensus 86 --------------~d~~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (817)
..|.|.-+|. ++...... .-..-+.++|+||++.
T Consensus 187 td~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~-~l~~pNGia~spDg~~----------------------------- 234 (355)
T 3sre_A 187 IDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE-GFDFANGINISPDGKY----------------------------- 234 (355)
T ss_dssp SSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEE-EESSEEEEEECTTSSE-----------------------------
T ss_pred CCcccccchhhccCCccEEEEEEC--CeEEEeec-CCcccCcceECCCCCE-----------------------------
Confidence 1244555554 43332222 2344578999999842
Q ss_pred ccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEcc-CCCEEEEeeCC-CcEEE
Q 003467 152 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSD-GYIRS 229 (817)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~d-g~i~v 229 (817)
+.++-+..+.|+.|++.....+...+.+ ...+..-.+++.+ +|.+.+++..+ +.|..
T Consensus 235 --------------------lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 235 --------------------VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFF 293 (355)
T ss_dssp --------------------EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred --------------------EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEE
Confidence 3444456789999999744444433444 2356778899999 59887766534 45555
Q ss_pred EECC--CCceEEEEE
Q 003467 230 WDAK--LGYEIYRIT 242 (817)
Q Consensus 230 wd~~--~g~~~~~~~ 242 (817)
|+.. .+..+.++.
T Consensus 294 ~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 294 YDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCTTSCCCEEEEEEE
T ss_pred ECCCCCCCCEEEEEE
Confidence 6544 366666666
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.97 E-value=1.6 Score=43.96 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=34.4
Q ss_pred CcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCe-EEEEEe---ecCceEEEEeeecC
Q 003467 61 SRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQ---SIDFSIWQMAVAPS 119 (817)
Q Consensus 61 ~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---~~~~~i~~~~~s~~ 119 (817)
....+|+|.|+|+ |+.+..++.|.++| .+|+ .+..+. ........|+++|+
T Consensus 29 ~~P~~ia~~pdG~-------l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-------YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp SCEEEEEEEETTE-------EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCeEEEEcCCCe-------EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCC
Confidence 5678999999986 55566679999997 4555 222211 11245678999987
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.93 E-value=0.34 Score=50.78 Aligned_cols=111 Identities=6% Similarity=0.049 Sum_probs=64.6
Q ss_pred cceeEEEEecCCCEEEEEecCCcEEEEEccCCcee--eeeccCcccccccCCCCCCceeEEEEccC---CCEEEEEeC--
Q 003467 541 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSD---GQWLAAVNC-- 613 (817)
Q Consensus 541 ~~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~d---g~~la~~~~-- 613 (817)
.....|+|.|||+++++-...+.|++++..+++.. ..+..... ..........|+|+|| +.+|.+...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~-----~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN-----DADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-----CTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc-----ccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 35779999999997776544457888886555432 22221000 0012456789999996 555555442
Q ss_pred -----------CCcEEEEECCCc-------ceEE-EEecCCCCCeEEEEecCCCCCeEEEEec
Q 003467 614 -----------FGDVYIFNLEIQ-------RQHW-FISRLEGASVTAAGFPPQNNNVLIITTS 657 (817)
Q Consensus 614 -----------dg~i~vwd~~~~-------~~~~-~~~~~~~~~i~~l~~sp~d~~~l~~~~~ 657 (817)
...|.-|+++.. +.+. .++.........|+|.| |+.+.++.+.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 235666665432 1111 13322123578999999 9886666553
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.89 E-value=0.38 Score=43.64 Aligned_cols=105 Identities=10% Similarity=-0.102 Sum_probs=62.7
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEECCCCceE------EEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEe
Q 003467 207 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI------YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWD 280 (817)
Q Consensus 207 ~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~------~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd 280 (817)
.++.|.|+|.+.++ .||.|.-++-.+.... ..+- ...-..+..|.|.|+|.|.+.. ++.+.-+.
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg-------~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVG-------SGGWSGFKFLFFHPNGYLYAVH-GQQFYKAL 160 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEE-------CSSGGGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEec-------cCCCCceEEEEECCCceEEEEe-CCcEEecC
Confidence 78999999987777 6699988876331111 1111 0122457899999999887777 88765443
Q ss_pred CCCCe------EEEEee-cCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 281 SRHGT------LLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 281 ~~~~~------~~~~~~-~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
..++. ....+- ..-..-..+.|.+++...++. ++ ++|....
T Consensus 161 ~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 161 PPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp CCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred CCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 33221 111121 222344557788888766655 66 4555433
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.88 E-value=0.6 Score=45.69 Aligned_cols=143 Identities=10% Similarity=0.099 Sum_probs=87.1
Q ss_pred EEEecCCCcEEEEEcCC-------------ceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEe---
Q 003467 496 CSTISNSGMLFAYSDHV-------------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--- 559 (817)
Q Consensus 496 ~~~~s~~g~~la~~~~~-------------~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~--- 559 (817)
+.-++++|.+|.++... .-.||.+... .+... .+. .-....|++++++|+...
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d-g~~~~------~l~----~~~~~~~s~~g~~Iy~~~~~~ 125 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN-GHGST------VLD----PDPCIYASLIGNYIYYLHYDT 125 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT-SCCCE------EEE----CSCEEEEEEETTEEEEEEESS
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC-CCcce------Eee----cCCccEEEEeCCEEEEEeecC
Confidence 34568899998886332 3456666652 22211 111 112347889999999876
Q ss_pred -cCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeC-CCcEEEEECCCcceEEEEecCCCC
Q 003467 560 -HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGA 637 (817)
Q Consensus 560 -~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 637 (817)
.+..|+..++. |.....+.. +.. .+++++|+.|.-.+. ...|++.+++++.....+. +
T Consensus 126 ~~~~~Iy~~~~d-Gs~~~~lt~-----------~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~- 185 (302)
T 3s25_A 126 QTATSLYRIRID-GEEKKKIKN-----------HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C- 185 (302)
T ss_dssp SSCEEEEEEETT-SCCCEEEES-----------SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-
T ss_pred CCCceEEEEECC-CCCeEEEeC-----------CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-
Confidence 24456666665 333444443 222 457889999987765 6789999988876543332 1
Q ss_pred CeEEEEecCCCCCeEEEEecCC--eEEEEEcCCCcc
Q 003467 638 SVTAAGFPPQNNNVLIITTSSN--QVYVFDVEAKQL 671 (817)
Q Consensus 638 ~i~~l~~sp~d~~~l~~~~~d~--~i~vwd~~~~~~ 671 (817)
.. ...++| ++.+|+-...++ .|..-++++...
T Consensus 186 ~~-~~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 186 NC-YKPVVL-DDTNVYYMDVNRDNAIVHVNINNPNP 219 (302)
T ss_dssp CE-EEEEEE-ETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred Cc-cceeee-cCCEEEEEEcCCCcEEEEEECCCCCe
Confidence 22 234668 888888776543 677777777653
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.62 E-value=2 Score=42.65 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=48.5
Q ss_pred CceeEEEeEEecCCeEEEEcC-CCcEEEEeCCCCeE--EEEe----ecCccCeeEEEEecC---CCEEEEE---ccCCcE
Q 003467 252 PELCIWSLLSLRCGTLVSADS-TGSVQFWDSRHGTL--LQAH----SFHKGDVNALAAAPS---HNRVFST---GSDGQV 318 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~-dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~s~~---~~~l~~~---~~dg~i 318 (817)
.-...+.++|.|||.++.+.. .|.|++++...++. +..+ .........|+++|+ +..|++. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344578999999997666666 89999998765553 2222 123456789999995 4456543 234556
Q ss_pred EEEEeec
Q 003467 319 ILYKASC 325 (817)
Q Consensus 319 ~iw~~~~ 325 (817)
.-|.+..
T Consensus 110 ~R~~~~~ 116 (347)
T 3das_A 110 VRMLYDE 116 (347)
T ss_dssp EEEEBCT
T ss_pred EEEEeCC
Confidence 6666554
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.61 E-value=2 Score=42.46 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=51.1
Q ss_pred CCCEEEEeeCC-------CcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC------CCcEEEE
Q 003467 214 DGNMLYSGSSD-------GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS------TGSVQFW 279 (817)
Q Consensus 214 dg~~l~s~~~d-------g~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~------dg~i~iw 279 (817)
+++..+.|+.+ ..+.+||..+.+-...-.. .....-.+++. .++ .++.|+. ...+.+|
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-------p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-------PIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-------SSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-------CCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 56777777754 3578889877654332111 11111112222 355 4555553 2358999
Q ss_pred eCCCCeEEEEeecCccCe-eEEEEecCCCEEEEEccCC-----cEEEEEeec
Q 003467 280 DSRHGTLLQAHSFHKGDV-NALAAAPSHNRVFSTGSDG-----QVILYKASC 325 (817)
Q Consensus 280 d~~~~~~~~~~~~h~~~v-~~l~~s~~~~~l~~~~~dg-----~i~iw~~~~ 325 (817)
|..+.+-...-....... .+++. -+++.++.||.++ .+.+||..+
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 181 NPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred cCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCC
Confidence 998876443321111111 12222 2566666776543 355566544
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.55 E-value=2.8 Score=43.77 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=40.6
Q ss_pred eeEEEeEEecCCeEEEEcCCC-cEEEEeCCCCeEE--EEeec------CccCeeEEEEecC---CCEEEEEc
Q 003467 254 LCIWSLLSLRCGTLVSADSTG-SVQFWDSRHGTLL--QAHSF------HKGDVNALAAAPS---HNRVFSTG 313 (817)
Q Consensus 254 ~~v~~v~~~~~~~l~s~~~dg-~i~iwd~~~~~~~--~~~~~------h~~~v~~l~~s~~---~~~l~~~~ 313 (817)
...+.++|.|+|.|+.+...+ .|.+++..+++.. ..+.. .......|+|+|+ +..|+++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 356899999999877777765 6998887655432 22221 2355678999996 56666554
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.41 E-value=2.6 Score=42.61 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=135.5
Q ss_pred CCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEeecCceEEE
Q 003467 34 DGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQ 113 (817)
Q Consensus 34 dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~i~~ 113 (817)
+..|.|-|+..+... ..+.+... +.-.+|..+. ||--. ..++.++|+++...+..+.-.. .|..
T Consensus 47 ~~~vvIiDl~~~~~~--~rrpi~Ad------sAIMnP~~~i------iALra-g~~lQiFnle~K~klks~~~~e-~Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP--IRRPISAD------SAIMNPASKV------IALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTF 110 (494)
T ss_dssp CCEEEEEETTSTTSC--EEEECCCS------EEEECSSSSC------EEEEE-TTEEEEEETTTTEEEEEEECSS-CCCE
T ss_pred CCeEEEEECCCCCcc--eecccccc------eeeeCCCCcE------EEEec-CCeEEEEchHHhhhhcceecCC-CceE
Confidence 347899999876642 22333332 4457788775 66654 6789999999988887776433 4444
Q ss_pred EeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEEEEeCCCcEEEEEecCCCce
Q 003467 114 MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 193 (817)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 193 (817)
=.|-.+. .|+..+. ..|+-|++.....+
T Consensus 111 WkWis~~---------------------------------------------------~l~lVT~-taVyHWsi~~~s~P 138 (494)
T 1bpo_A 111 WKWISLN---------------------------------------------------TVALVTD-NAVYHWSMEGESQP 138 (494)
T ss_dssp EEEEETT---------------------------------------------------EEEEECS-SEEEEEESSSSCCC
T ss_pred EEecCCC---------------------------------------------------eEEEEcC-CeeEEecccCCCCc
Confidence 4444433 6666665 57999999743333
Q ss_pred eEeeccCCc----cceEEEEEEccCCCEEEEeeC-------CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEe
Q 003467 194 IYHRSLPRV----SGRVLSVTWSADGNMLYSGSS-------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 262 (817)
Q Consensus 194 ~~~~~~~~h----~~~v~~v~~s~dg~~l~s~~~-------dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~ 262 (817)
. +.+..| ...|..-.-+++.++++..+- .|.+.+|+.+.+. .+.+. +|......+...
T Consensus 139 ~--kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie--------Ghaa~F~~~~~~ 207 (494)
T 1bpo_A 139 V--KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE--------GHAASFAQFKME 207 (494)
T ss_dssp E--EEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC--------CSEEEEEEEECT
T ss_pred h--hheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe--------eeeeeeEEEecC
Confidence 2 444444 357888888999998875442 4788899986543 33333 555555444333
Q ss_pred cCC---e-EEEEcC---CCcEEEEeCCCC---e------EEEEee---cCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 263 RCG---T-LVSADS---TGSVQFWDSRHG---T------LLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 263 ~~~---~-l~s~~~---dg~i~iwd~~~~---~------~~~~~~---~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
.+. . ++.+.. .+.+.|-++... . .+..+- ...+-..++..++.-..++.-+.-|.|.+||+
T Consensus 208 g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDl 287 (494)
T 1bpo_A 208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 287 (494)
T ss_dssp TCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEec
Confidence 221 2 222222 267888888532 1 111111 11334567888988889999999999999999
Q ss_pred eccc
Q 003467 324 SCES 327 (817)
Q Consensus 324 ~~~~ 327 (817)
.++.
T Consensus 288 eTgt 291 (494)
T 1bpo_A 288 ETGT 291 (494)
T ss_dssp TTCC
T ss_pred ccce
Confidence 9998
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.73 E-value=3.1 Score=49.10 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEe
Q 003467 224 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA 303 (817)
Q Consensus 224 dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 303 (817)
..+|.|-|+.++..+.+-.. ..-+.-.+|...+++--...+++|+|+++.+.+..+... .+|..=.|-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-----------~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWi 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-----------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI 114 (1630)
T ss_pred CceEEEEECCCCCCcccccc-----------cchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEec
Confidence 34788888887665533221 112333456666655556788999999988888777653 466666776
Q ss_pred cCCCEEEEEccCCcEEEEEeec
Q 003467 304 PSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 304 ~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
.+.. |+..+ +..|.-|++.+
T Consensus 115 s~~~-l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 115 SLNT-VALVT-DNAVYHWSMEG 134 (1630)
T ss_pred CCCe-eEEEc-CCeEEEeccCC
Confidence 5443 44442 45799999965
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.59 E-value=1 Score=52.86 Aligned_cols=246 Identities=9% Similarity=0.108 Sum_probs=135.6
Q ss_pred EECCCCCeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCC-C
Q 003467 20 ATSADDSQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYD-L 98 (817)
Q Consensus 20 a~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~ 98 (817)
-.+|..+.||.= ...++.|+|+.+... .....- ...|.-=.|-.+.. |+-.+ +..|.-|++.. .
T Consensus 72 IMnP~~~iiALr-ag~~lQiFnl~~k~k----lks~~~--~e~VvfWkWis~~~-------l~lVT-~~aVyHW~~~~~s 136 (1630)
T 1xi4_A 72 IMNPASKVIALK-AGKTLQIFNIEMKSK----MKAHTM--TDDVTFWKWISLNT-------VALVT-DNAVYHWSMEGES 136 (1630)
T ss_pred ccCCCcceEEEe-cCCeEEEeehHHhhh----hccccc--CCCceEEEecCCCe-------eEEEc-CCeEEEeccCCCC
Confidence 356777877774 467899999987653 222221 23565556655543 44443 35799999964 3
Q ss_pred eEEEEEeec----CceEEEEeeecCCCccceeeccCccccCccccCCCCCCCCccccccCCCCCCccccccccccCCEEE
Q 003467 99 KQKIVLQSI----DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVA 174 (817)
Q Consensus 99 ~~~~~~~~~----~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (817)
.+.+.++-| +..|.....+++...++..+-...
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~------------------------------------------- 173 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ------------------------------------------- 173 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC-------------------------------------------
Confidence 455455544 466777777777765432111000
Q ss_pred EEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEc--cCC-CEEEEeeC---CCcEEEEECCCC---ce-EEEEEee
Q 003467 175 LACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS--ADG-NMLYSGSS---DGYIRSWDAKLG---YE-IYRITVG 244 (817)
Q Consensus 175 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--~dg-~~l~s~~~---dg~i~vwd~~~g---~~-~~~~~~~ 244 (817)
.+.-.|.+.+|+.+.+.. +.+.||.+....+... +.. ..++.+.. .+.++|-++... .. ..+-...
T Consensus 174 ~~~v~G~mQLyS~er~~s----Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 174 QNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred CCcccceeeeeecccccc----hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 012458899999864332 6677776654444332 111 22222222 257777776432 11 0000000
Q ss_pred cCCCCCCCceeEEEeEEecC-CeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEe
Q 003467 245 LGGLGSGPELCIWSLLSLRC-GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 323 (817)
Q Consensus 245 ~~~~~~~~~~~v~~v~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~ 323 (817)
..-+......-..++..++. |.+...+.-|.|.++|+.||+++..-+-....|...+.+....-++.....|.|....+
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence 00000011222234444443 46667788899999999999998766655566665555544344555557787777777
Q ss_pred eccc
Q 003467 324 SCES 327 (817)
Q Consensus 324 ~~~~ 327 (817)
+...
T Consensus 330 ~~~~ 333 (1630)
T 1xi4_A 330 EEEN 333 (1630)
T ss_pred ccch
Confidence 6654
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.85 E-value=5.2 Score=38.95 Aligned_cols=100 Identities=7% Similarity=0.024 Sum_probs=56.4
Q ss_pred EEEccCCCEEEEeeC-CCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCC--CcEEEEeCCCC
Q 003467 209 VTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST--GSVQFWDSRHG 284 (817)
Q Consensus 209 v~~s~dg~~l~s~~~-dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~d--g~i~iwd~~~~ 284 (817)
.+|+++++.|+-.+. ...|.+-++..+. ..++. .... . ..+.|++ .|+-.... ..|..-++. |
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~--------~~~~--~-~~~~P~g~~iy~t~~~~~~~I~~~~ld-G 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFY--------DCNC--Y-KPVVLDDTNVYYMDVNRDNAIVHVNIN-N 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEE--------CSCE--E-EEEEEETTEEEEEEGGGTTEEEEECSS-S
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEe--------CCCc--c-ceeeecCCEEEEEEcCCCcEEEEEECC-C
Confidence 467889999887665 5788888876544 33443 1111 1 2345766 55544433 346666665 3
Q ss_pred eEEEEeecCccCeeEEEEecCCCEEEEEcc--CCcEEEEEeec
Q 003467 285 TLLQAHSFHKGDVNALAAAPSHNRVFSTGS--DGQVILYKASC 325 (817)
Q Consensus 285 ~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~--dg~i~iw~~~~ 325 (817)
.....+.. ..+ ..|+|++++|+.+.. .+.|..-++..
T Consensus 217 ~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 217 PNPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp CCCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CCeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 33444542 233 458888998886533 34455555544
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.12 E-value=3.6 Score=45.77 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=59.1
Q ss_pred cCCEEEEEeCCC--cEEEEEecCCCceeEeec---cCCccceEEEEEEccC-CCEEEEeeC--C-----CcEEEEECCCC
Q 003467 169 EDRRVALACDDG--CVRIYRITDSDELIYHRS---LPRVSGRVLSVTWSAD-GNMLYSGSS--D-----GYIRSWDAKLG 235 (817)
Q Consensus 169 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~s~d-g~~l~s~~~--d-----g~i~vwd~~~g 235 (817)
++..++.|+.++ .+.+||..+... ..... +......-.++.+..+ ++.++.|+. + ..+.+||+.+.
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 335777777554 688999875432 22111 1111112233555555 667777765 2 35889999887
Q ss_pred ce-----EEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcC--------CCcEEEEeCCCCeEE
Q 003467 236 YE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--------TGSVQFWDSRHGTLL 287 (817)
Q Consensus 236 ~~-----~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~--------dg~i~iwd~~~~~~~ 287 (817)
.. -..+..... ....-.++....++ .++.|+. ...+.+||..+.+-.
T Consensus 579 ~w~~~~~W~~~~~~p~-----~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 579 NATEPITVIKKLQHPL-----FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCEEEEEEEECGG-----GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccccceEEEEcCCCCC-----CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 72 222221000 00111122334435 5566653 345999999987654
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.2 Score=49.61 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCceeEeeccCCc-cceEEEEE---EccCCCEEEEe-eCCCcEEEEECCCCceEEEEEeec
Q 003467 171 RRVALACDDGCVRIYRITDSDELIYHRSLPRV-SGRVLSVT---WSADGNMLYSG-SSDGYIRSWDAKLGYEIYRITVGL 245 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~---~s~dg~~l~s~-~~dg~i~vwd~~~g~~~~~~~~~~ 245 (817)
.++++++.||.|+-+|..+++..- .+... ..++.... ...++..++.. +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W---~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW---SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE---EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 489999999999999998777653 22221 11222111 00133334343 589999999999986665555321
Q ss_pred CCCCCCCceeEEE---eEE------ecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 246 GGLGSGPELCIWS---LLS------LRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 246 ~~~~~~~~~~v~~---v~~------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
.. ...++.. ... +.++.+++|+.+|.+.-.|..+|+.+..+..
T Consensus 88 lv----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 00 1111110 001 2466899999999999999999999999864
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.84 E-value=12 Score=38.00 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=82.8
Q ss_pred cceeEEEEec-CCCEEEEEecCC----cEEEEEccCCceeeeeccCcccccccCC---CCCCceeEEEEcc-C-CCEEEE
Q 003467 541 QFAHSMIFSY-DSSQLIIAGHDR----RIYVVDVSSSELLHTFTPCREEHDREIQ---PSEPPITKMFTSS-D-GQWLAA 610 (817)
Q Consensus 541 ~~i~~~~fsp-d~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~s~-d-g~~la~ 610 (817)
..+.+|++.| +...|.+++..| .|...+ +.++.-..+............ .....|.+++++| + ...|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 3689999998 344454555554 344332 333322222110000000000 0123588899987 2 445555
Q ss_pred EeCCCcEEEEECCCcceEEEEec------------------CCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccc
Q 003467 611 VNCFGDVYIFNLEIQRQHWFISR------------------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 672 (817)
Q Consensus 611 ~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~ 672 (817)
+...+.|...+ +.++....+.. .....+.+|.+.|.+...|.+++.++.|+..+ +.++
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-- 209 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-- 209 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS--
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC--
Confidence 55555444432 22222112211 11235789999884455677776666554432 2232
Q ss_pred cchhcccC----ccCcchhcCCCceeEEEECCCCCCCEEEEEcCceEEEEE
Q 003467 673 EWSMQHTF----VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID 719 (817)
Q Consensus 673 ~ws~~~~~----~~~~~~~~~~~~v~~l~f~p~~~~~~~~~~~~~~~~~~d 719 (817)
.|...... .++..-......+..|.++|. ++..+++.....+++.+
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~-~~~~l~vg~~~gl~~s~ 259 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPA-APDILYQQNHCGIYRMD 259 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSS-STTEEEEEETTEEEEEE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCC-CCCEEEEEcCCeEEEeC
Confidence 35433210 011100011135889999986 45678777777777654
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.66 E-value=8 Score=37.17 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=73.2
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCC-CceEEEEEeecCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGS 250 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-g~~~~~~~~~~~~~~~ 250 (817)
.++. . ||.|+.|-.....++-.-.. -...|..++...+ +.+... ||.|..|-... |+.- .. .
T Consensus 75 s~~l-~-~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg--~~-------~ 137 (282)
T 3qhy_B 75 SLAL-K-DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT--VP-------A 137 (282)
T ss_dssp EEEE-E-TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS--CC-------G
T ss_pred EEEE-E-CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC--CC-------c
Confidence 4454 4 89999998764444321111 1346888877644 344444 89999997543 3221 00 0
Q ss_pred CCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 251 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
.....|..++.-.+..++.. +|.|..|-......+.....-...|..++...+. .++- .||.|..|-....
T Consensus 138 ~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp GGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTT
T ss_pred cCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCC
Confidence 12344666665544444433 6889998665422111111123467777765443 3333 6999999976554
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.32 E-value=15 Score=40.81 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=79.6
Q ss_pred ccCCEEEEEeCC----CcEEEEEecCCCceeEeec-----cCCccceEEEEEEccCCCEEEEeeCC------CcEEEEEC
Q 003467 168 VEDRRVALACDD----GCVRIYRITDSDELIYHRS-----LPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDA 232 (817)
Q Consensus 168 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~-----~~~h~~~v~~v~~s~dg~~l~s~~~d------g~i~vwd~ 232 (817)
.++..++.|+.+ ..+.+||..++........ +......-.++.+..+++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 4688899876543322101 11111112233332277788888754 35788998
Q ss_pred CCCceEEEEEeecCCCCCCCceeEEEeEEecCC-eEEEEcCCC--cEEEEeCCCCeEEEEee-----cCccCeeEEEEec
Q 003467 233 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG--SVQFWDSRHGTLLQAHS-----FHKGDVNALAAAP 304 (817)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~s~ 304 (817)
.+.+-...-.. .....-.+++...++ .++.|+.++ .+.+||..+.+-...-. .....-.++.+..
T Consensus 476 ~t~~W~~~~~~-------p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTREWSMIKSL-------SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTEEEECCCC-------SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred CCCcEEECCCC-------CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 77543322110 111111223332355 566666544 69999998876433221 1122233455565
Q ss_pred C-CCEEEEEcc--C-----CcEEEEEeeccc
Q 003467 305 S-HNRVFSTGS--D-----GQVILYKASCES 327 (817)
Q Consensus 305 ~-~~~l~~~~~--d-----g~i~iw~~~~~~ 327 (817)
+ ++.++.||. + ..+.+||+.+..
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 5 556666665 2 357788877654
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.59 E-value=16 Score=37.09 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=30.7
Q ss_pred CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCCCCCCceEEEeeCCC
Q 003467 26 SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKMGLPGGRLFSSSIDG 88 (817)
Q Consensus 26 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~~~~~~~l~s~~~d~ 88 (817)
..|.+|...| +.+.+...+...|....... ....|.+|++.|... .+|..++..+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~--~~~~v~~i~~dp~~~-----~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVF--LGHTIHHIVQDPREP-----ERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEES--TTSEEEEEEECSSST-----TCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccC--CCCceEEEEECCCCC-----CeEEEEecCC
Confidence 4677777777 66665543223465443222 246899999998321 1266665554
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.55 E-value=12 Score=35.96 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred EEEEEeCCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCC
Q 003467 172 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 251 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~ 251 (817)
.++. . ||.|+.|-.....++- .-......|..++...+- .++. . ||.|..|-....-.+.. . ..
T Consensus 36 ~~~l-~-~G~v~~wG~n~~Gqlg---~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~-P-------~~ 99 (282)
T 3qhy_B 36 GLAL-K-GGKVLGWGANLNGQLT---MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV-P-------AE 99 (282)
T ss_dssp EEEE-E-TTEEEEEECCSSSTTS---CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-C-------GG
T ss_pred EEEE-E-CCEEEEEeCCCCCCCC---CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC-C-------cc
Confidence 4444 4 9999999876444432 111123367777765432 2333 4 89999997543222110 0 01
Q ss_pred CceeEEEeEEecCCeEEEEcCCCcEEEEeCCC-CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeecc
Q 003467 252 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 252 ~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~ 326 (817)
....|..++...+..++.. +|.|..|-... +++ .........|..++...+. .+.-. ||.|..|-....
T Consensus 100 ~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gql-g~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 100 ARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQT-TVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp GSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTT-SCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTT
T ss_pred cCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcC-CCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCC
Confidence 2235777776655544444 89999997654 322 1111223457777665433 23333 799999976653
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.33 E-value=4.6 Score=42.29 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=67.2
Q ss_pred ceeEEEEecCCCEEEEEec-CCcEEEEEccCC------ce---eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 542 FAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSS------EL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~-dg~i~v~d~~~~------~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
....+.++|||+++++++. +.++.|+|++.. +. ...+... ..-.-.....+|.++|.-..+-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--------~e~GlGPlHt~Fd~~G~aYTtl 395 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--------PELGLGPLHTTFDGRGNAYTTL 395 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--------CBCCSCEEEEEECSSSEEEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--------ccCCCcccEEEECCCCceEeee
Confidence 4567889999999998876 779999998632 11 0111110 0135567889999999655666
Q ss_pred eCCCcEEEEECCCc----------ceEEEEecCCCCCeEEEEe------cCCCCCeEEEEe
Q 003467 612 NCFGDVYIFNLEIQ----------RQHWFISRLEGASVTAAGF------PPQNNNVLIITT 656 (817)
Q Consensus 612 ~~dg~i~vwd~~~~----------~~~~~~~~~~~~~i~~l~~------sp~d~~~l~~~~ 656 (817)
..|..|.-||++.. .....+...- .+-.+.- .| ||++|++..
T Consensus 396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y--qpGH~~~~~get~~~-dGk~lv~ln 453 (638)
T 3sbq_A 396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY--QPGHLHASLCETNEA-DGKWLVALS 453 (638)
T ss_dssp TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS--CEEEEEETTTTSTTC-CSCEEEEEE
T ss_pred eecceEEEEeccHHHHHhcCccCCeeeecccccc--CCcccccCCCccCCC-CccEEEEec
Confidence 78999999999753 2333333221 2333322 46 888888874
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.91 E-value=11 Score=39.12 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=62.1
Q ss_pred cceeEEEEecCCC-EEEEEecCCcEEEEEccCCc---eeeeeccCcccccccCCCCCCceeEEEEccC----CCEEEEEe
Q 003467 541 QFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSE---LLHTFTPCREEHDREIQPSEPPITKMFTSSD----GQWLAAVN 612 (817)
Q Consensus 541 ~~i~~~~fspd~~-~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d----g~~la~~~ 612 (817)
.....|+|.|||+ +|+++...|.|++++..... .+..+... ...............|+|+|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~--~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL--VQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT--BCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce--eccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3678999999996 56667788999999753221 11111110 000000012456789999997 43333322
Q ss_pred C--C----------CcEEEEECCC----------cceEEEEe-cCCCCCeEEEEecCCCCCeEEEEec
Q 003467 613 C--F----------GDVYIFNLEI----------QRQHWFIS-RLEGASVTAAGFPPQNNNVLIITTS 657 (817)
Q Consensus 613 ~--d----------g~i~vwd~~~----------~~~~~~~~-~~~~~~i~~l~~sp~d~~~l~~~~~ 657 (817)
. + ..|.-|.+.. .+.+..++ ......-..|+|.| |+.+.++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd 158 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGD 158 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECC
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCC
Confidence 1 1 1454566542 12223333 11123568899999 9977666654
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.70 E-value=28 Score=34.07 Aligned_cols=176 Identities=9% Similarity=-0.009 Sum_probs=94.8
Q ss_pred ecCCCCeEEEEecC---CCc-EEEEEcCCceEEEEeecCCCCCceEEEeeecCCccccceeEEEEecCCCEEEEEecCCc
Q 003467 488 SKASRKIICSTISN---SGM-LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR 563 (817)
Q Consensus 488 ~~~~~~i~~~~~s~---~g~-~la~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd~~~l~~~~~dg~ 563 (817)
......|..+..-+ +.. ++.++..|.++...+..-...... -+....+.. ...+..+........|+..+..|.
T Consensus 91 l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~-G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~ 168 (327)
T 3uc1_A 91 FQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSG-GIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ 168 (327)
T ss_dssp CCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSS-CEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE
T ss_pred CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccC-ceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe
Confidence 34445666553332 344 455577888888776541111100 011122333 234555555556678888899999
Q ss_pred EEEEEcc--CCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce-------EEEEecC
Q 003467 564 IYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ-------HWFISRL 634 (817)
Q Consensus 564 i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~-------~~~~~~~ 634 (817)
+..+... .-..... .......-.+. ....|.++..-+++.+|+.++..|.++.-.++.... ...+...
T Consensus 169 ~~rf~~~~~eip~~gr--~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~ 245 (327)
T 3uc1_A 169 SIRFSATDEALRPMGR--ATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 245 (327)
T ss_dssp EEEEECCTTTSCCCCT--TSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC
T ss_pred EEEEECcccccCcCCc--CCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec
Confidence 9888876 2211100 00000000111 245677777666777999999999999888754321 1112111
Q ss_pred C-CCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 635 E-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 635 ~-~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
. ...+..+.... +...++..+.+|.+.-++++.-
T Consensus 246 ~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 246 RRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp TTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGGS
T ss_pred CCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhhc
Confidence 1 23455544444 4556777788888877877543
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.36 E-value=65 Score=35.61 Aligned_cols=229 Identities=7% Similarity=0.032 Sum_probs=0.0
Q ss_pred eEEEE-ECCCCCeEEEE-----ecCCcEEEEecCCCCCCcEEEEEEcCCCCCcE----------EEEEEeecCCCCCCCc
Q 003467 16 VVALA-TSADDSQVAAA-----REDGSLEIWLVSPGTSGWHCQLTVHGDPKSRI----------SSLVWCHAGKMGLPGG 79 (817)
Q Consensus 16 I~~la-~spdg~~la~~-----~~dg~i~iwd~~~~~~~~~~~~~~~g~~~~~V----------~~l~~s~~~~~~~~~~ 79 (817)
...+. ++||++++|.+ +.-..|+++|+.+++ .+.++....+ ..++|..++.+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~-------~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~----- 198 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKD-------FVKNGFEPITNSGKLLEGKFTYPTWINKDTI----- 198 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTE-------ECTTCSCCBCTTCCBCCEETCCEEEEETTEE-----
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCC-------cCCCCcccccccccccccccceeeEECCCEE-----
Q ss_pred eEEEe----------eCCCeEEEEECCCC---eEEEEEeecCceEEEEeeecCCCc---cceeeccCccccCccccCCCC
Q 003467 80 RLFSS----------SIDGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAPSNSS---LMHAVTNSDHIGNGYLNDKSN 143 (817)
Q Consensus 80 ~l~s~----------~~d~~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~ 143 (817)
+++. +....|+.|.+.+. ..+.--.....--.....++++.+ .
T Consensus 199 -~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 257 (711)
T 4hvt_A 199 -IFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSL-------------------- 257 (711)
T ss_dssp -EECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSE--------------------
T ss_pred -EEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEE--------------------
Q ss_pred CCCCccccccCCCCCCccccccccccCCEEEEEe---CCCcEEEEEecCCCceeEeeccCCccceEEEEEEccCCCEEEE
Q 003467 144 DSDDHETSESENDSDSDELHEQSVVEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYS 220 (817)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s 220 (817)
.+++.+ ....+++.+............+..... +..+.++.+++.
T Consensus 258 ----------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~ 305 (711)
T 4hvt_A 258 ----------------------------IFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT----LQGSFKEYVFWL 305 (711)
T ss_dssp ----------------------------EEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE----EEEEETTEEEEE
T ss_pred ----------------------------EEEEEecccCceeEEEEcCCCCCCcceEeecCCcce----EeeeECCEEEEE
Q ss_pred eeC----------CCcEEEEECCC-------CceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCc--EEEEeC
Q 003467 221 GSS----------DGYIRSWDAKL-------GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS--VQFWDS 281 (817)
Q Consensus 221 ~~~----------dg~i~vwd~~~-------g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~--i~iwd~ 281 (817)
... .+.|.+.++.+ ......+-.+ .....+..+.+..+..+++...++. |.++|+
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~ 379 (711)
T 4hvt_A 306 LRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP------TANEVFNFISTTKDRVFLATYDNVVAKVVTFTL 379 (711)
T ss_dssp CSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC------CTTEEEEEEEECSSCEEEEEEETTEEEEEEECE
T ss_pred ECcccccccccCCCCeEEEEECCcccccccccccceEEECC------CCCCeEEEEEEECCEEEEEEEECCEEEEEEEEC
Q ss_pred CCCe-EEEE-eecC-ccCeeEEEEecCCCEEEEEccC
Q 003467 282 RHGT-LLQA-HSFH-KGDVNALAAAPSHNRVFSTGSD 315 (817)
Q Consensus 282 ~~~~-~~~~-~~~h-~~~v~~l~~s~~~~~l~~~~~d 315 (817)
.+++ .... +... .+.+.....++++..++.....
T Consensus 380 ~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 380 ENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp ETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred CCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.77 E-value=4.3 Score=42.48 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=53.5
Q ss_pred CCceeEEEEccCCCEEEEEe-CCCcEEEEECCCcce-------------EEEEecCCCCCeEEEEecCCCCCeEEEEecC
Q 003467 593 EPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ-------------HWFISRLEGASVTAAGFPPQNNNVLIITTSS 658 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~-~dg~i~vwd~~~~~~-------------~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d 658 (817)
......+.++|||+++++++ .+.++.|+|++.... ....+ -+..+...+|.+ +|.-..+..-|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~-~G~aYTtlfid 398 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDG-RGNAYTTLFID 398 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECS-SSEEEEEETTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECC-CCceEeeeeec
Confidence 34456688999999988776 577899999974211 11222 345788999999 88555555689
Q ss_pred CeEEEEEcCCC
Q 003467 659 NQVYVFDVEAK 669 (817)
Q Consensus 659 ~~i~vwd~~~~ 669 (817)
.+|.-|+++..
T Consensus 399 SqvvkWni~~a 409 (638)
T 3sbq_A 399 SQVVKWNMEEA 409 (638)
T ss_dssp TEEEEEEHHHH
T ss_pred ceEEEEeccHH
Confidence 99999999653
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=80.89 E-value=42 Score=32.48 Aligned_cols=258 Identities=8% Similarity=0.019 Sum_probs=119.2
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCc--ccCCCCCCCceeeecceee-cCCeEEEEEeCCeEEEEEecccCCcccCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPH--EICPAPQRVPIHLVHNTIF-SHTSLLLVQYSCRLDILSVRLENNVESRSSSG 475 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 475 (817)
+++++.+.+|.|+--++.++...... .............+..... ..+..++++..+.+ +.+...+-........
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~--~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV--YSMKVYQLPEATRGAR 81 (307)
T ss_dssp EEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEE--EEEEGGGSCCCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEE--EEEEhhHCcCCCCCCC
Confidence 48899999999998888765433211 0000011111112222222 23344444544433 3333222111001111
Q ss_pred CCCccceeeeeeecCCCCeEEEEec---CCCc-EEEEEcCCceEEEEeecCCCCC-ceEEEeeecCCccccceeEEEEec
Q 003467 476 GHASTSLLVQVKSKASRKIICSTIS---NSGM-LFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSY 550 (817)
Q Consensus 476 g~~~~~~~~~~~~~~~~~i~~~~~s---~~g~-~la~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~fsp 550 (817)
|. ....-+.......|.++..- .++. ++.++..|.++.-.+..-.... .- +....+... ..+..+....
T Consensus 82 G~---~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G--~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 82 GR---PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAG--KVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp CE---EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTC--EESSCCCTT-CCEEEEEEEC
T ss_pred Ce---EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCC--eEEEEECCC-CEEEEEEEeC
Confidence 11 11112233444566655432 2344 5666788988887765311110 00 111223333 3455555555
Q ss_pred CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce---
Q 003467 551 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ--- 627 (817)
Q Consensus 551 d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~--- 627 (817)
+...++..+.+|.+..++...-..... .......-.+. ....|.++..-.++..|++.+..|.++-.+++....
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr--~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGC--NTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCT--TCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCC--CCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 566788888999988888753211100 00000000011 245566776556667899999999999888743221
Q ss_pred ----EEEEecC-CCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 628 ----HWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 628 ----~~~~~~~-~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
...+... ..+.+..+.... +...|+..+.+|.+.-++++.
T Consensus 233 g~kG~~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 1111111 113454444434 445566777777776666654
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.82 E-value=12 Score=43.36 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.+.+++..++..++++.|.|+++|+|++.+|+++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 578888888999999999999999999999999988764
No 358
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=77.25 E-value=62 Score=32.29 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=82.6
Q ss_pred cCCEEEEEeCCCcEEEEEecCC-----CceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 169 EDRRVALACDDGCVRIYRITDS-----DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 169 ~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
++.+|+.++..|.++...+..- ..+.. ..+.. .+.+..+....+...|+..+.+|.+..++...-....+-..
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~a-i~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~ 189 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIA-INLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT 189 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEES-SCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEE-EEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCC
Confidence 4568999999999999887521 11111 12332 34566666555667788888889888887643211111000
Q ss_pred ecCCCCCCCceeEEEeEEec-----------------------------------C-CeEEEEcCCCcEEEEeCCCCeE-
Q 003467 244 GLGGLGSGPELCIWSLLSLR-----------------------------------C-GTLVSADSTGSVQFWDSRHGTL- 286 (817)
Q Consensus 244 ~~~~~~~~~~~~v~~v~~~~-----------------------------------~-~~l~s~~~dg~i~iwd~~~~~~- 286 (817)
+...........|.++...+ + ..+++.+..|..+...+.....
T Consensus 190 GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~ 269 (370)
T 3l6v_A 190 GVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRK 269 (370)
T ss_dssp CEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCB
T ss_pred CeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhccc
Confidence 00000112233444444333 2 3688888888888876643111
Q ss_pred ------EE--EeecCccCeeEEEEecCCCEEEEEccCCcEEEEEeec
Q 003467 287 ------LQ--AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 325 (817)
Q Consensus 287 ------~~--~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~ 325 (817)
+. .+....+.+..+.+..+...++..+..|.+.-.....
T Consensus 270 ~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 270 GRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred ccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 12 2222234444443334445566666677766665544
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=73.38 E-value=69 Score=30.98 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=84.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCce----eEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 171 RRVALACDDGCVRIYRITDSDEL----IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
..++..+..|.++-..+..-... .....+..+ +.+..+....+...|+..+.+|.+..++...-....+...+..
T Consensus 110 ~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~ 188 (307)
T 1zi0_A 110 VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 188 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred cEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeE
Confidence 47999999999999887521111 011223333 5666666655666788888899988887643211111000000
Q ss_pred CCCCCCceeEEEeEEecCC-eEEEEcCCCcEEEEeCCCC---------eEEEEeecCccCeeEEEEecCCCEEEEEccCC
Q 003467 247 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG---------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 316 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg 316 (817)
.........|.++...+++ .++..+..|.++-.++... .....+....+.+..+....+...++..+.+|
T Consensus 189 ~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 189 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 0111233445555544443 6888889999888776321 11222222234554444433445566666777
Q ss_pred cEEEEEeec
Q 003467 317 QVILYKASC 325 (817)
Q Consensus 317 ~i~iw~~~~ 325 (817)
.+.-+....
T Consensus 269 ~~ir~~~~~ 277 (307)
T 1zi0_A 269 TLVRTRVSE 277 (307)
T ss_dssp CEEEEEGGG
T ss_pred cEEEEeccc
Confidence 776666554
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.95 E-value=97 Score=32.08 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=33.6
Q ss_pred CceeEEEEcc-------CCCEEEEEeCCCcEEEEECCCcceE---EEEe-c-------CCCCCeEEEEecCCCCCeEEEE
Q 003467 594 PPITKMFTSS-------DGQWLAAVNCFGDVYIFNLEIQRQH---WFIS-R-------LEGASVTAAGFPPQNNNVLIIT 655 (817)
Q Consensus 594 ~~i~~l~~s~-------dg~~la~~~~dg~i~vwd~~~~~~~---~~~~-~-------~~~~~i~~l~~sp~d~~~l~~~ 655 (817)
..++.+.|-. .|++ ++++..+.|....++..... ..+. . .....+..+.+.| |+.++++.
T Consensus 276 ~Ap~G~~~Y~G~~fP~~~g~~-f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~p-dG~Lyv~~ 353 (463)
T 2wg3_C 276 GPLVGGFVYRGCQSERLYGSY-VFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDE-LGEVYILS 353 (463)
T ss_dssp -CEEEEEECCCSSCTTTTTCE-EEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECT-TCCEEEEE
T ss_pred ccccceEEEeCCCChhhcceE-EEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECC-CCCEEEEe
Confidence 5677787743 2334 44555577766666543211 1121 0 1125789999999 99877776
Q ss_pred e
Q 003467 656 T 656 (817)
Q Consensus 656 ~ 656 (817)
.
T Consensus 354 ~ 354 (463)
T 2wg3_C 354 S 354 (463)
T ss_dssp E
T ss_pred c
Confidence 5
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.62 E-value=13 Score=39.87 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=46.8
Q ss_pred CceeEEEEccCCCEEEEEeCC------------CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEE
Q 003467 594 PPITKMFTSSDGQWLAAVNCF------------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 655 (817)
Q Consensus 594 ~~i~~l~~s~dg~~la~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~ 655 (817)
...-.|+|+|+|++++.-+.+ ..+.+.+..+++....+....++.++.++|+| |++.|++.
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 345679999999977765543 24667777888877767666678999999999 98888776
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=67.03 E-value=23 Score=37.51 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred CCceeEEEEccCCCEEEEEeCC------------CcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEe
Q 003467 593 EPPITKMFTSSDGQWLAAVNCF------------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 656 (817)
Q Consensus 593 ~~~i~~l~~s~dg~~la~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~ 656 (817)
-.....|+|+++|.+.+..+.. ..|..++..+++....+.......++.++|+| |++.|.++-
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 3457789999999877754431 25777777778876666444446899999999 998888874
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.86 E-value=9 Score=45.49 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=33.7
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.+.+++..++..+|++.|.|+++|+||+.+++++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777889999999999999999999999988764
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.89 E-value=25 Score=37.19 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=44.8
Q ss_pred ccceeEEEEecCCCEEEEEec------------CCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCE
Q 003467 540 LQFAHSMIFSYDSSQLIIAGH------------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW 607 (817)
Q Consensus 540 ~~~i~~~~fspd~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 607 (817)
+.....|.|.++|.+.+.... ...++.++..++++...+... ....++.++||||++.
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P----------~~aEpnGiafSPD~kt 544 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP----------IGCEVTGISFSPDQKT 544 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC----------TTCEEEEEEECTTSSE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC----------CCccccCCEECCCCCE
Confidence 346778999999987774432 115677777778766655431 3567999999999998
Q ss_pred EEEEe
Q 003467 608 LAAVN 612 (817)
Q Consensus 608 la~~~ 612 (817)
|.++-
T Consensus 545 LfV~v 549 (592)
T 4a9v_A 545 LFVGI 549 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87763
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.47 E-value=21 Score=38.23 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=38.1
Q ss_pred EEEEECCCCCeEEEEecC------------CcEEEEecCCCCCCcEEEEEEcCCCCCcEEEEEEeecCCC
Q 003467 17 VALATSADDSQVAAARED------------GSLEIWLVSPGTSGWHCQLTVHGDPKSRISSLVWCHAGKM 74 (817)
Q Consensus 17 ~~la~spdg~~la~~~~d------------g~i~iwd~~~~~~~~~~~~~~~g~~~~~V~~l~~s~~~~~ 74 (817)
--|+|+|+|++++.-..+ ..+.+.+..+++ ..+.+.+.....++.++|+||++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~----~~rf~~~P~gaE~TG~~fspDg~t 544 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE----IRRFMVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC----EEEEEECCTTCEEEEEEECTTSSE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe----EEEEEeCCCCccCcCeeECCCCCE
Confidence 568999999865543211 235555666666 455566677889999999999987
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=60.91 E-value=1.3e+02 Score=29.40 Aligned_cols=150 Identities=10% Similarity=0.001 Sum_probs=83.7
Q ss_pred EEEEEeCCCcEEEEEec---CC----Ccee--EeeccCCccceEEEEEEcc---CCCEEEEeeCCCcEEEEECCCCceEE
Q 003467 172 RVALACDDGCVRIYRIT---DS----DELI--YHRSLPRVSGRVLSVTWSA---DGNMLYSGSSDGYIRSWDAKLGYEIY 239 (817)
Q Consensus 172 ~l~~~~~dg~i~iwd~~---~~----~~~~--~~~~~~~h~~~v~~v~~s~---dg~~l~s~~~dg~i~vwd~~~g~~~~ 239 (817)
.|+.-+..|.++-.... .. .... ....+.. ...|.++..-+ +..+++..+.+|.|+.-.+..-....
T Consensus 55 ~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~ 133 (327)
T 3uc1_A 55 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR 133 (327)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc
Confidence 66666677766655432 11 0000 0011222 33555554333 57899999999999998875432221
Q ss_pred E--EEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCC--C---------CeEEEEeecCccCeeEEEEecCC
Q 003467 240 R--ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR--H---------GTLLQAHSFHKGDVNALAAAPSH 306 (817)
Q Consensus 240 ~--~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~--~---------~~~~~~~~~h~~~v~~l~~s~~~ 306 (817)
+ ... -........+.......+..++..+..|.+..+... . |...-.+. ....|.++...+++
T Consensus 134 r~G~~~---i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~ 209 (327)
T 3uc1_A 134 SGGIVA---VNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREG 209 (327)
T ss_dssp SSCEES---CBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTT
T ss_pred cCceEE---EEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCC
Confidence 1 000 001123334444444444578888888988777665 2 22212222 23456666666666
Q ss_pred CEEEEEccCCcEEEEEeecc
Q 003467 307 NRVFSTGSDGQVILYKASCE 326 (817)
Q Consensus 307 ~~l~~~~~dg~i~iw~~~~~ 326 (817)
.+++..+..|.++.-.+..-
T Consensus 210 ~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 210 TYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHc
Confidence 78899999999888876554
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.85 E-value=56 Score=35.70 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=30.9
Q ss_pred eEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEe
Q 003467 205 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV 243 (817)
Q Consensus 205 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~ 243 (817)
.|.++.+ +..+|++-+.|.++|+||+.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 468999999999999999999999988774
No 368
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=56.68 E-value=2.4e+02 Score=31.29 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred CceEEEEECCCC-CeEEEEecCCcEEEEecCCCCCCcEEEEEEcCC---CCCcEEEEEEeecC
Q 003467 14 SPVVALATSADD-SQVAAAREDGSLEIWLVSPGTSGWHCQLTVHGD---PKSRISSLVWCHAG 72 (817)
Q Consensus 14 ~~I~~la~spdg-~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~g~---~~~~V~~l~~s~~~ 72 (817)
+.|.+|+|+|.. ..|.++...|.|..+ ..+-..|..+....+. ....|.+|++.|..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS--~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRW--DPSTETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEE--ETTTTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEe--CCCCCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 389999999963 445555555655444 3333345432110110 02469999999854
No 369
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=56.13 E-value=1.5e+02 Score=28.78 Aligned_cols=255 Identities=11% Similarity=0.087 Sum_probs=120.8
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCcccCCCCCCCceeeecceee-cCCeEEEEEeCCeEEEEEecccCCcccCCCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF-SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH 477 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~g~ 477 (817)
+++++.+.+|.|+--++..+....... .........+..... ..+..++++..+.+ +.+...+-........|.
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~---~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~--~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQD---FAMKDTDRLLAMLEMNTKDVLLLFTNKGNY--LYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCC---CCCCTTCCEEEEEEEETTSEEEEEETTSEE--EEEEGGGSCBCCTTSCCE
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCccc---cccCCCCEEEEEEEECCCCEEEEEECCCEE--EEEEHHHCcCCCCCCCCc
Confidence 489999999999988876554321111 111111112222222 23444455544433 333222211100011121
Q ss_pred CccceeeeeeecCCCCeEEE-EecC--CCc-EEEEEcCCceEEEEeecCCCCC--ceEEEeeecCCccccceeEEEEecC
Q 003467 478 ASTSLLVQVKSKASRKIICS-TISN--SGM-LFAYSDHVKPSLFELKKGKVGQ--GEWIINKRQLPRKLQFAHSMIFSYD 551 (817)
Q Consensus 478 ~~~~~~~~~~~~~~~~i~~~-~~s~--~g~-~la~~~~~~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~fspd 551 (817)
....-+.......|.++ .+.+ ++. ++.++..|.++...+..-.... .- +....+... ..+..+....+
T Consensus 81 ---~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G--~~ai~l~e~-d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 ---HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKP--LTGINLKND-DQVVDVHLTDG 154 (323)
T ss_dssp ---EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSC--EECSCCCTT-CCEEEEEEECS
T ss_pred ---ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCc--eEEEEeCCC-CEEEEEEEeCC
Confidence 01111234444566654 3332 234 5666788998888775311100 10 111223322 34555555556
Q ss_pred CCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCC-EEEEEeCCCcEEEEECCCc-----
Q 003467 552 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQ----- 625 (817)
Q Consensus 552 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~~dg~i~vwd~~~~----- 625 (817)
...++..+.+|.+..+....-..... ...+...-.+. ....|.++..-+++. .|++.+..|..+..+++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR--~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~R 231 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGV--RAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATR 231 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCS--SCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCT
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCC--CCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCC
Confidence 67788889999999998753211110 00000000111 234566664434455 7888899999888887542
Q ss_pred --ceEEEEecC--CCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 626 --RQHWFISRL--EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 626 --~~~~~~~~~--~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
+-...+... .+..+..+.... +.+.++..+..|.+.-+.++.
T Consensus 232 g~kGv~~~~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 232 AKRGVVILRELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp TSCCEECSCCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CCCCEECeeecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 111112111 112444333333 345566777778776666654
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.99 E-value=2.8e+02 Score=31.87 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=33.5
Q ss_pred ceeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeec
Q 003467 542 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT 579 (817)
Q Consensus 542 ~i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 579 (817)
.+.+++..++..++++.+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56677888899999999999999999999999888764
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.70 E-value=1.5e+02 Score=28.00 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=85.9
Q ss_pred CEEEEEeCCCcEEEEEecCCC----ceeEeeccCCccceEEEEEEccCCCEEEEeeCCCcEEEEECCCCceEEEEEeecC
Q 003467 171 RRVALACDDGCVRIYRITDSD----ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 246 (817)
Q Consensus 171 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~ 246 (817)
..++..+.+|.++-..+..-. ... ...+.. ...+..+....+...|+..+.+|.+..++...-....+-..+..
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~-~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMP-IIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEE-CSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeE-EEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 489999999999999876431 110 012222 34566666665667888889999988887542111100000000
Q ss_pred CCCCCCceeEEEeEEec-CCeEEEEcCCCcEEEEeCCC-------CeEEEEeecCccCeeEEEEecCCCEEEEEccCCcE
Q 003467 247 GLGSGPELCIWSLLSLR-CGTLVSADSTGSVQFWDSRH-------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 318 (817)
Q Consensus 247 ~~~~~~~~~v~~v~~~~-~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l~~~~~dg~i 318 (817)
.........|.++...+ +..++..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeE
Confidence 00012234455544444 44788889999988887643 2223333 223445544443344567777788888
Q ss_pred EE--EEeecc
Q 003467 319 IL--YKASCE 326 (817)
Q Consensus 319 ~i--w~~~~~ 326 (817)
.. ++...-
T Consensus 238 ir~~~~~~~i 247 (276)
T 3no0_A 238 FYDKINQKDI 247 (276)
T ss_dssp EEEEEEGGGS
T ss_pred EEeeeCHHHC
Confidence 77 776543
No 372
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=51.36 E-value=88 Score=24.64 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=44.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccC
Q 003467 604 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP 683 (817)
Q Consensus 604 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~ 683 (817)
+|++.+.-..||.+.+|+...+...|.........-..+.+.. +|++++. ..++.+ +|.-.+...
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~-dGNLVl~-d~~~~~-iW~S~t~~~------------ 87 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGH-SGELDIT-DDRLNT-VFVSNTVGQ------------ 87 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECT-TSCEEEE-CTTSCE-EEECSCCCS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeC-CCcEEEE-CCCCCE-EEECCCcCC------------
Confidence 3556666666777777765434455554332211224566766 7765544 334443 676544210
Q ss_pred cchhcCCCceeEEEECCCCCCCEEEEEc
Q 003467 684 RRYQEFPGEVIGLSFSPSPSSSSVIIYS 711 (817)
Q Consensus 684 ~~~~~~~~~v~~l~f~p~~~~~~~~~~~ 711 (817)
. ....+.+.+||+ +++|+
T Consensus 88 ------~-~~~~~~L~~dGn---lvly~ 105 (113)
T 3mez_B 88 ------E-GDYVLILQINGQ---AVVYG 105 (113)
T ss_dssp ------S-SCCEEEECTTSC---EEEEC
T ss_pred ------C-CCEEEEEcCCce---EEEec
Confidence 0 124567778776 77765
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.79 E-value=1.7e+02 Score=27.68 Aligned_cols=169 Identities=9% Similarity=-0.013 Sum_probs=93.4
Q ss_pred cceeEEEEec-CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEE
Q 003467 541 QFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYI 619 (817)
Q Consensus 541 ~~i~~~~fsp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~v 619 (817)
..|..+.... +..+++.++.+|.++...+.... .+. .+ ...-.+. ....+..+........|+..+..|.+..
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~-~G---~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA-QG---MPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVAR 141 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCS-TT---EECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEE
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhc-CC---eEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEE
Confidence 3455554422 57899999999999999986543 110 01 0000011 2345666666666778999999999988
Q ss_pred EECCCcce-------EEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCc
Q 003467 620 FNLEIQRQ-------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE 692 (817)
Q Consensus 620 wd~~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~ 692 (817)
++...-.. ...+....+..|.++...+ ++..|+.++..|.++...++.-... .+....+. .+ ...+.
T Consensus 142 ~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~---~R~gkGv~-~i-~~~~~ 215 (276)
T 3no0_A 142 FSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKT---NRGVKGTE-VS-GTKDT 215 (276)
T ss_dssp EEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCC---CTTCCCEE-CC-CSSSC
T ss_pred EEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccC---CCCCcceE-EE-cCCCc
Confidence 88643221 1111112235677766666 6678889999999888887654331 11111111 11 23455
Q ss_pred eeEEEECCCCCCCEEEEEcCceEEE--EEcCC
Q 003467 693 VIGLSFSPSPSSSSVIIYSARAMCV--IDFGR 722 (817)
Q Consensus 693 v~~l~f~p~~~~~~~~~~~~~~~~~--~d~~~ 722 (817)
+.++.... ++...+++.....+.+ ++.+.
T Consensus 216 lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 216 LVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 55554332 2233444445555656 66543
No 374
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=50.77 E-value=90 Score=24.58 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=15.2
Q ss_pred EeEEecCCeEEEEcCCCcEEEEeCCC
Q 003467 258 SLLSLRCGTLVSADSTGSVQFWDSRH 283 (817)
Q Consensus 258 ~v~~~~~~~l~s~~~dg~i~iwd~~~ 283 (817)
.+.+..+|.|+.-+.++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEeCCCcEEEECCCCCE-EEECCC
Confidence 4556677766666655554 676553
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.26 E-value=1.4e+02 Score=35.26 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=27.4
Q ss_pred CeeEEEEecCCCEEEEEccCCcEEEEEeeccc
Q 003467 296 DVNALAAAPSHNRVFSTGSDGQVILYKASCES 327 (817)
Q Consensus 296 ~v~~l~~s~~~~~l~~~~~dg~i~iw~~~~~~ 327 (817)
.+.+++..++..++++-+.|+++++|++.+++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 34566677888999999999999999999887
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.14 E-value=2.4e+02 Score=27.33 Aligned_cols=163 Identities=10% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcce----
Q 003467 552 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ---- 627 (817)
Q Consensus 552 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~~---- 627 (817)
+.+|+.++.+|.++...+......+.-.+ ...-.+. ..+.+..+....+...|+..+.+|.+..++.+.-..
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~~~~~r~~G---~~ai~l~-e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~ 181 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKP---LTGINLK-NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR 181 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSC---EECSCCC-TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred CceEEEEeCCCeEEEeEHHHhhhccccCc---eEEEEeC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC
Confidence 67899999999999998853322210000 0000011 124555555555566788889999998888753221
Q ss_pred ---EEEEecCCCCCeEEEEecCCCCC-eEEEEecCCeEEEEEcCCCccccchhcccC-ccCcchhcCCCceeEEEECCCC
Q 003467 628 ---HWFISRLEGASVTAAGFPPQNNN-VLIITTSSNQVYVFDVEAKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSP 702 (817)
Q Consensus 628 ---~~~~~~~~~~~i~~l~~sp~d~~-~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~-~~~~~~~~~~~~v~~l~f~p~~ 702 (817)
...+....+..|.++...+ ++. .|++.+..|..+..+++.-... .|...- ..++.+....+.+.++....+
T Consensus 182 a~GV~~i~L~~~d~Vv~~~~~~-~~~~~ll~vt~~G~gKr~~~~e~~~~--~Rg~kGv~~~~~~~~~~~~l~~~~~v~~- 257 (323)
T 1wp5_A 182 AAGVKGMNLKEGDYIVSGQLIT-SKDESIVVATQRGAVKKMKLTEFEKA--TRAKRGVVILRELKANPHRISGFVVAQD- 257 (323)
T ss_dssp CCCEECCCCCTTCCEEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCCC--CTTSCCEECSCCCSSSCCCEEEEEEECT-
T ss_pred CcCEEEEEeCCCCEEEEEEEEc-CCCcEEEEEECCCceEEEEHHHcccc--CCCCCCEECeeecCCCCceEEEEEEeCC-
Confidence 1112112234666665544 444 6888888888887777553221 111111 122223333335554433222
Q ss_pred CCCEEEEEcCceEEEEEcCC
Q 003467 703 SSSSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 703 ~~~~~~~~~~~~~~~~d~~~ 722 (817)
....+++.....+.++.++.
T Consensus 258 ~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 258 SDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp TCEEEEEETTSCEEEEEGGG
T ss_pred CCeEEEEeCCCeEEEEEhhh
Confidence 23455666666677777654
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=38.58 E-value=3.1e+02 Score=27.30 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCceeEeecc-----------CCc----cceEEEEEEccC----CCEEEEeeCCCcEEEEECC-----
Q 003467 178 DDGCVRIYRITDSDELIYHRSL-----------PRV----SGRVLSVTWSAD----GNMLYSGSSDGYIRSWDAK----- 233 (817)
Q Consensus 178 ~dg~i~iwd~~~~~~~~~~~~~-----------~~h----~~~v~~v~~s~d----g~~l~s~~~dg~i~vwd~~----- 233 (817)
..+-|.|+|+.+++........ .+. ...|..++++|+ ++.|......+ -++|.+.
T Consensus 179 ~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~ 257 (381)
T 3q6k_A 179 LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELK 257 (381)
T ss_dssp TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHS
T ss_pred CCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhh
Confidence 4677888888866655332110 111 236888999998 77777665543 2344332
Q ss_pred CC---ceEEEEEeecCCCCCCCceeEEEeEEe-cCCe-EEEEcCCCcEEEEeCCC
Q 003467 234 LG---YEIYRITVGLGGLGSGPELCIWSLLSL-RCGT-LVSADSTGSVQFWDSRH 283 (817)
Q Consensus 234 ~g---~~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~-l~s~~~dg~i~iwd~~~ 283 (817)
.. ..+..+-. ++....-..+++. .+|. +++--....|..|+..+
T Consensus 258 ~~~~~~~v~~~G~------kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 258 QKGGKLNPELLGN------RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp STTCCCCCEEEEE------CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcchhhceEEeee------cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 11 11222211 0112233445564 5674 55556677899999874
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.24 E-value=47 Score=36.24 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.6
Q ss_pred cEEEEEEeecCCCCCCCceEEEeeCCCeEEEEECCCCeEEEEEee
Q 003467 62 RISSLVWCHAGKMGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS 106 (817)
Q Consensus 62 ~V~~l~~s~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 106 (817)
.|.++.+ +..+ |++-+.|.++++||+.+++++.+.+-
T Consensus 223 ~Is~~~~--~~~f------LftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERY------LIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTE------EEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcE------EEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 4556 99999999999999999999888764
No 379
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.55 E-value=3.3e+02 Score=27.07 Aligned_cols=108 Identities=8% Similarity=0.045 Sum_probs=60.3
Q ss_pred CCeEEEEecCC----CcEEEEEcCCceEEEEeecC---CCC--CceEEEeeecCCccccceeEEEEe-cCCCEEEEEecC
Q 003467 492 RKIICSTISNS----GMLFAYSDHVKPSLFELKKG---KVG--QGEWIINKRQLPRKLQFAHSMIFS-YDSSQLIIAGHD 561 (817)
Q Consensus 492 ~~i~~~~~s~~----g~~la~~~~~~i~l~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~~~~fs-pd~~~l~~~~~d 561 (817)
..+..+++||+ +++|....-..-++|.+.+. +.. ..+-.+. . .+.......+++. .+|..+++--..
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G-~--kg~~s~~~~~~~D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLG-N--RGKYNDAIALAYDPKTKVIFFAEANT 296 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEE-E--CCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEee-e--cCCCCCcceEEEeCCCCeEEEEeccC
Confidence 56889999998 88999987777788888741 111 1110000 0 0101123345665 567666666677
Q ss_pred CcEEEEEccC-C---ceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEE
Q 003467 562 RRIYVVDVSS-S---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 611 (817)
Q Consensus 562 g~i~v~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 611 (817)
..|..|+..+ . +....+... +.-..+..+.+.++|.+.+.+
T Consensus 297 ~aI~~w~~~~~~~~~~n~~~l~~d---------~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 297 KQVSCWNTQKMPLRMKNTDVVYTS---------SRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp SEEEEEETTSCSBCGGGEEEEEEC---------TTCCSEEEEEECTTSCEEEEE
T ss_pred CeEEEEeCCCCccccCceEEEEEC---------CCccccCeEEECCCCeEEEEE
Confidence 8899999764 1 112222210 023456677776666544444
No 380
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.19 E-value=1.6e+02 Score=23.00 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.2
Q ss_pred eeEEEECCCCCCCEEEEEc
Q 003467 693 VIGLSFSPSPSSSSVIIYS 711 (817)
Q Consensus 693 v~~l~f~p~~~~~~~~~~~ 711 (817)
...+.+.+||+ +++|+
T Consensus 86 ~~~l~Lq~dGN---lvly~ 101 (111)
T 3mez_A 86 NYAATLGPDQH---VTIYG 101 (111)
T ss_dssp CCEEEECTTSC---EEEEC
T ss_pred CEEEEECCCCe---EEEec
Confidence 45577888876 77775
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=28.81 E-value=4e+02 Score=25.58 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=104.2
Q ss_pred cEEEEecCCCeEEEEeCCcccccCCc--ccCCCCCCCceeeecceeec-CCeEEEEEeCCeEEEEEecccCCcccCCCCC
Q 003467 399 PMLISAGDDTKLFAYCANEFTKFSPH--EICPAPQRVPIHLVHNTIFS-HTSLLLVQYSCRLDILSVRLENNVESRSSSG 475 (817)
Q Consensus 399 ~~l~s~~~dg~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~ 475 (817)
++++..+.+|.++-.++..+...... .............+.....+ .+..++++..+.+.-.... +-........
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~--~ip~~~r~~~ 86 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY--EIKDSSRASK 86 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG--GSCC------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH--HCCCCCccCC
Confidence 48999999999999888776533211 11011111111222222222 2334444544443333222 1111000111
Q ss_pred CCCccceeeeeeecCCCCeEEEEec----CCCcEEEEEcCCceEEEEeecCCCCC-ceEEEeeecCCccccceeEEEEec
Q 003467 476 GHASTSLLVQVKSKASRKIICSTIS----NSGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSY 550 (817)
Q Consensus 476 g~~~~~~~~~~~~~~~~~i~~~~~s----~~g~~la~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~fsp 550 (817)
|. .....+.......|.++..- ++..++.++..|.++...+..-.... .- +....+.. ...+..+....
T Consensus 87 G~---~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G--~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 87 GQ---NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG--VIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp -C---BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C--EECBCCCT-TCCEEEEEEEC
T ss_pred Cc---ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc--EEEEecCC-CCEEEEEEEeC
Confidence 11 11112334444556555333 33445666788888877664321110 00 11123333 33455555555
Q ss_pred CCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 003467 551 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ 625 (817)
Q Consensus 551 d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~ 625 (817)
+...++..+.+|.+..+....-..... .......-.+. ....|..+..-.++..|++.+..|..+..+++..
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR--~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNR--GTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCT--TBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCC--CCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 567788899999999998754211100 00000000011 2445666655556678889999999999988543
No 382
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=25.24 E-value=6.2e+02 Score=26.69 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=29.4
Q ss_pred CCceeEEEeEEecCC---eEEEEcCCC----cEEEEeCCCCeEEEEeec
Q 003467 251 GPELCIWSLLSLRCG---TLVSADSTG----SVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 251 ~~~~~v~~v~~~~~~---~l~s~~~dg----~i~iwd~~~~~~~~~~~~ 292 (817)
+|...+....|.|+. .++.+.+++ -..+.|..+|+.+.....
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 577777777777774 466665542 356789999999887754
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.99 E-value=4.3e+02 Score=24.40 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=67.2
Q ss_pred eeEEEEecCCCEEEEEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEEC
Q 003467 543 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 622 (817)
Q Consensus 543 i~~~~fspd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~ 622 (817)
+..+........|+..+..|.++-+....-...+. .+..-...-.+. ....|.++....++.+|+.++..|.++...+
T Consensus 35 l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~-~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~ 112 (256)
T 1zvt_A 35 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG-QGEPLTGKLTLP-PGATVDHMLMESDDQKLLMASDAGYGFVCTF 112 (256)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSS-CCEEGGGTCCCC-TTCCEEEEECCCTTCEEEEEBTTSEEEEEEG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCC-CCeEeeeeecCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEH
Confidence 33443344455667778888877776532100000 000000000011 2456766654456778999999999999988
Q ss_pred CCcce-----EEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCC
Q 003467 623 EIQRQ-----HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 668 (817)
Q Consensus 623 ~~~~~-----~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~ 668 (817)
+.... ...+....+..+..+...+++.+.|+..+.+|.+..|+++.
T Consensus 113 ~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 113 NDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 54321 11111112245555445411456788999999998888864
No 384
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.97 E-value=4.8e+02 Score=24.95 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=93.6
Q ss_pred eecCCCCeEEEE-ecCCCcEEEEEcCCceEEEEeecCCC------CCceEEEeeecCCccccceeEEEEec---CCCEEE
Q 003467 487 KSKASRKIICST-ISNSGMLFAYSDHVKPSLFELKKGKV------GQGEWIINKRQLPRKLQFAHSMIFSY---DSSQLI 556 (817)
Q Consensus 487 ~~~~~~~i~~~~-~s~~g~~la~~~~~~i~l~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~fsp---d~~~l~ 556 (817)
..+..+.+..+. .+....++..++.|.++-+....-.. +..+ .....+.. ...+..+..-+ +..+|+
T Consensus 42 ~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i--~~~l~l~~-~e~i~~~~~~~~~~~~~~ll 118 (312)
T 1suu_A 42 DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNI--SELINLGD-QEEILTIKNSKDLTDDAYLL 118 (312)
T ss_dssp CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBG--GGTSCCCT-TCCEEEEEEESCCCTTCEEE
T ss_pred ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcCh--hhccCCCC-CCEEEEEEEeccCCCCCEEE
Confidence 334445544443 33444556667778766665532111 1110 00011111 12344443332 467888
Q ss_pred EEecCCcEEEEEccCCceeeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCcc-------eEE
Q 003467 557 IAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-------QHW 629 (817)
Q Consensus 557 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~~-------~~~ 629 (817)
..+.+|.++...+......+ -.+ ...-.+. ..+.+..+....++..++.++.+|.+..++++.-. -..
T Consensus 119 ~~T~~G~~kr~~l~~~~~~r-~~G---~~~i~L~-~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~ 193 (312)
T 1suu_A 119 LTTASGKIARFESTDFKAVK-SRG---VIVIKLN-DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC 193 (312)
T ss_dssp EEETTSEEEEEEGGGGCC-----C---EECBCCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE
T ss_pred EEeCCCeEEEEEHHHhhccC-CCc---EEEEecC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE
Confidence 99999999999885432111 000 0000111 24555555555556788899999999999885421 111
Q ss_pred EEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCC
Q 003467 630 FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK 669 (817)
Q Consensus 630 ~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~ 669 (817)
.+....+..|.++.... ++..|++.+..|..+..+++.-
T Consensus 194 ~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 194 GMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGS
T ss_pred eEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHh
Confidence 12222335667766655 5667888899999998888654
No 385
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=23.48 E-value=2.6e+02 Score=21.66 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred cCCCEEEEeeCCCcEEEEECCCCceEEEEEeecCCCCCCCceeEEEeEEecCCeEEEEcCCCcEEEEeCCCCeEEEEeec
Q 003467 213 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 292 (817)
Q Consensus 213 ~dg~~l~s~~~dg~i~vwd~~~g~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (817)
+++.+.+.-..||.+.+++ .+..+..-.. .....-..+.+..+|.|+.-+.++.+ +|.-. ..
T Consensus 18 ~~~~~~l~~~~dGnlvl~~--~~~~vW~sn~-------~~~~~~~~l~l~~dGNLVl~~~~~~~-~W~S~--------t~ 79 (110)
T 3a0c_A 18 VGPSYRLIMQGDCNFVLYD--SGKPVWASNT-------GGLGSGCRLTLHNNGNLVIYDQSNRV-IWQTK--------TN 79 (110)
T ss_dssp ETTTEEEEECTTSCEEEEE--TTEEEEECCC-------TTSCSSCEEEECTTSCEEEECTTCCE-EEECC--------CC
T ss_pred ECCCEEEEEcCCCcEEEEE--CCEEEEECCC-------CCCCCcEEEEEeCCCCEEEECCCCcE-EEecC--------CC
Q ss_pred CccCeeEEEEecCCCEEEEEccCCcEEEEE
Q 003467 293 HKGDVNALAAAPSHNRVFSTGSDGQVILYK 322 (817)
Q Consensus 293 h~~~v~~l~~s~~~~~l~~~~~dg~i~iw~ 322 (817)
.......+.+.++|+.++..+ .+|.
T Consensus 80 ~~~g~~~l~l~~dGnlvl~~~-----~~W~ 104 (110)
T 3a0c_A 80 GKEDHYVLVLQQDRNVVIYGP-----VVWA 104 (110)
T ss_dssp CSSSCCEEEECTTSCEEEECS-----EEEE
T ss_pred CCCCCEEEEEeCCccEEEECC-----CEec
No 386
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=22.51 E-value=2.9e+02 Score=21.83 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=28.6
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 602 SSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 602 s~dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
||+|.+-+.-..||.+.+|+- +...|.-.......-..+.+.. +|++++. ..++. .+|.-
T Consensus 27 S~~g~~~L~~~~dgnlvly~~--~~~vW~sn~~~~~~~~~l~l~~-dGNLVl~-d~~~~-~lW~S 86 (119)
T 1b2p_A 27 FGTHVYRFIMQTDCNLVLYDN--NNPIWATNTGGLGNGCRAVLQP-DGVLVVI-TNENV-TVWQS 86 (119)
T ss_dssp ETTEEEEEEECTTSCEEEEET--TEEEEECCCTTSCSSCEEEECT-TSCEEEE-CTTCC-EEEEC
T ss_pred CCCCCEEEEEecCCCEEEEEC--CEEEEeCCCccCCCceEEEEcc-CCEEEEE-eCCCc-EEEcC
Confidence 566665555556666666653 3444443322111123455665 6664443 23333 35644
No 387
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.96 E-value=2.8e+02 Score=21.43 Aligned_cols=58 Identities=7% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEc
Q 003467 604 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 666 (817)
Q Consensus 604 dg~~la~~~~dg~i~vwd~~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~ 666 (817)
+|++.+.-..||.+.+|+- +...|.........-..+.+.. +|++++. ..++. .+|.-
T Consensus 18 ~g~~~L~~q~dGnLvly~~--~~~vW~snt~~~~~~~~l~l~~-dGNLvl~-~~~~~-~~W~S 75 (109)
T 3dzw_A 18 NGRYVFIMQEDCNLVLYDV--DKPIWATNTGGLDRRCHLSMQS-DGNLVVY-SPRNN-PIWAS 75 (109)
T ss_dssp ETTEEEEECTTSCEEEEET--TEEEEECCCTTSSSSCEEEECT-TSCEEEE-CTTSC-EEEEC
T ss_pred CCCEEEEEcCCCcEEEEeC--CEEEEECCcccCCCCEEEEEeC-CCCEEEE-CCCCC-EEEEC
Confidence 4555555555666666654 2334443222111223456666 6765444 33343 36643
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.24 E-value=4.9e+02 Score=24.02 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=80.2
Q ss_pred EEEEEecCCcEEEEEccCCce-eeeeccCcccccccCCCCCCceeEEEEccCCCEEEEEeCCCcEEEEECCCc---ceEE
Q 003467 554 QLIIAGHDRRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ---RQHW 629 (817)
Q Consensus 554 ~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~~dg~i~vwd~~~~---~~~~ 629 (817)
.+++.+.+|.|+--....... ...+. ....+..+........|+..+..|.++-+..... +..-
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk------------e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G 71 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK------------AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQG 71 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC------------TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC------------CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCC
Confidence 456677888887666432110 00122 2344555555455557777788888776654321 1100
Q ss_pred -----EEecCCCCCeEEEEecCCCCCeEEEEecCCeEEEEEcCCCccccchhcccCccCcchhcCCCceeEEEECCCCCC
Q 003467 630 -----FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSS 704 (817)
Q Consensus 630 -----~~~~~~~~~i~~l~~sp~d~~~l~~~~~d~~i~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~l~f~p~~~~ 704 (817)
.++...+..|.++.... ++.+|+.++..|.++...++.-... ++.. .....+.. .+.+.++...+++..
T Consensus 72 ~~i~~~i~L~~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~---~r~G-~~~i~L~~-~d~lv~~~~~~~~~~ 145 (256)
T 1zvt_A 72 EPLTGKLTLPPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVAR---NRAG-KALITLPE-NAHVMPPVVIEDASD 145 (256)
T ss_dssp EEGGGTCCCCTTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCC---STTC-EECBCCCT-TCCBCCCEECCCTTC
T ss_pred eEeeeeecCCCCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhccc---CcCc-eEEEEECC-CCEEEEEEEecCCCC
Confidence 11112335677774434 5667889999999998887543210 0111 11222322 356666655533233
Q ss_pred CEEEEEcCceEEEEEcCC
Q 003467 705 SSVIIYSARAMCVIDFGR 722 (817)
Q Consensus 705 ~~~~~~~~~~~~~~d~~~ 722 (817)
..+++.....+.+|..+.
T Consensus 146 ~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 146 MLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred EEEEEcCCCeEEEEEHHH
Confidence 455566666677777654
Done!