Query         003469
Match_columns 817
No_of_seqs    420 out of 3137
Neff          8.5 
Searched_HMMs 13730
Date          Tue Mar 26 02:19:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003469.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003469hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r6va_ c.41.1.1 (A:) Fervidol 100.0 4.5E-53 3.2E-57  497.5  26.5  336   86-678    53-441 (671)
  2 d1v6ca_ c.41.1.1 (A:) Alkaline 100.0 2.6E-49 1.9E-53  445.8  26.8  372  152-675    19-426 (435)
  3 d1dbia_ c.41.1.1 (A:) Thermost 100.0 6.1E-49 4.5E-53  415.5  21.2  264  135-675    16-279 (280)
  4 d1thma_ c.41.1.1 (A:) Thermita 100.0 2.2E-47 1.6E-51  404.1  22.4  257  142-675    22-278 (279)
  5 d1r0re_ c.41.1.1 (E:) Subtilis 100.0 1.2E-47 9.1E-52  404.9  18.4  256  142-675    15-274 (274)
  6 d1to2e_ c.41.1.1 (E:) Subtilis 100.0 2.1E-47 1.5E-51  404.7  18.9  258  142-676    15-276 (281)
  7 d1gcia_ c.41.1.1 (A:) Subtilis 100.0 5.5E-47   4E-51  398.7  20.9  255  142-675    15-269 (269)
  8 d2ixta1 c.41.1.1 (A:1-309) Sph 100.0 5.7E-43 4.2E-47  375.8  25.5  287  141-670    16-309 (309)
  9 d2pwaa1 c.41.1.1 (A:1-279) Pro 100.0 1.3E-42 9.7E-47  367.0  17.9  224  152-635    28-259 (279)
 10 d1wmda2 c.41.1.1 (A:1-318) Alk 100.0 2.9E-40 2.1E-44  356.0  24.8  289  151-675    18-317 (318)
 11 d1p8ja2 c.41.1.1 (A:109-442) F 100.0   1E-38 7.4E-43  346.2  15.6  287  142-675    28-328 (334)
 12 d2id4a2 c.41.1.1 (A:122-460) K 100.0 3.5E-38 2.5E-42  342.8  16.8  289  142-676    37-334 (339)
 13 d1t1ga_ c.41.1.2 (A:) Serine-c 100.0 3.9E-31 2.8E-35  288.6   4.8  164  151-367    20-194 (357)
 14 d1ga6a_ c.41.1.2 (A:) Serine-c  99.9 1.2E-29 8.9E-34  278.1   4.8  125  233-367    66-204 (369)
 15 d1scjb_ d.58.3.2 (B:) Subtilis  98.4 3.6E-07 2.6E-11   72.1   9.0   43   85-128    28-70  (71)
 16 d1v5ib1 d.58.3.2 (B:1-72) Prot  98.4 5.6E-07 4.1E-11   71.2   8.7   37   88-124    32-71  (72)
 17 d1w8oa1 b.1.18.2 (A:403-505) S  95.9   0.028   2E-06   46.6  10.7   78  721-801     7-87  (103)
 18 d1de4c2 c.8.4.1 (C:190-382) Tr  91.6   0.077 5.6E-06   48.8   4.8   40  430-475    59-98  (193)
 19 d3bi1a2 c.8.4.1 (A:118-350) Gl  89.4    0.15 1.1E-05   48.4   4.7   38  430-473    77-114 (233)
 20 d2vzsa2 b.1.4.1 (A:778-899) Ex  70.9      18  0.0013   29.7  10.7   76  732-809    38-120 (122)
 21 d1ex0a2 b.1.5.1 (A:516-627) Tr  69.9       5 0.00036   32.8   6.9   52  735-786    19-78  (112)
 22 d1rowa_ b.1.11.2 (A:) SSP-19 {  66.8      10 0.00076   30.5   8.1   47  737-785    18-65  (107)
 23 d1grwa_ b.1.11.2 (A:) Major sp  63.4      11 0.00077   31.3   7.8   51  732-784    23-74  (124)
 24 d1m1sa_ b.1.11.2 (A:) WR4 {Nem  63.0      13 0.00093   30.0   8.1   49  737-787    21-70  (109)
 25 d1g0da2 b.1.5.1 (A:472-583) Tr  57.0      10 0.00076   30.8   6.4   52  735-786    18-77  (112)
 26 d1vjja2 b.1.5.1 (A:479-593) Tr  56.0      16  0.0011   29.7   7.5   52  735-786    21-80  (115)
 27 d2q3za2 b.1.5.1 (A:472-585) Tr  45.9      23  0.0017   28.6   6.9   52  735-786    19-79  (114)
 28 d1v6ca_ c.41.1.1 (A:) Alkaline  42.9      24  0.0018   35.7   8.3   29  538-579   183-211 (435)
 29 d1exha_ b.2.2.1 (A:) Exo-1,4-b  40.1      50  0.0036   26.3   8.0   28  734-761    21-50  (110)
 30 d1wica_ b.1.11.2 (A:) MSP doma  38.7      34  0.0025   29.1   7.2   47  737-785    40-87  (152)
 31 d2cj3a1 b.6.1.1 (A:1-105) Plas  37.9      10 0.00074   30.1   3.3   31  747-778     1-31  (105)
 32 d2q5ba1 b.6.1.1 (A:1-105) Plas  34.2      12 0.00086   29.7   3.1   32  747-779     1-32  (105)
 33 d3es6b1 b.1.18.23 (B:1-118) Pr  30.8      27  0.0019   28.4   4.8   65  719-785    11-77  (118)
 34 d1k78a2 a.4.1.5 (A:82-142) Pax  25.6      37  0.0027   23.9   3.9   32  600-631     9-40  (61)
 35 d2co7b1 b.1.11.1 (B:8-135) Per  24.9      37  0.0027   27.9   4.8   48  736-784    23-75  (128)
 36 d2j2za1 b.1.11.1 (A:1-124) Pil  24.1 1.6E+02   0.012   23.4  11.9   66  735-800    17-92  (124)
 37 d4ubpb_ b.85.3.1 (B:) Urease,   21.7      41   0.003   27.2   4.1   48  733-781    21-84  (122)
 38 d1tyeb1 b.1.15.1 (B:58-106,B:3  21.6      57  0.0042   27.0   5.3   25  760-784    23-49  (135)
 39 d1mzga_ d.224.1.1 (A:) SufE (Y  21.3      32  0.0023   29.0   3.6   34  593-627    65-98  (144)
 40 d1kyfa1 b.1.10.1 (A:692-824) A  20.5 1.3E+02  0.0097   24.4   7.5   77  735-811    45-130 (133)

No 1  
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}
Probab=100.00  E-value=4.5e-53  Score=497.52  Aligned_cols=336  Identities=24%  Similarity=0.286  Sum_probs=249.3

Q ss_pred             ceEEEEeccccceEEEEcCHHHH----HHH--HcCCCceEEEccceeccccC----CCCcc-------------------
Q 003469           86 YKKLYSYKHLINGFAVHITPDQA----EIL--QRAPGVKSVERDWKVRRLTT----HTPEF-------------------  136 (817)
Q Consensus        86 ~~~~~~y~~~~ng~sv~~~~~~~----~~L--~~~p~V~~V~~~~~~~~~~~----~s~~~-------------------  136 (817)
                      .+++.++. .++.+.++++...+    +.+  ..+|+|++|||+...++...    ..+..                   
T Consensus        53 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (671)
T d1r6va_          53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL  131 (671)
T ss_dssp             CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred             CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccc
Confidence            34455544 56777888775433    233  25799999999865543211    00000                   


Q ss_pred             ---------cCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCcee
Q 003469          137 ---------LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKII  207 (817)
Q Consensus       137 ---------~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~  207 (817)
                               ++.+...|.     .++|+||+|||||||||++||+|.++                             ++
T Consensus       132 ~~~~w~l~~i~~~~a~~~-----~~tG~gV~VaViDtGvd~~Hpdl~~~-----------------------------~~  177 (671)
T d1r6va_         132 SNELWGLEAIGVTQQLWE-----EASGTNIIVAVVDTGVDGTHPDLEGQ-----------------------------VI  177 (671)
T ss_dssp             GGGCHHHHHTTCCHHHHH-----HCSCTTCEEEEEESCCBTTSGGGTTT-----------------------------BC
T ss_pred             cccCcChhhcCccHHHHh-----cCCCCCCEEEEEcCCcCCCChhhcCC-----------------------------cc
Confidence                     111111233     37999999999999999999999976                             22


Q ss_pred             eeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecC------
Q 003469          208 GAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL------  281 (817)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~------  281 (817)
                      .++++..+.       ......++.|++||||||||||||+.+.         .++.||||+|+|+++|++++.      
T Consensus       178 ~~~~~~~~~-------~~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~  241 (671)
T d1r6va_         178 AGYRPAFDE-------ELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGN  241 (671)
T ss_dssp             CEEEGGGTE-------EECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTT
T ss_pred             cCccccccC-------CCCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCC
Confidence            223332110       0011234567889999999999997531         246899999999999999642      


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcE
Q 003469          282 FGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWI  360 (817)
Q Consensus       282 ~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~v  360 (817)
                      +....+.+++||+||+++|++|||||||+..        ....+..+++.+.++|+++|+||||++.+. ...|+..|++
T Consensus       242 g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~--------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~v  313 (671)
T d1r6va_         242 GYVGDDYVAAGIIWATDHGAKVMNHSWGGWG--------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGV  313 (671)
T ss_dssp             SBCCHHHHHHHHHHHHHTTCSEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTC
T ss_pred             CcccHHHHHHHHHHHHhCCCcEEeccccccc--------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCce
Confidence            2345677999999999999999999999742        345788899999999999999999998764 4567889999


Q ss_pred             EEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEe
Q 003469          361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCG  440 (817)
Q Consensus       361 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~  440 (817)
                      |+|||++....                                                                     
T Consensus       314 i~Vga~~~~~~---------------------------------------------------------------------  324 (671)
T d1r6va_         314 IQVAALDYYGG---------------------------------------------------------------------  324 (671)
T ss_dssp             EEEEEEEEETT---------------------------------------------------------------------
T ss_pred             EEEEEecCCCC---------------------------------------------------------------------
Confidence            99999642110                                                                     


Q ss_pred             cccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEee
Q 003469          441 YSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSF  520 (817)
Q Consensus       441 ~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~  520 (817)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (671)
T d1r6va_         325 --------------------------------------------------------------------------------  324 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCC--------CCCccCCce
Q 003469          521 KGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTD--------EANFVGEGF  592 (817)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y  592 (817)
                                       ...++.||+|||..             ||+|||++|+|+++.....        .....++.|
T Consensus       325 -----------------~~~~a~fS~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y  374 (671)
T d1r6va_         325 -----------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY  374 (671)
T ss_dssp             -----------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCE
T ss_pred             -----------------cceeeeccCCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCCCee
Confidence                             01678999999976             9999999999998653321        112246789


Q ss_pred             EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccc
Q 003469          593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRA  672 (817)
Q Consensus       593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~  672 (817)
                      ..++|||||||||||++|||+|++|+|++.|||++|++||++++..+                   .+..||||+||+.+
T Consensus       375 ~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-------------------~~~~~G~G~vna~~  435 (671)
T d1r6va_         375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------------------WDHDTGYGLVKLDA  435 (671)
T ss_dssp             EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-------------------CBTTTBTCBCCHHH
T ss_pred             eeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-------------------CCCCcccChhCHHH
Confidence            99999999999999999999999999999999999999999876543                   23589999999999


Q ss_pred             ccCCCe
Q 003469          673 ALDPGL  678 (817)
Q Consensus       673 Al~~~l  678 (817)
                      ||+..+
T Consensus       436 Av~~~~  441 (671)
T d1r6va_         436 ALQGPL  441 (671)
T ss_dssp             HHHCCC
T ss_pred             HhhCcC
Confidence            997544


No 2  
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=100.00  E-value=2.6e-49  Score=445.80  Aligned_cols=372  Identities=22%  Similarity=0.281  Sum_probs=232.6

Q ss_pred             CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469          152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP  231 (817)
Q Consensus       152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~  231 (817)
                      .+|+||+|||||||||++||+|.++                             ++.+++|..          ..+...+
T Consensus        19 ~~G~gv~VaviDtGid~~Hp~~~~~-----------------------------~~~~~~~~~----------~~~~~~~   59 (435)
T d1v6ca_          19 SQAGNRTICIIDSGYDRSHNDLNAN-----------------------------NVTGTNNSG----------TGNWYQP   59 (435)
T ss_dssp             TTGGGCEEEEEESCCCTTSTTTTTS-----------------------------EEEECCCTT----------SCCTTCC
T ss_pred             cCCCCcEEEEEcCCCCCCChhhccC-----------------------------eeeeeccCC----------CCCCCCC
Confidence            4899999999999999999999875                             233333321          1123457


Q ss_pred             CCCCCCCccchhhhccCCCccccccccCccceeeccC--CCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cCCcEEEecC
Q 003469          232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAP--RARIAVYKALYRLFGGFVADVVAAIDQAVH-DGVDILSLSV  308 (817)
Q Consensus       232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP--~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g~dVIn~Sl  308 (817)
                      .|++||||||||||||+...         ..+.||||  +++|+.+|++.....++..++++||+++++ +|++|||+||
T Consensus        60 ~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~  130 (435)
T d1v6ca_          60 GNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL  130 (435)
T ss_dssp             CSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred             CCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEeccc
Confidence            78999999999999997532         14689999  899999999988666777789999999996 5999999999


Q ss_pred             CCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469          309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG  388 (817)
Q Consensus       309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~  388 (817)
                      |....        ...+..+++++.++|+++|+||||+|....++++..+++|+|||++.+.....+...+....+...+
T Consensus       131 g~~~~--------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG  202 (435)
T d1v6ca_         131 GGSGS--------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG  202 (435)
T ss_dssp             CBSCC--------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEEC
T ss_pred             CCCCC--------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecc
Confidence            97532        3466788899999999999999999999888999999999999998765433222222111111100


Q ss_pred             --cC-CCCCCCceEEEEEc-ccccccccc---cccCCCCCCCc-------------------cccccccccccEEEEecc
Q 003469          389 --LS-PATHGNRTFTLVAA-NDVLLDSSV---MKYSASDCQRP-------------------EVLNKNLVEGNILLCGYS  442 (817)
Q Consensus       389 --~~-~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~c~~~-------------------~~~~~~~~~gki~~~~~~  442 (817)
                        +. ........+..... .........   .......|...                   ..+......+++.++.+.
T Consensus       203 ~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (435)
T d1v6ca_         203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV  282 (435)
T ss_dssp             SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred             cceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence              00 00000000000000 000000000   00000011000                   011112233344433332


Q ss_pred             cccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeee
Q 003469          443 FNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKG  522 (817)
Q Consensus       443 ~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~  522 (817)
                      ... ............+...++.+++.+                                                    
T Consensus       283 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  309 (435)
T d1v6ca_         283 GNQ-GSSYPEINSTKACKTAGAKGIIVY----------------------------------------------------  309 (435)
T ss_dssp             SCS-SSSCTHHHHHHHHHHTTCSEEEEE----------------------------------------------------
T ss_pred             CCc-cccceeeeeceeecccCCcceEEe----------------------------------------------------
Confidence            110 011112222223333333333322                                                    


Q ss_pred             eeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCC-----C--CCCCCccCCceEee
Q 003469          523 TGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN-----G--TDEANFVGEGFALI  595 (817)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~-----~--~~~~~~~~~~y~~~  595 (817)
                                           +++.+|....   ......||||.+||..|.++....     .  .......++.|..|
T Consensus       310 ---------------------~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~  365 (435)
T d1v6ca_         310 ---------------------SNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYY  365 (435)
T ss_dssp             ---------------------CCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEE
T ss_pred             ---------------------ccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEE
Confidence                                 2333332211   011368999999998886543110     0  00011234689999


Q ss_pred             cCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          596 SGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       596 sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      ||||||||||||++|||||+||+|+++|||++||+||+++..                   ++++++||+|+||+.+|++
T Consensus       366 sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-------------------~~~~~~~G~G~vn~~~A~~  426 (435)
T d1v6ca_         366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV-------------------AGRDNQTGYGMINAVAAKA  426 (435)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-------------------SSCBTTTBTCBCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-------------------CCCCCCcccceecHHHHHH
Confidence            999999999999999999999999999999999999998743                   2455799999999999953


No 3  
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}
Probab=100.00  E-value=6.1e-49  Score=415.53  Aligned_cols=264  Identities=29%  Similarity=0.413  Sum_probs=213.4

Q ss_pred             cccCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhH
Q 003469          135 EFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAE  214 (817)
Q Consensus       135 ~~~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~  214 (817)
                      +.++++ .+|..    +++|+||+|||||||||++||+|.++                             ++..++|..
T Consensus        16 ~~i~~~-~aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------------~~~~~~~~~   61 (280)
T d1dbia_          16 QNTYTD-YAWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYDFVD   61 (280)
T ss_dssp             GGGTHH-HHTTT----CCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEETTT
T ss_pred             hhCCHH-HHHhc----cCCCCCeEEEEEccCcCCCChhhcCC-----------------------------eeecccccC
Confidence            334433 68887    68999999999999999999999964                             455555543


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHH
Q 003469          215 AAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAID  294 (817)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~  294 (817)
                      .            ...+.|.++|||||||+|+|....        ...+.||||+|+|+.+|+++..+.+..+++++||+
T Consensus        62 ~------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~  121 (280)
T d1dbia_          62 N------------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAII  121 (280)
T ss_dssp             T------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHH
T ss_pred             C------------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHH
Confidence            1            234668899999999999997532        23478999999999999998877788999999999


Q ss_pred             HHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceee
Q 003469          295 QAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN  374 (817)
Q Consensus       295 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~  374 (817)
                      |++++|++|||||||...        ..+....++..+.++|+++|+||||+|......++..+++|+|||.+.      
T Consensus       122 ~a~~~g~~iin~S~g~~~--------~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------  187 (280)
T d1dbia_         122 YAADSGAEVINLSLGCDC--------HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------  187 (280)
T ss_dssp             HHHHTTCSEEEECCSSCC--------CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT------
T ss_pred             HHHHcCCcEeeccccccc--------cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC------
Confidence            999999999999999743        234566788899999999999999999887778888999999998531      


Q ss_pred             EEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHH
Q 003469          375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK  454 (817)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~  454 (817)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (280)
T d1dbia_         188 --------------------------------------------------------------------------------  187 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccc
Q 003469          455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL  534 (817)
Q Consensus       455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (817)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (280)
T d1dbia_         188 --------------------------------------------------------------------------------  187 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH
Q 003469          535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ  614 (817)
Q Consensus       535 ~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q  614 (817)
                         .+.++.||++||..             |++|||.+|++..          .+..|..++|||||||+|||++|||+|
T Consensus       188 ---~~~~a~~S~~g~~~-------------d~~apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~All~~  241 (280)
T d1dbia_         188 ---YDRLASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS  241 (280)
T ss_dssp             ---TSCBCTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCcCCcCCCCCcc-------------cccCCccceeccc----------cCcceeccCCccccchHHHHHHHHHhC
Confidence               12678999999876             8999999999987          456899999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          615 KHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       615 ~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      .  .+++.+||++|++||+++...                     ...||+|+||+.+||+
T Consensus       242 ~--~~t~~~v~~~L~~tA~~~~~~---------------------~~~~G~G~ln~~~Al~  279 (280)
T d1dbia_         242 Q--GRNNIEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT  279 (280)
T ss_dssp             T--TCCHHHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred             C--CcCHHHHHHHHHHhCcCCCCC---------------------CCcCCCCeEcHHHHcC
Confidence            5  458999999999999886432                     2479999999999985


No 4  
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=100.00  E-value=2.2e-47  Score=404.10  Aligned_cols=257  Identities=30%  Similarity=0.471  Sum_probs=218.7

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..     .+|+||+|||||||||++||+|.++                             ++..++|.++      
T Consensus        22 ~aw~~-----~tG~Gv~VaViDsGi~~~H~~~~~~-----------------------------~~~~~~~~~~------   61 (279)
T d1thma_          22 QAWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVDN------   61 (279)
T ss_dssp             HHHTT-----CCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTTT------
T ss_pred             HHHhc-----cCCCCcEEEEEcCCCCCCChhhcCC-----------------------------eecccccccc------
Confidence            67876     3899999999999999999999964                             5556666432      


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV  301 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~  301 (817)
                            +..+.|..+|||||||+|++....+        ..+.||||+|+|+.+|++...+.+..+++++||+++.+.++
T Consensus        62 ------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~  127 (279)
T d1thma_          62 ------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA  127 (279)
T ss_dssp             ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred             ------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCC
Confidence                  2456788999999999999975322        24689999999999999988777888999999999999999


Q ss_pred             cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469          302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG  381 (817)
Q Consensus       302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~  381 (817)
                      +|||||||...        ....+..++..+.++|+++|+|+||+|......+...+++|+|||++.             
T Consensus       128 ~i~n~S~G~~~--------~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------------  186 (279)
T d1thma_         128 KVISLSLGGTV--------GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------  186 (279)
T ss_dssp             SEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred             ceeccccCccc--------cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-------------
Confidence            99999999743        334677888899999999999999999988888888999999998531             


Q ss_pred             cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469          382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS  461 (817)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~  461 (817)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T d1thma_         187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469          462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV  541 (817)
Q Consensus       462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (817)
                                                                                                  .+.+
T Consensus       187 ----------------------------------------------------------------------------~~~~  190 (279)
T d1thma_         187 ----------------------------------------------------------------------------NDNK  190 (279)
T ss_dssp             ----------------------------------------------------------------------------TSCB
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        1267


Q ss_pred             ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469          542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP  621 (817)
Q Consensus       542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~  621 (817)
                      +.||++|++.             ||+|||.+|+++.          .++.|..++|||||||||||++|||+|.+|  ++
T Consensus       191 ~~~S~~G~~~-------------di~Apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~  245 (279)
T d1thma_         191 SSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLLASQGR--SA  245 (279)
T ss_dssp             CTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHTTTC--CH
T ss_pred             ccccCCCceE-------------EEeeeeecccccc----------CcccccccCCcchhhHHHHHHHHHHhcCCc--CH
Confidence            8999999986             9999999999998          456899999999999999999999999766  79


Q ss_pred             HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      .+||++|++||+++..                     ....||+|+||+.+||+
T Consensus       246 ~~i~~~L~~tA~~~~g---------------------~~~~~G~G~vn~~~Av~  278 (279)
T d1thma_         246 SNIRAAIENTADKISG---------------------TGTYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             HHHHHHHHHTCBCCTT---------------------BTTTBSSEECCHHHHHH
T ss_pred             HHHHHHHHhhCccCCC---------------------CCCcceeeeEcHHHhhC
Confidence            9999999999988642                     22479999999999975


No 5  
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}
Probab=100.00  E-value=1.2e-47  Score=404.90  Aligned_cols=256  Identities=30%  Similarity=0.484  Sum_probs=211.7

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..    +++|+||+|||||||||++||+|+.                               ..+++|..+      
T Consensus        15 ~~~~~----g~tG~gv~VaViDtGv~~~Hp~l~~-------------------------------~~~~~~~~~------   53 (274)
T d1r0re_          15 KVQAQ----GFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG------   53 (274)
T ss_dssp             HHHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT------
T ss_pred             HHHHc----CCCCCCeEEEEECCCCCCCChhhcc-------------------------------cCCccccCC------
Confidence            45666    7999999999999999999999963                               233344321      


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV  301 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~  301 (817)
                            ...+.|.++|||||||||++....         ..+.|+||+|+|+.+|+++..+.+..+++++|++++.++++
T Consensus        54 ------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~  118 (274)
T d1r0re_          54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM  118 (274)
T ss_dssp             ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred             ------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence                  234557889999999999987532         13689999999999999988766788999999999999999


Q ss_pred             cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC----CccCCCCcEEEEeeeecCcceeeEEE
Q 003469          302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK----TLVSYSPWITTVAAAIDDRRYKNHLN  377 (817)
Q Consensus       302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~----~~~~~~~~vitVgA~~~~~~~~~~~~  377 (817)
                      +|||+|||....        .........++.++++++|+||||+|....    ..++..+++|+|||++.         
T Consensus       119 ~i~n~S~~~~~~--------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~---------  181 (274)
T d1r0re_         119 DVINMSLGGASG--------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------  181 (274)
T ss_dssp             SEEEECEEBSSC--------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred             ceeccccccccc--------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------
Confidence            999999997432        345667778899999999999999986532    34567788999988531         


Q ss_pred             eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469          378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE  457 (817)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~  457 (817)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (274)
T d1r0re_         182 --------------------------------------------------------------------------------  181 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469          458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS  537 (817)
Q Consensus       458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (817)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (274)
T d1r0re_         182 --------------------------------------------------------------------------------  181 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469          538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP  617 (817)
Q Consensus       538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p  617 (817)
                      .+.++.||++||.+             ||+|||++|+++.          ..+.|..++|||||||+|||++|||+|++|
T Consensus       182 ~~~~~~~s~~g~~~-------------di~APG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~~All~~~~p  238 (274)
T d1r0re_         182 NSNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAALILSKHP  238 (274)
T ss_dssp             TSCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred             CCCcccccCCCCCE-------------EEEecCCCccccc----------CCCCeEeecCCchhHHHHHHHHHHHHHHCC
Confidence            12678899999855             9999999999997          456899999999999999999999999999


Q ss_pred             CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      +|++++||.+|++||+++..                      .+.||+|+||+.+|++
T Consensus       239 ~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         239 NLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             TCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred             CCCHHHHHHHHHhhCccCCC----------------------CCceEcCeecHHHhcC
Confidence            99999999999999987632                      2479999999999985


No 6  
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}
Probab=100.00  E-value=2.1e-47  Score=404.68  Aligned_cols=258  Identities=32%  Similarity=0.481  Sum_probs=212.5

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..    +++|+||+|||||||||++||+|+..                               ..++|...      
T Consensus        15 ~aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~-------------------------------~~~~~~~~------   53 (281)
T d1to2e_          15 ALHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------------GGASMVPS------   53 (281)
T ss_dssp             HHHHH----TCSCTTCEEEEEESCCCTTCTTCCEE-------------------------------EEEECCTT------
T ss_pred             HHHHC----CCCCCCeEEEEECCCCCCCChhhhhc-------------------------------CCccccCC------
Confidence            57765    79999999999999999999999743                               12222111      


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV  301 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~  301 (817)
                           +.....+.++|||||||||+|....         ....||||+|+|+.+|++..++.+..+++++||+|+++.++
T Consensus        54 -----~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~  119 (281)
T d1to2e_          54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM  119 (281)
T ss_dssp             -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred             -----CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccc
Confidence                 1112234679999999999997432         13589999999999999988766788899999999999999


Q ss_pred             cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC----CCccCCCCcEEEEeeeecCcceeeEEE
Q 003469          302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP----KTLVSYSPWITTVAAAIDDRRYKNHLN  377 (817)
Q Consensus       302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~  377 (817)
                      +|||+|||...        ....+..+++.+.++|+++|+||||+|...    ...++..+++|+|||++.         
T Consensus       120 ~v~n~S~g~~~--------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~---------  182 (281)
T d1to2e_         120 DVINMSLGGPS--------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS---------  182 (281)
T ss_dssp             SEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred             cccccccCCCc--------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC---------
Confidence            99999999742        345688899999999999999999998753    234567888999988531         


Q ss_pred             eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469          378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE  457 (817)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~  457 (817)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T d1to2e_         183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469          458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS  537 (817)
Q Consensus       458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (817)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T d1to2e_         183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469          538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP  617 (817)
Q Consensus       538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p  617 (817)
                      .+.++.||++||..             |++|||.+|.++.          .++.|..++|||||||+|||++|||+|++|
T Consensus       183 ~~~~~~~S~~G~~~-------------d~~apG~~i~s~~----------~~~~~~~~~GTS~Aap~vaG~~All~~~~p  239 (281)
T d1to2e_         183 SNQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAALILSKHP  239 (281)
T ss_dssp             TSCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred             CCCCCcccCCCCCc-------------cccCCCCCceeec----------CCCeeEcccCcchhHHHHHHHHHHHHHHCC
Confidence            12678899999976             8999999999997          456899999999999999999999999999


Q ss_pred             CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469          618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP  676 (817)
Q Consensus       618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  676 (817)
                      +|++++||++|++||+++..                      ...||+|+||+.+|++.
T Consensus       240 ~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ld~~~A~~~  276 (281)
T d1to2e_         240 NWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             TCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred             CCCHHHHHHHHHhhCccCCC----------------------CCCcccCcccHHHHHhh
Confidence            99999999999999998642                      13689999999999984


No 7  
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Probab=100.00  E-value=5.5e-47  Score=398.66  Aligned_cols=255  Identities=34%  Similarity=0.496  Sum_probs=215.1

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..    +++|+||+||||||||| +||+|...                               ..++|..       
T Consensus        15 ~aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~-------------------------------~~~~~~~-------   51 (269)
T d1gcia_          15 AAHNR----GLTGSGVKVAVLDTGIS-THPDLNIR-------------------------------GGASFVP-------   51 (269)
T ss_dssp             HHHHT----TCSCTTCEEEEEESCCC-CCTTCCEE-------------------------------EEEECST-------
T ss_pred             HHHhC----CCCCCCeEEEEECCCCC-CCcccCcc-------------------------------ccccccC-------
Confidence            57766    79999999999999998 89999743                               2223322       


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV  301 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~  301 (817)
                           ....+.|.++|||||||||++....         ....|+||+|+|+.+|++...+.+...++.+|++++...++
T Consensus        52 -----~~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~  117 (269)
T d1gcia_          52 -----GEPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM  117 (269)
T ss_dssp             -----TCCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred             -----CCCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccc
Confidence                 1234567889999999999987532         24579999999999999988777788899999999999999


Q ss_pred             cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469          302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG  381 (817)
Q Consensus       302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~  381 (817)
                      ++||+|||....        ......++..+.++|++||+||||+|.....+|+..+++|+||+++.+            
T Consensus       118 ~~in~s~g~~~~--------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------  177 (269)
T d1gcia_         118 HVANLSLGSPSP--------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------  177 (269)
T ss_dssp             SEEEECCCBSSC--------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------------
T ss_pred             cccccccccccc--------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC------------
Confidence            999999997432        345667888899999999999999998888888889999999985311            


Q ss_pred             cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469          382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS  461 (817)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~  461 (817)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (269)
T d1gcia_         178 --------------------------------------------------------------------------------  177 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469          462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV  541 (817)
Q Consensus       462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (817)
                                                                                                   +.+
T Consensus       178 -----------------------------------------------------------------------------~~~  180 (269)
T d1gcia_         178 -----------------------------------------------------------------------------NNR  180 (269)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         267


Q ss_pred             ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469          542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP  621 (817)
Q Consensus       542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~  621 (817)
                      +.||++||..             ||+|||.++.++.          .+..|..++|||||||+|||++|||+|++|+|++
T Consensus       181 ~~~S~~G~~~-------------di~Apg~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~  237 (269)
T d1gcia_         181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN  237 (269)
T ss_dssp             CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred             ccccCCCCCc-------------eEEEeeecceecc----------CCCceEecCCcchHHHHHHHHHHHHHHHCCCCCH
Confidence            8899999876             9999999999987          4568999999999999999999999999999999


Q ss_pred             HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      ++||.+|++||+++..                      ...||+|+||+++|++
T Consensus       238 ~~i~~~L~~tA~~~g~----------------------~~~~G~G~ln~~~Avk  269 (269)
T d1gcia_         238 VQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred             HHHHHHHHhhCccCCC----------------------CCCcccCeEcHHHhcC
Confidence            9999999999988642                      1368999999999985


No 8  
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=100.00  E-value=5.7e-43  Score=375.78  Aligned_cols=287  Identities=26%  Similarity=0.371  Sum_probs=216.3

Q ss_pred             CCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhc
Q 003469          141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAAR  220 (817)
Q Consensus       141 ~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~  220 (817)
                      +.+|..    +++|+||+|||||||||++||+|.++                             +...++|....    
T Consensus        16 ~~aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------------~~~~~~~~~~~----   58 (309)
T d2ixta1          16 NDTLTS----TTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT----   58 (309)
T ss_dssp             CTTCCC----CCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS----
T ss_pred             hhhhcc----CCCCCCeEEEEEccCCCCCChhHhcc-----------------------------ccccccccCCC----
Confidence            367876    68999999999999999999999975                             33444443211    


Q ss_pred             cCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-
Q 003469          221 AFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-  299 (817)
Q Consensus       221 ~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-  299 (817)
                          ........|.+||||||||||+|+...       +...+.||||+|+|+.+|++...+.+..++++.+++++++. 
T Consensus        59 ----~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~  127 (309)
T d2ixta1          59 ----TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQA  127 (309)
T ss_dssp             ----SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCccccccccccccccccc
Confidence                111234557889999999999986432       12346899999999999999887778888999999998875 


Q ss_pred             ----CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCccee
Q 003469          300 ----GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYK  373 (817)
Q Consensus       300 ----g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~  373 (817)
                          ...|+|+|++...        .......++..+.++|+++|+||||++....  ..++..+++++|++........
T Consensus       128 ~~~~~~~v~~~s~~~~~--------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~  199 (309)
T d2ixta1         128 TATGTKTIISMSLGSSA--------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG  199 (309)
T ss_dssp             HHHTCCEEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT
T ss_pred             ccccccccccccccccc--------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc
Confidence                3468999998743        2345677888899999999999999987654  3455678888888753211000


Q ss_pred             eEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHH
Q 003469          374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK  453 (817)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~  453 (817)
                      ..                                                                              
T Consensus       200 ~~------------------------------------------------------------------------------  201 (309)
T d2ixta1         200 TY------------------------------------------------------------------------------  201 (309)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             HHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccc
Q 003469          454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPI  533 (817)
Q Consensus       454 ~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (817)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (309)
T d2ixta1         202 --------------------------------------------------------------------------------  201 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003469          534 LHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK  613 (817)
Q Consensus       534 ~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~  613 (817)
                      ..........++++|+....       ..||||+|||.+|+++.          .+..|..++|||||||+|||++|||+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~-------~~~vdi~apG~~~~s~~----------~~~~~~~~sGTS~AaP~VaG~~Ali~  264 (309)
T d2ixta1         202 RVADYSSRGYISTAGDYVIQ-------EGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIW  264 (309)
T ss_dssp             EECTTSCCCCTTTTTSSSCC-------TTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccC-------CCcceeecCCCceeeec----------CCCcceeecCccchhHHHHHHHHHHH
Confidence            00001134556777777653       68999999999999997          45689999999999999999999999


Q ss_pred             HhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCc
Q 003469          614 QKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNP  670 (817)
Q Consensus       614 q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~  670 (817)
                      |++|+|+++|||++|++||++++..+..            ......++.+|+|++|+
T Consensus       265 ~~~p~lt~~~v~~~L~~tA~~~~~~~~~------------g~~~~~~~~~g~G~~~v  309 (309)
T d2ixta1         265 AENPSLSNTQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFARV  309 (309)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHTSCCCBST------------TCCSSSBTTTBTCBCCC
T ss_pred             HHCCCCCHHHHHHHHHhhCccCCCCCCc------------CCccCCCcccCCCEecC
Confidence            9999999999999999999988654321            12344567889999875


No 9  
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}
Probab=100.00  E-value=1.3e-42  Score=367.03  Aligned_cols=224  Identities=29%  Similarity=0.429  Sum_probs=185.7

Q ss_pred             CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469          152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP  231 (817)
Q Consensus       152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~  231 (817)
                      .+|+||+|||||||||++||+|.++                             +.....+               +..+
T Consensus        28 ~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------------~~~~~~~---------------~~~~   63 (279)
T d2pwaa1          28 SAGQGSCVYVIDTGIEASHPEFEGR-----------------------------AQMVKTY---------------YYSS   63 (279)
T ss_dssp             TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEES---------------SSCS
T ss_pred             CCCCCeEEEEECcCCCCCChhhcCC-----------------------------ceeccCC---------------CCCc
Confidence            6999999999999999999999975                             1111111               1234


Q ss_pred             CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcC-------CcEE
Q 003469          232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG-------VDIL  304 (817)
Q Consensus       232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g-------~dVI  304 (817)
                      .|.+||||||||||+|+.              .|+||+|+|+.+|++........+++..+++++....       ++|+
T Consensus        64 ~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  129 (279)
T d2pwaa1          64 RDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA  129 (279)
T ss_dssp             SCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred             ccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccce
Confidence            578899999999999963              5899999999999998876778888999999988753       4599


Q ss_pred             EecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC-ccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469          305 SLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT-LVSYSPWITTVAAAIDDRRYKNHLNLGNGKI  383 (817)
Q Consensus       305 n~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~  383 (817)
                      |+|||..         ..+.+..++.++.++|+++|+||||.+..... .+...|++|+|||++.               
T Consensus       130 n~s~g~~---------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------------  185 (279)
T d2pwaa1         130 SLSLGGG---------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------  185 (279)
T ss_dssp             EECCCEE---------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred             eccCCCc---------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee---------------
Confidence            9999963         34567888899999999999999999876443 4667889999998531               


Q ss_pred             EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469          384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG  463 (817)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G  463 (817)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (279)
T d2pwaa1         186 --------------------------------------------------------------------------------  185 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469          464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL  543 (817)
Q Consensus       464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  543 (817)
                                                                                                .+.++.
T Consensus       186 --------------------------------------------------------------------------~g~~~~  191 (279)
T d2pwaa1         186 --------------------------------------------------------------------------YDRRSS  191 (279)
T ss_dssp             --------------------------------------------------------------------------TSBBCT
T ss_pred             --------------------------------------------------------------------------cCCCcc
Confidence                                                                                      126789


Q ss_pred             ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHH
Q 003469          544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA  623 (817)
Q Consensus       544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~  623 (817)
                      ||++||..             ||+|||.+|+++.          .++.|..++|||||||+|||++|||+|++|.+++++
T Consensus       192 ~S~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~  248 (279)
T d2pwaa1         192 FSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASA  248 (279)
T ss_dssp             TCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTH
T ss_pred             ccCCCCcc-------------ccccccccccccc----------cCCcccCCCcchhHHHHHHHHHHHHHHhCCCChHHH
Confidence            99999976             9999999999998          456899999999999999999999999999999887


Q ss_pred             HHHHHhcccccc
Q 003469          624 IKSALMTTTTKL  635 (817)
Q Consensus       624 ik~~L~~TA~~~  635 (817)
                      +|. |++||++.
T Consensus       249 ~~~-ll~ta~~~  259 (279)
T d2pwaa1         249 CRY-IADTANKG  259 (279)
T ss_dssp             HHH-HHHHSEES
T ss_pred             HHH-HHHhCcCC
Confidence            775 67788763


No 10 
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}
Probab=100.00  E-value=2.9e-40  Score=356.01  Aligned_cols=289  Identities=26%  Similarity=0.345  Sum_probs=214.4

Q ss_pred             CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469          151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS  230 (817)
Q Consensus       151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~  230 (817)
                      |+||+||+|||||||||++||+|....        .|               +.++...+.+..             ..+
T Consensus        18 G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------~~---------------~~~~~~~~~~~~-------------~~~   61 (318)
T d1wmda2          18 GLYGQGQIVAVADTGLDTGRNDSSMHE--------AF---------------RGKITALYALGR-------------TNN   61 (318)
T ss_dssp             CCSCTTCEEEEEESCCTTSCSSTTSCT--------TT---------------TTCEEEEEETTT-------------TTC
T ss_pred             CccccCeEEEEEcCCcCCCCcccccCc--------cc---------------CCcEEeecCCCC-------------CCC
Confidence            799999999999999999999998641        01               123444444321             234


Q ss_pred             CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC--CCHHHHHHHHHHHHHcCCcEEEecC
Q 003469          231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSV  308 (817)
Q Consensus       231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~--~~~~di~~ai~~a~~~g~dVIn~Sl  308 (817)
                      +.|..||||||||||+|+..           ...||||+|+|+.+|++...+.  .....+..+++++...+++|+|+||
T Consensus        62 ~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~  130 (318)
T d1wmda2          62 ANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSW  130 (318)
T ss_dssp             CCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccc
Confidence            56789999999999999743           2479999999999999987543  2344578899999999999999999


Q ss_pred             CCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCcc--CCCCcEEEEeeeecCcceeeEEEeCCCcEEEe
Q 003469          309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLV--SYSPWITTVAAAIDDRRYKNHLNLGNGKILAG  386 (817)
Q Consensus       309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~  386 (817)
                      |......     .......+...+.++++++|+||||.|.......  ...++++++.+........             
T Consensus       131 g~~~~~~-----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------  192 (318)
T d1wmda2         131 GAAVNGA-----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------  192 (318)
T ss_dssp             CBCCTTC-----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------
T ss_pred             ccccccc-----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------
Confidence            9764322     3345566667788999999999999998765443  3456677766542111000             


Q ss_pred             eecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceE
Q 003469          387 IGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAG  466 (817)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~  466 (817)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (318)
T d1wmda2         193 --------------------------------------------------------------------------------  192 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccC
Q 003469          467 FVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA  546 (817)
Q Consensus       467 ~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS  546 (817)
                                                                                       .........+..||+
T Consensus       193 -----------------------------------------------------------------~~~~~~~~~~~~~s~  207 (318)
T d1wmda2         193 -----------------------------------------------------------------GSYADNINHVAQFSS  207 (318)
T ss_dssp             -----------------------------------------------------------------CGGGSCTTSBCTTSC
T ss_pred             -----------------------------------------------------------------ccccccccccccccc
Confidence                                                                             000111226778999


Q ss_pred             CCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCC--CccCCceEeecCccchhHHHHHHHHHHHHhCC-----CC
Q 003469          547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEA--NFVGEGFALISGTSMAAPHIAGIAALVKQKHP-----YW  619 (817)
Q Consensus       547 ~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-----~l  619 (817)
                      +||....       ..|||++|||.+|+++.........  ......|..++|||||||||||++|||+|++|     .+
T Consensus       208 ~G~~~~~-------~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~  280 (318)
T d1wmda2         208 RGPTKDG-------RIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITP  280 (318)
T ss_dssp             CCCCTTS-------CCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             cCCCcCC-------CcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCC
Confidence            9998764       7899999999999998765432211  11235788899999999999999999999744     57


Q ss_pred             CHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          620 SPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       620 s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      ++.+||++|++||+++...                   .++..||||+||+.+||+
T Consensus       281 ~~~~i~~~l~~tA~~~~~~-------------------~~~~~~G~G~ld~~~Al~  317 (318)
T d1wmda2         281 KPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLN  317 (318)
T ss_dssp             CHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHT
T ss_pred             CHHHHHHHHHhhCccCCCC-------------------CCCCCeeeceecHHHHhC
Confidence            8999999999999986532                   345689999999999986


No 11 
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1e-38  Score=346.25  Aligned_cols=287  Identities=20%  Similarity=0.233  Sum_probs=187.5

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..    +++|+||+|||||||||++||+|.++..          .                   .++|....    .
T Consensus        28 ~aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~----------~-------------------~~~~~~~~----~   70 (334)
T d1p8ja2          28 EAWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD----------P-------------------GASFDVND----Q   70 (334)
T ss_dssp             HHHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC----------G-------------------GGCEETTT----T
T ss_pred             HHHhc----CCCCCCeEEEEEccCCCCCChhHhhccc----------c-------------------CCCccccC----C
Confidence            46765    7899999999999999999999997521          0                   11110000    0


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DG  300 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g  300 (817)
                      .....+.....|..+|||||||||+|....+        ....|+||+++++.+|++...    ..+.+.++.++++ .+
T Consensus        71 ~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~  138 (334)
T d1p8ja2          71 DPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDGE----VTDAVEARSLGLNPNH  138 (334)
T ss_dssp             BSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSSC----CCHHHHHHHHTSCTTT
T ss_pred             CCccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhcccc----ccchHHHHHHHhhhcC
Confidence            0011122334578899999999999975422        135799999999999987542    3355667777765 68


Q ss_pred             CcEEEecCCCCCCCCCCccCC----CChHHHHHHHHHHcCceEEEecCCCCCCCCCcc----CCCCcEEEEeeeecCcce
Q 003469          301 VDILSLSVGPNSPPATTKTTF----LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLV----SYSPWITTVAAAIDDRRY  372 (817)
Q Consensus       301 ~dVIn~SlG~~~~~~~~~~~~----~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~----~~~~~vitVgA~~~~~~~  372 (817)
                      ++++|||||............    ...+..++..+..+|+++|+||||++.......    ...+.+++|++...    
T Consensus       139 ~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~----  214 (334)
T d1p8ja2         139 IHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ----  214 (334)
T ss_dssp             CCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT----
T ss_pred             CcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc----
Confidence            999999999753321110000    112333445567799999999999876543221    12344555544321    


Q ss_pred             eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469          373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI  452 (817)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~  452 (817)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (334)
T d1p8ja2         215 --------------------------------------------------------------------------------  214 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469          453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP  532 (817)
Q Consensus       453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (817)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (334)
T d1p8ja2         215 --------------------------------------------------------------------------------  214 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCC-----cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHH
Q 003469          533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGS-----LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAG  607 (817)
Q Consensus       533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~-----~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG  607 (817)
                           .+..+.||++|+....           ++.+||.     .+.+..          .+..|..++|||||||||||
T Consensus       215 -----~g~~~~~s~~~~~~~~-----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~sGTS~AaP~VaG  268 (334)
T d1p8ja2         215 -----FGNVPWYSEACSSTLA-----------TTYSSGNQNEKQIVTTDL----------RQKCTESHTGTSASAPLAAG  268 (334)
T ss_dssp             -----TSCCCTTCCBCTTCCE-----------EEECCCSTTSCCEEEEET----------TTEEEEEECSHHHHHHHHHH
T ss_pred             -----CCceeeecccCCcccc-----------cccccccccccccccccc----------CCccccCCCCccccchHHHH
Confidence                 1234455555554321           3333332     233332          34578999999999999999


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469          608 IAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD  675 (817)
Q Consensus       608 ~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  675 (817)
                      ++|||+|++|+|++.|||++|++||++...........        .........||+|+||+.+||+
T Consensus       269 ~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~--------~~~~~~~~~~G~G~lna~~Av~  328 (334)
T d1p8ja2         269 IIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVA  328 (334)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccccc--------CCCcccCCCCcceEeCHHHHHH
Confidence            99999999999999999999999999876543322111        1111233578999999999986


No 12 
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=3.5e-38  Score=342.81  Aligned_cols=289  Identities=19%  Similarity=0.188  Sum_probs=200.3

Q ss_pred             CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469          142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA  221 (817)
Q Consensus       142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~  221 (817)
                      .+|..    +++|+||+|||||||||++||+|.++.         +.                  -+.++|.+.      
T Consensus        37 ~aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~---------~~------------------~~~~~~~~~------   79 (339)
T d2id4a2          37 DLWYN----NITGAGVVAAIVDDGLDYENEDLKDNF---------CA------------------EGSWDFNDN------   79 (339)
T ss_dssp             HHHHT----TCSCTTCEEEEEESCCCTTSTTTTTTB---------CG------------------GGCEETTTT------
T ss_pred             HHHhc----CCCCCCcEEEEECcCcCCCChHHhcCc---------cc------------------ccccccccC------
Confidence            46765    799999999999999999999999761         10                  012233221      


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469          222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV  301 (817)
Q Consensus       222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~  301 (817)
                         ........++++|||||||+|+|.....        ..+.||||+|+|+.++++..  ....+++..++.++.+. .
T Consensus        80 ---~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~  145 (339)
T d2id4a2          80 ---TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDV-N  145 (339)
T ss_dssp             ---BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTT-C
T ss_pred             ---CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHHHHhh-C
Confidence               0112234567899999999999875422        23589999999999998753  46677788888887765 5


Q ss_pred             cEEEecCCCCCCCCCCccCCCC-----hHHHHHHHHHHcCceEEEecCCCCCCCCCc--cC--CCCcEEEEeeeecCcce
Q 003469          302 DILSLSVGPNSPPATTKTTFLN-----PFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VS--YSPWITTVAAAIDDRRY  372 (817)
Q Consensus       302 dVIn~SlG~~~~~~~~~~~~~~-----~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~--~~~~vitVgA~~~~~~~  372 (817)
                      +|+|+|+|........ .....     ....+...+..+|+++|+||||++......  +.  ..+.+++|+++.     
T Consensus       146 ~v~~~s~g~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~-----  219 (339)
T d2id4a2         146 DIYSCSWGPADDGRHL-QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID-----  219 (339)
T ss_dssp             SEEEECEESCCSSSCC-BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----
T ss_pred             CEEeccCCCCCCcccc-cCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc-----
Confidence            9999999974322111 11111     123344556679999999999987643221  11  123333333321     


Q ss_pred             eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469          373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI  452 (817)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~  452 (817)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (339)
T d2id4a2         220 --------------------------------------------------------------------------------  219 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469          453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP  532 (817)
Q Consensus       453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (817)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (339)
T d2id4a2         220 --------------------------------------------------------------------------------  219 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003469          533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV  612 (817)
Q Consensus       533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl  612 (817)
                          ..+..+.||++|+..         ...++..+||..+.++..         .+..|..++|||||||||||++|||
T Consensus       220 ----~~g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~vaG~aALv  277 (339)
T d2id4a2         220 ----HKDLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGVYTLL  277 (339)
T ss_dssp             ----TTSCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHHHHHH
T ss_pred             ----ccccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHHHHHHHHHH
Confidence                122566777777765         456789999999988764         3467899999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469          613 KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP  676 (817)
Q Consensus       613 ~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  676 (817)
                      +|++|+|++.|||.+|++||++++.........       ..........||||+||+.+||+.
T Consensus       278 ~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~-------~~~~~~~~~~~G~G~ln~~~Av~~  334 (339)
T d2id4a2         278 LEANPNLTWRDVQYLSILSAVGLEKNADGDWRD-------SAMGKKYSHRYGFGKIDAHKLIEM  334 (339)
T ss_dssp             HHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEE-------CSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHhCcccCCCCCccccc-------cCCCCCcCCCccchhhCHHHHHHH
Confidence            999999999999999999999876432211000       011223345799999999999974


No 13 
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}
Probab=99.96  E-value=3.9e-31  Score=288.62  Aligned_cols=164  Identities=23%  Similarity=0.262  Sum_probs=109.5

Q ss_pred             CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469          151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS  230 (817)
Q Consensus       151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~  230 (817)
                      +++|+||+|||||||||++||||.+.          |+..                                ........
T Consensus        20 G~tG~Gv~VaViDtGvd~~H~dl~~~----------~~~~--------------------------------~~~~~~~~   57 (357)
T d1t1ga_          20 GLDGQGQCIAIIALGGGYDETSLAQY----------FASL--------------------------------GVSAPQVV   57 (357)
T ss_dssp             TCCCTTCEEEEEESSCCCCHHHHHHH----------HHHT--------------------------------TCCCCCEE
T ss_pred             CCCCCCCEEEEEEcCCCCCcHHHHHH----------Hhhc--------------------------------CCCCCCCc
Confidence            78999999999999999999999853          1000                                00000112


Q ss_pred             CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH---HcCCcEEEec
Q 003469          231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV---HDGVDILSLS  307 (817)
Q Consensus       231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~---~~g~dVIn~S  307 (817)
                      +.|.++|+||++|++++......    .....+.||||+|+|+.+|+....     ..++.++++++   +++++|||||
T Consensus        58 ~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~Vin~S  128 (357)
T d1t1ga_          58 SVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD-----AGFLNAITTAVHDPTHKPSIVSIS  128 (357)
T ss_dssp             EEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH-----HHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred             eeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC-----CchHHHHHHHHHhhhcCCeEEecc
Confidence            33567899999988776432110    011136899999999999987542     23455555554   4699999999


Q ss_pred             CCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--------ccCCCCcEEEEeeee
Q 003469          308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--------LVSYSPWITTVAAAI  367 (817)
Q Consensus       308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~~~~vitVgA~~  367 (817)
                      ||.......  ......+..++..+..+|+++|+|+||+|.....        .+...+++++|++..
T Consensus       129 ~G~~~~~~~--~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (357)
T d1t1ga_         129 WGGPEDSWA--PASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR  194 (357)
T ss_dssp             CCEEGGGSC--HHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred             cccCcCccc--cchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence            997432111  1123456677778888999999999999854322        234577888888764


No 14 
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}
Probab=99.95  E-value=1.2e-29  Score=278.08  Aligned_cols=125  Identities=16%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             CCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-CCcEEEecCCCC
Q 003469          233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-GVDILSLSVGPN  311 (817)
Q Consensus       233 D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-g~dVIn~SlG~~  311 (817)
                      +..+||||+++++.+....         ..+.||||+|+|+++|++.+.+....++++++|+||+++ +++|||+|||..
T Consensus        66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~  136 (369)
T d1ga6a_          66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC  136 (369)
T ss_dssp             TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred             CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence            4678999999998875321         236899999999999999987777888999999999965 799999999974


Q ss_pred             CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-------------CccCCCCcEEEEeeee
Q 003469          312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-------------TLVSYSPWITTVAAAI  367 (817)
Q Consensus       312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-------------~~~~~~~~vitVgA~~  367 (817)
                      ...... ....+.++++++++..+|++||+||||+|....             ..++..+++++|+++.
T Consensus       137 ~~~~~~-~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~  204 (369)
T d1ga6a_         137 EADANA-DGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT  204 (369)
T ss_dssp             HHHHHH-TTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred             ccCCCc-chHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence            321110 123456777888899999999999999986432             2245678999999864


No 15 
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=98.44  E-value=3.6e-07  Score=72.08  Aligned_cols=43  Identities=23%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceecc
Q 003469           85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR  128 (817)
Q Consensus        85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~  128 (817)
                      +.++.++|+ .||||++++++++++.|+++|+|.+||+|+.+++
T Consensus        28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a   70 (71)
T d1scjb_          28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE   70 (71)
T ss_dssp             TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred             CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence            567888897 7999999999999999999999999999998764


No 16 
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=98.38  E-value=5.6e-07  Score=71.18  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=31.3

Q ss_pred             EEEEec-cccceEEEEcCHHHHHHHHcCCC--ceEEEccc
Q 003469           88 KLYSYK-HLINGFAVHITPDQAEILQRAPG--VKSVERDW  124 (817)
Q Consensus        88 ~~~~y~-~~~ng~sv~~~~~~~~~L~~~p~--V~~V~~~~  124 (817)
                      +.+.|. ..||||+++++++.++.|+++|.  |.+||+|.
T Consensus        32 ~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~   71 (72)
T d1v5ib1          32 ITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH   71 (72)
T ss_dssp             CCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred             eEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence            344555 58999999999999999999665  99999985


No 17 
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=95.92  E-value=0.028  Score=46.65  Aligned_cols=78  Identities=22%  Similarity=0.178  Sum_probs=54.1

Q ss_pred             CCCcEEEeeecceEEEEEEEEEcCCC-c-eEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCC-ceEEEEEE
Q 003469          721 NTPSITVAHLVKTQVVTRTVTNVAEE-E-TYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTG-TYSFGEIC  797 (817)
Q Consensus       721 n~ps~~~~~~~~~~~~~~tv~n~~~~-~-ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~-~~~~G~i~  797 (817)
                      ..|++.+.- ....+++.+|+|.+.. . .-++....|.|=++  .+..+.|+||+++++++++++|.... ..|.=.++
T Consensus         7 t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~   83 (103)
T d1w8oa1           7 TIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGAT   83 (103)
T ss_dssp             ECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred             cCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--cCcceeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence            356666532 3456688899999988 3 35677788888554  45667799999999999999987543 33444455


Q ss_pred             EEeC
Q 003469          798 MKGS  801 (817)
Q Consensus       798 ~~~~  801 (817)
                      ++.+
T Consensus        84 a~~~   87 (103)
T d1w8oa1          84 LRTS   87 (103)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            5544


No 18 
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.59  E-value=0.077  Score=48.81  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=34.7

Q ss_pred             ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC
Q 003469          430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS  475 (817)
Q Consensus       430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~  475 (817)
                      .+++|||+|+.+      |.+.+.+|+.+|++.||.|+|+|.+...
T Consensus        59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~d   98 (193)
T d1de4c2          59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQTK   98 (193)
T ss_dssp             SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTTT
T ss_pred             cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCccc
Confidence            468999999986      5677899999999999999999987543


No 19 
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.38  E-value=0.15  Score=48.42  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=33.5

Q ss_pred             ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003469          430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN  473 (817)
Q Consensus       430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~  473 (817)
                      -+++|||+|+.+      |...+.+|+.+|++.||.|+|+|++.
T Consensus        77 i~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP  114 (233)
T d3bi1a2          77 INCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDP  114 (233)
T ss_dssp             CCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred             CcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecCh
Confidence            478999999986      56678999999999999999999863


No 20 
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=70.89  E-value=18  Score=29.69  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             ceEEEEEEEEEcCCCc--eEE--EEEEcCCCc---EEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCc
Q 003469          732 KTQVVTRTVTNVAEEE--TYS--MSARMQPAI---AIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGH  804 (817)
Q Consensus       732 ~~~~~~~tv~n~~~~~--ty~--~~~~~~~~~---~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~  804 (817)
                      +...++.+|+|.++..  -|-  +.+....|-   -+--+-.-|+|=|||+++|+|++......+..  -.|.+.+=+-.
T Consensus        38 g~~~v~vtl~N~s~~~~pAff~rL~l~d~~g~~IlPv~~sDNY~sL~PGE~~~v~i~~~~~~~~~~~--~~l~v~G~Nv~  115 (122)
T d2vzsa2          38 GTTTTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWNDNAVSLWPGETTTLTAKYRTADLKGSK--PSVRISGWNTG  115 (122)
T ss_dssp             SEEEEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESSCSEEECTTCEEEEEEEEEGGGGTTCC--CEEEEEETTTE
T ss_pred             CcEEEEEEEEcCCCCccEEEEEEEEeEcCCCCEecceEeeCCeEEEcCCCeEEEEEEecccccCCCc--eEEEEeeeecC
Confidence            4566788999998741  333  333333342   24456678999999999999999865432211  13555554444


Q ss_pred             EEEEe
Q 003469          805 KVNIP  809 (817)
Q Consensus       805 ~l~iP  809 (817)
                      .-.||
T Consensus       116 ~~~v~  120 (122)
T d2vzsa2         116 TQTVP  120 (122)
T ss_dssp             EEEEE
T ss_pred             cEEec
Confidence            44555


No 21 
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=69.90  E-value=5  Score=32.85  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=36.5

Q ss_pred             EEEEEEEEcCCC-ceEEEEEEcC----CC---cEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003469          735 VVTRTVTNVAEE-ETYSMSARMQ----PA---IAIEVNPPAMTLKPGASRKFTVTLTVRS  786 (817)
Q Consensus       735 ~~~~tv~n~~~~-~ty~~~~~~~----~~---~~v~~~~~~~tv~~g~~~~~~v~~~~~~  786 (817)
                      .++.+++|.+++ .+-++.....    .|   ..+.-...+++|+||++.++.+++....
T Consensus        19 ~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~~~v~L~p~~~~~v~~~v~~~~   78 (112)
T d1ex0a2          19 KLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGE   78 (112)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTEEEEEEEEECHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEeeEEEEECCCCEEEEEEEEcHHH
Confidence            466789998887 5544443321    22   3455556689999999999999998754


No 22 
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=66.82  E-value=10  Score=30.52  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             EEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEe
Q 003469          737 TRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVR  785 (817)
Q Consensus       737 ~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~  785 (817)
                      +.+++|.++. ..|++.-+.+.-  ..+.|..=.|.||++.++.|+..+.
T Consensus        18 ~~~l~N~s~~~vafKvKtt~~~~--y~V~P~~G~i~P~~~~~I~I~~~~~   65 (107)
T d1rowa_          18 THKLVNGGAEKIVFKIKSSNNNE--YRIAPVFGFVDPSGSKDVVITRTAG   65 (107)
T ss_dssp             EEEEEECSSSCEEEEEEESCSSS--EEEECSEEEECTTEEEEEEEEECSC
T ss_pred             EEEEEcCCCCeEEEEEEcCCCCe--EEEECCEEEECCCCEEEEEEEeCCC
Confidence            4589999999 999998877654  5667999999999999999987553


No 23 
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=63.40  E-value=11  Score=31.35  Aligned_cols=51  Identities=18%  Similarity=0.277  Sum_probs=41.4

Q ss_pred             ceEEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEE
Q 003469          732 KTQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTV  784 (817)
Q Consensus       732 ~~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~  784 (817)
                      ...+-..+|+|.++. ..|++.-+.+.-  ..+.|..=.|.||++.+|+|++.+
T Consensus        23 ~~~~~~l~l~N~s~~~vafKvktt~p~~--y~v~P~~G~i~p~~~~~i~V~~~~   74 (124)
T d1grwa_          23 DKHTYHIKVINSSARRIGYGIKTTNMKR--LGVDPPCGVLDPKEAVLLAVSCDA   74 (124)
T ss_dssp             SCEEEEEEEEECSSSCEEEEEEESCTTT--EEEESSEEEECTTCEEEEEEEECC
T ss_pred             cEEEEEEEEECCCCCeEEEEEEeCCCce--EEEECCCCEECCCCEEEEEEEEec
Confidence            334445689999999 999999877764  556688888999999999999976


No 24 
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=62.99  E-value=13  Score=30.03  Aligned_cols=49  Identities=10%  Similarity=0.133  Sum_probs=40.3

Q ss_pred             EEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecC
Q 003469          737 TRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSV  787 (817)
Q Consensus       737 ~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~  787 (817)
                      +.+++|.++. ..|++.-+.+.-  ..+.|..=.|+||++.++.|+..+...
T Consensus        21 ~~~l~N~s~~~vafKiktt~~~~--y~V~P~~G~I~P~~~~~i~I~~~~~~~   70 (109)
T d1m1sa_          21 THNITSESDSRLAFKVKSSNNEH--YRVRPVYGFVDAKGKSKLDINRLPGPP   70 (109)
T ss_dssp             EEEEEECSSSEEEEEEEESCTTT--EEEECSEEEECTTCEEEEEEEECSCCS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe--EEEeCCeeEECCCCeEEEEEEeCCCCC
Confidence            4589999999 899988877764  566789999999999999999876443


No 25 
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=56.97  E-value=10  Score=30.78  Aligned_cols=52  Identities=12%  Similarity=0.010  Sum_probs=34.8

Q ss_pred             EEEEEEEEcCCC-ceEEEEEEc-------CCCcEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003469          735 VVTRTVTNVAEE-ETYSMSARM-------QPAIAIEVNPPAMTLKPGASRKFTVTLTVRS  786 (817)
Q Consensus       735 ~~~~tv~n~~~~-~ty~~~~~~-------~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~  786 (817)
                      .+..+++|.+++ .+-++...+       ..+..+.-...+++|+||++.++.+++....
T Consensus        18 ~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~~~v~L~p~~~~~v~~~i~y~~   77 (112)
T d1g0da2          18 DVIVEVKNEGGRDAHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHYDD   77 (112)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEEECTTCBCCCCCCEEEEEEEECTTEEEEEEEEECHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEEEEEEeCCcCccceeEeeEEEEECCCCeEEEEEEEcHHH
Confidence            456689998886 444443322       1223344444679999999999999998754


No 26 
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=56.00  E-value=16  Score=29.75  Aligned_cols=52  Identities=10%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             EEEEEEEEcCCC-ceEEEEEEcC----CC---cEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003469          735 VVTRTVTNVAEE-ETYSMSARMQ----PA---IAIEVNPPAMTLKPGASRKFTVTLTVRS  786 (817)
Q Consensus       735 ~~~~tv~n~~~~-~ty~~~~~~~----~~---~~v~~~~~~~tv~~g~~~~~~v~~~~~~  786 (817)
                      .+..+++|.+++ .+-++...+.    .|   ..+.-...+++|+|+++.++.+++....
T Consensus        21 ~v~l~~~N~s~~~~~v~l~l~a~av~YtG~~~~~~~~~~~~v~L~p~~~~~v~~~v~y~~   80 (115)
T d1vjja2          21 NLVLLLKNLSRDTKTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQ   80 (115)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECTTCEEEEEEEECHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEeeEEEEECCCCeEEEEEEECHHH
Confidence            456789998886 4444443321    23   2344445689999999999999998754


No 27 
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=45.93  E-value=23  Score=28.64  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=34.1

Q ss_pred             EEEEEEEEcCCC-ceEEEEEEcC----CCc---EEEE-ecCeEEEcCCCEEEEEEEEEEec
Q 003469          735 VVTRTVTNVAEE-ETYSMSARMQ----PAI---AIEV-NPPAMTLKPGASRKFTVTLTVRS  786 (817)
Q Consensus       735 ~~~~tv~n~~~~-~ty~~~~~~~----~~~---~v~~-~~~~~tv~~g~~~~~~v~~~~~~  786 (817)
                      .+..+++|.+++ .+-++...+.    .|+   .+.. ....++|+|+++.++.+++....
T Consensus        19 ~v~~~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~k~~~~v~L~p~~~~~v~~~v~y~~   79 (114)
T d2q3za2          19 DVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEK   79 (114)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECTTEEEEEEEEECHHH
T ss_pred             EEEEEEEeCCCCCEEEEEEEEEEEEEeCCcCcceeEEecceEEEECCCCEEEEEEEEcHHH
Confidence            456689998886 4444433321    333   3322 23478999999999999998754


No 28 
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=42.86  E-value=24  Score=35.66  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCC
Q 003469          538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSP  579 (817)
Q Consensus       538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~  579 (817)
                      .+.++.||++|+..             ||.|||.+|+|+.+.
T Consensus       183 ~~~~~~~s~~g~~v-------------dv~apG~~i~st~~~  211 (435)
T d1v6ca_         183 NLDHAAFSQYTDQV-------------EISGPGEAILSTVTV  211 (435)
T ss_dssp             TCCBCTTSCCCSSE-------------EEEEECSSEEEECST
T ss_pred             CCCcccccCCCCce-------------EEeecccceeeeeec
Confidence            35788999999876             899999999998754


No 29 
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}
Probab=40.15  E-value=50  Score=26.32  Aligned_cols=28  Identities=11%  Similarity=0.233  Sum_probs=20.8

Q ss_pred             EEEEEEEEEcCCC--ceEEEEEEcCCCcEE
Q 003469          734 QVVTRTVTNVAEE--ETYSMSARMQPAIAI  761 (817)
Q Consensus       734 ~~~~~tv~n~~~~--~ty~~~~~~~~~~~v  761 (817)
                      -.-.++|+|.++.  .-|+++++.|.+.+|
T Consensus        21 f~~~vtVtN~~~~~~~gW~v~~~~p~g~~i   50 (110)
T d1exha_          21 FTANVTVKNTSSAPVDGWTLTFSFPSGQQV   50 (110)
T ss_dssp             EEEEEEEEECSSSCEESEEEEEECSSCCEE
T ss_pred             cEEEEEEEeCCCCcccCcEEEEECCCCCEE
Confidence            3445689999987  569999987766544


No 30 
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.67  E-value=34  Score=29.12  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=38.5

Q ss_pred             EEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEe
Q 003469          737 TRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVR  785 (817)
Q Consensus       737 ~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~  785 (817)
                      ..+|+|.+.. ..|++.-+.+.-  ..+.|..=.|+||++.+|.|++...
T Consensus        40 ~l~l~N~s~~~vaFKiktt~p~~--y~V~P~~G~i~p~~~~~I~v~~~~~   87 (152)
T d1wica_          40 LIVLTNVTKNIVAFKVRTTAPEK--YRVKPSNSSCDPGASIDIIVSPHGG   87 (152)
T ss_dssp             EEEEEBCSSSCEEEEEEESCTTT--EEEESSEEEECTTCEEEEEEEECSS
T ss_pred             EEEEECCCCCeEEEEEEcCCCcc--EEEECCceEECCCCEEEEEEEECCC
Confidence            3589999999 999998887765  4556888889999999988887553


No 31 
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}
Probab=37.86  E-value=10  Score=30.09  Aligned_cols=31  Identities=29%  Similarity=0.596  Sum_probs=23.1

Q ss_pred             ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEE
Q 003469          747 ETYSMSARMQPAIAIEVNPPAMTLKPGASRKF  778 (817)
Q Consensus       747 ~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~  778 (817)
                      +||++.+....| .+.++|..|++++|++.+|
T Consensus         1 eT~tV~v~~~~g-~~~F~P~~i~v~~GdtV~f   31 (105)
T d2cj3a1           1 ETYTVKLGSDKG-LLVFEPAKLTIKPGDTVEF   31 (105)
T ss_dssp             CEEEEEESCTTC-CSSEESSEEEECTTCEEEE
T ss_pred             CcEEEEEEeCCC-ceEEeCCEEEECCCCEEEE
Confidence            467777754433 4678999999999997655


No 32 
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}
Probab=34.23  E-value=12  Score=29.65  Aligned_cols=32  Identities=22%  Similarity=0.547  Sum_probs=22.8

Q ss_pred             ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEE
Q 003469          747 ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFT  779 (817)
Q Consensus       747 ~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~  779 (817)
                      +|+++.+....+ .+.++|..|++++|++.+|.
T Consensus         1 et~tV~vg~~~g-~~~F~P~~l~v~~GdtV~f~   32 (105)
T d2q5ba1           1 ETFTVKMGADSG-LLQFEPANVTVHPGDTVKWV   32 (105)
T ss_dssp             CEEEEEESCTTS-CSSEESSEEEECTTEEEEEE
T ss_pred             CcEEEEEecCCC-ceEEeCCEEEECCCCEEEEE
Confidence            356666643333 57789999999999976663


No 33 
>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.78  E-value=27  Score=28.38  Aligned_cols=65  Identities=11%  Similarity=0.021  Sum_probs=40.7

Q ss_pred             cCCCCcEEEeeecceEEEEEEEEEcCCC-ceEEEEEEcCCCcEEEE-ecCeEEEcCCCEEEEEEEEEEe
Q 003469          719 NFNTPSITVAHLVKTQVVTRTVTNVAEE-ETYSMSARMQPAIAIEV-NPPAMTLKPGASRKFTVTLTVR  785 (817)
Q Consensus       719 ~ln~ps~~~~~~~~~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~-~~~~~tv~~g~~~~~~v~~~~~  785 (817)
                      +||+|..-..  ....+++.+|.|.-++ ..-+++......+.... ...++.|++|++++|...+.+.
T Consensus        11 ~l~lP~sv~r--ge~~~i~~~V~Nyl~~~~~v~v~L~~s~~~~~~~~~~~~~cv~~~~~~t~~w~i~~~   77 (118)
T d3es6b1          11 NFDIPKSVRP--NDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTN   77 (118)
T ss_dssp             CCCCCSEECS--SCCEEEEEEEEECCSSCEEEEEEEEESSCCCSGGGCEEEEEECSSSCEEEEEEECCS
T ss_pred             EcCCCceEec--CCEEEEEEEEEECccceEEEEEEEecCCCEEccCCCCcceEECCCCceEEEEEEEec
Confidence            5677764432  3455677789998887 65555554332221100 1247889999999988888664


No 34 
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.59  E-value=37  Score=23.90  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             chhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003469          600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTT  631 (817)
Q Consensus       600 mAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T  631 (817)
                      .|+|-|---++-+++.+|.+-+-|||..|..-
T Consensus         9 vaTP~V~~kI~~yK~enP~iFaWEIRd~Li~e   40 (61)
T d1k78a2           9 VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAE   40 (61)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHhcCCcccHHHHHHHHHHc
Confidence            57999999999999999999999999999864


No 35 
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=24.89  E-value=37  Score=27.85  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=32.7

Q ss_pred             EEEEEEEcCCCceEEEEE--Ec---CCCcEEEEecCeEEEcCCCEEEEEEEEEE
Q 003469          736 VTRTVTNVAEEETYSMSA--RM---QPAIAIEVNPPAMTLKPGASRKFTVTLTV  784 (817)
Q Consensus       736 ~~~tv~n~~~~~ty~~~~--~~---~~~~~v~~~~~~~tv~~g~~~~~~v~~~~  784 (817)
                      .+.+|+|.++. .|.+..  ..   .....+-++|.-+.|+||++..+.|.-..
T Consensus        23 ~sv~l~N~~~~-p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~~~   75 (128)
T d2co7b1          23 ATLSVSNPQNY-PILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG   75 (128)
T ss_dssp             EEEEEECCSSS-CEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECC
T ss_pred             EEEEEEeCCCC-cEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEecC
Confidence            44588997764 444432  21   12345778899999999999988887543


No 36 
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}
Probab=24.13  E-value=1.6e+02  Score=23.40  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=41.2

Q ss_pred             EEEEEEEEcCCCceEEEEEEc--CC-----CcEEEEecCeEEEcCCCEEEEEEEEEEec---CCCceEEEEEEEEe
Q 003469          735 VVTRTVTNVAEEETYSMSARM--QP-----AIAIEVNPPAMTLKPGASRKFTVTLTVRS---VTGTYSFGEICMKG  800 (817)
Q Consensus       735 ~~~~tv~n~~~~~ty~~~~~~--~~-----~~~v~~~~~~~tv~~g~~~~~~v~~~~~~---~~~~~~~G~i~~~~  800 (817)
                      ..+.+|+|.++...|-+....  ..     ...+-++|.-+.|+||++..+.|......   +.+...-=||.+.+
T Consensus        17 ~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~~~~~~~lP~drEs~~~l~i~~   92 (124)
T d2j2za1          17 SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLRE   92 (124)
T ss_dssp             EEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEECGGGGGSCSSSCEEEEEEEEE
T ss_pred             EEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEEcCCCCCCCCceeEEEEEEEEe
Confidence            345689997765456554321  11     12377889999999999999999876421   23333334455553


No 37 
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=21.69  E-value=41  Score=27.17  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=28.5

Q ss_pred             eEEEEEEEEEcCCC-ceEEEEE----Ec----------CCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003469          733 TQVVTRTVTNVAEE-ETYSMSA----RM----------QPAIAIEV-NPPAMTLKPGASRKFTVT  781 (817)
Q Consensus       733 ~~~~~~tv~n~~~~-~ty~~~~----~~----------~~~~~v~~-~~~~~tv~~g~~~~~~v~  781 (817)
                      ..+++.+|+|+|+. ..- -+|    +.          .-|-.+.+ +.+.+.++||++++|+|.
T Consensus        21 r~~~~l~V~NtGDRpIQV-GSH~HF~E~N~aL~FDR~~a~G~RLdIpaGTavRFEPG~~k~V~LV   84 (122)
T d4ubpb_          21 REKTTIRVSNTGDRPIQV-GSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT   84 (122)
T ss_dssp             SCEEEEEEEECSSSCEEE-ETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             CCEEEEEEEeCCCcceee-ccccChhhcCccccccHHHHhhcccCCCCCCeEEECCCCeEEEEEE
Confidence            34567799999997 220 011    11          12223333 235788999999998874


No 38 
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.61  E-value=57  Score=27.03  Aligned_cols=25  Identities=24%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             EEEEecCeEE--EcCCCEEEEEEEEEE
Q 003469          760 AIEVNPPAMT--LKPGASRKFTVTLTV  784 (817)
Q Consensus       760 ~v~~~~~~~t--v~~g~~~~~~v~~~~  784 (817)
                      .+++.|+.|.  |.||+.++|+|++..
T Consensus        23 ~vQi~PQ~i~L~LRpG~~~~f~l~~r~   49 (135)
T d1tyeb1          23 VTQVSPQRIALRLRPDDSKNFSIQVRQ   49 (135)
T ss_dssp             CCCBSCSEEEEEECTTCEEEEEEEEEC
T ss_pred             eEEEeceEEEEEeCCCCcEEEEEEEEE
Confidence            4677788655  569999999998865


No 39 
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Probab=21.35  E-value=32  Score=29.04  Aligned_cols=34  Identities=24%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003469          593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA  627 (817)
Q Consensus       593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~  627 (817)
                      ..+.|.|= |++|.|++||+...+-..+|++|.++
T Consensus        65 ~~f~~dSd-a~IvkGl~ail~~~~~g~t~~eI~~~   98 (144)
T d1mzga_          65 IELQGDSD-AAIVKGLIAVVFILYDQMTPQDIVNF   98 (144)
T ss_dssp             EEEEEEES-SHHHHHHHHHHHHHTTTCCHHHHHHC
T ss_pred             eEEEeeCc-hHHHHHHHHHHHHHHCCCCHHHHHhc
Confidence            34456663 48999999999999999999998764


No 40 
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.50  E-value=1.3e+02  Score=24.40  Aligned_cols=77  Identities=13%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             EEEEEEEEcCCC--ceEEEEEEcCC----CcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCC---CcE
Q 003469          735 VVTRTVTNVAEE--ETYSMSARMQP----AIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSR---GHK  805 (817)
Q Consensus       735 ~~~~tv~n~~~~--~ty~~~~~~~~----~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~---~~~  805 (817)
                      .+...+.|.+..  ..|++++..+.    .+.++..+-.-+++||+.....+.+.....-...-...|.++-.+   ...
T Consensus        45 ~i~l~~gNKt~~~l~~f~~~i~~~~~~~~~l~i~~~~~~~~I~~~~Q~qq~i~i~~~~~f~~~P~l~isy~~~g~~~~~~  124 (133)
T d1kyfa1          45 RMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVS  124 (133)
T ss_dssp             EEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEcCCCcccccEEEEEecCCCCCccEEEecccCCCeECCCcEEEEEEEEEEecCcCCCCEEEEEEEECCeeEEEE
Confidence            456688998775  56777776542    344555444457999999999999988654332223455554322   245


Q ss_pred             EEEeEE
Q 003469          806 VNIPVI  811 (817)
Q Consensus       806 l~iP~~  811 (817)
                      |++|++
T Consensus       125 LkLPi~  130 (133)
T d1kyfa1         125 VKLPIT  130 (133)
T ss_dssp             EECCCC
T ss_pred             EecCce
Confidence            777764


Done!