BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003470
(817 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 272 bits (695), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 226/666 (33%), Positives = 314/666 (47%), Gaps = 86/666 (12%)
Query: 130 TTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRG 189
TT + +FLG P V + +IV+G +D+GI+P PSF P P PK++G
Sbjct: 1 TTRSWDFLGFPLTV----PRRSQVESNIVVGVLDTGIWPESPSFDDEGFSP--PPPKWKG 54
Query: 190 KCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAAGNN 249
CE + + CN KIIG D P D +GHG+HTA+ AAG
Sbjct: 55 TCETSNNFR---CNRKIIGARSYHIGRPISPG-----DVNGPRDTNGHGTHTASTAAGGL 106
Query: 250 GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSLSVG 309
++G G A G P ARIA YK + G GVDI+SLSVG
Sbjct: 107 VSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVG 165
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDD 369
+P + F++ + AV+ G+ + +AGNGGP T S SPW+ +VAA+ D
Sbjct: 166 GANP----RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221
Query: 370 RRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNK 429
R++ + +GNG+ G+ ++ T N+ + LV+ D+ ++ K ++ C V N
Sbjct: 222 RKFVTQVQIGNGQSFQGVSIN--TFDNQYYPLVSGRDIP-NTGFDKSTSRFCTDKSV-NP 277
Query: 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPG 489
NL++G I++C SF E KSL A VL N P+P
Sbjct: 278 NLLKGKIVVCEASFG----------PHEFFKSLDGAAGVLMTSNTRDYADSYPLP----- 322
Query: 490 ILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGP 549
+ V DL+ +T R + S + G IL+ SAP V FS+RGP
Sbjct: 323 ---SSVLDPNDLL-----ATLR----YIYSIRSPGATIFKSTTILNASAPVVVSFSSRGP 370
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAW---SPNGTDEANFVGEGFALISGTSMAAPHIA 606
N D++KPDI PG I AAW +P G N + F +ISGTSM+ PHI
Sbjct: 371 N-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL---FNIISGTSMSCPHIT 422
Query: 607 GIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSG 666
GIA VK +P WSPAAIKSALMTT + P+ A+ + E F YGSG
Sbjct: 423 GIATYVKTYNPTWSPAAIKSALMTTAS-------PMNARFNPQAE---------FAYGSG 466
Query: 667 HVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTN--QPCNY-SMGHPYNFNTP 723
HVNP A+ PGL++DA DY+ FLC G + +R T C + G ++ N P
Sbjct: 467 HVNPLKAVRPGLVYDANESDYVKFLCGQ-GYNTQAVRRITGDYSACTSGNTGRVWDLNYP 525
Query: 724 SITVA---HLVKTQVVTRTVTNVA-EEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFT 779
S ++ Q RT+T+VA + TY + I VNP ++ RK +
Sbjct: 526 SFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK-S 584
Query: 780 VTLTVR 785
TLTVR
Sbjct: 585 FTLTVR 590
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 231/705 (32%), Positives = 331/705 (46%), Gaps = 87/705 (12%)
Query: 130 TTHTPEFLGL--PTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPK- 186
TTHT +FL L +G+WP G G+D+++ +DSGI+P SF D +PK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASF---QDDGMPEIPKR 53
Query: 187 YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAA 246
++G C+ S CN K+IG + S D DGHG+H A+I A
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN-ITMNSARDTDGHGTHCASITA 112
Query: 247 GNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSL 306
GN V G+ G A G+APRAR+AVYK + G F GVD++S+
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISI 171
Query: 307 SVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366
S G P + + + A+ GV V+ +AGN GP +L + SPWI VA+
Sbjct: 172 SYGYRFIP-----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 367 IDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVM-KYSASDCQRPE 425
DR + L LGNG + G L PA R F + DS V+ + SDC E
Sbjct: 227 HTDRTFAGTLTLGNGLKIRGWSLFPA----RAF--------VRDSPVIYNKTLSDCSSEE 274
Query: 426 VLNK-NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVP 484
+L++ E I++C + +F I T L AA F+ + PG F
Sbjct: 275 LLSQVENPENTIVICDDNGDFSDQMRII-----TRARLKAAIFI----SEDPGV-FRSAT 324
Query: 485 VGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544
PG+++ + + +++Y S T T TI + K AP VA
Sbjct: 325 FPNPGVVV-NKKEGKQVINYVKNSVTP-----------TATITFQETYLDTKPAPVVAAS 372
Query: 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN------GTDEANFVGEGFALISGT 598
SARGP S + KPDILAPG LI AA+ PN GT+ + + L SGT
Sbjct: 373 SARGP-----SRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNI--LLSTDYILESGT 425
Query: 599 SMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTA 658
SMAAPH AGIAA++K HP WSP+AI+SA+MTT LD +P++ ++ A
Sbjct: 426 SMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK-------AA 478
Query: 659 TPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPY 718
TP D G+GHV+P ALDPGL++DA +DY+ LC+ + + +++ +P
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL-NFTEEQFKTIARSSASHNCSNPS 537
Query: 719 -NFNTPSITVAHLVK------TQVVTRTVTNVAE-EETYSMSARMQPAIAIEVNPPAMTL 770
+ N PS + ++ Q RTVTNV + TY + I V+P +
Sbjct: 538 ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVF 597
Query: 771 KPGASRKFTVTLTVRSVTG---TYSFGEICMKGSRG-HKVNIPVI 811
K + K + TLT+R + + + G I G H V P++
Sbjct: 598 K-NKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAP 603
FS+RGP + LKP+++APG+ I AA +GT + + + GT+MA P
Sbjct: 312 FSSRGPTADN-------RLKPEVVAPGNWIIAA-RASGTSMGQPINDYYTAAPGTAMATP 363
Query: 604 HIAGIAALVKQKHPYWSPAAIKSALMTT 631
H+AGIAAL+ Q HP W+P +K+AL+ T
Sbjct: 364 HVAGIAALLLQAHPSWTPDKVKTALIET 391
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 20/138 (14%)
Query: 226 VDFA----SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL 281
VDF +P D +GHG+H A+IAAG G+ GMAP A++ K L
Sbjct: 165 VDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ 217
Query: 282 FGG----FXXXXXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGV 337
G G+ +++LS+G + T + + A AG+
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDS-----LSQAVNNAWDAGL 272
Query: 338 FVAQAAGNGGPFPKTLVS 355
V AAGN GP T+ S
Sbjct: 273 VVVVAAGNSGPNKYTVGS 290
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG IW+ G + S
Sbjct: 170 SSNQRASFSSVGPEL-------------DVMAPGVSIWS----------TLPGNKYGAKS 206
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GT MA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 207 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 245
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I ++ G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSI----------QSTLPGNKYGAKS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG+A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGVA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATGL 251
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTSMA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLQNTTTKL 257
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTSMA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLQNTTTKL 257
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTSMA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTSMA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTSMA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSI----------XSTLPGNKYGAYS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + SGT MA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L GG
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGGGSNSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I ++ G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSI----------QSTLPGNKYGAYS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GT MA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 23/102 (22%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 173 SSNQRASFSSVGPEL-------------DVMAPGVSICS----------TLPGNKYGAKS 209
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRA 638
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL +
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 173 SSNQRASFSSVGPEL-------------DVMAPGVSICS----------TLPGNKYGAKS 209
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSICS----------TLPGNKYGAKS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I ++ G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSI----------QSTLPGNKYGAKS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GT MA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSICS----------TLPGNKYGAKS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GT MA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GT MA+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GT MA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTXMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GT MA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTXMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GT MA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTXMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA +N I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GT MA PH+AG A
Sbjct: 179 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTXMATPHVAGAA 225
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 226 ALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA +N I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 152 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 189
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I + G + SGT+MA+PH+AG AAL+ KHP W+ ++S
Sbjct: 190 MAPGVSI----------VSTLPGNKYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRS 239
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 240 SLENTTTKL 248
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 152 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 189
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I + G + SGT+MA+PH+AG AAL+ KHP W+ ++S
Sbjct: 190 MAPGVSI----------VSTLPGNKYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRS 239
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 240 SLENTTTKL 248
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 173 SSNQRASFSSVGPEL-------------DVMAPGVSICS----------TLPGNKYGAKS 209
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GT MA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 210 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 248
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDI 566
+S+T + G+ S G + S+ Q A FS+ GP + D+
Sbjct: 161 SSSTVGYPGKYPSVIAVGAV---------DSSNQRASFSSVGPEL-------------DV 198
Query: 567 LAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
+APG I ++ G + +GTS A+PH+AG AAL+ KHP W+ ++S
Sbjct: 199 MAPGVSI----------QSTLPGNKYGAYNGTSXASPHVAGAAALILSKHPNWTNTQVRS 248
Query: 627 ALMTTTTKL 635
+L TTTKL
Sbjct: 249 SLENTTTKL 257
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + S
Sbjct: 182 SSNQRASFSSVGPEL-------------DVMAPGVSI----------XSTLPGNKYGAYS 218
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTT L
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYL 257
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + +S
Sbjct: 173 SSNQRAPFSSVGPEL-------------DVMAPGVSICS----------TLPGGKYGALS 209
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L T TKL
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKL 248
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I + G + +S
Sbjct: 173 SSNQRAPFSSVGPEL-------------DVMAPGVSICS----------TLPGGKYGALS 209
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GT+MA+PH+AG AAL+ KHP W+ ++S+L T TKL
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKL 248
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 530 LMPILHKSAPQVALFSARG--PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANF 587
L + +VA +S+RG D+ Q+ D+ +I APGS +++ W NG
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTW-YNG------ 241
Query: 588 VGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
G+ ISGTSMA PH++G+AA + ++P S ++S L +D
Sbjct: 242 ---GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 184 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 231 ALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 184 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 231 ALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 185 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 231
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 232 ALILSKHPNLSASQVRNRLSSTATYL 257
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 185 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 231
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 232 ALILSKHPNLSASQVRNRLSSTATYL 257
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 184 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 231 ALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GTSMA+PH+AG A
Sbjct: 184 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 231 ALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 15/99 (15%)
Query: 540 QVALFSARG--PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISG 597
+VA FS+RG D+ Q D+ +I APG+ +++ W F G G+A ISG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDV---EISAPGAAVYSTW---------FDG-GYATISG 247
Query: 598 TSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
TSMA+PH AG+AA + + P S ++ L T + D
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 45/138 (32%)
Query: 536 KSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALI 595
SA Q A FS+ G + D++APG I + P GT +
Sbjct: 181 NSANQRASFSSAGSEL-------------DVMAPGVSIQSTL-PGGT---------YGAY 217
Query: 596 SGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
+GTSMA PH+AG AAL+ KHP W+ A ++ L +T T L
Sbjct: 218 NGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL-------------------- 257
Query: 656 VTATPFDYGSGHVNPRAA 673
+ F YG G +N +AA
Sbjct: 258 --GSSFYYGKGLINVQAA 273
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G+AP A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 530 LMPILHKSAPQVALFSARG--PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANF 587
L + +VA +S+RG D+ Q+ D+ +I APGS +++ W NG
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTW-YNG------ 241
Query: 588 VGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
G+ ISGT MA PH++G+AA + ++P S ++S L +D
Sbjct: 242 ---GYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A+L +++APG+ +++ + N +A ++GT MA+PH+AG A
Sbjct: 184 NRASFSSVGAEL---EVMAPGAGVYSTYPTNT----------YATLNGTXMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ KHP S + +++ L +T T L
Sbjct: 231 ALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI APGS I ++W + + ISGTSMA+PH+AG+AAL ++P SPA +
Sbjct: 198 DIYAPGSSITSSWYTSNS--------ATNTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 625 KSALMTTTT 633
+ L T T
Sbjct: 250 TNLLKTRAT 258
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 35/121 (28%)
Query: 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
FS ++L D++APG I + P GT + +GT MA PH+AG AAL+
Sbjct: 188 SFSSAGSEL---DVMAPGVSIQSTL-PGGT---------YGAYNGTCMATPHVAGAAALI 234
Query: 613 KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRA 672
KHP W+ A ++ L +T T L + F YG G +N +A
Sbjct: 235 LSKHPTWTNAQVRDRLESTATYLGNS----------------------FYYGKGLINVQA 272
Query: 673 A 673
A
Sbjct: 273 A 273
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G++P A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVSPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK 351
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEGSSGS 161
Query: 352 T 352
T
Sbjct: 162 T 162
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D++APG I + P GT + +GT MA PH+AG AAL+ KHP W+ A +
Sbjct: 197 DVMAPGVSIQSTL-PGGT---------YGAYNGTXMATPHVAGAAALILSKHPTWTNAQV 246
Query: 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAA 673
+ L +T T L + F YG G +N +AA
Sbjct: 247 RDRLESTATYLGNS----------------------FYYGKGLINVQAA 273
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G+AP A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG+ I +AW + T ++GTSMA PH+AG+AAL +++P +PA++
Sbjct: 196 DLFAPGASIPSAWYTSDT--------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASV 247
Query: 625 KSALMTTTT 633
SA++ T
Sbjct: 248 ASAILNGAT 256
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS ++L +++APG +++ + P+ T + ++GTSMA+PH+AG A
Sbjct: 184 NRASFSSVGSEL---EVMAPGVSVYSTY-PSNT---------YTSLNGTSMASPHVAGAA 230
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
AL+ K+P S + +++ L +T T L
Sbjct: 231 ALILSKYPTLSASQVRNRLSSTATNL 256
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG+GHG+H A +AA +N V G+AP + K L G
Sbjct: 59 DGNGHGTHVAGTVAALDNTTGVL----------GVAPNVSLYAIKVLNSSGSGSYSAIVS 108
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+D++++S+G P +T + A +G+ V AAGN G
Sbjct: 109 GIEWATQNGLDVINMSLG--GPSGST------ALKQAVDKAYASGIVVVAAAGNSG 156
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 22/115 (19%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621
+KPDI APG I ++ + N +A +SGTSM+AP +AGI L+++++ P
Sbjct: 389 IKPDIAAPGQDILSSVANNK----------YAKLSGTSMSAPLVAGIMGLLQKQYETQYP 438
Query: 622 AAIKSALMTTTTKLDRASRPLQAQQ---YSETEAMKLVTATPFDYGSGHVNPRAA 673
MT + +LD A + L + Y E E +P G+G V+ + A
Sbjct: 439 D------MTPSERLDLAKKVLMSSATALYDEDEKAYF---SPRQQGAGAVDAKKA 484
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APGS I +AW G + ISGTSMA PH+AG+AAL Q++ +P +
Sbjct: 196 DLFAPGSQIKSAWYDGG----------YKTISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 625 KSALMTTTTK 634
L + ++
Sbjct: 246 TGLLNSRASE 255
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWS---PNGTDEANFVGEGFALIS 596
VA FS+RGP KD +KPD++APG+ I +A S P+ + AN + +A +
Sbjct: 201 HVAQFSSRGP-TKD------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-YAYMG 252
Query: 597 GTSMAAPHIAGIAA-----LVKQKHPYWSPAAIKSALM 629
GTSMA P +AG A VK + P+ +K+AL+
Sbjct: 253 GTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALI 290
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 582 TDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRP 641
T +N + + +GTSMA PH++G+A LV HP S + +++AL T L A R
Sbjct: 352 TTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD 411
Query: 642 LQ 643
Q
Sbjct: 412 NQ 413
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 588 VGEGFALISGTSMAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTT----KLDRA 638
V + ++ ++GTSMA PH++G+AALV + +PA +K L++TT+ +LDRA
Sbjct: 265 VSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA 323
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 588 VGEGFALISGTSMAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTT----KLDRA 638
V + ++ ++GTSMA PH++G+AALV + +PA +K L++TT+ +LDRA
Sbjct: 265 VSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA 323
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 588 VGEGFALISGTSMAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTT----KLDRA 638
V + ++ ++GTSMA PH++G+AALV + +PA +K L++TT+ +LDRA
Sbjct: 265 VSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA 323
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 586 NFVGEGFALISGTSMAAPHIAGIAAL----VKQKHPYWSPAAIKSALMTTTTKL 635
F L +GTS AAPH+AG AL +KQ++ +SP +IK A+ T TKL
Sbjct: 449 QFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621
+KPDI APG I ++ + N +A +SGTS +AP +AGI L+++++ P
Sbjct: 380 IKPDIAAPGQDILSSVANNK----------YAKLSGTSXSAPLVAGIXGLLQKQYETQYP 429
Query: 622 AAIKSALMTTTTKLDRASRPLQAQQ---YSETEAMKLVTATPFDYGSGHVNPRAA 673
T + +LD A + L + Y E E +P G+G V+ + A
Sbjct: 430 D------XTPSERLDLAKKVLXSSATALYDEDEKAYF---SPRQQGAGAVDAKKA 475
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 16/98 (16%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWS---PNGTDEANFVGEGFALIS 596
VA FS+RGP KD +KPD++APG+ I +A S P+ + AN + +A
Sbjct: 201 HVAQFSSRGP-TKD------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-YAYXG 252
Query: 597 GTSMAAPHIAGIAA-----LVKQKHPYWSPAAIKSALM 629
GTS A P +AG A VK + P+ +K+AL+
Sbjct: 253 GTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALI 290
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APGS I++ + P T +A +SGTSMA PH+AG+A L+ + S + I
Sbjct: 201 DVAAPGSWIYSTY-PTST---------YASLSGTSMATPHVAGVAGLLASQGR--SASNI 248
Query: 625 KSALMTTTTKL 635
++A+ T K+
Sbjct: 249 RAAIENTADKI 259
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 229 ASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFX 286
++P +G+GHG+H A IAA NN + +G AP+A I + L G
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGI----------AGTAPKASILAVRVLDNSGSGTW 112
Query: 287 XXXXXXXXXXXXXGVDILSLSVG 309
G ++SLS+G
Sbjct: 113 TAVANGITYAADQGAKVISLSLG 135
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APGS I++ + P T +A +SGTSMA PH+AG+A L+ + S + I
Sbjct: 201 DVAAPGSSIYSTY-PTST---------YASLSGTSMATPHVAGVAGLLASQGR--SASNI 248
Query: 625 KSALMTTTTKL 635
++A+ T K+
Sbjct: 249 RAAIENTADKI 259
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 229 ASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFX 286
++P +G+GHG+H A IAA NN + +G AP+A I + L G
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGI----------AGTAPKASILAVRVLDNSGSGTW 112
Query: 287 XXXXXXXXXXXXXGVDILSLSVG 309
G ++SLS+G
Sbjct: 113 TAVANGITYAADQGAKVISLSLG 135
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 231 PLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
P+D + HG+H A IAA NN + +GMAP RI +AL R G
Sbjct: 66 PMDLNNHGTHVAGIAAAETNNATGI----------AGMAPNTRILAVRALDRNGSGTLSD 115
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G ++++LS+G + TT N + A G V AAGN G
Sbjct: 116 IADAIIYAADSGAEVINLSLGCDCH----TTTLENAVNY----AWNKGSVVVAAAGNNG 166
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D++APG I + G +A +SGTSMA+PH+AG+AAL+ + + I
Sbjct: 202 DVVAPGVDI----------VSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEI 249
Query: 625 KSALMTTTTKL 635
+ A+ T K+
Sbjct: 250 RQAIEQTADKI 260
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S P V A + SF + L DI APGS I + W +G IS
Sbjct: 176 SEPTVCTVGATTSSDARSSFSNYGNLV-DIFAPGSNILSTW----------IGGTTNTIS 224
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTK 634
GTSMA PHI G+ A + + A+ + T +TK
Sbjct: 225 GTSMATPHIVGLGAYLAGLEGFPGAQALCKRIQTLSTK 262
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DI APG+ I + W +G ISGTSMA PHIAG+AA +
Sbjct: 201 DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYL 238
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 551 IKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610
+ DF+ + ++ DI+APG I ++ ++ G+A +SGT+MAAPH+AG A
Sbjct: 215 LSDFTNTNEEI---DIVAPGVGI----------KSTYLDSGYAELSGTAMAAPHVAGALA 261
Query: 611 LV 612
L+
Sbjct: 262 LI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 551 IKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610
+ DF+ + ++ DI+APG I ++ ++ G+A +SGT+MAAPH+AG A
Sbjct: 215 LSDFTNTNEEI---DIVAPGVGI----------KSTYLDSGYAELSGTAMAAPHVAGALA 261
Query: 611 LV 612
L+
Sbjct: 262 LI 263
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 551 IKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610
+ DF+ + ++ DI+APG I ++ ++ G+A +SGT+MAAPH+AG A
Sbjct: 215 LSDFTNTNEEI---DIVAPGVGI----------KSTYLDSGYAELSGTAMAAPHVAGALA 261
Query: 611 LV 612
L+
Sbjct: 262 LI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 551 IKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610
+ DF+ + ++ DI+APG I ++ ++ G+A +SGT+MAAPH+AG A
Sbjct: 197 LSDFTNTNEEI---DIVAPGVGI----------KSTYLDSGYAELSGTAMAAPHVAGALA 243
Query: 611 LV 612
L+
Sbjct: 244 LI 245
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DI PG+ I + W +G ISGTSMA PH+AG+AA +
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DI PG+ I + W +G ISGTSMA PH+AG+AA +
Sbjct: 200 DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 589 GEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631
G + GTSMAAPH+ G+ A++ QK P P I+ L T
Sbjct: 371 GGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENT 413
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 69 LEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128
+++ +D + L + Y + + LI V PD +I R PG+ S RD+
Sbjct: 74 VKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKI--RKPGLNSTARDYG-EE 130
Query: 129 LTTHT--PEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGP 183
L+ E +G+ +W + +G +I++ VD+G+ HP Y P
Sbjct: 131 LSNELWGLEAIGVTQQLWE-----EASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRP 182
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DI PG+ I + W +G ISGTSMA PH+AG+AA +
Sbjct: 200 DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYL 237
>pdb|1ZTY|A Chain A, Crystal Structure Of The Chitin Oligasaccharide Binding
Protein
pdb|1ZU0|A Chain A, Crystal Structure Of The Liganded Chitin Oligasaccharide
Binding Protein
Length = 529
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 58/160 (36%), Gaps = 20/160 (12%)
Query: 519 SFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLK-PDILAPGSLIWAAW 577
+F +G G ++ PQ+ + R PN D + + D L+ P I L+
Sbjct: 153 TFTNENPVGTGPFTVIDTFTPQLYI-QCRNPNYWDAANLEVDCLRVPQIANNDQLL---- 207
Query: 578 SPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDR 637
V + + TS P I A H YW PAA A M D
Sbjct: 208 -------GKIVN---SELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDP 257
Query: 638 ASRP-LQAQQYSETEAMKLVTATPFD---YGSGHVNPRAA 673
A + L + +M L T D YGSG VN A+
Sbjct: 258 AKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFAS 297
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 584 EANFVGEGFALISGTSMAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTTKLD-RA 638
+A V + + +GTSMAAPH++G+AALV +P+ + L+ TT++ + R
Sbjct: 262 QAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRL 321
Query: 639 SRPLQAQQYSETEAMKLV 656
R L + A+ V
Sbjct: 322 DRGLGSGIVDANAAVNAV 339
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 584 EANFVGEGFALISGTSMAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTTKLD-RA 638
+A V + + +GTSMAAPH++G+AALV +P+ + L+ TT++ + R
Sbjct: 262 QAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRL 321
Query: 639 SRPLQAQQYSETEAMKLV 656
R L + A+ V
Sbjct: 322 DRGLGSGIVDANAAVNAV 339
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DFS K ILAPG I A PNG G +SGTS A P ++G+AAL+
Sbjct: 188 DFSNWGDAYQKQGILAPGKDILGA-KPNG---------GTIRLSGTSFATPIVSGVAALL 237
Query: 613 K----QKHPYWSPAAIKSALMTTTT 633
++ P +K+AL+ + T
Sbjct: 238 LSLQIKRGEKPDPQKVKNALLASAT 262
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAAL-- 611
FS + K ILAPG I A E ++GTSMAAP + GI+AL
Sbjct: 238 FSNWGGNNTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPVMTGISALLM 288
Query: 612 ---VKQKHPYWSPAAIKSALMTTTTKLD 636
V+Q P A+++AL+ T D
Sbjct: 289 SLQVQQGKPV-DAEAVRTALLKTAIPCD 315
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAAL-- 611
FS + K ILAPG I A E ++GTSMAAP + GI+AL
Sbjct: 256 FSNWGGNNTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPVMTGISALLM 306
Query: 612 ---VKQKHPYWSPAAIKSALMTTTTKLD 636
V+Q P A+++AL+ T D
Sbjct: 307 SLQVQQGKPV-DAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAAL-- 611
FS + K ILAPG I A E ++GTSMAAP + GI+AL
Sbjct: 256 FSNWGGNNTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPVMTGISALLM 306
Query: 612 ---VKQKHPYWSPAAIKSALMTTTTKLD 636
V+Q P A+++AL+ T D
Sbjct: 307 SLQVQQGKPV-DAEAVRTALLKTAIPCD 333
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DFS + + ILAPG I A GT+ +SGTS A P ++G+AAL+
Sbjct: 194 DFSNWGSTYEQQGILAPGEDILGAKPGGGTER----------LSGTSFATPIVSGVAALL 243
Query: 613 KQKHPYW----SPAAIKSALMTTTTKLDRASRPLQAQQ 646
+ P ++ L+ + D + P QA++
Sbjct: 244 LSEQVRRGETPDPQKVRQLLLQSALPCDDDA-PEQARR 280
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DFS + + ILAPG I A GT+ +SGTS A P ++G+AAL+
Sbjct: 185 DFSNWGSTYEQQGILAPGEDILGAKPGGGTER----------LSGTSFATPIVSGVAALL 234
Query: 613 KQKHPYW----SPAAIKSALMTTTTKLDRASRPLQAQQ 646
+ P ++ L+ + D + P QA++
Sbjct: 235 LSEQVRRGETPDPQKVRQLLLQSALPCDDDA-PEQARR 271
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 212 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 256
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 257 ALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 210 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 254
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 255 ALIQAAY 261
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 594 LISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAM 653
+++GTS A P +G AL+ +P S ++ L + T++D +P+ S T +
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKV 390
Query: 654 KLV 656
+ V
Sbjct: 391 RDV 393
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 290 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 334
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 335 ALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 290 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 334
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 335 ALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 290 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 334
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 335 ALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 287 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 331
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 332 ALIQAAY 338
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 290 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 334
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 335 ALIQAAY 341
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 221 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 265
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 266 ALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT+MA PH++G+
Sbjct: 221 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTAMATPHVSGVV 265
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 266 ALIQAAY 272
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT MA PH++G+
Sbjct: 210 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTCMATPHVSGVV 254
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 255 ALIQAAY 261
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 15/67 (22%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
NI FS + +P++ APG I + + P+ + + + GT MA PH++G+
Sbjct: 210 NIASFSNR-----QPEVSAPGVDILSTY-PD---------DSYETLMGTXMATPHVSGVV 254
Query: 610 ALVKQKH 616
AL++ +
Sbjct: 255 ALIQAAY 261
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612
DFS + + ILAPG I A GT+ +SGT+ A P ++G+AAL+
Sbjct: 175 DFSNWGSTYEQQGILAPGEDILGAKPGGGTER----------LSGTAFATPIVSGVAALL 224
Query: 613 KQKHPYW----SPAAIKSALMTTTTKLDRASRPLQAQQ 646
+ P ++ L+ + D + P QA++
Sbjct: 225 LSEQVRRGETPDPQKVRQLLLQSALPCDDDA-PEQARR 261
>pdb|2FS5|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FS5|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Apo Form
pdb|2FT0|A Chain A, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
pdb|2FT0|B Chain B, Crystal Structure Of Tdp-Fucosamine Acetyltransferase
(Wecd)- Complex With Acetyl-Coa
Length = 235
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 558 DADLLKPDILAPGSLIWAAWSPNGTDEANFVGE-GFALISG-TSMAAP--HIAGIAALVK 613
+A LL PD LAP S + A + + T E + + + GF+L+ G +A P +++ A+V
Sbjct: 40 EAPLLTPDALAPWSRVQAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVA 99
Query: 614 QK 615
Q+
Sbjct: 100 QE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,141,550
Number of Sequences: 62578
Number of extensions: 1085684
Number of successful extensions: 2516
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 242
length of query: 817
length of database: 14,973,337
effective HSP length: 107
effective length of query: 710
effective length of database: 8,277,491
effective search space: 5877018610
effective search space used: 5877018610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)