BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003468
(817 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 626 bits (1614), Expect = e-179, Method: Compositional matrix adjust.
Identities = 378/788 (47%), Positives = 505/788 (64%), Gaps = 48/788 (6%)
Query: 26 AWAKDVEECEEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVR 85
A +K EEC +GV+ GL+ +VK+ E YG+NEL EG S+++L+LEQF D LVR
Sbjct: 4 AHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVR 63
Query: 86 IXXXXXXXXXXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALK 145
I W+ E GE +TAFVEP VI LILI NAIVG+WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 146 EIQSEQATVTR-DGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSL 204
E + E V R D K + + A+++VPGDIVE+ VGDKVPAD+R+L + S+T+RV+Q L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 205 TGESEAVSKTVKTVPENSDI-QGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIH 263
TGES +V K + VP+ + Q KK M+F+GT + G +V TG+ TEIGK+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM- 239
Query: 264 EASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEK 323
A+ ++ TPL++KL++FGE L+ +I +IC VWLIN+ +F + W R
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRG------- 291
Query: 324 CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSD 383
YYF+IAVALAVAAIPEGLPAVITTCLALGTR+MA+KNA+VR LPSVETLGCT+VICSD
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 351
Query: 384 KTGTLTTNQMAVTKLVAVGSRAG---TLRSFNVQGTTYNPSDGRIEG-WPV--GRMDANL 437
KTGTLTTNQM+V K+ + G L F+V G+TY P ++ PV G+ D L
Sbjct: 352 KTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDG-L 410
Query: 438 QTIAKISAVCNDAGVE--QSGNHYVASGMPTEAALKVMVEKMG-FPEGVNHGSSSSPEDV 494
+A I A+CND+ ++ ++ Y G TE AL +VEKM F V + S E
Sbjct: 411 VELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV--ERA 468
Query: 495 LRCCQLWNTLEQRFATLEFDRDRKSMGVLVNSSSGN----KKLLVKGAVENLLERSSFVQ 550
C + L ++ TLEF RDRKSM V + + K+ VKGA E +++R ++V+
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVR 528
Query: 551 LLDGSVVELDQYSRDLILQSLQEMSS--TALRCLGFAYKDDLREFETYDGDEDHPAHQLL 608
+ + V + ++ IL ++E + LRCL A +D + E +L
Sbjct: 529 -VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVL 577
Query: 609 LNPTNYSSIESRLVFVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICRE 668
+ T + E+ L FVG+VG+ DPPR+EV +I+ C+ AGIRV++ITGDNK TA AICR
Sbjct: 578 DDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRR 637
Query: 669 IGVFGAHEDISSQSITGKEFMDIH--NQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGE 726
IG+FG +ED++ ++ TG+EF D+ Q+ R+ F+R EP HK +IV L+ E
Sbjct: 638 IGIFGENEDVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPTHKSKIVEYLQSFDE 695
Query: 727 VVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYN 786
+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDNF TIVAAV EGR+IYN
Sbjct: 696 ITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYN 754
Query: 787 NMKAFIRY 794
NMK FIRY
Sbjct: 755 NMKQFIRY 762
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 625 bits (1612), Expect = e-179, Method: Compositional matrix adjust.
Identities = 374/789 (47%), Positives = 509/789 (64%), Gaps = 49/789 (6%)
Query: 26 AWAKDVEECEEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVR 85
A +K EEC +GV+ GL+ +VK+ E YG+NEL EG S+++L++EQF D LVR
Sbjct: 5 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 64
Query: 86 IXXXXXXXXXXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALK 145
I W+ E GE ITAFVEP VI LILI NAIVG+WQE NAE A+EALK
Sbjct: 65 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121
Query: 146 EIQSEQATVTR-DGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSL 204
E + E V R D K + + A+++VPGDIVE+ VGDKVPAD+R+L + S+T+RV+Q L
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181
Query: 205 TGESEAVSKTVKTVPENSDI-QGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIH 263
TGES +V K + VP+ + Q KK M+F+GT + G +V TG++TEIGK+ Q+
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 240
Query: 264 EASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEK 323
A+ ++ TPL++KL++FGE L+ +I +IC VWLIN+ +F + W R
Sbjct: 241 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRG------- 292
Query: 324 CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSD 383
YYF+IAVALAVAAIPEGLPAVITTCLALGTR+MA+KNA+VR LPSVETLGCT+VICSD
Sbjct: 293 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 352
Query: 384 KTGTLTTNQMAVTKLVAVGSRAG---TLRSFNVQGTTYNPSDGRIEG-WPV--GRMDANL 437
KTGTLTTNQM+V K+ + G +L F++ G+TY P ++ P+ G+ D L
Sbjct: 353 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDG-L 411
Query: 438 QTIAKISAVCNDAGVE--QSGNHYVASGMPTEAALKVMVEKMG-FPEGVNHGSSSSPEDV 494
+A I A+CND+ ++ ++ Y G TE AL +VEKM F V + S E
Sbjct: 412 VELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV--ERA 469
Query: 495 LRCCQLWNTLEQRFATLEFDRDRKSMGVLVNSSSGNK-----KLLVKGAVENLLERSSFV 549
C + L ++ TLEF RDRKSM V + + ++ K+ VKGA E +++R ++V
Sbjct: 470 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV 529
Query: 550 QLLDGSVVELDQYSRDLILQSLQEMSS--TALRCLGFAYKDDLREFETYDGDEDHPAHQL 607
+ + + V + ++ IL ++E + LRCL A +D + E +
Sbjct: 530 R-VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMV 578
Query: 608 LLNPTNYSSIESRLVFVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICR 667
L + + + E+ L FVG+VG+ DPPR+EV +I+ C+ AGIRV++ITGDNK TA AICR
Sbjct: 579 LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICR 638
Query: 668 EIGVFGAHEDISSQSITGKEFMDIH--NQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDG 725
IG+FG +E+++ ++ TG+EF D+ Q+ R+ F+R EP HK +IV L+
Sbjct: 639 RIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPSHKSKIVEYLQSYD 696
Query: 726 EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIY 785
E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDNF TIVAAV EGR+IY
Sbjct: 697 EITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 755
Query: 786 NNMKAFIRY 794
NNMK FIRY
Sbjct: 756 NNMKQFIRY 764
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 625 bits (1612), Expect = e-179, Method: Compositional matrix adjust.
Identities = 374/789 (47%), Positives = 509/789 (64%), Gaps = 49/789 (6%)
Query: 26 AWAKDVEECEEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVR 85
A +K EEC +GV+ GL+ +VK+ E YG+NEL EG S+++L++EQF D LVR
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 86 IXXXXXXXXXXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALK 145
I W+ E GE ITAFVEP VI LILI NAIVG+WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 146 EIQSEQATVTR-DGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSL 204
E + E V R D K + + A+++VPGDIVE+ VGDKVPAD+R+L + S+T+RV+Q L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 205 TGESEAVSKTVKTVPENSDI-QGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIH 263
TGES +V K + VP+ + Q KK M+F+GT + G +V TG++TEIGK+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 264 EASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEK 323
A+ ++ TPL++KL++FGE L+ +I +IC VWLIN+ +F + W R
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRG------- 291
Query: 324 CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSD 383
YYF+IAVALAVAAIPEGLPAVITTCLALGTR+MA+KNA+VR LPSVETLGCT+VICSD
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSD 351
Query: 384 KTGTLTTNQMAVTKLVAVGSRAG---TLRSFNVQGTTYNPSDGRIEG-WPV--GRMDANL 437
KTGTLTTNQM+V K+ + G +L F++ G+TY P ++ P+ G+ D L
Sbjct: 352 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDG-L 410
Query: 438 QTIAKISAVCNDAGVE--QSGNHYVASGMPTEAALKVMVEKMG-FPEGVNHGSSSSPEDV 494
+A I A+CND+ ++ ++ Y G TE AL +VEKM F V + S E
Sbjct: 411 VELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV--ERA 468
Query: 495 LRCCQLWNTLEQRFATLEFDRDRKSMGVLVNSSSGNK-----KLLVKGAVENLLERSSFV 549
C + L ++ TLEF RDRKSM V + + ++ K+ VKGA E +++R ++V
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV 528
Query: 550 QLLDGSVVELDQYSRDLILQSLQEMSS--TALRCLGFAYKDDLREFETYDGDEDHPAHQL 607
+ + + V + ++ IL ++E + LRCL A +D + E +
Sbjct: 529 R-VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMV 577
Query: 608 LLNPTNYSSIESRLVFVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICR 667
L + + + E+ L FVG+VG+ DPPR+EV +I+ C+ AGIRV++ITGDNK TA AICR
Sbjct: 578 LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICR 637
Query: 668 EIGVFGAHEDISSQSITGKEFMDIH--NQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDG 725
IG+FG +E+++ ++ TG+EF D+ Q+ R+ F+R EP HK +IV L+
Sbjct: 638 RIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPSHKSKIVEYLQSYD 695
Query: 726 EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIY 785
E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDNF TIVAAV EGR+IY
Sbjct: 696 EITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 786 NNMKAFIRY 794
NNMK FIRY
Sbjct: 755 NNMKQFIRY 763
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 622 bits (1604), Expect = e-178, Method: Compositional matrix adjust.
Identities = 373/789 (47%), Positives = 508/789 (64%), Gaps = 49/789 (6%)
Query: 26 AWAKDVEECEEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVR 85
A +K EEC +GV+ GL+ +VK+ E YG+NEL EG S+++L++EQF D LVR
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 86 IXXXXXXXXXXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALK 145
I W+ E GE ITAFVEP VI LILI NAIVG+WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 146 EIQSEQATVTR-DGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSL 204
E + E V R D K + + A+++VPGDIVE+ VGDKVPAD+R+L + S+T+RV+Q L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 205 TGESEAVSKTVKTVPENSDI-QGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIH 263
TGES +V K + VP+ + Q KK M+F+GT + G +V TG++TEIGK+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 264 EASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEK 323
A+ ++ TPL++KL++FGE L+ +I +IC VWLIN+ +F + W R
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRG------- 291
Query: 324 CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSD 383
YYF+IAVALAVAAIPEGLPAVITTCLALGTR+MA+KNA+VR LPSVETLGCT+VICS
Sbjct: 292 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSX 351
Query: 384 KTGTLTTNQMAVTKLVAVGSRAG---TLRSFNVQGTTYNPSDGRIEG-WPV--GRMDANL 437
KTGTLTTNQM+V K+ + G +L F++ G+TY P ++ P+ G+ D L
Sbjct: 352 KTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDG-L 410
Query: 438 QTIAKISAVCNDAGVE--QSGNHYVASGMPTEAALKVMVEKMG-FPEGVNHGSSSSPEDV 494
+A I A+CND+ ++ ++ Y G TE AL +VEKM F V + S E
Sbjct: 411 VELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV--ERA 468
Query: 495 LRCCQLWNTLEQRFATLEFDRDRKSMGVLVNSSSGNK-----KLLVKGAVENLLERSSFV 549
C + L ++ TLEF RDRKSM V + + ++ K+ VKGA E +++R ++V
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYV 528
Query: 550 QLLDGSVVELDQYSRDLILQSLQEMSS--TALRCLGFAYKDDLREFETYDGDEDHPAHQL 607
+ + + V + ++ IL ++E + LRCL A +D + E +
Sbjct: 529 R-VGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMV 577
Query: 608 LLNPTNYSSIESRLVFVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICR 667
L + + + E+ L FVG+VG+ DPPR+EV +I+ C+ AGIRV++ITGDNK TA AICR
Sbjct: 578 LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICR 637
Query: 668 EIGVFGAHEDISSQSITGKEFMDIH--NQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDG 725
IG+FG +E+++ ++ TG+EF D+ Q+ R+ F+R EP HK +IV L+
Sbjct: 638 RIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPSHKSKIVEYLQSYD 695
Query: 726 EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIY 785
E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDNF TIVAAV EGR+IY
Sbjct: 696 EITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 786 NNMKAFIRY 794
NNMK FIRY
Sbjct: 755 NNMKQFIRY 763
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 248/796 (31%), Positives = 386/796 (48%), Gaps = 97/796 (12%)
Query: 31 VEECEEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVRIXXXX 90
V E E+KY + GLS + G N L GT + Q L +
Sbjct: 58 VAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVA 117
Query: 91 XXXXXXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSE 150
EG L + +++V G +QE + + + K + +
Sbjct: 118 AAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177
Query: 151 QATVTRDGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEA 210
QATV RDG K ++A +LV GD+VE+K GD+VPAD+R+L+ + +V+ SLTGESE
Sbjct: 178 QATVIRDGDKF-QINADQLVVGDLVEMKGGDRVPADIRILQ--AQGRKVDNSSLTGESEP 234
Query: 211 VSKTVKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEE 270
+++ + E S ++ + + F T + GT LV NTG T IG++ S + +NE+
Sbjct: 235 QTRSPECTHE-SPLETRN-IAFFSTMCLEGTAQGLVVNTGDRTIIGRIAS-LASGVENEK 291
Query: 271 DTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEI 330
TP+ ++ F + +I L L +F+ + ++F + +F
Sbjct: 292 -TPIAIEIEHF-------VDIIAGLAILFGATFFIVAMCIG-------YTFLRAMVFF-- 334
Query: 331 AVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTT 390
+A+ VA +PEGL A +T CL+L +++A KN +V+ L +VETLG T+VICSDKTGTLT
Sbjct: 335 -MAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQ 393
Query: 391 NQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDGRIEGWPVGRMDANLQTIAKISAVCNDA 450
N+M V+ L + + G T++ S E W + + ++ +CN A
Sbjct: 394 NRMTVSHLWFDNHIHSADTTEDQSGQTFDQSS---ETW---------RALCRVLTLCNRA 441
Query: 451 GVEQSGN-----HYVASGMPTEAALKVMVEKMGFPEGVNHGSSSSPEDVLRCCQL----W 501
+ + + G +E AL + F E + E + C++
Sbjct: 442 AFKSGQDAVPVPKRIVIGDASETAL------LKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 502 NTLEQRFATLEFDRDRKSMGVLVNSSSGNKKLLVKGAVENLLERSSFVQLLDGSVVELDQ 561
N + TLE RD + + L++KGA E +LER S + L+ G + LD+
Sbjct: 496 NKFQLSIHTLEDPRDPRHV------------LVMKGAPERVLERCSSI-LIKGQELPLDE 542
Query: 562 YSRDLILQSLQEMSSTALRCLGFAYKDDLREFETYDGDEDHP-AHQLLLNPTNYSSIESR 620
R+ + + R LGF + Y ++D+P + + N+ + S
Sbjct: 543 QWREAFQTAYLSLGGLGERVLGFC--------QLYLSEKDYPPGYAFDVEAMNFPT--SG 592
Query: 621 LVFVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFG----AHE 676
L F G+V + DPPR V A+ C+ AGIRV+++TGD+ TA+AI +G+ E
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVE 652
Query: 677 DISSQ----------------SITGKEF--MDIHNQKNYLRQDGGLLFSRAEPRHKQEIV 718
DI+++ I G + MD LR ++F+R P+ K IV
Sbjct: 653 DIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIV 712
Query: 719 RLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAV 778
+ G +VA+TGDGVND+PALK ADIGVAMGIAG++ AK A+DM+L DDNF +IV V
Sbjct: 713 ESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGV 772
Query: 779 GEGRSIYNNMKAFIRY 794
+GR I++N+K I Y
Sbjct: 773 EQGRLIFDNLKKSIAY 788
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 221/717 (30%), Positives = 365/717 (50%), Gaps = 111/717 (15%)
Query: 117 LVIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVE 176
+V+ ++I+ +QE+ + K +E+ K + +QA V R+G+K+ S++A+E+V GD+VE
Sbjct: 109 VVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKM-SINAEEVVVGDLVE 167
Query: 177 LKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTT 236
+K GD++PAD+R++ +++ +V+ SLTGESE +++ EN + + F T
Sbjct: 168 VKGGDRIPADLRII--SANGCKVDNSSLTGESEPQTRSPDFTNENP--LETRNIAFFSTN 223
Query: 237 VVNGTCTCLVTNTGMNTEIGKVHSQIH--EASQNEEDTPLKKKLNQFGEVLTMIIGVICA 294
V GT +V TG T +G++ + E Q TP+ ++ F I +I
Sbjct: 224 CVEGTARGIVVYTGDRTVMGRIATLASGLEGGQ----TPIAAEIEHF-------IHIITG 272
Query: 295 LVWLINVKYF---LTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCL 351
+ + V +F L EY W F + + VA +PEGL A +T CL
Sbjct: 273 VAVFLGVSFFILSLILEYT--WLEAVIF-----------LIGIIVANVPEGLLATVTVCL 319
Query: 352 ALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSF 411
L ++MA+KN LV+ L +VETLG T+ ICSDKTGTLT N+M V + + +
Sbjct: 320 TLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTE 379
Query: 412 NVQGTTYNPSDGRIEGWPVGRMDANLQTIAKISAVCNDAGVEQSGNHY-----VASGMPT 466
N G +++ + A +++I+ +CN A + + + +G +
Sbjct: 380 NQSGVSFD------------KTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS 427
Query: 467 EAALKVMVEKMGFPEGVNHGSSSSPEDVLRCCQLWNTLEQRFATL---EFDRDRK---SM 520
E+AL +E CC + +R+ + F+ K S+
Sbjct: 428 ESALLKCIE--------------------LCCGSVKEMRERYTKIVEIPFNSTNKYQLSI 467
Query: 521 GVLVNSSSGNKKLLVKGAVENLLERSSFVQLLDGSVVELDQYSRDLILQSLQEMSSTALR 580
N++ L++KGA E +L+R S + L+ G LD+ +D + E+ R
Sbjct: 468 HKNPNTAEPRHLLVMKGAPERILDRCSSI-LIHGKEQPLDEELKDAFQNAYLELGGLGER 526
Query: 581 CLGFAYKDDLREFETYDGDEDHP-AHQLLLNPTNYSSIESRLVFVGMVGLRDPPREEVRQ 639
LGF + + DE P Q + N+ L FVG++ + DPPR V
Sbjct: 527 VLGFCH--------LFLPDEQFPEGFQFDTDDVNFPL--DNLCFVGLISMIDPPRAAVPD 576
Query: 640 AIEDCKAAGIRVMVITGDNKNTAEAICREIGVFG----AHEDISSQ-------------- 681
A+ C++AGI+V+++TGD+ TA+AI + +G+ EDI+++
Sbjct: 577 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 636
Query: 682 --SITGKEFMDIHNQK--NYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVND 737
+ G + D+ +++ + L+ ++F+R P+ K IV + G +VA+TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 738 APALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRY 794
+PA K ADIGVAMGIAG++V+K+A+DM+L DDNF +IV V EGR I++N+K I Y
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 753
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 218/715 (30%), Positives = 363/715 (50%), Gaps = 107/715 (14%)
Query: 117 LVIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVE 176
+V+ ++I+ +QE+ + K +E+ K + +QA V R+G+K+ S++A+E+V GD+VE
Sbjct: 103 VVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKM-SINAEEVVVGDLVE 161
Query: 177 LKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTT 236
+K GD++PAD+R++ +++ +V+ SLTGESE +++ EN + + F T
Sbjct: 162 VKGGDRIPADLRII--SANGCKVDNSSLTGESEPQTRSPDFTNENP--LETRNIAFFSTN 217
Query: 237 VVNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEEDTPLKKKLNQFGEVLTMIIGVICALV 296
V GT +V TG T +G++ + + TP+ ++ F I +I +
Sbjct: 218 CVEGTARGIVVYTGDRTVMGRIATLASGLEGGQ--TPIAAEIEHF-------IHIITGVA 268
Query: 297 WLINVKYF---LTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLAL 353
+ V +F L EY W F + + VA +PEGL A +T CL L
Sbjct: 269 VFLGVSFFILSLILEYT--WLEAVIF-----------LIGIIVANVPEGLLATVTVCLTL 315
Query: 354 GTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNV 413
++MA+KN LV+ L +VETLG T+ ICS KTGTLT N+M V + + + N
Sbjct: 316 TAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQ 375
Query: 414 QGTTYNPSDGRIEGWPVGRMDANLQTIAKISAVCNDAGVEQSGNHY-----VASGMPTEA 468
G +++ + A +++I+ +CN A + + + +G +E+
Sbjct: 376 SGVSFD------------KTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASES 423
Query: 469 ALKVMVEKMGFPEGVNHGSSSSPEDVLRCCQLWNTLEQRFATL---EFDRDRK---SMGV 522
AL +E CC + +R+ + F+ K S+
Sbjct: 424 ALLKCIE--------------------LCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHK 463
Query: 523 LVNSSSGNKKLLVKGAVENLLERSSFVQLLDGSVVELDQYSRDLILQSLQEMSSTALRCL 582
N++ L++KGA E +L+R S + L+ G LD+ +D + E+ R L
Sbjct: 464 NPNTAEPRHLLVMKGAPERILDRCSSI-LIHGKEQPLDEELKDAFQNAYLELGGLGERVL 522
Query: 583 GFAYKDDLREFETYDGDEDHP-AHQLLLNPTNYSSIESRLVFVGMVGLRDPPREEVRQAI 641
GF + + DE P Q + N+ L FVG++ + DPPR V A+
Sbjct: 523 GFCH--------LFLPDEQFPEGFQFDTDDVNFPL--DNLCFVGLISMIDPPRAAVPDAV 572
Query: 642 EDCKAAGIRVMVITGDNKNTAEAICREIGVFG----AHEDISSQ---------------- 681
C++AGI+V+++TGD+ TA+AI + +G+ EDI+++
Sbjct: 573 GKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKAC 632
Query: 682 SITGKEFMDIHNQK--NYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAP 739
+ G + D+ +++ + L+ ++F+R P+ K IV + G +VA+TGDGVND+P
Sbjct: 633 VVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP 692
Query: 740 ALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRY 794
A K ADIGVAMGIAG++V+K+A+DM+L DDNF +IV V EGR I++N+K I Y
Sbjct: 693 ASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 747
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 221/720 (30%), Positives = 366/720 (50%), Gaps = 117/720 (16%)
Query: 117 LVIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVE 176
+V+ ++IV +QE+ + + +++ K + +QA V RDG+K +++A+ +V GD+VE
Sbjct: 139 VVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEK-STINAEFVVAGDLVE 197
Query: 177 LKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTT 236
+K GD++PAD+R++ ++ +V+ SLTGESE +++ + EN + + F T
Sbjct: 198 VKGGDRIPADLRII--SAHGCKVDNSSLTGESEPQTRSPEFSSENP--LETRNIAFFSTN 253
Query: 237 VVNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEEDTPLKKKLNQFGEVLTMIIGVICALV 296
V GT +V TG T +G++ + TP+ ++ F ++T + +
Sbjct: 254 CVEGTARGVVVYTGDRTVMGRIATLASGLEVGR--TPIAIEIEHFIHIITGVAVFLGVSF 311
Query: 297 WLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTR 356
+++++ +W E + + + VA +PEGL A +T CL L +
Sbjct: 312 FILSLILGYSW-------------LEAVIFL----IGIIVANVPEGLLATVTVCLTLTAK 354
Query: 357 KMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQ-- 414
+MA+KN LV+ L +VETLG T+ ICSDKTGTLT N+M V + F+ Q
Sbjct: 355 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHM-----------WFDNQIH 403
Query: 415 --GTTYNPSDGRIEGWPVGRMDANLQTIAKISAVCNDAGVEQSGNHYV------ASGMPT 466
TT N S G + A +++I+A+CN A V Q+G V +G +
Sbjct: 404 EADTTENQS-----GAAFDKTSATWSALSRIAALCNRA-VFQAGQDNVPILKRSVAGDAS 457
Query: 467 EAALKVMVEKMGFPEGVNHGSSSSPEDVLRCCQLWNTLEQR---FATLEFDRDRK-SMGV 522
E+AL +E CC + R + F+ K + +
Sbjct: 458 ESALLKCIE--------------------LCCGSVQGMRDRNPKIVEIPFNSTNKYQLSI 497
Query: 523 LVNSSSGNKK--LLVKGAVENLLERSSFVQLLDGSVVELDQYSRDLILQSLQEMSSTALR 580
N S + L++KGA E +L+R S + LL+G+ L + ++ + E+ R
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTI-LLNGAEEPLKEDMKEAFQNAYLELGGLGER 556
Query: 581 CLGFAY----KDDLREFETYDGDEDHPAHQLLLNPTNYSSIESRLVFVGMVGLRDPPREE 636
LGF + +D E +D DE N+ + + L FVG++ + DPPR
Sbjct: 557 VLGFCHFALPEDKYNEGYPFDADE-----------PNFPTTD--LCFVGLMAMIDPPRAA 603
Query: 637 VRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFG----AHEDISSQ----------- 681
V A+ C++AGI+V+++TGD+ TA+AI + +G+ EDI+++
Sbjct: 604 VPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPR 663
Query: 682 -----SITGKEFMDIHNQ--KNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDG 734
+ G + D+ + + L ++F+R P+ K IV + G +VA+TGDG
Sbjct: 664 DAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDG 723
Query: 735 VNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRY 794
VND+PALK ADIGVAMGI+G++V+K+A+DM+L DDNF +IV V EGR I++N+K I Y
Sbjct: 724 VNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAY 783
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 182/361 (50%), Gaps = 47/361 (13%)
Query: 35 EEKYGVNPKIGLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVRIXXXXXXXX 94
E+ + ++GL+ EV +RR YG N++ K E + F L F + +
Sbjct: 77 EDMLQTDTRVGLTSEEVVQRRRKYGLNQM-KEEKENHFLKFLGFFVGPIQFVM------- 128
Query: 95 XXXXWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATV 154
+G + +V+ VI +L++NA+VG QE A ++ LK+ + +A V
Sbjct: 129 ------EGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVV 182
Query: 155 TRDGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKT 214
RDG + + A E+VPGDI++++ G +PAD R++ + ++V+Q +LTGES AV K
Sbjct: 183 LRDGT-LKEIEAPEVVPGDILQVEEGTIIPADGRIVT-DDAFLQVDQSALTGESLAVDKH 240
Query: 215 VKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEEDTPL 274
K VFA + V G ++T TG NT +G+ + ++ AS
Sbjct: 241 ------------KGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGH--F 286
Query: 275 KKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVAL 334
+ LN G +L +++ +VW+ + + E +A+
Sbjct: 287 TEVLNGIGTILLILVIFTLLIVWVSSF-----------------YRSNPIVQILEFTLAI 329
Query: 335 AVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMA 394
+ +P GLPAV+TT +A+G +A+K A+V+KL ++E+L ++CSDKTGTLT N+++
Sbjct: 330 TIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLS 389
Query: 395 V 395
+
Sbjct: 390 L 390
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 624 VGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSI 683
+G++ DPPR + + + + K G+ + ++TGD A R++G+ +++ +
Sbjct: 527 LGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL--GTNIYNAERL 584
Query: 684 TGKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKL 743
D+ + Y + F+ P+HK +V +L++ G +VAMTGDGVNDAP+LK
Sbjct: 585 GLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKK 644
Query: 744 ADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRYGFC---HLE 800
AD G+A+ ++ A+ A+D+V G I+ A+ R I++ M A++ Y HLE
Sbjct: 645 ADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLE 703
Query: 801 ----------NHCLSLELNLDKAIF 815
N L++EL + AIF
Sbjct: 704 IFLGLWIAILNRSLNIELVVFIAIF 728
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 173/356 (48%), Gaps = 47/356 (13%)
Query: 45 GLSVGEVKKRREIYGYNELEKHEGTSIFQLILEQFNDTLVRIXXXXXXXXXXXXWYDGEE 104
GL+ E + R +I+G N+LE+ + + + + + +N L + DG
Sbjct: 32 GLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWN-PLSWVMEMAAIMAIALANGDGRP 90
Query: 105 GGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATVTRDGKKIPSL 164
+ I +L++N+ + +E+NA A AL + + V RDGK
Sbjct: 91 PDWQDFVG------IICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKW-SEQ 143
Query: 165 SAKELVPGDIVELKVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKTVKTVPENSDI 224
A LVPGDIV +K+GD +PAD RLL ++V+Q +LTGES V+K
Sbjct: 144 EAAILVPGDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPVTKH---------- 191
Query: 225 QGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEEDTPLKKKLNQFGEV 284
G++ VF+G+T G +V TG++T GK + +Q + F +V
Sbjct: 192 PGQE--VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ----------VGHFQKV 239
Query: 285 LTMIIGVICALVWLINVKYFLTWEYVDGWP---RNFKFSFEKCTYYFEIAVALAVAAIPE 341
LT IG C + ++ + E + +P R ++ + + L + IP
Sbjct: 240 LTA-IGNFC----ICSIAIGMVIEIIVMYPIQRRKYRDGIDNL-------LVLLIGGIPI 287
Query: 342 GLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTK 397
+P V++ +A+G+ +++Q+ A+ +++ ++E + V+CSDKTGTLT N+++V K
Sbjct: 288 AMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK 343
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Query: 623 FVGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIG----------VF 672
FVG++ L DPPR + + I G+ V +ITGD + R +G +
Sbjct: 479 FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 538
Query: 673 GAHEDISSQSITGKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 732
G H+D + SI +E ++ + DG F+ P HK EIV+ L+E +V MTG
Sbjct: 539 GTHKDANLASIPVEELIE--------KADG---FAGVFPEHKYEIVKKLQERKHIVGMTG 587
Query: 733 DGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFI 792
DGVNDAPALK ADIG+A+ A T+ A+ ASD+VL + I++AV R+I+ MK +
Sbjct: 588 DGVNDAPALKKADIGIAVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYT 646
Query: 793 RYG 795
Y
Sbjct: 647 IYA 649
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 33/174 (18%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ + D +E + A+++ K GI+V +ITGDN +AEAI RE+ +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 574
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 575 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 615
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRYGFCH 798
D+G+A+G +G++VA E+ D+VL D+ +VAA+ R + +K I + +
Sbjct: 616 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIY 668
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 34/266 (12%)
Query: 134 ESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLT 193
+S +A++ L +Q++ A V RDGK+I ++ +E+ GDIV ++ G+K+P D
Sbjct: 195 KSRTGEAIKKLVGLQAKTAVVIRDGKEI-AVPVEEVAVGDIVIVRPGEKIPVD------- 246
Query: 194 SSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGMNT 253
V VE S ES + V + D VF T G T G T
Sbjct: 247 --GVVVEGESYVDESMISGEPVPVLKSKGD------EVFGATINNTGVLKIRATRVGGET 298
Query: 254 EIGKVHSQIHEASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGW 313
+ ++ + +A ++ P+++ ++ ++ V L+ + F+ W ++
Sbjct: 299 LLAQIVKLVEDAMGSK--PPIQRLADK-------VVAYFIPTVLLVAISAFIYWYFIAHA 349
Query: 314 PRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVET 373
P F F+ +A+ V A P T L +G K A+ L++ ++E
Sbjct: 350 PLLFAFT---------TLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEV 400
Query: 374 LGCTTVICSDKTGTLTTNQMAVTKLV 399
T + DKTGTLT + VT LV
Sbjct: 401 AEKVTAVIFDKTGTLTKGKPEVTDLV 426
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 33/174 (18%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ + D +E + A+++ K GI+V +ITGDN +AEAI RE+ +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 496
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 497 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 537
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRYGFCH 798
D+G+A+G +G++VA E+ D+VL D+ +VAA+ R + +K I + +
Sbjct: 538 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIY 590
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 34/266 (12%)
Query: 134 ESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLT 193
+S +A++ L +Q++ A V RDGK+I ++ +E+ GDIV ++ G+K+P D ++
Sbjct: 117 KSRTGEAIKKLVGLQAKTAVVIRDGKEI-AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 175
Query: 194 SSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGMNT 253
S V++ ++GE V K+ K VF T G T G T
Sbjct: 176 S---YVDESMISGEPVPVLKS------------KGDEVFGATINNTGVLKIRATRVGGET 220
Query: 254 EIGKVHSQIHEASQNEEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKYFLTWEYVDGW 313
+ ++ + +A ++ P+++ ++ ++ V L+ + F+ W ++
Sbjct: 221 LLAQIVKLVEDAMGSK--PPIQRLADK-------VVAYFIPTVLLVAISAFIYWYFIAHA 271
Query: 314 PRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVET 373
P F F+ +A+ V A P T L +G K A+ L++ ++E
Sbjct: 272 PLLFAFT---------TLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEV 322
Query: 374 LGCTTVICSDKTGTLTTNQMAVTKLV 399
T + DKTGTLT + VT LV
Sbjct: 323 AEKVTAVIFDKTGTLTKGKPEVTDLV 348
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 33/165 (20%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ + D +E + A+++ K GI+V +ITGDN +AEAI RE+ +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 203 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMK 789
D+G+A+G +G++VA E+ D+VL D+ +VAA+ R + +K
Sbjct: 244 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 354 GTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLV 399
G+RK A+ L++ ++E T + DKTGTLT + VT LV
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLV 54
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 33/165 (20%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ + D +E + A+++ K GI+V +ITGDN +AEAI RE+ +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 203 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMK 789
D+G+A+G +G++VA E+ D+VL D+ +VAA+ R + +K
Sbjct: 244 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 354 GTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLV 399
G+RK A+ L++ ++E T + DKTGTLT + VT LV
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLV 54
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 33/177 (18%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ L D R E R+AI KA GI+ M++TGDN+ A+ + E+G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
+Y F+ P K E V+ +++ V AM GDGVNDAPAL A
Sbjct: 184 ----------DDY--------FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQA 224
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRYGFCHLEN 801
D+G+A+G AGT+VA E +D+VL ++ + A V R Y+ + E
Sbjct: 225 DVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWSHPQFEK 280
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 33/154 (21%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ + D +E + A+++ K GI+V ITGDN +AEAI RE+ +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL------------- 182
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 183 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 223
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAV 778
D+G+A+G +G++VA E+ D+VL D+ +VAA+
Sbjct: 224 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 256
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 33/165 (20%)
Query: 625 GMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSIT 684
G++ L D R E R+AI KA GI+ M++TGDN+ A+ + E+G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 685 GKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 744
+Y F+ P K E V+ +++ V AM GDGVNDAPAL A
Sbjct: 184 ----------DDY--------FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQA 224
Query: 745 DIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMK 789
D+G+A+G AGT+VA E +D+VL ++ + A V R Y+ ++
Sbjct: 225 DVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 32/175 (18%)
Query: 624 VGMVGLRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSI 683
V ++ + DP + + I + + +GI ++++TGD+K TAEA+ +G+ +I
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM---- 601
Query: 684 TGKEFMDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKL 743
P K IV LK+ G +VAM GDGVNDAPAL
Sbjct: 602 ---------------------------PEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
Query: 744 ADIGVAMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYNNMKAFIRYGFCH 798
ADIG+AMG GT+VA E++ + L + I A S +N++ + + F +
Sbjct: 635 ADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIY 688
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 114/282 (40%), Gaps = 32/282 (11%)
Query: 118 VIFLILIVNAIVGIWQESNAEKALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVEL 177
VI ++++ ++ + A+ AL ++ E A ++ +S + GD++ +
Sbjct: 193 VITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRV 252
Query: 178 KVGDKVPADMRLLRLTSSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTTV 237
+ G+K+P D + S V++ +TGE V+K V T
Sbjct: 253 RPGEKIPVDGEVQEGRSF---VDESMVTGEPIPVAKE------------ASAKVIGATIN 297
Query: 238 VNGTCTCLVTNTGMNTEIGKVHSQIHEASQNEEDTPLKKKLNQFGEVLTMIIGVICALVW 297
G+ + G +T + ++ + +A ++ P+++ + + G V
Sbjct: 298 QTGSFVMKALHVGSDTMLARIVQMVSDAQRSR--APIQRLADT-------VSGWFVPAVI 348
Query: 298 LINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRK 357
L+ V F+ W + P +Y AV++ + A P L + +G K
Sbjct: 349 LVAVLSFIVWALLGPQP--------ALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGK 400
Query: 358 MAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTKLV 399
AQ L++ ++E + + DKTGTLT +T++V
Sbjct: 401 GAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV 442
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 41/145 (28%)
Query: 634 REEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEFMDIHN 693
+E + A+++ K GI+V ITGDN +AEAI RE+ +
Sbjct: 24 KESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL---------------------- 61
Query: 694 QKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGIA 753
L+ + P K E V+ L+ EVVA GDG+NDAPAL AD+G+A+G
Sbjct: 62 ---------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-- 109
Query: 754 GTEVAKEASDMVLADDNFGTIVAAV 778
+ D+VL D+ +VAA+
Sbjct: 110 -------SGDIVLIRDDLRDVVAAI 127
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/43 (88%), Positives = 42/43 (97%)
Query: 326 YYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKL 368
YYF+IAVALAVAAIPEGLPAVITTCLALGTR+MA+KNA+VR L
Sbjct: 6 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 32/158 (20%)
Query: 629 LRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEF 688
+ D PR ++ +E K G+++++++GD ++ + + +E+ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 689 MDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGV 748
+S P K I+ LK++G V M GDGVNDA AL LAD+ V
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 749 AMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYN 786
AMG G +++K +D++L ++ GT++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 32/158 (20%)
Query: 629 LRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEF 688
+ D PR ++ +E K G+++++++GD ++ + + +E+ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 689 MDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGV 748
+S P K I+ LK++G V M GDGVNDA AL LAD+ V
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 749 AMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYN 786
AMG G +++K +D++L ++ GT++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 32/158 (20%)
Query: 629 LRDPPREEVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEF 688
+ D PR ++ +E K G+++++++GD ++ + + +E+ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 689 MDIHNQKNYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGV 748
+S P K I+ LK++G V M GDGVNDA AL LAD+ V
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 749 AMGIAGTEVAKEASDMVLADDNFGTIVAAVGEGRSIYN 786
AMG G +++K +D++L ++ GT++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2VOY|E Chain E, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 30
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 111 TAFVEPLVIFLILIVNAIVGIWQESNAEKA 140
TAFVEP VI LILI NAIVG+WQE NAE A
Sbjct: 1 TAFVEPFVILLILIANAIVGVWQERNAENA 30
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 269 EEDTPLKKKLNQFGEVLTMIIGVICALVWLINVKY 303
++ TPL++KL++FGE L+ +I +IC VWLIN+ +
Sbjct: 2 QDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 36
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 42
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 58 YGYNELEKHEGTSIFQLILEQFNDTLVRI 86
YG+NEL EG S+++L++EQF D LVRI
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRI 29
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 525 NSSSGNKKLLVKGAVENLLERSSFVQLLDGSVVELDQYSRDLILQSLQEMSSTALRCLGF 584
N+S L++KGA E +L+R S + LL G LD+ +D + E+ R LGF
Sbjct: 115 NASEPKHLLVMKGAPERILDRCSSI-LLHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 173
Query: 585 AY----KDDLREFETYDGDEDHPAHQLLLNPTNYSSIESRLVFVGMVGLRDPP 633
+ + E +D DE N+ L FVG++ + DPP
Sbjct: 174 CHLLLPDEQFPEGFQFDTDE-----------VNFPV--DNLCFVGLISMIDPP 213
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 22/116 (18%)
Query: 636 EVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEFMDIHNQK 695
E R+ +E + G +V++I+G + E G EFM N+
Sbjct: 83 EARELVETLREKGFKVVLISGSFEEVLEPFKE----------------LGDEFM--ANRA 124
Query: 696 NYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMG 751
+ +DG R R K E ++ + DG ++AM GDG DA + AD+G+A+G
Sbjct: 125 IF--EDGKFQGIRLRFRDKGEFLKRFR-DGFILAM-GDGYADAKMFERADMGIAVG 176
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 654 ITGDNKNTAEAICREIGVFGAHEDISSQSITGKEFMDIHNQKNYLRQDGGLLFSRAE--- 710
+T DN N+ + +C +G+ ++S + GK+F +N K Y+ DGGL F+ +
Sbjct: 550 VTTDNGNSWK-VCTNLGMGAV---VASDRVNGKKFYAFYNGKFYISTDGGLTFTDTKAPQ 605
Query: 711 -PRHKQEIVRLLKEDGEV 727
P+ +I + ++G V
Sbjct: 606 LPKSVNKIKAVPGKEGHV 623
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 139 KALEALKEIQSEQATVTRDGKKIPSLSAKELVPGDIVELKVGDKVPADMRLLRLTSSTVR 198
+A++ L +Q++ A V RDGK+I ++ +E+ GDIV ++ G+K+P D ++ S
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEI-AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES---Y 56
Query: 199 VEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGMNTEIGKV 258
V++ ++GE V K+ K VF T G T G T + ++
Sbjct: 57 VDESMISGEPVPVLKS------------KGDEVFGATINNTGVLKIRATRVGGETLLAQI 104
Query: 259 HSQIHEA 265
+ +A
Sbjct: 105 VKLVEDA 111
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 726 EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGT 773
EV+A+ GDG ND +K A +GVAMG A V K A + L +D G
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGV 261
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 506 QRFATLEFDRDRKSMGVLVNSSSGNKKLLVKGAVENLLERSSFVQLLDGSVVELDQYSRD 565
Q+ + FD +R+ M V+V ++ + +L+ KGA++ +L S V+ +G +V LD D
Sbjct: 57 QKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVR-HNGEIVPLD----D 111
Query: 566 LILQSLQEMSST----ALRCLGFAYK 587
++L+ ++ ++ T LR + A K
Sbjct: 112 IMLRKIKRVTDTLNRQGLRVVAVATK 137
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 654 ITGDNKNTAEAICREIGVFGAHEDISSQSITGKEFMDIHNQKNYLRQDGGLLFSRAE--- 710
+T DN N+ + +C +G ++S + GK+F +N K Y+ DGGL F+ +
Sbjct: 550 VTTDNGNSWK-VCTNLGXGAV---VASDRVNGKKFYAFYNGKFYISTDGGLTFTDTKAPQ 605
Query: 711 -PRHKQEIVRLLKEDGEV 727
P+ +I + ++G V
Sbjct: 606 LPKSVNKIKAVPGKEGHV 623
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 732 GDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFG 772
GDG ND P LK A IGVAMG A +V A + DN G
Sbjct: 217 GDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSG 257
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 726 EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFGT 773
EV+A+ GDG ND +K A GVA G A V K A + L +D G
Sbjct: 215 EVIAI-GDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDGV 261
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 22/116 (18%)
Query: 636 EVRQAIEDCKAAGIRVMVITGDNKNTAEAICREIGVFGAHEDISSQSITGKEFMDIHNQK 695
E R+ +E + G +V++I+G + E KE D
Sbjct: 83 EARELVETLREKGFKVVLISGSFEEVLEPF--------------------KELGDEFXAN 122
Query: 696 NYLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMG 751
+ +DG R R K E ++ + DG ++A GDG DA + AD G+A+G
Sbjct: 123 RAIFEDGKFQGIRLRFRDKGEFLKRFR-DGFILA-XGDGYADAKXFERADXGIAVG 176
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 780 EGRSIYNNMKAFIRY 794
EGR+IYNNMK FIRY
Sbjct: 1 EGRAIYNNMKQFIRY 15
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 139 KALEALKEIQSEQAT-VTRDGKKIPSLSAKELVP------GDIVELKVGDKVPADMRLLR 191
+AL L +Q+ +AT VT D I L ++E V GDI+++ G K P D R++
Sbjct: 7 EALAKLISLQATEATIVTLDSDNI--LLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIE 64
Query: 192 LTSSTVRVEQGSLTGESEAVSKTVKTVPENSDIQGKKCMVFAGTTVVNGTCTCLVTNTGM 251
S V++ +TGE+ V+K P ++ V AG+ NG+ T+ G
Sbjct: 65 GHS---MVDESLITGEAMPVAKK----PGST--------VIAGSINQNGSLLICATHVGA 109
Query: 252 NTEIGKVHSQIHEA 265
+T + ++ + EA
Sbjct: 110 DTTLSQIVKLVEEA 123
>pdb|2HQB|A Chain A, Crystal Structure Of A Transcriptional Activator Of Comk
Gene From Bacillus Halodurans
Length = 296
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 129 VGIWQESNAEKALEALKEIQSEQATV---TRDGKKIPSLSAKELVPGDIVELKVGDKVPA 185
VG W ++A+KALE +E+Q EQ V DG +P + A + GD VGD+ A
Sbjct: 161 VGEW--TDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIK-DQGDFAIGYVGDQ--A 215
Query: 186 DMRLLRLTSSTVR 198
D+ + +STV+
Sbjct: 216 DLGGSTILTSTVQ 228
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 716 EIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLA 767
EI+R E GDG ND L+ A IGVAMG A +V K A+D V A
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTA 244
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 716 EIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLA 767
EI+R E GDG ND L+ A IGVAMG A +V K A+D V A
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTA 244
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 108 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 160
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 161 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 215
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 216 RYQGIVKALKEGDIQTAQKLQTECN 240
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
Length = 303
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 115 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 167
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 168 VGALXQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 222
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 223 RYQGIVKALKEGDIQTAQKLQTECN 247
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 130 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 182
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 183 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 237
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 238 RYQGIVKALKEGDIQTAQKLQTECN 262
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 115 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 167
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 168 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 222
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 223 RYQGIVKALKEGDIQTAQKLQTECN 247
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 108 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 160
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N ++ A G AG G+TYN
Sbjct: 161 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDEIFASGLLAGADGGI---GSTYNIMGW 215
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 216 RYQGIVKALKEGDIQTAQKLQTECN 240
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 533 LLVKGAVENLLERSSFVQLLDGSVVELDQYSRDLILQSLQEMSSTALRCLGF 584
L++KGA E +L+R S + L+ G + LD+ +D + E+ R LGF
Sbjct: 120 LVMKGAPERILDRCSSI-LVQGKEIPLDKEMQDAFQNAYLELGGLGERVLGF 170
>pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|B Chain B, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|C Chain C, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|D Chain D, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
Length = 303
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 115 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 167
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N + A G AG G+TYN
Sbjct: 168 VGALXQTSGDLYQMEQIRREHPDLVLYN--GYDNIFASGLLAGADGGI---GSTYNIMGW 222
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 223 RYQGIVKALKEGDIQTAQKLQTECN 247
>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WPB|A Chain A, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|B Chain B, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|C Chain C, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|D Chain D, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2XFW|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
Length = 304
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 115 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 167
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N + A G AG G+TYN
Sbjct: 168 VGALXQTSGDLYQMEQIRREHPDLVLYN--GYDNIFASGLLAGADGGI---GSTYNIMGW 222
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 223 RYQGIVKALKEGDIQTAQKLQTECN 247
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 314 PRNFKFSFEK-CTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMA--QKNALVRKLPS 370
P + FSFE+ C +Y A+ +GLP V+ AL K+ Q N LV LP
Sbjct: 115 PFYYPFSFEEHCDHY------RAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV-TLPG 167
Query: 371 VETLGCTT-------VICSDKTGTLTTNQMAVTKLVAVGSRAGTLRSFNVQGTTYNPSDG 423
V L T+ I + + N + A G AG G+TYN
Sbjct: 168 VGALKQTSGDLYQMEQIRREHPDLVLYN--GYDNIFASGLLAGADGGI---GSTYNIMGW 222
Query: 424 RIEGWPVGRMDANLQTIAKISAVCN 448
R +G + ++QT K+ CN
Sbjct: 223 RYQGIVKALKEGDIQTAQKLQTECN 247
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 715 QEIVRLLKEDG---EVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNF 771
Q + RL K+ E A GD +ND L+ A GVA G A ++ A + L +D
Sbjct: 219 QALKRLAKQLNIPLEETAAVGDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLTNDEH 278
Query: 772 G 772
G
Sbjct: 279 G 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,490,464
Number of Sequences: 62578
Number of extensions: 981427
Number of successful extensions: 2589
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2423
Number of HSP's gapped (non-prelim): 100
length of query: 817
length of database: 14,973,337
effective HSP length: 107
effective length of query: 710
effective length of database: 8,277,491
effective search space: 5877018610
effective search space used: 5877018610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)