Query 003471
Match_columns 817
No_of_seqs 285 out of 503
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 18:04:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003471.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1520-1524//hhsearch_pdb/003471hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cc1_A BH1870 protein, putativ 1.0 1 1 315.2 24.0 379 200-726 12-432 (433)
2 3a21_A Putative secreted alpha 1.0 1 1 265.8 26.2 361 199-729 11-389 (614)
3 1zy9_A Alpha-galactosidase; TM 1.0 1 1 258.1 24.4 355 158-645 162-530 (564)
4 1uas_A Alpha-galactosidase; TI 1.0 1 1 257.5 28.0 338 200-726 9-362 (362)
5 1szn_A Alpha-galactosidase; (b 1.0 1 1 252.2 26.0 353 200-727 12-414 (417)
6 4do4_A Alpha-N-acetylgalactosa 1.0 1 1 247.5 24.4 346 201-730 10-390 (400)
7 3a5v_A Alpha-galactosidase; be 1.0 1 1 245.5 28.6 359 200-728 9-395 (397)
8 3hg3_A Alpha-galactosidase A; 1.0 1 1 243.4 26.1 346 200-728 9-391 (404)
9 3lrk_A Alpha-galactosidase 1; 1.0 1 1 235.4 21.6 303 200-644 30-364 (479)
10 4fnq_A Alpha-galactosidase AGA 1.0 1 1 166.1 21.4 345 163-645 297-671 (729)
No 1
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=315.18 Aligned_cols=379 Identities=19% Similarity=0.257 Sum_probs=247.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH----HCCCCC
Q ss_conf 244655301012368977799999999978999---9199980686566689997333442100122000----000123
Q 003471 200 DKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQM----LCRLYR 272 (817)
Q Consensus 200 d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~----~~rL~~ 272 (817)
.+||||||++|++++||++|++.++.| +.|++ ++|++||||||...++..+- .+| ...+-+
T Consensus 12 pp~gwnsW~~~~~~i~e~~i~~~ad~~-~~gl~~~G~~~~~iDDgW~~~~~~~~~y-----------~~~~~~~~d~~G~ 79 (433)
T 3cc1_A 12 PPMGWNSWDCYGASVTEEEVLGNAEYM-ANHLKKYGWEYIVVDIQWYEPTANSSAY-----------NPFAPLCMDEYGR 79 (433)
T ss_dssp CCEEEESHHHHTTCCCHHHHHHHHHHH-HHHTGGGTCCEEEECSCTTCCCTTSTTC-----------CTTSCSCBCTTSC
T ss_pred CCEEEECHHHHCCCCCHHHHHHHHHHH-HHCCHHHCCEEEEECCCCCCCCCCCCCC-----------CCCCCCCCCCCCC
T ss_conf 987998856618757999999999999-8154631975999888757788866544-----------5455456278898
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 3236-322134458777999998871024688999999999875433107976679993210124776565211475689
Q 003471 273 LKEN-EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMA 351 (817)
Q Consensus 273 f~~n-~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~ 351 (817)
+.++ .|||+-.. ..||++
T Consensus 80 ~~~~~~kFP~~~~-------------------------------------------------------------~~Gl~~ 98 (433)
T 3cc1_A 80 LLPATNRFPSAKN-------------------------------------------------------------GAGFKP 98 (433)
T ss_dssp BCCCTTTCGGGTT-------------------------------------------------------------TTTTHH
T ss_pred EEECCCCCCCCCC-------------------------------------------------------------CCCHHH
T ss_conf 8678766877666-------------------------------------------------------------789899
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCC
Q ss_conf 999999854997689852000245-686578833688732652002347334443221-------012002796443956
Q 003471 352 LVSDLKEKYQTLDDVYVWHALCGA-WGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLA-------VDMIIEGGLGLVNPN 423 (817)
Q Consensus 352 ~V~~ik~~~~~ik~V~VWHAL~GY-WGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a-------~~~~~~~g~~~v~p~ 423 (817)
+++.||++ |+| +|+|..- |+ +..+.|+. .-|.+. -+..|++ +.+ ...++.+.+|
T Consensus 99 l~~~ih~~--Glk-~Giw~~p-~i~~~~v~~~s-~~~~~~-----------~~~~di~~~~~~~~~~~-~~~~lD~~~p- 160 (433)
T 3cc1_A 99 LSDAIHDL--GLK-FGIHIMR-GIPRQAVYENS-PVLGST-----------KTAREIAHTNSICPWNT-DMYGVDPTKE- 160 (433)
T ss_dssp HHHHHHHT--TCE-EEEEEES-SEEHHHHHHTC-BCTTSS-----------CBHHHHEETTCCBTTBT-TEEEECTTST-
T ss_pred HHHHHHHC--CCE-EEEEECC-CCCHHCCCCCC-CCCCCC-----------CEECCCCCCCCCCCCCC-CCEEECCCCH-
T ss_conf 99999986--984-5899578-77201037898-544665-----------31100146776667788-7343258988-
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHH---HCC
Q ss_conf 27789999999998809989997431101211035884689999999999999861038997287179995111---013
Q 003471 424 QAADLYEAMHSYLADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQCNDFF---FLA 500 (817)
Q Consensus 424 ~~~~FYdd~~~~Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~~~~l---~~~ 500 (817)
++++||+.++++|++|||||||+|.+.. ..+. .+ ..+..++|++||+++ +++|+.|||+.+... ...
T Consensus 161 ~~~~~~~~~~~~l~~~GvDyvK~D~~~~-~~~~-~~--~~~~~~~~~~aL~~~------gr~i~~slc~g~~~~~~~~~~ 230 (433)
T 3cc1_A 161 GAQSYYNSLFELYAQWGVDFVKVDDIAA-SRLY-DT--HLEEIKMIQRAIQAC------GRPMVLSLSPGPAPIKYAHHF 230 (433)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEESCSC-TTSS-CC--CHHHHHHHHHHHHHS------SSCCEEECCCSBSSEESCSSS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCC-CCCC-CC--CHHHHHHHHHHHHHC------CCCEEEEECCCCCCHHHHHHH
T ss_conf 9999999999999972998898678666-5678-53--279999999999862------998799933787774566666
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCC-----------------C--
Q ss_conf 44100110358877789999999752102357867-200120124787899742335533-----------------1--
Q 003471 501 TKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIH-CSYNSLWQGQFIQPDWDMFQSDHI-----------------C-- 560 (817)
Q Consensus 501 ~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~Hi~~-nAyNsl~~g~~~~PDwDMF~S~h~-----------------~-- 560 (817)
...+.+||+|||+++.++ ...|++. +++++.+.++..|||+|||+..|. .
T Consensus 231 ~~~~n~wR~s~D~~~~w~----------~~~~~~~~~~~~~~~~~~g~~nD~Dml~vg~~g~~~~~~~~~~~~~~lt~~E 300 (433)
T 3cc1_A 231 KTNANMWRITDDFWDDWS----------LLYQMFERCEVWEKHIGTGHWPDCGMLPLGHIGIRSVDGPGGDRWTRFTKDE 300 (433)
T ss_dssp CCTTGGGCCEECCCSCHH----------HHHHHHHHHHHHHHSCCCSCCCBCCCBCCSEECTTCSSSSSSSEECSSCHHH
T ss_pred HHHCCEEEECCCCCCCHH----------HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 520767986258644489----------9999999998888625997267707850467664454555655567899999
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEE
Q ss_conf 47889887742996686138999827755322089983211245677775322345678875338998325--6532899
Q 003471 561 AEFHAGSRAICGGPVYVSDKVGHHNFDLLRKLVLPDGTILRCQHYALPTRDCLFENPLFDAKTLLKIWNLN--KFAGVVG 638 (817)
Q Consensus 561 a~~HAaaRaisGGPVYiSD~pG~hd~~LLk~Lv~pdG~ilR~~~pg~ptrdcLf~Dp~~d~~~lLKIwn~n--~~~gviG 638 (817)
.++|.+++||+++|+|+||.+.+-+-+.+.-|..+ .|+....-|+..+- ++. ++ -+.||... .+.-+|+
T Consensus 301 ~rt~~alwai~~spL~ig~dl~~~~~~~~~lL~N~--eviavnqdg~~~~~-v~~----~~--~~~vw~~~l~~g~~~va 371 (433)
T 3cc1_A 301 QLTMMNLWAICHSPLMFGGELRDNDEWTLSLLTNE--GILSINQKSVLNRF-VYR----EE--DKVAWAANGRNGEAYVA 371 (433)
T ss_dssp HHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHCCH--HHHHHHHHCEEEEE-EEE----ET--TEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCH--HHEEECCCCCCCEE-EEE----CC--CCEEEEEECCCCCEEEE
T ss_conf 99999999985695586176132999999775596--65120577857524-574----59--81899999799989999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEECCCCEEEEEECCCC
Q ss_conf 8632789875334311248887664267530577420001233357799529999915873-886138880899842895
Q 003471 639 VFNCQGAGWYPEEHRCRAYPQCYKSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDN-LTVVKSNEQINITLQPSS 717 (817)
Q Consensus 639 vFN~qga~w~~~~~~~~~~~~~~~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~-l~~l~~~~~~~vtL~~~~ 717 (817)
+||.+... .+-++..+++. + .+.|.|+.--+++ +.....+..+.++|++.+
T Consensus 372 l~N~~~~~-----------------~~~~~~~~~lg-l----------~~~~~v~Dlw~~~~~g~~~~~~~~~~~v~~hg 423 (433)
T 3cc1_A 372 LFNLHDQQ-----------------KTLQFRLDMVG-I----------METVQLFNVWDRSFLQSLAPSESFQIELKPHQ 423 (433)
T ss_dssp EEECSSSC-----------------EEEEECGGGTT-C----------CSCEEEEETTTTEEEEEECTTCCEEEEECTTC
T ss_pred EEECCCCC-----------------EEEEEEHHHCC-C----------CCCEEEEECCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 99689997-----------------78998999939-9----------98618998878973442147745999999980
Q ss_pred EEEEEEEEE
Q ss_conf 499999321
Q 003471 718 FELFTISPV 726 (817)
Q Consensus 718 ~ei~t~~Pv 726 (817)
..+|.+.|.
T Consensus 424 ~~l~~l~~~ 432 (433)
T 3cc1_A 424 SMMLKLSPD 432 (433)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
T ss_conf 899999807
No 2
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=1.00 E-value=1 Score=265.77 Aligned_cols=361 Identities=16% Similarity=0.171 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 1244655301012368977799999999978999---9199980686566689997333442100122000000123323
Q 003471 199 VDKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKE 275 (817)
Q Consensus 199 ~d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~ 275 (817)
..+||||||++|++++||+.|++.++.|++.|++ ++||+||||||...++.. -++.+
T Consensus 11 ~~p~gwnsw~~~~~~~~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d~~--------------------g~~~~ 70 (614)
T 3a21_A 11 SAPMGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSA--------------------GNITV 70 (614)
T ss_dssp CCCEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBCTT--------------------CCBCC
T ss_pred CCCEEEECHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCCC--------------------CCEEE
T ss_conf 9964998254117657999999999999870778639789999787578986889--------------------99878
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 6-322134458777999998871024688999999999875433107976679993210124776565211475689999
Q 003471 276 N-EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVS 354 (817)
Q Consensus 276 n-~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~ 354 (817)
+ .||| +||+++++
T Consensus 71 ~~~~fP------------------------------------------------------------------~gl~~l~~ 84 (614)
T 3a21_A 71 DTAEWP------------------------------------------------------------------GGMSAITA 84 (614)
T ss_dssp CTTTST------------------------------------------------------------------TCHHHHHH
T ss_pred CCCCCC------------------------------------------------------------------CCHHHHHH
T ss_conf 801037------------------------------------------------------------------75899999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHH
Q ss_conf 99985499768985200024568657883368873265200234733444322101200279644395-62778999999
Q 003471 355 DLKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNP-NQAADLYEAMH 433 (817)
Q Consensus 355 ~ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p-~~~~~FYdd~~ 433 (817)
.||++ |+| +++|+.-.. ..-+ ..| |. + ++ ..| ..++.+|+..+
T Consensus 85 ~i~~~--Glk-~gi~~~~~~-----~~~~-~~~------p~---~----------~~--------~~pg~g~~~~~~~~~ 128 (614)
T 3a21_A 85 YIHSK--GLK-AGIYTDAGK-----DGCG-YYY------PT---G----------RP--------AAPGSGSEGHYDQDM 128 (614)
T ss_dssp HHHHT--TCE-EEEEEESSS-----SCHH-HHS------CS---S----------SC--------CCTTCSCTTCHHHHH
T ss_pred HHHHC--CCE-EEEEECCCC-----CCCC-CCC------CC---C----------CC--------CCCCHHHHHHHHHHH
T ss_conf 99977--986-589963877-----5433-337------77---7----------77--------887602577999999
Q ss_pred HHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH--HHHCCCCCEEEECCCC
Q ss_conf 99988099899974311012110358846899999999999998610389972871799951--1101344100110358
Q 003471 434 SYLADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQCND--FFFLATKQVSMGRVGD 511 (817)
Q Consensus 434 ~~Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~~~--~l~~~~~~a~~~R~SD 511 (817)
+++++|||||||+|.+...+. . ...++...++.+||..++.+ .+++|+.|||+... .+......+.+||+++
T Consensus 129 ~~~~~wGvd~lK~D~~~~~~~-~---~~~~~~y~~~~~al~~~~~~--~gr~i~~s~c~~g~~~~~~~~~~~~~~wR~~~ 202 (614)
T 3a21_A 129 LQFSTWGFDFVKVDWCGGDAE-G---LDAATTYKSISDAVGRAAAT--TGRPLTLSICNWGYQNPWNWAAGQAPLWRTST 202 (614)
T ss_dssp HHHHHHTCSEEEEECHHHHHH-T---CCHHHHHHHHHHHHHHHHHH--HSCCCEEEECCTTTTCGGGTCTTTCSEEECSS
T ss_pred HHHHHCCCCEEEECCCCCCCC-C---CCHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 999875986798656678654-4---10577899999999999985--39976998457766775564203276000340
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 877789999999752102357867200120124787899742335533-----147889887742996686138999827
Q 003471 512 DFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWQGQFIQPDWDMFQSDHI-----CAEFHAGSRAICGGPVYVSDKVGHHNF 586 (817)
Q Consensus 512 DF~p~~p~g~~~~~~~sh~~Hi~~nAyNsl~~g~~~~PDwDMF~S~h~-----~a~~HAaaRaisGGPVYiSD~pG~hd~ 586 (817)
|+++.+. +|-+ +....+++.. ...+..+++.|+|+||+...+. ....|.+++||+++|++++|.+.+++.
T Consensus 203 Di~~~~~--~~~~--~~~~~~~~~~-~~~~~~~pg~~nD~Dml~~g~~~~t~~e~~~~~alwai~~sPL~~g~Dl~~~~~ 277 (614)
T 3a21_A 203 DIIYYGN--QPSM--TSLLSNFDQT-LHPTAQHTGYYNDPDMLMVGMDGFTAAQNRTHMNLWAISGAPLLAGNDLTTMTS 277 (614)
T ss_dssp CSCCTTS--CCCH--HHHHHHHHHH-CCTTTCBTTBEEECCSCCTTCTTCCHHHHHHHHHHHHHHTCCEEECSCGGGCCH
T ss_pred CCCCCCC--CCCH--HHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCH
T ss_conf 2123345--5756--8999999986-468863899506887543279998999999999999987695275077230899
Q ss_pred HHHHHHCCCCCCEECCCCC--CCCCCCCCCCCCCCCCCCEEEEEECC---CCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 7553220899832112456--77775322345678875338998325---653289986327898753343112488876
Q 003471 587 DLLRKLVLPDGTILRCQHY--ALPTRDCLFENPLFDAKTLLKIWNLN---KFAGVVGVFNCQGAGWYPEEHRCRAYPQCY 661 (817)
Q Consensus 587 ~LLk~Lv~pdG~ilR~~~p--g~ptrdcLf~Dp~~d~~~lLKIwn~n---~~~gviGvFN~qga~w~~~~~~~~~~~~~~ 661 (817)
+.+.-|..++ ++....- |.+-+- +..++ + -+-||... .+.-+||+||.....
T Consensus 278 ~~~~il~n~e--~ia~~qd~~g~~~~~-v~~~~---~--~~~vw~~~l~~~g~~~v~~~N~~~~~--------------- 334 (614)
T 3a21_A 278 ETAGILKNPE--VIAVDQDSRGLQGVK-VAEDT---T--GLQAYGKVLSGTGNRAVVLLNRTSAA--------------- 334 (614)
T ss_dssp HHHHHHTCHH--HHHHHTCTTCCCCEE-EEEEE---T--TEEEEEEECSSSSCEEEEEEECSSSC---------------
T ss_pred HHHHHHCCHH--HHHHCCCCCCCCCEE-EEECC---C--CEEEEEEECCCCCCEEEEEEECCCCC---------------
T ss_conf 8987754967--764335545778679-88568---9--73999987478994999999889997---------------
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEECCCCEEEEEECCCCEEEEEEEEEEEC
Q ss_conf 64267530577420001233357799529999915873-886138880899842895499999321120
Q 003471 662 KSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDN-LTVVKSNEQINITLQPSSFELFTISPVHRL 729 (817)
Q Consensus 662 ~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~-l~~l~~~~~~~vtL~~~~~ei~t~~Pv~~~ 729 (817)
.+-++..+++. + + ...|.|+..-+++ +.. ....+.++|.+.+.-+|.+.|....
T Consensus 335 --~~~~~~l~~lg-~--------~-~~~~~v~dlw~~~~~~~--~~~~~~~~v~~h~~~~~~l~~~g~~ 389 (614)
T 3a21_A 335 --HDITVRWSDLG-L--------T-NASATVRDLWARQNVGT--SATGYTASVPAGGSVMLTVTGGTEA 389 (614)
T ss_dssp --EEEEEEHHHHT-B--------C-SSCEEEEETTTTEEEEE--ESSEEEEEECTTCEEEEEEESCCBC
T ss_pred --EEEEEEHHHHC-C--------C-CCCEEEEECCCCCCCCC--CCCEEEEEECCCEEEEEEECCCCCC
T ss_conf --88999889938-8--------8-88359998989985564--0656999989973999998377777
No 3
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=1.00 E-value=1 Score=258.14 Aligned_cols=355 Identities=14% Similarity=0.107 Sum_probs=220.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 23899986499789999999999997543766523467510124465530101236897779999999997899991999
Q 003471 158 SSCAYLHVGDNPYELMRDAFAAVRVYLGTFRLLEEKTVPKIVDKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLPPRFLI 237 (817)
Q Consensus 158 ~~~v~v~~G~dp~~li~eA~k~v~~~~~tf~~~~~k~~P~~~d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~~~~vi 237 (817)
..+++. .|++|.+++++..++.+++. ++...+. .++|||||+++++++||++|++.++.++ .+++++++
T Consensus 162 ~~~~~~-~g~~~~~v~~~y~~l~g~~~---~p~w~~~-----~P~gwnsW~~~~~~~te~~v~~~ad~~~--~~G~~~~~ 230 (564)
T 1zy9_A 162 EPLVVL-EDPNTPLLLEKYAELVGMEN---NARVPKH-----TPTGWCSWYHYFLDLTWEETLKNLKLAK--NFPFEVFQ 230 (564)
T ss_dssp CCEEEE-ECSCHHHHHHHHHHHHHHHT---TCCCCSS-----CCEEEESHHHHGGGCCHHHHHHHHHHGG--GTTCSEEE
T ss_pred CEEEEE-ECCCHHHHHHHHHHHHCCCC---CCCCCCC-----CCEEECCHHCCCCCCCHHHHHHHHHHHH--HCCCCEEE
T ss_conf 309999-58999999999999866268---9854568-----8357715204275799999999999998--45982999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 80686566689997333442100122000000123323-63221344587779999988710246889999999998754
Q 003471 238 IDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKE-NEKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRK 316 (817)
Q Consensus 238 IDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~-n~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~ 316 (817)
||||||+.. -++.. +.|||
T Consensus 231 IDdgW~~~~------------------------Gdw~~d~~kFP------------------------------------ 250 (564)
T 1zy9_A 231 IDDAYEKDI------------------------GDWLVTRGDFP------------------------------------ 250 (564)
T ss_dssp ECTTSEEET------------------------TEEEEECTTCC------------------------------------
T ss_pred ECCCCCCCC------------------------CCCCCCCCCCC------------------------------------
T ss_conf 886512225------------------------88553854589------------------------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 33107976679993210124776565211475689999999854997689852000245686578833688732652002
Q 003471 317 IKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSDLKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKL 396 (817)
Q Consensus 317 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~ 396 (817)
+ |+.++++||++ |+| +++|..-. .+.++. .-|+...-+...
T Consensus 251 ------------------------------~-lk~lvd~lh~~--Glk-~Giw~~P~----~v~~~S-~ly~~~pdw~v~ 291 (564)
T 1zy9_A 251 ------------------------------S-VEEMAKVIAEN--GFI-PGIWTAPF----SVSETS-DVFNEHPDWVVK 291 (564)
T ss_dssp ------------------------------C-HHHHHHHHHHT--TCE-EEEEECTT----EEETTC-HHHHHCGGGBCE
T ss_pred ------------------------------C-HHHHHHHHHHC--CCE-EEEEECCC----CCCCCC-HHHHHCCCEEEE
T ss_conf ------------------------------9-89999999987--998-99996777----568898-668868886996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34733444322101200279644395627789999999998809989997431101211035884689999999999999
Q 003471 397 AAGLQNTMNDLAVDMIIEGGLGLVNPNQAADLYEAMHSYLADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKS 476 (817)
Q Consensus 397 spg~~~~~~d~a~~~~~~~g~~~v~p~~~~~FYdd~~~~Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S 476 (817)
.+|...... -.|+.- ...+.+.+| ++++||.+.++.++++||||||+|.+......+..++ .+..+++|+.+|++
T Consensus 292 ~~G~~~~~~-~~W~~~-~~~lD~t~P-~a~~~~~~~~~~~~~~GVD~iK~D~~~~~~~~g~~~~-~~~~~~~y~~~l~~- 366 (564)
T 1zy9_A 292 ENGEPKMAY-RNWNKK-IYALDLSKD-EVLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGERKK-NITPIQAFRKGIET- 366 (564)
T ss_dssp ETTEECEEE-EETTEE-EEEBCTTCH-HHHHHHHHHHHHHHHTTCCEEEECCGGGGGCSSBCSS-SCCHHHHHHHHHHH-
T ss_pred CCCEEEEEE-CCCCCC-EEECCCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHHH-
T ss_conf 599522200-125786-341289987-7999999999999864998899847887666654346-35499999999999-
Q ss_pred HHHHCC-CCCEEEECCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCC-
Q ss_conf 861038-9972871799951110134410011035887778999999975210235786720012012478-7899742-
Q 003471 477 LQKNFA-GSGLIASMEQCNDFFFLATKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWQGQF-IQPDWDM- 553 (817)
Q Consensus 477 ~~r~F~-g~~iI~CMs~~~~~l~~~~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~Hi~~nAyNsl~~g~~-~~PDwDM- 553 (817)
+.+.|+ ..-+.+|+++.. . +...+.+||+|+|+.+.+.+ +.+++......+.+.|+++.+++... .|+|.||
T Consensus 367 l~~~~pr~i~i~~C~~g~~---~-s~~~~n~~Ris~Di~~~W~s-~~~~~~~p~~~~~~~n~~~~~~~~~~~~~nDPDml 441 (564)
T 1zy9_A 367 IRKAVGEDSFILGCGSPLL---P-AVGCVDGMRIGPDTAPFWGE-HIEDNGAPAARWALRNAITRYFMHDRFWLNDPDCL 441 (564)
T ss_dssp HHHHHCTTSEEEECSCBSG---G-GTTTCSEEECSSCCCSSCCT-TSCSSSSSCHHHHHHHHHHTGGGBTTTBEEECCCB
T ss_pred HHHHCCCCEEEEECCCCCC---C-CCCCCCEEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 9965799729980488664---4-21503468984884666666-33212347899999999988865268764079875
Q ss_pred -CCC--CCC---CHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -335--533---14788988774299668613899---982775532208998321124567777532234567887533
Q 003471 554 -FQS--DHI---CAEFHAGSRAICGGPVYVSDKVG---HHNFDLLRKLVLPDGTILRCQHYALPTRDCLFENPLFDAKTL 624 (817)
Q Consensus 554 -F~S--~h~---~a~~HAaaRaisGGPVYiSD~pG---~hd~~LLk~Lv~pdG~ilR~~~pg~ptrdcLf~Dp~~d~~~l 624 (817)
+.+ .|. ..++|++++|++|+|+|+||.+. .+++++|++++..+|...|. .++..++. +
T Consensus 442 ~vg~~~~~lT~~E~r~h~alwAi~g~PLiigddl~~l~~~~l~lL~evIavng~~~~~------------~~~~~~~~-v 508 (564)
T 1zy9_A 442 ILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLGGRPRV------------QNIMSEDL-R 508 (564)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHHHHHTTCSSEEEE------------TTTTCSSS-E
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCEE------------ECCCCCCE-E
T ss_conf 7568889999999999999999970872663683659999999999999972983033------------05898724-8
Q ss_pred EEEEECCCCC-EEEEEEECCCC
Q ss_conf 8998325653-28998632789
Q 003471 625 LKIWNLNKFA-GVVGVFNCQGA 645 (817)
Q Consensus 625 LKIwn~n~~~-gviGvFN~qga 645 (817)
..+|.-.... -+|++||....
T Consensus 509 w~v~a~~~~~g~aValfN~~~~ 530 (564)
T 1zy9_A 509 YEIVSSGTLSGNVKIVVDLNSR 530 (564)
T ss_dssp EEEEEEEETTEEEEEEEETTTT
T ss_pred EEEECCCCCCCEEEEEEECCCC
T ss_conf 9984677889889999978999
No 4
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=1.00 E-value=1 Score=257.47 Aligned_cols=338 Identities=15% Similarity=0.175 Sum_probs=220.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 244655301012368977799999999978999---91999806865666899973334421001220000001233236
Q 003471 200 DKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKEN 276 (817)
Q Consensus 200 d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~n 276 (817)
.+||||||++|++++||+.|++.++.+++.|++ ++|++||||||...|+.. -++.++
T Consensus 9 pp~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~--------------------G~~~~~ 68 (362)
T 1uas_A 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQ--------------------GNFVPN 68 (362)
T ss_dssp CCEEEESHHHHTTCCCHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTT--------------------SCCCBC
T ss_pred CCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCHHCCCCEEEECCCCCCCCCCCC--------------------CCEEEC
T ss_conf 987998889877788999999999999976962219759998787577887899--------------------986688
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -3221344587779999988710246889999999998754331079766799932101247765652114756899999
Q 003471 277 -EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSD 355 (817)
Q Consensus 277 -~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ 355 (817)
.||| +||+++++.
T Consensus 69 ~~~FP------------------------------------------------------------------~Gl~~l~~~ 82 (362)
T 1uas_A 69 RQTFP------------------------------------------------------------------SGIKALADY 82 (362)
T ss_dssp TTTCT------------------------------------------------------------------TCHHHHHHH
T ss_pred HHCCC------------------------------------------------------------------CCHHHHHHH
T ss_conf 11068------------------------------------------------------------------668999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99854997689852000245686578833688732652002347334443221012002796443956277899999999
Q 003471 356 LKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQAADLYEAMHSY 435 (817)
Q Consensus 356 ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~~~FYdd~~~~ 435 (817)
||++ |+| +++|+.-...|-+ ...| +.+.+|+..++.
T Consensus 83 ih~~--Glk-~Giw~~~~~~~~~----------------~~~p-------------------------g~~~~~~~~~~~ 118 (362)
T 1uas_A 83 VHAK--GLK-LGIYSDAGSQTCS----------------NKMP-------------------------GSLDHEEQDVKT 118 (362)
T ss_dssp HHHT--TCE-EEEEEESSSBCTT----------------SSSB-------------------------CCTTCHHHHHHH
T ss_pred HHHC--CCE-EEEEEECCCCCCC----------------CCCC-------------------------CCHHHHHHHHHH
T ss_conf 9977--987-6899507876145----------------8998-------------------------700479999999
Q ss_pred HHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCC-CHHHHCCCCCEEEECCCCC
Q ss_conf 98809989997431101211035884689999999999999861038997287--17999-5111013441001103588
Q 003471 436 LADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIA--SMEQC-NDFFFLATKQVSMGRVGDD 512 (817)
Q Consensus 436 Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~--CMs~~-~~~l~~~~~~a~~~R~SDD 512 (817)
+++|||||||+|.+..-+ . .. ...| .++..++.+.++ +++. |++.. .+..+.+...+. ||+|+|
T Consensus 119 ~~~wGvdyvK~D~~~~~~-----~-~~---~~~y-~~~~~al~~~~~--~i~~~~c~~g~~~p~~w~~~~~n~-~R~~~D 185 (362)
T 1uas_A 119 FASWGVDYLKYDNCNDAG-----R-SV---MERY-TRMSNAMKTYGK--NIFFSLCEWGKENPATWAGRMGNS-WRTTGD 185 (362)
T ss_dssp HHHHTCCEEEEECCCCTT-----C-CH---HHHH-HHHHHHHHHHCT--TSEEEEESTTTTCGGGTGGGTCSE-EECSSC
T ss_pred HHHCCCCEEEECCCCCCC-----C-CH---HHHH-HHHHHHHHHHCC--CCEEEECCCCCCCHHHHHHHHEEE-EEECCC
T ss_conf 997699889987637899-----7-88---9999-999999986399--948995678888747778523008-873488
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf 7778999999975210235786720012012478789974233553-----31478898877429966861389998277
Q 003471 513 FWFQDPNGDPMGAFWLQGVHMIHCSYNSLWQGQFIQPDWDMFQSDH-----ICAEFHAGSRAICGGPVYVSDKVGHHNFD 587 (817)
Q Consensus 513 F~p~~p~g~~~~~~~sh~~Hi~~nAyNsl~~g~~~~PDwDMF~S~h-----~~a~~HAaaRaisGGPVYiSD~pG~hd~~ 587 (817)
++|.++ .. .-.+-.+++.+-+.+++.|+|+||++..+ .....|.+++|++++|+++++.+.+.+-+
T Consensus 186 ~~~~w~--------~~-~~~~~~~~~~~~~~~pg~~~D~Dml~vg~~~~t~~e~~~~~al~~i~~spL~~~~Dl~~~~~~ 256 (362)
T 1uas_A 186 IADNWG--------SM-TSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQ 256 (362)
T ss_dssp CCSSHH--------HH-HHHHHHHHTTGGGCBTTBEEECCCCCTTSSSSCHHHHHHHHHHHHHTTCCEEECSCTTSCCHH
T ss_pred CCCCCH--------HH-HHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHCCHH
T ss_conf 776716--------69-999999987787338984069505125899889899999999999847964731770028999
Q ss_pred HHHHHCCCCCCEECCC--CCCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5532208998321124--5677775322345678875338998325--65328998632789875334311248887664
Q 003471 588 LLRKLVLPDGTILRCQ--HYALPTRDCLFENPLFDAKTLLKIWNLN--KFAGVVGVFNCQGAGWYPEEHRCRAYPQCYKS 663 (817)
Q Consensus 588 LLk~Lv~pdG~ilR~~--~pg~ptrdcLf~Dp~~d~~~lLKIwn~n--~~~gviGvFN~qga~w~~~~~~~~~~~~~~~~ 663 (817)
.+.-|..++ ++... ..|.+.+- +.. ++. .-||... ...-.||+||.....
T Consensus 257 ~~~~l~n~e--via~~qd~lg~~~~~-v~~----~~~--~~v~a~~~~~~~~~v~~~N~~~~~----------------- 310 (362)
T 1uas_A 257 TKNILSNSE--VIAVNQDSLGVQGKK-VQS----DNG--LEVWAGPLSNNRKAVVLWNRQSYQ----------------- 310 (362)
T ss_dssp HHHHHTCHH--HHHHHTCTTCCCCEE-EEE----ETT--EEEEEEECSTTCEEEEEEECSSSC-----------------
T ss_pred HHHHHCCHH--HHHHCCCCCCCCCEE-EEE----CCC--EEEEEEECCCCCEEEEEEECCCCC-----------------
T ss_conf 997643877--752046655756269-995----698--079999968998999999479987-----------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 267530577420001233357799529999915873886138880899842895499999321
Q 003471 664 ISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDNLTVVKSNEQINITLQPSSFELFTISPV 726 (817)
Q Consensus 664 vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~l~~l~~~~~~~vtL~~~~~ei~t~~Pv 726 (817)
.+-.+...++. + +....|.|+.--+++-.- ....+.++|.+.+.-++.+.|+
T Consensus 311 ~~~~~~l~~lg-l--------~~~~~~~v~dlw~~~~~~--~~~~l~~~l~~~g~~~~~l~~~ 362 (362)
T 1uas_A 311 ATITAHWSNIG-L--------AGSVAVTARDLWAHSSFA--AQGQISASVAPHDCKMYVLTPN 362 (362)
T ss_dssp EEEEEEGGGTT-C--------CTTCEEEEEETTTTEEEE--EESEEEEEECTTCEEEEEEEEC
T ss_pred EEEEEEHHHCC-C--------CCCCCEEEEECCCCCCCC--CCCEEEEEECCCEEEEEEEEEC
T ss_conf 78998899929-9--------989837999876998666--6663999999982899999839
No 5
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=1.00 E-value=1 Score=252.20 Aligned_cols=353 Identities=14% Similarity=0.152 Sum_probs=225.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 244655301012368977799999999978999---91999806865666899973334421001220000001233236
Q 003471 200 DKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKEN 276 (817)
Q Consensus 200 d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~n 276 (817)
.+||||||++|++++||+.|++.++.+++.|++ ++|++||||||...++. +-++.++
T Consensus 12 ppmgwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~--------------------~G~~~~~ 71 (417)
T 1szn_A 12 PSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRV--------------------DGHIAPN 71 (417)
T ss_dssp CCEEEESHHHHTTCCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCB--------------------TTBCCBC
T ss_pred CCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCC--------------------CCCEEEC
T ss_conf 97899826725857899999999999987683552987899878746799888--------------------8987777
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -3221344587779999988710246889999999998754331079766799932101247765652114756899999
Q 003471 277 -EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSD 355 (817)
Q Consensus 277 -~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ 355 (817)
.||| +||+++++.
T Consensus 72 ~~kFP------------------------------------------------------------------~Gl~~l~~~ 85 (417)
T 1szn_A 72 ATRFP------------------------------------------------------------------DGIDGLAKK 85 (417)
T ss_dssp TTTCT------------------------------------------------------------------THHHHHHHH
T ss_pred CCCCC------------------------------------------------------------------CCHHHHHHH
T ss_conf 32377------------------------------------------------------------------579999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99854997689852000245686578833688732652002347334443221012002796443956277899999999
Q 003471 356 LKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQAADLYEAMHSY 435 (817)
Q Consensus 356 ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~~~FYdd~~~~ 435 (817)
||++ |+| +++|+.-- |+- +-..|| .+.+++..++.
T Consensus 86 i~~~--Glk-~Giw~~~g-------~~~----------c~~~Pg-------------------------s~~~~~~d~~~ 120 (417)
T 1szn_A 86 VHAL--GLK-LGIYSTAG-------TAT----------CAGYPA-------------------------SLGYEDVDAAD 120 (417)
T ss_dssp HHHT--TCE-EEEEEESS-------SBC----------TTSCBC-------------------------CTTCHHHHHHH
T ss_pred HHHC--CCE-EEEEECCC-------CCH----------HCCCCC-------------------------HHHHHHHHHHH
T ss_conf 9976--998-79991799-------743----------036942-------------------------57589999999
Q ss_pred HHHCCCCEEEECCCCCHHHHCCC-----------------------------CCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 98809989997431101211035-----------------------------8846899999999999998610389972
Q 003471 436 LADVGISGVKVDVIHTLEYVSED-----------------------------HGGRVQLAKAYYDGLNKSLQKNFAGSGL 486 (817)
Q Consensus 436 Las~GVD~VKVD~Q~~l~~l~~~-----------------------------~g~rv~la~ay~~Al~~S~~r~F~g~~i 486 (817)
+++|||||||+|.+.....+.+. +....+.....+.+|+.++.+. +++|
T Consensus 121 ~~~wGvdylK~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~~~~p~~~~~~~~~~~~~~~~~Y~~m~~aL~~~--~~~i 198 (417)
T 1szn_A 121 FADWGVDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNALAKQ--SHEI 198 (417)
T ss_dssp HHHTTCCEEEEECCCCCGGGSCSSBCCCTTTSCCBGGGBCCTTTCTTBCCTTCCGGGSHHHHHHHHHHHHHHTS--SSCC
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--CCCE
T ss_conf 99759999998998885331123444555444444444433334544465321233046899999999999986--8998
Q ss_pred EEECCCCC---HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCC----
Q ss_conf 87179995---1110134410011035887778999999975210235786-720012012478789974233553----
Q 003471 487 IASMEQCN---DFFFLATKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMI-HCSYNSLWQGQFIQPDWDMFQSDH---- 558 (817)
Q Consensus 487 I~CMs~~~---~~l~~~~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~Hi~-~nAyNsl~~g~~~~PDwDMF~S~h---- 558 (817)
+.++|+.. ...+. .....+||+|+|+++.++ .-.+|+ .+++...+.+...|+|+||+...+
T Consensus 199 ~~~~C~~G~~~~~~w~-~~~~n~wR~s~D~~d~w~----------~~~~i~~~~~~~~~~~~~g~~~D~DmL~vg~~~~t 267 (417)
T 1szn_A 199 VLSMCIWGQADVFSWG-NSTGISWRMSDDISPNWG----------SVTRILNLNSFKLNSVDFWGHNDADMLEVGNGNLT 267 (417)
T ss_dssp EEEECCTTGGGHHHHG-GGTCSEEECSSCCCSSHH----------HHHHHHHHHHTCGGGCBTTBEEECCSCCTTCTTCC
T ss_pred EEEECCCCCCCCHHHH-HHCCCCEEECCCCCCCHH----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9996777777615567-640430221578552577----------89999998755331046853058863456999989
Q ss_pred -CCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCEECCCC---CCCCCCC---CCCCCCCCCCCCEEEEEECC
Q ss_conf -3147889887742996686138999827755322089983211245---6777753---22345678875338998325
Q 003471 559 -ICAEFHAGSRAICGGPVYVSDKVGHHNFDLLRKLVLPDGTILRCQH---YALPTRD---CLFENPLFDAKTLLKIWNLN 631 (817)
Q Consensus 559 -~~a~~HAaaRaisGGPVYiSD~pG~hd~~LLk~Lv~pdG~ilR~~~---pg~ptrd---cLf~Dp~~d~~~lLKIwn~n 631 (817)
...+.|.+.+|++|+|+++++.+.+-+-+-+.-|..++ ++.... .|++.+- -.-.|...+...-+.||...
T Consensus 268 ~~E~r~~~alwa~~gspL~ig~dl~~l~~~~~~~L~N~e--viav~qd~~lg~~~~~v~w~~~p~~~~~~~~~~~vw~~~ 345 (417)
T 1szn_A 268 AAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKH--LLAFNQDSVYGQPATPYKWGINPDWTFNVTYPAEFWAGP 345 (417)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCGGGCCHHHHHHHTCHH--HHHHHTCSSCCSCCEEEECSSSCTTCCCSSSCCCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCHH--HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEE
T ss_conf 899999999999848966863771429999998863768--885346522586448841255665444778871078888
Q ss_pred --CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCEE
Q ss_conf --653289986327898753343112488876642675305774200012333577995299999158738861388808
Q 003471 632 --KFAGVVGVFNCQGAGWYPEEHRCRAYPQCYKSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDNLTVVKSNEQI 709 (817)
Q Consensus 632 --~~~gviGvFN~qga~w~~~~~~~~~~~~~~~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~l~~l~~~~~~ 709 (817)
.+ -+|++||.... +.+-.+...+++++. .+.|.|+.--+++-.-. ...+
T Consensus 346 l~~g-~~v~l~N~~~~-----------------~~~~~~~~~~l~gl~---------~~~~~v~DlW~~~~~g~--~~~~ 396 (417)
T 1szn_A 346 SSKG-HLVLMVNTLDI-----------------TATKEAKWNEIPGLS---------AGHYEVRDVWSDKDLGC--LSSY 396 (417)
T ss_dssp CTTC-EEEEEECCSSS-----------------CEEEEECGGGSTTCC---------SSEEEEEETTTTEEEEE--ESSE
T ss_pred CCCC-CEEEEEECCCC-----------------CEEEEECHHHCCCCC---------CCCEEEEECCCCCCCCC--CCEE
T ss_conf 5898-19999977998-----------------556786889908988---------88659998769975664--6628
Q ss_pred EEEECCCCEEEEEEEEEE
Q ss_conf 998428954999993211
Q 003471 710 NITLQPSSFELFTISPVH 727 (817)
Q Consensus 710 ~vtL~~~~~ei~t~~Pv~ 727 (817)
.++|++.+.-+|.+.|.-
T Consensus 397 ~~~v~~h~~~l~~l~~~~ 414 (417)
T 1szn_A 397 KAAVAAHDTAVILVGKKC 414 (417)
T ss_dssp EEEECTTCEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEECCC
T ss_conf 999999808999997155
No 6
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=1.00 E-value=1 Score=247.54 Aligned_cols=346 Identities=15% Similarity=0.185 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCCCCC----------HHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 446553010123689----------77799999999978999---91999806865666899973334421001220000
Q 003471 201 KFGWCSWDAFYLTVE----------PVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQML 267 (817)
Q Consensus 201 ~~GWcTW~af~~~vt----------e~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~ 267 (817)
+|||||||+|+++++ |+.|+++++.|++.|+. ++|++||||||.. |+..
T Consensus 10 pmGWnSW~~~~~~i~~~~~~~~~~se~~i~~~ad~~~~~gl~~~Gy~yv~iDdgW~~~-rd~~----------------- 71 (400)
T 4do4_A 10 PMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGG-RDAS----------------- 71 (400)
T ss_dssp CEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHSSHHHHTCCEEECCSSCEEE-ECTT-----------------
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCC-CCCC-----------------
T ss_conf 9731066753646673213333341999999999999776464197699987886668-7889-----------------
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001233236-3221344587779999988710246889999999998754331079766799932101247765652114
Q 003471 268 CRLYRLKEN-EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQER 346 (817)
Q Consensus 268 ~rL~~f~~n-~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 346 (817)
-++.++ .|||
T Consensus 72 ---G~~~~d~~rFP------------------------------------------------------------------ 82 (400)
T 4do4_A 72 ---GRLMPDPKRFP------------------------------------------------------------------ 82 (400)
T ss_dssp ---CCEEECTTTST------------------------------------------------------------------
T ss_pred ---CCEEECCCCCC------------------------------------------------------------------
T ss_conf ---98857742377------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 75689999999854997689852000245686578833688732652002347334443221012002796443956277
Q 003471 347 GGLMALVSDLKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQAA 426 (817)
Q Consensus 347 ~GLk~~V~~ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~~ 426 (817)
+||+.+++.||++ |+| .|+|..-..+|-+-. |....
T Consensus 83 ~G~k~ladyih~~--Glk-~Giy~~~~~~~c~g~-----------------------------------------~~~~~ 118 (400)
T 4do4_A 83 HGIPFLADYVHSL--GLK-LGIYADMGNFTCMGY-----------------------------------------PGTTL 118 (400)
T ss_dssp TCHHHHHHHHHHT--TCE-EEEEEEBSSBCTTSC-----------------------------------------BCBCG
T ss_pred CCCHHHHHHHHHC--CCE-EEEECCCCCCCCCCC-----------------------------------------CCHHH
T ss_conf 6548999999877--955-889567877655897-----------------------------------------83057
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH--------HH
Q ss_conf 8999999999880998999743110121103588468999999999999986103899728717999511--------10
Q 003471 427 DLYEAMHSYLADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQCNDF--------FF 498 (817)
Q Consensus 427 ~FYdd~~~~Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~~~~--------l~ 498 (817)
.+++...+.+++|||||||+|.+.. +. .....++.++...+.++ ++.+..+.+..... ..
T Consensus 119 ~~~~~da~~~a~wGvdylK~D~~~~---------~~-~~~~~~~~~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~~ 186 (400)
T 4do4_A 119 DKVVQDAQTFAEWKVDMLKLDGCFS---------TP-EERAQGYPKMAAALNAT--GRPIAFSCSWPAYEGGLPPRVQYS 186 (400)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECTTC---------CH-HHHHHHHHHHHHHHHHT--CSCCEEEECGGGGTTSSTTTCCHH
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCC---------CH-HHHHHHHHHHHHHHHHH--CCCCEECCCCCCCCCCCCCCCCHH
T ss_conf 6999888778875885074356768---------72-66654415789999982--866100023341124556654211
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHH
Q ss_conf 134410011035887778999999975210235---7867200120124787899742335533-----14788988774
Q 003471 499 LATKQVSMGRVGDDFWFQDPNGDPMGAFWLQGV---HMIHCSYNSLWQGQFIQPDWDMFQSDHI-----CAEFHAGSRAI 570 (817)
Q Consensus 499 ~~~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~---Hi~~nAyNsl~~g~~~~PDwDMF~S~h~-----~a~~HAaaRai 570 (817)
.....+.+||+++|+++.++ ..... ....+.+...+.++..|+|.||++..+. -.+.|.+++|+
T Consensus 187 ~~~~~~~~~R~~~Di~~~w~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~l~~~~~~~t~~e~~t~~slwa~ 258 (400)
T 4do4_A 187 LLADICNLWRNYDDIQDSWW--------SVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTV 258 (400)
T ss_dssp HHHHHCSEEECSCCCCSSHH--------HHHHHHHHHHHTHHHHGGGCBTTBEEECCCCCTTSSSCCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 11441233221376367632--------2121788999986776650478877787544135789988999999999999
Q ss_pred CCCCEEEECCCCCCCHHHHHHHCCCCCCEECCCC--CCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 2996686138999827755322089983211245--677775322345678875338998325--653289986327898
Q 003471 571 CGGPVYVSDKVGHHNFDLLRKLVLPDGTILRCQH--YALPTRDCLFENPLFDAKTLLKIWNLN--KFAGVVGVFNCQGAG 646 (817)
Q Consensus 571 sGGPVYiSD~pG~hd~~LLk~Lv~pdG~ilR~~~--pg~ptrdcLf~Dp~~d~~~lLKIwn~n--~~~gviGvFN~qga~ 646 (817)
.++|+++++.+-+.+-+-+.-|..++ ++.... .|.+.+ .++. + ....-||... .+.-+|++||..+..
T Consensus 259 ~~spL~~g~Dl~~~~~~~~~lL~N~e--via~~qd~~g~~~~-~v~~----~-~~~~~vw~~~~~~g~~~va~~N~~~~~ 330 (400)
T 4do4_A 259 LAAPLLMSTDLRTISAQNMDILQNPL--MIKINQDPLGIQGR-RIHK----E-KSLIEVYMRPLSNKASALVFFSCRTDM 330 (400)
T ss_dssp TTCCEEECSCTTTCCHHHHHHHTCHH--HHHHHTCTTCCCCE-EEEE----C-TTSEEEEEEECGGGCEEEEEEECCSSS
T ss_pred HCCCEEECCCCCCCCHHHHHHHHCHH--HHHHCCCCCCCCCE-EEEC----C-CCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 72877852773328988999852946--55415422253765-8434----8-984289999968998999999878997
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 75334311248887664267530577420001233357799529999915873-88613888089984289549999932
Q 003471 647 WYPEEHRCRAYPQCYKSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDN-LTVVKSNEQINITLQPSSFELFTISP 725 (817)
Q Consensus 647 w~~~~~~~~~~~~~~~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~-l~~l~~~~~~~vtL~~~~~ei~t~~P 725 (817)
+.+-++..+++. + .....|.|+..-+++ +........+.++|++.+..+|.++|
T Consensus 331 ----------------~~~~~~~l~~lG-l--------~~~~~y~vrDlw~~~~~g~~~~~~~~~~~v~phg~~l~~ltP 385 (400)
T 4do4_A 331 ----------------PYRYHSSLGQLN-F--------TGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLYP 385 (400)
T ss_dssp ----------------CEEEEEEGGGGT-C--------CTTCEEEEEETTTCCEEEEECTTCEEEEEECTTCEEEEEEEE
T ss_pred ----------------CEEEEEEHHHCC-C--------CCCCEEEEEECCCCCEECCCCCCCEEEEEECCCEEEEEEEEE
T ss_conf ----------------379998989969-9--------989848999886896322204776699998998089999994
Q ss_pred EEECC
Q ss_conf 11207
Q 003471 726 VHRLN 730 (817)
Q Consensus 726 v~~~~ 730 (817)
|+++.
T Consensus 386 vk~~~ 390 (400)
T 4do4_A 386 IKNLE 390 (400)
T ss_dssp EC---
T ss_pred CCCCC
T ss_conf 57666
No 7
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=1.00 E-value=1 Score=245.54 Aligned_cols=359 Identities=17% Similarity=0.189 Sum_probs=230.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 244655301012368977799999999978999---91999806865666899973334421001220000001233236
Q 003471 200 DKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKEN 276 (817)
Q Consensus 200 d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~n 276 (817)
.+||||||++|++++||+.|++.++.+++.|++ ++|++||||||...|+.. -++.++
T Consensus 9 pp~gwnsW~~~~~~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~r~~~--------------------G~~~~~ 68 (397)
T 3a5v_A 9 PQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESS--------------------KTLLAD 68 (397)
T ss_dssp CCEEEESHHHHGGGCCHHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCTT--------------------SCCCBC
T ss_pred CCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC--------------------CCEEEC
T ss_conf 988998879858688999999999999976982149569999888677887888--------------------986778
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -3221344587779999988710246889999999998754331079766799932101247765652114756899999
Q 003471 277 -EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSD 355 (817)
Q Consensus 277 -~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ 355 (817)
.||| +||+++++.
T Consensus 69 ~~kFP------------------------------------------------------------------~Gl~~l~~~ 82 (397)
T 3a5v_A 69 PTKFP------------------------------------------------------------------RGIKPLVDD 82 (397)
T ss_dssp TTTCT------------------------------------------------------------------TCHHHHHHH
T ss_pred HHCCC------------------------------------------------------------------CCHHHHHHH
T ss_conf 00178------------------------------------------------------------------579999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99854997689852000245686578833688732652002347334443221012002796443956277899999999
Q 003471 356 LKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQAADLYEAMHSY 435 (817)
Q Consensus 356 ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~~~FYdd~~~~ 435 (817)
||++ |+| +++|+. |+. + + +...| .+..|++..++.
T Consensus 83 i~~~--Glk-~Giw~~---------pg~---~-t----c~~~p-------------------------g~~~~~~~~~~~ 117 (397)
T 3a5v_A 83 IHNL--GLK-AGIYSS---------AGT---L-T----CGGHI-------------------------ASLGYEDIDAKT 117 (397)
T ss_dssp HHHT--TCE-EEEEEE---------SSS---B-C----TTSCB-------------------------CCTTCHHHHHHH
T ss_pred HHHC--CCE-EEEEEC---------CCC---C-C----CCCCH-------------------------HHHHHHHHHHHH
T ss_conf 9986--997-799932---------898---7-6----68877-------------------------788888999999
Q ss_pred HHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHH--HHCCCCCEEEECCCCC
Q ss_conf 9880998999743110121103588468999999999999986103899728717999-511--1013441001103588
Q 003471 436 LADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQC-NDF--FFLATKQVSMGRVGDD 512 (817)
Q Consensus 436 Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~-~~~--l~~~~~~a~~~R~SDD 512 (817)
+++|||||||+|.+...+.. + ...+..+.+++|..++.+.+ ++|+.++|.. .+. .+. ...+.+||+|+|
T Consensus 118 ~~~wGvdyvK~D~~~~~~~~----~-~~~~~~~~y~~m~~~L~~~~--~~i~~~~c~~G~~~~~~w~-~~~~n~wR~s~D 189 (397)
T 3a5v_A 118 WAKWGIDYLKYDNCYNQGQS----G-TPKLSYDRYKAMGNALNKTG--RPMLYSLCNWGEDGPWNFA-STISNSWRISGD 189 (397)
T ss_dssp HHHHTCCEEEEECTTCTTCC----S-SHHHHHHHHHHHHHHHHHTC--SCCEEEECSTTTTCHHHHS-TTTCSEEECSSC
T ss_pred HHHCCCCEEEECCCCCCCCC----C-CCCHHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHH-HHCCCEEEECCC
T ss_conf 98759988988887677767----8-83025899999999999668--9958996567777605677-410747997677
Q ss_pred CCCCCCCCCC---C---CC-CC----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CC--HHHHHHHHHHCCCCEE
Q ss_conf 7778999999---9---75-21----0235786720012012478789974233553---31--4788988774299668
Q 003471 513 FWFQDPNGDP---M---GA-FW----LQGVHMIHCSYNSLWQGQFIQPDWDMFQSDH---IC--AEFHAGSRAICGGPVY 576 (817)
Q Consensus 513 F~p~~p~g~~---~---~~-~~----sh~~Hi~~nAyNsl~~g~~~~PDwDMF~S~h---~~--a~~HAaaRaisGGPVY 576 (817)
++|.+..-+. + +. .. +-.-.+..++..+-+.++..|+|+||+...+ .. .+.|.+.+||+++|++
T Consensus 190 i~~~w~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pg~~nD~Dml~vg~~~lt~~E~~~~~alwai~~sPL~ 269 (397)
T 3a5v_A 190 VYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQEEYRVHYTIWAALKSPLI 269 (397)
T ss_dssp BCSCSSCCCTTSCCCSSCCSCCCSCBCHHHHHHHHHHHGGGCBTTBEEECCCBCTTSSSSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 67764444444432333334555321299999973145763488746785220038999899999999999998659617
Q ss_pred EECCCCCCCHHHHHHHCCCCCCEECCCC--CCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCCCCCCCC
Q ss_conf 6138999827755322089983211245--677775322345678875338998325--653289986327898753343
Q 003471 577 VSDKVGHHNFDLLRKLVLPDGTILRCQH--YALPTRDCLFENPLFDAKTLLKIWNLN--KFAGVVGVFNCQGAGWYPEEH 652 (817)
Q Consensus 577 iSD~pG~hd~~LLk~Lv~pdG~ilR~~~--pg~ptrdcLf~Dp~~d~~~lLKIwn~n--~~~gviGvFN~qga~w~~~~~ 652 (817)
+++.+.+.+-+.+.-|..++ ++.... .|.+-+- + ..++ -+-||... .+.-+||+||-....
T Consensus 270 ~g~Dl~~~~~~~~~il~N~e--~iai~qd~~g~~~~~-v----~~~g--~~~vw~~~l~~g~~~v~~~N~~~~~------ 334 (397)
T 3a5v_A 270 LGNDVTNITNTTKEIIMNKE--VIAVNQDSSFSPANR-I----WVKG--DQQLFSGNLANNTQVVILLNAGDSA------ 334 (397)
T ss_dssp ECSCSSSCCHHHHHHHCCHH--HHHHHTCTTCCCCEE-E----EEET--TEEEEEEEETTTEEEEEEEECSSSC------
T ss_pred ECCCHHHCCHHHHHHHCCHH--HHHHCCCCCCCCCEE-E----ECCC--CCEEEEEECCCCCEEEEEEECCCCC------
T ss_conf 54760018988997733899--986344434666414-3----2389--8258999979997899999779997------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEECCCCEEEEEECCCCEEEEEEEEEEE
Q ss_conf 11248887664267530577420001233357799529999915873-88613888089984289549999932112
Q 003471 653 RCRAYPQCYKSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDN-LTVVKSNEQINITLQPSSFELFTISPVHR 728 (817)
Q Consensus 653 ~~~~~~~~~~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~-l~~l~~~~~~~vtL~~~~~ei~t~~Pv~~ 728 (817)
.+-++..+++..+.. .+......|.|+..=+++ +... ...+.++|++.+.-+|.+.|+..
T Consensus 335 -----------~~~~v~l~~lg~~~~---~~~~~~~~~~v~DlW~~~~~g~~--~~~~~~~v~~hg~~l~~l~~~~~ 395 (397)
T 3a5v_A 335 -----------AKMTATWDDIWVYNL---PNVDSSRSIEVRDLWKQKSLGNF--SNHITLDVPAHGVRLLKFMDSAT 395 (397)
T ss_dssp -----------EEEEEEHHHHTGGGT---TSBCTTCCEEEEETTTTEEEEEE--CSEEEEEECTTEEEEEEESSCCB
T ss_pred -----------EEEEEEHHHHCCCCC---CCCCCCCCEEEEECCCCCCCCCC--CCEEEEEECCCEEEEEEEEECCC
T ss_conf -----------679988999368645---56677880599987899744522--66089999987089999982578
No 8
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=1.00 E-value=1 Score=243.40 Aligned_cols=346 Identities=16% Similarity=0.192 Sum_probs=230.7
Q ss_pred CCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 24465530101236----------8977799999999978999---9199980686566689997333442100122000
Q 003471 200 DKFGWCSWDAFYLT----------VEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQM 266 (817)
Q Consensus 200 d~~GWcTW~af~~~----------vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~ 266 (817)
.+|||||||+|+++ +||+.|++.++.|++.|++ ++|++||||||...|+.++
T Consensus 9 ppmGWnsW~~~~~~~d~~~~~~~~i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~~rd~~G--------------- 73 (404)
T 3hg3_A 9 PTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEG--------------- 73 (404)
T ss_dssp CCEEEESHHHHTTCCCTTTCTTTSSSHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCSSCCTTS---------------
T ss_pred CCEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCCCC---------------
T ss_conf 96377757655558654545567859999999999999777476598199998876778878899---------------
Q ss_pred HCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0001233236-322134458777999998871024688999999999875433107976679993210124776565211
Q 003471 267 LCRLYRLKEN-EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQE 345 (817)
Q Consensus 267 ~~rL~~f~~n-~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 345 (817)
++.++ .|||
T Consensus 74 -----~~~~~~~kFP----------------------------------------------------------------- 83 (404)
T 3hg3_A 74 -----RLQADPQRFP----------------------------------------------------------------- 83 (404)
T ss_dssp -----CCCBCTTTST-----------------------------------------------------------------
T ss_pred -----CEEECHHHCC-----------------------------------------------------------------
T ss_conf -----8600854359-----------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 47568999999985499768985200024568657883368873265200234733444322101200279644395627
Q 003471 346 RGGLMALVSDLKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQA 425 (817)
Q Consensus 346 ~~GLk~~V~~ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~ 425 (817)
+||+.+++.|+++ |+| +|+|.. ++. .+ | +|. +..
T Consensus 84 -~Gl~~l~~~ih~~--Glk-~Giw~~---------~g~----~t----C--------------------~~~-----pGs 117 (404)
T 3hg3_A 84 -HGIRQLANYVHSK--GLK-LGIYAD---------VGN----KT----C--------------------AGF-----PGS 117 (404)
T ss_dssp -THHHHHHHHHHHT--TCE-EEEEEE---------SSS----BC----T--------------------TSS-----BCC
T ss_pred -CCHHHHHHHHHHC--CCE-EEEEEC---------CCC----CC----C--------------------CCC-----CCC
T ss_conf -9999999999977--973-689953---------786----64----6--------------------898-----762
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHC------
Q ss_conf 78999999999880998999743110121103588468999999999999986103899728717999511101------
Q 003471 426 ADLYEAMHSYLADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQCNDFFFL------ 499 (817)
Q Consensus 426 ~~FYdd~~~~Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~~~~l~~------ 499 (817)
+.+++...+.+++|||||||+|+...- .. .....-+.+|..++.+. ||+|+++ |..+.+...
T Consensus 118 ~~~~~~da~~fa~WGvDylK~D~C~~~--------~~-~~~~~~y~~m~~AL~~t--GRpi~~s-c~w~~~~~~~~~~~~ 185 (404)
T 3hg3_A 118 FGYYDIDAQTFADWGVDLLKFAGCYCD--------SL-ENLADGYKHMSLALNRT--GRSIVYS-CEWPLYMWPFQKPNY 185 (404)
T ss_dssp TTCHHHHHHHHHHHTCCEEEEECCSCS--------CH-HHHHHHHHHHHHHHHHT--TCCCEEE-ECTGGGGTTTSCCCH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCC--------CC-HHHHHHHHHHHHHHHHC--CCCEEEE-ECCCCCCCCCCCCCH
T ss_conf 787999999999859818986476787--------52-45789999999999960--9988998-078866565566236
Q ss_pred --CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH-----HHCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHH
Q ss_conf --344100110358877789999999752102357867-----20012012478789974233553-----314788988
Q 003471 500 --ATKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIH-----CSYNSLWQGQFIQPDWDMFQSDH-----ICAEFHAGS 567 (817)
Q Consensus 500 --~~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~Hi~~-----nAyNsl~~g~~~~PDwDMF~S~h-----~~a~~HAaa 567 (817)
-...+.+||+++|+++.+. .-..|+. ++..+-+.++..|+|.||+...+ .-.+.|.+.
T Consensus 186 ~~~~~~~n~WR~~~Di~d~W~----------sv~~i~~~~~~~~~~~~~~agpG~wnDpDML~vGn~glT~~E~rthfsl 255 (404)
T 3hg3_A 186 TEIRQYCNHWRNFADIDDSWK----------SIKSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMAL 255 (404)
T ss_dssp HHHHHHCSEEECSCCCCSSHH----------HHHHHHHHHHHTHHHHTTTCBTTBEEECCCBCTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHCCEEEECCCCCCCHH----------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 777501737895398575667----------7999998876542566750489886897612228999898999999999
Q ss_pred HHHCCCCEEEECCCCCCCHHHHHHHCCCCCCEECCCC--CCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEEECC
Q ss_conf 7742996686138999827755322089983211245--677775322345678875338998325--653289986327
Q 003471 568 RAICGGPVYVSDKVGHHNFDLLRKLVLPDGTILRCQH--YALPTRDCLFENPLFDAKTLLKIWNLN--KFAGVVGVFNCQ 643 (817)
Q Consensus 568 RaisGGPVYiSD~pG~hd~~LLk~Lv~pdG~ilR~~~--pg~ptrdcLf~Dp~~d~~~lLKIwn~n--~~~gviGvFN~q 643 (817)
+||.+.|+.+++..-+-+-+-|.-|+.++ |+.... .|++.+. + ..++ -+-||... .+.-+|++||-.
T Consensus 256 Wai~~sPLiiG~Dl~~~~~~tl~iLtN~e--vIAinQD~lG~q~~~-v----~~~~--~~~VW~~~l~~g~~aValfN~~ 326 (404)
T 3hg3_A 256 WAIMAAPLFMSNDLRHISPQAKALLQDKD--VIAINQDPLGKQGYQ-L----RQGD--NFEVWERPLSGLAWAVAMINRQ 326 (404)
T ss_dssp HHHTTCCEEECSCTTSCCHHHHHHHTCHH--HHHHHTCTTCCCCEE-E----EEET--TEEEEEEECSTTCEEEEEEECC
T ss_pred HHHHCCCEEECCCCCCCCHHHHHHHCCHH--HHHHHCCCCCCCCEE-E----EECC--CEEEEEEECCCCCEEEEEEECC
T ss_conf 99855854841772428989998865988--875522556776469-8----8659--8589999979997899999758
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEE-EEECCCCEEEEEECCCCEEEEE
Q ss_conf 898753343112488876642675305774200012333577995299999158738-8613888089984289549999
Q 003471 644 GAGWYPEEHRCRAYPQCYKSISGVISADDVEWEQKDSTAVYRNTEQFAVYLHKSDNL-TVVKSNEQINITLQPSSFELFT 722 (817)
Q Consensus 644 ga~w~~~~~~~~~~~~~~~~vs~~v~~~Dv~~~~~~~~a~~~~~~~~~vy~~~sg~l-~~l~~~~~~~vtL~~~~~ei~t 722 (817)
..+ .+.+-++..+++... . ....+.|.|+.--+++- ........+.++|++.+.-+|.
T Consensus 327 ~~~---------------~~~~vtv~~~~lGl~---~---~~~~~~~~vrDLW~~~~lg~~~~~~~~~~~V~pHg~~llr 385 (404)
T 3hg3_A 327 EIG---------------GPRSYTIAVASLGKG---V---ACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQ 385 (404)
T ss_dssp CSS---------------SCEEEEEEGGGSGGG---T---TTSSEEEEEEEESSCEEEEEEETTCEEEEEECTTCEEEEE
T ss_pred CCC---------------CCEEEEEEHHHCCCC---C---CCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 988---------------766999889992986---3---4789825999888996024103466389999998089999
Q ss_pred EEEEEE
Q ss_conf 932112
Q 003471 723 ISPVHR 728 (817)
Q Consensus 723 ~~Pv~~ 728 (817)
+.|...
T Consensus 386 lt~~~~ 391 (404)
T 3hg3_A 386 LENTMQ 391 (404)
T ss_dssp EEEHHH
T ss_pred EECCCC
T ss_conf 981786
No 9
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=1.00 E-value=1 Score=235.38 Aligned_cols=303 Identities=16% Similarity=0.227 Sum_probs=195.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 244655301012368977799999999978999---91999806865666899973334421001220000001233236
Q 003471 200 DKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLP---PRFLIIDDGWQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKEN 276 (817)
Q Consensus 200 d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~n 276 (817)
.+|||||||+|++++||+.|++.++.|++.|++ ++|++||||||. .|+.. -++.+|
T Consensus 30 PpmGWNSW~~~~~~i~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDDGW~~-~rd~~--------------------G~~~~d 88 (479)
T 3lrk_A 30 PQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWSS-GRDSD--------------------GFLVAD 88 (479)
T ss_dssp CCEEEESHHHHTTCCCHHHHHHHHHHHHHTTCGGGTCCEEECCSSCEE-EECTT--------------------SCEEEC
T ss_pred CCEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCCCC--------------------CCEECC
T ss_conf 956998257238678999999999999866850039628998872334-66889--------------------898258
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -3221344587779999988710246889999999998754331079766799932101247765652114756899999
Q 003471 277 -EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEEGGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSD 355 (817)
Q Consensus 277 -~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ 355 (817)
.||| +||+.+++.
T Consensus 89 ~~kFP------------------------------------------------------------------~Glk~Lad~ 102 (479)
T 3lrk_A 89 EQKFP------------------------------------------------------------------NGMGHVADH 102 (479)
T ss_dssp TTTCT------------------------------------------------------------------TCHHHHHHH
T ss_pred HHHCC------------------------------------------------------------------CCHHHHHHH
T ss_conf 66558------------------------------------------------------------------899999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99854997689852000245686578833688732652002347334443221012002796443956277899999999
Q 003471 356 LKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGLQNTMNDLAVDMIIEGGLGLVNPNQAADLYEAMHSY 435 (817)
Q Consensus 356 ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~~~~~~d~a~~~~~~~g~~~v~p~~~~~FYdd~~~~ 435 (817)
||++ |+| +|+|.. |+.+ .|...| ..+.+++...+.
T Consensus 103 ih~~--GlK-fGIw~~---------pG~~--------tC~~~p-------------------------Gsl~~~~~da~~ 137 (479)
T 3lrk_A 103 LHNN--SFL-FGMYSS---------AGEY--------TCAGYP-------------------------GSLGREEEDAQF 137 (479)
T ss_dssp HHHT--TCE-EEEEEE---------SSSB--------CTTSSB-------------------------CCTTCHHHHHHH
T ss_pred HHHC--CCE-EEEEEC---------CCCC--------CCCCCC-------------------------CHHHHHHHHHHH
T ss_conf 9977--983-699943---------7655--------104788-------------------------546779999999
Q ss_pred HHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCH--HHHCCCCCEEEECCCCCC
Q ss_conf 988099899974311012110358846899999999999998610389972871799951--110134410011035887
Q 003471 436 LADVGISGVKVDVIHTLEYVSEDHGGRVQLAKAYYDGLNKSLQKNFAGSGLIASMEQCND--FFFLATKQVSMGRVGDDF 513 (817)
Q Consensus 436 Las~GVD~VKVD~Q~~l~~l~~~~g~rv~la~ay~~Al~~S~~r~F~g~~iI~CMs~~~~--~l~~~~~~a~~~R~SDDF 513 (817)
+++|||||||+|....... .+ ..+....-+.+|..++.+. ||+|++++|.... ........+.+||+++|+
T Consensus 138 fa~WGVDylK~D~c~~~~~----~~-~~~~~~~~y~~m~~AL~~t--GRpI~~Slc~Wg~~~~~~w~~~~~n~WR~s~DI 210 (479)
T 3lrk_A 138 FANNRVDYLKYDNCYNKGQ----FG-TPEISYHRYKAMSDALNKT--GRPVFYSLCNWGQDLTFYWGSGIANSWRMSGDV 210 (479)
T ss_dssp HHHTTCCEEEEECTTCTTC----CS-SHHHHHHHHHHHHHHHHHH--CSCCEEEECSTTTTTHHHHSTTTCSEEECSSCB
T ss_pred HHHHCCCEEEECCCCCCCC----CC-CCCHHHHHHHHHHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHCCEEEECCCC
T ss_conf 9982986899726778655----68-7200178999999999986--998289955676676255666438730525886
Q ss_pred CCCCCCCCC--------CCC----C-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHCCCCE
Q ss_conf 778999999--------975----2-10235786720012012478789974233553-----31478898877429966
Q 003471 514 WFQDPNGDP--------MGA----F-WLQGVHMIHCSYNSLWQGQFIQPDWDMFQSDH-----ICAEFHAGSRAICGGPV 575 (817)
Q Consensus 514 ~p~~p~g~~--------~~~----~-~sh~~Hi~~nAyNsl~~g~~~~PDwDMF~S~h-----~~a~~HAaaRaisGGPV 575 (817)
++.+..-+. ... . .|-.-.+-.++..+-+.++..|+|.||+...+ ...+.|.+.+||.+.|+
T Consensus 211 ~d~W~~~~~~~~~~~~~~~~~~~g~~~sv~~i~~~~~~~~~~agpG~wNDpDML~vGn~glT~~E~rthfslWai~~SPL 290 (479)
T 3lrk_A 211 TAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPL 290 (479)
T ss_dssp CSCSSCCCTTSCSCTTCSSCSCCCSCBCHHHHHHHHGGGGGGCBTTBEEECCSBCTTSTTCCHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 66655533343223432223345522359999997655564059998789886766899989899999999999872954
Q ss_pred EEECCCCCCCHHHHHHHCCCCCCEECCCC--CCCCCCCCCCCC--CCCC--CCCEEEEEECC--CCCEEEEEEECCC
Q ss_conf 86138999827755322089983211245--677775322345--6788--75338998325--6532899863278
Q 003471 576 YVSDKVGHHNFDLLRKLVLPDGTILRCQH--YALPTRDCLFEN--PLFD--AKTLLKIWNLN--KFAGVVGVFNCQG 644 (817)
Q Consensus 576 YiSD~pG~hd~~LLk~Lv~pdG~ilR~~~--pg~ptrdcLf~D--p~~d--~~~lLKIwn~n--~~~gviGvFN~qg 644 (817)
++++..-+-+-+.|.-|+.++ |+...+ .|++.+- +..+ +-.| +..-+-||... .+.-+|++||-..
T Consensus 291 iiG~DL~~~~~~tl~iLtN~e--vIAINQD~lG~q~~~-v~~~~~~~~d~~~~~~~~VW~~~l~~G~~aValfN~~~ 364 (479)
T 3lrk_A 291 IIGANVNNLKASSYSIYSQAS--VIAINQDSNGIPATR-VWRYYVSDTDEYGQGEIQMWSGPLDNGDQVVALLNGGS 364 (479)
T ss_dssp EECSCGGGCCHHHHHHHTCHH--HHHHHTCTTCCCCEE-EEEEECSCCCTTSCCEEEEEEEECTTSCEEEEEEECSS
T ss_pred EECCCCCCCCHHHHHHHCCHH--HHHHHCCCCCCCEEE-EEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 722771318988998855999--998762456785289-75035765545689872799999899989999997799
No 10
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=1.00 E-value=1 Score=166.14 Aligned_cols=345 Identities=15% Similarity=0.126 Sum_probs=184.3
Q ss_pred EEECCCHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 9864997899999999-999975437665234675101244655301012368977799999999978999919998068
Q 003471 163 LHVGDNPYELMRDAFA-AVRVYLGTFRLLEEKTVPKIVDKFGWCSWDAFYLTVEPVGLWHGVKSFAENGLPPRFLIIDDG 241 (817)
Q Consensus 163 v~~G~dp~~li~eA~k-~v~~~~~tf~~~~~k~~P~~~d~~GWcTW~af~~~vte~~I~~~l~~L~~~Gl~~~~viIDDG 241 (817)
+..+++=++-+.+++. .++.++..- ....++ .+++||+|+++++++||++|++.++.+++.|+ ++++||||
T Consensus 297 ~~~s~~g~~~~s~~~h~~~r~~~~~~-~~~~~~-----rPv~~NsW~a~~~d~~e~~i~~~ad~aa~lG~--e~fviDDG 368 (729)
T 4fnq_A 297 MVYSDQGLNGMSQTYHELYRTRLARG-AFRDRE-----RPILINNWEATYFDFNEEKLVNIAKTEAELGI--ELFVLDDG 368 (729)
T ss_dssp EEEESBHHHHHHHHHHHHHHHHTSCS-TTTTSC-----CCCEEECSTTTTTCCCHHHHHHHHHHHHHHTC--CEEEECSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCC-CCCCCC-----CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEECCE
T ss_conf 99974977899999999999732788-644568-----63697065554225898999999999986386--29997662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65666899973334421001220000001233236-32213445877799999887102468899999999987543310
Q 003471 242 WQSINMDHEPALQDSKDLTTLGSQMLCRLYRLKEN-EKFAKYKSGTMLRPNAPKFDQEKHDAMFKEMVALAEKKRKIKEE 320 (817)
Q Consensus 242 WQ~~~~~~~~~~~~~~~~~~~~~q~~~rL~~f~~n-~KF~~~~~g~~~~p~~~~~dp~~~~~~~~~~~~~~~~~~~~a~~ 320 (817)
||...++.. ..+-+..+| .|||
T Consensus 369 Wf~~r~~d~-----------------~~lGdW~~d~~kFP---------------------------------------- 391 (729)
T 4fnq_A 369 WFGKRDDDR-----------------RSLGDWIVNRRKLP---------------------------------------- 391 (729)
T ss_dssp CBTTCCSTT-----------------SCTTCCSBCTTTCT----------------------------------------
T ss_pred EECCCCCCC-----------------CCCCCEEECHHHCC----------------------------------------
T ss_conf 455789886-----------------56776777766667----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 79766799932101247765652114756899999998549976898520002456865788336887326520023473
Q 003471 321 GGDVLALPSPKTIEYLNDDEDDGQERGGLMALVSDLKEKYQTLDDVYVWHALCGAWGGFRPGTIAGLEAKVTSAKLAAGL 400 (817)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~GLk~~V~~ik~~~~~ik~V~VWHAL~GYWGGi~P~~~~~y~~~~~~~~~spg~ 400 (817)
+|||.+++.||++ |+| .|+|...- -+.|+. .+. . ..|.-
T Consensus 392 --------------------------~Glk~Lad~vh~~--Gmk-fGLW~epe----~v~~~S------~l~-~-~hPdw 430 (729)
T 4fnq_A 392 --------------------------NGLDGLAKQVNEL--GMQ-FGLWVEPE----MVSPNS------ELY-R-KHPDW 430 (729)
T ss_dssp --------------------------THHHHHHHHHHHT--TCE-EEEEECTT----EECSSS------HHH-H-HCGGG
T ss_pred --------------------------CCHHHHHHHHHHC--CCE-EEEEEECC----CCCCCC------HHH-H-HCCHH
T ss_conf --------------------------3099999999978--988-99996336----418986------888-7-59362
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCHHHHH-HHHHHHHHHHCCCCEEEECCCCCHHHHCCC-CC----C--HHHHHHHH
Q ss_conf 3444322101200279---644395627789-999999998809989997431101211035-88----4--68999999
Q 003471 401 QNTMNDLAVDMIIEGG---LGLVNPNQAADL-YEAMHSYLADVGISGVKVDVIHTLEYVSED-HG----G--RVQLAKAY 469 (817)
Q Consensus 401 ~~~~~d~a~~~~~~~g---~~~v~p~~~~~F-Ydd~~~~Las~GVD~VKVD~Q~~l~~l~~~-~g----~--rv~la~ay 469 (817)
....+. ........ +-+.+| .++++ ++.+.+.+++|||||+|.|....+...+.. +. + .....+++
T Consensus 431 ~~~~~~--~~~~~~r~q~~LD~~~P-~v~~y~~~~i~~ll~~~GidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (729)
T 4fnq_A 431 CLHVPN--RPRSEGRNQLVLDYSRE-DVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQRETAHRYMLGL 507 (729)
T ss_dssp BCCCTT--SCCCCBTTBEEBCTTSH-HHHHHHHHHHHHHHTTTTCCEEEEECCCCCCSCCCTTSCGGGGGGHHHHHHHHH
T ss_pred EECCCC--CCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 022676--68735776420167776-689999999999998779878997478787767787888233205799999999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHCC-CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC--
Q ss_conf 9999999861038997287179995111013-4410011035887778999999975210235786720012012478--
Q 003471 470 YDGLNKSLQKNFAGSGLIASMEQCNDFFFLA-TKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWQGQF-- 546 (817)
Q Consensus 470 ~~Al~~S~~r~F~g~~iI~CMs~~~~~l~~~-~~~a~~~R~SDDF~p~~p~g~~~~~~~sh~~Hi~~nAyNsl~~g~~-- 546 (817)
++.++ .+.+.|++--+-+|-+....+-+.. .+...+ +.||+..+. .+..|.. ..+++.-..
T Consensus 508 y~l~d-~L~~~~P~i~ie~C~~Gg~r~d~~~l~~~~~~-w~SD~~d~~------------~r~~i~~--g~s~~~p~~~~ 571 (729)
T 4fnq_A 508 YRVMD-EMTSRFPHILFESCSGGGGRFDPGMLYYMPQT-WTSDNTDAV------------SRLKIQY--GTSLVYPISAM 571 (729)
T ss_dssp HHHHH-HHHHHCTTCEEEEEBTBBTTCSHHHHTTSSEE-ECBSCCCHH------------HHHHHHH--HHTTTSCGGGE
T ss_pred HHHHH-HHHHHCCCCEEECCCCCCCCCCCHHHHCCCCE-EECCCCCHH------------HHHHHHH--CHHCCCCCHHC
T ss_conf 99999-99987889588715688898665065036641-156774067------------7899873--60103680315
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC---CCHHHHHHHCC---------CCCCEECCCCCCCCCCCC
Q ss_conf --7899742335533147889887742996686138999---82775532208---------998321124567777532
Q 003471 547 --IQPDWDMFQSDHICAEFHAGSRAICGGPVYVSDKVGH---HNFDLLRKLVL---------PDGTILRCQHYALPTRDC 612 (817)
Q Consensus 547 --~~PDwDMF~S~h~~a~~HAaaRaisGGPVYiSD~pG~---hd~~LLk~Lv~---------pdG~ilR~~~pg~ptrdc 612 (817)
..+|.++-++.. ...++..+++...||+.++..+.+ ...++||+++. ..|.+.|...|
T Consensus 572 g~hv~~~~~~~~gr-~t~~e~r~~~al~g~l~~~~dl~~ls~e~~~~lk~~Ia~yK~~r~li~~G~~~rl~~p------- 643 (729)
T 4fnq_A 572 GAHVSAVPNHQVGR-VASLKARGHVAMSGNFGYELDITKLTETEKQMIKQQVAFYKDVRRLVQFGTFYRLLSP------- 643 (729)
T ss_dssp EEEEECSSCSSSCC-CCCHHHHHHHHTTSEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECT-------
T ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC-------
T ss_conf 35766873467767-1459999999987531216371459999999999999999987798737209924899-------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 234567887533899832565328998632789
Q 003471 613 LFENPLFDAKTLLKIWNLNKFAGVVGVFNCQGA 645 (817)
Q Consensus 613 Lf~Dp~~d~~~lLKIwn~n~~~gviGvFN~qga 645 (817)
..++....-.-+.++..+|+.+||....
T Consensus 644 -----~~~~~~~~~~v~~d~~~avv~~~~~~~~ 671 (729)
T 4fnq_A 644 -----FEGNEAAWMFVSADRSEALVAYFRVLAE 671 (729)
T ss_dssp -----TSSSEEEEEEECTTSSEEEEEEEEEEEC
T ss_pred -----CCCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf -----9998279999978999899999966788
Done!