Query 003470
Match_columns 817
No_of_seqs 420 out of 3137
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 8.3E-52 1.8E-56 447.2 30.2 306 126-633 1-307 (307)
2 cd07478 Peptidases_S8_CspA-lik 100.0 5.1E-50 1.1E-54 450.1 31.6 430 152-666 1-455 (455)
3 PTZ00262 subtilisin-like prote 100.0 1.7E-50 3.8E-55 451.7 23.1 288 151-679 312-617 (639)
4 cd07497 Peptidases_S8_14 Pepti 100.0 8.6E-50 1.9E-54 426.9 24.4 292 154-632 1-311 (311)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 3.6E-49 7.7E-54 413.4 22.5 245 151-636 4-254 (255)
6 cd05562 Peptidases_S53_like Pe 100.0 1.8E-48 4E-53 410.8 22.4 271 151-675 1-274 (275)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.5E-47 3.2E-52 422.0 26.9 315 143-675 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 2.4E-47 5.1E-52 413.6 25.5 296 142-680 4-303 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 2.6E-46 5.6E-51 393.5 23.4 250 143-639 2-256 (267)
10 cd07483 Peptidases_S8_Subtilis 100.0 9.7E-46 2.1E-50 395.4 23.4 269 155-633 1-291 (291)
11 cd05561 Peptidases_S8_4 Peptid 100.0 9.6E-46 2.1E-50 384.0 22.6 227 157-639 1-231 (239)
12 cd07474 Peptidases_S8_subtilis 100.0 2.7E-45 5.9E-50 395.2 26.7 289 154-673 1-295 (295)
13 cd07493 Peptidases_S8_9 Peptid 100.0 9.8E-45 2.1E-49 383.1 24.7 248 156-633 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1E-44 2.2E-49 383.4 24.4 247 154-633 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 5E-45 1.1E-49 379.2 19.8 336 19-633 77-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 7.1E-44 1.5E-48 387.6 25.2 221 232-635 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.9E-43 4.1E-48 374.7 25.9 258 154-633 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 3.3E-43 7.2E-48 373.8 24.9 262 143-631 2-273 (273)
19 cd04847 Peptidases_S8_Subtilis 100.0 1.9E-43 4.2E-48 379.2 19.8 262 158-633 2-291 (291)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.4E-42 3.1E-47 365.6 23.4 229 151-634 21-255 (255)
21 cd07496 Peptidases_S8_13 Pepti 100.0 1E-42 2.2E-47 372.5 22.0 265 156-631 1-285 (285)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.6E-42 7.7E-47 362.7 23.1 253 156-633 1-254 (254)
23 cd07484 Peptidases_S8_Thermita 100.0 3.5E-42 7.7E-47 363.8 23.0 240 142-635 20-259 (260)
24 cd07494 Peptidases_S8_10 Pepti 100.0 6.8E-42 1.5E-46 365.4 24.3 157 142-367 12-173 (298)
25 cd07480 Peptidases_S8_12 Pepti 100.0 4.4E-42 9.5E-47 369.4 21.6 148 151-350 4-172 (297)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 1.6E-41 3.5E-46 365.5 24.8 278 150-633 2-293 (293)
27 cd07498 Peptidases_S8_15 Pepti 100.0 7.5E-42 1.6E-46 357.4 21.2 241 157-631 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 1.3E-41 2.9E-46 359.0 21.6 249 142-633 6-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 1.3E-40 2.7E-45 351.9 24.4 250 155-633 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 8.3E-41 1.8E-45 346.7 22.2 227 156-631 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 3.3E-41 7.3E-46 350.3 19.0 160 154-367 2-170 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 2.1E-40 4.6E-45 357.1 20.7 156 156-350 1-159 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 6.5E-41 1.4E-45 358.9 14.0 276 158-675 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 1.5E-39 3.2E-44 335.3 21.3 150 156-366 1-150 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 1.8E-39 3.8E-44 350.2 18.2 250 142-633 30-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 1.8E-38 3.8E-43 337.2 21.2 248 153-633 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.4E-36 3.1E-41 323.6 8.9 263 151-675 197-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 2.1E-33 4.6E-38 312.2 22.2 364 234-813 309-687 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 5.3E-33 1.1E-37 287.7 15.4 118 231-367 33-159 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 7.1E-31 1.5E-35 273.5 21.7 123 230-367 39-166 (241)
41 COG1404 AprE Subtilisin-like s 99.9 7.5E-24 1.6E-28 245.3 22.1 243 151-634 138-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.3E-19 4.9E-24 182.8 11.6 154 142-349 152-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.7E-17 5.8E-22 181.1 14.2 102 262-369 82-197 (361)
44 PF06280 DUF1034: Fn3-like dom 99.3 5.9E-11 1.3E-15 108.0 12.9 86 726-811 2-112 (112)
45 PF05922 Inhibitor_I9: Peptida 98.8 3.4E-08 7.4E-13 84.4 9.5 47 83-129 36-82 (82)
46 cd02133 PA_C5a_like PA_C5a_lik 98.7 2E-07 4.4E-12 88.7 12.5 104 425-551 39-142 (143)
47 cd02120 PA_subtilisin_like PA_ 98.6 8.5E-07 1.8E-11 82.6 12.4 117 376-508 2-119 (126)
48 COG4934 Predicted protease [Po 98.2 2.4E-05 5.3E-10 93.9 16.4 99 263-365 288-395 (1174)
49 PF02225 PA: PA domain; Inter 98.0 1.5E-05 3.3E-10 70.9 7.4 75 424-505 24-101 (101)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.0 3.5E-05 7.6E-10 69.9 9.2 82 419-508 31-115 (120)
51 KOG3525 Subtilisin-like propro 98.0 3.3E-05 7.2E-10 86.2 10.7 158 142-351 24-189 (431)
52 cd02127 PA_hPAP21_like PA_hPAP 97.9 4.6E-05 1E-09 69.5 8.6 82 418-508 21-109 (118)
53 cd04817 PA_VapT_like PA_VapT_l 97.8 5.5E-05 1.2E-09 70.7 7.9 75 426-507 49-133 (139)
54 cd04816 PA_SaNapH_like PA_SaNa 97.8 0.00013 2.7E-09 67.5 8.8 83 418-508 29-115 (122)
55 cd02122 PA_GRAIL_like PA _GRAI 97.7 0.00017 3.7E-09 67.7 9.5 84 417-507 43-130 (138)
56 cd04813 PA_1 PA_1: Protease-as 97.7 0.00012 2.6E-09 66.6 8.1 81 417-507 26-111 (117)
57 cd02126 PA_EDEM3_like PA_EDEM3 97.7 0.00017 3.7E-09 66.9 8.5 82 418-508 27-119 (126)
58 cd02124 PA_PoS1_like PA_PoS1_l 97.6 0.00059 1.3E-08 63.4 11.6 82 417-507 40-121 (129)
59 cd02125 PA_VSR PA_VSR: Proteas 97.6 0.00024 5.3E-09 65.7 8.7 84 418-508 22-120 (127)
60 cd04818 PA_subtilisin_1 PA_sub 97.6 0.00032 6.9E-09 64.4 8.5 82 417-507 26-110 (118)
61 cd02132 PA_GO-like PA_GO-like: 97.5 0.00034 7.4E-09 66.1 8.6 79 418-507 48-131 (139)
62 cd02123 PA_C_RZF_like PA_C-RZF 97.5 0.00033 7.2E-09 67.2 8.4 84 418-508 50-140 (153)
63 cd02130 PA_ScAPY_like PA_ScAPY 97.5 0.0014 3.1E-08 60.5 11.8 81 419-508 32-115 (122)
64 cd00538 PA PA: Protease-associ 97.4 0.00054 1.2E-08 63.5 8.3 83 418-507 30-118 (126)
65 cd04819 PA_2 PA_2: Protease-as 97.1 0.0073 1.6E-07 56.1 12.0 75 426-507 37-119 (127)
66 PF14874 PapD-like: Flagellar- 96.3 0.12 2.6E-06 45.8 13.4 79 733-813 21-100 (102)
67 PF10633 NPCBM_assoc: NPCBM-as 95.7 0.038 8.2E-07 46.5 7.0 56 733-788 6-64 (78)
68 cd04815 PA_M28_2 PA_M28_2: Pro 94.9 0.095 2.1E-06 49.1 7.5 81 426-507 32-126 (134)
69 PF11614 FixG_C: IG-like fold 93.9 0.3 6.6E-06 44.6 8.4 54 735-788 34-88 (118)
70 PF06030 DUF916: Bacterial pro 93.9 0.44 9.5E-06 43.7 9.3 67 732-799 27-119 (121)
71 cd04814 PA_M28_1 PA_M28_1: Pro 93.4 0.33 7.2E-06 45.7 7.7 71 395-474 18-100 (142)
72 PF07718 Coatamer_beta_C: Coat 93.2 0.85 1.8E-05 42.4 9.9 65 736-800 73-139 (140)
73 cd02128 PA_TfR PA_TfR: Proteas 93.1 0.13 2.8E-06 50.5 4.7 39 429-473 51-89 (183)
74 cd04822 PA_M28_1_3 PA_M28_1_3: 93.1 0.52 1.1E-05 44.9 8.6 52 425-476 39-102 (151)
75 cd04820 PA_M28_1_1 PA_M28_1_1: 91.3 1.2 2.7E-05 41.6 8.7 51 425-475 41-97 (137)
76 cd02121 PA_GCPII_like PA_GCPII 90.4 0.74 1.6E-05 46.8 6.9 42 429-476 67-108 (220)
77 KOG2442 Uncharacterized conser 90.2 0.66 1.4E-05 51.2 6.6 68 429-503 91-163 (541)
78 cd02131 PA_hNAALADL2_like PA_h 90.1 0.39 8.4E-06 45.2 4.2 41 430-476 37-77 (153)
79 COG1470 Predicted membrane pro 89.2 2.3 4.9E-05 47.1 9.7 69 733-801 398-470 (513)
80 COG1470 Predicted membrane pro 85.5 10 0.00022 42.2 12.1 56 732-787 284-346 (513)
81 PF05506 DUF756: Domain of unk 83.8 16 0.00035 31.3 10.6 60 734-802 20-80 (89)
82 TIGR02745 ccoG_rdxA_fixG cytoc 82.9 6.9 0.00015 44.2 9.9 52 735-786 349-401 (434)
83 smart00635 BID_2 Bacterial Ig- 82.2 5.6 0.00012 33.5 7.0 45 760-807 4-48 (81)
84 KOG1114 Tripeptidyl peptidase 81.7 0.91 2E-05 53.9 2.4 24 151-174 77-100 (1304)
85 PF00345 PapD_N: Pili and flag 81.3 13 0.00028 33.9 9.7 65 735-800 17-90 (122)
86 PF07705 CARDB: CARDB; InterP 79.6 13 0.00027 32.2 8.7 51 732-785 19-72 (101)
87 KOG4628 Predicted E3 ubiquitin 78.3 4.1 8.9E-05 44.0 5.8 68 431-505 77-147 (348)
88 PF07610 DUF1573: Protein of u 73.3 12 0.00026 27.6 5.5 43 738-782 2-45 (45)
89 PF00635 Motile_Sperm: MSP (Ma 72.2 17 0.00038 32.1 7.6 51 734-786 20-71 (109)
90 PF14016 DUF4232: Protein of u 64.3 42 0.00091 31.1 8.7 77 733-810 19-112 (131)
91 PF02368 Big_2: Bacterial Ig-l 62.5 7.4 0.00016 32.5 2.9 43 760-806 4-46 (79)
92 cd04821 PA_M28_1_2 PA_M28_1_2: 58.7 20 0.00043 34.5 5.4 49 425-473 41-102 (157)
93 PF12690 BsuPI: Intracellular 56.6 67 0.0015 27.1 7.7 21 766-786 52-72 (82)
94 PRK15308 putative fimbrial pro 53.3 88 0.0019 32.2 9.4 63 736-800 35-114 (234)
95 PLN03080 Probable beta-xylosid 49.2 59 0.0013 40.0 8.6 76 734-809 686-778 (779)
96 PF13598 DUF4139: Domain of un 48.3 79 0.0017 34.1 8.8 52 734-785 244-314 (317)
97 KOG3920 Uncharacterized conser 48.0 19 0.00042 33.8 3.2 70 417-494 73-151 (193)
98 PF13956 Ibs_toxin: Toxin Ibs, 46.9 11 0.00023 21.8 0.9 15 3-17 1-15 (19)
99 KOG1058 Vesicle coat complex C 46.4 54 0.0012 38.9 7.2 62 739-800 741-804 (948)
100 PRK15098 beta-D-glucoside gluc 41.9 66 0.0014 39.5 7.6 53 733-786 668-729 (765)
101 PF08260 Kinin: Insect kinin p 41.4 12 0.00027 16.9 0.5 6 543-548 3-8 (8)
102 PF07233 DUF1425: Protein of u 41.0 2.4E+02 0.0051 24.5 8.9 51 731-781 23-79 (94)
103 KOG2018 Predicted dinucleotide 35.6 69 0.0015 34.0 5.3 80 263-343 137-244 (430)
104 TIGR00192 urease_beta urease, 34.9 95 0.0021 27.2 5.2 50 732-781 18-82 (101)
105 cd00407 Urease_beta Urease bet 33.0 1.1E+02 0.0025 26.8 5.4 49 732-781 18-82 (101)
106 PRK13203 ureB urease subunit b 32.5 1.1E+02 0.0024 26.9 5.2 49 732-781 18-82 (102)
107 PRK13202 ureB urease subunit b 32.4 1.1E+02 0.0024 26.9 5.2 47 734-781 21-83 (104)
108 PF00927 Transglut_C: Transglu 32.2 1.8E+02 0.0039 25.6 7.0 54 733-786 16-78 (107)
109 PF13157 DUF3992: Protein of u 30.9 1.7E+02 0.0038 25.3 6.2 33 766-798 54-90 (92)
110 PF14310 Fn3-like: Fibronectin 30.5 48 0.001 27.0 2.7 21 766-786 25-45 (71)
111 PRK09918 putative fimbrial cha 29.0 5.8E+02 0.013 26.2 11.0 66 734-800 40-110 (230)
112 PRK15019 CsdA-binding activato 28.8 54 0.0012 31.1 3.1 33 593-626 77-109 (147)
113 TIGR02231 conserved hypothetic 28.7 2.4E+02 0.0053 32.9 9.2 55 734-788 444-520 (525)
114 PF13940 Ldr_toxin: Toxin Ldr, 28.6 50 0.0011 22.5 1.9 13 600-612 14-26 (35)
115 PF02845 CUE: CUE domain; Int 28.0 55 0.0012 23.6 2.3 24 609-632 5-28 (42)
116 TIGR03391 FeS_syn_CsdE cystein 27.5 60 0.0013 30.5 3.1 34 593-627 72-105 (138)
117 PF05753 TRAP_beta: Translocon 26.4 4.4E+02 0.0096 26.0 9.1 55 732-786 38-99 (181)
118 PF08821 CGGC: CGGC domain; I 26.1 4E+02 0.0086 23.8 7.9 72 264-341 31-104 (107)
119 PF00553 CBM_2: Cellulose bind 25.4 4.5E+02 0.0097 22.9 8.2 26 736-761 17-44 (101)
120 PF00699 Urease_beta: Urease b 24.7 1.4E+02 0.003 26.2 4.5 49 732-781 17-81 (100)
121 PRK09296 cysteine desufuration 24.2 75 0.0016 29.9 3.1 32 594-626 68-99 (138)
122 PF08194 DIM: DIM protein; In 23.6 1.2E+02 0.0026 21.3 3.1 8 20-27 21-28 (36)
123 PRK13205 ureB urease subunit b 23.5 1.9E+02 0.004 27.4 5.4 51 732-782 18-83 (162)
124 PRK13201 ureB urease subunit b 23.3 2E+02 0.0044 26.5 5.5 51 732-782 18-83 (136)
125 COG0065 LeuC 3-isopropylmalate 23.0 91 0.002 34.4 3.8 60 538-612 354-413 (423)
126 cd09030 DUF1425 Putative perip 22.7 3.5E+02 0.0076 23.6 7.0 50 732-781 32-87 (101)
127 PF02657 SufE: Fe-S metabolism 22.7 87 0.0019 28.9 3.2 33 594-627 59-91 (125)
128 COG2166 sufE Cysteine desulfur 22.2 82 0.0018 29.7 2.9 33 593-626 72-104 (144)
129 PF08434 CLCA_N: Calcium-activ 21.5 3.2E+02 0.007 28.6 7.4 48 23-80 20-67 (262)
130 PRK13204 ureB urease subunit b 21.3 2.2E+02 0.0048 26.9 5.4 50 732-781 41-105 (159)
131 PF13620 CarboxypepD_reg: Carb 20.8 3.7E+02 0.0081 21.8 6.6 42 739-783 41-82 (82)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-52 Score=447.18 Aligned_cols=306 Identities=52% Similarity=0.849 Sum_probs=252.2
Q ss_pred eccccCCCCcccCCCCCCCCC-CCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCC
Q 003470 126 VRRLTTHTPEFLGLPTGVWPT-GGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNG 204 (817)
Q Consensus 126 ~~~~~~~s~~~~g~~~~~w~~-~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 204 (817)
++++++.++.+++++ ..|.. .+..+++|+||+|||||||||++||+|.+....++ ...|.+.|..+..+....+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPY--PHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCC--CCCCCCcccCCCCcCccCcCC
Confidence 356788899999976 67776 45568999999999999999999999998643332 127999999888777778999
Q ss_pred ceeeeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC
Q 003470 205 KIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG 284 (817)
Q Consensus 205 ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~ 284 (817)
|+++.++|.++.......+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++....+
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 99999999876443322233444567789999999999999998765544455556678999999999999999986678
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEe
Q 003470 285 FVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 364 (817)
Q Consensus 285 ~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVg 364 (817)
..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.++..||+++||
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP-----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 88999999999999999999999998653 1245678888899999999999999999987777888889999998
Q ss_pred eeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccc
Q 003470 365 AAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFN 444 (817)
Q Consensus 365 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~ 444 (817)
|+
T Consensus 233 a~------------------------------------------------------------------------------ 234 (307)
T cd04852 233 AS------------------------------------------------------------------------------ 234 (307)
T ss_pred ec------------------------------------------------------------------------------
Confidence 73
Q ss_pred cccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeee
Q 003470 445 FVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTG 524 (817)
Q Consensus 445 ~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 524 (817)
T Consensus 235 -------------------------------------------------------------------------------- 234 (307)
T cd04852 235 -------------------------------------------------------------------------------- 234 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHH
Q 003470 525 TIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPH 604 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 604 (817)
.+||||+|||.+|++++..............|..++|||||||+
T Consensus 235 ------------------------------------~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~ 278 (307)
T cd04852 235 ------------------------------------TLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPH 278 (307)
T ss_pred ------------------------------------cCccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHH
Confidence 13569999999999988643222222345689999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003470 605 IAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 605 VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
|||++|||+|++|+|+|.|||++|++||+
T Consensus 279 vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 279 VAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999995
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=5.1e-50 Score=450.13 Aligned_cols=430 Identities=23% Similarity=0.267 Sum_probs=242.9
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCC-CCCcccccCCCCCCccCCCceeeeeehhHHHH-hhccCCCCCCCC
Q 003470 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVP-KYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAI-AARAFNPAVDFA 229 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~-~~~~~~~~~~~~ 229 (817)
++|+||+||||||||||.||+|++.+ +-.++. .|++....+... ....++..|..... .......+.+..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~d--g~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNED--GTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCC--CCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence 48999999999999999999999763 334444 898876643321 11222222222111 111112223344
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC----------CCHHHHHHHHHHHHHc
Q 003470 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG----------GFVADVVAAIDQAVHD 299 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~----------~~~~di~~ai~~a~~~ 299 (817)
+..|+.||||||||||||+...+ ..+.||||+|+|+++|++...+. +..++++.||+|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 56789999999999999986421 25789999999999999987653 5678999999999974
Q ss_pred -----CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCCCccCCCCcEEEEeeeecCccee
Q 003470 300 -----GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYK 373 (817)
Q Consensus 300 -----g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~ 373 (817)
.+.|||||||++.++|++ .+.++++++.+..+ |++||+||||+|....|...... .. ...-.
T Consensus 145 a~~~~~p~VInlSlG~~~g~~~g----~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~-----~~~~~ 212 (455)
T cd07478 145 ALELNKPLVINISLGTNFGSHDG----TSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PN-----GETKT 212 (455)
T ss_pred HHHhCCCeEEEEccCcCCCCCCC----ccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cC-----CceEE
Confidence 478999999998888775 56788888888776 99999999999986555432100 00 00000
Q ss_pred eEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHH
Q 003470 374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK 453 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~ 453 (817)
..+.++.++....+.+...........++... .+............ ..+.......+|.+..+......|...+.
T Consensus 213 ie~~v~~~~~~~~~eiW~~~~d~~~v~i~sP~--Ge~~~~i~~~~~~~---~~~~~~~~~t~i~v~y~~~~~~~g~~~i~ 287 (455)
T cd07478 213 VELNVGEGEKGFNLEIWGDFPDRFSVSIISPS--GESSGRINPGIGGS---ESYKFVFEGTTVYVYYYLPEPYTGDQLIF 287 (455)
T ss_pred EEEEECCCCcceEEEEecCCCCEEEEEEECCC--CCccCccCcCCCcc---eeEEEEECCeEEEEEEcCCCCCCCCeEEE
Confidence 11122222111111111110000001111100 00000000000000 00000011112222211111122222222
Q ss_pred HHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHH-HhccCCcCCcceeEeeeeeeEecCCCcc
Q 003470 454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDY-YNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 454 ~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
..+.+ ...|-..+.++......+. +..++|.-.+.. ++..++..- ...-+.+.....++++++.
T Consensus 288 i~~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~-~~t~f~~~~~~~tit~Pa~~~~vitVga~--------- 352 (455)
T cd07478 288 IRFKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLS-ENTRFLEPDPYTTLTIPGTARSVITVGAY--------- 352 (455)
T ss_pred EEccC-CCccceEEEEEeccCCCce----EEEEecCcCcCC-CCCEeecCCCCceEecCCCCCCcEEEEEE---------
Confidence 22222 2234444555543322211 122233221111 000000000 0000000111122222221
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003470 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
+...+.++.||||||+.++ ++||||+|||++|+++.+ ++.|..++|||||||||||++|||
T Consensus 353 --~~~~~~~~~~Ss~G~~~~~-------~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap~vaG~aALl 413 (455)
T cd07478 353 --NQNNNSIAIFSGRGPTRDG-------RIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAAIVAGACALL 413 (455)
T ss_pred --eCCCCcccCccCCCcCCCC-------CcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHHHHHHHHHHH
Confidence 2233479999999999986 999999999999999984 568999999999999999999999
Q ss_pred HHhC------CCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCccccc
Q 003470 613 KQKH------PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSG 666 (817)
Q Consensus 613 ~q~~------p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G 666 (817)
+|++ |.|++++||++|++||+++.. ..+++++||||
T Consensus 414 ~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~GyG 455 (455)
T cd07478 414 LQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWGYG 455 (455)
T ss_pred HHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCCCC
Confidence 9975 557999999999999998742 24677899998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.7e-50 Score=451.73 Aligned_cols=288 Identities=19% Similarity=0.239 Sum_probs=207.7
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+.+|+||+|||||||||++||||.++-......+...++....+.++ -.-+.+++|++ +..+
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~------vdd~~G~nfVd------------~~~~ 373 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGN------VDDEYGANFVN------------NDGG 373 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCc------ccccccccccC------------CCCC
Confidence 46899999999999999999999976210000000000000000000 01123445543 2245
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
|.|++||||||||||||...++ .++.||||+|+|+++|+++..+.+..+++++||+||++.|++|||||||.
T Consensus 374 P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~ 445 (639)
T PTZ00262 374 PMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSF 445 (639)
T ss_pred CCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecccc
Confidence 6889999999999999974321 24789999999999999998777889999999999999999999999996
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--------------ccC----CCCcEEEEeeeecCcce
Q 003470 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--------------LVS----YSPWITTVAAAIDDRRY 372 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~~~~vitVgA~~~~~~~ 372 (817)
.. +...+..|+.+|.++|++||+||||+|..... +|+ ..++||+|||+..+.
T Consensus 446 ~~--------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 446 DE--------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred CC--------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 42 34568899999999999999999999864321 111 234566665532100
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003470 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003470 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003470 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
...-.++.||++|. .++||+|||++|+|+. +++.|..++|||||||||||+||||
T Consensus 516 ---~~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmAAP~VAGvAALL 570 (639)
T PTZ00262 516 ---NNQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMAAPHVAAIASLI 570 (639)
T ss_pred ---CCcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchhHHHHHHHHHHH
Confidence 00003445666652 2349999999999998 4568999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCee
Q 003470 613 KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLI 679 (817)
Q Consensus 613 ~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 679 (817)
++++|+|++.||+++|++||.++.... +...++|+||+++|++.++-
T Consensus 571 lS~~P~LT~~qV~~iL~~TA~~l~~~~--------------------n~~~wgG~LDa~kAV~~Ai~ 617 (639)
T PTZ00262 571 LSINPSLSYEEVIRILKESIVQLPSLK--------------------NKVKWGGYLDIHHAVNLAIA 617 (639)
T ss_pred HhhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCcEEcHHHHHHHHHh
Confidence 999999999999999999998764211 11223389999999986553
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-50 Score=426.93 Aligned_cols=292 Identities=29% Similarity=0.294 Sum_probs=192.6
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003470 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|||||||||++||||.++..- .|...++. ...+..+.++..+ ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~d~---------~~~~~~g~d~~~~-----------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKFDY---------KAYLLPGMDKWGG-----------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC------CcccccCc---------CCCccCCcCCCCC-----------ccCCCCC
Confidence 89999999999999999999865210 01000000 0112222222111 1134678
Q ss_pred CCCCCccchhhhccCCCcccccccc-CccceeeccCCCcEEEEEeeecCCCCCHHHHHH-------HHHHHH--HcCCcE
Q 003470 234 GDGHGSHTAAIAAGNNGIPVRMHGH-EFGRASGMAPRARIAVYKALYRLFGGFVADVVA-------AIDQAV--HDGVDI 303 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~-~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~-------ai~~a~--~~g~dV 303 (817)
++||||||||||||+.....+..++ +...+.||||+|+|+.+|++..........+.. +++|+. +++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 9999999999999975321110000 112578999999999999997543333222322 344443 679999
Q ss_pred EEecCCCCCCCCCCccCCCChHHHHHHHH-HHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCcceeeEEEeCC
Q 003470 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAA-VKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
||||||.............+..+.+++.+ .++|+++|+||||+|+... +.|+.++++|+|||++.....+...
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~---- 210 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL---- 210 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh----
Confidence 99999975432211011123344444433 3799999999999998643 4567889999999975321100000
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003470 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
+
T Consensus 211 --------------------~----------------------------------------------------------- 211 (311)
T cd07497 211 --------------------F----------------------------------------------------------- 211 (311)
T ss_pred --------------------h-----------------------------------------------------------
Confidence 0
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003470 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
.......+.
T Consensus 212 -----------------------------------------------------------------------~~~~~~~~~ 220 (311)
T cd07497 212 -----------------------------------------------------------------------GYLPGGSGD 220 (311)
T ss_pred -----------------------------------------------------------------------ccccCCCCC
Confidence 000011247
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC---
Q 003470 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP--- 617 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p--- 617 (817)
++.||||||+.++ ++||||+|||++|+++.+.............|..|+|||||||||||++|||+|++|
T Consensus 221 ~~~fSs~Gp~~~g-------~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~ 293 (311)
T cd07497 221 VVSWSSRGPSIAG-------DPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKE 293 (311)
T ss_pred ccccccCCCCccc-------CCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhc
Confidence 8999999999986 999999999999999876542211111234799999999999999999999999976
Q ss_pred ---CCCHHHHHHHHhccc
Q 003470 618 ---YWSPAAIKSALMTTT 632 (817)
Q Consensus 618 ---~ls~~~ik~~L~~TA 632 (817)
.++|++||++|++||
T Consensus 294 ~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 294 GVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=3.6e-49 Score=413.44 Aligned_cols=245 Identities=26% Similarity=0.393 Sum_probs=196.7
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||.+||+|.+.. ...+|.. ...
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~------------------------------~~~~~~~-------------~~~ 40 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVK------------------------------ERTNWTN-------------EKT 40 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhccc------------------------------cccccCC-------------CCC
Confidence 799999999999999999999998531 0011110 123
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|+.||||||||||+|+.. .+.||||+|+|+.+|++.+...+..++++++++||+++++||||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45788999999999999742 3589999999999999988766777889999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--ccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003470 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
... ...++.+++.++.++|++||+||||+|+...+ .++..+++|+|||++.
T Consensus 110 ~~~-------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 162 (255)
T cd07479 110 PDF-------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------------- 162 (255)
T ss_pred CCC-------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------------
Confidence 421 23567778888899999999999999975433 4667788999987521
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003470 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003470 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
.+.++.|||+|
T Consensus 163 ---------------------------------------------------------------------~~~~~~~S~~g 173 (255)
T cd07479 163 ---------------------------------------------------------------------DDNIARFSSRG 173 (255)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 12678899999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC----CCCHHHH
Q 003470 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP----YWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~i 624 (817)
++... -+...+++||||+|||.+|+++. ..+.|..++|||||||||||++|||+|++| .++|.+|
T Consensus 174 ~~~~~-~p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~v 242 (255)
T cd07479 174 MTTWE-LPGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASM 242 (255)
T ss_pred CCccc-ccCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHH
Confidence 65311 01112478999999999999876 345789999999999999999999999999 6899999
Q ss_pred HHHHhccccccc
Q 003470 625 KSALMTTTTKLD 636 (817)
Q Consensus 625 k~~L~~TA~~~~ 636 (817)
|++|++||+++.
T Consensus 243 k~~L~~sA~~~~ 254 (255)
T cd07479 243 KQALIESATRLP 254 (255)
T ss_pred HHHHHhhcccCC
Confidence 999999999864
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.8e-48 Score=410.80 Aligned_cols=271 Identities=26% Similarity=0.257 Sum_probs=201.8
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||.+||++.+.... ++.+...+.. ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-------------------------~l~~~~~~~~------------~~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-------------------------DLPGNVNVLG------------DLDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-------------------------CCCcceeecc------------ccCC
Confidence 47999999999999999998865432100 1111111100 0123
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|..+|||||||||+ ||||+|+|+.+|+. +..+++++||+||+++|++|||||||.
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4578899999999984 58999999998863 247789999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003470 311 NSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
...+. .....+..+++++.++ |++||+||||+|.... ..++..+++|+|||++.+.......
T Consensus 101 ~~~~~----~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------ 164 (275)
T cd05562 101 LNEPF----FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------ 164 (275)
T ss_pred cCCCc----ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------
Confidence 54321 1234678889989887 9999999999998543 3467899999999975332100000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003470 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
|.
T Consensus 165 --------------------------------~~---------------------------------------------- 166 (275)
T cd05562 165 --------------------------------DP---------------------------------------------- 166 (275)
T ss_pred --------------------------------cc----------------------------------------------
Confidence 00
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003470 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+ . .......+.||++|
T Consensus 167 --------~-----------------------------------~---------------------~~~~s~~~~~~~~~ 182 (275)
T cd05562 167 --------A-----------------------------------P---------------------GGTPSSFDPVGIRL 182 (275)
T ss_pred --------c-----------------------------------c---------------------CCCcccccCCcccC
Confidence 0 0 00011456688999
Q ss_pred CCCCCCCcCCccccCCccccCCC-cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003470 549 PNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
|+.++ ++||||+|||+ ++.++. .++.|..++|||||||||||++|||+|++|+|+++|||++
T Consensus 183 p~~~~-------~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~ 245 (275)
T cd05562 183 PTPEV-------RQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDA 245 (275)
T ss_pred cCCCC-------CcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 98875 89999999975 344443 3568999999999999999999999999999999999999
Q ss_pred HhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003470 628 LMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 628 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|++||+++...+ .+..||||+||+.+|++
T Consensus 246 L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 246 LRSTALDMGEPG-------------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHhCcccCCCC-------------------CCCCcCcCcccHHHHhh
Confidence 999999875322 34589999999999986
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.5e-47 Score=422.01 Aligned_cols=315 Identities=31% Similarity=0.412 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccc----cCCCCCCccCCCceeeeeehhHHHHh
Q 003470 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCE----VDPDTKRSFCNGKIIGAQHFAEAAIA 218 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~n~ki~~~~~~~~~~~~ 218 (817)
+|++. .++|+||+|||||||||++||+|.+...... .|.+.+. ........+++.+++++++|.+...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA----KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND- 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc----ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC-
Confidence 57663 2589999999999999999999998743221 1110010 0111223456778999999875411
Q ss_pred hccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeec--CCCCCHHHHHHHHHHH
Q 003470 219 ARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYR--LFGGFVADVVAAIDQA 296 (817)
Q Consensus 219 ~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~--~~~~~~~di~~ai~~a 296 (817)
+.....|..+|||||||||+|...... ....+.||||+|+|+.+|++.. ........+++|++++
T Consensus 74 --------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a 140 (346)
T cd07475 74 --------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDA 140 (346)
T ss_pred --------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 111144788999999999999864311 1125799999999999999974 4456778899999999
Q ss_pred HHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc----------------cCCCCcE
Q 003470 297 VHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL----------------VSYSPWI 360 (817)
Q Consensus 297 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~~~~v 360 (817)
++.|++|||||||...... .....+..+++++.++|++||+||||+|...... +...+++
T Consensus 141 ~~~g~~Vin~S~G~~~~~~----~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 141 VKLGADVINMSLGSTAGFV----DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHcCCCEEEECCCcCCCCC----CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999865432 3456788899999999999999999998654321 1223344
Q ss_pred EEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEe
Q 003470 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCG 440 (817)
Q Consensus 361 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~ 440 (817)
|+||++..
T Consensus 217 i~Vga~~~------------------------------------------------------------------------ 224 (346)
T cd07475 217 LTVASANK------------------------------------------------------------------------ 224 (346)
T ss_pred eEEeeccc------------------------------------------------------------------------
Confidence 44443210
Q ss_pred cccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEee
Q 003470 441 YSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSF 520 (817)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 520 (817)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccc
Q 003470 521 KGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600 (817)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSm 600 (817)
.......+.++.||+|||+.++ ++||||+|||.+|+++. .++.|..++||||
T Consensus 225 -----------~~~~~~~~~~~~~S~~G~~~~~-------~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS~ 276 (346)
T cd07475 225 -----------KVPNPNGGQMSGFSSWGPTPDL-------DLKPDITAPGGNIYSTV----------NDNTYGYMSGTSM 276 (346)
T ss_pred -----------ccCCCCCCccCCCcCCCCCccc-------CcCCeEEeCCCCeEEec----------CCCceEeeCcHHH
Confidence 0001123478899999999876 89999999999999987 3467899999999
Q ss_pred hhHHHHHHHHHHHHh----CCCCCHHH----HHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccc
Q 003470 601 AAPHIAGIAALVKQK----HPYWSPAA----IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRA 672 (817)
Q Consensus 601 AaP~VAG~aALl~q~----~p~ls~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 672 (817)
|||+|||++|||+|+ +|.|++.+ ||.+|++||.+...... ....+.+.++|+|+||+.+
T Consensus 277 AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~-------------~~~~~~~~~~G~G~vn~~~ 343 (346)
T cd07475 277 ASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED-------------TKTYYSPRRQGAGLIDVAK 343 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC-------------CCccCCccccCcchhcHHH
Confidence 999999999999998 78898876 78899999995321111 3455777899999999999
Q ss_pred ccC
Q 003470 673 ALD 675 (817)
Q Consensus 673 Al~ 675 (817)
|++
T Consensus 344 Av~ 346 (346)
T cd07475 344 AIA 346 (346)
T ss_pred hhC
Confidence 985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-47 Score=413.64 Aligned_cols=296 Identities=31% Similarity=0.425 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||+|||++||+|.++...+ .++.+.++|..+... .
T Consensus 4 ~~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 4 KLHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------------CKVAGGYDFVGDDYD--G 54 (312)
T ss_pred hHHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------------ceeccccccCCcccc--c
Confidence 45555 799999999999999999999999862211 122333333322111 0
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
.+...+...+.|..+|||||||||+|.... ..+.||||+|+|+.+|++...+....+.+++++++|+++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 112223346678899999999999997542 24789999999999999987666777889999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEe
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+|||||||....+. ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~~------~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 126 DVITASLGGPSGWS------EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred CEEEeCCCcCCCCC------CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 99999999865432 357778889999999999999999987532 2345667777777631
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003470 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003470 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhC-C
Q 003470 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKH-P 617 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p 617 (817)
+.||+|||+.+. ..||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~~-------~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNEL-------YLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCCC-------CcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999875 89999999999999988542 2369999999999999999999999999 9
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeee
Q 003470 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIF 680 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~ 680 (817)
.+++.+||++|++||.++...+..-. ....++..++|+|+||+.+|++..-.+
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~~~----------~~~~~~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGTSA----------LPDLAPVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCCcc----------ccCCCCHhhcCcceeeHHHHhcCCccc
Confidence 99999999999999998764332110 111366779999999999999965443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.6e-46 Score=393.53 Aligned_cols=250 Identities=27% Similarity=0.318 Sum_probs=202.6
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccC
Q 003470 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAF 222 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~ 222 (817)
.|.. +++|+||+|||||+|||++||+|.+.....+ ..+..
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~~~~----------------------------~~~~~-------- 41 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANLTPL----------------------------FTYAA-------- 41 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCccccc----------------------------cCccc--------
Confidence 4555 7899999999999999999999997521100 00000
Q ss_pred CCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCC-HHHHHHHHHHHHHcCC
Q 003470 223 NPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGF-VADVVAAIDQAVHDGV 301 (817)
Q Consensus 223 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~-~~di~~ai~~a~~~g~ 301 (817)
......|..+|||||||||+|+... .+.||||+|+|+.+|++.....+. ..++++||+||+++|+
T Consensus 42 ----~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 ----AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGA 107 (267)
T ss_pred ----cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCC
Confidence 0123346789999999999997531 368999999999999998764443 6789999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||..... ......+.++++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~----~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 171 (267)
T cd07476 108 HIINISGGRLTQT----GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------ 171 (267)
T ss_pred CEEEecCCcCCCC----CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------
Confidence 9999999974421 123557889999999999999999999998877788889999999985310
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003470 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003470 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
+.+
T Consensus 172 -----------------------------------------------------------------------------~~~ 174 (267)
T cd07476 172 -----------------------------------------------------------------------------GLP 174 (267)
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 145
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC---
Q 003470 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY--- 618 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--- 618 (817)
+.||+||+.. .||||+|||.+|+++. .++.|..++|||||||||||++|||+|++|.
T Consensus 175 ~~~s~~g~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~ 234 (267)
T cd07476 175 LKFSNWGADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGA 234 (267)
T ss_pred eeecCCCCCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCC
Confidence 6789999864 4889999999999987 3468999999999999999999999999887
Q ss_pred -CCHHHHHHHHhccccccccCC
Q 003470 619 -WSPAAIKSALMTTTTKLDRAS 639 (817)
Q Consensus 619 -ls~~~ik~~L~~TA~~~~~~g 639 (817)
++|++||++|++||+++...+
T Consensus 235 ~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 235 PPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred CCCHHHHHHHHHHhCccCCCcc
Confidence 899999999999999986543
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=9.7e-46 Score=395.43 Aligned_cols=269 Identities=23% Similarity=0.297 Sum_probs=190.4
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHh-----hccCC------
Q 003470 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIA-----ARAFN------ 223 (817)
Q Consensus 155 ~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~-----~~~~~------ 223 (817)
|+|+|||||||||++||+|++........++ .++..+.+.++. .-+++++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~-~~~~d~d~ng~~------dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP-GNGIDDDNNGYI------DDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC-CCCccCCCCCcc------ccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999987211111110 111111222221 12455555431100 00000
Q ss_pred CCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcE
Q 003470 224 PAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI 303 (817)
Q Consensus 224 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dV 303 (817)
...+...+.|..+|||||||||+|....+ .++.||||+|+|+.+|++.. +....+++++||+||++.|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcE
Confidence 01122345578999999999999975422 14789999999999999864 3566788999999999999999
Q ss_pred EEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc---c--------CCCCcEEEEeeeecCcce
Q 003470 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL---V--------SYSPWITTVAAAIDDRRY 372 (817)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---~--------~~~~~vitVgA~~~~~~~ 372 (817)
||||||..... ....+..+++++.++|+++|+||||+|...... + ...+++|+|||+...
T Consensus 145 iN~S~G~~~~~------~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 145 INMSFGKSFSP------NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEeCCCCCCCC------ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 99999964322 234678889999999999999999998653211 1 123455555543110
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003470 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003470 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003470 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
.....++.||++|+. +|||+|||.+|+++. .++.|..++|||||||||||++|||
T Consensus 216 ---~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl~ 270 (291)
T cd07483 216 ---YENNLVANFSNYGKK------------NVDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAALI 270 (291)
T ss_pred ---CCcccccccCCCCCC------------ceEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHHH
Confidence 001157889999974 349999999999987 3468999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccc
Q 003470 613 KQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 613 ~q~~p~ls~~~ik~~L~~TA~ 633 (817)
+|++|+|++.|||++|++||.
T Consensus 271 ~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 271 WSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999984
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-46 Score=384.00 Aligned_cols=227 Identities=27% Similarity=0.416 Sum_probs=186.5
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003470 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 157 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
|+|||||||||++||+|.++. +..+++. .....|..+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------------~~~~~~~--------------~~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------------IARLFFA--------------GPGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------------cccccCC--------------CCCCCCCCC
Confidence 789999999999999998751 1111110 013456789
Q ss_pred CCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC---CCCHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 003470 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF---GGFVADVVAAIDQAVHDGVDILSLSVGPNSP 313 (817)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~---~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~ 313 (817)
|||||||||+|+... ..||||+|+|+.+|++...+ .++.+++++||+||++.|++|||||||...
T Consensus 38 HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 999999999997531 16999999999999998643 356778999999999999999999999631
Q ss_pred CCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCC
Q 003470 314 PATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPA 392 (817)
Q Consensus 314 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (817)
...+..+++++.++|++||+||||+|... ..+|+..+++|+|++++.
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------ 153 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------ 153 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------
Confidence 34678899999999999999999999763 456777889999987521
Q ss_pred CCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeec
Q 003470 393 THGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVE 472 (817)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~ 472 (817)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCC
Q 003470 473 NVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIK 552 (817)
Q Consensus 473 ~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~ 552 (817)
.+.++.||++|+..
T Consensus 154 -----------------------------------------------------------------~~~~~~~s~~g~~~- 167 (239)
T cd05561 154 -----------------------------------------------------------------RGRLYREANRGAHV- 167 (239)
T ss_pred -----------------------------------------------------------------CCCccccCCCCCcc-
Confidence 11567889999876
Q ss_pred CCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q 003470 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTT 632 (817)
Q Consensus 553 ~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA 632 (817)
||+|||.+|+++. .++.|..++|||||||||||++|||+|++| ++++|||++|++||
T Consensus 168 ------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta 224 (239)
T cd05561 168 ------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATA 224 (239)
T ss_pred ------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHh
Confidence 9999999999976 456899999999999999999999999999 99999999999999
Q ss_pred cccccCC
Q 003470 633 TKLDRAS 639 (817)
Q Consensus 633 ~~~~~~g 639 (817)
+++...+
T Consensus 225 ~~~g~~~ 231 (239)
T cd05561 225 KDLGPPG 231 (239)
T ss_pred hccCCCC
Confidence 9876544
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-45 Score=395.19 Aligned_cols=289 Identities=39% Similarity=0.560 Sum_probs=217.5
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc---CCCCCCCCC
Q 003470 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA---FNPAVDFAS 230 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~---~~~~~~~~~ 230 (817)
|+||+|||||+|||++||+|.+.. +.+.++..+++|......... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG-----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC-----------------------CCCCceeeeeECccCCCCcccccccccccccCC
Confidence 899999999999999999999651 122344555555432111000 000001122
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|..+|||||||||+|+..+ ...+.||||+|+|+.+|++.....+...++++||+|+++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 456889999999999997542 125789999999999999986666788899999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc--cCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003470 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
.... ..+.+..+++++.++|+++|+||||+|...... ++..+++|+|||+.....
T Consensus 130 ~~~~------~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 130 SVNG------PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCC------CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 5432 345788899999999999999999998765443 567899999998630000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003470 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccc-cCC
Q 003470 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF-SAR 547 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f-SS~ 547 (817)
........| |+.
T Consensus 187 -------------------------------------------------------------------~~~~~~~~~~s~~ 199 (295)
T cd07474 187 -------------------------------------------------------------------AEADTVGPSSSRG 199 (295)
T ss_pred -------------------------------------------------------------------CCCCceeccCCCC
Confidence 000123334 444
Q ss_pred CCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003470 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 548 Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
|+... .++||||+|||.+|.+++... ++.|..++|||||||+|||++|||+|++|+|++++||++
T Consensus 200 ~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~ 264 (295)
T cd07474 200 PPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAA 264 (295)
T ss_pred CCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 55554 389999999999999987532 357899999999999999999999999999999999999
Q ss_pred HhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccc
Q 003470 628 LMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAA 673 (817)
Q Consensus 628 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 673 (817)
|++||++....+. ..+++..+|+|+||+.+|
T Consensus 265 L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 265 LMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 9999998765432 122456899999999887
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.8e-45 Score=383.13 Aligned_cols=248 Identities=28% Similarity=0.355 Sum_probs=197.7
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC-CCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS-PLDG 234 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~-~~D~ 234 (817)
||+|||||||||++||+|.... + ..+.++.+.++|.+.. .. ..|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~---------~-------------~~~~~i~~~~~~~~~~------------~~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH---------L-------------FKNLRILGEYDFVDNS------------NNTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc---------c-------------ccCCceeeeecCccCC------------CCCCCCC
Confidence 7999999999999999995321 0 1123577777775431 12 2578
Q ss_pred CCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC--CCHHHHHHHHHHHHHcCCcEEEecCCCCC
Q 003470 235 DGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSVGPNS 312 (817)
Q Consensus 235 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~--~~~~di~~ai~~a~~~g~dVIn~SlG~~~ 312 (817)
++|||||||||+|+.. +.+.||||+|+|+.+|+...... ....+++.|++|+.+.|++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999999753 24689999999999998764322 24556899999999999999999999764
Q ss_pred CCCCC-------ccCCCChHHHHHHHHHHcCceEEEecCCCCCC---CCCccCCCCcEEEEeeeecCcceeeEEEeCCCc
Q 003470 313 PPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF---PKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGK 382 (817)
Q Consensus 313 ~~~~~-------~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 382 (817)
..... .......+.++++.+.++|+++|+||||+|.. ....|+..+++|+|||...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 182 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------------- 182 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------------
Confidence 32110 01123467888999999999999999999987 3456778899999998521
Q ss_pred EEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhc
Q 003470 383 ILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSL 462 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~ 462 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccc
Q 003470 463 GAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVA 542 (817)
Q Consensus 463 Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 542 (817)
.+.++
T Consensus 183 ---------------------------------------------------------------------------~~~~~ 187 (261)
T cd07493 183 ---------------------------------------------------------------------------NGNKA 187 (261)
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11577
Q ss_pred cccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHH
Q 003470 543 LFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622 (817)
Q Consensus 543 ~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~ 622 (817)
.||++||+.++ ++||||+|||.+|++.. .++.|..++|||||||+|||++|||+|++|+|++.
T Consensus 188 ~~S~~G~~~~~-------~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~ 250 (261)
T cd07493 188 SFSSIGPTADG-------RLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWTNL 250 (261)
T ss_pred ccCCcCCCCCC-------CcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 89999999876 89999999999999854 34679999999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q 003470 623 AIKSALMTTTT 633 (817)
Q Consensus 623 ~ik~~L~~TA~ 633 (817)
|||++|++||+
T Consensus 251 ~i~~~l~~tA~ 261 (261)
T cd07493 251 QIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1e-44 Score=383.45 Aligned_cols=247 Identities=34% Similarity=0.422 Sum_probs=195.3
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003470 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|||||+|||++||+|.+. |++.... .+...+++. +.......+.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~----------~~~~~~~-----------~~~~~~~~~---------d~~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK----------YRGWGGG-----------SADHDYNWF---------DPVGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc----------ccccCCC-----------Ccccccccc---------cCCCCCCCCCC
Confidence 89999999999999999999975 1110000 000000110 11112345668
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH------------cCC
Q 003470 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH------------DGV 301 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~------------~g~ 301 (817)
..+|||||||||+|..... ...||||+|+|+.+|++.... ++..+++++++++++ .|+
T Consensus 51 ~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLAP 120 (264)
T ss_pred CCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccCC
Confidence 8999999999999975321 248999999999999998764 778899999999975 789
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC---ccCCCCcEEEEeeeecCcceeeEEEe
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT---LVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+|||||||.... ....+..+++.+.++|++||+||||+|..... .++..+++|+|||++.
T Consensus 121 ~Iin~S~G~~~~-------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~---------- 183 (264)
T cd07481 121 DVINNSWGGPSG-------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR---------- 183 (264)
T ss_pred eEEEeCCCcCCC-------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC----------
Confidence 999999997532 23567778888999999999999999875432 4667889999987421
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003470 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003470 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 184 -------------------------------------------------------------------------------~ 184 (264)
T cd07481 184 -------------------------------------------------------------------------------N 184 (264)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003470 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.++.||++||...+ ++||||+|||.+|.++.+ ++.|..++|||||||+|||++|||+|++|+
T Consensus 185 ~~~~~~S~~g~~~~~-------~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 247 (264)
T cd07481 185 DVLADFSSRGPSTYG-------RIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSANPS 247 (264)
T ss_pred CCCccccCCCCCCCC-------CcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 267889999999875 899999999999999883 467899999999999999999999999999
Q ss_pred --CCHHHHHHHHhcccc
Q 003470 619 --WSPAAIKSALMTTTT 633 (817)
Q Consensus 619 --ls~~~ik~~L~~TA~ 633 (817)
++++|||.+|++||+
T Consensus 248 ~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 248 LIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-45 Score=379.17 Aligned_cols=336 Identities=26% Similarity=0.370 Sum_probs=259.0
Q ss_pred hCCCeEEEEEeCCcccccccCCCCCccccccccccccccChHHHHHHHHHHHHHHHHHHHHhhccC--------------
Q 003470 19 LGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLEKKHDMLLGLLFERD-------------- 84 (817)
Q Consensus 19 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 84 (817)
...+.+|||.|+.. ...+.++.+.++++..|+.-.......+
T Consensus 77 ~~~~~~YiV~f~~~------------------------~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~ 132 (501)
T KOG1153|consen 77 EALPSRYIVVFKPD------------------------ASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTF 132 (501)
T ss_pred cccccceEEEeCCC------------------------ccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhh
Confidence 46789999999944 2345666777777766654433211111
Q ss_pred -CceEEEEecc-ccceEEEEcCHHHHHHHHcCCCceEEEccceecccc-----CCCCcccCCCC---------CCCCCCC
Q 003470 85 -TYKKLYSYKH-LINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLT-----THTPEFLGLPT---------GVWPTGG 148 (817)
Q Consensus 85 -~~~~~~~y~~-~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~---------~~w~~~~ 148 (817)
..+..+.... +|+|+.-..+.+.+..++..|-++.++++..++... .+....|++.+ ..|...-
T Consensus 133 ~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~ 212 (501)
T KOG1153|consen 133 GGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYV 212 (501)
T ss_pred cccccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEE
Confidence 1344555554 899999999999999999999999999887775533 12222344432 1233221
Q ss_pred CCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCC
Q 003470 149 GFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDF 228 (817)
Q Consensus 149 ~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 228 (817)
..-..|+||...|+||||+.+||||.++.. | |..++ +.
T Consensus 213 Y~~~aG~gvtaYv~DTGVni~H~dFegRa~--------w------Ga~i~----------------------------~~ 250 (501)
T KOG1153|consen 213 YEIDAGKGVTAYVLDTGVNIEHPDFEGRAI--------W------GATIP----------------------------PK 250 (501)
T ss_pred eecccCCCeEEEEeccccccccccccccee--------c------ccccC----------------------------CC
Confidence 223489999999999999999999999842 2 11110 01
Q ss_pred CCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc---------
Q 003470 229 ASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD--------- 299 (817)
Q Consensus 229 ~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~--------- 299 (817)
....|++||||||||+|++.. .|||.+++|+++||+.+++.+..+++++++|++++.
T Consensus 251 ~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~ 316 (501)
T KOG1153|consen 251 DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEG 316 (501)
T ss_pred CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccC
Confidence 233589999999999999974 699999999999999999999999999999999986
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEe
Q 003470 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+..|.|||+|+. .+-.++.|+++|.+.|+++++||||+..+.+ +.|++++.+|||||++.
T Consensus 317 k~sv~NlSlGg~---------~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------- 377 (501)
T KOG1153|consen 317 KKSVANLSLGGF---------RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------- 377 (501)
T ss_pred CCeEEEEecCCc---------ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------
Confidence 578999999985 3457999999999999999999999988765 45678999999999631
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003470 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003470 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 378 -------------------------------------------------------------------------------~ 378 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------N 378 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003470 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.+|.||+||++. ||.|||++|+|+|... ...-.++||||||+|||||++|.+++.+|.
T Consensus 379 D~iA~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~ 437 (501)
T KOG1153|consen 379 DTIAFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPL 437 (501)
T ss_pred cchhhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCC
Confidence 2799999999999 9999999999999753 235578999999999999999999999883
Q ss_pred ---------CCHHHHHHHHhcccc
Q 003470 619 ---------WSPAAIKSALMTTTT 633 (817)
Q Consensus 619 ---------ls~~~ik~~L~~TA~ 633 (817)
.+|.++|..+..-..
T Consensus 438 ~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 438 PDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ChHHhhhccCChHHhhhhhhcccc
Confidence 378888887766544
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=7.1e-44 Score=387.57 Aligned_cols=221 Identities=27% Similarity=0.328 Sum_probs=167.6
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHHHHHHHcCCcEEEecCC
Q 003470 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAIDQAVHDGVDILSLSVG 309 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai~~a~~~g~dVIn~SlG 309 (817)
.|+++|||||||||||+.... ..+.||||+|+|+++|++....+. ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 578899999999999975321 247899999999999998754332 2356999999999999999999999
Q ss_pred CCCCCCCCccCCCChHHHHHHH-HHHcCceEEEecCCCCCCCCCc--cC-CCCcEEEEeeeecCcceeeEEEeCCCcEEE
Q 003470 310 PNSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKTL--VS-YSPWITTVAAAIDDRRYKNHLNLGNGKILA 385 (817)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~ 385 (817)
.....++. ..+..++.+ +.++|+++|+||||+|+...++ |+ ..+++|+|||+.....+....
T Consensus 254 ~~~~~~~~-----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y--------- 319 (412)
T cd04857 254 EATHWPNS-----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY--------- 319 (412)
T ss_pred cCCCCccc-----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc---------
Confidence 86543221 124444444 4568999999999999876554 32 478999999964221100000
Q ss_pred eeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCce
Q 003470 386 GIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAA 465 (817)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 465 (817)
.
T Consensus 320 ------------------------------------------~------------------------------------- 320 (412)
T cd04857 320 ------------------------------------------S------------------------------------- 320 (412)
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred EEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccccc
Q 003470 466 GFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFS 545 (817)
Q Consensus 466 ~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fS 545 (817)
......+.++.||
T Consensus 321 -------------------------------------------------------------------~~~~~~~~~~~fS 333 (412)
T cd04857 321 -------------------------------------------------------------------LREKLPGNQYTWS 333 (412)
T ss_pred -------------------------------------------------------------------cccccCCcccccc
Confidence 0000123689999
Q ss_pred CCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH----hCCCCCH
Q 003470 546 ARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ----KHPYWSP 621 (817)
Q Consensus 546 S~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~ 621 (817)
||||+.++ ++||||+|||+.|.|+- .. ....|..|+|||||||||||++|||++ .+|+|+|
T Consensus 334 SrGP~~dG-------~~~pdI~APG~~I~s~p-~~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp 398 (412)
T cd04857 334 SRGPTADG-------ALGVSISAPGGAIASVP-NW-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTP 398 (412)
T ss_pred ccCCcccC-------CcCceEEeCCCcEEEcc-cC-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 99999997 99999999999998852 11 235789999999999999999999985 4789999
Q ss_pred HHHHHHHhcccccc
Q 003470 622 AAIKSALMTTTTKL 635 (817)
Q Consensus 622 ~~ik~~L~~TA~~~ 635 (817)
.+||++|++||+++
T Consensus 399 ~~Vk~aL~~TA~~~ 412 (412)
T cd04857 399 YSVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999864
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-43 Score=374.73 Aligned_cols=258 Identities=35% Similarity=0.542 Sum_probs=206.0
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003470 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|+|||+|||++||+|.+..... +.+.. .........|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-----------------------------~~~~~---------~~~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-----------------------------ADFVN---------TVNGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-----------------------------ccccc---------cccCCCCCCC
Confidence 899999999999999999999762110 00000 0011234557
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc----CCcEEEecCC
Q 003470 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD----GVDILSLSVG 309 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~----g~dVIn~SlG 309 (817)
..+|||||||||+|+.... .+.+.||||+|+|+.+|+++..+.+..+++++||+|+++. +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999985421 1247999999999999999987677888999999999998 9999999999
Q ss_pred CCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEee
Q 003470 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGI 387 (817)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
..... ....+.+..+++++.++|++||+||||+|.... ..++..+++|+|||+..+..
T Consensus 116 ~~~~~----~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------- 175 (264)
T cd07487 116 APPDP----SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------- 175 (264)
T ss_pred CCCCC----CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------
Confidence 86543 224678899999999999999999999998765 45677899999998632110
Q ss_pred ecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEE
Q 003470 388 GLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGF 467 (817)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~ 467 (817)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCC
Q 003470 468 VLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSAR 547 (817)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~ 547 (817)
....++.||++
T Consensus 176 ---------------------------------------------------------------------~~~~~~~~s~~ 186 (264)
T cd07487 176 ---------------------------------------------------------------------HDDGISYFSSR 186 (264)
T ss_pred ---------------------------------------------------------------------CCccccccccC
Confidence 00157889999
Q ss_pred CCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003470 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 548 Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
||+.++ ++||||+|||.+|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+||++
T Consensus 187 G~~~~~-------~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~ 258 (264)
T cd07487 187 GPTGDG-------RIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCI 258 (264)
T ss_pred CCCCCC-------CcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHH
Confidence 999986 89999999999999976532111 1124568999999999999999999999999999999999999
Q ss_pred Hhcccc
Q 003470 628 LMTTTT 633 (817)
Q Consensus 628 L~~TA~ 633 (817)
|++||+
T Consensus 259 L~~tA~ 264 (264)
T cd07487 259 LRDTAT 264 (264)
T ss_pred HHhhcC
Confidence 999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.3e-43 Score=373.77 Aligned_cols=262 Identities=29% Similarity=0.364 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCC-CCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSH-HTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
+|.. +++|+||+|||||||||++||+|.+. ...++.+. ...+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------------~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------------VNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------------cCCccccc-------
Confidence 5766 78999999999999999999999987 22222110 00000000
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
+.........|..||||||||||+|+........|.. .+.|+||+|+|+.+|++........+++++||++|++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0000122345778999999999999754321111111 3457999999999999988666778889999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHc-------CceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceee
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-------GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN 374 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~ 374 (817)
+|||||||.... ..+...+..++..+.++ |++||+||||+|......++..+++|+|++++.
T Consensus 126 ~Vin~S~g~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 126 VILQNSWGGTGG-----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred cEEEecCCCCCc-----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999997542 12345677888888888 999999999999887777888899999998521
Q ss_pred EEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHH
Q 003470 375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~ 454 (817)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccc
Q 003470 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL 534 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (817)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCcCCccccCCccccCCC-cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003470 535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 535 ~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
.+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 195 ---~~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 195 ---NDNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ---CCCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 11567899999876 8999999 89888753211 124579999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHhcc
Q 003470 614 QKHPY-WSPAAIKSALMTT 631 (817)
Q Consensus 614 q~~p~-ls~~~ik~~L~~T 631 (817)
|++|+ ++++|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-43 Score=379.18 Aligned_cols=262 Identities=24% Similarity=0.249 Sum_probs=189.4
Q ss_pred EEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCCC
Q 003470 158 VIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGH 237 (817)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 237 (817)
+|||||||||.+||+|.+... ....+.. ....+.|..||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~-----------------------------~~~~~~~------------~~~~~~d~~gH 40 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA-----------------------------EDDLDSD------------EPGWTADDLGH 40 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc-----------------------------ccccccc------------CCCCcCCCCCC
Confidence 799999999999999997611 0111100 00114688999
Q ss_pred CccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC----CCCHHHHHHHHHHHHHcC---CcEEEecCCC
Q 003470 238 GSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF----GGFVADVVAAIDQAVHDG---VDILSLSVGP 310 (817)
Q Consensus 238 GThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~----~~~~~di~~ai~~a~~~g---~dVIn~SlG~ 310 (817)
||||||||++.... .....|+||+|+|+.+|++...+ ..+.+++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 99999999975431 12357999999999999998864 245678999999999853 4899999998
Q ss_pred CCCCCCCccCCCChHHHHHHH-HHHcCceEEEecCCCCCCCCC------------ccCCCCcEEEEeeeecCcceeeEEE
Q 003470 311 NSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKT------------LVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
.....+. ....+..++++ +.++|++||+||||+|..... .|+.++++|+|||++.+.......
T Consensus 113 ~~~~~~~---~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s- 188 (291)
T cd04847 113 PLPIDDG---RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA- 188 (291)
T ss_pred CCCccCC---CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-
Confidence 7544322 12345666654 568999999999999987543 245678999999976432100000
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003470 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
.
T Consensus 189 ------------------------------------------------~------------------------------- 189 (291)
T cd04847 189 ------------------------------------------------R------------------------------- 189 (291)
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003470 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
.+ ...
T Consensus 190 --------------------------------------------------------~~-------------------~~~ 194 (291)
T cd04847 190 --------------------------------------------------------YS-------------------AVG 194 (291)
T ss_pred --------------------------------------------------------cc-------------------ccc
Confidence 00 000
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCC--------CCCccCCceEeecCccchhHHHHHHH
Q 003470 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTD--------EANFVGEGFALISGTSMAAPHIAGIA 609 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSmAaP~VAG~a 609 (817)
....+.||||||..++ .+||||+|||++|.+........ .....++.|..++|||||||||||++
T Consensus 195 ~~~~~~fs~~Gp~~~~-------~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~a 267 (291)
T cd04847 195 PAPAGATTSSGPGSPG-------PIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLA 267 (291)
T ss_pred cccCCCccccCCCCCC-------CcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHH
Confidence 0123449999999986 99999999999998865321100 01113568999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhcccc
Q 003470 610 ALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 610 ALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
|||+|++|+++|++||++|++||+
T Consensus 268 All~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 268 AGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999985
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.4e-42 Score=365.56 Aligned_cols=229 Identities=34% Similarity=0.480 Sum_probs=192.9
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||+||+++||+|.++ +...++|... .+
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------------~~~~~~~~~~-------------~~ 58 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------------AIWGADFVGG-------------DP 58 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCC-----------------------------eeeeeecCCC-------------CC
Confidence 68999999999999999999999875 1222222211 12
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-----CCcEEE
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-----GVDILS 305 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-----g~dVIn 305 (817)
..|..+|||||||||+++. .||||+|+|+.+|+++..+.+..++++++++++++. +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 4578899999999999862 699999999999999987667888999999999987 489999
Q ss_pred ecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCCCcEE
Q 003470 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKIL 384 (817)
Q Consensus 306 ~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 384 (817)
||||... ...+..+++++.++|+++|+||||+|... ...++..+++|+|||++.+
T Consensus 125 ~S~g~~~---------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 125 MSLGGGA---------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred eCCCCCC---------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 9999742 35678889999999999999999999765 4556788999999985311
Q ss_pred EeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCc
Q 003470 385 AGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGA 464 (817)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga 464 (817)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccc
Q 003470 465 AGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544 (817)
Q Consensus 465 ~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 544 (817)
+.++.|
T Consensus 181 --------------------------------------------------------------------------~~~~~~ 186 (255)
T cd04077 181 --------------------------------------------------------------------------DARASF 186 (255)
T ss_pred --------------------------------------------------------------------------CCccCc
Confidence 147789
Q ss_pred cCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHH
Q 003470 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624 (817)
Q Consensus 545 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~i 624 (817)
|++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++||
T Consensus 187 S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v 245 (255)
T cd04077 187 SNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245 (255)
T ss_pred ccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 9999976 899999999998743 2468999999999999999999999999999999999
Q ss_pred HHHHhccccc
Q 003470 625 KSALMTTTTK 634 (817)
Q Consensus 625 k~~L~~TA~~ 634 (817)
|++|++||++
T Consensus 246 ~~~L~~tA~~ 255 (255)
T cd04077 246 KARLLNLATK 255 (255)
T ss_pred HHHHHhhccC
Confidence 9999999974
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=372.48 Aligned_cols=265 Identities=26% Similarity=0.321 Sum_probs=193.2
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCC----CCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVP----KYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
||+|||||||||++||+|.++...++..+. ..++..... +...-.++...... .+........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~----------~~~d~~~~~~~~~~---~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDS----------DPTDPGDWVTGDDV---PPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCC----------CCCCcccccccccc---cccccccCCC
Confidence 799999999999999999987544432221 000000000 00000000000000 0001112344
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH----------HcCC
Q 003470 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV----------HDGV 301 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~----------~~g~ 301 (817)
.+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ++.+++++|++|++ .+++
T Consensus 68 ~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~-~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 68 SPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG-GTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC-CcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 567899999999999975421 2468999999999999998764 47889999999998 4578
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCC
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
+|||||||..... ...+..++..+.++|++||+||||+|... ...++..+++|+|||++.
T Consensus 139 ~Iin~S~G~~~~~-------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------ 199 (285)
T cd07496 139 KVINLSLGGDGAC-------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------ 199 (285)
T ss_pred eEEEeCCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC------------
Confidence 9999999975321 35788899999999999999999999876 566778899999998521
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003470 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003470 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
.+.
T Consensus 200 -----------------------------------------------------------------------------~~~ 202 (285)
T cd07496 200 -----------------------------------------------------------------------------RGQ 202 (285)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 125
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCC-----CCCCccCCceEeecCccchhHHHHHHHHHHHHh
Q 003470 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGT-----DEANFVGEGFALISGTSMAAPHIAGIAALVKQK 615 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 615 (817)
++.||++|+.. ||+|||++|.++...... .........|..++|||||||+|||++|||+|+
T Consensus 203 ~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~ 269 (285)
T cd07496 203 RASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSV 269 (285)
T ss_pred cccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 78899999976 999999999988754321 011223457899999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcc
Q 003470 616 HPYWSPAAIKSALMTT 631 (817)
Q Consensus 616 ~p~ls~~~ik~~L~~T 631 (817)
+|+|++++||++|++|
T Consensus 270 ~p~lt~~~v~~~L~~t 285 (285)
T cd07496 270 NPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9999999999999976
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-42 Score=362.67 Aligned_cols=253 Identities=28% Similarity=0.387 Sum_probs=189.4
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||+|||++||+|.+... ...+|..+ .........|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----------------------------~~~~~~~~--------~~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----------------------------QWADFDEN--------RRISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----------------------------CceeccCC--------CCCCCCCCCCCC
Confidence 79999999999999999987521 11111100 001123445788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003470 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
+|||||||||+|+... +...||||+|+|+.+|++.... +..+++++||+|+++++++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC-
Confidence 9999999999997541 2367999999999999998754 7788999999999999999999999975431
Q ss_pred CCccCCCChHHHHHHHHHH-cCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCC
Q 003470 316 TTKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATH 394 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
.+.+..+++.+.+ +|++||+||||+|......++..+++|+|||++.+......
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~------------------- 167 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF------------------- 167 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-------------------
Confidence 4566677766665 69999999999998877778889999999997532210000
Q ss_pred CCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCC
Q 003470 395 GNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV 474 (817)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~ 474 (817)
..+
T Consensus 168 ------------------------s~~----------------------------------------------------- 170 (254)
T cd07490 168 ------------------------SSF----------------------------------------------------- 170 (254)
T ss_pred ------------------------cCC-----------------------------------------------------
Confidence 000
Q ss_pred CCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCC
Q 003470 475 SPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDF 554 (817)
Q Consensus 475 ~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 554 (817)
.......++.+|...+
T Consensus 171 ---------------------------------------------------------------g~~~~~~~~~~~~~~~- 186 (254)
T cd07490 171 ---------------------------------------------------------------GSSGASLVSAPDSPPD- 186 (254)
T ss_pred ---------------------------------------------------------------cccccccccCCCCCcc-
Confidence 0012222333444322
Q ss_pred CcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003470 555 SFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 555 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
...||||+|||.+|+++.... ..++.|..++|||||||+|||++|||+|++|+|++.|||.+|++||+
T Consensus 187 -----~~~~~d~~apG~~i~~~~~~~------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 -----EYTKPDVAAPGVDVYSARQGA------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -----CCcCceEEeccCCeEccccCC------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 368999999999999965221 14568999999999999999999999999999999999999999984
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.5e-42 Score=363.80 Aligned_cols=240 Identities=32% Similarity=0.474 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. + +|+||+|||||+|||++||+|... ++...++|.+
T Consensus 20 ~~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~----------------------------~~~~~~~~~~------- 59 (260)
T cd07484 20 KAWDI----T-GGSGVTVAVVDTGVDPTHPDLLKV----------------------------KFVLGYDFVD------- 59 (260)
T ss_pred HHHhh----c-CCCCCEEEEEeCCCCCCCcccccC----------------------------CcccceeccC-------
Confidence 57776 2 999999999999999999998543 1222233322
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
....+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++....+...++++||+++++.|+
T Consensus 60 -----~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 60 -----NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGA 126 (260)
T ss_pred -----CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 11235578899999999999864321 24689999999999999988767788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003470 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||... ....+..+++.+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 127 ~iin~S~g~~~--------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------ 186 (260)
T cd07484 127 KVINLSLGGGL--------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------ 186 (260)
T ss_pred eEEEecCCCCC--------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------
Confidence 99999999753 3457888899999999999999999999888888899999999985311
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003470 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003470 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
+.+
T Consensus 187 -----------------------------------------------------------------------------~~~ 189 (260)
T cd07484 187 -----------------------------------------------------------------------------DKR 189 (260)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 156
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003470 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++|+.. |++|||.+|+++.+ .+.|..++|||||||+|||++|||+|++| |++
T Consensus 190 ~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~ 245 (260)
T cd07484 190 ASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSA 245 (260)
T ss_pred CCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999875 89999999999873 35799999999999999999999999999 999
Q ss_pred HHHHHHHhcccccc
Q 003470 622 AAIKSALMTTTTKL 635 (817)
Q Consensus 622 ~~ik~~L~~TA~~~ 635 (817)
.+||++|++||+++
T Consensus 246 ~~i~~~L~~tA~~~ 259 (260)
T cd07484 246 SEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999875
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-42 Score=365.44 Aligned_cols=157 Identities=26% Similarity=0.335 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|+. +++|+||+|||||||||..|| |.... +.+. .. +..
T Consensus 12 ~~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~---------~~~~---------------~~----~~~------- 51 (298)
T cd07494 12 RVHQR----GITGRGVRVAMVDTGFYAHPF-FESRG---------YQVR---------------VV----LAP------- 51 (298)
T ss_pred HHHhc----CCCCCCcEEEEEeCCCcCCch-hhcCC---------ccce---------------ee----cCC-------
Confidence 56665 799999999999999999998 76541 1110 00 000
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
.......|++||||||||++ .||||+|+|+.+|++.+ ..+++++||+||+++|+
T Consensus 52 ----~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~ 105 (298)
T cd07494 52 ----GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSP 105 (298)
T ss_pred ----CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCC
Confidence 01123467889999999863 57999999999999865 35678999999999999
Q ss_pred cEEEecCCCCCCCCC--C---ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeee
Q 003470 302 DILSLSVGPNSPPAT--T---KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367 (817)
Q Consensus 302 dVIn~SlG~~~~~~~--~---~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~ 367 (817)
+|||||||....... + .......+..++++|.++|++||+||||++. .+|+..|++|+|||+.
T Consensus 106 dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 106 DIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred CEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 999999998543211 0 0112346888999999999999999999974 4688999999999974
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-42 Score=369.36 Aligned_cols=148 Identities=28% Similarity=0.430 Sum_probs=111.3
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||+|||.+||+|.+... ...+|.+ ...
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------------~~~~~~~-------------~~~ 41 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------------TTKSFVG-------------GED 41 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------------cCcccCC-------------CCC
Confidence 6999999999999999999999997621 1112211 112
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
+.|.+||||||||||+|+... +...||||+|+|+.+|++.....+...++++||+||++.|++|||||||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 457899999999999997542 23479999999999999987767778889999999999999999999998
Q ss_pred CCC------CCCCccCCCChHHHHHHHH---------------HHcCceEEEecCCCCCCC
Q 003470 311 NSP------PATTKTTFLNPFDVTLLAA---------------VKAGVFVAQAAGNGGPFP 350 (817)
Q Consensus 311 ~~~------~~~~~~~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~ 350 (817)
... +... ......++...+.+ .++|++||+||||+|...
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 113 DFPGLVDQGWPPG-LAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCcccccccCCCC-chhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 541 1111 11222344444444 679999999999998653
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.6e-41 Score=365.55 Aligned_cols=278 Identities=25% Similarity=0.303 Sum_probs=201.0
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCC
Q 003470 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (817)
Q Consensus 150 ~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (817)
.+++|+||+|||||||||++||+|.+.... ...+.++++.....+. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------------~~~~~~~~~~~~~~~~---------------~ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------------KTNLFHRKIVRYDSLS---------------D 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------------cCccCcccEEEeeccC---------------C
Confidence 479999999999999999999999875210 0011223344333321 1
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC-CCHHHHHHHHHHHHHcCCcEEEecC
Q 003470 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-GFVADVVAAIDQAVHDGVDILSLSV 308 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~-~~~~di~~ai~~a~~~g~dVIn~Sl 308 (817)
...|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 1227899999999999997643210 114689999999999999887542 4456689999999999999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHH-H-cCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003470 309 GPNSPPATTKTTFLNPFDVTLLAAV-K-AGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
|..... .......++.++. + +|++||+||||+|.... ..++..+++|+|||++......
T Consensus 124 G~~~~~------~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------- 187 (293)
T cd04842 124 GSPVNN------GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------- 187 (293)
T ss_pred CCCCcc------ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------
Confidence 986432 1234445555444 3 79999999999998765 5677899999999975332100
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003470 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003470 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.....+.++.
T Consensus 194 ----------------------------------------------------------------------~~~~~~~~~~ 203 (293)
T cd04842 194 ----------------------------------------------------------------------QSDNSDTVAS 203 (293)
T ss_pred ----------------------------------------------------------------------ccCCCCcccc
Confidence 0011237899
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC------
Q 003470 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP------ 617 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------ 617 (817)
||++||+.++ ++||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 204 ~S~~G~~~~~-------~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~ 275 (293)
T cd04842 204 FSSRGPTYDG-------RIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPT 275 (293)
T ss_pred ccCcCCCCCC-------CcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 9999999876 999999999999999864421 01111346899999999999999999999999854
Q ss_pred --CCCHHHHHHHHhcccc
Q 003470 618 --YWSPAAIKSALMTTTT 633 (817)
Q Consensus 618 --~ls~~~ik~~L~~TA~ 633 (817)
.+++.++|++|++||+
T Consensus 276 ~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 276 KFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCcCHHHHHHHHHhcCC
Confidence 6667799999999985
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-42 Score=357.43 Aligned_cols=241 Identities=29% Similarity=0.439 Sum_probs=192.2
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003470 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 157 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
|+|||||+|||++||+|.+.. ++...+++.. +..++.|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------------~~~~~~~~~~------------~~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------------KLVPGWNFVS------------NNDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------------CccCCccccC------------CCCCCCCCCC
Confidence 689999999999999999741 0111111111 1123457889
Q ss_pred CCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCC
Q 003470 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPAT 316 (817)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~ 316 (817)
|||||||||+|+..+. ..+.||||+|+|+.+|++.....+..+++.++++|+++.+++|||||||......
T Consensus 42 HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~- 112 (242)
T cd07498 42 HGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE- 112 (242)
T ss_pred CHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc-
Confidence 9999999999975321 2468999999999999998766667888999999999999999999999754422
Q ss_pred CccCCCChHHHHHHHHHH-cCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCC
Q 003470 317 TKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHG 395 (817)
Q Consensus 317 ~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
.+...+..++..+++ +|+++|+||||+|......++..+++|+|||++.
T Consensus 113 ---~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------- 162 (242)
T cd07498 113 ---SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------- 162 (242)
T ss_pred ---hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------
Confidence 245678888888888 9999999999999887767888999999998531
Q ss_pred CceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC
Q 003470 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (817)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~ 475 (817)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCCC
Q 003470 476 PGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFS 555 (817)
Q Consensus 476 ~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 555 (817)
.+.++.||+|||..
T Consensus 163 --------------------------------------------------------------~~~~~~~s~~g~~~---- 176 (242)
T cd07498 163 --------------------------------------------------------------NDARASYSNYGNYV---- 176 (242)
T ss_pred --------------------------------------------------------------CCCccCcCCCCCCe----
Confidence 11567899999976
Q ss_pred cCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003470 556 FQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 556 ~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
|++|||.++.+....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 ---------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ---------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ---------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999887543211 111245688999999999999999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-41 Score=358.97 Aligned_cols=249 Identities=21% Similarity=0.220 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|+... .+|+||+|+|||+|||.+||||.++.... .+
T Consensus 6 ~aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~~-----------------------------~~---------- 43 (277)
T cd04843 6 YAWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGITL-----------------------------IS---------- 43 (277)
T ss_pred HHHHhcC---CCCCcEEEEEecCCCCCCChhhccccccc-----------------------------cC----------
Confidence 5677642 45899999999999999999999762100 00
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH---
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH--- 298 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~--- 298 (817)
...+.|+++|||||||||+|..+. . ++.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n~--------~-G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~ 102 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDNG--------I-GVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLS 102 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecCC--------C-ceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccC
Confidence 011457889999999999996421 1 368999999999999986 2345666666666
Q ss_pred -cCCcEEEecCCCCCCCCCC-ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc------------c-CCCCcEEEE
Q 003470 299 -DGVDILSLSVGPNSPPATT-KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL------------V-SYSPWITTV 363 (817)
Q Consensus 299 -~g~dVIn~SlG~~~~~~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~------------~-~~~~~vitV 363 (817)
.++.+||||||........ .......+..+++++.++|++||+||||++...... + ...+++|+|
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~V 182 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMV 182 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEE
Confidence 3566799999985321110 011334566788999999999999999998752111 0 012356666
Q ss_pred eeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEeccc
Q 003470 364 AAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSF 443 (817)
Q Consensus 364 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~ 443 (817)
||+..+
T Consensus 183 gA~~~~-------------------------------------------------------------------------- 188 (277)
T cd04843 183 GAGSST-------------------------------------------------------------------------- 188 (277)
T ss_pred EeccCC--------------------------------------------------------------------------
Confidence 553200
Q ss_pred ccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeee
Q 003470 444 NFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGT 523 (817)
Q Consensus 444 ~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 523 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhH
Q 003470 524 GTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAP 603 (817)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 603 (817)
....++.||++||.. ||+|||++|+++..........+..+.|..++|||||||
T Consensus 189 -------------~~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP 242 (277)
T cd04843 189 -------------TGHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASP 242 (277)
T ss_pred -------------CCCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhH
Confidence 001378999999976 999999999999864322112223345688999999999
Q ss_pred HHHHHHHHHHH----h-CCCCCHHHHHHHHhcccc
Q 003470 604 HIAGIAALVKQ----K-HPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 604 ~VAG~aALl~q----~-~p~ls~~~ik~~L~~TA~ 633 (817)
||||++|||++ + +|+|+++|||++|++|+.
T Consensus 243 ~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 243 IVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99999999975 3 499999999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-40 Score=351.92 Aligned_cols=250 Identities=30% Similarity=0.398 Sum_probs=191.0
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcc---cccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003470 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGK---CEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 155 ~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
+||+|||||||||++||+|.++ .|... +..+........ -....+++| ..+..++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN---------MWVNPGEIPGNGIDDDGNGY-VDDIYGWNF------------VNNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc---------cccCcccccccCcccCCCCc-ccCCCcccc------------cCCCCCC
Confidence 6899999999999999999987 23211 111100000000 000111111 1123456
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003470 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
.|..+|||||||||+|+.... ..+.||||+|+|+.+|++...+.++..+++++++++++.+++|||+|||..
T Consensus 60 ~d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~ 131 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGG 131 (259)
T ss_pred CCCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 788999999999999975422 246899999999999999887667888999999999999999999999975
Q ss_pred CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC---CCccC--CCCcEEEEeeeecCcceeeEEEeCCCcEEEe
Q 003470 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP---KTLVS--YSPWITTVAAAIDDRRYKNHLNLGNGKILAG 386 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 386 (817)
.. ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 132 ~~--------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------ 185 (259)
T cd07473 132 GP--------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------ 185 (259)
T ss_pred CC--------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------
Confidence 32 45788889999999999999999998762 23333 3467888877421
Q ss_pred eecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceE
Q 003470 387 IGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAG 466 (817)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~ 466 (817)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccC
Q 003470 467 FVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546 (817)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS 546 (817)
.+.++.||+
T Consensus 186 -----------------------------------------------------------------------~~~~~~~s~ 194 (259)
T cd07473 186 -----------------------------------------------------------------------NDALASFSN 194 (259)
T ss_pred -----------------------------------------------------------------------CCCcCcccC
Confidence 125667899
Q ss_pred CCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003470 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626 (817)
Q Consensus 547 ~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 626 (817)
+||. +||+.|||.++++.. .++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 195 ~g~~------------~~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~ 252 (259)
T cd07473 195 YGKK------------TVDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKD 252 (259)
T ss_pred CCCC------------CcEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9975 349999999999965 456899999999999999999999999999999999999
Q ss_pred HHhcccc
Q 003470 627 ALMTTTT 633 (817)
Q Consensus 627 ~L~~TA~ 633 (817)
+|++||+
T Consensus 253 ~L~~tA~ 259 (259)
T cd07473 253 AILSSAD 259 (259)
T ss_pred HHHHhCC
Confidence 9999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=8.3e-41 Score=346.69 Aligned_cols=227 Identities=33% Similarity=0.516 Sum_probs=187.8
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||+||+++||+|.+.. ...++|... ......|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-----------------------------~~~~~~~~~-----------~~~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-----------------------------VGGANFTGD-----------DNNDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-----------------------------cCcccccCC-----------CCCCCCCCC
Confidence 7999999999999999998751 111222111 002445788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003470 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
+|||||||||++..... .+.|+||+|+|+.+|++...+.+..++++++++++++.|++|||||||...
T Consensus 41 ~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~--- 108 (229)
T cd07477 41 GHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS--- 108 (229)
T ss_pred CCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---
Confidence 99999999999975321 468999999999999998876677789999999999999999999999742
Q ss_pred CCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc--cCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCC
Q 003470 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPAT 393 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
....+..+++.+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 109 -----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 109 -----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 234677888899999999999999999876654 7888999999985311
Q ss_pred CCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003470 394 HGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCC
Q 003470 474 VSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKD 553 (817)
Q Consensus 474 ~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 553 (817)
+.++.||++|+..
T Consensus 160 -----------------------------------------------------------------~~~~~~s~~g~~~-- 172 (229)
T cd07477 160 -----------------------------------------------------------------NNRASFSSTGPEV-- 172 (229)
T ss_pred -----------------------------------------------------------------CCcCCccCCCCCc--
Confidence 1566789999875
Q ss_pred CCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003470 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 554 ~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
|+.|||.+|+++. ..+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 173 -----------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 -----------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999987 34678999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-41 Score=350.27 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=119.5
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003470 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|++|+|||||||||++||+|.++.. .+++|..... +.........|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~-----------------------------~~~~~~~~~~-----~~~~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII-----------------------------GGKSFSPYEG-----DGNKVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc-----------------------------cCCCCCCCCC-----CcccCCCCCCC
Confidence 7899999999999999999997511 1111111100 00000112246
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC------CCCHHHHHHHHHHHHHcCCcEEEec
Q 003470 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF------GGFVADVVAAIDQAVHDGVDILSLS 307 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~------~~~~~di~~ai~~a~~~g~dVIn~S 307 (817)
+.||||||||||+| +||+|+|+.+|++...+ .+....+++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~g------------------vap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMICR------------------ICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHHH------------------HCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 88999999999864 79999999999998654 2456789999999999999999999
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-C--ccCCCCcEEEEeeee
Q 003470 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-T--LVSYSPWITTVAAAI 367 (817)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~--~~~~~~~vitVgA~~ 367 (817)
||....... ......+..++++|.++|++||+||||+|.... + .++..+++|+|||++
T Consensus 110 ~g~~~~~~~--~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 110 WTIKKPEDN--DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeccccccc--ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 997543110 123567899999999999999999999998754 3 345678999999853
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.1e-40 Score=357.05 Aligned_cols=156 Identities=25% Similarity=0.334 Sum_probs=110.2
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
.|+|||||||||++||+|.+......... .....+.. .......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~----------------------~~~~~~~~-----~~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL----------------------VPKGGYDG-----KEAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc----------------------ccCCCcCC-----ccccccCCCCcCCCCC
Confidence 38999999999999999997521111000 00000000 0000011123456789
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003470 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
||||||||||+|+.. ..||||+|+|+.+|+++........++++||++|++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999999742 35999999999999998765567889999999999999999999999754322
Q ss_pred CC---ccCCCChHHHHHHHHHHcCceEEEecCCCCCCC
Q 003470 316 TT---KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (817)
Q Consensus 316 ~~---~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~ 350 (817)
.. .....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 011234577788888899999999999998753
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=6.5e-41 Score=358.90 Aligned_cols=276 Identities=35% Similarity=0.531 Sum_probs=208.1
Q ss_pred EEEEecceecCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003470 158 VIGFVDSGIYPHHPSFG-SHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 158 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
+|||||||||++||+|. ++- ...++.+.+.|.+.. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB---------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC---------CCcCccccCCC
Confidence 69999999999999999 540 112344556665431 11234567889
Q ss_pred CCccchhhhccCC-CccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH-HcCCcEEEecCCCCCCC
Q 003470 237 HGSHTAAIAAGNN-GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSVGPNSPP 314 (817)
Q Consensus 237 HGThVAGiiag~~-~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~-~~g~dVIn~SlG~~~~~ 314 (817)
|||||||||+|.. ..+ ....||||+|+|+.+|++...+ ....++++++++++ +.+++|||||||.....
T Consensus 48 HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 48 HGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred ccchhhhhccccccccc--------cccccccccccccccccccccc-cccccccchhhhhhhccCCccccccccccccc
Confidence 9999999999985 211 2458999999999999987654 67788999999999 88999999999873311
Q ss_pred CCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCC
Q 003470 315 ATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSP 391 (817)
Q Consensus 315 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (817)
+. ....+.+..+++.+.++|+++|+||||+|.... ..++..+++|+||++...
T Consensus 119 ~~--~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 119 PD--PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SH--SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc--cccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 112334667778899999999999999987654 345667888999875310
Q ss_pred CCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEee
Q 003470 392 ATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAV 471 (817)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~ 471 (817)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCC
Q 003470 472 ENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (817)
Q Consensus 472 ~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~ 551 (817)
+.++.||++|+..
T Consensus 175 -------------------------------------------------------------------~~~~~~s~~g~~~ 187 (282)
T PF00082_consen 175 -------------------------------------------------------------------GQPASYSNYGGPS 187 (282)
T ss_dssp -------------------------------------------------------------------SSBSTTSSBSTTE
T ss_pred -------------------------------------------------------------------ccccccccccccc
Confidence 1567899997654
Q ss_pred CCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003470 552 KDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 552 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
.. .++||||+|||.+|.++++.. ....|..++|||||||+|||++|||+|++|+|++.+||.+|++|
T Consensus 188 ~~------~~~~~di~a~G~~i~~~~~~~-------~~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~t 254 (282)
T PF00082_consen 188 DD------GRIKPDIAAPGGNILSAVPGS-------DRGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINT 254 (282)
T ss_dssp TT------CTTCEEEEEECSSEEEEETTT-------ESEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccccccc-------ccccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 21 389999999999999888532 11458889999999999999999999999999999999999999
Q ss_pred ccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003470 632 TTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 632 A~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|.++.... .......||||++|+.+|++
T Consensus 255 a~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 255 ADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred CcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 99986211 12334578999999999874
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-39 Score=335.30 Aligned_cols=150 Identities=25% Similarity=0.245 Sum_probs=116.6
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003470 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||||||++||+|.+..... +.+... +...+.....|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG-----------------------------EVTIDL-------EIIVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc-----------------------------cccccc-------ccccCCCCCCCCC
Confidence 7999999999999999999862110 000000 0001123455788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003470 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
||||||||||++. +|+++|+.+|+++..+.+..+++++||+|++++|++|||||||.....
T Consensus 45 gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 9999999999884 599999999999887667888999999999999999999999975321
Q ss_pred CCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeee
Q 003470 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~ 366 (817)
....+..+++++.++|+++|+||||++.... .|+..+++|+|++.
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2346788889999999999999999987543 36778899999874
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.8e-39 Score=350.22 Aligned_cols=250 Identities=23% Similarity=0.226 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|+|||||||++||+|.+.... ...++|...
T Consensus 30 ~~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------------~~~~~~~~~------ 72 (297)
T cd04059 30 PAWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------------EASYDFNDN------ 72 (297)
T ss_pred HHHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc---------------------------cccccccCC------
Confidence 46665 69999999999999999999999976210 011112111
Q ss_pred CCCCCCCCCC--CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc
Q 003470 222 FNPAVDFASP--LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD 299 (817)
Q Consensus 222 ~~~~~~~~~~--~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~ 299 (817)
.....+ .|..||||||||||+|+.... ....||||+|+|+.+|++... .....+..++.++.+
T Consensus 73 ----~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ----DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ----CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 001112 278899999999999975321 135899999999999998764 333345566665554
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHH-----cCceEEEecCCCCCCCCC----ccCCCCcEEEEeeeecCc
Q 003470 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGNGGPFPKT----LVSYSPWITTVAAAIDDR 370 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~~~vitVgA~~~~~ 370 (817)
.++|||||||........ ......+..++.++.+ +|++||+||||+|..... .....+++|+|||++.
T Consensus 138 ~~~Vin~S~g~~~~~~~~-~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~-- 214 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTV-DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA-- 214 (297)
T ss_pred CceEEECCCCCCCCCCcc-CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC--
Confidence 469999999976432210 1123345555665554 699999999999983222 1245678888887531
Q ss_pred ceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc
Q 003470 371 RYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA 450 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~ 450 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCC
Q 003470 451 SIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGL 530 (817)
Q Consensus 451 ~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCc-------EEEeeCCCCCCCCCccCCceEeecCccchhH
Q 003470 531 MPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSL-------IWAAWSPNGTDEANFVGEGFALISGTSMAAP 603 (817)
Q Consensus 531 ~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 603 (817)
.+.++.||++|+.. +++|||.. |+++.... ....|..++|||||||
T Consensus 215 -------~g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 215 -------NGVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred -------CCCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 12567889999876 78899877 66665321 1356789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003470 604 HIAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 604 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.8e-38 Score=337.16 Aligned_cols=248 Identities=32% Similarity=0.408 Sum_probs=188.3
Q ss_pred CCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCC
Q 003470 153 AGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPL 232 (817)
Q Consensus 153 tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (817)
+|+||+|||||+||+.+||+|.+...... . +.. ..........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------~--------------------~~~--------~~~~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------Y--------------------YVA--------VNDAGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------c--------------------ccc--------cccccCCCCC
Confidence 69999999999999999999998621110 0 000 0000012345
Q ss_pred CCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC-CCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003470 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF-GGFVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 233 D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~-~~~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
|..+|||||||||+|+... ..+.|+||+|+|+.+|+++... ......+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 7889999999999998542 2468999999999999998764 45667789999999999999999999986
Q ss_pred CCCCCC-------ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc---------cCCCCcEEEEeeeecCcceeeE
Q 003470 312 SPPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL---------VSYSPWITTVAAAIDDRRYKNH 375 (817)
Q Consensus 312 ~~~~~~-------~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---------~~~~~~vitVgA~~~~~~~~~~ 375 (817)
...... .......+..++..+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----- 189 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----- 189 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----
Confidence 532210 012456777888899999999999999998754332 23456788888753211
Q ss_pred EEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHH
Q 003470 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKV 455 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~ 455 (817)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccccc
Q 003470 456 SETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILH 535 (817)
Q Consensus 456 ~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (817)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccc--ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003470 536 KSAPQVAL--FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 536 ~~~~~~a~--fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
.... ||++|+... .++++|||.+|.++.+. .+..|..++|||||||+|||++|||+
T Consensus 190 ----~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al~~ 247 (267)
T cd04848 190 ----TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAALLA 247 (267)
T ss_pred ----Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHHHH
Confidence 2222 488887543 34799999999998742 14578899999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhcccc
Q 003470 614 QKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 614 q~~p~ls~~~ik~~L~~TA~ 633 (817)
|++|+++++|||++|++||+
T Consensus 248 ~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 248 QKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=323.60 Aligned_cols=263 Identities=25% Similarity=0.382 Sum_probs=208.2
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
|+||++|+|||.|||+.-+||.|+.-- . ..++.+ ...
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnvK-----------E-------------------RTNWTN-------------E~t 233 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNVK-----------E-------------------RTNWTN-------------EDT 233 (1033)
T ss_pred cccCCceEEEEeecccccCCccccchh-----------h-------------------hcCCcC-------------ccc
Confidence 899999999999999999999999630 0 001111 012
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
-.|.-||||.|||+|||.. ...|.||+++|++.|||.+..-.+++.+++|+.||+..++||+|+|+|+
T Consensus 234 LdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGG 301 (1033)
T KOG4266|consen 234 LDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGG 301 (1033)
T ss_pred cccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCC
Confidence 3467899999999999975 3579999999999999998767899999999999999999999999998
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCC--CCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003470 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY--SPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~--~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
+ .+.+.++-.-+..+....|++|.|+||+|+-.++..+. -..||.||..
T Consensus 302 P-------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI---------------------- 352 (1033)
T KOG4266|consen 302 P-------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI---------------------- 352 (1033)
T ss_pred c-------ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc----------------------
Confidence 6 34566887778888889999999999999976655332 2233434321
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003470 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003470 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+-.+.++.|||||
T Consensus 353 -------------------------------------------------------------------dfdD~IA~FSSRG 365 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------DFDDHIASFSSRG 365 (1033)
T ss_pred -------------------------------------------------------------------cccchhhhhccCC
Confidence 1123899999999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH----hCCCCCHHHH
Q 003470 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ----KHPYWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~i 624 (817)
-+.. +-|-+-+|+||||++-|.+|..... ..+...+||||.|+|.|||+++||.+ +.--++|+-+
T Consensus 366 MtTW-ELP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASm 434 (1033)
T KOG4266|consen 366 MTTW-ELPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASM 434 (1033)
T ss_pred ccee-ecCCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccCHHHH
Confidence 7643 1234557999999999999987652 34668999999999999999999977 2334699999
Q ss_pred HHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003470 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 625 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|.+|+..|.+++... -+.||+|++|+.++++
T Consensus 435 KQaLiegA~kLpg~N--------------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 435 KQALIEGAAKLPGPN--------------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHhHHhhCCCCc--------------------hhhccCcchhHHHHHH
Confidence 999999999986432 2689999999999876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=312.16 Aligned_cols=364 Identities=23% Similarity=0.288 Sum_probs=226.9
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003470 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
...||||||||++||.... ....||||+|+|+.+++-+..-+. +...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999997543 246799999999999997643222 233589999999999999999999998
Q ss_pred CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccC---CCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003470 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVS---YSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
..+++. -..++.+-+.+-++|+++|.||||.|+...++++ ....+|.|||.....+....
T Consensus 381 a~~pn~----GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------- 443 (1304)
T KOG1114|consen 381 AHLPNS----GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------- 443 (1304)
T ss_pred CCCCCc----chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-------------
Confidence 777653 2334333333446899999999999998776653 44588999985322210000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003470 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 444 -------------------------------------------------------------------------------- 443 (1304)
T KOG1114|consen 444 -------------------------------------------------------------------------------- 443 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003470 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+. ......+....+||||
T Consensus 444 ---------------------------------y~-----------------------------~~e~vp~~~YtWsSRg 461 (1304)
T KOG1114|consen 444 ---------------------------------YS-----------------------------VREPVPSNPYTWSSRG 461 (1304)
T ss_pred ---------------------------------hh-----------------------------hhccCCCCccccccCC
Confidence 00 0001122577899999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHh----CCCCCHHHH
Q 003470 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQK----HPYWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~i 624 (817)
|+.|| -+--.|+|||+.|.|. |.. .-..-..|+|||||+|+++|.+|||++. +-.|||.-|
T Consensus 462 P~~DG-------~lGVsi~APggAiAsV-P~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysV 526 (1304)
T KOG1114|consen 462 PCLDG-------DLGVSISAPGGAIASV-PQY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSV 526 (1304)
T ss_pred CCcCC-------CcceEEecCCccccCC-chh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHH
Confidence 99998 6777899999998763 221 2234478999999999999999999764 678999999
Q ss_pred HHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeeeecCchhhhhcc-ccCCCCC-ceee
Q 003470 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFL-CTTPGID-IHEI 702 (817)
Q Consensus 625 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~-~~~~~~~-~~~i 702 (817)
|.+|++||.+++.- .++.||.|++++.+|.+--.-.+..+..-+.|+ ...+. + ...|
T Consensus 527 rrAlenTa~~l~~i--------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f~~v~VgN-~~srGI 585 (1304)
T KOG1114|consen 527 RRALENTATKLGDI--------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGFINVNVGN-SCSRGI 585 (1304)
T ss_pred HHHHHhcccccCcc--------------------chhccCcceeehhHHHHHHHHhhhcCCccceeEEEeecc-ccccce
Confidence 99999999998642 357999999999999862111111111111110 00000 0 0011
Q ss_pred ecccCcccCCCCCCCCcCCCCcEEEeeecceEEEEEEEEEcCCCceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEE
Q 003470 703 RNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTL 782 (817)
Q Consensus 703 ~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~~~~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~ 782 (817)
....+..|. .|.+.+ |.+. -.|.--..|..+...|.+.........+.-.|+.+-+ .++.+.+.|++
T Consensus 586 yLRep~~~~----~p~e~~---i~Ve-----PiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l-~~~~R~i~VrV 652 (1304)
T KOG1114|consen 586 YLREPTQVC----SPSEHT---IGVE-----PIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML-ANQGRGINVRV 652 (1304)
T ss_pred EecCCcccC----Cccccc---eecc-----ccccCccccccccccceeeEeeecCCcceeCchhhee-ccCCceeEEEE
Confidence 100010000 000000 0000 0000001111011233333222222223333666666 78899999999
Q ss_pred EEecCCCc----eEEEEEEEEeCCCcEEEEeEEEE
Q 003470 783 TVRSVTGT----YSFGEICMKGSRGHKVNIPVIAQ 813 (817)
Q Consensus 783 ~~~~~~~~----~~~G~i~~~~~~~~~l~iP~~~~ 813 (817)
++...... .+-||-+-..+.++.++||+.|.
T Consensus 653 Dpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 653 DPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred CCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 99765443 34577666667789999999764
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-33 Score=287.72 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=85.0
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHH--HHcCCcEEEecC
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQA--VHDGVDILSLSV 308 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a--~~~g~dVIn~Sl 308 (817)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 347899999999999997 35679999987555221 223466777777 567999999999
Q ss_pred CCCCCCCCC-ccCCCChHHHHHHHHHHc-CceEEEecCCCCCCC-----CCccCCCCcEEEEeeee
Q 003470 309 GPNSPPATT-KTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFP-----KTLVSYSPWITTVAAAI 367 (817)
Q Consensus 309 G~~~~~~~~-~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~-----~~~~~~~~~vitVgA~~ 367 (817)
|........ .....+.+..+++.+.++ |+++|+||||+|... ...++.++++|+|||++
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 986443210 001123567778877766 999999999999853 23355788999999864
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=7.1e-31 Score=273.50 Aligned_cols=123 Identities=35% Similarity=0.469 Sum_probs=101.6
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH-HcCCcEEEecC
Q 003470 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSV 308 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~-~~g~dVIn~Sl 308 (817)
...|..+||||||++|++..... ...|+||+++|+.+|+...........+++|+++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34568899999999999975432 127999999999999998765567788999999999 89999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCC---CccCCCCcEEEEeeee
Q 003470 309 GPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAI 367 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~ 367 (817)
|..... ....+..++.++.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~------~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP------PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC------CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 985432 234677888888888 9999999999998776 4677889999999864
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.5e-24 Score=245.28 Aligned_cols=243 Identities=31% Similarity=0.445 Sum_probs=183.3
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|+|||+||+..||+|.+.... .++|.... ....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------------~~~~~~~~----------~~~~ 178 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------------GGDFVDGD----------PEPP 178 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccccc-----------------------------ccccccCC----------CCCC
Confidence 58999999999999999999999986210 01221110 0002
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecC-CCCCHHHHHHHHHHHHHcC--CcEEEec
Q 003470 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL-FGGFVADVVAAIDQAVHDG--VDILSLS 307 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~-~~~~~~di~~ai~~a~~~g--~dVIn~S 307 (817)
..|.++|||||+|++++.... +.....|+||+++++.+|++... +.+..++++.+++++.+.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 468899999999999994210 01136899999999999999876 5677888899999999999 9999999
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHHHHcC-ceEEEecCCCCCCCCC----ccCCC--CcEEEEeeeecCcceeeEEEeCC
Q 003470 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAG-VFVAQAAGNGGPFPKT----LVSYS--PWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~~--~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
+|.. .. ......+..++..++..| +++|+|+||+|..... .+... +.+++|+|..
T Consensus 252 ~g~~-~~----~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------- 313 (508)
T COG1404 252 LGGS-LS----DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------- 313 (508)
T ss_pred CCCC-cc----ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------
Confidence 9975 11 124557788888888888 9999999999876521 12211 2444444421
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003470 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003470 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
..+.
T Consensus 314 ----------------------------------------------------------------------------~~~~ 317 (508)
T COG1404 314 ----------------------------------------------------------------------------LSDT 317 (508)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0126
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEE-----eeCCCCCCCCCccCC--ceEeecCccchhHHHHHHHHHHH
Q 003470 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWA-----AWSPNGTDEANFVGE--GFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~S-----a~~~~~~~~~~~~~~--~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
++.||++|+... .+++|||.+|.+ ++ .+. .|..++||||++|||+|++||++
T Consensus 318 ~~~~s~~g~~~~-----------~~~~apg~~i~~~~~~~~~----------~~~~~~~~~~~Gts~a~p~v~g~aal~~ 376 (508)
T COG1404 318 VASFSNDGSPTG-----------VDIAAPGVNILSLSAVNTL----------PGDGADYVTLSGTSMAAPHVSGVAALVL 376 (508)
T ss_pred cccccccCCCCC-----------cceeCCCccccccccceee----------eCCccceEeeccccccccHHHHHHHHHH
Confidence 788999998521 299999999998 43 333 49999999999999999999999
Q ss_pred HhCC-CCCHHHHHHHHhccccc
Q 003470 614 QKHP-YWSPAAIKSALMTTTTK 634 (817)
Q Consensus 614 q~~p-~ls~~~ik~~L~~TA~~ 634 (817)
+.+| .+++.+++..+..++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 377 SANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccCcccCCHHHHHHHHhhcccc
Confidence 9999 89999999998888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.3e-19 Score=182.81 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++||+|.+||+|.||||.|||++.+ | ..-..++|...
T Consensus 152 ~awa~----g~tgknvttaimddgvdymhpdlk~n----y-----------------------naeasydfssn------ 194 (629)
T KOG3526|consen 152 EAWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN----Y-----------------------NAEASYDFSSN------ 194 (629)
T ss_pred HHHhh----cccCCCceEEeecCCchhcCcchhcc----c-----------------------CceeecccccC------
Confidence 46666 89999999999999999999999975 1 11123344321
Q ss_pred CCCCCCCCCCCC--CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-
Q 003470 222 FNPAVDFASPLD--GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH- 298 (817)
Q Consensus 222 ~~~~~~~~~~~D--~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~- 298 (817)
++-+++.-.| .+.|||.|||-+++...+++ . -.|||.+.++..+|+++. .+..|++.|-...-+
T Consensus 195 --dpfpyprytddwfnshgtrcagev~aardngi--c------gvgvaydskvagirmldq---pymtdlieansmghep 261 (629)
T KOG3526|consen 195 --DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--C------GVGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEP 261 (629)
T ss_pred --CCCCCCcccchhhhccCccccceeeeeccCCc--e------eeeeeeccccceeeecCC---chhhhhhhhcccCCCC
Confidence 1112211112 57999999998776544332 1 269999999999999875 455566665332222
Q ss_pred cCCcEEEecCCCCCCCCCCccCCCChH---HHHHHHHHH-----cCceEEEecCCCCCC
Q 003470 299 DGVDILSLSVGPNSPPATTKTTFLNPF---DVTLLAAVK-----AGVFVAQAAGNGGPF 349 (817)
Q Consensus 299 ~g~dVIn~SlG~~~~~~~~~~~~~~~~---~~a~~~a~~-----~Gv~vV~AAGN~G~~ 349 (817)
...+|-+.|||-... + ...+.|- -+|+.+-++ .|-++|.|.|..|.+
T Consensus 262 ~kihiysaswgptdd---g-ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDD---G-KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ceEEEEecccCcCCC---C-cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 357899999996432 1 2222232 233333333 456888888887754
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=2.7e-17 Score=181.11 Aligned_cols=102 Identities=24% Similarity=0.263 Sum_probs=81.3
Q ss_pred ceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc---CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCce
Q 003470 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD---GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVF 338 (817)
Q Consensus 262 ~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~---g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~ 338 (817)
...||||+|+|+.|++.++. ..+++.++.+++.+ +++|||||||....... ..+.+.++.++.+|..+||.
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~--~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP--PAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC--HHHHHHHHHHHHHHHhCCeE
Confidence 46899999999999997653 34677888888887 99999999998643211 12345788889999999999
Q ss_pred EEEecCCCCCCCC-----------CccCCCCcEEEEeeeecC
Q 003470 339 VAQAAGNGGPFPK-----------TLVSYSPWITTVAAAIDD 369 (817)
Q Consensus 339 vV~AAGN~G~~~~-----------~~~~~~~~vitVgA~~~~ 369 (817)
||+|+||+|.... ..++.+|+|++||+++..
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~ 197 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLY 197 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeeccccc
Confidence 9999999997653 346789999999998644
No 44
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=99.27 E-value=5.9e-11 Score=107.96 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=63.2
Q ss_pred EEeeecceEEEEEEEEEcCCC-ceEEEEEEc--------CCC----------c-EEEEecCeEEEcCCCEEEEEEEEEEe
Q 003470 726 TVAHLVKTQVVTRTVTNVAEE-ETYSMSARM--------QPA----------I-AIEVNPPAMTLKPGASRKFTVTLTVR 785 (817)
Q Consensus 726 ~~~~~~~~~~~~~tv~n~~~~-~ty~~~~~~--------~~~----------~-~v~~~~~~~tv~~g~~~~~~v~~~~~ 785 (817)
.|.+.....+++.+|+|.+++ .+|++++.. ..+ + .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 455555557788899999999 999999861 011 1 57778899999999999999999998
Q ss_pred c----CCCceEEEEEEEEeCCCc-EEEEeEE
Q 003470 786 S----VTGTYSFGEICMKGSRGH-KVNIPVI 811 (817)
Q Consensus 786 ~----~~~~~~~G~i~~~~~~~~-~l~iP~~ 811 (817)
. ..+.+++|||+|+++++. .|+||||
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 7 457899999999998775 9999997
No 45
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.78 E-value=3.4e-08 Score=84.42 Aligned_cols=47 Identities=40% Similarity=0.593 Sum_probs=41.0
Q ss_pred cCCceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceeccc
Q 003470 83 RDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRL 129 (817)
Q Consensus 83 ~~~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~ 129 (817)
....++.+.|...||||+++++++++++|+++|+|++|+|++.++++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 34788999999999999999999999999999999999999988764
No 46
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.69 E-value=2e-07 Score=88.67 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=74.1
Q ss_pred cccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHH
Q 003470 425 EVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDY 504 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~ 504 (817)
.++...+++|||++|.| |.|.+.+|+.+++++||.++|+|++..............+|.+.|.. ++|+.|.++
T Consensus 39 ~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~-~dG~~L~~~ 111 (143)
T cd02133 39 EDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISK-EDGEALKAA 111 (143)
T ss_pred hccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecH-HHHHHHHHH
Confidence 34556678999999986 56889999999999999999999987542111111134689999866 999999999
Q ss_pred HhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCC
Q 003470 505 YNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (817)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~ 551 (817)
+++ ...+.|..+.. ....+.++.||||||+.
T Consensus 112 l~~-------~~~i~~~~~~~---------~~~~p~va~fSsrgp~g 142 (143)
T cd02133 112 LES-------SKKLTFNTKKE---------KATNPDLADFSSRGPWG 142 (143)
T ss_pred HhC-------CCeEEEEeccc---------cccCCccccccCcCCCC
Confidence 875 12233333211 23445799999999963
No 47
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.55 E-value=8.5e-07 Score=82.57 Aligned_cols=117 Identities=26% Similarity=0.399 Sum_probs=86.8
Q ss_pred EEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc-hHHH
Q 003470 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA-SIKK 454 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~-~~~~ 454 (817)
++++|++.+.|.++++... ..+++++..... .......|.. ..+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~-----~~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS-----GDVDASLCLP-GSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC-----CCCccccCCC-CCCChhhccccEEEEeCC------CCccHHH
Confidence 5789999999999987554 456666533211 2344578854 335557899999999874 45 7889
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhcc
Q 003470 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
+..++++.||.|+|++++........ .....+|.+.|.. ++++.|.+|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~~-~~~~~iP~v~I~~-~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDVV-ADAHVLPAVHVDY-EDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCceec-ccccccceEEECH-HHHHHHHHHHHcC
Confidence 99999999999999999876532222 2246799999976 9999999999865
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.4e-05 Score=93.91 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred eeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC-cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEE
Q 003470 263 ASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV-DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQ 341 (817)
Q Consensus 263 ~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~-dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~ 341 (817)
.+-+||+|+|..|-.- ......+..|+.+...+=. -+|-.||+...........+-+.++.....|..+|+.+++
T Consensus 288 s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999988551 2222223333333322211 2333566642111111122345667777888899999999
Q ss_pred ecCCCCCCCCC--------ccCCCCcEEEEee
Q 003470 342 AAGNGGPFPKT--------LVSYSPWITTVAA 365 (817)
Q Consensus 342 AAGN~G~~~~~--------~~~~~~~vitVgA 365 (817)
|+|.+|....+ .|+++|+|.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876543 3568999999997
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.02 E-value=1.5e-05 Score=70.89 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=58.3
Q ss_pred ccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC---CCCccCCCCCCCCeEEEcCchhHHH
Q 003470 424 PEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS---PGTKFDPVPVGIPGILITDVTKSMD 500 (817)
Q Consensus 424 ~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~---~~~~~~~~~~~~p~~~i~~~~~g~~ 500 (817)
...+...+++|||++|.| |.|++.+|+.+++++||.++|+++.... ...........||.++|.. ++|+.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~-~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISY-EDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-H-HHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCH-HHHhh
Confidence 456677889999999966 7899999999999999999999992221 2223345667899999976 99999
Q ss_pred HHHHH
Q 003470 501 LVDYY 505 (817)
Q Consensus 501 l~~~~ 505 (817)
|.+|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98874
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.99 E-value=3.5e-05 Score=69.93 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=63.7
Q ss_pred CCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC--C-CccCCCCCCCCeEEEcCc
Q 003470 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP--G-TKFDPVPVGIPGILITDV 495 (817)
Q Consensus 419 ~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~--~-~~~~~~~~~~p~~~i~~~ 495 (817)
.+|. ...+.+.+++|+|+++.| |.|.|.+|..+|+++||.++|+||+.... . .........||.++|..
T Consensus 31 ~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~- 102 (120)
T cd02129 31 VLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSY- 102 (120)
T ss_pred CCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeH-
Confidence 5676 344555678999999987 78999999999999999999999987631 1 11112456789999988
Q ss_pred hhHHHHHHHHhcc
Q 003470 496 TKSMDLVDYYNTS 508 (817)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (817)
++|+.|++.+.++
T Consensus 103 ~dG~~i~~~l~~~ 115 (120)
T cd02129 103 KDMLDIQQTFGDS 115 (120)
T ss_pred HHHHHHHHHhccC
Confidence 9999998877643
No 51
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.3e-05 Score=86.24 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003470 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+++.|+|.|.|++..||++... + ...+.+++....
T Consensus 24 ~~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~----~-----------------------~~~~s~d~~~~~----- 67 (431)
T KOG3525|consen 24 NAWCK----GYTGTRVSVTILDDGLECSHPDLRNN----Y-----------------------DPLGSYDVNRHD----- 67 (431)
T ss_pred ecccc----CCCCCceEEEEeeccccccCcccccc----c-----------------------CcceeEeeecCC-----
Confidence 56766 79999999999999999999999975 1 122222322210
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cC
Q 003470 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DG 300 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g 300 (817)
+.+.+-.+......|||-|++-++...... .=..|++|++++..++++...- ++...+...... .-
T Consensus 68 -~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~v----~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 68 -NDPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGCV----SDAVEAPSLGFGPCH 134 (431)
T ss_pred -CCcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeeec----ccceecccccCCCCC
Confidence 111111222345899999999999874211 1247999999999999886431 122222222222 34
Q ss_pred CcEEEecCCCCCCC--CCCccCCCChHHHHHHHH-----HHcCceEEEecCCCCCCCC
Q 003470 301 VDILSLSVGPNSPP--ATTKTTFLNPFDVTLLAA-----VKAGVFVAQAAGNGGPFPK 351 (817)
Q Consensus 301 ~dVIn~SlG~~~~~--~~~~~~~~~~~~~a~~~a-----~~~Gv~vV~AAGN~G~~~~ 351 (817)
+++-+.|||-.... .+. -......++.++ ..+|-+.|+|-||.|....
T Consensus 135 ~di~scsw~pddd~~t~~~---~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDG---PGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ceeecCcCCcccCCCcCCC---CcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 78899999964321 111 122233344333 3478899999999886543
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.91 E-value=4.6e-05 Score=69.55 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCc---cC----CCCCCCCeE
Q 003470 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK---FD----PVPVGIPGI 490 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~---~~----~~~~~~p~~ 490 (817)
.+.|..+.. ..+++|+|++++| |.|.|.+|..+|+++||.++|+||+....... +. .....||.+
T Consensus 21 ~~gC~~~~~--~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELRN--IHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCCC--ccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 467875332 4568999999987 68999999999999999999999986542111 11 234579999
Q ss_pred EEcCchhHHHHHHHHhcc
Q 003470 491 LITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (817)
+|.. ++|+.|.+.+...
T Consensus 93 ~Is~-~dG~~L~~~l~~g 109 (118)
T cd02127 93 FLLG-KNGYMIRKTLERL 109 (118)
T ss_pred EecH-HHHHHHHHHHHcC
Confidence 9988 9999998887754
No 53
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.84 E-value=5.5e-05 Score=70.71 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=59.2
Q ss_pred ccccccccccEEEEecccccccCcch-----HHHHHHHHHhcCceEEEEeecCCCCCC---ccCC--CCCCCCeEEEcCc
Q 003470 426 VLNKNLVEGNILLCGYSFNFVTGTAS-----IKKVSETAKSLGAAGFVLAVENVSPGT---KFDP--VPVGIPGILITDV 495 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~---~~~~--~~~~~p~~~i~~~ 495 (817)
++...+++|||+|++| |.|. |.+|+++|+++||.++|+||+....+. .+.. ....||.++|..
T Consensus 49 d~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~- 121 (139)
T cd04817 49 SYICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDR- 121 (139)
T ss_pred cccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeH-
Confidence 3445678999999988 5677 999999999999999999999744332 1222 146899999988
Q ss_pred hhHHHHHHHHhc
Q 003470 496 TKSMDLVDYYNT 507 (817)
Q Consensus 496 ~~g~~l~~~~~~ 507 (817)
++|+.|...+..
T Consensus 122 ~dG~~L~~~l~~ 133 (139)
T cd04817 122 ADGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHHhcC
Confidence 999999887754
No 54
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.75 E-value=0.00013 Score=67.47 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCC--cc-CC-CCCCCCeEEEc
Q 003470 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT--KF-DP-VPVGIPGILIT 493 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~--~~-~~-~~~~~p~~~i~ 493 (817)
...|.. ..+...+++|||++|.| |.|.+.+|..+++++||.++|+||+...... .. .. ....+|.++|.
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is 101 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVIT 101 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEc
Confidence 467854 34455678999999987 5788999999999999999999998663211 11 11 34568999998
Q ss_pred CchhHHHHHHHHhcc
Q 003470 494 DVTKSMDLVDYYNTS 508 (817)
Q Consensus 494 ~~~~g~~l~~~~~~~ 508 (817)
. ++|+.|.+++...
T Consensus 102 ~-~~G~~l~~~l~~g 115 (122)
T cd04816 102 K-AAGAALRRRLGAG 115 (122)
T ss_pred H-HHHHHHHHHHcCC
Confidence 8 9999999988643
No 55
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.73 E-value=0.00017 Score=67.71 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCCCCCcccc-ccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC-CCC-cc-CCCCCCCCeEEE
Q 003470 417 SASDCQRPEVL-NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS-PGT-KF-DPVPVGIPGILI 492 (817)
Q Consensus 417 ~~~~c~~~~~~-~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~-~~~-~~-~~~~~~~p~~~i 492 (817)
....|...... ...++.|+|+|+.| |.|.|.+|..+|+++||.++|+||+... ... .+ ......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35678765542 34578999999987 6899999999999999999999998762 111 11 122347898888
Q ss_pred cCchhHHHHHHHHhc
Q 003470 493 TDVTKSMDLVDYYNT 507 (817)
Q Consensus 493 ~~~~~g~~l~~~~~~ 507 (817)
.. ++|+.|++++..
T Consensus 117 s~-~~G~~l~~~l~~ 130 (138)
T cd02122 117 TN-PKGMEILELLER 130 (138)
T ss_pred cH-HHHHHHHHHHHc
Confidence 77 999999998864
No 56
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.72 E-value=0.00012 Score=66.64 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCC-cc----CCCCCCCCeEE
Q 003470 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT-KF----DPVPVGIPGIL 491 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~----~~~~~~~p~~~ 491 (817)
..+.|... +..+++|+|+++.| |.|.|.+|+.+++++||.++|+||+....+. .+ ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 34678644 55778999999986 6899999999999999999999998764321 11 12345789999
Q ss_pred EcCchhHHHHHHHHhc
Q 003470 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
+.. ++++.|..+...
T Consensus 97 Is~-~~g~~L~~l~~~ 111 (117)
T cd04813 97 TSR-TSYHLLSSLLPK 111 (117)
T ss_pred EcH-HHHHHHHHhccc
Confidence 976 899998877654
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.68 E-value=0.00017 Score=66.85 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC-----CC-cc--C---CCCCC
Q 003470 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-----GT-KF--D---PVPVG 486 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~-----~~-~~--~---~~~~~ 486 (817)
...|.... .+..++|||++++| |.|.|.+|..+|+++||.++|+||+.... .. .+ . .....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46786543 24568999999987 68999999999999999999999876542 11 11 1 12457
Q ss_pred CCeEEEcCchhHHHHHHHHhcc
Q 003470 487 IPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 487 ~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
||.++|.. .+|+.|.+.+...
T Consensus 99 IP~v~I~~-~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFLFS-KEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEEEH-HHHHHHHHHHHhC
Confidence 89999988 9999999888653
No 58
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.65 E-value=0.00059 Score=63.36 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCch
Q 003470 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVT 496 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~ 496 (817)
....|...... ..+++|+|+|++| |.|.+.+|+.+++++||.++|+||+....-.........+|.+.+ .+
T Consensus 40 ~~~gC~~~~~~-~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPDD-TPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCcc-cccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 44678754332 2368999999987 579999999999999999999999875421112223334566655 59
Q ss_pred hHHHHHHHHhc
Q 003470 497 KSMDLVDYYNT 507 (817)
Q Consensus 497 ~g~~l~~~~~~ 507 (817)
+|+.|++.+..
T Consensus 111 ~G~~l~~~l~~ 121 (129)
T cd02124 111 DGEAWIDALAA 121 (129)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.63 E-value=0.00024 Score=65.74 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCCCCCccccc-cc----cccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCcc----------CC
Q 003470 418 ASDCQRPEVLN-KN----LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF----------DP 482 (817)
Q Consensus 418 ~~~c~~~~~~~-~~----~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~----------~~ 482 (817)
.+.|....... +. ...++|++++| |.|.|.+|+.+|+++||.++|+||+....-..+ ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 46787654433 22 36789999987 689999999999999999999999865421111 11
Q ss_pred CCCCCCeEEEcCchhHHHHHHHHhcc
Q 003470 483 VPVGIPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 483 ~~~~~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
....||.++|.. ++|+.|.+.+...
T Consensus 96 ~~i~IP~v~Is~-~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALITK-AFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEECH-HHHHHHHHHHhcC
Confidence 234689999988 9999999887643
No 60
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.56 E-value=0.00032 Score=64.41 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCC-CccC--CCCCCCCeEEEc
Q 003470 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPG-TKFD--PVPVGIPGILIT 493 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~-~~~~--~~~~~~p~~~i~ 493 (817)
....|..... ..+++|||++|.| |.|.+..|..+++++||.++|+|++..... ..+. .....+|.+.+.
T Consensus 26 ~~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~ 97 (118)
T cd04818 26 NTDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMIS 97 (118)
T ss_pred cccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEec
Confidence 4467865443 2358999999976 468899999999999999999999876421 1111 123568999986
Q ss_pred CchhHHHHHHHHhc
Q 003470 494 DVTKSMDLVDYYNT 507 (817)
Q Consensus 494 ~~~~g~~l~~~~~~ 507 (817)
. ++++.|.+|++.
T Consensus 98 ~-~~g~~l~~~l~~ 110 (118)
T cd04818 98 Q-ADGDALKAALAA 110 (118)
T ss_pred H-HHHHHHHHHHhc
Confidence 6 999999999874
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.54 E-value=0.00034 Score=66.05 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=60.9
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC-CCccC----CCCCCCCeEEE
Q 003470 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-GTKFD----PVPVGIPGILI 492 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~-~~~~~----~~~~~~p~~~i 492 (817)
.+.|.... .+++|+|+++.| |.|.|.+|+.+++++||.++|+||+.... .+... .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999987 78999999999999999999999976532 11111 12457998888
Q ss_pred cCchhHHHHHHHHhc
Q 003470 493 TDVTKSMDLVDYYNT 507 (817)
Q Consensus 493 ~~~~~g~~l~~~~~~ 507 (817)
.. .+|+.|.+++..
T Consensus 118 s~-~~G~~L~~~l~~ 131 (139)
T cd02132 118 PQ-SAGDALNKSLDQ 131 (139)
T ss_pred cH-HHHHHHHHHHHc
Confidence 77 999999998864
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.53 E-value=0.00033 Score=67.20 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=64.2
Q ss_pred CCCCCCccc--cccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCC-----CCCCCCeE
Q 003470 418 ASDCQRPEV--LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDP-----VPVGIPGI 490 (817)
Q Consensus 418 ~~~c~~~~~--~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~-----~~~~~p~~ 490 (817)
.+.|..... .+.....|+|+++.| |.|+|.+|+.+|+++||.++|+||+.......+.. ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 457875443 133678999999987 68999999999999999999999986543222211 24589999
Q ss_pred EEcCchhHHHHHHHHhcc
Q 003470 491 LITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (817)
+|.. ++|+.|..++...
T Consensus 124 ~Is~-~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FVGK-STGEILKKYASYE 140 (153)
T ss_pred EeeH-HHHHHHHHHHhcC
Confidence 9988 9999998887653
No 63
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.49 E-value=0.0014 Score=60.47 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCC-CCC--CccCCCCCCCCeEEEcCc
Q 003470 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV-SPG--TKFDPVPVGIPGILITDV 495 (817)
Q Consensus 419 ~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~--~~~~~~~~~~p~~~i~~~ 495 (817)
..|.... + +.+++|||+++.| |.|.+.+|+.+++++||.++|+||+.. ..- .........+|.++|..
T Consensus 32 ~gC~~~~-~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~- 102 (122)
T cd02130 32 LGCDAAD-Y-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ- 102 (122)
T ss_pred CCCCccc-C-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH-
Confidence 4676322 2 2468999999987 678999999999999999999999873 211 11112245689999888
Q ss_pred hhHHHHHHHHhcc
Q 003470 496 TKSMDLVDYYNTS 508 (817)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (817)
++|+.|++.+...
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887653
No 64
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.42 E-value=0.00054 Score=63.50 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCCCCcc-ccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccC-----CCCCCCCeEE
Q 003470 418 ASDCQRPE-VLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFD-----PVPVGIPGIL 491 (817)
Q Consensus 418 ~~~c~~~~-~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-----~~~~~~p~~~ 491 (817)
...|.... .+...+++|||++|.+ |.|.+..|..+++++||.++|++++......... .....+|.+.
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred eEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEE
Confidence 34564322 1456778999999976 5688999999999999999999998763222111 1345799999
Q ss_pred EcCchhHHHHHHHHhc
Q 003470 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
|.. ++++.|..++.+
T Consensus 104 is~-~~g~~l~~~~~~ 118 (126)
T cd00538 104 ISY-ADGEALLSLLEA 118 (126)
T ss_pred eCH-HHHHHHHHHHhc
Confidence 976 999999999874
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.10 E-value=0.0073 Score=56.10 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccccccccccEEEEecccccccCcc--hHHHHHHHHHhcCceEEEEeecCCCCCC--c---c-CCCCCCCCeEEEcCchh
Q 003470 426 VLNKNLVEGNILLCGYSFNFVTGTA--SIKKVSETAKSLGAAGFVLAVENVSPGT--K---F-DPVPVGIPGILITDVTK 497 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~--~~~~~~~~~~~~Ga~~~i~~~~~~~~~~--~---~-~~~~~~~p~~~i~~~~~ 497 (817)
++...+++|||+++.++ .+ .+..++.++.++||.++|++|+....-. . . ......+|.+.|.. ++
T Consensus 37 d~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~-ed 109 (127)
T cd04819 37 DFDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSG-ED 109 (127)
T ss_pred HcCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeH-HH
Confidence 34455689999999874 44 6889999999999999999986544211 1 1 12345799999988 99
Q ss_pred HHHHHHHHhc
Q 003470 498 SMDLVDYYNT 507 (817)
Q Consensus 498 g~~l~~~~~~ 507 (817)
++.|...++.
T Consensus 110 g~~L~~~l~~ 119 (127)
T cd04819 110 GLRLARVAER 119 (127)
T ss_pred HHHHHHHHhc
Confidence 9999988864
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.28 E-value=0.12 Score=45.79 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=59.1
Q ss_pred eEEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEEEeEE
Q 003470 733 TQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVI 811 (817)
Q Consensus 733 ~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP~~ 811 (817)
..+.+.+|+|.+.. ..|.+.........+++++..-.|+||++.+++|+|.++...+ .+++.|.+.-. +..+.||.-
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g-~~~~~l~i~~e-~~~~~i~v~ 98 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLG-DYEGSLVITTE-GGSFEIPVK 98 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCc-eEEEEEEEEEC-CeEEEEEEE
Confidence 34456689999999 8999876432344577788888899999999999999755444 46799998854 457788865
Q ss_pred EE
Q 003470 812 AQ 813 (817)
Q Consensus 812 ~~ 813 (817)
+.
T Consensus 99 a~ 100 (102)
T PF14874_consen 99 AE 100 (102)
T ss_pred EE
Confidence 44
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.71 E-value=0.038 Score=46.47 Aligned_cols=56 Identities=32% Similarity=0.411 Sum_probs=36.3
Q ss_pred eEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeE-EEcCCCEEEEEEEEEEecCC
Q 003470 733 TQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAM-TLKPGASRKFTVTLTVRSVT 788 (817)
Q Consensus 733 ~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~-tv~~g~~~~~~v~~~~~~~~ 788 (817)
..+++.+|+|.+.. ...+++...|.|-++...+.++ .|+||+++++++++++|...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 45677899999976 5678888889988766777666 69999999999999998754
No 68
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=94.89 E-value=0.095 Score=49.13 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.8
Q ss_pred ccccccccccEEEEecccccccCcchHHHH-------HHHHHhcCceEEEEeecCCC------CCCccC-CCCCCCCeEE
Q 003470 426 VLNKNLVEGNILLCGYSFNFVTGTASIKKV-------SETAKSLGAAGFVLAVENVS------PGTKFD-PVPVGIPGIL 491 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~~~i~~~~~~~------~~~~~~-~~~~~~p~~~ 491 (817)
.+...+++|||+++.++.........+..+ ...+++.||.++|++|.... .|.... .....+|.+.
T Consensus 32 ~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 32 AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 344568999999997742211111156565 79999999999999996422 222111 2234699999
Q ss_pred EcCchhHHHHHHHHhc
Q 003470 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
|.. ++++.|...+..
T Consensus 112 is~-ed~~~L~r~l~~ 126 (134)
T cd04815 112 ISV-EDADMLERLAAR 126 (134)
T ss_pred ech-hcHHHHHHHHhC
Confidence 988 999999887764
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.88 E-value=0.3 Score=44.60 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=39.6
Q ss_pred EEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCC
Q 003470 735 VVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVT 788 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~ 788 (817)
.++..|.|.+.. .+|++++....++.+......++|+||++.++.|.+..|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 466789999999 999999998889888665689999999999999999998753
No 70
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.88 E-value=0.44 Score=43.69 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=48.5
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEEc----CCCc--------------E------EEEecCeEEEcCCCEEEEEEEEEEec
Q 003470 732 KTQVVTRTVTNVAEE-ETYSMSARM----QPAI--------------A------IEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~~----~~~~--------------~------v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
.++++..+|+|.+++ .+|.+.... ..|+ . +++ +..|+|+||++++|+++++.|.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcCC
Confidence 456788899999999 898887532 1110 0 222 4569999999999999999987
Q ss_pred C-CCceEEEEEEEE
Q 003470 787 V-TGTYSFGEICMK 799 (817)
Q Consensus 787 ~-~~~~~~G~i~~~ 799 (817)
. -.+.+-|-|.++
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 5 345556778876
No 71
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=93.38 E-value=0.33 Score=45.68 Aligned_cols=71 Identities=18% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccc------cCc------chHHHHHHHHHhc
Q 003470 395 GNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFV------TGT------ASIKKVSETAKSL 462 (817)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~------~g~------~~~~~~~~~~~~~ 462 (817)
.....++++.+... ....|. ..+|...+++|||+++.++.... .+. .++..|...+.++
T Consensus 18 ~~~~aelVfvGyGi--------~a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~ 88 (142)
T cd04814 18 AIKDAPLVFVGYGI--------KAPELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARH 88 (142)
T ss_pred cccceeeEEecCCc--------CCCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHC
Confidence 34456676655332 122343 24677778999999998752200 011 1577899999999
Q ss_pred CceEEEEeecCC
Q 003470 463 GAAGFVLAVENV 474 (817)
Q Consensus 463 Ga~~~i~~~~~~ 474 (817)
||.++|++++..
T Consensus 89 GA~gvIii~~~~ 100 (142)
T cd04814 89 GAAGVLIVHELA 100 (142)
T ss_pred CCcEEEEEeCCC
Confidence 999999999755
No 72
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=93.19 E-value=0.85 Score=42.39 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=53.9
Q ss_pred EEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEe
Q 003470 736 VTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKG 800 (817)
Q Consensus 736 ~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 800 (817)
+...+-|.... +..+++........+.-.|..++|.|++.+++..++++.+...+.++|+|++..
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 33456777766 667777766667777778999999999999999999999999999999999863
No 73
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.09 E-value=0.13 Score=50.49 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=34.4
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003470 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
..+++|||+|+.+ |.|.+.+|+.+|+++||+++|+|++.
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 3578999999987 56788999999999999999999874
No 74
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.06 E-value=0.52 Score=44.91 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=39.6
Q ss_pred cccccccccccEEEEecccc--------c----ccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003470 425 EVLNKNLVEGNILLCGYSFN--------F----VTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~--------~----~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
..+...+++|||+++.++.. + ....|.+..|..+|.+.||.++|+|++....
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 45566789999999987631 0 0122678899999999999999999986654
No 75
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.26 E-value=1.2 Score=41.60 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=37.6
Q ss_pred cccccccccccEEEEecccccccC------cchHHHHHHHHHhcCceEEEEeecCCC
Q 003470 425 EVLNKNLVEGNILLCGYSFNFVTG------TASIKKVSETAKSLGAAGFVLAVENVS 475 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~~~~g------~~~~~~~~~~~~~~Ga~~~i~~~~~~~ 475 (817)
.++...+++|||+++.++.....+ ...+..|.++|.++||.++|++++...
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 355667899999999885321111 124778999999999999999997543
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=90.39 E-value=0.74 Score=46.78 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=34.5
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003470 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
..+++|||+|+.++ .+....|+.+|+++||.++|+|++....
T Consensus 67 gvdv~GKIvLvr~G------~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 67 GIDVKGKIVIARYG------GIFRGLKVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred CCCCCCeEEEEECC------CccHHHHHHHHHHcCCEEEEEEeCchhc
Confidence 45789999999764 4555789999999999999999986543
No 77
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.19 E-value=0.66 Score=51.22 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=54.1
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC-----CCCccCCCCCCCCeEEEcCchhHHHHHH
Q 003470 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS-----PGTKFDPVPVGIPGILITDVTKSMDLVD 503 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~-----~~~~~~~~~~~~p~~~i~~~~~g~~l~~ 503 (817)
....+||++++.| |+|.|..|.+.|+++||.++++.|+..+ .+.........||...|.. ++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~-~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISY-SDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEh-hhHHHHHh
Confidence 4567899999876 7999999999999999999999998433 1233344567899999988 88887765
No 78
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=90.10 E-value=0.39 Score=45.24 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=33.9
Q ss_pred ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003470 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
-+++|||+|+..+ ....-.|+++|++.||.|+|+|.+....
T Consensus 37 V~v~GkIvi~RyG------~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 37 MNVTNQIALLKLG------QAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred CCccceEEEEecc------CcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 4689999999874 3456789999999999999999976543
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.17 E-value=2.3 Score=47.11 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=54.1
Q ss_pred eEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeEE-EcCCCEEEEEEEEEEecCCC-ceEEEEEEEEeC
Q 003470 733 TQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAMT-LKPGASRKFTVTLTVRSVTG-TYSFGEICMKGS 801 (817)
Q Consensus 733 ~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~t-v~~g~~~~~~v~~~~~~~~~-~~~~G~i~~~~~ 801 (817)
.+++...+.|.|+. ..-++++..|.|-.+++++.+|- |+||++.+|++|+++|.... .-|.=.|+.++|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 45677789999987 66788999999999999998774 78999999999999987543 234445555554
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.52 E-value=10 Score=42.22 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEE-cCCCcEEEEec-----CeEEEcCCCEEEEEEEEEEecC
Q 003470 732 KTQVVTRTVTNVAEE-ETYSMSAR-MQPAIAIEVNP-----PAMTLKPGASRKFTVTLTVRSV 787 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~-~~~~~~v~~~~-----~~~tv~~g~~~~~~v~~~~~~~ 787 (817)
.+..|+.++.|.+.. .+|.++.. .|.+-+..|.. +++.|.||++++|+|.+.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 345788899999999 99999998 67776555543 4788999999999999999764
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=83.83 E-value=16 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=39.9
Q ss_pred EEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCC
Q 003470 734 QVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSR 802 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~ 802 (817)
..+.++++|.|.. .++++.-..-. .-.|.+++|+||++.++.+.+ ...+.||+ ++++..+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~ag~~~~~~w~l---~~s~gwYD--l~v~~~~ 80 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAAGQTVSLTWPL---AASGGWYD--LTVTGPN 80 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECCCCEEEEEEee---cCCCCcEE--EEEEcCC
Confidence 4677899999988 77777652111 112678999999998888877 23445665 5555433
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=82.93 E-value=6.9 Score=44.23 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=45.4
Q ss_pred EEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003470 735 VVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
..+..+.|.+.. .+|++++...+++.++..+..|+|+||++.++.|.+..+.
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEech
Confidence 456689999998 9999999988888888765689999999999999999875
No 83
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=82.24 E-value=5.6 Score=33.47 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=35.5
Q ss_pred EEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEE
Q 003470 760 AIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVN 807 (817)
Q Consensus 760 ~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~ 807 (817)
.|+++|..++|+.|++..|++++++....+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999987654432 577889887665555
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.71 E-value=0.91 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=21.9
Q ss_pred CCCCCceEEEEecceecCCCCCCC
Q 003470 151 DRAGEDIVIGFVDSGIYPHHPSFG 174 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~ 174 (817)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 489999999999999999888775
No 85
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=81.30 E-value=13 Score=33.90 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEEEEEEEcCCC-ceEEEEEEc---CC----CcEEEEecCeEEEcCCCEEEEEEEEEEec-CCCceEEEEEEEEe
Q 003470 735 VVTRTVTNVAEE-ETYSMSARM---QP----AIAIEVNPPAMTLKPGASRKFTVTLTVRS-VTGTYSFGEICMKG 800 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~---~~----~~~v~~~~~~~tv~~g~~~~~~v~~~~~~-~~~~~~~G~i~~~~ 800 (817)
..+.+|+|.++. ..+.+.+.. .. .-.+-++|..++|+||+++.|.| +..+. ..+....=+|.++.
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 445689999997 666666653 11 11577899999999999999999 66433 23444445677764
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=79.58 E-value=13 Score=32.23 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=34.3
Q ss_pred ceEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeE-EEcCCCEEEEEEEEEEe
Q 003470 732 KTQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAM-TLKPGASRKFTVTLTVR 785 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~-tv~~g~~~~~~v~~~~~ 785 (817)
...+++.+|+|.|.. ..+++.+.... ..+ ....| .|+||++.++++++.++
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~-~~~--~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDG-NSV--STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETT-EEE--EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECC-cee--ccEEECCcCCCcEEEEEEEEEeC
Confidence 345677899999998 66777765432 222 23445 77899999999999987
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=4.1 Score=44.02 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=46.8
Q ss_pred cccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCc---cCCCCCCCCeEEEcCchhHHHHHHHH
Q 003470 431 LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK---FDPVPVGIPGILITDVTKSMDLVDYY 505 (817)
Q Consensus 431 ~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~---~~~~~~~~p~~~i~~~~~g~~l~~~~ 505 (817)
.....++++.| |.|+|.+|+.+||++|..++|+||+....... .......++.+++.. ..|+.+..|.
T Consensus 77 ~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~-~~ge~l~~~~ 147 (348)
T KOG4628|consen 77 RSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSV-FSGELLSSYA 147 (348)
T ss_pred CCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEee-ehHHHHHHhh
Confidence 34556777766 67999999999999999999999976553222 123344566666655 5566555543
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=73.34 E-value=12 Score=27.63 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=25.9
Q ss_pred EEEEEcCCCceEEEE-EEcCCCcEEEEecCeEEEcCCCEEEEEEEE
Q 003470 738 RTVTNVAEEETYSMS-ARMQPAIAIEVNPPAMTLKPGASRKFTVTL 782 (817)
Q Consensus 738 ~tv~n~~~~~ty~~~-~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~ 782 (817)
.+++|.|+. ...+. +...-|= ++++..+=.++||++..++|++
T Consensus 2 F~~~N~g~~-~L~I~~v~tsCgC-t~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDS-PLVITDVQTSCGC-TTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCC-cEEEEEeeEccCC-EEeeCCcceECCCCEEEEEEEC
Confidence 368999886 22222 2222221 2333455669999999999874
No 89
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=72.22 E-value=17 Score=32.12 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=38.3
Q ss_pred EEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003470 734 QVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
.....+|+|.++. ..|++.-..+.. ..+.|..-.|.||++.++.|++.+..
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE-TTEEEEEEEEE-SSS
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEECCCCEEEEEEEEEecc
Confidence 3445689999999 889988766654 56779999999999999999998843
No 90
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=64.32 E-value=42 Score=31.06 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred eEEEEEEEEEcCCCceEEEE------EEcCCCcEEEE-------ecCeEEEcCCCEEEEEEEEEEecCCCc---eEEEEE
Q 003470 733 TQVVTRTVTNVAEEETYSMS------ARMQPAIAIEV-------NPPAMTLKPGASRKFTVTLTVRSVTGT---YSFGEI 796 (817)
Q Consensus 733 ~~~~~~tv~n~~~~~ty~~~------~~~~~~~~v~~-------~~~~~tv~~g~~~~~~v~~~~~~~~~~---~~~G~i 796 (817)
...+.+++||.++. +.++. +....|..+.. .+..++|+||++..+.|+.......+. ..--.|
T Consensus 19 ~~~~~l~~tN~s~~-~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~~~~~~~~~~~~~~l 97 (131)
T PF14016_consen 19 QRHATLTFTNTSDT-PCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNVGSGGGCKPVTPAGL 97 (131)
T ss_pred ccEEEEEEEECCCC-cEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecCCCCCCcCccccCEE
Confidence 34567789998885 33332 22222221111 256799999999999999988654332 222334
Q ss_pred EEEe-CCCcEEEEeE
Q 003470 797 CMKG-SRGHKVNIPV 810 (817)
Q Consensus 797 ~~~~-~~~~~l~iP~ 810 (817)
.+.. ++...+.+|+
T Consensus 98 ~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 98 TVTPPGGTAPVTVPW 112 (131)
T ss_pred EEECCCCCccEEEeC
Confidence 5544 4445666665
No 91
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=62.51 E-value=7.4 Score=32.50 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=32.9
Q ss_pred EEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEE
Q 003470 760 AIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKV 806 (817)
Q Consensus 760 ~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l 806 (817)
.|+++|..+++..|++..|.+++.+..... ..+.|++++....
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~----~~v~w~ssn~~ia 46 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSN----SKVTWSSSNPSIA 46 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTT----SCEEEEESSTTTE
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcE----eEEEEEeCCCeEE
Confidence 478889999999999999999999977654 3466666544333
No 92
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=58.70 E-value=20 Score=34.49 Aligned_cols=49 Identities=22% Similarity=0.168 Sum_probs=34.9
Q ss_pred cccccccccccEEEEecccc-ccc------Cc------chHHHHHHHHHhcCceEEEEeecC
Q 003470 425 EVLNKNLVEGNILLCGYSFN-FVT------GT------ASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~-~~~------g~------~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
.+|...+++|||+++..+.. +.. +. .+...|...+.+.||.++|++.+.
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 35667789999999886432 110 11 134568999999999999999764
No 93
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=56.64 E-value=67 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=14.7
Q ss_pred CeEEEcCCCEEEEEEEEEEec
Q 003470 766 PAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 766 ~~~tv~~g~~~~~~v~~~~~~ 786 (817)
...+|+||++.++..++....
T Consensus 52 ~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 52 QEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEE-TT-EEEEEEEESS--
T ss_pred eEEEECCCCEEEEEEEECCCC
Confidence 478999999999998886654
No 94
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=53.28 E-value=88 Score=32.24 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=40.8
Q ss_pred EEEEEEEcCCC-ceEEEEEE---cC---C----------CcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEE
Q 003470 736 VTRTVTNVAEE-ETYSMSAR---MQ---P----------AIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICM 798 (817)
Q Consensus 736 ~~~tv~n~~~~-~ty~~~~~---~~---~----------~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~ 798 (817)
...+|.|.|++ ..+++++. .| . .-.+-++|..++|+||+++.|.|.-.-+.....+| +|.|
T Consensus 35 ~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~Y--Rl~~ 112 (234)
T PRK15308 35 TSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVISLQAPEREEAW--RVYF 112 (234)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEEcCCCCcEEEE--EEEE
Confidence 34578888888 66666542 11 0 11477899999999999999998765544333333 3555
Q ss_pred Ee
Q 003470 799 KG 800 (817)
Q Consensus 799 ~~ 800 (817)
.+
T Consensus 113 ~p 114 (234)
T PRK15308 113 EP 114 (234)
T ss_pred Ee
Confidence 43
No 95
>PLN03080 Probable beta-xylosidase; Provisional
Probab=49.17 E-value=59 Score=39.98 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=43.9
Q ss_pred EEEEEEEEEcCCC-ceEEEE--EEcCCC-c--EEE--EecCeEEEcCCCEEEEEEEEEE-ecC-----CCceE--EEE-E
Q 003470 734 QVVTRTVTNVAEE-ETYSMS--ARMQPA-I--AIE--VNPPAMTLKPGASRKFTVTLTV-RSV-----TGTYS--FGE-I 796 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~--~~~~~~-~--~v~--~~~~~~tv~~g~~~~~~v~~~~-~~~-----~~~~~--~G~-i 796 (817)
-+++.+|||+|+. ..-.+. +..+.. . .++ ..-+++.|+|||+++|++++++ ..- .+.|+ .|. .
T Consensus 686 ~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~ 765 (779)
T PLN03080 686 FNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHV 765 (779)
T ss_pred EEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEE
Confidence 4577899999998 444333 333321 1 000 1124788999999999999986 331 22332 243 3
Q ss_pred EEEeCCCcEEEEe
Q 003470 797 CMKGSRGHKVNIP 809 (817)
Q Consensus 797 ~~~~~~~~~l~iP 809 (817)
.+-++..|.|+++
T Consensus 766 l~vG~~~~~~~~~ 778 (779)
T PLN03080 766 LMLGDLEHSLSIE 778 (779)
T ss_pred EEEeCCccceEEe
Confidence 3345556677664
No 96
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=48.34 E-value=79 Score=34.15 Aligned_cols=52 Identities=31% Similarity=0.423 Sum_probs=30.8
Q ss_pred EEEEEEEEEcCCC-ceEEEEEEcC----CCcEEEEecC--------------eEEEcCCCEEEEEEEEEEe
Q 003470 734 QVVTRTVTNVAEE-ETYSMSARMQ----PAIAIEVNPP--------------AMTLKPGASRKFTVTLTVR 785 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~~~~~----~~~~v~~~~~--------------~~tv~~g~~~~~~v~~~~~ 785 (817)
..++++|+|..+. .+.++....| ..+.|++... .++|+||+++++.+.+.+.
T Consensus 244 ~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred EEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 3455688888877 6666665543 1233333211 4677777777777776654
No 97
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=47.97 E-value=19 Score=33.84 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCc-----c----CCCCCCC
Q 003470 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK-----F----DPVPVGI 487 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~-----~----~~~~~~~ 487 (817)
....|++. -+.-...|.|++++| |.|+|..|..+++++||..+|+-.+....... + ......+
T Consensus 73 Pp~aC~el--rN~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~Ani 144 (193)
T KOG3920|consen 73 PPHACEEL--RNEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANI 144 (193)
T ss_pred ChhHHHHH--hhcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCC
Confidence 34567543 233456788999887 79999999999999999999998765443211 1 1123567
Q ss_pred CeEEEcC
Q 003470 488 PGILITD 494 (817)
Q Consensus 488 p~~~i~~ 494 (817)
|++++..
T Consensus 145 Pa~fllg 151 (193)
T KOG3920|consen 145 PAVFLLG 151 (193)
T ss_pred ceEEEec
Confidence 7777655
No 98
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=46.92 E-value=11 Score=21.81 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.1
Q ss_pred chhhhHHHHHHHHHh
Q 003470 3 AAEFLCIFIVLFTIF 17 (817)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (817)
|++++++|++|+.+.
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 345556666555543
No 99
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.45 E-value=54 Score=38.89 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=51.5
Q ss_pred EEEEcCCC--ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEe
Q 003470 739 TVTNVAEE--ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKG 800 (817)
Q Consensus 739 tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 800 (817)
.+-|-.++ +..++....-.++.+..-|+-++|.|.....++.||++.+..++++||.|++..
T Consensus 741 L~VNqT~~tLQNl~lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsStenGvIfGnIvY~~ 804 (948)
T KOG1058|consen 741 LLVNQTKETLQNLSLELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNIVYDT 804 (948)
T ss_pred EEecCChHHHhhheeeeeeccCceeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEEEecC
Confidence 45565555 555666655677888888999999999999999999999999999999999986
No 100
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=41.92 E-value=66 Score=39.52 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=34.2
Q ss_pred eEEEEEEEEEcCCC-ceE--EEEEEcCCCcEEE------EecCeEEEcCCCEEEEEEEEEEec
Q 003470 733 TQVVTRTVTNVAEE-ETY--SMSARMQPAIAIE------VNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 733 ~~~~~~tv~n~~~~-~ty--~~~~~~~~~~~v~------~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
.-+++.+|+|+|+. ..- .+-+..+.+ .+. ..=.++.|+|||+++|++++....
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTA-SMSRPVKELKGFEKIMLKPGETQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCC-CCCCHHHhccCceeEeECCCCeEEEEEeecHHH
Confidence 35677899999998 333 333333322 111 011478899999999999998754
No 101
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=41.45 E-value=12 Score=16.91 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=4.2
Q ss_pred cccCCC
Q 003470 543 LFSARG 548 (817)
Q Consensus 543 ~fSS~G 548 (817)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 102
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=41.02 E-value=2.4e+02 Score=24.47 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=31.8
Q ss_pred cceEEEEEEEEEcCCC---ceEEEEEEcCCCcEEEEe---cCeEEEcCCCEEEEEEE
Q 003470 731 VKTQVVTRTVTNVAEE---ETYSMSARMQPAIAIEVN---PPAMTLKPGASRKFTVT 781 (817)
Q Consensus 731 ~~~~~~~~tv~n~~~~---~ty~~~~~~~~~~~v~~~---~~~~tv~~g~~~~~~v~ 781 (817)
.+......+++|.... ..|.+.+-...|+.+.-. ..+++|+++++.+|.-.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 3445566789999877 568888888889876532 13899999998777643
No 103
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=35.55 E-value=69 Score=34.04 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=49.5
Q ss_pred eeeccCCCcEEEEEeeecCCC------CC-------HHH---HHHHHHHHHHcCCcEEEecCCCCCCC-------CCCcc
Q 003470 263 ASGMAPRARIAVYKALYRLFG------GF-------VAD---VVAAIDQAVHDGVDILSLSVGPNSPP-------ATTKT 319 (817)
Q Consensus 263 ~~GVAP~A~L~~~kv~~~~~~------~~-------~~d---i~~ai~~a~~~g~dVIn~SlG~~~~~-------~~~~~ 319 (817)
++-+||-++|-+-..++...+ +. .+. =+.-+++|+++|.+||+ |-|...-. .|-..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 456889888877655554321 11 111 25668899999999997 55643211 11134
Q ss_pred CCCChHHHHHHH-HHH----cCceEEEec
Q 003470 320 TFLNPFDVTLLA-AVK----AGVFVAQAA 343 (817)
Q Consensus 320 ~~~~~~~~a~~~-a~~----~Gv~vV~AA 343 (817)
...||+++++++ +++ .||.||+|+
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEec
Confidence 566899998864 333 477888875
No 104
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=34.88 E-value=95 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.339 Sum_probs=29.1
Q ss_pred ceEEEEEEEEEcCCC-ce----EEEEE---------EcCCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ET----YSMSA---------RMQPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~t----y~~~~---------~~~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
+..+++.+|+|.|+. .. |.+-- ...-|-.+.+ +.+.+.++||++++|++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 344566789999997 22 11100 0112223333 235788999999999874
No 105
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=33.03 E-value=1.1e+02 Score=26.75 Aligned_cols=49 Identities=16% Similarity=0.368 Sum_probs=29.2
Q ss_pred ceEEEEEEEEEcCCC-ce----EEEEEEc----------CCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ET----YSMSARM----------QPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~t----y~~~~~~----------~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
+..+++.+|+|.|+. .. |.+- +. .-|-.+.+ +.+.+.++||++++|++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~-E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFF-EVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchh-hcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 344566789999997 22 1110 11 12323333 235788999999998864
No 106
>PRK13203 ureB urease subunit beta; Reviewed
Probab=32.50 E-value=1.1e+02 Score=26.91 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=29.1
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEE----Ec----------CCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ETYSMSA----RM----------QPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~----~~----------~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
+..+++++|+|+|+. ..- -+| +. .-|-.+.+ +.+.+.++||++++|++-
T Consensus 18 gr~~~~l~V~NtGDRPIQV-GSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQV-GSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEE-ccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 344567789999997 221 011 11 12222333 235788999999998864
No 107
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.36 E-value=1.1e+02 Score=26.91 Aligned_cols=47 Identities=9% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEEEEEEEcCCC-ce----EEEEEEc----------CCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 734 QVVTRTVTNVAEE-ET----YSMSARM----------QPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~t----y~~~~~~----------~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
.+++.+|+|.|+. .. |.+- +. .-|-.+.+ +.+.+.++||++++|++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~-E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLP-QANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchh-hcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4567799999997 22 1110 11 12222333 235788999999998874
No 108
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.23 E-value=1.8e+02 Score=25.60 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=33.6
Q ss_pred eEEEEEEEEEcCCC--ceEEEEE--E--cCCCcE---EEEecCeEEEcCCCEEEEEEEEEEec
Q 003470 733 TQVVTRTVTNVAEE--ETYSMSA--R--MQPAIA---IEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 733 ~~~~~~tv~n~~~~--~ty~~~~--~--~~~~~~---v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
...+..+++|..+. .+-++.. . .-.|+. +......++|+||++.++.+++.+..
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 34566789998886 2222211 1 124553 45556789999999999999998865
No 109
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=30.87 E-value=1.7e+02 Score=25.34 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=21.9
Q ss_pred CeEEEcCCCEEEEEEE----EEEecCCCceEEEEEEE
Q 003470 766 PAMTLKPGASRKFTVT----LTVRSVTGTYSFGEICM 798 (817)
Q Consensus 766 ~~~tv~~g~~~~~~v~----~~~~~~~~~~~~G~i~~ 798 (817)
.+|+|.||++++|+++ +.+-.....+++|+..+
T Consensus 54 ~tftV~pG~S~S~T~~~~~sI~I~~~~~g~~~G~~C~ 90 (92)
T PF13157_consen 54 NTFTVQPGNSRSFTVRDFQSIQIVTTPTGTIEGEFCI 90 (92)
T ss_pred eEEEECCCceEEEEeccceEEEEEeCCCcEEEEEEEE
Confidence 4799999999999974 22222333456677655
No 110
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=30.54 E-value=48 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.2
Q ss_pred CeEEEcCCCEEEEEEEEEEec
Q 003470 766 PAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 766 ~~~tv~~g~~~~~~v~~~~~~ 786 (817)
.++.|+||+++++++++++.+
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~ 45 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPED 45 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHH
T ss_pred EEEEECCCCEEEEEEEECHHH
Confidence 567899999999999998854
No 111
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.97 E-value=5.8e+02 Score=26.16 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred EEEEEEEEEcCCCceEEEEE--Ec---CCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEe
Q 003470 734 QVVTRTVTNVAEEETYSMSA--RM---QPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKG 800 (817)
Q Consensus 734 ~~~~~tv~n~~~~~ty~~~~--~~---~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 800 (817)
...+.+|+|.++. +|-+.. .. .....+-++|.-+.++||+++.+.|....+...+...-=||.+.+
T Consensus 40 ~~~si~v~N~~~~-p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~drEs~f~l~v~~ 110 (230)
T PRK09918 40 GEGSINVKNTDSN-PILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPLNTEHLLRVSFEG 110 (230)
T ss_pred CeEEEEEEcCCCC-cEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCCeeEEEEEEEEE
Confidence 3455688998874 444432 11 112357888999999999999998876533233333223455553
No 112
>PRK15019 CsdA-binding activator; Provisional
Probab=28.82 E-value=54 Score=31.12 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=27.9
Q ss_pred EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003470 593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626 (817)
Q Consensus 593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 626 (817)
-.+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444556 68999999999999999999999876
No 113
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.72 E-value=2.4e+02 Score=32.93 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=33.1
Q ss_pred EEEEEEEEEcCCC-ceEEEEEEcC----CCcEEEEe-c------------C----eEEEcCCCEEEEEEEEEEecCC
Q 003470 734 QVVTRTVTNVAEE-ETYSMSARMQ----PAIAIEVN-P------------P----AMTLKPGASRKFTVTLTVRSVT 788 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~~~~~----~~~~v~~~-~------------~----~~tv~~g~~~~~~v~~~~~~~~ 788 (817)
..++++|+|..+. .+-++....| ..+.|.+. + . .|+|+||++++|.+.+++.-+.
T Consensus 444 ~~~~i~v~N~~~~~v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v~~P~ 520 (525)
T TIGR02231 444 YAYRITLKNLRKEPERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKVEHPK 520 (525)
T ss_pred EEEEEEEEcCCCCceEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEEecCC
Confidence 3455688998887 6666665544 22333321 1 0 3677888888887777765443
No 114
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=28.55 E-value=50 Score=22.54 Aligned_cols=13 Identities=62% Similarity=0.802 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHH
Q 003470 600 MAAPHIAGIAALV 612 (817)
Q Consensus 600 mAaP~VAG~aALl 612 (817)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998755
No 115
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=27.99 E-value=55 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHhccc
Q 003470 609 AALVKQKHPYWSPAAIKSALMTTT 632 (817)
Q Consensus 609 aALl~q~~p~ls~~~ik~~L~~TA 632 (817)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999996543
No 116
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=27.46 E-value=60 Score=30.49 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.4
Q ss_pred EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003470 593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
-.+.|.| =|+.|-|.+|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 117
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.40 E-value=4.4e+02 Score=25.98 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred ceEEEEEEEEEcCCCceEEEEEEc----CCCcEEEEecCe---EEEcCCCEEEEEEEEEEec
Q 003470 732 KTQVVTRTVTNVAEEETYSMSARM----QPAIAIEVNPPA---MTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~~ty~~~~~~----~~~~~v~~~~~~---~tv~~g~~~~~~v~~~~~~ 786 (817)
..-+++++|-|.|+..-|.+++.. +..+.+.-...+ =+++||++.+.++++.+..
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 345678899999998667777654 123333111111 2578999999999998754
No 118
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.15 E-value=4e+02 Score=23.83 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=45.9
Q ss_pred eecc-CCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHc-CceEEE
Q 003470 264 SGMA-PRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQ 341 (817)
Q Consensus 264 ~GVA-P~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~ 341 (817)
.+.. ++++|+.+- .+ +++....++.-++++.+.|+|+|-+|--.....+.+ .--.++.......++ |+-||.
T Consensus 31 ~~y~~~~~elvgf~--~C-gGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~---~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGFF--TC-GGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG---PCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEEe--eC-CCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC---CCCCHHHHHHHHHHHhCCCEee
Confidence 4444 568888763 33 356677888889999999999999987654432111 111244444455555 888874
No 119
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=25.38 E-value=4.5e+02 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEEEEcCCC--ceEEEEEEcCCCcEE
Q 003470 736 VTRTVTNVAEE--ETYSMSARMQPAIAI 761 (817)
Q Consensus 736 ~~~tv~n~~~~--~ty~~~~~~~~~~~v 761 (817)
..++|+|.++. ..|++++..+.+.+|
T Consensus 17 ~~v~v~N~~~~~i~~W~v~~~~~~~~~i 44 (101)
T PF00553_consen 17 GEVTVTNNGSSPINGWTVTFTFPSGQTI 44 (101)
T ss_dssp EEEEEEESSSSTEESEEEEEEESTTEEE
T ss_pred EEEEEEECCCCccCCEEEEEEeCCCCEE
Confidence 35689998887 468888887755443
No 120
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=24.69 E-value=1.4e+02 Score=26.21 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=25.3
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEE----Ec----------CCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ETYSMSA----RM----------QPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~----~~----------~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
+..+++.+|+|+|+. ..- -+| +. .-|-.+.+ +.+.+.++||++++|++.
T Consensus 17 gr~~~~l~V~N~GDRPIQV-GSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQV-GSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEE-ETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEE-ccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 445677799999997 220 011 11 12223333 134788899999998864
No 121
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.17 E-value=75 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.4
Q ss_pred eecCccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003470 594 LISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626 (817)
Q Consensus 594 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 626 (817)
.+.|.| =|+.|-|.+||+.+.+-..+|+||.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444556 68999999999999999999999875
No 122
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.57 E-value=1.2e+02 Score=21.32 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=5.2
Q ss_pred CCCeEEEE
Q 003470 20 GRAEVYIV 27 (817)
Q Consensus 20 ~~~~~yiV 27 (817)
..++.+||
T Consensus 21 ~~pG~ViI 28 (36)
T PF08194_consen 21 ATPGNVII 28 (36)
T ss_pred CCCCeEEE
Confidence 34777766
No 123
>PRK13205 ureB urease subunit beta; Reviewed
Probab=23.48 E-value=1.9e+02 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=30.0
Q ss_pred ceEEEEEEEEEcCCC-ce----EEEEEE---------cCCCcEEEE-ecCeEEEcCCCEEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ET----YSMSAR---------MQPAIAIEV-NPPAMTLKPGASRKFTVTL 782 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~t----y~~~~~---------~~~~~~v~~-~~~~~tv~~g~~~~~~v~~ 782 (817)
+..+++++|+|+|+. .. |.+--. ..-|-.+.+ +...+.++||++++|+|.-
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~ 83 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVA 83 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 445567799999997 22 111000 112223333 2357889999999998753
No 124
>PRK13201 ureB urease subunit beta; Reviewed
Probab=23.32 E-value=2e+02 Score=26.53 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=29.5
Q ss_pred ceEEEEEEEEEcCCC-ce----EEEEE---------EcCCCcEEEE-ecCeEEEcCCCEEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ET----YSMSA---------RMQPAIAIEV-NPPAMTLKPGASRKFTVTL 782 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~t----y~~~~---------~~~~~~~v~~-~~~~~tv~~g~~~~~~v~~ 782 (817)
+..+++++|+|+|+. .. |.+-- ...-|-.+.+ +.+.+.++||++++|+|.-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 83 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE 83 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 344567789999997 22 11100 0112223333 2357889999999998753
No 125
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=23.02 E-value=91 Score=34.36 Aligned_cols=60 Identities=23% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003470 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
++-......-||+. -..||+.+||+...|+.+.+-.. ..=..-+=|=.|+|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL---------g~~~gvL~~gE~c~STSNRNF~G------RqG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL---------GMHPGVLGPGERCASTSNRNFEG------RQGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc---------ccCCCcCCCCCEEeeccCCCCCc------cCCCCCCeEEecCHHHHHHHHhh
Confidence 34556667788987 46789999999999998665321 11112234667999999999974
No 126
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=22.69 E-value=3.5e+02 Score=23.63 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=36.5
Q ss_pred ceEEEEEEEEEcCCC---ceEEEEEEcCCCcEEEEe---cCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE---ETYSMSARMQPAIAIEVN---PPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~---~ty~~~~~~~~~~~v~~~---~~~~tv~~g~~~~~~v~ 781 (817)
+......+|+|.... ..|.+.+-...|+.+.-. ...++|+++++.++.-.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 334556689999865 678999888888777543 34899999888776643
No 127
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=22.66 E-value=87 Score=28.87 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=26.4
Q ss_pred eecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003470 594 LISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 594 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
.+.|.|= |+.|-|++||+.+.+-..+|+||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455555 67999999999999999999998764
No 128
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=82 Score=29.69 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=26.8
Q ss_pred EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003470 593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626 (817)
Q Consensus 593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 626 (817)
-.+.|=|= |++|.|.+|++++.+-..+|++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 44555554 6899999999999999999999853
No 129
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=21.53 E-value=3.2e+02 Score=28.63 Aligned_cols=48 Identities=10% Similarity=0.299 Sum_probs=27.6
Q ss_pred eEEEEEeCCcccccccCCCCCccccccccccccccChHHHHHHHHHHHHHHHHHHHHh
Q 003470 23 EVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLEKKHDMLLGLL 80 (817)
Q Consensus 23 ~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (817)
...+|+|.+. |++--..+....+..+...++..+..+.+....+..+.
T Consensus 20 ~~s~v~L~nn----------GYe~vvIAI~p~VpEd~~lI~~Ik~m~t~AS~~Lf~AT 67 (262)
T PF08434_consen 20 STSLVKLNNN----------GYEDVVIAINPSVPEDEKLIDNIKDMFTEASQYLFNAT 67 (262)
T ss_pred cccEEEecCC----------CcccEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667889887 33333333344444455566666666666555555544
No 130
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.27 E-value=2.2e+02 Score=26.94 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=29.5
Q ss_pred ceEEEEEEEEEcCCC-ce----EEEEE---------EcCCCcEEEE-ecCeEEEcCCCEEEEEEE
Q 003470 732 KTQVVTRTVTNVAEE-ET----YSMSA---------RMQPAIAIEV-NPPAMTLKPGASRKFTVT 781 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~t----y~~~~---------~~~~~~~v~~-~~~~~tv~~g~~~~~~v~ 781 (817)
+...++++|+|+|+. .. |-+-- ...-|-.+.+ +...+.++||++++|+|.
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 445567799999997 22 11100 0112323333 235788999999998875
No 131
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=20.84 E-value=3.7e+02 Score=21.85 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEEcCCCceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEE
Q 003470 739 TVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLT 783 (817)
Q Consensus 739 tv~n~~~~~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~ 783 (817)
.+.++.. .+|++.+..+.-.... ...|+|.+|++.+++++++
T Consensus 41 ~~~~l~~-g~Y~l~v~~~g~~~~~--~~~v~v~~~~~~~~~i~L~ 82 (82)
T PF13620_consen 41 SFEGLPP-GTYTLRVSAPGYQPQT--QENVTVTAGQTTTVDITLE 82 (82)
T ss_dssp EEEEE-S-EEEEEEEEBTTEE-EE--EEEEEESSSSEEE--EEEE
T ss_pred EEEccCC-EeEEEEEEECCcceEE--EEEEEEeCCCEEEEEEEEC
Confidence 3444444 6677777655422222 2368999999999888774
Done!