Query 003472
Match_columns 817
No_of_seqs 365 out of 3158
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 00:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02974 adenosylmethionine-8- 100.0 5E-125 1E-129 1125.7 69.9 765 24-816 14-784 (817)
2 COG0161 BioA Adenosylmethionin 100.0 2.7E-85 5.8E-90 726.1 34.4 398 357-816 9-409 (449)
3 COG0160 GabT 4-aminobutyrate a 100.0 3.8E-79 8.3E-84 681.2 36.8 370 374-816 37-408 (447)
4 COG4992 ArgD Ornithine/acetylo 100.0 3.6E-79 7.8E-84 663.3 35.1 340 375-816 24-363 (404)
5 KOG1404 Alanine-glyoxylate ami 100.0 1.2E-75 2.5E-80 621.9 30.0 368 374-816 31-401 (442)
6 PRK07482 hypothetical protein; 100.0 1.5E-74 3.3E-79 662.0 39.2 405 350-816 5-418 (461)
7 PRK07481 hypothetical protein; 100.0 6.7E-74 1.5E-78 655.0 39.6 401 355-816 4-411 (449)
8 PRK05965 hypothetical protein; 100.0 1.3E-73 2.8E-78 654.1 37.9 399 354-816 7-412 (459)
9 PRK06943 adenosylmethionine--8 100.0 2.2E-72 4.7E-77 642.5 38.7 398 354-816 15-412 (453)
10 PRK08742 adenosylmethionine--8 100.0 2.5E-72 5.4E-77 643.8 38.9 401 353-816 23-433 (472)
11 PRK07678 aminotransferase; Val 100.0 5.6E-72 1.2E-76 639.5 38.9 397 352-816 9-408 (451)
12 PRK07030 adenosylmethionine--8 100.0 2.1E-71 4.6E-76 636.0 38.8 399 354-816 8-412 (466)
13 PLN02760 4-aminobutyrate:pyruv 100.0 2.3E-71 5E-76 640.0 39.3 398 357-816 53-457 (504)
14 PRK07036 hypothetical protein; 100.0 3.1E-71 6.8E-76 635.1 39.3 400 353-816 11-418 (466)
15 PRK07480 putative aminotransfe 100.0 5E-71 1.1E-75 631.8 38.5 396 355-816 12-414 (456)
16 PRK06105 aminotransferase; Pro 100.0 1.6E-70 3.4E-75 628.7 39.7 401 353-816 8-415 (460)
17 PRK06916 adenosylmethionine--8 100.0 1.3E-70 2.9E-75 629.3 37.2 399 354-816 17-421 (460)
18 PRK12403 putative aminotransfe 100.0 2.6E-70 5.6E-75 626.9 38.7 396 355-816 16-418 (460)
19 PRK07483 hypothetical protein; 100.0 2.9E-70 6.2E-75 623.8 38.0 378 375-816 12-395 (443)
20 PRK06062 hypothetical protein; 100.0 4.1E-70 8.9E-75 623.8 38.0 386 355-817 18-412 (451)
21 PRK06541 hypothetical protein; 100.0 3.5E-68 7.6E-73 609.0 39.8 400 352-816 11-418 (460)
22 PRK06917 hypothetical protein; 100.0 6.2E-68 1.3E-72 605.2 38.5 374 378-816 16-395 (447)
23 PRK05630 adenosylmethionine--8 100.0 5.3E-68 1.1E-72 601.7 37.2 380 355-816 6-386 (422)
24 PRK06173 adenosylmethionine--8 100.0 6.3E-68 1.4E-72 601.9 36.6 382 356-816 9-391 (429)
25 TIGR03372 putres_am_tran putre 100.0 7.4E-68 1.6E-72 601.9 35.9 349 376-816 58-407 (442)
26 PRK06938 diaminobutyrate--2-ox 100.0 1.1E-67 2.3E-72 605.2 37.4 368 375-816 45-423 (464)
27 PRK13360 omega amino acid--pyr 100.0 2.3E-67 5E-72 599.8 38.7 392 359-816 13-406 (442)
28 PRK07986 adenosylmethionine--8 100.0 1.3E-67 2.8E-72 598.9 36.4 380 357-816 9-389 (428)
29 PRK09221 beta alanine--pyruvat 100.0 2.9E-67 6.3E-72 599.4 39.0 393 358-816 15-409 (445)
30 PRK11522 putrescine--2-oxoglut 100.0 2.5E-67 5.5E-72 601.0 35.9 351 374-816 62-414 (459)
31 KOG1401 Acetylornithine aminot 100.0 4.8E-67 1E-71 560.6 33.3 337 373-794 36-373 (433)
32 PRK06931 diaminobutyrate--2-ox 100.0 1.2E-66 2.6E-71 596.2 37.3 368 375-816 40-417 (459)
33 PRK05639 4-aminobutyrate amino 100.0 2.6E-66 5.7E-71 592.7 37.3 371 375-816 35-406 (457)
34 PRK06082 4-aminobutyrate amino 100.0 5.1E-66 1.1E-70 591.0 37.3 372 359-816 43-416 (459)
35 PF00202 Aminotran_3: Aminotra 100.0 1.1E-66 2.3E-71 576.0 29.4 339 378-793 1-339 (339)
36 KOG1402 Ornithine aminotransfe 100.0 4E-66 8.6E-71 536.9 27.0 350 376-816 42-392 (427)
37 PRK06058 4-aminobutyrate amino 100.0 5.1E-65 1.1E-69 581.7 36.7 366 375-816 38-405 (443)
38 PRK08593 4-aminobutyrate amino 100.0 1.1E-64 2.4E-69 578.5 37.9 368 375-816 24-394 (445)
39 TIGR00709 dat 2,4-diaminobutyr 100.0 2.6E-64 5.7E-69 575.4 37.3 368 375-816 21-398 (442)
40 PRK05964 adenosylmethionine--8 100.0 6.6E-64 1.4E-68 569.8 38.0 385 353-816 4-388 (423)
41 PRK05769 4-aminobutyrate amino 100.0 1.9E-63 4E-68 567.8 36.7 367 375-816 36-404 (441)
42 PRK06148 hypothetical protein; 100.0 2.3E-63 5.1E-68 613.9 38.7 365 375-816 606-973 (1013)
43 PRK07495 4-aminobutyrate amino 100.0 1.4E-62 3.1E-67 558.0 36.8 360 376-816 23-384 (425)
44 PRK12389 glutamate-1-semialdeh 100.0 2E-62 4.3E-67 558.0 37.9 352 375-816 35-394 (428)
45 PRK08117 4-aminobutyrate amino 100.0 1.3E-61 2.8E-66 552.5 37.9 366 376-816 26-392 (433)
46 TIGR00508 bioA adenosylmethion 100.0 2.5E-61 5.5E-66 548.4 36.9 383 355-816 9-392 (427)
47 PRK09792 4-aminobutyrate trans 100.0 3.9E-61 8.5E-66 546.3 37.8 361 375-816 22-384 (421)
48 TIGR00699 GABAtrns_euk 4-amino 100.0 4.1E-61 8.8E-66 547.8 35.2 371 375-816 40-431 (464)
49 TIGR00700 GABAtrnsam 4-aminobu 100.0 1.2E-60 2.6E-65 542.6 38.5 368 374-816 14-383 (420)
50 PRK07046 aminotransferase; Val 100.0 2E-60 4.4E-65 543.6 39.8 387 336-816 16-418 (453)
51 PRK06777 4-aminobutyrate amino 100.0 1.2E-60 2.5E-65 542.4 36.8 360 376-816 23-384 (421)
52 TIGR02407 ectoine_ectB diamino 100.0 7.7E-61 1.7E-65 542.5 34.6 353 375-816 17-375 (412)
53 PRK06149 hypothetical protein; 100.0 1.1E-60 2.4E-65 589.8 37.5 364 375-816 567-933 (972)
54 PRK08297 L-lysine aminotransfe 100.0 1.6E-60 3.6E-65 543.6 36.0 368 378-816 29-406 (443)
55 PRK08360 4-aminobutyrate amino 100.0 4.9E-60 1.1E-64 539.7 38.0 366 375-816 23-391 (443)
56 PRK04013 argD acetylornithine/ 100.0 1.3E-60 2.8E-65 530.7 32.3 321 374-816 5-325 (364)
57 PRK06918 4-aminobutyrate amino 100.0 5E-60 1.1E-64 541.9 37.8 367 376-816 37-406 (451)
58 COG0001 HemL Glutamate-1-semia 100.0 3.6E-60 7.9E-65 519.7 34.4 376 350-816 7-395 (432)
59 PRK04612 argD acetylornithine 100.0 3.5E-60 7.7E-65 535.8 35.1 347 375-816 22-368 (408)
60 PRK00615 glutamate-1-semialdeh 100.0 9.7E-60 2.1E-64 534.9 38.7 350 374-816 34-395 (433)
61 PRK09264 diaminobutyrate--2-ox 100.0 3.9E-60 8.6E-65 538.9 35.5 353 375-816 21-379 (425)
62 PRK03715 argD acetylornithine 100.0 4.7E-60 1E-64 533.1 34.3 323 375-794 18-340 (395)
63 PLN02482 glutamate-1-semialdeh 100.0 2E-59 4.3E-64 536.7 36.4 348 375-816 81-440 (474)
64 PLN00144 acetylornithine trans 100.0 4.2E-59 9.2E-64 523.5 34.0 343 380-816 2-344 (382)
65 TIGR03246 arg_catab_astC succi 100.0 9.1E-59 2E-63 523.6 35.0 344 375-816 17-360 (397)
66 TIGR03251 LAT_fam L-lysine 6-t 100.0 1.4E-58 3E-63 526.8 36.0 367 379-816 23-399 (431)
67 PRK12381 bifunctional succinyl 100.0 6.9E-57 1.5E-61 509.7 35.3 344 375-816 21-364 (406)
68 KOG1403 Predicted alanine-glyo 100.0 3.1E-58 6.8E-63 472.1 21.6 366 374-813 28-396 (452)
69 PLN02624 ornithine-delta-amino 100.0 7E-56 1.5E-60 509.8 37.1 351 375-816 57-409 (474)
70 PRK06209 glutamate-1-semialdeh 100.0 2.4E-53 5.2E-58 483.8 37.9 344 374-816 29-377 (431)
71 PRK00062 glutamate-1-semialdeh 100.0 2.1E-53 4.5E-58 484.0 36.4 353 375-816 32-391 (426)
72 TIGR00713 hemL glutamate-1-sem 100.0 6.6E-53 1.4E-57 479.6 36.4 353 375-816 30-389 (423)
73 PRK04073 rocD ornithine--oxo-a 100.0 1.4E-52 3.1E-57 472.9 34.0 340 375-816 22-362 (396)
74 PRK08088 4-aminobutyrate amino 100.0 1.5E-51 3.3E-56 468.8 37.8 361 375-816 23-386 (425)
75 PRK01278 argD acetylornithine 100.0 7.5E-52 1.6E-56 465.7 34.5 340 375-816 13-353 (389)
76 TIGR01885 Orn_aminotrans ornit 100.0 1E-50 2.2E-55 458.5 35.0 348 375-816 19-367 (401)
77 PRK05093 argD bifunctional N-s 100.0 1.6E-50 3.4E-55 457.3 35.7 344 375-816 22-365 (403)
78 PRK02936 argD acetylornithine 100.0 7.1E-49 1.5E-53 439.5 35.5 334 375-816 11-344 (377)
79 PRK03244 argD acetylornithine 100.0 9.3E-49 2E-53 441.8 35.0 335 375-816 25-359 (398)
80 PRK00854 rocD ornithine--oxo-a 100.0 4.9E-48 1.1E-52 436.3 35.1 342 376-816 24-366 (401)
81 PTZ00125 ornithine aminotransf 100.0 1.4E-47 3.1E-52 432.1 35.6 347 375-816 13-360 (400)
82 PRK04260 acetylornithine amino 100.0 3.2E-46 7E-51 418.2 34.3 332 375-816 11-342 (375)
83 cd00610 OAT_like Acetyl ornith 100.0 2.9E-45 6.3E-50 414.1 36.8 376 355-816 3-380 (413)
84 PRK02627 acetylornithine amino 100.0 2.2E-45 4.8E-50 413.4 34.4 338 376-816 22-359 (396)
85 KOG1405 4-aminobutyrate aminot 100.0 2E-44 4.3E-49 377.6 23.9 367 381-816 64-448 (484)
86 COG0132 BioD Dethiobiotin synt 100.0 1.6E-38 3.4E-43 326.4 20.3 198 36-317 1-208 (223)
87 TIGR00707 argD acetylornithine 100.0 7.2E-37 1.6E-41 342.1 33.8 338 375-816 9-346 (379)
88 PF13500 AAA_26: AAA domain; P 100.0 7.6E-35 1.6E-39 298.4 16.9 197 38-320 1-199 (199)
89 PRK07505 hypothetical protein; 100.0 3.9E-31 8.6E-36 299.1 26.2 314 376-816 29-357 (402)
90 PRK12374 putative dithiobiotin 100.0 1.2E-30 2.6E-35 273.7 21.1 201 37-325 2-215 (231)
91 PRK00090 bioD dithiobiotin syn 100.0 1.7E-29 3.6E-34 263.2 22.8 203 39-325 1-214 (222)
92 PRK13393 5-aminolevulinate syn 100.0 4.1E-28 8.8E-33 274.9 25.9 296 400-816 46-354 (406)
93 PLN02822 serine palmitoyltrans 100.0 2E-28 4.3E-33 282.7 23.1 320 376-816 93-433 (481)
94 TIGR01821 5aminolev_synth 5-am 100.0 1E-26 2.3E-31 262.9 26.1 296 400-816 46-354 (402)
95 COG0156 BioF 7-keto-8-aminopel 100.0 5.3E-27 1.1E-31 260.4 22.2 298 393-816 37-348 (388)
96 PRK09064 5-aminolevulinate syn 99.9 1.9E-26 4.1E-31 261.1 25.2 296 400-816 47-355 (407)
97 PLN03227 serine palmitoyltrans 99.9 2.4E-26 5.3E-31 259.3 25.2 308 402-816 1-336 (392)
98 PLN02955 8-amino-7-oxononanoat 99.9 2.4E-26 5.1E-31 260.6 23.6 301 400-816 103-419 (476)
99 PRK00784 cobyric acid synthase 99.9 3.1E-26 6.8E-31 264.7 18.3 200 37-320 2-234 (488)
100 TIGR00313 cobQ cobyric acid sy 99.9 5.7E-24 1.2E-28 244.5 17.0 194 40-316 1-227 (475)
101 TIGR00347 bioD dethiobiotin sy 99.9 2.9E-23 6.2E-28 206.5 19.1 165 41-287 1-166 (166)
102 PRK07179 hypothetical protein; 99.9 2.2E-22 4.9E-27 228.1 26.9 303 375-816 44-356 (407)
103 PRK06278 cobyrinic acid a,c-di 99.9 6.3E-23 1.4E-27 233.7 20.1 184 25-312 226-418 (476)
104 PRK13896 cobyrinic acid a,c-di 99.9 1.3E-22 2.8E-27 228.9 19.0 174 37-319 1-181 (433)
105 COG1797 CobB Cobyrinic acid a, 99.9 1.3E-22 2.8E-27 222.4 18.1 176 38-319 1-185 (451)
106 PRK05958 8-amino-7-oxononanoat 99.9 2.7E-21 5.8E-26 216.3 27.0 312 376-816 23-345 (385)
107 PRK01077 cobyrinic acid a,c-di 99.9 6.2E-22 1.3E-26 227.0 18.9 178 36-319 2-187 (451)
108 TIGR00379 cobB cobyrinic acid 99.9 4.7E-22 1E-26 227.6 17.5 172 39-319 1-184 (449)
109 PRK13392 5-aminolevulinate syn 99.9 5.4E-21 1.2E-25 217.0 23.5 297 400-816 47-355 (410)
110 TIGR01825 gly_Cac_T_rel pyrido 99.9 2.3E-20 4.9E-25 209.4 26.4 313 376-816 17-339 (385)
111 PRK05937 8-amino-7-oxononanoat 99.9 1.9E-20 4E-25 209.9 24.5 291 400-816 5-312 (370)
112 COG1492 CobQ Cobyric acid synt 99.9 2.5E-22 5.4E-27 224.1 8.5 211 37-317 1-231 (486)
113 cd03109 DTBS Dethiobiotin synt 99.8 2.7E-20 5.9E-25 179.2 15.7 89 221-311 39-134 (134)
114 KOG1359 Glycine C-acetyltransf 99.8 8.5E-20 1.8E-24 188.8 19.8 306 377-816 50-370 (417)
115 PRK05632 phosphate acetyltrans 99.8 2.4E-20 5.3E-25 223.6 17.6 184 37-329 2-212 (684)
116 PRK06939 2-amino-3-ketobutyrat 99.8 1.9E-18 4.2E-23 194.3 26.8 315 378-816 27-351 (397)
117 TIGR01822 2am3keto_CoA 2-amino 99.8 2.6E-18 5.7E-23 193.4 27.3 316 377-816 22-347 (393)
118 TIGR00858 bioF 8-amino-7-oxono 99.8 2.9E-18 6.3E-23 189.8 26.9 310 379-816 3-323 (360)
119 PLN02483 serine palmitoyltrans 99.8 4.1E-18 8.9E-23 197.5 28.8 330 374-816 77-424 (489)
120 KOG1360 5-aminolevulinate synt 99.8 3.6E-19 7.7E-24 190.4 15.6 253 410-766 179-446 (570)
121 cd06454 KBL_like KBL_like; thi 99.7 2.1E-16 4.5E-21 174.5 24.8 298 400-816 2-309 (349)
122 cd00613 GDC-P Glycine cleavage 99.7 4.8E-15 1E-19 167.2 23.1 306 406-816 23-366 (398)
123 TIGR03576 pyridox_MJ0158 pyrid 99.6 3.8E-14 8.3E-19 157.6 21.4 219 410-744 27-251 (346)
124 COG0857 Pta BioD-like N-termin 99.5 2.7E-13 5.8E-18 149.3 13.9 194 36-322 1-212 (354)
125 cd00609 AAT_like Aspartate ami 99.4 6.7E-12 1.5E-16 137.6 20.0 178 617-815 130-314 (350)
126 KOG1357 Serine palmitoyltransf 99.4 1.3E-11 2.7E-16 135.5 17.9 243 400-747 137-398 (519)
127 PRK06225 aspartate aminotransf 99.4 1.2E-10 2.6E-15 131.1 24.9 301 400-816 29-336 (380)
128 PRK13520 L-tyrosine decarboxyl 99.4 8.3E-11 1.8E-15 131.3 23.0 293 414-816 30-335 (371)
129 PRK03317 histidinol-phosphate 99.3 8.7E-11 1.9E-15 131.6 22.3 163 622-816 164-331 (368)
130 PRK13034 serine hydroxymethylt 99.3 1.6E-10 3.6E-15 131.8 23.3 244 418-762 41-301 (416)
131 TIGR01325 O_suc_HS_sulf O-succ 99.3 8E-11 1.7E-15 132.8 18.6 236 439-792 50-306 (380)
132 cd00614 CGS_like CGS_like: Cys 99.3 7.1E-11 1.5E-15 132.7 17.1 236 440-793 37-294 (369)
133 PRK09331 Sep-tRNA:Cys-tRNA syn 99.2 4.6E-10 1E-14 126.8 20.5 240 411-745 27-277 (387)
134 TIGR02539 SepCysS Sep-tRNA:Cys 99.2 2.8E-10 6E-15 127.9 17.5 201 420-714 19-232 (370)
135 PLN02721 threonine aldolase 99.2 2.8E-09 6.1E-14 118.0 24.0 216 400-711 6-228 (353)
136 KOG1358 Serine palmitoyltransf 99.2 1.3E-10 2.9E-15 125.6 12.6 320 374-816 76-420 (467)
137 TIGR03301 PhnW-AepZ 2-aminoeth 99.1 4.5E-09 9.8E-14 116.3 22.5 292 418-816 11-319 (355)
138 PRK06108 aspartate aminotransf 99.1 7.3E-09 1.6E-13 116.3 24.2 293 418-816 39-343 (382)
139 PRK02731 histidinol-phosphate 99.1 8.9E-09 1.9E-13 115.2 23.9 293 400-816 33-330 (367)
140 cd00616 AHBA_syn 3-amino-5-hyd 99.1 5.2E-09 1.1E-13 115.9 21.5 258 442-816 17-295 (352)
141 TIGR01141 hisC histidinol-phos 99.1 4.9E-09 1.1E-13 116.2 20.3 291 400-816 20-314 (346)
142 PRK13238 tnaA tryptophanase/L- 99.1 1.5E-08 3.3E-13 117.0 24.8 169 602-791 164-352 (460)
143 PRK03158 histidinol-phosphate 99.1 8E-09 1.7E-13 115.3 21.6 291 400-816 30-325 (359)
144 cd06502 TA_like Low-specificit 99.1 2.7E-09 6E-14 117.4 17.2 233 403-741 1-242 (338)
145 PRK08153 histidinol-phosphate 99.1 1.8E-08 3.8E-13 113.2 23.3 167 622-816 159-329 (369)
146 PLN03226 serine hydroxymethylt 99.1 9.9E-09 2.1E-13 118.9 21.3 137 602-761 173-328 (475)
147 cd06453 SufS_like Cysteine des 99.0 2.9E-08 6.3E-13 111.1 24.0 300 412-816 7-332 (373)
148 cd06451 AGAT_like Alanine-glyo 99.0 1.6E-08 3.5E-13 112.4 21.4 187 602-815 114-317 (356)
149 PRK07682 hypothetical protein; 99.0 6.9E-08 1.5E-12 108.6 25.7 229 418-741 35-272 (378)
150 PRK06767 methionine gamma-lyas 99.0 4.1E-09 9E-14 119.2 15.9 163 619-813 146-324 (386)
151 TIGR01814 kynureninase kynuren 99.0 7E-08 1.5E-12 109.8 25.4 191 602-816 159-371 (406)
152 PRK00950 histidinol-phosphate 99.0 2.3E-08 5E-13 111.5 20.6 160 621-816 161-324 (361)
153 PRK07810 O-succinylhomoserine 99.0 2.4E-08 5.2E-13 113.7 19.9 235 440-793 67-324 (403)
154 TIGR02006 IscS cysteine desulf 99.0 5.2E-08 1.1E-12 110.7 22.2 258 400-766 5-278 (402)
155 TIGR01140 L_thr_O3P_dcar L-thr 99.0 4E-08 8.7E-13 108.7 20.4 166 621-816 128-297 (330)
156 TIGR03402 FeS_nifS cysteine de 99.0 7.4E-08 1.6E-12 108.3 22.7 261 401-767 2-271 (379)
157 PRK05764 aspartate aminotransf 99.0 1.6E-07 3.5E-12 106.0 25.5 179 621-816 167-354 (393)
158 PRK07324 transaminase; Validat 98.9 6.1E-08 1.3E-12 109.1 21.7 173 620-815 154-332 (373)
159 cd06452 SepCysS Sep-tRNA:Cys-t 98.9 9.1E-08 2E-12 107.0 22.9 207 414-713 11-224 (361)
160 TIGR01326 OAH_OAS_sulfhy OAH/O 98.9 1.9E-08 4.2E-13 115.0 17.7 163 440-705 54-219 (418)
161 PRK08133 O-succinylhomoserine 98.9 2.5E-08 5.4E-13 113.0 18.3 148 619-793 146-314 (390)
162 TIGR01324 cysta_beta_ly_B cyst 98.9 2.5E-08 5.5E-13 112.4 18.0 249 440-810 47-316 (377)
163 TIGR01328 met_gam_lyase methio 98.9 2.2E-08 4.7E-13 113.6 17.3 149 619-793 144-314 (391)
164 PLN02242 methionine gamma-lyas 98.9 3E-08 6.5E-13 113.3 17.8 172 440-712 73-247 (418)
165 PRK05994 O-acetylhomoserine am 98.9 3.2E-08 6.8E-13 113.5 17.8 161 441-704 61-224 (427)
166 PRK06084 O-acetylhomoserine am 98.9 3.1E-08 6.7E-13 113.5 17.5 163 440-704 55-219 (425)
167 TIGR03235 DNA_S_dndA cysteine 98.9 2.1E-07 4.5E-12 103.6 23.2 255 413-767 7-277 (353)
168 TIGR02326 transamin_PhnW 2-ami 98.9 1.9E-07 4.1E-12 104.4 22.5 169 631-816 140-324 (363)
169 PRK08574 cystathionine gamma-s 98.9 5.6E-08 1.2E-12 110.0 17.9 235 440-793 50-308 (385)
170 cd01494 AAT_I Aspartate aminot 98.9 3.4E-08 7.4E-13 96.5 14.0 79 617-704 90-170 (170)
171 PRK08249 cystathionine gamma-s 98.9 6.3E-08 1.4E-12 110.0 17.9 235 440-793 61-317 (398)
172 PF00155 Aminotran_1_2: Aminot 98.9 1.3E-07 2.8E-12 105.3 20.2 188 602-816 133-331 (363)
173 TIGR03812 tyr_de_CO2_Arch tyro 98.8 5.3E-07 1.1E-11 100.9 24.6 293 418-816 33-340 (373)
174 PRK07777 aminotransferase; Val 98.8 5.3E-07 1.1E-11 101.8 24.8 177 619-815 159-343 (387)
175 PRK07503 methionine gamma-lyas 98.8 1E-07 2.3E-12 108.5 18.9 150 619-793 150-320 (403)
176 PRK06234 methionine gamma-lyas 98.8 7.9E-08 1.7E-12 109.3 17.8 161 619-810 149-333 (400)
177 PRK08960 hypothetical protein; 98.8 1.8E-06 3.8E-11 97.6 28.7 293 418-816 47-347 (387)
178 TIGR03392 FeS_syn_CsdA cystein 98.8 8.2E-07 1.8E-11 100.6 25.8 306 400-816 18-348 (398)
179 PRK07550 hypothetical protein; 98.8 8.9E-07 1.9E-11 99.9 25.6 185 602-816 154-347 (386)
180 TIGR01976 am_tr_V_VC1184 cyste 98.8 1.4E-06 3E-11 98.5 27.0 299 400-816 19-353 (397)
181 PRK00011 glyA serine hydroxyme 98.8 8.6E-07 1.9E-11 101.1 25.3 66 643-712 182-250 (416)
182 cd00378 SHMT Serine-glycine hy 98.8 5.6E-07 1.2E-11 101.9 23.4 92 602-712 151-246 (402)
183 PRK10874 cysteine sulfinate de 98.8 1.9E-06 4.2E-11 97.7 27.3 306 400-816 21-351 (401)
184 PRK06460 hypothetical protein; 98.8 2.5E-07 5.4E-12 104.4 19.7 147 619-793 130-298 (376)
185 TIGR01977 am_tr_V_EF2568 cyste 98.8 9.5E-07 2.1E-11 98.9 24.2 137 619-767 137-286 (376)
186 PRK09295 bifunctional cysteine 98.8 9.1E-07 2E-11 100.6 23.9 268 400-766 25-316 (406)
187 PRK07811 cystathionine gamma-s 98.8 2.2E-07 4.8E-12 105.2 18.8 236 440-793 58-315 (388)
188 PRK10534 L-threonine aldolase; 98.8 4E-07 8.6E-12 100.5 20.1 294 401-816 1-300 (333)
189 PLN02651 cysteine desulfurase 98.8 3.9E-07 8.6E-12 102.1 20.1 260 413-768 8-276 (364)
190 PRK13479 2-aminoethylphosphona 98.8 1.1E-06 2.5E-11 98.2 23.5 169 630-816 141-325 (368)
191 TIGR02080 O_succ_thio_ly O-suc 98.8 2.2E-07 4.8E-12 105.0 17.9 236 439-793 47-305 (382)
192 PRK15481 transcriptional regul 98.8 2.4E-06 5.2E-11 98.1 26.6 185 602-816 202-390 (431)
193 PRK15407 lipopolysaccharide bi 98.7 8.8E-07 1.9E-11 101.9 22.5 280 422-815 47-372 (438)
194 PLN02509 cystathionine beta-ly 98.7 3.4E-07 7.4E-12 105.7 18.6 145 619-791 217-384 (464)
195 PRK08361 aspartate aminotransf 98.7 1.4E-06 3E-11 98.6 23.2 178 620-816 167-351 (391)
196 TIGR03537 DapC succinyldiamino 98.7 3.6E-06 7.8E-11 93.8 26.2 307 401-816 2-314 (350)
197 PRK08045 cystathionine gamma-s 98.7 3.3E-07 7.2E-12 103.8 17.8 235 440-793 49-306 (386)
198 PRK07269 cystathionine gamma-s 98.7 3.6E-07 7.8E-12 102.7 17.9 231 440-792 51-288 (364)
199 PRK09082 methionine aminotrans 98.7 1.6E-06 3.5E-11 98.0 23.1 287 400-793 31-328 (386)
200 PRK07504 O-succinylhomoserine 98.7 2.5E-07 5.4E-12 105.2 16.4 147 619-793 150-319 (398)
201 PRK07049 methionine gamma-lyas 98.7 4.5E-07 9.7E-12 104.0 18.6 241 440-793 80-350 (427)
202 PRK07812 O-acetylhomoserine am 98.7 5.1E-07 1.1E-11 103.7 19.0 74 619-704 155-231 (436)
203 TIGR01437 selA_rel uncharacter 98.7 1.5E-06 3.3E-11 97.6 22.5 71 400-481 9-80 (363)
204 PRK05968 hypothetical protein; 98.7 2.6E-07 5.7E-12 104.7 16.4 147 621-793 149-311 (389)
205 PLN00175 aminotransferase fami 98.7 3.1E-06 6.6E-11 96.8 25.2 305 400-815 55-370 (413)
206 TIGR01979 sufS cysteine desulf 98.7 5E-06 1.1E-10 94.2 26.7 173 619-815 159-353 (403)
207 PRK06207 aspartate aminotransf 98.7 4.3E-06 9.4E-11 95.2 25.9 315 397-816 37-363 (405)
208 PRK08247 cystathionine gamma-s 98.7 5.3E-07 1.1E-11 101.4 18.1 233 440-792 49-288 (366)
209 PRK08912 hypothetical protein; 98.7 5.3E-06 1.1E-10 93.7 24.9 176 621-816 162-345 (387)
210 PRK08776 cystathionine gamma-s 98.7 1.1E-06 2.3E-11 100.2 19.4 148 619-793 145-314 (405)
211 PRK07568 aspartate aminotransf 98.6 8.3E-06 1.8E-10 92.3 26.4 156 620-792 163-327 (397)
212 TIGR02379 ECA_wecE TDP-4-keto- 98.6 4.5E-06 9.7E-11 94.3 24.0 221 419-745 11-252 (376)
213 PRK02948 cysteine desulfurase; 98.6 1.6E-06 3.4E-11 97.7 20.3 262 400-767 2-273 (381)
214 PRK14012 cysteine desulfurase; 98.6 2.6E-06 5.7E-11 96.9 22.3 209 400-708 5-223 (404)
215 PRK08068 transaminase; Reviewe 98.6 8.1E-06 1.7E-10 92.4 25.5 173 621-816 170-350 (389)
216 PRK07050 cystathionine beta-ly 98.6 1E-06 2.2E-11 100.1 17.7 250 440-810 62-333 (394)
217 TIGR00474 selA seryl-tRNA(sec) 98.6 3.6E-06 7.9E-11 97.0 22.0 222 418-743 94-334 (454)
218 PRK07309 aromatic amino acid a 98.6 1.5E-05 3.2E-10 90.4 26.6 243 400-741 31-283 (391)
219 PRK07582 cystathionine gamma-l 98.6 1.3E-06 2.8E-11 98.3 17.8 145 619-792 132-300 (366)
220 PRK06348 aspartate aminotransf 98.6 1.5E-05 3.2E-10 90.1 26.4 173 622-815 166-345 (384)
221 PRK08056 threonine-phosphate d 98.6 1.2E-05 2.6E-10 89.9 25.3 168 622-816 146-317 (356)
222 PRK03321 putative aminotransfe 98.6 2.1E-06 4.6E-11 95.6 19.1 166 621-816 147-319 (352)
223 PRK12414 putative aminotransfe 98.6 7.8E-06 1.7E-10 92.4 23.9 241 400-740 30-280 (384)
224 cd00615 Orn_deC_like Ornithine 98.6 3.5E-07 7.6E-12 99.6 12.3 125 602-745 143-272 (294)
225 PRK05957 aspartate aminotransf 98.6 1.2E-05 2.6E-10 91.1 25.0 175 620-816 161-345 (389)
226 PRK11658 UDP-4-amino-4-deoxy-L 98.6 4.3E-06 9.4E-11 94.5 21.4 234 419-766 14-270 (379)
227 PRK07681 aspartate aminotransf 98.6 1.7E-05 3.7E-10 90.1 26.0 172 620-815 167-348 (399)
228 PRK06176 cystathionine gamma-s 98.6 1.4E-06 3E-11 98.5 16.9 82 619-711 134-219 (380)
229 PRK08248 O-acetylhomoserine am 98.5 2.9E-06 6.3E-11 97.5 18.8 162 440-704 61-225 (431)
230 PLN02656 tyrosine transaminase 98.5 3.3E-05 7.2E-10 88.1 27.3 182 618-816 169-366 (409)
231 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.5 6E-06 1.3E-10 93.1 21.0 275 420-816 12-315 (375)
232 PRK08861 cystathionine gamma-s 98.5 2.2E-06 4.8E-11 97.1 17.3 235 440-793 50-307 (388)
233 TIGR01969 minD_arch cell divis 98.5 2.5E-06 5.5E-11 90.1 16.6 103 193-317 94-201 (251)
234 PRK14807 histidinol-phosphate 98.5 1E-05 2.2E-10 90.3 22.2 275 418-816 37-315 (351)
235 cd06450 DOPA_deC_like DOPA dec 98.5 5.8E-06 1.3E-10 91.4 20.1 68 621-694 151-221 (345)
236 PLN02409 serine--glyoxylate am 98.5 6.3E-06 1.4E-10 93.8 20.8 150 602-768 124-290 (401)
237 PRK14809 histidinol-phosphate 98.5 1.4E-05 3E-10 89.3 23.0 160 622-816 158-321 (357)
238 PRK09105 putative aminotransfe 98.5 1.3E-05 2.8E-10 90.3 22.6 288 400-816 44-335 (370)
239 PRK04311 selenocysteine syntha 98.5 1.5E-05 3.3E-10 92.2 23.4 221 418-743 99-339 (464)
240 PLN02855 Bifunctional selenocy 98.5 2.8E-05 6E-10 89.1 25.6 267 400-766 34-324 (424)
241 PRK07671 cystathionine beta-ly 98.5 4E-06 8.7E-11 94.7 18.4 146 619-791 134-301 (377)
242 PTZ00094 serine hydroxymethylt 98.5 8.1E-06 1.7E-10 94.5 21.2 123 632-766 192-318 (452)
243 PLN03026 histidinol-phosphate 98.5 1.4E-05 3.1E-10 90.3 22.5 167 620-816 176-346 (380)
244 PRK06358 threonine-phosphate d 98.5 4.1E-05 8.8E-10 85.7 25.7 167 622-816 145-317 (354)
245 TIGR01007 eps_fam capsular exo 98.5 2.7E-06 5.9E-11 87.6 15.0 77 195-290 115-191 (204)
246 PRK05942 aspartate aminotransf 98.5 2.8E-05 6.1E-10 88.1 24.7 175 619-816 170-353 (394)
247 PRK08363 alanine aminotransfer 98.5 2.8E-05 6E-10 88.3 24.6 180 621-816 169-355 (398)
248 PRK09028 cystathionine beta-ly 98.5 3.4E-06 7.4E-11 95.7 17.0 160 619-809 146-326 (394)
249 PRK07683 aminotransferase A; V 98.5 5.1E-05 1.1E-09 85.9 26.5 87 622-712 165-256 (387)
250 TIGR03540 DapC_direct LL-diami 98.5 3E-05 6.5E-10 87.4 24.6 173 620-815 165-346 (383)
251 PRK05967 cystathionine beta-ly 98.5 5.1E-06 1.1E-10 94.2 18.2 252 440-810 61-333 (395)
252 PRK01533 histidinol-phosphate 98.5 1.3E-05 2.9E-10 90.1 21.5 290 400-816 30-324 (366)
253 TIGR03539 DapC_actino succinyl 98.5 2.6E-05 5.6E-10 87.3 23.5 173 619-816 142-323 (357)
254 PRK09148 aminotransferase; Val 98.5 5.6E-05 1.2E-09 86.2 26.5 177 620-815 167-350 (405)
255 PRK06702 O-acetylhomoserine am 98.5 6.7E-06 1.5E-10 94.3 18.9 247 442-793 60-348 (432)
256 PRK08175 aminotransferase; Val 98.5 3.8E-05 8.2E-10 87.1 24.9 190 602-815 152-349 (395)
257 TIGR03588 PseC UDP-4-keto-6-de 98.4 4.7E-05 1E-09 85.9 25.4 221 419-743 10-257 (380)
258 PRK09276 LL-diaminopimelate am 98.4 2.9E-05 6.2E-10 87.7 23.7 173 620-815 167-348 (385)
259 PRK09265 aminotransferase AlaT 98.4 6.9E-05 1.5E-09 85.3 26.6 178 621-816 171-362 (404)
260 PF00266 Aminotran_5: Aminotra 98.4 1.1E-05 2.5E-10 90.4 19.7 299 412-815 7-333 (371)
261 PRK13355 bifunctional HTH-doma 98.4 4.5E-05 9.8E-10 89.8 25.4 314 400-816 147-475 (517)
262 PTZ00433 tyrosine aminotransfe 98.4 7.2E-05 1.6E-09 85.4 26.3 178 622-816 181-371 (412)
263 PRK04366 glycine dehydrogenase 98.4 3.8E-05 8.3E-10 89.6 24.4 297 418-817 83-409 (481)
264 PRK08114 cystathionine beta-ly 98.4 6.1E-06 1.3E-10 93.5 17.2 236 440-793 59-317 (395)
265 PF01041 DegT_DnrJ_EryC1: DegT 98.4 1.4E-05 3.1E-10 89.6 19.9 276 419-815 5-304 (363)
266 CHL00175 minD septum-site dete 98.4 4.5E-06 9.7E-11 90.3 15.2 88 221-317 127-223 (281)
267 PRK07337 aminotransferase; Val 98.4 5.8E-05 1.3E-09 85.3 24.7 179 619-815 164-348 (388)
268 PRK09147 succinyldiaminopimela 98.4 6.8E-05 1.5E-09 85.1 25.1 304 400-815 30-350 (396)
269 PRK08134 O-acetylhomoserine am 98.4 1.1E-05 2.4E-10 92.7 18.5 161 440-703 61-224 (433)
270 PRK07865 N-succinyldiaminopime 98.4 6E-05 1.3E-09 84.5 24.0 173 619-816 148-329 (364)
271 PRK05939 hypothetical protein; 98.4 9.2E-06 2E-10 92.4 17.5 161 440-704 44-207 (397)
272 PRK07392 threonine-phosphate d 98.4 3E-05 6.5E-10 86.8 21.3 166 620-816 150-321 (360)
273 cd02037 MRP-like MRP (Multiple 98.4 2E-05 4.4E-10 78.6 17.8 87 220-314 67-169 (169)
274 TIGR03403 nifS_epsilon cystein 98.4 0.0001 2.2E-09 83.1 25.6 135 620-776 141-280 (382)
275 COG1104 NifS Cysteine sulfinat 98.4 3.4E-05 7.5E-10 85.9 21.0 260 400-768 3-277 (386)
276 TIGR01264 tyr_amTase_E tyrosin 98.4 0.00022 4.7E-09 81.1 28.2 178 621-816 170-362 (401)
277 PRK05613 O-acetylhomoserine am 98.4 1.6E-05 3.4E-10 91.5 18.9 162 440-703 66-230 (437)
278 PF01053 Cys_Met_Meta_PP: Cys/ 98.4 8.3E-06 1.8E-10 92.2 16.3 249 439-810 51-323 (386)
279 PRK08636 aspartate aminotransf 98.4 0.00011 2.3E-09 83.8 25.5 314 400-815 34-360 (403)
280 TIGR01329 cysta_beta_ly_E cyst 98.4 7.5E-06 1.6E-10 92.6 15.8 146 619-791 131-298 (378)
281 PRK05387 histidinol-phosphate 98.3 3.5E-05 7.6E-10 85.7 20.7 166 621-816 147-317 (353)
282 PRK06107 aspartate aminotransf 98.3 0.00011 2.3E-09 83.7 24.6 244 400-741 34-287 (402)
283 PRK07366 succinyldiaminopimela 98.3 8.8E-05 1.9E-09 83.8 23.6 175 622-816 169-351 (388)
284 TIGR01968 minD_bact septum sit 98.3 1.2E-05 2.7E-10 85.3 15.4 102 193-316 97-207 (261)
285 PLN00143 tyrosine/nicotianamin 98.3 0.00026 5.7E-09 80.8 27.1 199 418-704 51-257 (409)
286 cd00617 Tnase_like Tryptophana 98.3 2.6E-05 5.6E-10 89.5 18.8 58 602-664 139-196 (431)
287 PLN00145 tyrosine/nicotianamin 98.3 0.00042 9.1E-09 79.8 28.7 216 400-703 53-276 (430)
288 PRK08354 putative aminotransfe 98.3 0.0001 2.2E-09 80.9 22.5 184 400-703 9-196 (311)
289 PRK05664 threonine-phosphate d 98.3 4.9E-05 1.1E-09 84.2 20.0 164 621-816 127-294 (330)
290 PRK08064 cystathionine beta-ly 98.3 1.5E-05 3.2E-10 90.6 16.1 154 619-793 138-307 (390)
291 TIGR03538 DapC_gpp succinyldia 98.3 0.00026 5.7E-09 80.2 26.2 171 620-816 166-350 (393)
292 PRK06290 aspartate aminotransf 98.3 0.00027 5.8E-09 80.9 26.2 179 619-815 179-365 (410)
293 COG0436 Aspartate/tyrosine/aro 98.3 0.00017 3.7E-09 82.0 24.1 288 418-813 43-347 (393)
294 TIGR01265 tyr_nico_aTase tyros 98.3 0.00019 4.1E-09 81.7 24.6 178 621-815 172-363 (403)
295 PLN02187 rooty/superroot1 98.3 0.00021 4.5E-09 83.1 25.1 185 618-816 204-401 (462)
296 COG1149 MinD superfamily P-loo 98.2 1.3E-05 2.9E-10 84.5 13.3 124 172-317 127-253 (284)
297 PRK06434 cystathionine gamma-l 98.2 2.5E-05 5.5E-10 88.4 16.6 147 618-793 147-309 (384)
298 PRK04870 histidinol-phosphate 98.2 8.1E-05 1.8E-09 83.1 20.5 289 400-816 27-320 (356)
299 COG0075 Serine-pyruvate aminot 98.2 4.3E-05 9.3E-10 85.5 17.8 249 418-768 17-282 (383)
300 COG2008 GLY1 Threonine aldolas 98.2 4.1E-05 9E-10 83.6 17.1 199 418-712 13-221 (342)
301 PRK04781 histidinol-phosphate 98.2 6.1E-05 1.3E-09 84.6 19.2 169 620-816 153-326 (364)
302 TIGR02618 tyr_phenol_ly tyrosi 98.2 2.6E-05 5.6E-10 88.8 15.9 167 602-785 157-341 (450)
303 PRK13580 serine hydroxymethylt 98.2 7.2E-06 1.6E-10 94.5 11.5 114 643-765 237-357 (493)
304 PLN02376 1-aminocyclopropane-1 98.2 0.00034 7.3E-09 82.0 25.5 179 619-815 199-397 (496)
305 PRK05166 histidinol-phosphate 98.2 0.00012 2.5E-09 82.5 21.0 165 622-816 163-335 (371)
306 PRK06425 histidinol-phosphate 98.2 7.3E-05 1.6E-09 82.8 19.0 166 621-816 125-295 (332)
307 PRK02610 histidinol-phosphate 98.2 0.00028 6E-09 79.6 23.9 170 618-816 167-340 (374)
308 COG2873 MET17 O-acetylhomoseri 98.2 4.5E-05 9.7E-10 83.3 16.3 169 440-711 59-230 (426)
309 PRK06855 aminotransferase; Val 98.2 0.00073 1.6E-08 77.9 27.3 278 418-793 50-345 (433)
310 PRK14808 histidinol-phosphate 98.2 0.00016 3.5E-09 80.4 21.1 162 621-816 141-306 (335)
311 PRK01688 histidinol-phosphate 98.2 4.5E-05 9.7E-10 85.2 16.2 167 621-816 148-319 (351)
312 PRK12566 glycine dehydrogenase 98.1 0.00021 4.5E-09 87.7 22.6 278 442-817 542-839 (954)
313 PRK05367 glycine dehydrogenase 98.1 0.00025 5.4E-09 88.5 23.6 181 443-713 542-731 (954)
314 PRK13237 tyrosine phenol-lyase 98.1 5.7E-05 1.2E-09 86.4 16.1 167 602-786 164-349 (460)
315 TIGR00461 gcvP glycine dehydro 98.1 0.00033 7.1E-09 86.4 23.3 280 443-817 530-830 (939)
316 PRK06959 putative threonine-ph 98.1 0.00021 4.5E-09 79.6 20.0 163 621-816 133-299 (339)
317 cd02033 BchX Chlorophyllide re 98.1 2.7E-05 5.9E-10 86.0 12.7 92 220-317 147-245 (329)
318 COG0079 HisC Histidinol-phosph 98.1 0.00049 1.1E-08 77.2 22.9 289 400-816 23-317 (356)
319 PLN02414 glycine dehydrogenase 98.1 0.00043 9.4E-09 86.3 24.2 280 443-817 568-870 (993)
320 COG1168 MalY Bifunctional PLP- 98.1 0.00032 6.9E-09 77.2 20.4 169 601-793 147-328 (388)
321 PLN02607 1-aminocyclopropane-1 98.1 0.0008 1.7E-08 77.9 24.7 182 617-816 198-397 (447)
322 KOG1368 Threonine aldolase [Am 98.1 0.00012 2.6E-09 77.7 15.9 245 418-762 35-290 (384)
323 PRK05839 hypothetical protein; 98.1 0.00094 2E-08 75.3 24.6 88 621-712 158-255 (374)
324 PF01212 Beta_elim_lyase: Beta 98.1 3.5E-05 7.6E-10 83.9 12.5 196 418-709 8-213 (290)
325 cd02036 MinD Bacterial cell di 98.1 3.6E-05 7.8E-10 76.8 11.7 85 222-315 64-155 (179)
326 TIGR03531 selenium_SpcS O-phos 98.0 0.00063 1.4E-08 78.3 22.3 255 442-793 104-368 (444)
327 PRK07908 hypothetical protein; 98.0 0.00073 1.6E-08 75.3 21.8 162 622-816 143-309 (349)
328 PLN02450 1-aminocyclopropane-1 98.0 0.0021 4.5E-08 74.9 25.6 181 619-816 191-390 (468)
329 COG1167 ARO8 Transcriptional r 97.9 0.0027 5.9E-08 73.8 26.3 307 400-816 90-412 (459)
330 PLN02672 methionine S-methyltr 97.9 0.00098 2.1E-08 83.5 23.4 228 388-712 690-934 (1082)
331 TIGR03029 EpsG chain length de 97.9 0.00047 1E-08 74.4 18.3 62 221-288 213-274 (274)
332 PRK06836 aspartate aminotransf 97.9 0.0026 5.6E-08 72.2 25.2 86 620-709 169-264 (394)
333 PRK03967 histidinol-phosphate 97.9 0.0007 1.5E-08 75.2 20.1 102 621-741 143-248 (337)
334 COG0489 Mrp ATPases involved i 97.9 0.00028 6E-09 76.0 16.2 87 220-315 166-260 (265)
335 PTZ00377 alanine aminotransfer 97.9 0.0013 2.8E-08 76.8 22.9 112 619-741 218-348 (481)
336 TIGR02617 tnaA_trp_ase tryptop 97.9 0.00084 1.8E-08 76.3 19.4 56 602-662 170-225 (467)
337 PRK02769 histidine decarboxyla 97.9 0.0014 3.1E-08 74.2 21.4 153 602-768 148-309 (380)
338 PF01656 CbiA: CobQ/CobB/MinD/ 97.9 0.00014 3E-09 73.5 12.0 68 221-295 95-164 (195)
339 PRK11670 antiporter inner memb 97.8 0.00094 2E-08 75.3 19.6 90 220-317 215-320 (369)
340 TIGR02016 BchX chlorophyllide 97.8 0.00029 6.3E-09 77.1 15.0 92 220-317 122-220 (296)
341 TIGR03018 pepcterm_TyrKin exop 97.8 0.00044 9.5E-09 71.6 15.4 72 195-287 134-207 (207)
342 PRK00451 glycine dehydrogenase 97.8 0.0015 3.2E-08 75.5 21.3 79 619-711 204-290 (447)
343 TIGR03542 DAPAT_plant LL-diami 97.8 0.0024 5.3E-08 72.6 22.6 84 621-708 176-265 (402)
344 PTZ00376 aspartate aminotransf 97.8 0.001 2.2E-08 75.9 19.3 128 602-740 164-303 (404)
345 PRK07590 L,L-diaminopimelate a 97.8 0.0078 1.7E-07 68.7 26.2 85 622-710 180-270 (409)
346 PRK09257 aromatic amino acid a 97.8 0.0022 4.8E-08 72.8 21.5 71 630-702 182-259 (396)
347 TIGR03815 CpaE_hom_Actino heli 97.7 0.0032 6.9E-08 69.6 21.2 102 192-316 189-293 (322)
348 PRK04635 histidinol-phosphate 97.7 0.00051 1.1E-08 76.8 14.7 165 622-816 151-319 (354)
349 PLN02368 alanine transaminase 97.7 0.005 1.1E-07 70.5 22.6 157 621-789 213-392 (407)
350 COG0399 WecE Predicted pyridox 97.7 0.0051 1.1E-07 69.1 21.9 234 419-765 15-263 (374)
351 COG0520 csdA Selenocysteine ly 97.7 0.017 3.7E-07 66.0 26.5 292 400-794 24-343 (405)
352 PRK00771 signal recognition pa 97.7 0.0047 1E-07 71.0 21.6 49 24-78 82-130 (437)
353 COG3640 CooC CO dehydrogenase 97.7 0.0016 3.4E-08 67.8 15.9 94 220-321 133-228 (255)
354 cd03110 Fer4_NifH_child This p 97.6 0.0024 5.2E-08 64.2 17.0 85 219-311 91-179 (179)
355 PRK10867 signal recognition pa 97.6 0.003 6.5E-08 72.5 19.5 83 220-310 183-273 (433)
356 PRK09440 avtA valine--pyruvate 97.6 0.0082 1.8E-07 68.6 23.2 176 621-816 182-365 (416)
357 cd00550 ArsA_ATPase Oxyanion-t 97.6 0.00088 1.9E-08 71.7 14.2 64 252-315 162-241 (254)
358 PLN03032 serine decarboxylase; 97.6 0.0055 1.2E-07 69.2 20.7 234 442-767 65-311 (374)
359 PRK11519 tyrosine kinase; Prov 97.6 0.0011 2.4E-08 81.2 16.1 63 221-289 636-698 (719)
360 COG1103 Archaea-specific pyrid 97.6 0.0052 1.1E-07 64.8 18.5 201 442-735 60-268 (382)
361 PRK09841 cryptic autophosphory 97.6 0.0015 3.3E-08 80.0 17.3 64 221-290 641-704 (726)
362 KOG0053 Cystathionine beta-lya 97.6 0.0015 3.2E-08 73.4 15.2 194 441-742 75-272 (409)
363 PRK14494 putative molybdopteri 97.6 0.00036 7.8E-09 73.3 9.8 53 37-95 1-54 (229)
364 TIGR00959 ffh signal recogniti 97.5 0.0042 9E-08 71.3 19.1 83 220-310 182-272 (428)
365 cd02117 NifH_like This family 97.5 0.0015 3.2E-08 67.9 13.7 90 220-313 116-212 (212)
366 PLN02231 alanine transaminase 97.5 0.011 2.3E-07 70.2 22.2 105 602-712 256-378 (534)
367 COG2894 MinD Septum formation 97.5 0.00094 2E-08 68.6 10.8 199 37-316 2-216 (272)
368 PRK08637 hypothetical protein; 97.4 0.033 7.2E-07 63.1 24.6 178 622-816 150-352 (388)
369 PRK13185 chlL protochlorophyll 97.4 0.0024 5.3E-08 68.6 14.5 90 220-317 117-212 (270)
370 TIGR03799 NOD_PanD_pyr putativ 97.4 0.012 2.6E-07 69.4 21.2 140 619-765 265-414 (522)
371 TIGR01788 Glu-decarb-GAD gluta 97.4 0.038 8.2E-07 63.8 24.7 90 602-706 177-277 (431)
372 PLN02271 serine hydroxymethylt 97.4 0.0019 4.1E-08 75.5 14.0 150 619-784 298-476 (586)
373 KOG2862 Alanine-glyoxylate ami 97.3 0.0037 8E-08 67.1 14.0 151 601-769 131-300 (385)
374 COG1348 NifH Nitrogenase subun 97.3 0.004 8.7E-08 64.6 13.8 99 221-328 118-233 (278)
375 PLN02880 tyrosine decarboxylas 97.3 0.014 3E-07 68.5 20.1 96 602-705 224-322 (490)
376 TIGR01281 DPOR_bchL light-inde 97.3 0.0029 6.3E-08 67.9 13.2 88 220-315 115-208 (268)
377 PF01276 OKR_DC_1: Orn/Lys/Arg 97.3 0.0018 4E-08 73.6 12.1 228 442-761 65-312 (417)
378 CHL00072 chlL photochlorophyll 97.3 0.0021 4.6E-08 70.1 12.2 90 220-317 115-210 (290)
379 COG0626 MetC Cystathionine bet 97.3 0.0071 1.5E-07 68.4 16.4 235 441-794 61-320 (396)
380 COG0455 flhG Antiactivator of 97.3 0.0074 1.6E-07 64.9 15.7 102 192-314 97-206 (262)
381 cd02032 Bchl_like This family 97.3 0.0038 8.2E-08 67.0 13.6 90 220-317 115-210 (267)
382 KOG1549 Cysteine desulfurase N 97.2 0.026 5.6E-07 63.8 20.2 207 400-705 45-257 (428)
383 TIGR00064 ftsY signal recognit 97.2 0.016 3.5E-07 62.7 18.0 37 36-78 71-107 (272)
384 TIGR01005 eps_transp_fam exopo 97.2 0.0063 1.4E-07 75.1 16.3 64 221-290 656-719 (754)
385 PRK15399 lysine decarboxylase 97.2 0.038 8.3E-07 66.9 22.3 163 442-693 194-371 (713)
386 PRK13232 nifH nitrogenase redu 97.2 0.0053 1.1E-07 66.2 13.9 91 220-316 116-214 (273)
387 cd02040 NifH NifH gene encodes 97.2 0.0074 1.6E-07 64.6 14.9 36 37-78 1-36 (270)
388 KOG3022 Predicted ATPase, nucl 97.2 0.01 2.2E-07 63.2 14.9 92 220-317 156-262 (300)
389 PRK11889 flhF flagellar biosyn 97.1 0.0092 2E-07 67.2 15.0 37 36-78 240-276 (436)
390 cd02035 ArsA ArsA ATPase funct 97.1 0.0053 1.2E-07 64.0 12.3 63 221-289 114-180 (217)
391 KOG0257 Kynurenine aminotransf 97.0 0.045 9.8E-07 61.3 18.7 207 418-711 46-267 (420)
392 COG0541 Ffh Signal recognition 96.9 0.074 1.6E-06 60.2 20.1 81 220-308 182-270 (451)
393 TIGR03371 cellulose_yhjQ cellu 96.9 0.016 3.5E-07 61.0 14.4 37 37-78 1-37 (246)
394 PRK15029 arginine decarboxylas 96.9 0.018 3.9E-07 70.3 16.2 153 442-674 204-361 (755)
395 TIGR01425 SRP54_euk signal rec 96.9 0.043 9.3E-07 62.9 18.3 85 220-312 182-274 (429)
396 TIGR01366 serC_3 phosphoserine 96.9 0.066 1.4E-06 60.3 19.6 121 631-768 139-278 (361)
397 cd03115 SRP The signal recogni 96.9 0.061 1.3E-06 53.7 17.3 33 40-78 3-35 (173)
398 PRK10416 signal recognition pa 96.9 0.059 1.3E-06 59.7 18.6 37 36-78 113-149 (318)
399 cd02038 FleN-like FleN is a me 96.8 0.015 3.2E-07 56.3 12.1 84 221-311 45-139 (139)
400 COG1003 GcvP Glycine cleavage 96.8 0.12 2.6E-06 58.2 20.3 276 443-817 109-408 (496)
401 PHA02518 ParA-like protein; Pr 96.8 0.036 7.8E-07 56.8 15.6 36 38-78 1-36 (211)
402 KOG0259 Tyrosine aminotransfer 96.8 0.021 4.5E-07 63.1 13.9 54 601-664 189-242 (447)
403 PRK14974 cell division protein 96.8 0.022 4.8E-07 63.4 14.5 36 37-78 140-175 (336)
404 PRK13230 nitrogenase reductase 96.8 0.021 4.5E-07 61.8 14.1 36 37-78 1-36 (279)
405 TIGR01287 nifH nitrogenase iro 96.7 0.026 5.6E-07 60.9 14.2 35 38-78 1-35 (275)
406 PRK14495 putative molybdopteri 96.7 0.0044 9.6E-08 70.4 8.3 37 37-79 1-37 (452)
407 PRK03080 phosphoserine aminotr 96.7 0.053 1.1E-06 61.4 17.1 122 632-767 148-288 (378)
408 COG1921 SelA Selenocysteine sy 96.7 0.087 1.9E-06 59.2 18.1 95 643-747 176-273 (395)
409 PRK10818 cell division inhibit 96.6 0.08 1.7E-06 56.8 17.2 37 37-78 2-38 (270)
410 TIGR00176 mobB molybdopterin-g 96.6 0.005 1.1E-07 61.0 7.0 38 40-83 2-39 (155)
411 PLN02590 probable tyrosine dec 96.6 0.33 7.2E-06 57.6 23.2 97 602-706 272-371 (539)
412 cd03116 MobB Molybdenum is an 96.6 0.014 2.9E-07 58.2 10.1 41 37-83 1-41 (159)
413 TIGR01364 serC_1 phosphoserine 96.6 0.13 2.8E-06 57.7 19.1 164 618-815 132-310 (349)
414 PRK13231 nitrogenase reductase 96.6 0.031 6.8E-07 59.9 13.6 94 220-317 113-209 (264)
415 PRK12726 flagellar biosynthesi 96.5 0.057 1.2E-06 60.8 15.5 37 36-78 205-241 (407)
416 PRK13233 nifH nitrogenase redu 96.5 0.035 7.5E-07 59.9 13.6 36 37-78 2-38 (275)
417 PRK05703 flhF flagellar biosyn 96.5 0.03 6.5E-07 64.4 13.7 38 37-78 221-258 (424)
418 COG1703 ArgK Putative periplas 96.5 0.12 2.5E-06 56.1 16.9 55 8-78 29-86 (323)
419 PRK13236 nitrogenase reductase 96.5 0.039 8.6E-07 60.4 13.9 37 36-78 5-41 (296)
420 PRK12727 flagellar biosynthesi 96.5 0.085 1.8E-06 61.8 16.9 40 35-78 348-387 (559)
421 PRK13849 putative crown gall t 96.5 0.091 2E-06 55.5 15.9 37 37-78 1-37 (231)
422 COG0076 GadB Glutamate decarbo 96.5 0.19 4.1E-06 58.5 19.7 69 632-706 219-292 (460)
423 PRK14493 putative bifunctional 96.4 0.016 3.6E-07 62.7 10.3 36 37-79 1-36 (274)
424 cd00611 PSAT_like Phosphoserin 96.4 0.16 3.4E-06 57.0 18.6 153 648-816 157-319 (355)
425 PRK05355 3-phosphoserine/phosp 96.4 0.14 3.1E-06 57.7 18.1 165 618-816 143-321 (360)
426 cd03113 CTGs CTP synthetase (C 96.3 0.032 6.9E-07 58.8 11.2 106 195-313 118-238 (255)
427 PRK12723 flagellar biosynthesi 96.3 0.099 2.2E-06 59.4 15.6 83 220-310 254-345 (388)
428 PF07015 VirC1: VirC1 protein; 96.3 0.14 3E-06 53.8 15.5 37 37-78 1-37 (231)
429 PRK09435 membrane ATPase/prote 96.2 0.28 6E-06 54.7 18.4 50 13-78 42-91 (332)
430 PRK13235 nifH nitrogenase redu 96.2 0.071 1.5E-06 57.5 13.5 36 37-78 1-36 (274)
431 PF00142 Fer4_NifH: 4Fe-4S iro 96.2 0.0091 2E-07 63.6 6.2 112 220-340 116-246 (273)
432 TIGR03801 asp_4_decarbox aspar 96.1 0.4 8.6E-06 56.7 20.3 78 621-706 243-327 (521)
433 PLN02397 aspartate transaminas 96.1 0.088 1.9E-06 60.6 14.6 77 630-709 204-292 (423)
434 PRK13234 nifH nitrogenase redu 96.0 0.089 1.9E-06 57.6 13.5 37 36-78 3-39 (295)
435 PF07755 DUF1611: Protein of u 96.0 0.015 3.3E-07 63.3 7.2 38 36-78 111-148 (301)
436 TIGR00750 lao LAO/AO transport 96.0 0.31 6.8E-06 53.5 17.5 36 37-78 34-69 (300)
437 COG0112 GlyA Glycine/serine hy 96.0 0.11 2.5E-06 57.9 13.6 124 637-771 177-308 (413)
438 PLN02263 serine decarboxylase 95.9 0.84 1.8E-05 53.2 21.0 180 442-711 132-322 (470)
439 PRK09275 aspartate aminotransf 95.8 0.22 4.7E-06 58.9 16.4 78 621-706 244-328 (527)
440 PRK12724 flagellar biosynthesi 95.8 0.19 4.1E-06 57.4 15.1 36 38-78 224-259 (432)
441 PRK15400 lysine decarboxylase 95.8 0.15 3.2E-06 62.0 14.8 146 442-672 194-342 (714)
442 PF00282 Pyridoxal_deC: Pyrido 95.7 0.38 8.3E-06 54.5 17.3 83 619-706 193-278 (373)
443 PF00448 SRP54: SRP54-type pro 95.7 0.15 3.2E-06 52.6 12.7 35 38-78 2-36 (196)
444 PF03308 ArgK: ArgK protein; 95.6 0.085 1.8E-06 56.3 10.7 52 11-78 13-64 (266)
445 PRK14489 putative bifunctional 95.6 0.035 7.6E-07 62.7 8.1 38 36-79 204-241 (366)
446 PLN02452 phosphoserine transam 95.5 0.89 1.9E-05 51.4 18.9 147 655-816 171-326 (365)
447 PRK06731 flhF flagellar biosyn 95.4 0.45 9.8E-06 51.5 15.7 37 36-78 74-110 (270)
448 PF00464 SHMT: Serine hydroxym 95.4 0.14 3.1E-06 58.2 12.2 142 602-768 159-321 (399)
449 PRK14491 putative bifunctional 95.4 0.056 1.2E-06 64.8 9.4 39 35-79 8-46 (597)
450 PRK14723 flhF flagellar biosyn 95.3 0.3 6.5E-06 59.7 15.3 84 220-311 263-357 (767)
451 KOG0780 Signal recognition par 95.2 0.61 1.3E-05 52.1 15.9 67 220-289 183-250 (483)
452 PF06564 YhjQ: YhjQ protein; 95.2 0.021 4.6E-07 60.5 4.4 37 37-78 1-37 (243)
453 COG3367 Uncharacterized conser 95.0 0.4 8.8E-06 52.4 13.4 37 37-78 148-184 (339)
454 PF10662 PduV-EutP: Ethanolami 94.9 0.51 1.1E-05 46.2 12.8 62 240-302 79-142 (143)
455 PF03205 MobB: Molybdopterin g 94.9 0.029 6.3E-07 54.6 4.3 39 38-82 1-39 (140)
456 PRK13578 ornithine decarboxyla 94.8 0.17 3.7E-06 61.5 11.3 171 442-693 173-359 (720)
457 COG1763 MobB Molybdopterin-gua 94.6 0.04 8.7E-07 54.9 4.4 39 36-80 1-39 (161)
458 TIGR03499 FlhF flagellar biosy 94.5 0.18 3.9E-06 54.9 9.7 37 36-78 193-231 (282)
459 COG0552 FtsY Signal recognitio 94.4 0.6 1.3E-05 51.5 13.1 36 37-78 139-174 (340)
460 PLN02724 Molybdenum cofactor s 94.3 3.2 7E-05 51.9 21.3 164 619-794 192-394 (805)
461 COG2403 Predicted GTPase [Gene 94.2 0.046 9.9E-07 60.4 4.1 39 35-78 124-162 (449)
462 PRK13886 conjugal transfer pro 94.2 1.3 2.8E-05 47.2 14.8 37 37-78 2-38 (241)
463 cd01983 Fer4_NifH The Fer4_Nif 94.0 0.069 1.5E-06 46.7 4.3 33 40-78 2-34 (99)
464 PRK05636 replicative DNA helic 93.9 0.48 1E-05 55.8 12.1 39 36-78 263-301 (505)
465 KOG0256 1-aminocyclopropane-1- 93.8 2.7 5.9E-05 47.4 16.9 181 617-813 224-417 (471)
466 KOG0634 Aromatic amino acid am 93.8 6.4 0.00014 44.8 19.7 205 602-816 185-421 (472)
467 PRK05367 glycine dehydrogenase 93.5 4.2 9.1E-05 51.7 20.0 79 619-712 206-293 (954)
468 KOG2040 Glycine dehydrogenase 93.5 2.5 5.5E-05 49.9 16.4 275 443-816 582-880 (1001)
469 PRK05595 replicative DNA helic 93.4 0.57 1.2E-05 54.4 11.5 39 36-78 199-237 (444)
470 cd03114 ArgK-like The function 93.3 0.51 1.1E-05 46.3 9.5 33 40-78 2-34 (148)
471 PHA02542 41 41 helicase; Provi 93.3 0.86 1.9E-05 53.3 12.8 37 37-78 189-225 (473)
472 KOG2749 mRNA cleavage and poly 93.3 0.21 4.5E-06 55.1 7.1 36 37-78 103-138 (415)
473 PRK14722 flhF flagellar biosyn 93.3 2.2 4.7E-05 48.4 15.5 38 36-78 136-174 (374)
474 PRK12462 phosphoserine aminotr 93.3 4.5 9.8E-05 45.7 18.0 152 649-816 163-325 (364)
475 PRK08760 replicative DNA helic 93.2 0.75 1.6E-05 53.9 12.1 38 37-78 228-265 (476)
476 TIGR01365 serC_2 phosphoserine 93.1 3.7 8E-05 46.6 17.1 174 620-815 131-333 (374)
477 PRK08506 replicative DNA helic 93.0 1.2 2.7E-05 52.1 13.6 37 37-78 191-227 (472)
478 TIGR00665 DnaB replicative DNA 93.0 0.98 2.1E-05 52.1 12.7 38 37-78 194-231 (434)
479 PRK08006 replicative DNA helic 92.8 0.76 1.7E-05 53.7 11.5 52 36-97 222-273 (471)
480 PRK09165 replicative DNA helic 92.7 1 2.3E-05 53.0 12.5 61 191-262 323-395 (497)
481 PRK06995 flhF flagellar biosyn 92.7 3 6.6E-05 48.8 15.9 36 37-77 256-292 (484)
482 TIGR00073 hypB hydrogenase acc 92.4 5.2 0.00011 41.2 16.0 35 37-78 22-56 (207)
483 PRK06904 replicative DNA helic 92.4 1.2 2.6E-05 52.1 12.3 52 36-97 219-270 (472)
484 COG1419 FlhF Flagellar GTP-bin 92.4 1.1 2.3E-05 50.9 11.3 80 221-310 282-371 (407)
485 TIGR03600 phage_DnaB phage rep 92.0 2 4.3E-05 49.5 13.4 39 36-78 192-230 (421)
486 PF01695 IstB_IS21: IstB-like 91.9 0.19 4.1E-06 51.0 4.4 36 37-78 47-82 (178)
487 PRK06749 replicative DNA helic 91.8 1.6 3.4E-05 50.5 12.3 50 37-97 185-234 (428)
488 PF02374 ArsA_ATPase: Anion-tr 91.1 0.24 5.3E-06 54.5 4.5 38 252-289 209-246 (305)
489 PRK05748 replicative DNA helic 91.1 2.3 4.9E-05 49.4 12.8 39 36-78 201-239 (448)
490 PLN02414 glycine dehydrogenase 91.0 14 0.00031 47.0 20.3 68 412-480 112-184 (993)
491 PF03796 DnaB_C: DnaB-like hel 90.9 1 2.2E-05 48.2 9.0 38 37-78 18-55 (259)
492 PF09140 MipZ: ATPase MipZ; I 90.6 0.84 1.8E-05 48.6 7.7 35 39-78 2-36 (261)
493 COG0378 HypB Ni2+-binding GTPa 90.5 1.7 3.6E-05 44.7 9.4 47 38-95 14-61 (202)
494 PRK10751 molybdopterin-guanine 90.4 0.36 7.8E-06 48.8 4.6 37 36-78 5-41 (173)
495 PRK08840 replicative DNA helic 90.4 2 4.3E-05 50.2 11.4 52 36-97 215-266 (464)
496 PF03841 SelA: L-seryl-tRNA se 90.4 0.36 7.9E-06 53.9 5.0 95 643-745 159-261 (367)
497 TIGR00101 ureG urease accessor 90.1 5.5 0.00012 41.1 13.3 23 39-62 3-25 (199)
498 PRK10037 cell division protein 90.0 0.39 8.5E-06 51.1 4.9 37 37-78 1-37 (250)
499 PRK13768 GTPase; Provisional 89.9 0.37 8.1E-06 51.6 4.6 36 37-78 2-37 (253)
500 PRK07004 replicative DNA helic 89.9 2.4 5.2E-05 49.5 11.5 51 37-97 212-262 (460)
No 1
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=4.5e-125 Score=1125.69 Aligned_cols=765 Identities=60% Similarity=0.974 Sum_probs=635.0
Q ss_pred ccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccc
Q 003472 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLR 103 (817)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~ 103 (817)
+..++....+|++.+.+|||||+||||||+||++|++++. ++|.+|.|+||||||+++++|+.++.+.+.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~ 88 (817)
T PLN02974 14 SSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR 88 (817)
T ss_pred cCCCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc
Confidence 3446677999999999999999999999999999999994 88999999999999998889999999876444222
Q ss_pred cCCCcccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHH
Q 003472 104 RNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLA 183 (817)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a 183 (817)
-++++++|..|..+...+ ++++....+... +.-.|+..+. .....+..|.++|.|++|+|||+|
T Consensus 89 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~g~~~------~~~~~~~~~~~~~~~~~p~SPhlA 152 (817)
T PLN02974 89 ---SESLFASNRTLFLSPPAA-KSALGGVSSMGA------HAAVNAGAEA------GVTSSALWCHTLFAWRRAVSPHLA 152 (817)
T ss_pred ---cccccccccccccccccc-cccccccccccc------cccccccccc------ccccccccccCceecCCCCCHHHH
Confidence 367899999999988777 444444444433 2222222211 111334677899999999999999
Q ss_pred HhHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh
Q 003472 184 AERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (817)
Q Consensus 184 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~ 263 (817)
++++ |..+++++|.+.++++.++..+ .++.+.+|++|||||||+++|++.+.+++||++.+++|||||++.+||+
T Consensus 153 A~~e-g~~i~~~~i~~~~~~~l~~~~~----~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~ 227 (817)
T PLN02974 153 ARRE-GRGVSDDEVLEAVNRSLREVGA----NESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGG 227 (817)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHhhhc----ccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCH
Confidence 9999 9999999999999876543100 0112348999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCCCcchhhhhhccchhhhhhHHHHHHHHH
Q 003472 264 ISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (817)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~~~~pvlgiP~~~~~~~~~~~~~l~~~~~~f~~l~~~l~~~~ 343 (817)
||||++++|+|+.||++|.|||+|+...+|.++|++|+++++||+++|..|.....+|.+|++...+.|..+++.+...+
T Consensus 228 INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (817)
T PLN02974 228 ISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWH 307 (817)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999998779999999999988878899999999899999999999999
Q ss_pred HHHHHhhccchhhhcCcccccCCCCCCCCCCCeEEEEeecCc--eeEEEeCccCccccceeeccccccccCCC-CCCCHH
Q 003472 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGE--NFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIE 420 (817)
Q Consensus 344 ~~r~~~~~~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~--~~~l~D~dG~~~~~~ylD~~sg~~~~~LG-h~~hP~ 420 (817)
.+|+++++.|.+++++++||||++++.+..+.|.+|++++|. -+|++|.+|++..++|||++||||++++| |+ ||+
T Consensus 308 ~~r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~-~p~ 386 (817)
T PLN02974 308 SGRLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTL-QPE 386 (817)
T ss_pred HHHhHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCC-CHH
Confidence 999999999999999999999999988765678999999996 12589999843345899999999999999 68 999
Q ss_pred HHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCc
Q 003472 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (817)
Q Consensus 421 V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~ 500 (817)
|++|+++|++++.|+++..++|+++.+||++|++.++.+++++|||++|||||||+|||||+|+|+.++|+..+..+.-.
T Consensus 387 I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~ 466 (817)
T PLN02974 387 LARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKR 466 (817)
T ss_pred HHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999887778899999999999997664557899999999999999999996668766553000000000
Q ss_pred cccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccc
Q 003472 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (817)
Q Consensus 501 ~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~ 580 (817)
....+|.+||+++++|||+|+++|++++.+.|+..++.+|+.+++.++++|..+++++.++++.|+.+++.... .+.+|
T Consensus 467 ~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~ 545 (817)
T PLN02974 467 GGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTW 545 (817)
T ss_pred cccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-ccccc
Confidence 00015889999999999999999999998878776446888888888888887777888888888665321000 01123
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEe
Q 003472 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (817)
Q Consensus 581 ~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~D 660 (817)
.+.++.|+..++.+++...|++.+++.|++....+++++|||||+|||+||+||+++||++|+++||++|++||++||+|
T Consensus 546 ~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~D 625 (817)
T PLN02974 546 ESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFD 625 (817)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33334444334456677778889999887432113467899999999669999999999999999999999999999999
Q ss_pred eeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHH
Q 003472 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (817)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L 740 (817)
||+|||||||++|+++++||+|||+|+||+|||||+|+||+++++++++.|....+...+.|++||+|||++||||+++|
T Consensus 626 EV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 626 EVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred ecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999964333346789999999999999999999
Q ss_pred HHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--chHHHHHHHHH-HcCCC
Q 003472 741 KWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--CLIELFLYNFL-TTGMH 816 (817)
Q Consensus 741 ~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--~~~~~~~~~~l-~~Gv~ 816 (817)
++++++++.+++.++++.++++|.+.+.+.+++||.|++|||+|+|++|||+++.....| .....+...++ ++|++
T Consensus 706 ~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~ 784 (817)
T PLN02974 706 QWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIY 784 (817)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEE
Confidence 999999899999999999999999888777788999999999999999999876432233 34567788888 89985
No 2
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-85 Score=726.08 Aligned_cols=398 Identities=29% Similarity=0.426 Sum_probs=344.4
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
+.+++||||++++..... |.+|++++|. |+||.||| +|||.+|||||+++||+ ||+|.+|+++|++++.|++
T Consensus 9 d~~~~whP~t~~~~~~~~-~~~i~~aeG~--yl~d~~G~----r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~~ 80 (449)
T COG0161 9 DLSHLWHPFTQMRDPLAE-PRVIVRAEGV--YLTDIDGR----RYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHVM 80 (449)
T ss_pred hhhheecccccccccccc-ceeeeeccee--EEEeCCCC----EEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCchh
Confidence 889999999999876444 8899998885 69999999 99999999999999999 9999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCc
Q 003472 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (817)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsy 516 (817)
+..++++++++||++|++++|++.+++|||++|||||||+||||| ++|+..+|+ ++|++||+++++|
T Consensus 81 ~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~------------p~r~~~Isr~~gY 147 (449)
T COG0161 81 FGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQ------------PQRKKFISRRNGY 147 (449)
T ss_pred hcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CcceEEEEeccCc
Confidence 778889999999999999999544899999999999999999999 788887776 7799999999999
Q ss_pred cCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhH
Q 003472 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (817)
Q Consensus 517 HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~ 596 (817)
||.|+++||++|....+.. +|. ++ ..++.+++.|+.|+.. +++ ...++.
T Consensus 148 HG~T~ga~Sv~g~~~~~~~----~~~-------~l----l~~~~~~~~P~~y~~~--------~~~--------~~~~~~ 196 (449)
T COG0161 148 HGDTLGAMSVGGPVALRHA----FYD-------PL----LPEVLHLPAPYAYRRG--------FFG--------EGDEEF 196 (449)
T ss_pred CcccchheeccCchhhhhh----hcc-------cc----ccCceecCCCcccccC--------CCC--------CChHHH
Confidence 9999999999996544422 111 11 2345678888776421 111 111222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
..+++.||+.+++ .++++|||||+|||+|++||+++||++||+++|++|++||||||+|||.|||||||++|+++
T Consensus 197 -~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e 271 (449)
T COG0161 197 -AEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE 271 (449)
T ss_pred -HHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh
Confidence 3567889999886 56799999999999777799999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
++||+|||+|+||||+|||+||||++++++|++.|.... ...|.||+||+|||++||||+|+|+++++ +++.+++
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAla~L~i~e~----e~l~~~~ 346 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAALANLDILEE----EDLLERV 346 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHHHHHHHHHh----cCHHHHH
Confidence 999999999999999999999999999999999998764 57899999999999999999999999999 5666667
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC---cchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG---YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~---~~~~~~~~~~~l~~Gv~ 816 (817)
+.++.+|.++|.+.+.++|.|+||||.|+|.+|||+.++.... .+....+...++++|++
T Consensus 347 ~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~ 409 (449)
T COG0161 347 AEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLL 409 (449)
T ss_pred HHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeE
Confidence 7777778878777788889999999999999999999864443 35677888888999985
No 3
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-79 Score=681.22 Aligned_cols=370 Identities=25% Similarity=0.341 Sum_probs=322.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||+||| +||||.+|+++.++||| ||+|++|+++|++++.|.......+++..+++|+|.
T Consensus 37 ~~p~~~~ra~G~--~l~DvdG~----~ylDf~sgi~v~~~GH~-hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~ 109 (447)
T COG0160 37 RFPLVIVRAEGA--YLYDVDGN----EYLDFLSGIAVLNLGHN-HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLT 109 (447)
T ss_pred cCcceEEecccC--EEEeCCCC----EEEEcccCcchhccCCC-CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence 357899999886 59999999 99999999999999999 999999999999999987655555699999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+|...+++++|+||||||||+|||+| |.||++ ..||+|.++|||+|.++|++|+....+
T Consensus 110 ~~~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~Tgr------------------~~viaf~~afHG~T~galslT~~~~~~ 170 (447)
T COG0160 110 ALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR------------------PGVIAFDGAFHGRTLGALSLTGSKPPY 170 (447)
T ss_pred HhCCcccCCeEEecCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCcccccchhhHHhccCcccc
Confidence 9988633789999999999999999999 899875 479999999999999999999865433
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. ++++ +.++++++|+|++|++... - +.+++...+.+++++.+....
T Consensus 171 ~~-------~~~~--------~~~~v~~~Pyp~~yr~p~~--------~---------~~~~~~~~~~~~~e~~i~~~~- 217 (447)
T COG0160 171 KA-------GFGP--------LPPGVYHVPYPNPYRCPFG--------I---------GGEECGDDALEYIERALFDLE- 217 (447)
T ss_pred cc-------CCCC--------CCCCeEEecCCccccCccc--------C---------chhhhhHHHHHHHHHHHHhhc-
Confidence 21 1222 1245789999999976421 0 113455556677888666532
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||++||+||+|||+|+||+|||
T Consensus 218 -~~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~ 295 (447)
T COG0160 218 -VGPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGG 295 (447)
T ss_pred -CCCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccC
Confidence 56789999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|+|+++++++++..+ .|++||+|||++||||+|+|++|++ ++|.++++.+|++|+++|.++.++
T Consensus 296 G-~Pl~avv~r~ei~~~~~g-------~~~~Tf~GNpva~Aaa~AvL~vie~----e~L~~~a~~~G~~l~~~L~~l~~~ 363 (447)
T COG0160 296 G-LPLSAVVGRAEIMDWPPG-------GHGGTFGGNPVACAAALAVLDVIEE----ENLLERAAELGEYLRDRLEELQEK 363 (447)
T ss_pred C-CceeEEeccHHhcccCCc-------ccCCCCCcCHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 899999999999994432 5999999999999999999999998 688888889999999999999999
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
||.|+||||+|||+||||+++... .+.+....+++.|+++|++
T Consensus 364 ~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Gli 408 (447)
T COG0160 364 HPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLL 408 (447)
T ss_pred cCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 999999999999999999987433 4558999999999999985
No 4
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-79 Score=663.26 Aligned_cols=340 Identities=27% Similarity=0.353 Sum_probs=300.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.+|+ +||||.+|+++++|||+ ||.|++|+++|++++.|.+ +.+.+++..+|+++|++
T Consensus 24 ~~~~~~~G~G~--~v~D~~G~----~YlDf~~Giav~~lGH~-hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~ 95 (404)
T COG4992 24 LPVVIVRGEGA--YVWDQQGR----EYLDFAAGIAVNNLGHC-HPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVE 95 (404)
T ss_pred CceeEEecccc--EEECCCCC----EeeeeccceeeeccCCC-CHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHh
Confidence 35688887775 69999999 99999999999999999 9999999999999999987 35789999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..| ++++|||||||+||||+|||+| |+|++. ++|.+||+|.++|||+|++++|+|+.+.|++
T Consensus 96 ~s~--~~d~vff~NSGaEA~EaAiKlA-Rk~~~~---------------~~k~~Iia~~nsFHGRT~galS~t~~~ky~~ 157 (404)
T COG4992 96 LSP--FADRVFFCNSGAEANEAALKLA-RKYTGD---------------PEKSKIIAFENSFHGRTLGALSATGQPKYRK 157 (404)
T ss_pred hCc--cccEEEEcCCcHHHHHHHHHHH-HHHcCC---------------CCCcEEEEEcCCcCCccceeeeccCChhhcc
Confidence 987 2789999999999999999999 788761 5678999999999999999999999988887
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+|. |. .+++.+ ++|||+ +.++++++
T Consensus 158 ~F~-Pl---------------~~g~~~----------------vpfnDi------------------~al~~ai~----- 182 (404)
T COG4992 158 GFG-PL---------------LPGFRH----------------VPFNDI------------------EALEAAID----- 182 (404)
T ss_pred CCC-CC---------------CCCcee----------------cCCCCH------------------HHHHHHhc-----
Confidence 521 11 123333 348886 56777775
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++||||+||| ||+||+++||++||+++|+||++||+|||+||||||+||||++|++||+||+|||+|++|+||||
T Consensus 183 ---~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 183 ---EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred ---cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+||+++++.+.+.+.. ..||+||+|||++||++.|+|+++.+ +++.+++++++++|+++|.++..++
T Consensus 259 -~PigA~la~~~~~~~~~~------G~HgSTfGGNpLacAv~~a~l~~l~~----e~ll~~v~~~g~~~~~~L~~l~~~~ 327 (404)
T COG4992 259 -FPIGAMLATEEIASAFTP------GDHGSTFGGNPLACAVALAVLEVLLE----EGLLENVREKGEYLLQRLRELKRRY 327 (404)
T ss_pred -ccceeeEEchhhhhcCCC------CcccCCCCcCHHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999777777743 36999999999999999999999999 4556666777778888888888999
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.|.+|||+|||+|++|..+. ....++..+.++|++
T Consensus 328 ~~v~~vRG~GLmiGiel~~~~------~a~~~~~~~~~~gvL 363 (404)
T COG4992 328 PLVKEVRGRGLMIGIELKEPY------RARDIVRALREEGVL 363 (404)
T ss_pred CceeeeecceeEEEEEecCcc------cHHHHHHHHHHCCeE
Confidence 999999999999999998862 567899999999975
No 5
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-75 Score=621.95 Aligned_cols=368 Identities=22% Similarity=0.282 Sum_probs=321.1
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|++|.+++|. |+||.+|+ +|||+.+|++++++||| ||+|++|+.+|+.++.|.+ ..+.+++..+||++|+
T Consensus 31 ~~Pl~Iv~~~~~--ylyDe~G~----ryLD~f~Gi~tvslGHc-hP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~ 102 (442)
T KOG1404|consen 31 KKPLVIVRGEGQ--YLYDEEGR----RYLDAFGGIVTVSLGHC-HPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALV 102 (442)
T ss_pred cCCceEEecceE--EEEcCCCc----eeehhhCCeEEEEcCCC-ChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHH
Confidence 458899988885 59999999 99999999999999999 9999999999999888865 4678999999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+|.+ +.+++|+||||||||.||||| |.||+. .+||+++++|||.|..++++|+.+.++
T Consensus 103 s~~P~~-l~~vfF~nsGsEANelal~ma-r~Yt~~------------------~diIa~r~~YHG~t~~t~glt~~~~~k 162 (442)
T KOG1404|consen 103 SKLPGD-LKVVFFVNSGSEANELALKMA-RLYTGN------------------LDIIARRNSYHGNTLYTLGLTGLSPWK 162 (442)
T ss_pred HhCCCC-ceEEEEecCCchHHHHHHHHH-HHhcCC------------------ceEEEeeccccCCchhhcccccCCccc
Confidence 999866 789999999999999999999 899865 499999999999999999999987666
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
..+ | ....++++..-|++++.. |.+ +. .++..+.|.+.++..+..
T Consensus 163 ~~~--------------~--~~~~~~~~~~~Pdp~r~~--------~~~-------~~-~~e~~d~~a~~l~d~i~~--- 207 (442)
T KOG1404|consen 163 QNF--------------P--GVASGVHHTMNPDPYRGI--------FGG-------SN-EEEASDRYAKELEDLILY--- 207 (442)
T ss_pred ccC--------------C--CCCCcccccCCCCccccc--------CCC-------Cc-hhhhHHHHHHHHHHHHHh---
Confidence 531 0 011356677778777642 222 11 234445566777777764
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++.|||+|+||| ||.||++.+|++||++++++|+++|+++|+|||||||||||.+|++|++||.|||+|++|+|||
T Consensus 208 -~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn 285 (442)
T KOG1404|consen 208 -DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN 285 (442)
T ss_pred -cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|||||+++++|++.+.... .|.+||+|||++||+++|+|+++++ ++++++++.+|.+|+++|.++.++
T Consensus 286 G-~Pl~AVvtt~EIa~v~~~~~-----~~fnTyggnP~a~avg~aVL~Vike----e~LqE~aa~vG~yl~~~l~~l~d~ 355 (442)
T KOG1404|consen 286 G-FPLGAVVTTPEIADVLNQKS-----SHFNTYGGNPVACAVGLAVLKVIKE----ENLQENAAEVGSYLLEKLAALKDK 355 (442)
T ss_pred C-CcceeeecCHHHHHHHHhcc-----ccccccCCCchhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9 99999999999999997542 3889999999999999999999999 899999999999999999999999
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCC---cchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAG---YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~---~~~~~~~~~~~l~~Gv~ 816 (817)
||+|+||||+|||+|+|+++++.+.. +.....+-.+|.+.||+
T Consensus 356 h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvl 401 (442)
T KOG1404|consen 356 HPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVL 401 (442)
T ss_pred CCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCee
Confidence 99999999999999999999862222 36777888999999986
No 6
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-74 Score=662.01 Aligned_cols=405 Identities=20% Similarity=0.245 Sum_probs=328.2
Q ss_pred hccchhhhcCcccccCCCCCCCCC--CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHH
Q 003472 350 LCDMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY 427 (817)
Q Consensus 350 ~~~~~~~~~~~l~~p~~~~~~~~~--~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~ 427 (817)
++++.+++.+++|+|++++..+.. ..|+++++++|. ++||.||| +||||++|+|++++||+ ||+|++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~v~~Av~~ 77 (461)
T PRK07482 5 IDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGI--RITDAQGR----RYIDAFAGLYCVNVGYG-RTEVAEAIAE 77 (461)
T ss_pred HHHHHHhhhhhccCCcccccccccccCCCeeEEeeeee--EEEECCCC----EEEEcccchhhhcCCCC-CHHHHHHHHH
Confidence 334455567789999987654321 247899998886 59999999 99999999999999999 9999999999
Q ss_pred HHHhccccCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccc
Q 003472 428 TAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506 (817)
Q Consensus 428 q~~~~~~~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r 506 (817)
|++++.+... ..+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|
T Consensus 78 q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r 143 (461)
T PRK07482 78 QAKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR------------PEK 143 (461)
T ss_pred HHHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCC
Confidence 9999875432 3467999999999999988754 689999999999999999999 788755443 568
Q ss_pred eEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchh
Q 003472 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586 (817)
Q Consensus 507 ~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~ 586 (817)
++||+|+++|||+|.+++++++.+.++.. +++ + ..++.+++.|+++++.. .+
T Consensus 144 ~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~~-------~~----- 195 (461)
T PRK07482 144 KKIISRWRGYHGSGVVTGSLTGLSLFHQH--------FDL----P----IARVLHTEAPHYYRRAD-------AG----- 195 (461)
T ss_pred ceEEEecCccCCccHhhhhccCCchhhhc--------cCC----C----CCCCEEcCCCccccccc-------cC-----
Confidence 99999999999999999999987655542 111 1 12345566665543210 00
Q ss_pred hhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecc
Q 003472 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666 (817)
Q Consensus 587 ~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGf 666 (817)
...+.+...+++.+++.+++ .++++|||||+||| ||+||+++||++|+++||++|++||+|||+|||||||
T Consensus 196 ----~~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGf 266 (461)
T PRK07482 196 ----MSEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGF 266 (461)
T ss_pred ----CCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 01123334567788888863 34678999999998 9999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 667 GRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
||||++|+++++||+|||+|+||+|||||+|+||+++++++++.+.... +...+.|++||+|||++||||+|+|+++++
T Consensus 267 GRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~ 346 (461)
T PRK07482 267 GRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER 346 (461)
T ss_pred CcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999889999999999999885321 123457999999999999999999999998
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 746 ~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++.++++|.++|.+++++||.|++|||.|+|++|||+++..... + .....+...++++||+
T Consensus 347 ----~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 418 (461)
T PRK07482 347 ----ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVI 418 (461)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcE
Confidence 45566667777777778888888999999999999999999986532111 1 2356788999999985
No 7
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-74 Score=654.99 Aligned_cols=401 Identities=23% Similarity=0.322 Sum_probs=329.4
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++||||+++..+....|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGV--YVYDIDGK----KLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEecccc--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccc
Confidence 3557889999999987654468899998886 59999999 99999999999999999 99999999999999877
Q ss_pred cCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
... ....+++..+||++|++.+|.+.+++|+|++|||||||+|||+| |+|++.+|. ++|++||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ------------PERTKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 543 24679999999999999885333789999999999999999999 888865543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. | ++ ..+++.+++.|+.+++ +||.. |.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~-----~---~~--------~~~g~~~~~~~~~~~~--------~~~~~--------d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRN-----Y---EP--------LLPGCFHVETPWLYRN--------PFTEQ--------DP 191 (449)
T ss_pred CCcCCcchhhhccCCCcccccc-----c---CC--------CCCCCEEeCCCccccc--------ccCCC--------CH
Confidence 9999999999999986654432 1 11 1134556666655432 24410 12
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.+...+.+.+|+.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 24445566778887763 34678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||+|||++||||+++|+++++ +++
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~----~~l 342 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR----EDL 342 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh----hhH
Confidence 9999999999999999999999999999999999998854311 12457999999999999999999999998 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|.+++.++.+++|.|++|||+|+|++|+|+++..... ......+...|+++||+
T Consensus 343 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 411 (449)
T PRK07481 343 PANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVL 411 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeE
Confidence 66667777777778777777899999999999999999976421111 23456788899999985
No 8
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-73 Score=654.06 Aligned_cols=399 Identities=20% Similarity=0.249 Sum_probs=321.6
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++.++.|+|++++.......|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~ 79 (459)
T PRK05965 7 IELDRAHLIHPVASYRGHEARGVTVLASAKGA--TLTDASGH----QLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELP 79 (459)
T ss_pred HHhhhhccccccccccccccCCCceEEeeeEe--EEEECCCC----EEEECcccHHhccCCCC-CHHHHHHHHHHHHhcC
Confidence 33455678999876532211247899998886 59999999 99999999999999999 9999999999999987
Q ss_pred ccCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE
Q 003472 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (817)
Q Consensus 434 ~~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (817)
+... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|.+||++
T Consensus 80 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~kii~~ 145 (459)
T PRK05965 80 YATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR------------PSKKQFISL 145 (459)
T ss_pred CcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC------------CCccEEEEe
Confidence 7543 2457899999999999998754 789999999999999999999 888765553 568899999
Q ss_pred cCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccC
Q 003472 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (817)
Q Consensus 513 ~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~ 592 (817)
+++|||+|.+++++|+.+.++.+ +++.. +++.+++.|+++++. ++ .+
T Consensus 146 ~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~--------~~---------~~ 192 (459)
T PRK05965 146 ERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRNP--------VG---------DD 192 (459)
T ss_pred cCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCcccccc--------cC---------CC
Confidence 99999999999999986655442 12111 123445555544321 11 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
.+++...+++.+++.|++ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++
T Consensus 193 ~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 193 PQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 123445567788888874 34578999999997 9999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 673 ~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
|+++++||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||+|||++||||+|+|+++++ ++
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~----~~ 343 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE----GG 343 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh----cc
Confidence 99999999999999999999999999999999999998854211 12357999999999999999999999998 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+.++++.++++|.+++.++ .++|.|++|||+|+|++|||+++.....+ .....+...++++||+
T Consensus 344 l~~~~~~~g~~l~~~l~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll 412 (459)
T PRK05965 344 LLANGQKAGPRFAAGLDAL-RAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLV 412 (459)
T ss_pred HHHHHHHHHHHHHHHHHhh-ccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeE
Confidence 5556667777777776665 46999999999999999999865322211 3467788999999985
No 9
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=2.2e-72 Score=642.54 Aligned_cols=398 Identities=25% Similarity=0.407 Sum_probs=321.5
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.++...++|+|++++.......|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~ 87 (453)
T PRK06943 15 VARSLRAVWHPCTQMKHHERLPLLPVARGEGA--WLYDRDGR----RYLDAISSWWVNLFGHA-NPRINAALKDQLDTLE 87 (453)
T ss_pred HHHhhcccccCCcCccccccCCCceEEecccC--EEEeCCCC----EEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456778999887643322357899998886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.......+++..+||++|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 88 ~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~------------~~r~~Ii~~~ 153 (453)
T PRK06943 88 HAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR------------GDKREFVCLA 153 (453)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC------------CCCCEEEEEC
Confidence 76655678999999999999988753 579999999999999999999 666644443 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++..+ .+.+ .++.+++.|+.++.. +. ...
T Consensus 154 ~~yHG~t~gals~~~~~~~~~~~--------~~~~--------~~~~~~~~p~~~~~~--------~~---------~~~ 200 (453)
T PRK06943 154 NGYHGETIGALGVTDVALFKDAY--------DPLI--------RHAHVVASPDARGAR--------PG---------ETA 200 (453)
T ss_pred CCcCCCcHHhhcccCChhhhccc--------ccCC--------CCCEEECCCCccccc--------cC---------CCH
Confidence 99999999999999876665531 1111 223445556443211 00 001
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.++...+++.+++.|++ ++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||+||
T Consensus 201 ~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 201 ADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 22333456778888863 4679999999994499999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+|+|++++++ ++.
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~----~l~ 351 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAED----DVL 351 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhc----CHH
Confidence 9999999999999999999999999999999999998854221234579999999999999999999999984 455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++.++++|.++|.++ .++|.|.+|||+|+|++|||+.+. +.+......+...++++||+
T Consensus 352 ~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gvel~~~~-~~~~~~~~~i~~~~~~~Gll 412 (453)
T PRK06943 352 ARNARKSARLRAALAPL-AAHPQVRHLRQRGTIFAFDVALDG-DAARTFSRRFFEAALERELL 412 (453)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCEEeEeccccEEEEEEccCC-CcchHHHHHHHHHHHHCCcE
Confidence 56666777777776665 568999999999999999998543 22234567888999999985
No 10
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=2.5e-72 Score=643.81 Aligned_cols=401 Identities=29% Similarity=0.450 Sum_probs=322.2
Q ss_pred chhhhcCcccccCCCCCCCCCC-CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 353 MPKRAGELFWWPFTQHKLVPEE-AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~-~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
+.+.+..++|+|++++...... +|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGA--WLVGHDGR----RYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEecccC--EEEeCCCC----EEEEcCccHHhccCCCC-CHHHHHHHHHHHHh
Confidence 3445567789999886532211 34678888775 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCC----CCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccce
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~----~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~ 507 (817)
+.+.....+.+++..+|+++|++.+|. +++++|+|++|||||||+|||+| |+|+..+|. ++|.
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~------------~~r~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE------------HRRT 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCCc
Confidence 877654457799999999999998764 23679999999999999999999 788765543 5688
Q ss_pred EEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhh
Q 003472 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (817)
Q Consensus 508 ~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~ 587 (817)
+||+|+++|||+|.+++++++.+.++.. | .++ .+++.+++.|+.+++.. ..
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~-----~---~p~--------~~~~~~~~~p~~~~~~~--------~~----- 213 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV-----Y---APL--------LLESLFAPSPDAYLAEP--------GQ----- 213 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc-----c---CCC--------CCCCEEeCCCCcccccc--------CC-----
Confidence 9999999999999999999987655542 1 111 12345666666553211 10
Q ss_pred hhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccc
Q 003472 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (817)
Q Consensus 588 ~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfG 667 (817)
..++....+.+.+++.++. .+++|||||+||++||+||+++||++||++||++|++||++||+||||||||
T Consensus 214 ----~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 214 ----SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ----CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 1122333456778888863 4678999999994499999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 668 RtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
|||++|+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+++|+++++
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~-- 362 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD-- 362 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999899999999999999885322223567999999999999999999999998
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++.++++|++ +++.++++|.|++|||+|+|++|||+.+...... .....+...++++||+
T Consensus 363 --~~l~~~~~~~g~~l~~-~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 433 (472)
T PRK08742 363 --DDVIARNQPTAARMTQ-LAAQIGEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVV 433 (472)
T ss_pred --CCHHHHHHHHHHHHHH-HHHHHhcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeE
Confidence 4566666677777774 5556678999999999999999999865322211 2346678899999985
No 11
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=5.6e-72 Score=639.50 Aligned_cols=397 Identities=22% Similarity=0.305 Sum_probs=321.6
Q ss_pred cchhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
++.+++.+++|+|+.... ...|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN---PNATMVVAKAEGA--WVTDIQGN----RYLDGMSGLWCVNVGYG-RKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc---cCCCeeEEeeeee--EEEeCCCC----EEEEccccHHhhcCCCC-CHHHHHHHHHHHHh
Confidence 444455667888864321 1347889998886 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+... .+.+++..+|+++|++.+|. .++|+|+||||||||+|||+| |+||+++|. ++|++||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~------------~~r~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE------------PHRYKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 876543 45789999999999999875 369999999999999999999 888866554 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++...++.. |. + ..+++.+++.|+.+++. +..
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~-----~~---~--------~~~~~~~~~~~~~~~~~--------~~~--------- 189 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK-----YE---P--------LAPGFLHVPPPDCYRMP--------GIE--------- 189 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc-----cC---C--------CCCCCEEeCCCcccccc--------ccC---------
Confidence 999999999999999987654432 11 1 11345566666555321 110
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
..+.....+++.+++.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 190 ~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 190 SEDIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 0112233445677888863 34678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
+|+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||||+|+|++++++ +
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~----~ 340 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE----N 340 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC----C
Confidence 999999999999999999999999999999999999998864322224679999999999999999999999884 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC---CcchHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA---GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~---~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++.++++|++++.++++++|.|++|||+|+|++|+|+++.... +.+....+...++++||+
T Consensus 341 ~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~ 408 (451)
T PRK07678 341 LIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLI 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcE
Confidence 55666677777777777788889999999999999999998653111 124567888999999985
No 12
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=2.1e-71 Score=636.04 Aligned_cols=399 Identities=28% Similarity=0.433 Sum_probs=321.8
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++..+.|+|++........+|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGV--WLEDFEGK----RYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEeeecc--EEEECCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876543222235688888886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.....+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~------------t~r~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK------------PRKKRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 76655678999999999999988744 689999999999999999999 777654443 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. +++. ..++.++|.|+++++.. + ...
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~--------~~p~--------~~~~~~~p~~~~~~~~~--------~---------~~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTET--------YKPL--------LLDTIKVPSPDCYLRPE--------G---------MSW 193 (466)
T ss_pred CCcCcccHHHHhccCCcccccc--------CCcc--------CCCCEEcCCCCcccccc--------C---------CCH
Confidence 9999999999999987655543 1111 12345666676553211 0 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.....+++.+++.+++ .+++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 22334456778888873 4689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+|+|+++++ +++
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~----~~l 344 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ----DNV 344 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCH
Confidence 999999999999999999999999999999999999885321 123467999999999999999999999998 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC-CCc----chHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~-~~~----~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|+++|.++ .++|.|++|||+|+|++|||+++... ..+ .....+.+.|+++|++
T Consensus 345 ~~~~~~~G~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 412 (466)
T PRK07030 345 IENNRALARRMAEATAHL-ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGAL 412 (466)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeE
Confidence 666677777777777665 57999999999999999999865311 111 2345788999999985
No 13
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=2.3e-71 Score=640.01 Aligned_cols=398 Identities=21% Similarity=0.270 Sum_probs=318.3
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
.+..+||||+++.......|+++++++|. |+||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+..
T Consensus 53 ~~~~~~~p~~~~~~~~~~~p~~i~~~~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~~~~~~~ 125 (504)
T PLN02760 53 KGHDMLAPFTAGWQSTDLEPLVIEKSEGS--YVYDINGK----KYLDALAGLWCTALGGS-EPRLVAAATEQLNKLPFYH 125 (504)
T ss_pred ccCCcccCcccccccccCCCceEEeeeee--EEEECCCC----EEEEcCcCHHhcccCCC-CHHHHHHHHHHHhhcccee
Confidence 45568999999876544468899998886 59999999 99999999999999999 9999999999999987653
Q ss_pred C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCC
Q 003472 437 F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (817)
Q Consensus 437 ~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gs 515 (817)
. ..+.+++..+||++|++.++...+++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+++
T Consensus 126 ~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~------------~~r~~iI~~~~~ 192 (504)
T PLN02760 126 SFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR------------PNKKKFIARSKS 192 (504)
T ss_pred cccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCC
Confidence 2 24578999999999999854333679999999999999999999 778755443 568899999999
Q ss_pred ccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchh
Q 003472 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (817)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~ 595 (817)
|||+|.+++++++.+.++.. +.++. +++.+++.|+.+++. +++. +.++
T Consensus 193 yHG~t~~a~slsg~~~~~~~------------~~~~~----~~~~~~~~p~~~~~~------~~~~----------~~~~ 240 (504)
T PLN02760 193 YHGSTLISASLSGLPALHQK------------FDLPA----PFVLHTDCPHYWRFH------LPGE----------TEEE 240 (504)
T ss_pred ccCChHhhhhccCChhhccC------------CCCCC----CCcEEeCCCcccccC------CCCC----------cHHH
Confidence 99999999999987655432 11111 223456666554321 0011 1122
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh
Q 003472 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~ 675 (817)
+...+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|++
T Consensus 241 ~~~~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~ 315 (504)
T PLN02760 241 FSTRLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGC 315 (504)
T ss_pred HHHHHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHH
Confidence 333445667777753 34678999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
+++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+|+|+++++++ +.+
T Consensus 316 e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~----l~~ 391 (504)
T PLN02760 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERN----IPE 391 (504)
T ss_pred HhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCC----HHH
Confidence 9999999999999999999999999999999999885421 12245799999999999999999999999854 455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
+++.++++|+++|.++ +++|+|.+|||.|+|++|+|+++..... .+....+...++++||+
T Consensus 392 ~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 457 (504)
T PLN02760 392 HVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGML 457 (504)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcE
Confidence 5555666666666655 7899999999999999999987532111 12466788999999985
No 14
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-71 Score=635.06 Aligned_cols=400 Identities=21% Similarity=0.269 Sum_probs=321.6
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.+.+.+++|+||+++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 83 (466)
T PRK07036 11 LAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGI--YVTDADGR----RYLDGIGGMWCVNVGYG-REEMADAIADQARRL 83 (466)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcee--EEEECCCC----EEEECcccHHhhcCCCC-CHHHHHHHHHHHHhC
Confidence 344566789999988755444458899998886 59999999 99999999999999999 999999999999998
Q ss_pred cccCCCC-CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 433 GHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 433 ~~~~~~~-~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
.+.+... ..+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------t~r~~Ii~ 149 (466)
T PRK07036 84 PYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR------------PAKKHIIT 149 (466)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 7765333 67999999999999988754 689999999999999999999 788765543 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++.+.++.. |.+ . .+++.+++.|+++++.. +.
T Consensus 150 ~~~~YHG~t~~a~s~~~~~~~~~~-----~~~-------~----~~~~~~~~~p~~~~~~~--------~~--------- 196 (466)
T PRK07036 150 RGDAYHGSTYLTASLTGKAADRTE-----FDY-------A----SDLVHHLSSPNPYRRPA--------GM--------- 196 (466)
T ss_pred EcCccCCccHhhhcccCCCccccc-----ccC-------C----CCCcEEecCCccccccc--------CC---------
Confidence 999999999999999986655432 211 0 12345666665543210 00
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
........+.+.+++.+.. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 197 ~~~~~~~~~~~~~~~~i~~----~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 271 (466)
T PRK07036 197 SEAAFCDFLVDEFEDKILS----LGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271 (466)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch
Confidence 0112223345566666653 35689999999998 999999999999999999999999999999999999999999
Q ss_pred cchhh-hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCC-CccceeecccCCCCCHHHHHHHHHHHHHhcCcCch
Q 003472 672 ETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 672 ~~a~e-~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~-~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~ 749 (817)
+|+++ ++|++|||+|+||+|||||+|+||+++++++++.+... .....+.|++||+|||++||+|+++|++++++
T Consensus 272 ~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~--- 348 (466)
T PRK07036 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE--- 348 (466)
T ss_pred hhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC---
Confidence 99998 79999999999999999999999999999999988532 11123579999999999999999999999884
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 750 ~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.++++|+++|.+ ++++|.|++|||.|+|++|||+++..... ......+...|+++||+
T Consensus 349 -~l~~~~~~~g~~l~~~L~~-l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 418 (466)
T PRK07036 349 -GLCEHVREVGPYFEERLAS-LRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLL 418 (466)
T ss_pred -CHHHHHHHHHHHHHHHHHH-hccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcE
Confidence 4555566666666666654 46799999999999999999986532111 13456788899999986
No 15
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=5e-71 Score=631.79 Aligned_cols=396 Identities=21% Similarity=0.287 Sum_probs=316.1
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++|+|++++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~ 84 (456)
T PRK07480 12 ALDAAHHLHPFSDMKALNEKGSRVITRAEGV--YLWDSEGN----KILDGMAGLWCVNVGYG-RKELADAAARQMRELPY 84 (456)
T ss_pred hhhhcccccCcccccccccCCCceEEeceee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3455678999877654332357889988885 69999999 99999999999999999 99999999999999876
Q ss_pred cCC-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 85 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~ 150 (456)
T PRK07480 85 YNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK------------PQKKVIISRK 150 (456)
T ss_pred cccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 542 2467999999999999998754 689999999999999999999 788765543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. .+++ .+++.+++.|+++++. ++ .+.
T Consensus 151 ~~yHG~tl~a~s~~g~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~---------~~~ 197 (456)
T PRK07480 151 NGYHGSTVAGASLGGMKYMHEQ--------GDLP--------IPGIVHIDQPYWFGEG--------GD---------MTP 197 (456)
T ss_pred CCcCCcchhhhhccCChhhhcc--------cCCC--------CCCCeecCCCcccccc--------cC---------CCh
Confidence 9999999999999986544331 1111 1234566666655431 00 011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.+....+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 198 ~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 272 (456)
T PRK07480 198 EEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF 272 (456)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh
Confidence 22333345667665543 34678999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ..+.|++||+|||++||||+|+|+++++++ +.
T Consensus 273 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~----l~ 346 (456)
T PRK07480 273 GSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPVAAAVALANLRILRDEG----IV 346 (456)
T ss_pred hhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCC--CCcccCCCCCcCHHHHHHHHHHHHHHHhCC----HH
Confidence 999999999999999999999999999999999999884211 235799999999999999999999999854 45
Q ss_pred HHH-HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC-CCc----chHHHHHHHHHHcCCC
Q 003472 754 PER-RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN-AGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~-~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~-~~~----~~~~~~~~~~l~~Gv~ 816 (817)
+++ +.++++|++++.+ +++||.|++|||+|+|++|||+++... ..+ .....+...|+++||+
T Consensus 347 ~~~~~~~g~~l~~~l~~-l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 414 (456)
T PRK07480 347 ERVRDDTGPYLQKRLRE-LADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLI 414 (456)
T ss_pred HHHHHHHHHHHHHHHHH-hhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcE
Confidence 555 3566666666666 567999999999999999999865321 111 1235677889999985
No 16
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=1.6e-70 Score=628.66 Aligned_cols=401 Identities=20% Similarity=0.263 Sum_probs=321.4
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.+++.++.|+|+..+..+....|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIERGEGI--YVYDDAGK----RYIEGMAGLWSVALGFS-EQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEeeeEE--EEEECCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHHhC
Confidence 345566788999876643322357889988885 59999999 99999999999999999 999999999999998
Q ss_pred cccC-CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 433 ~~~~-~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
.+.. +..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~------------t~r~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR------------PEKKKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 7643 22357999999999999998754 689999999999999999999 777755443 56889999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
++++|||+|.+++++++.+.++.. +++. .+++.+++.|+.+++ ++.. .
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~~--------~~~~~~~~~p~~~~~----------~~~~------~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDLP--------LDRILHTGCPHYYRF----------GLPG------E 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCCC--------CCCCEEcCCCccccc----------ccCC------C
Confidence 999999999999999986544432 1111 123456677755432 1110 0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
..+.....+.+.+|+.++. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 1123334456778888753 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchh
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~ 750 (817)
+|+++++||+|||+|+||+|||||+|+|++++++++++.+..... ...+.|++||+|||++||+|+++|++++++
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~---- 345 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER---- 345 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc----
Confidence 999999999999999999999999999999999999998864321 123569999999999999999999999984
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC-Cc----chHHHHHHHHHHcCCC
Q 003472 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 751 ~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~-~~----~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.++++|+++|.++ +++|.|++|||+|+|++|||+.+.... .+ +....+.+.++++||+
T Consensus 346 ~l~~~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl 415 (460)
T PRK06105 346 DLVGNAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVI 415 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeE
Confidence 45555566666677777776 889999999999999999998653211 11 2346788899999985
No 17
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.3e-70 Score=629.26 Aligned_cols=399 Identities=27% Similarity=0.407 Sum_probs=320.7
Q ss_pred hhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003472 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (817)
Q Consensus 354 ~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~ 433 (817)
.+++.+++|+|++++..+....|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 89 (460)
T PRK06916 17 SEKNKAYVWHPFTQMKDYLEEDPLIIERGEGR--KLYDVNGN----EYYDGVSSIWLNVHGHQ-VPELDEAIREQLNKIA 89 (460)
T ss_pred HHHHhhccccccccccccccCCCeeEEecccc--EEEeCCCC----EEEEcchhHHHhhcCCC-CHHHHHHHHHHHHhCC
Confidence 34455678999876533222358899998886 59999999 99999999999999999 9999999999999988
Q ss_pred ccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 434 ~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
+.......+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+
T Consensus 90 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~------------tgr~~ii~~~ 155 (460)
T PRK06916 90 HSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK------------PKKQRFVTLK 155 (460)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 76544567999999999999998754 689999999999999999999 777765543 5688999999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++++...++.. ++++ ..++.++|.|+.+++. ++. +.
T Consensus 156 ~~YHG~t~~als~s~~~~~~~~--------~~~~--------~~~~~~~p~p~~~~~~--------~~~---------~~ 202 (460)
T PRK06916 156 NAYHGDTIGAVSVGAIDLFHQV--------YSSL--------LFEAIKMPYPYTYRSP--------YGN---------DK 202 (460)
T ss_pred CcCCcccHHhHhccCCcccccc--------cCCC--------CCCCEEeCCCcccccc--------cCC---------Ch
Confidence 9999999999999987655542 1111 1234566777655321 110 11
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
++....+.+.+++.|+ .++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 203 ~~~~~~~~~~l~~~l~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~ 277 (460)
T PRK06916 203 AEIVKKHLEELEELLK-----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF 277 (460)
T ss_pred HHHHHHHHHHHHHHHH-----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh
Confidence 2333445677888887 34689999999993399999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ....+.|++||+|||++||||+++|+++++++ +
T Consensus 278 a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~----l 353 (460)
T PRK06916 278 ACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTN----L 353 (460)
T ss_pred HHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhcc----H
Confidence 999999999999999999999999999999999999875321 11245799999999999999999999998854 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
.++++.++++|++.+.++ .++|.|++|||+|+|++|||+++..... + .....+.+.++++||+
T Consensus 354 ~~~~~~~g~~l~~~l~~l-~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl 421 (460)
T PRK06916 354 IEQVARKTEYVATQLEDL-FALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGML 421 (460)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeE
Confidence 455556666666666655 4589999999999999999986532211 1 2346788999999985
No 18
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=2.6e-70 Score=626.95 Aligned_cols=396 Identities=18% Similarity=0.245 Sum_probs=315.9
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+++..+.|+||+++.......|+++++++|. ++||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~A~~~q~~~~~~ 88 (460)
T PRK12403 16 AADAAHHIHAFLDQKALNAEGPRVMVRGEGL--HLWDNDGK----RYLDGMSGLWCTNLGYG-RKDLAAAAARQMEQLPY 88 (460)
T ss_pred HhhhcccccccccccccccCCCceEEeceee--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 3445678999887643322357899998886 59999999 99999999999999999 99999999999999887
Q ss_pred cCCC-CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEc
Q 003472 435 VMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (817)
Q Consensus 435 ~~~~-~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~ 513 (817)
.+.. ...+++..+|+++|++++|.+ +++|+|+||||||||+|||+| |.|+...|. ++|.+||.+.
T Consensus 89 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~------------~~r~~ii~~~ 154 (460)
T PRK12403 89 YNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGK------------PQKKIMIGRW 154 (460)
T ss_pred eecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCCcEEEEEC
Confidence 5432 456899999999999998753 689999999999999999999 778654332 4577899999
Q ss_pred CCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 514 gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
++|||+|.+++++|+...++.. ++ ..+++.+++.|++|++.. +. ..
T Consensus 155 ~~yHG~t~~~~s~s~~~~~~~~---------~~--------~~~~~~~~~~p~~~~~~~---------~~--------~~ 200 (460)
T PRK12403 155 NGYHGSTLAATALGGMKFMHEM---------GG--------LIPDVAHIDEPYWYANGG---------EL--------TP 200 (460)
T ss_pred CCcCcccHhhhhcCCCcccccc---------CC--------CCCCCEEeCCCccccccc---------CC--------Ch
Confidence 9999999999999986544321 11 113455677776654210 10 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
....+.+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 201 ~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 201 AEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 12233345667666643 34578999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+.... ..+.|++||+|||++||||+|+|+++++++ +.
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~--~~~~~~~T~~gnPl~~Aaala~L~~i~~~~----l~ 349 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANLKALRDEG----VV 349 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhcc----HH
Confidence 999999999999999999999889999999999999885432 245699999999999999999999999844 45
Q ss_pred HHHH-HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC-c----chHHHHHHHHHHcCCC
Q 003472 754 PERR-ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-Y----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~-~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~-~----~~~~~~~~~~l~~Gv~ 816 (817)
++++ .++++|++.|.++.+++|.|++|||.|+|++|||+++..... . .....+...++++|++
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 418 (460)
T PRK12403 350 TRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVI 418 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEE
Confidence 5553 566666667777778999999999999999999986531111 1 1234466778999975
No 19
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-70 Score=623.78 Aligned_cols=378 Identities=21% Similarity=0.271 Sum_probs=308.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++
T Consensus 12 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 84 (443)
T PRK07483 12 TLPVAVAGEGI--YLIDATGK----RYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA 84 (443)
T ss_pred CCceEEeceEE--EEEeCCCC----EEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 47888888775 59999999 99999999999999999 9999999999999987654334578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++.
T Consensus 85 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 85 AAPAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ------------PQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred hCCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 88754 689999999999999999999 777655443 5688999999999999999999998654443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++.+ +++.+++.|+.| ++.. ...........+++.+++.+.+
T Consensus 151 ~--------~~p~~--------~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~l~~~~~~---- 194 (443)
T PRK07483 151 P--------FAPLL--------IEAHHVSPCYAY------------REQR----AGESDEAYGQRLADELEAKILE---- 194 (443)
T ss_pred c--------cCCCC--------CCCEEeCCCccc------------cccc----cCCCHHHHHHHHHHHHHHHHHh----
Confidence 2 11111 223445555433 2210 0001123334456777776653
Q ss_pred CCCCcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg-~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++|||||+||| || +||+++||++||++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|||
T Consensus 195 ~~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~g 273 (443)
T PRK07483 195 LGPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGA 273 (443)
T ss_pred cCCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhcc
Confidence 35678999999998 98 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
||+|+|++++++++++.+.... ..+.|++||+|||++||+|+|+|+++++ +++.++++.++++|+++|.+++++
T Consensus 274 G~~Pi~av~~~~~i~~~~~~~~--~~~~h~~T~~gnpl~~aaa~a~l~~i~~----~~l~~~~~~~g~~l~~~L~~l~~~ 347 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIADGS--GFFQHGHTYLGHATACAAALAVQRVIAE----DGLLANVRARGEQLRARLRERLGQ 347 (443)
T ss_pred CccccEEEEEcHHHHHHHhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9889999999999999885321 2456999999999999999999999998 456666777777788888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|.+|||+|+|++|||+++..... .+....+...++++|++
T Consensus 348 ~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 395 (443)
T PRK07483 348 HPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLM 395 (443)
T ss_pred CCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcE
Confidence 99999999999999999986532111 13456788999999985
No 20
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-70 Score=623.82 Aligned_cols=386 Identities=22% Similarity=0.271 Sum_probs=314.7
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+..++|+||+.+.. ..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~ 87 (451)
T PRK06062 18 ALDRAHVFHSWSAQGK---INPMVIAGAEGS--YVWDYEGR----RYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARLCT 87 (451)
T ss_pred Hhhhhhcccccccccc---CCCceEEeceee--EEEECCCC----EEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3445668888876421 357889888885 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
... .+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.||+| ++||+|++
T Consensus 88 ~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~tgr------------------~~ii~~~~ 146 (451)
T PRK06062 88 VAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLHTGR------------------PKVLSAYR 146 (451)
T ss_pred cCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHhhCC------------------ceEEEEeC
Confidence 654 567999999999999998754 689999999999999999999 788653 58999999
Q ss_pred CccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
+|||+|.+++++++.+.++.. + | ..+++..++.|+.+++ +|... ..+
T Consensus 147 ~yHG~t~~als~~~~~~~~~~---------~-----~---~~~~~~~~~~p~~~~~--------~~~~~--------~~~ 193 (451)
T PRK06062 147 SYHGGTGSAINLTGDPRRWPN---------D-----T---GRAGVVHFFGPFLYRS--------EFHAT--------TEE 193 (451)
T ss_pred CCCCCCHHHHhhcCCcccccC---------C-----C---CCCCCEEeCCCCcccc--------ccCCC--------ChH
Confidence 999999999999975433210 0 0 1124445556655432 12100 011
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
+....+.+.+++.|+. .++++|||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|+
T Consensus 194 ~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a 268 (451)
T PRK06062 194 EECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFA 268 (451)
T ss_pred HHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHH
Confidence 2333456788888863 34578999999998 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++||+|||+|+||+|||||+|+||+++++++++.+.. ..+.|++||+|||++||+|+|+|++++++ ++.+
T Consensus 269 ~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~----~l~~ 340 (451)
T PRK06062 269 IEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD----RPYPGGLTYSGHPLACAAAVATINAMEEE----GIVE 340 (451)
T ss_pred HHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHHHHHhc----CHHH
Confidence 999999999999999999999999999999999998853 23569999999999999999999999884 5666
Q ss_pred HHHHHH-HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--------chHHHHHHHHHHcCCCC
Q 003472 755 ERRILR-ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--------CLIELFLYNFLTTGMHP 817 (817)
Q Consensus 755 ~~~~lg-~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--------~~~~~~~~~~l~~Gv~~ 817 (817)
+++.++ ++|+++|.++.+++|.|++|||.|+|++|+|+++.....+ +....+...++++||++
T Consensus 341 ~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~ 412 (451)
T PRK06062 341 NAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLP 412 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEE
Confidence 666777 4677777777788999999999999999999864211111 24678899999999973
No 21
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-68 Score=608.97 Aligned_cols=400 Identities=22% Similarity=0.311 Sum_probs=321.4
Q ss_pred cchhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHh
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~ 431 (817)
.+.+.+.+++||||+.........|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGC--YIWDDRGK----RYLDGLAGLFVVQVGHG-RAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCccc--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhh
Confidence 4455667899999999855432357889998886 59999999 99999999999999999 99999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEE
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++..|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGK------------PGKHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 8876544577999999999999988754 689999999999999999999 777644332 46789999
Q ss_pred EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhcc
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~ 591 (817)
|+++|||+|.+++++++.+.++.. +++. .+++.+++.|+.++++ .|++
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~~-------~~~~--------- 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRAP-------ELGD--------- 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCcccccc-------ccCC---------
Confidence 999999999999999986654432 1111 1345566766655321 0211
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (817)
Q Consensus 592 ~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~ 671 (817)
+.+++...+++.+++.+++ .+++++||||+||| |+++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1123344556788888864 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhc
Q 003472 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHN 751 (817)
Q Consensus 672 ~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~ 751 (817)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+.... ..+.|++||++||++||+|+++|++++++++.
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~--~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~-- 348 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGP--TMFLHGYTFGGHPVSAAVALANLDIFEREGLL-- 348 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCC--CccccCCCCCCCHHHHHHHHHHHHHHHhccHH--
Confidence 99999999999999999999999889999999999999885432 34678999999999999999999999885544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC-Ccc-------hHHHHHHHHHHcCCC
Q 003472 752 IIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA-GYC-------LIELFLYNFLTTGMH 816 (817)
Q Consensus 752 l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~-~~~-------~~~~~~~~~l~~Gv~ 816 (817)
++++.++++|.++|.++. ++|.|.+|||.|+|++|||+++.... .+. ....+...|+++||+
T Consensus 349 --~~~~~~g~~l~~~L~~l~-~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 418 (460)
T PRK06541 349 --DHVRDNEPAFRATLEKLL-DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLY 418 (460)
T ss_pred --HHHHHHHHHHHHHHHHhh-cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeE
Confidence 455555666666665554 48999999999999999998652111 111 113577899999985
No 22
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-68 Score=605.24 Aligned_cols=374 Identities=23% Similarity=0.258 Sum_probs=303.9
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcC
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (817)
++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++.+|
T Consensus 16 ~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISHGKGV--YLYDQNGN----KYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEeeeee--EEEeCCCC----EEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 57887775 59999999 99999999999999999 9999999999999986654334678999999999999987
Q ss_pred CCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCC
Q 003472 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (817)
Q Consensus 458 ~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~ 537 (817)
.+ +++++|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~------------t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI------------QGKHKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 54 579999999999999999999 677655554 67899999999999999999999886544432
Q ss_pred CCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003472 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (817)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (817)
+++++ +++..++.|..+++. +++ +...+...+.+.+++.+++ .+.
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYRCP--------VQK---------VYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccccc--------cCC---------ChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 122344445433211 111 1122333455778888874 334
Q ss_pred CcEEEEEEcccccc-CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCC
Q 003472 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (817)
Q Consensus 618 ~~iAAvIvEPV~qg-~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~ 696 (817)
++|||||+||| |+ .||+++||++|+++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|||||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
|+||+++++++++.+.... ..+.|++||+|||++||||+++|++++++ ++.++++.++++|+++|.++.+++|.
T Consensus 277 Pi~a~~~~~~i~~~~~~~~--~~~~~~~T~~gnpl~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~ 350 (447)
T PRK06917 277 PIAATVVSDRVMEPILRGS--RSIMSGHTLSANPLSAATALAVLEYMEKH----NLPEKAAEKGEYLIKGLQKVQQQSTI 350 (447)
T ss_pred ceEEEEEcHHHHHHHhccC--cccccccCCCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999886432 24578999999999999999999999884 45566666777777778877788999
Q ss_pred cceEEeeeeEEEEEEecCCCCCC-----cchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~Gv~ 816 (817)
|.+|||.|+|++|||+++..... .+....+...|+++||+
T Consensus 351 i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 395 (447)
T PRK06917 351 IGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLL 395 (447)
T ss_pred EEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcE
Confidence 99999999999999986532111 13577889999999985
No 23
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=5.3e-68 Score=601.68 Aligned_cols=380 Identities=26% Similarity=0.387 Sum_probs=304.5
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+.+++|+|+.+.. ..|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~----~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~ 74 (422)
T PRK05630 6 EFDHRHIWHPYAAPG----VRNRLVTSTDGV--FLTLEDGS----TVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSH 74 (422)
T ss_pred hccccccccCcccCC----CCCeeEEeceee--EEEECCCC----EEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 345567888876522 357899988775 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
..+...++++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|++||+|++
T Consensus 75 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~ 140 (422)
T PRK05630 75 VMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGH------------PERTRLLTWRS 140 (422)
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECC
Confidence 7654567999999999999988754 689999999999999999999 788754443 56889999999
Q ss_pred CccCCccccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 515 syHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
+|||+|.+++++++.. .++.. | ++.+ ++..++|.|.... .+++
T Consensus 141 ~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~~--------~~~~------------ 184 (422)
T PRK05630 141 GYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVRG--------SSPQ------------ 184 (422)
T ss_pred CcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCcccC--------CChH------------
Confidence 9999999999998743 23321 1 1110 1223344442110 0011
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
+ ...+.+.+++.++ +++||||+||++||+||+++||++|+++||++|++||++||+|||||||||||++|
T Consensus 185 -~-~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 254 (422)
T PRK05630 185 -E-ISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254 (422)
T ss_pred -H-HHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence 1 2234566666653 47999999995599999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++||+|||+|+||+|||||+|+||+++++++++.+........+.|++||+|||++||+++++|++++++++.+++
T Consensus 255 a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~- 333 (422)
T PRK05630 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQV- 333 (422)
T ss_pred HHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHH-
Confidence 9999999999999999999999999999999999998854211134679999999999999999999999885554544
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++.+.. +.++|.|.+|||+|+|++|||.++. ....+...++++|++
T Consensus 334 ---~~~g~~l~~~L~~-l~~~~~v~~vRg~Gl~~~ie~~~~~------~~~~~~~~~~~~Gl~ 386 (422)
T PRK05630 334 ---KRIEAELIAGLSP-LAHLPGVADVRVLGAIGVVEMEQPV------DMEEATQAAVDHGVW 386 (422)
T ss_pred ---HHHHHHHHHHHHH-hhcCCCeeeeeccccEEEEEECCcc------cHHHHHHHHHHCCeE
Confidence 4555555555554 4568999999999999999997541 245788899999985
No 24
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=6.3e-68 Score=601.94 Aligned_cols=382 Identities=28% Similarity=0.457 Sum_probs=308.5
Q ss_pred hhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc
Q 003472 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (817)
Q Consensus 356 ~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~ 435 (817)
.+.+++|+||.+... ..++.++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~ 79 (429)
T PRK06173 9 LDRQHIWHPYSSVTD--PIPVYPVERADGV--MITLKDGR----RLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHI 79 (429)
T ss_pred hhhcccccccccccc--cCCCceEEeceee--EEEcCCCC----EEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCc
Confidence 455678998876532 1223568887775 59999999 99999999999999999 999999999999998876
Q ss_pred CCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCC
Q 003472 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (817)
Q Consensus 436 ~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gs 515 (817)
.+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|++||+|+++
T Consensus 80 ~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~ 145 (429)
T PRK06173 80 MFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE------------VQRTKFATIRSG 145 (429)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEECCC
Confidence 654567999999999999988754 789999999999999999999 788765543 568899999999
Q ss_pred ccCCccccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
|||+|.+++++|+.. .++.. + ++. .+++.+++.|+.. +. .
T Consensus 146 yHG~t~~a~s~~~~~~~~~~~-----~---~~~--------~~~~~~~~~p~~~-----------~~------------~ 186 (429)
T PRK06173 146 YHGDTWHAMSVCDPVTGMHGL-----F---NHS--------LPVQYFLPQPSIK-----------FG------------E 186 (429)
T ss_pred cCCcchhhhccCCCchhhhhc-----c---ccc--------CCCCeEeCCCCcc-----------cc------------h
Confidence 999999999998743 23321 1 111 0123345555321 10 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.....+++.+++.|+. .++++||||+||++||+||+++||++|+++|+++|++||++||+|||||||||||++|+
T Consensus 187 ~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a 261 (429)
T PRK06173 187 EWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA 261 (429)
T ss_pred hHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH
Confidence 1223345778888863 45789999999955999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++|++|||+|+||+|||||+|+|++++++++++.+... ....+.|++||++||++||+|+++|++++++++.+++
T Consensus 262 ~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~-- 338 (429)
T PRK06173 262 LEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG-EAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNI-- 338 (429)
T ss_pred HHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcC-CCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH--
Confidence 9999999999999999999999999999999999988532 1234679999999999999999999999885555554
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|+++|.++ .++|.|.+|||.|+|++|+|.+. .....+...++++||+
T Consensus 339 --~~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~------~~~~~i~~~l~e~Gi~ 391 (429)
T PRK06173 339 --QRIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEP------VNMATLQPRFVEHGIW 391 (429)
T ss_pred --HHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCc------ccHHHHHHHHHHCCeE
Confidence 45555555555543 56888999999999999999754 2356788999999985
No 25
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=7.4e-68 Score=601.85 Aligned_cols=349 Identities=22% Similarity=0.283 Sum_probs=291.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
++++.++.| +|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+||++|++.
T Consensus 58 ~~~~~~~~g--~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Av~~ql~~l~~~~~-~~~~~~~~~lAe~L~~~ 129 (442)
T TIGR03372 58 AVEWQAGGL--NTLIDTQGN----EFIDCLGGFGIFNVGHR-NPNVIAAVENQLAKQPLHSQ-ELLDPLRALLAKTLAAL 129 (442)
T ss_pred eeEEEeCCe--eEEEECCCC----EEEECCccHHhhhcCCC-CHHHHHHHHHHHHhCCCccc-ccCCHHHHHHHHHHHHh
Confidence 344555444 569999999 99999999999999999 99999999999999876542 35689999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
+|.+ +++|+|+||||||||+|||+| |.|+.. .+|.+||+++++|||+|.+++++|+.+.++.+
T Consensus 130 ~p~~-~~~v~f~~SGsEA~e~AlklA-r~~t~~---------------~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~ 192 (442)
T TIGR03372 130 TPGK-LKYSFFCNSGTESVEAALKLA-KAYQSP---------------RGKFTFIAASGAFHGKSLGALSATAKPAFRKP 192 (442)
T ss_pred CCCC-cCEEEEeCCchHHHHHHHHHH-HHHHhh---------------cCCcEEEEECCCccCCCHHHhhccCCcccCCC
Confidence 8754 578999999999999999999 788753 24679999999999999999999986655432
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+++. .+++.++| |+|. +.+++.+++.. .
T Consensus 193 --------~~p~--------~~~~~~~p----------------~~d~------------------~~~~~~l~~~~--~ 220 (442)
T TIGR03372 193 --------FMPL--------LPGFHHVA----------------FGDI------------------EAMLKALNECK--K 220 (442)
T ss_pred --------CCCC--------CCCCEEeC----------------CCCH------------------HHHHHHHHHHh--c
Confidence 1111 12233443 3442 12223332210 2
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++||+|||+|+||+|||||
T Consensus 221 ~~~~vAavIvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~ 299 (442)
T TIGR03372 221 TGDDVAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGV 299 (442)
T ss_pred CCCcEEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCc
Confidence 4578999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+||+++++++++.+.. .++.|++||+|||++||||+|+|+++++ +++.++++.++++|+++|.++..++|
T Consensus 300 ~Pigavv~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~----~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 300 MPIGATIATEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLE----KNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred ccceEEEecHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998843 2457999999999999999999999988 45666677778888888888778898
Q ss_pred -CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 -TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 -~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|++|||.|+|++|||.++ +....+...++++||+
T Consensus 372 ~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl 407 (442)
T TIGR03372 372 DLIIEARGKGLLMAIEFRDN------EIGYAFAKELFQQNIL 407 (442)
T ss_pred CceEEEecceEEEEEEeCCh------HHHHHHHHHHHHCCcE
Confidence 7899999999999999876 3567788999999985
No 26
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-67 Score=605.22 Aligned_cols=368 Identities=19% Similarity=0.211 Sum_probs=296.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+|+++|++
T Consensus 45 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 45 IPLALKRARGI--YVEDVEGR----QFIDCLAGAGTLALGHN-HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccCCccccccCCC-CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999997543222224678999999999999
Q ss_pred hcCCCCc--ceEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GVGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~~~~~~--~~v~f~-~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.+|.+.. ++++|+ ||||||||+|||+| |.+|+ |++||+|+++|||+|.+++++++...
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLV-KTATG------------------RSTVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHH-HHhhC------------------CCeEEEECCccCCccHHHHhhcCCcc
Confidence 8875311 378776 89999999999999 77765 45999999999999999999998654
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. +++. .+++.++++|+.+++. |+. ..++....+.+.+++.+++.
T Consensus 179 ~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~l~~~i~~~ 225 (464)
T PRK06938 179 PKKP--------LGAL--------LPGVQFLPYPYDYRCP--------FGL---------GGEAGVRANLHYLENLLDDP 225 (464)
T ss_pred cccc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------chhhHHHHHHHHHHHHHHhh
Confidence 4432 1111 1234566767554321 111 01222334567788888642
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++||+|||+|+||+|
T Consensus 226 ~--~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKgl 302 (464)
T PRK06938 226 E--SGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302 (464)
T ss_pred c--cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccc
Confidence 0 13358999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 692 TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 692 ggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
||| +|+||+++++++ +.+.. ..|++||+|||++||||+|+|+++++ +++.++++.++++|+++|.++.
T Consensus 303 ggG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~l~~----~~l~~~~~~~G~~l~~~L~~l~ 370 (464)
T PRK06938 303 GGS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRYIKE----HRLAEHAAAMGERLREHLRQLQ 370 (464)
T ss_pred cCC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999 899999999985 66632 25999999999999999999999988 5666777778888888888887
Q ss_pred HcCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 772 SSHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 772 ~~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
++||.|++|||.|+|++|||+++.... .......+...|+++|++
T Consensus 371 ~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 423 (464)
T PRK06938 371 RDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLI 423 (464)
T ss_pred HhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeE
Confidence 889999999999999999998653221 113456788999999975
No 27
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=2.3e-67 Score=599.76 Aligned_cols=392 Identities=22% Similarity=0.339 Sum_probs=311.7
Q ss_pred CcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC
Q 003472 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (817)
Q Consensus 359 ~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~ 438 (817)
...|+|+.+...+. ..|+++++++|. |+||.||+ +||||.+|+|+.++||+ ||+|++|+++|++++.+....
T Consensus 13 ~~~~~~~~~~~~~~-~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~ 84 (442)
T PRK13360 13 SAFWMPFTANRQFK-KAPRLLVAAKGM--YYTTHDGR----RVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPAF 84 (442)
T ss_pred cccccCcccccccc-CCCceEEeeeee--EEEeCCCC----EEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCcccC
Confidence 44688877654332 357889888885 59999999 99999999999999999 999999999999998776544
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|. ++|.+||+|+++|||
T Consensus 85 ~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yHG 150 (442)
T PRK13360 85 QMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE------------GSRTRLIGRERGYHG 150 (442)
T ss_pred CcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEcCCcCC
Confidence 567999999999999998754 689999999999999999999 778755432 457899999999999
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCch-hhhcccccccccccCcchhhhhccCchhHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~-~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~ 597 (817)
+|.+++++++...++.. +++. .+++.++|.|+. +++ +|.. +.+...
T Consensus 151 ~t~gals~tg~~~~~~~--------~~~~--------~~~~~~~p~~~~~~~~--------~~~~---------~~~~~~ 197 (442)
T PRK13360 151 VGFGGISVGGIVPNRKA--------FGAL--------LPGVDHLPHTLDLARN--------AFSK---------GQPEHG 197 (442)
T ss_pred ccHhhhhccCChhhhhc--------cCCC--------CCCCEEeCCCchhhcc--------ccCC---------ChHHHH
Confidence 99999999987655442 1111 112334554431 110 0111 012233
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhh
Q 003472 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 598 ~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
..+.+.+|+.++. .+++++||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 3456778888864 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc-cceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK-LKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 678 ~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~-~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
+||+|||+|+||+|||||+|+||+++++++++.+..... ...+.|++||++||++||+++++|++++++ ++.+++
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~----~l~~~~ 348 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE----GLLTRA 348 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC----CHHHHH
Confidence 999999999999999999999999999999998854321 123569999999999999999999999884 455555
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++.+.++ .++|.|.+|||.|+|++++|+... .........+..+++++||+
T Consensus 349 ~~~g~~l~~~l~~l-~~~~~v~~vrG~Gl~~~~~l~~~~-~~~~~~~~~~~~~l~~~Gvl 406 (442)
T PRK13360 349 ARLAPYWEDALHSL-RDAPHVIDIRNLGLVGAVELAPRD-GKPGKRAYEVFLKCFEKGLM 406 (442)
T ss_pred HHHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEEecCC-CCcchhHHHHHHHHHHCCcE
Confidence 66666666655544 568899999999999999998642 11123455677889999985
No 28
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=1.3e-67 Score=598.89 Aligned_cols=380 Identities=26% Similarity=0.396 Sum_probs=306.1
Q ss_pred hcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC
Q 003472 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (817)
Q Consensus 357 ~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~ 436 (817)
+.+++|+|++++.. ..+|.++++++|. ++||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~ 79 (428)
T PRK07986 9 DQRHIWHPYTSMTS--PLPVYPVVSAEGC--ELILADGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVM 79 (428)
T ss_pred cccccccCCccccc--CCCCeeEEeeeee--EEEeCCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcc
Confidence 44668999877643 1245788888885 59999999 99999999999999999 9999999999999988766
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCc
Q 003472 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (817)
Q Consensus 437 ~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsy 516 (817)
+....+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+| .+|++||+|+++|
T Consensus 80 ~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g-------------~~r~kii~~~~~y 144 (428)
T PRK07986 80 FGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EPRQRFLTLRHGY 144 (428)
T ss_pred ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC-------------CCCcEEEEECCCc
Confidence 44567999999999999998754 689999999999999999999 77764432 3478999999999
Q ss_pred cCCccccccccCCCC-CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchh
Q 003472 517 HGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (817)
Q Consensus 517 HG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~ 595 (817)
||+|.+++++++... ++.. |. +. .+++.+++.|+... . ++
T Consensus 145 HG~t~~a~s~~~~~~~~~~~-----~~---~~--------~~~~~~~~~p~~~~-----------~------------~~ 185 (428)
T PRK07986 145 HGDTFGAMSVCDPDNSMHSL-----YK---GY--------LPENLFAPAPQSRF-----------D------------GE 185 (428)
T ss_pred CCCcHhhhcccCCchhhhhc-----cC---CC--------CCCCEEECCCCccc-----------c------------hh
Confidence 999999999987432 3321 11 10 12334455553210 0 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh
Q 003472 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (817)
Q Consensus 596 ~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~ 675 (817)
......+.+++.|++ .++++||||+||++||+||+++|+++||++|+++|++||++||+|||||||||+|++|++
T Consensus 186 ~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 186 WDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred hHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 111123567777763 357899999999659999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
+++||+|||+|+||+|||||+|+||+++++++++.+.... ...+.|++||+|||++|||++++|++++++++ .++
T Consensus 261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~----~~~ 335 (428)
T PRK07986 261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-AGCFMHGPTFMGNPLACAVANASLSLLESGDW----QQQ 335 (428)
T ss_pred cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCH----HHH
Confidence 9999999999999999999999999999999999986432 12356999999999999999999999998544 455
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++|++.+.++ .++|.|++|||+|+|+++|+.++. ....+...++++|++
T Consensus 336 ~~~~g~~l~~~l~~l-~~~~~i~~vRg~Gl~~~ve~~~~~------~~~~~~~~l~~~Gl~ 389 (428)
T PRK07986 336 VAAIEAQLREELAPL-RDAPMVADVRVLGAIGVVETTRPV------NMAALQRFFVEQGVW 389 (428)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEeEeccceEEEEEeCCcc------cHHHHHHHHHHCCcE
Confidence 555566666665554 468999999999999999997652 356788999999985
No 29
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=2.9e-67 Score=599.38 Aligned_cols=393 Identities=21% Similarity=0.333 Sum_probs=314.4
Q ss_pred cCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC
Q 003472 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (817)
Q Consensus 358 ~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~ 437 (817)
...+|+||+++..+. ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+...
T Consensus 15 ~~~~~~~~~~~~~~~-~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFK-AAPRLLVSAEGM--YYTDADGR----KILDGTAGLWCCNAGHG-RPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccC-CCCceEEecccc--EEEeCCCC----EEEEccccHhhccCCCC-CHHHHHHHHHHHHhccCccc
Confidence 455799987764432 357889998886 59999999 99999999999999999 99999999999999877665
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCcc
Q 003472 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (817)
Q Consensus 438 ~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyH 517 (817)
..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++.+|. ++|.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQ------------GTRTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcC
Confidence 4567999999999999998754 689999999999999999999 788765443 45789999999999
Q ss_pred CCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhH
Q 003472 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (817)
Q Consensus 518 G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~ 596 (817)
|+|.+++++++.+.++.. | ++. .+++.+++.|+ .+++. +.. ..+..
T Consensus 153 G~t~gals~~~~~~~~~~-----~---~~~--------~~~~~~~~~~~~~~~~~--------~~~---------~~~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKM-----F---GGL--------LPGVDHLPHTLDLPENA--------FSK---------GQPEH 199 (445)
T ss_pred ccchhhhccCCChhhhhc-----c---CCC--------CCCCeEeCCCccccccc--------cCC---------ChHHH
Confidence 999999999986654432 1 111 12334455553 22110 110 01122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 597 ~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
...+.+.+++.++. .+.+++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 33455678888864 23578999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCC-ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
++|++|||+|+||+|||||+|+|++++++++++.+.... ....+.|++||++||++||+|+++|++++++ ++.++
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~----~l~~~ 350 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE----DLFER 350 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc----cHHHH
Confidence 999999999999999999999999999999999885421 1124569999999999999999999999884 45566
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.++++|++++.++ .++|.|.+|||.|+|++++|++.... .......+.+.++++||+
T Consensus 351 ~~~~g~~l~~~l~~l-~~~~~v~~vrg~Gl~~~v~~~~~~~~-~~~~~~~~~~~~~~~Gv~ 409 (445)
T PRK09221 351 AAELAPYFEDAVHSL-KGLPHVIDIRNIGLVAGIELAPRPGA-PGARGYEAFMKCFEKGLL 409 (445)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEecCceEEEEEEeccccc-ccchHHHHHHHHHHCCeE
Confidence 666777777665554 56899999999999999999864211 112345678899999985
No 30
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=2.5e-67 Score=600.99 Aligned_cols=351 Identities=23% Similarity=0.280 Sum_probs=295.3
Q ss_pred CCeEEEEeecC-ceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHH
Q 003472 374 EAVTVIDSRCG-ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 374 ~~p~vi~~~~G-~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
..|+++.+++| . |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...++...+|+++|
T Consensus 62 ~~~~~~~~~~G~~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~lae~L 133 (459)
T PRK11522 62 DYGAVEWQAGGLN--TLVDTQGQ----EFIDCLGGFGIFNVGHR-NPVVVSAVQNQLAKQPLHSQ-ELLDPLRAMLAKTL 133 (459)
T ss_pred CCCeeEEeccCeE--EEEECCCC----EEEECCcCHHhhhcCCC-CHHHHHHHHHHHhhCccccc-ccCCHHHHHHHHHH
Confidence 34678888888 6 49999999 99999999999999999 99999999999999876542 45689999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
++.+|.+ +++|+|+||||||||+|||+| |.||+++ +|.+||+++++|||+|.+++++++...+
T Consensus 134 ~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~~~~~~~ 196 (459)
T PRK11522 134 AALTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIATSGAFHGKSLGALSATAKSTF 196 (459)
T ss_pred HHhCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC---------------CCcEEEEecCCCCCCcHHHhhhcCCccc
Confidence 9988754 689999999999999999999 8898653 3579999999999999999999986655
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +++.. +++.++ +|||. +.+++.|++..
T Consensus 197 ~~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~~~ 226 (459)
T PRK11522 197 RKP--------FMPLL--------PGFRHV----------------PFGNI------------------EAMRTALSECK 226 (459)
T ss_pred ccC--------CCCCC--------CCCccc----------------CCCCH------------------HHHHHHHHHhh
Confidence 542 11110 112222 24543 23444444210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+||
T Consensus 227 --~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg 303 (459)
T PRK11522 227 --KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALG 303 (459)
T ss_pred --ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhh
Confidence 23578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|||+|+||+++++++++.+.. .++.|++||+|||++||||+|+|++++++ ++.++++.++++|+++|.++.+
T Consensus 304 gG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~ 375 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATINVLLEQ----NLPAQAEQKGDYLLDGFRQLAR 375 (459)
T ss_pred CCCccceeEEEcHHHHHHhcc----CCcccCCCCCCCHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743 24579999999999999999999999984 4556666677777777777777
Q ss_pred cCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 773 SHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++| .|++|||.|+|++|+|.++ +....+...++++||+
T Consensus 376 ~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~~Gvl 414 (459)
T PRK11522 376 EYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQRVL 414 (459)
T ss_pred hCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHHCCeE
Confidence 898 7899999999999999875 4567788999999985
No 31
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-67 Score=560.63 Aligned_cols=337 Identities=31% Similarity=0.450 Sum_probs=288.5
Q ss_pred CCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHH
Q 003472 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 373 ~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
...|+++++++|. .+||.+|+ +||||+|+||+..+||+ ||+|.+|+.+|+.+++|+++..++.+ +++|+++|
T Consensus 36 a~~pv~~~~gkg~--kl~D~~g~----EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l 107 (433)
T KOG1401|consen 36 ARYPVVIESGKGS--KLFDPDGK----EYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVL 107 (433)
T ss_pred CCCceeeecceee--eeecCCcc----eeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHH
Confidence 3467888887775 59999999 99999999999999999 99999999999999999986555555 99999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+.+++++.++|+|||||+||||+|||+| |+++..+-. ..+.+||+|+|||||+|+++|++++++.|
T Consensus 108 ~~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~~~~~~------------~~~t~~Iaf~nsyHG~tlgals~~~~s~y 174 (433)
T KOG1401|consen 108 SAVLGKGSAERVFFCNSGTEANETALKFA-RKFTGKKHP------------EKKTKFIAFENSYHGRTLGALSVTGNSKY 174 (433)
T ss_pred HhcccCCCccEEEEecCCcHHHHHHHHHH-HHhhcccCC------------ccceeEEEEecCcCCcchhHHHhhccccc
Confidence 99998888999999999999999999999 677654310 23578999999999999999999987766
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+-+ ++|- .|+.. +.+|||+ ..+++.++
T Consensus 175 ~~~------------~~p~------------~p~v~--------~~~ynd~------------------t~l~k~~~--- 201 (433)
T KOG1401|consen 175 GLP------------FDPI------------APDVV--------TAEYNDS------------------TALEKLFE--- 201 (433)
T ss_pred CCC------------CCCC------------CCcee--------ecccCCH------------------HHHHHHHH---
Confidence 643 2221 11111 1236664 67888888
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+.++|||||+||| ||+||+++++|+|+..||++|+++|++||+|||||||||+|..|++++++++|||.|+||.||
T Consensus 202 --~h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~ 278 (433)
T KOG1401|consen 202 --SHKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLG 278 (433)
T ss_pred --hCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhcc
Confidence 46788999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+||+++++++++.+..+. .+.||+||+|||++|++|..+|+.+.+++.+.+ +...+..|++++.+.++
T Consensus 279 gG-lPigA~~v~~kV~~~i~~~~---~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~----vs~~~k~L~~~l~e~~~ 350 (433)
T KOG1401|consen 279 GG-LPIGATGVRDKVAEMISPGD---HLYHGGTFSGNPLACSAGIKVLDELKDPETLKN----VSKIGKELRKLLDEYLK 350 (433)
T ss_pred CC-ceeEEEeehHHHHhhcCCCC---ccccCcccCCChhhhhHHHHHHHHHcCHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 99 99999999999999997654 378999999999999999999999999555555 45566666677788888
Q ss_pred cCCCc-ceEEeeeeEEEEEEecC
Q 003472 773 SHRTV-QRVVALGTLCAIELQAA 794 (817)
Q Consensus 773 ~~p~V-~~VrG~Glm~gIel~~~ 794 (817)
+++.. ...+|+|+++++++..+
T Consensus 351 ~~~~~i~g~~grgl~ig~~~~~p 373 (433)
T KOG1401|consen 351 KTPNSICGGVGRGLVIGFEFEGP 373 (433)
T ss_pred cCCCceeeeeeeEEEEEEEEeec
Confidence 88754 33499999999999776
No 32
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-66 Score=596.20 Aligned_cols=368 Identities=18% Similarity=0.175 Sum_probs=293.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~ 112 (459)
T PRK06931 40 LPLAIAKAQGV--WVTDVEGN----QYLDCLAGAGTLALGHN-HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLS 112 (459)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHH
Confidence 47788888886 59999999 99999999999999999 9999999999998744322224578999999999999
Q ss_pred hcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 455 GVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 455 ~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+|... ...+||+||||||||+|||+| |+||+| .+||+|+++|||+|.+++++|+...+
T Consensus 113 ~~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~als~t~~~~~ 173 (459)
T PRK06931 113 LLPGQGKEYCLQFTGPSGADAVEAAIKLA-KTYTGR------------------SNVISFSGGYHGMTHGALAVTGNLSP 173 (459)
T ss_pred hCCCccccceEEEeCCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCccc
Confidence 887421 123566799999999999999 788654 58999999999999999999986555
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +.+ ..+++.++++|+.+++. |+.. .++..+.+.+.+++.+++..
T Consensus 174 ~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~ 220 (459)
T PRK06931 174 KNA--------VNG--------LMPGVQFMPYPHEYRCP--------LGIG---------GEAGVKALTYYFENFIEDVE 220 (459)
T ss_pred ccC--------CCC--------CCCCcEEeCCCcccccc--------ccCC---------chhHHHHHHHHHHHHHHhhh
Confidence 442 111 11345567777665432 2210 01112223344555554210
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||||++|+++++||+|||+|+||+||
T Consensus 221 --~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~ 297 (459)
T PRK06931 221 --SGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG 297 (459)
T ss_pred --cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++ +.+.. ..|++||+|||++||+|+|+|+++++ +++.++++.++++|+++|.++.+
T Consensus 298 gG-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l~~----~~l~~~~~~~G~~l~~~L~~l~~ 365 (459)
T PRK06931 298 GG-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKILKE----ENLAQNAAERGEWLKAQLAELQK 365 (459)
T ss_pred CC-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 799999999874 66632 25999999999999999999999988 45566667777777778888778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
+||.|++|||.|+|++|||+++.... +.+....+...|+++|++
T Consensus 366 ~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 417 (459)
T PRK06931 366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLL 417 (459)
T ss_pred hCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcE
Confidence 99999999999999999998653221 123456788899999986
No 33
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2.6e-66 Score=592.69 Aligned_cols=371 Identities=19% Similarity=0.221 Sum_probs=301.1
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....+++..+|+++|++
T Consensus 35 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 107 (457)
T PRK05639 35 FPLVPKRGFGA--LIEDVDGN----VFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAE 107 (457)
T ss_pred CCceEEeeecC--EEEeCCCC----EEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHh
Confidence 36789998886 59999999 99999999999999999 9999999999999987664433457899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+ +++|+|+||||||||+|||+| |++|++ ++||+|+++|||+|.+++++++.. .++
T Consensus 108 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 167 (457)
T PRK05639 108 ISPIE-NPKVLFGLSGSDAVDMAIKVS-KFSTRR------------------PWILAFIGAYHGQTLGATSVAAFQSSQK 167 (457)
T ss_pred hCCCC-cCEEEEeCchHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHHHcCCCcccc
Confidence 88754 579999999999999999999 787654 589999999999999999998742 232
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +.+ ..+++..+|+|+.+++... +++. .+.+++...+.+.+++.|....
T Consensus 168 ~~--------~~~--------~~~~~~~~p~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~le~~l~~~~- 217 (457)
T PRK05639 168 RG--------FSP--------LMPNVVWIPYPNPYRNPWG------INGY-------EEPDELINRFLDYLENYVFSHV- 217 (457)
T ss_pred cC--------CCC--------CCCCceEeCCCcccccccc------cccc-------CCHHHHHHHHHHHHHHHHHHhh-
Confidence 21 111 1134556777765542110 1110 0122344455677777664210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 218 -~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~g 295 (457)
T PRK05639 218 -VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVAS 295 (457)
T ss_pred -cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcC
Confidence 24678999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+ .. .|++||++||++|||++|+|+++++ +++.++++.++++|+++|.++.++
T Consensus 296 G-~pi~av~~~~~i~~~~-~~------~~~~T~~g~p~~~aaa~a~l~~l~~----~~l~~~~~~~g~~l~~~L~~l~~~ 363 (457)
T PRK05639 296 G-MGLSGVIGRKELMDLT-SG------SALLTPAANPVISAAAEATLEIIEE----ENLLKNALKVGEFIKKRLLEMKES 363 (457)
T ss_pred C-CcceeEEehHHHHhhc-CC------CcccCCCcCHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999843 21 3679999999999999999999998 455566666777777788887788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||+|+|++++|.++....+.+....+...++++|++
T Consensus 364 ~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~ 406 (457)
T PRK05639 364 FEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLI 406 (457)
T ss_pred CCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeE
Confidence 9999999999999999998653222334567889999999985
No 34
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=5.1e-66 Score=590.95 Aligned_cols=372 Identities=23% Similarity=0.323 Sum_probs=301.3
Q ss_pred CcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC
Q 003472 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (817)
Q Consensus 359 ~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~ 438 (817)
+++|+|+... ..|+++++++|. ++||.||| +||||++ .|+.++||+ ||+|++|+++|++++.+.. .
T Consensus 43 ~~~~~~~~~~-----~~~~~i~~a~G~--~l~D~dG~----~ylD~~g-~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~-~ 108 (459)
T PRK06082 43 EVFLHQAMST-----PCLDVLASAEGI--YIEDVDGK----KYMDFHG-NNVHQLGYG-HPHVIEKVKEQMAKLPFSP-R 108 (459)
T ss_pred HHhcccccCC-----CCCceEEeeeee--EEEECCCC----EEEEccc-HhhcccCCC-CHHHHHHHHHHHHhCCCcc-C
Confidence 3356665432 236789998886 59999999 9999985 599999999 9999999999999987654 2
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.+++..+|+++|++++|.+ +++++|++|||||||+|+|+| |+|+++ .+||+|+++|||
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~tgr------------------~~ii~~~~~yHG 168 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHITGN------------------FKVVSLWDSFHG 168 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHhcCC------------------CEEEEEeCCCcC
Confidence 467899999999999998743 579999999999999999999 788653 589999999999
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
+|.+++++++.+.++.. +++. .+++.+++.|+.+++ +|++. +.+..
T Consensus 169 ~t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~--------~~~~~----------~~~~~ 214 (459)
T PRK06082 169 ASLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYRG--------AFPDA----------DGSDV 214 (459)
T ss_pred ccHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCccccc--------ccCCh----------hHHHH
Confidence 99999999987655542 1111 134556666655532 13321 12334
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+.+++.+++ .+++||||+||| ||+| +++||++||++||++|++||++||+|||||||||||++|+++++
T Consensus 215 ~~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 215 HYADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred HHHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 456778888863 357999999998 9985 77889999999999999999999999999999999999999999
Q ss_pred CCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHH
Q 003472 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRI 758 (817)
Q Consensus 679 gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~ 758 (817)
||+|||+|+||+|||||+|+|++++++++++.+.. .+.| +||+|||++||||+|+|++++++ ++.++++.
T Consensus 287 gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~----~l~~~~~~ 356 (459)
T PRK06082 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQE----GLLEKVKA 356 (459)
T ss_pred CCCCCEEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhc----CHHHHHHH
Confidence 99999999999999998899999999998866521 2346 89999999999999999999884 45556666
Q ss_pred HHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 759 LRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 759 lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++|+++|.++.+++|.|++|||+|+|++|||+++... ...+....+...|+++||+
T Consensus 357 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 416 (459)
T PRK06082 357 DSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLS 416 (459)
T ss_pred HHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCE
Confidence 777777777777788999999999999999999865311 1224567888999999985
No 35
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=100.00 E-value=1.1e-66 Score=575.98 Aligned_cols=339 Identities=27% Similarity=0.426 Sum_probs=281.0
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcC
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~ 457 (817)
+|++++|.+ +||.||+ +||||++++|++++||+ ||+|++|+++|++++.+.++....+++..+|+++|.+.+|
T Consensus 1 ~i~~a~G~~--l~d~dG~----~~lD~~~~~~~~~lGh~-~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p 73 (339)
T PF00202_consen 1 FIERAEGAY--LWDVDGR----EYLDFMSGYGSVNLGHN-HPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFP 73 (339)
T ss_dssp EEEEEEBTE--EEETTSE----EEEESSHHHHTTTT-BT--HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSS
T ss_pred CeEEeecCE--EEECCCC----EEEECCCCccceecCCC-ccccchhHHHHhhhcccccccceeccchhhhhhhhhhccc
Confidence 577888865 9999999 99999999999999999 9999999999999998887667889999999999999997
Q ss_pred CCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCC
Q 003472 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (817)
Q Consensus 458 ~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~ 537 (817)
.+ +++|+|++||+||||+|||+| |++...++. ++|.+|++|+++|||+|.+++++++.+.++.. .
T Consensus 74 ~~-~~~v~f~~sGseAve~Alkla-~~~~~~~~~------------~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~-~ 138 (339)
T PF00202_consen 74 GG-LDRVFFANSGSEAVEAALKLA-RQYHNKRAY------------TGRRKILAFEGSYHGRTLGALSLTGNPPYRKG-F 138 (339)
T ss_dssp TT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTHH------------HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT-T
T ss_pred cc-cceeeeccCchHHHHHHHHHh-hcccccccc------------cCCceEEEeeeeeeccCcccccccCCcccccc-c
Confidence 64 889999999999999999999 555444332 56889999999999999999999887766653 1
Q ss_pred CCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 003472 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (817)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~ 617 (817)
.++ ..++.++|.|+... ......+.+.+++.+.+ ...
T Consensus 139 ~~~---------------~~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~ 175 (339)
T PF00202_consen 139 GPL---------------YPGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNA 175 (339)
T ss_dssp CSS---------------STTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHG
T ss_pred ccc---------------ccccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcC
Confidence 111 12334566554431 01112223444444443 346
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P 697 (817)
++|||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|+|| +|
T Consensus 176 ~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LP 253 (339)
T ss_dssp GGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SS
T ss_pred CcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hh
Confidence 78999999998 99999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|++++++++++.+... .|++||++||++|++|+++|+++++ +++.++++.++++|+++|.++.++++.|
T Consensus 254 ~sav~~~~~i~~~~~~~------~~~~T~~g~p~~~aaa~~~l~~~~~----~~~~~~~~~~g~~l~~~L~~l~~~~~~i 323 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQPG------SHGSTFGGNPLSCAAALATLEILEE----EDLLERVRELGERLREGLRELAARYPLI 323 (339)
T ss_dssp EEEEEEEHHHHTTSCTT------SSTCTTTT-HHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred cccccccchhhcccccc------ccccccccchHhhhhhhhHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999999988543 3999999999999999999999998 4556666677777777888777888999
Q ss_pred ceEEeeeeEEEEEEec
Q 003472 778 QRVVALGTLCAIELQA 793 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~ 793 (817)
.+|||.|+|++|||++
T Consensus 324 ~~vrg~Gl~~~ie~~k 339 (339)
T PF00202_consen 324 GEVRGIGLMIGIELVK 339 (339)
T ss_dssp EEEEEETTEEEEEESS
T ss_pred EEEeeeCeEEEEEEEC
Confidence 9999999999999975
No 36
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-66 Score=536.94 Aligned_cols=350 Identities=23% Similarity=0.328 Sum_probs=295.9
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++.+++|.+ +||.+|+ +||||.|++++++-||| ||.|++|+++|++++..++. .+.++...++++.+.++
T Consensus 42 pvvf~ka~g~~--vwD~eGk----~ylDflsaysaVnqGhc-hpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSKAKGSR--VWDPEGK----EYLDFLSAYSAVNQGHC-HPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEecCCcE--EECCCcc----chhhhhhhhhhcccCCC-CHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHHHHh
Confidence 67888888864 9999999 99999999999999999 99999999999999877653 35688999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
+| +++|+-.|||+||+|+|+|+||++.+..++. | .++.+|++..++|||+|++++++++.+..
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i-----p------~nka~il~~~~nFhGrT~~ais~s~d~ds--- 176 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI-----P------KNKAKILSAENNFHGRTLGAISLSTDPDS--- 176 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHHHHHHHhhccC-----C------ccceeEEEecccccCceeeeEEecCCcch---
Confidence 98 6899999999999999999994444544443 1 36789999999999999999999975421
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+.++|+|. |.+ +.. ++|+|. +.|+..|+
T Consensus 177 -----~~~fgp~~--P~~-----~~~----------------v~Y~d~------------------eale~~l~------ 204 (427)
T KOG1402|consen 177 -----WDGFGPFL--PGV-----VDK----------------VPYGDA------------------EALEVALK------ 204 (427)
T ss_pred -----hhccCCCC--CCc-----cee----------------eccCCH------------------HHHHHHhc------
Confidence 12344432 110 111 457774 66788876
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
...+||||+||| ||++|+++||++||+++|+||++|+++||+||||||+||||++|+++|.+|+|||+++||+|+||+
T Consensus 205 -~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~ 282 (427)
T KOG1402|consen 205 -SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGV 282 (427)
T ss_pred -CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCe
Confidence 368999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+||+++++++|-.+... .||+||+|||++|++|.|+||++++ ++|.++++.+|+.|+.+|.++.++.|
T Consensus 283 ~Pvsavl~~~~im~~~~pg------eHgsTyggNpLg~~vaiAalevi~e----ekL~era~~lG~~l~~~L~~l~~~~p 352 (427)
T KOG1402|consen 283 YPVSAVLADDDIMLNIKPG------EHGSTYGGNPLGCAVAIAALEVIVE----EKLVERAAKLGEILRDQLNKLQKKFP 352 (427)
T ss_pred eeeEEEEecHHHHhccCCC------ccccccCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999987443 5999999999999999999999998 78999999999999999999888888
Q ss_pred C-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 T-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. |.+|||+|++.+|++...+ ..+++.-+ .-..+.++|+|
T Consensus 353 ~~v~~VRGrGl~~ai~i~~~~-~~~~~aw~-~cl~lk~~g~L 392 (427)
T KOG1402|consen 353 HVVKEVRGRGLLNAIVINPSK-TSGQDAWD-VCLALKENGLL 392 (427)
T ss_pred chhheeeccceEEEEEecccc-ccchhHHH-HHHcccccccc
Confidence 5 7999999999999998653 22222211 22345566654
No 37
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=5.1e-65 Score=581.66 Aligned_cols=366 Identities=23% Similarity=0.299 Sum_probs=295.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....++...+|+++|++
T Consensus 38 ~p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 110 (443)
T PRK06058 38 LPVYVARAGGG--IVEDVDGN----RLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNR 110 (443)
T ss_pred CCceEEeeeee--EEEeCCCC----EEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999987665444568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|..+.++++|++|||||||+|||+| |.|+++ .+||+++++|||+|.+++++|+.. .++
T Consensus 111 ~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 111 LTPGDHEKRSALFNSGAEAVENAVKIA-RSYTGR------------------QAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 887433469999999999999999999 788654 589999999999999999998743 222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++. .+++.+++.|++++ +.. ....+.++....+.+.+++.+
T Consensus 172 ~~--------~~~~--------~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~l~~~~----- 215 (443)
T PRK06058 172 SG--------FGPF--------APEVYRAPMSYPYR------------DPK---GLATDGEEAAARAITVIEKQV----- 215 (443)
T ss_pred cc--------cCCC--------CCCceEcCCCcccc------------ccc---ccccchHHHHHHHHHHHHHhh-----
Confidence 21 1111 12234445444432 110 000011122222334444433
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++|||||+||+ ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 216 --~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~ 292 (443)
T PRK06058 216 --GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG 292 (443)
T ss_pred --CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence 2468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||+|||++||||+++|+++++ +++.++++.++++|.++|.++.++
T Consensus 293 G-~Pi~av~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~L~~~~~----~~l~~~~~~~g~~l~~~L~~l~~~ 361 (443)
T PRK06058 293 G-LPLSAVTGRAEIMDAPHPG------GLGGTYGGNPVACAAALAAIETIEE----DDLVARARQIEALMTDRLRALAAE 361 (443)
T ss_pred C-CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 7999999999999988532 4899999999999999999999988 456666677778888888887788
Q ss_pred CCCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++++|+++.. ..+.+....+...|+++||+
T Consensus 362 ~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 405 (443)
T PRK06058 362 DDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVI 405 (443)
T ss_pred CCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeE
Confidence 99999999999999999987521 12234677889999999985
No 38
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-64 Score=578.49 Aligned_cols=368 Identities=19% Similarity=0.249 Sum_probs=302.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 24 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 96 (445)
T PRK08593 24 YPLVIDHGYGA--TLTDVDGK----TYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE 96 (445)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999988766545679999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC-CC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~-~~ 533 (817)
.+|.++.++|+|+||||||||+|||+| |.+|+| ++||+++++|||+|.+++++++... ++
T Consensus 97 ~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tgr------------------~~ii~~~~~YHG~t~~als~s~~~~~~~ 157 (445)
T PRK08593 97 LAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTGR------------------PYIISFTNAYHGSTYGSLSMSGISLNMR 157 (445)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCCcHHHHhhcCCCcccc
Confidence 987543479999999999999999999 788754 5899999999999999999997532 22
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++. .+++.++++|+.+++. +.. ...+....+++.+++.+++.
T Consensus 158 ~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~-- 202 (445)
T PRK08593 158 RK--------YGPL--------LPGFVHIPFPDKYRGM--------YEE---------PDANFVEEYLAPLKEMFEKY-- 202 (445)
T ss_pred cC--------CCCC--------CCCcEEeCCCcccccc--------ccC---------CcHHHHHHHHHHHHHHHHhh--
Confidence 21 1111 1345667777665431 110 01122344556777777532
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+|||
T Consensus 203 -~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~ 280 (445)
T PRK08593 203 -LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAG 280 (445)
T ss_pred -cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||++||++|||++++|++++++ ++.++++.++++|+++|.++.++
T Consensus 281 G-~p~gav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l~~~ 349 (445)
T PRK08593 281 G-MPMSAIVGRKEIMESLEAP------AHLFTTGANPVSCAAALATIDMIEDE----SLLQRSAEKGEYARKRFDQWVSK 349 (445)
T ss_pred C-cccEEEEEcHHHHhhhccC------CCCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 7999999999999988422 47889999999999999999999884 55566666777777777777788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++++|..+... .+.+....+...|+++||+
T Consensus 350 ~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~ 394 (445)
T PRK08593 350 YNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVV 394 (445)
T ss_pred CCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence 999999999999999999864211 1224567788999999985
No 39
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=2.6e-64 Score=575.40 Aligned_cols=368 Identities=18% Similarity=0.201 Sum_probs=292.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.......++...+||++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 93 (442)
T TIGR00709 21 LPTAFAKAQGC--WVTDVEGK----EYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN 93 (442)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999866544334568999999999999
Q ss_pred hcCCC--CcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 455 GVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 455 ~~~~~--~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
.+|.+ ....+||+||||||||+|||+| |+||+| ++||+++++|||+|.+++++++...+
T Consensus 94 ~~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~~s~t~~~~~ 154 (442)
T TIGR00709 94 IIPKRKMDYKLQFPGPSGADAVEAAIKLA-KTYTGR------------------TNVISFSGGFHGMTIGALAVTGNLFA 154 (442)
T ss_pred hCCCcCCCccEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCchHHHHhhcCChhh
Confidence 88742 1234566799999999999999 788654 58999999999999999999986544
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.+ +.+. .+++..++.|+.+++ +|+.- .+.....+.+.+++.++...
T Consensus 155 ~~~--------~~~~--------~~~~~~~~~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 155 KNA--------VGML--------MPGVQFMPYPHEYRC--------PFGIG---------GEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred hcc--------CCCC--------CCCcEEeCCCccccc--------cccCC---------chhHHHHHHHHHHHHHHhhc
Confidence 432 1111 123345556655432 12210 01112223344555554211
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
...+++||||+||+ ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||
T Consensus 202 --~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~ 278 (442)
T TIGR00709 202 --SGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVG 278 (442)
T ss_pred --cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEccccc
Confidence 23568999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|+++++++ ++.+.. ..|++||+|||++||||+++|++++++ ++.++++.++++|.+++.++.+
T Consensus 279 ~G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~ 346 (442)
T TIGR00709 279 GG-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYWKDD----NLAQNAQERGERITSFLDDMIK 346 (442)
T ss_pred CC-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99 89999999999 566532 258899999999999999999999884 5555666777777777777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCC--------CcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNA--------GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~--------~~~~~~~~~~~~l~~Gv~ 816 (817)
+||.|++|||+|+|++|||+++.... +.+....+...++++|++
T Consensus 347 ~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 398 (442)
T TIGR00709 347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLL 398 (442)
T ss_pred hCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeE
Confidence 99999999999999999998653111 123567788899999985
No 40
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=6.6e-64 Score=569.80 Aligned_cols=385 Identities=31% Similarity=0.447 Sum_probs=311.0
Q ss_pred chhhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhc
Q 003472 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (817)
Q Consensus 353 ~~~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~ 432 (817)
+.++..+.+|+|++++... ..|+++++++|. ++||.||+ +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVRAEGA--YLYLADGR----ELIDAISSWWVATHGHN-HPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEecccc--EEEeCCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHhhC
Confidence 3345567789998776432 357899998886 59999999 99999999999999999 999999999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE
Q 003472 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (817)
Q Consensus 433 ~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~ 512 (817)
.+..+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |+|+..+|. ++|++||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~------------~~r~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE------------PGRSRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 776544567899999999999998744 689999999999999999999 778655443 568899999
Q ss_pred cCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccC
Q 003472 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (817)
Q Consensus 513 ~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~ 592 (817)
+++|||+|.+++++++...++.. +.+ . ..++..+++| ++|
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~-----~~~---~--------~~~~~~~~~~--------------~~d---------- 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL-----YTP---L--------LFEQVTAPFP--------------PDG---------- 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc-----ccC---c--------CCCCEEeCCC--------------cch----------
Confidence 99999999999999976544321 110 0 0122344443 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 593 ~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
....+.+.+++.+++ .++++||||+||++|++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 112335677888863 357899999999449999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 673 ~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
|+++++|++|||+|+||+|+|||+|+|++++++++++.+........+.|++||++||++|++++++|+++++++ +
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~----~ 328 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEP----V 328 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcC----H
Confidence 999999999999999999999999999999999999988532111345699999999999999999999998844 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.++++.+++++++.+.++ .++|.|.+|||.|+|++|+|.++. . .+....+...++++||+
T Consensus 329 ~~~~~~~g~~l~~~l~~l-~~~~~i~~vrg~Gl~~~i~l~~~~--~-~~~~~~l~~~l~~~Gv~ 388 (423)
T PRK05964 329 LERVAALSAGLAEGLEPF-RDLPGVADVRVLGAIGAVELDRPV--L-ERDGPALRAFALERGVL 388 (423)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCeEEeecccEEEEEEeccCc--c-hhHHHHHHHHHHHCCeE
Confidence 555556666666665544 468889999999999999997652 0 12466788899999985
No 41
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.9e-63 Score=567.78 Aligned_cols=367 Identities=22% Similarity=0.283 Sum_probs=298.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.+++..+||++|++
T Consensus 36 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~ 108 (441)
T PRK05769 36 YPLVIERGEGV--WVEDVDGN----VYLDFNAGIAVTNVGHA-HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE 108 (441)
T ss_pred CCeeEEecceE--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH
Confidence 46788888775 59999999 99999999999999999 9999999999999988765545678999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+++++|+|+||||||||+|||+| |+|+++ .+||+++++|||+|.+++++++.. .++
T Consensus 109 ~~p~~~~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 109 IAPGGFEKKVFFTNSGTESNEAAIKIA-RYHTGR------------------KYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHHhCC------------------CeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 887544689999999999999999999 788754 589999999999999999998643 232
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHH-HHhcCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNP 612 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~-~L~~~~ 612 (817)
.. |. + ..+++.+++.|+.++. +|++. +.++..+.+.+.+++ .+++.
T Consensus 170 ~~-----~~---~--------~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~le~~~~~~~- 216 (441)
T PRK05769 170 KG-----FF---P--------LMPGVIHVPYPNPYRN--------PWGIE--------NPEECGNAVLDFIEDYLFKKL- 216 (441)
T ss_pred cC-----CC---C--------CCCCeEEeCCCccccc--------cccCC--------chHHHHHHHHHHHHHHHHhhc-
Confidence 21 11 1 1134556677765532 13311 112333345566777 33321
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|++||++|+||++|
T Consensus 217 --~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~ 293 (441)
T PRK05769 217 --VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIA 293 (441)
T ss_pred --cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++++.+. ..|++||+|||++|++|+++|+++++ ++.+++. .++++|+++|.++.+
T Consensus 294 ~G-~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~----~~g~~l~~~L~~l~~ 360 (441)
T PRK05769 294 GG-LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEELEE-GLLENAQ----KLGEYLRKELKELKE 360 (441)
T ss_pred CC-cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHH
Confidence 99 89999999999986442 25899999999999999999999977 6555555 455556667777777
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++|.+++|||.|+|++|+|+++..+...+....+...++++||+
T Consensus 361 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil 404 (441)
T PRK05769 361 KYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLL 404 (441)
T ss_pred hCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcE
Confidence 89999999999999999997653122334667788999999985
No 42
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-63 Score=613.94 Aligned_cols=365 Identities=17% Similarity=0.203 Sum_probs=299.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+ .++||+ ||+|++|+++|++++.... .+.++...+||++|++
T Consensus 606 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~g~--~~lGH~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~ 674 (1013)
T PRK06148 606 DPIKFVRGWGV--WLIDNRGR----AYLDCFNNV--CHVGHA-HPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTA 674 (1013)
T ss_pred CCceEEEeeec--EEEECCCC----EEEEcccCh--hhcCCC-CHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHH
Confidence 47889998886 59999999 999999984 789999 9999999999999874332 4578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |+||++ .+||+|+++|||+|.+++++|+.. ++.
T Consensus 675 ~~p~~-~~~v~f~nSGsEA~e~AlklA-r~~tGr------------------~~ii~~~~~YHG~t~~a~s~s~~~-~~~ 733 (1013)
T PRK06148 675 TLPDG-LTVAFFVNSGSEANSLALRLA-RAHTGQ------------------RDAIVLDHAYHGTTTELIDLSPYK-FNR 733 (1013)
T ss_pred hCCCC-cCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCccCCCcchhhcCchh-hcc
Confidence 88754 689999999999999999999 888764 489999999999999999998732 322
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ + ++. ..+++..++.|+++++ +|++.+ .+....+.+.+++.++...
T Consensus 734 ~----~----~~~-------~~~~~~~~~~p~~~~~--------~~~~~~---------~~~~~~~~~~l~~~i~~~~-- 779 (1013)
T PRK06148 734 K----G----GKG-------RPDHVEVAEVPDSYRG--------PERWPD---------AEHGRRFAESVAEQIAAMA-- 779 (1013)
T ss_pred c----C----CCC-------CCCCceEcCCCCcccc--------CCCCCh---------hhhHHHHHHHHHHHHHhhh--
Confidence 1 1 110 1123445666665542 244321 1223345566666665321
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 780 ~~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 780 AKGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred ccCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 23578999999998 999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||+++++++++.+... ..|++||+|||++||||+|+|++|++ +++.++++.+|++|+++|.++.++
T Consensus 859 G-~Plgav~~~~ei~~~~~~g-----~~~~~Tf~gnpla~aaa~a~L~~i~~----e~l~~~~~~~G~~l~~~L~~l~~~ 928 (1013)
T PRK06148 859 G-HPMGAVVTTREIADSFDNG-----MEYFNTFGGNPVSCAIGLAVLDIIED----EDLQRNALEIGNYLLAGLRELQDR 928 (1013)
T ss_pred C-cceEEEEEcHHHHhhccCC-----CccccCCCCCHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988532 24789999999999999999999998 566666777888888888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||.|+|++|||+.+... .+.+....+...|+++||+
T Consensus 929 ~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl 973 (1013)
T PRK06148 929 FDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGIL 973 (1013)
T ss_pred CCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeE
Confidence 999999999999999999865322 2235677899999999985
No 43
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.4e-62 Score=558.02 Aligned_cols=360 Identities=22% Similarity=0.269 Sum_probs=297.8
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||+||| +||||++|+|+.++||+ ||+|++|+++|++++.+.....+.++...+|+++|++.
T Consensus 23 p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADRAENA--EIWDKEGR----RYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEeeeec--EEEeCCCC----EEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 6788888886 59999999 99999999999999999 99999999999999877654456789999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC-CCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~-~~~~~ 534 (817)
+|.++.++|+|+||||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++. ..++.
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAATGR------------------SAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 87543479999999999999999999 788654 58999999999999999999874 22332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +++. .+++.++++|+.+++ . . ...+++.+++.+++.
T Consensus 157 ~--------~~~~--------~~~~~~~~~~~~~~g--------------------~---~-~~~~~~~l~~~~~~~--- 193 (425)
T PRK07495 157 G--------FGAM--------MPDVYHVPFPVELHG--------------------V---S-VEQSLAALDKLFKAD--- 193 (425)
T ss_pred C--------CCCC--------CCCeEEecCCccccc--------------------c---c-HHHHHHHHHHHHHhc---
Confidence 1 1111 134456666644311 0 0 112345667777531
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++||||+||+ |+++|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+||||+||||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++||+++++|+++++ +++.++++.++++|++++.++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~----~~l~~~~~~~g~~l~~~L~~l~~~~ 341 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGPG------GLGGTYGGNPLGIAAAHAVLDVIEE----EDLCERANQLGNRLKQRLASLRETV 341 (425)
T ss_pred -ccceEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7999999999999988532 4889999999999999999999988 4566666777777777887777889
Q ss_pred CCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++|||+++.. ..+.+....+...++++|++
T Consensus 342 ~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl 384 (425)
T PRK07495 342 PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLI 384 (425)
T ss_pred CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeE
Confidence 9999999999999999976531 11123467889999999985
No 44
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=2e-62 Score=557.98 Aligned_cols=352 Identities=18% Similarity=0.268 Sum_probs=286.4
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+. .+.++...+|+++|++
T Consensus 35 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 104 (428)
T PRK12389 35 APVVMERGKGA--YFYDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITEAAENGVLY---GTPTELEIEFAKMLKE 104 (428)
T ss_pred CCeEEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999987553 3578999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|. +++|+|+||||||||+|||+| |.|+++ .+||+|+++|||+|.+++++++...++.
T Consensus 105 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 163 (428)
T PRK12389 105 AIPS--LEKVRFVNSGTEAVMTTIRVA-RAYTGR------------------TKIIKFAGCYHGHSDLVLVAAGSGPSTL 163 (428)
T ss_pred hCCC--CcEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCChHHHHHhcCCccccc
Confidence 8873 689999999999999999999 788754 5899999999999999999987543321
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .|...+ + .++ ..+++.+ ++|||. +.+++.+++
T Consensus 164 ~--~~~~~~---~-~~~---~~~~~~~----------------~~~~d~------------------~~l~~~l~~---- 196 (428)
T PRK12389 164 G--TPDSAG---V-PKS---IAQEVIT----------------VPFNDI------------------EALKEALDK---- 196 (428)
T ss_pred C--CCCCCC---C-CCc---ccCceEE----------------cCCCCH------------------HHHHHHHHh----
Confidence 1 011000 0 000 0011112 224543 456667763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++++||||+||| ||++|+++||++||++|+++|++||++||+||||||| |||.+|+++++||+|||+|+||+||||
T Consensus 197 -~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG 273 (428)
T PRK12389 197 -WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG 273 (428)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+||+++++++++.+... ....|++||+|||++|||++|+|+++++++ +.++++.++++|++++.++.+++
T Consensus 274 -~Pi~av~~~~~i~~~~~~~---~~~~~~~T~~gnpl~~Aaala~L~~l~~~~----l~~~~~~~g~~l~~~L~~l~~~~ 345 (428)
T PRK12389 274 -LPIGAYGGRKDIMEQVAPL---GPAYQAGTMAGNPASMAAGIACLEVLQQEG----VYEKLDRLGAMLEEGILEAAEKH 345 (428)
T ss_pred -CceeEEeEHHHHHhhhccC---CCcccccCCccCHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999988532 124689999999999999999999998844 55556667777777777777889
Q ss_pred CCcceE-EeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRV-VALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~V-rG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+| ||.| |++++|.++... .+......+.+.++++||+
T Consensus 346 ~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 394 (428)
T PRK12389 346 GITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGIN 394 (428)
T ss_pred CCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcE
Confidence 988888 8888 889999865211 0113467889999999986
No 45
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-61 Score=552.53 Aligned_cols=366 Identities=23% Similarity=0.288 Sum_probs=297.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. ++||.||| +||||++|+|+.+|||+ ||+|++|+++|++++.+.......++...+|+++|+++
T Consensus 26 ~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 98 (433)
T PRK08117 26 NLPVVKGEGC--YYYGVDGK----EYLDFTSGIAVANVGHR-HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEI 98 (433)
T ss_pred CceEEeeeee--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 4788888886 59999999 99999999999999999 99999999999999877654446789999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC-CCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~-~~~~~ 534 (817)
+|.+ .++++|+||||||||+|||+| |.|+++ ++||+++++|||+|.+++++++. ..++.
T Consensus 99 ~~~~-~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 158 (433)
T PRK08117 99 TPGG-LDCFFFSNSGAEAIEGALKLA-KHVTKR------------------PYIISFTGCFHGRTLGALSVTTSKSKYRK 158 (433)
T ss_pred CCCC-CCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCcCHHHHhhcCCCccccc
Confidence 8643 689999999999999999999 778653 58999999999999999999864 22332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.+ ..+++.++|+|+.+++... .+.......+.+.+++.+++.
T Consensus 159 ~--------~~~--------~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~--- 202 (433)
T PRK08117 159 Y--------YQP--------LLGSVYQAPYPYCDRCPKG-----------------EDPEVCFLECLRDLESLFKHQ--- 202 (433)
T ss_pred c--------CCC--------CCCCcEEeCCCcccccccc-----------------CchhHHHHHHHHHHHHHHHhc---
Confidence 1 011 1134566777765432110 001122223446677777632
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
..++++||||+||| ||++|+++|+++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+||||
T Consensus 203 ~~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G 281 (433)
T PRK08117 203 VTPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG 281 (433)
T ss_pred cCCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC
Confidence 23568999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|+|++++|++++++++++ +.+.+++++++++.++..++
T Consensus 282 -~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~----~~~~~g~~l~~~L~~l~~~~ 350 (433)
T PRK08117 282 -LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKLLD----NANEMGAYALERLEVLKEKH 350 (433)
T ss_pred -CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 899999999999998743 2589999999999999999999998754444 45555666666666666789
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|++++|.++....+.+....+...++++||+
T Consensus 351 ~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 392 (433)
T PRK08117 351 PVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLL 392 (433)
T ss_pred CceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCE
Confidence 999999999999999998753122235667788999999984
No 46
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=2.5e-61 Score=548.38 Aligned_cols=383 Identities=27% Similarity=0.437 Sum_probs=303.5
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+.+..++|+||..... + ..+..+++++|. ++||.||+ +||||++|+|+.+|||+ ||+|++|+++|++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~-~-~~~~~~~~a~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~ 79 (427)
T TIGR00508 9 AFDQRHIWHPYTSMSS-P-LPVYPVESADGV--ELTLDDGR----RLIDGMSSWWAAIHGYN-HPRLNAAAQKQIDKMSH 79 (427)
T ss_pred hccccccccCccCccc-c-CCCceEEeeeee--EEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCC
Confidence 3445667888876521 1 234667888775 59999999 99999999999999999 99999999999999887
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
..+...+++...+|+++|++.+|.+ +++|+|++||+||||+|+|+| |.|++.+|. ++|.+||+|++
T Consensus 80 ~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~------------~~r~~il~~~~ 145 (427)
T TIGR00508 80 VMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE------------KNRQKFLTIRS 145 (427)
T ss_pred ccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCccEEEEEcC
Confidence 6654567899999999999998765 689999999999999999999 777654433 56789999999
Q ss_pred CccCCccccccccCCCC-CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCc
Q 003472 515 SYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (817)
Q Consensus 515 syHG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~ 593 (817)
+|||+|.+++++++... ++.. |.+ . .++...++.|... |..
T Consensus 146 ~yHG~t~~~~s~~~~~~~~~~~-----~~~---~--------~~~~~~~~~p~~~-----------~~~----------- 187 (427)
T TIGR00508 146 GYHGDTFGAMSVCDPENSMHSL-----YKG---Y--------LPEQIFAPAPQNR-----------FDE----------- 187 (427)
T ss_pred CcCCccHhhhcccCCccccccc-----ccc---c--------CCCCeEcCCCCcc-----------ccc-----------
Confidence 99999999999987532 2211 110 0 0112233333211 100
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc
Q 003472 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 594 ~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~ 673 (817)
.......+.+++.+++ .++++||||+|||+|++||+++++++||++|+++|++||++||+|||||||||+|++|
T Consensus 188 -~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~ 261 (427)
T TIGR00508 188 -EWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLF 261 (427)
T ss_pred -hhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccc
Confidence 0011223567777763 3568999999996699999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 674 a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
+++++|++|||+|+||+|+|||+|++++++++++++.+.... ...+.|++||++||++||+++++|++++++++.++
T Consensus 262 ~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~-- 338 (427)
T TIGR00508 262 ACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGE-AGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQ-- 338 (427)
T ss_pred hhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCC-CCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH--
Confidence 999999999999999999999999999999999999986431 12356999999999999999999999988555444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.++++|+++|.++ .+++.+.+|||.|+|++|+|.++ .....+.++++++||+
T Consensus 339 --~~~~~~~l~~~L~~l-~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gv~ 392 (427)
T TIGR00508 339 --VSAIENQLKRELSPL-RKNPVVKDVRVLGAIGVVEMYKP------VNVEELQKKFVEQGVW 392 (427)
T ss_pred --HHHHHHHHHHHHHHh-hcCCCEEeEeccccEEEEEECCc------cCHHHHHHHHHHCCeE
Confidence 455555555566554 45777889999999999999754 2346788999999986
No 47
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=3.9e-61 Score=546.27 Aligned_cols=361 Identities=22% Similarity=0.268 Sum_probs=297.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 22 CNFFAQSAENA--TLKDVEGN----EYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred CCeeEEecccc--EEEeCCCC----EEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 36788898886 59999999 99999999999999999 9999999999999987765545679999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|....++++|++|||||||+|||+| |++|++ .+||+|+++|||+|.+++++++.. .++
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 155 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIA-RAHTGR------------------PGVIAFSGGFHGRTYMTMALTGKVAPYK 155 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCCcccc
Confidence 876422579999999999999999999 777654 489999999999999999998742 233
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ ++++ .+++.++++|...++ .....+.+.+++.+++.
T Consensus 156 ~~--------~~~~--------~~~~~~v~~p~~~~~------------------------~~~~~~~~~l~~~~~~~-- 193 (421)
T PRK09792 156 IG--------FGPF--------PGSVYHVPYPSDLHG------------------------ISTQDSLDAIERLFKSD-- 193 (421)
T ss_pred cC--------CCCC--------CCCcEEcCCCccccc------------------------ccHHHHHHHHHHHHHhc--
Confidence 21 1221 123455666643210 00112346677777631
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..+++|||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+|+||+|||
T Consensus 194 -~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~ 271 (421)
T PRK09792 194 -IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAG 271 (421)
T ss_pred -cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcC
Confidence 13578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .|++||++||++|+||+++|++++++ ++.++.+.+++++++.+.++.++
T Consensus 272 G-~pigav~~~~~i~~~~~~~------~~~~T~~gnpl~~aaa~a~l~~l~~~----~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 272 G-MPLSGVVGNANIMDAPAPG------GLGGTYAGNPLAVAAAHAVLNIIDKE----SLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred C-CceEEEEEcHHHHhccCCC------CcCCCCCCCHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988532 48899999999999999999999884 55666667777787777777788
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC-CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN-AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~-~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||+|+|++|+|.++... .+......+...++++||+
T Consensus 341 ~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 384 (421)
T PRK09792 341 VPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLL 384 (421)
T ss_pred CCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcE
Confidence 999999999999999999754211 1124577889999999985
No 48
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=4.1e-61 Score=547.81 Aligned_cols=371 Identities=17% Similarity=0.194 Sum_probs=278.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHH--HHhccccCCCCCCChHHHHHHHHH
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELL 452 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q--~~~~~~~~~~~~~~~~~~eLae~L 452 (817)
.|+++++++|. |+||.||+ +||||+||+|+.++||+ ||+|++|+++| ...+.+.. .+.+++..+|+++|
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l 110 (464)
T TIGR00699 40 FLADYEKSRGN--YLVDVDGN----RLLDLYSQISSIPIGYN-NPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKIL 110 (464)
T ss_pred cceEEEecccC--EEEeCCCC----EEEEccCCHhhhcCCCC-CHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHH
Confidence 37788888886 59999999 99999999999999999 99999999995 44444432 35688889999998
Q ss_pred Hh----hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc--ccCC-----Ccccccc--ceEEEEEcCCccCC
Q 003472 453 LQ----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD--FLGK-----DTTEKCI--ELKVLALKGSYHGD 519 (817)
Q Consensus 453 ~~----~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~--~~~~-----~~~~~~~--r~~II~~~gsyHG~ 519 (817)
.+ .+|.+ +++|+|+||||||||+|||+| |.|++..|.... ..++ +..+.++ |.+||+|+++|||+
T Consensus 111 ~~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~ 188 (464)
T TIGR00699 111 KEGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGR 188 (464)
T ss_pred HHhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCc
Confidence 54 56643 689999999999999999999 777653221000 0000 0000122 45999999999999
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
|.+++++++...++.. ++ |. .+..++|+|+ +++.... +. .+.......
T Consensus 189 t~~als~t~~~~~~~~---------~~----~~----~~~~~~p~p~-~~~~~~~-----~~---------~~~~~~~~~ 236 (464)
T TIGR00699 189 LFGSLSTTRSKPIHKL---------DI----PA----FDWPQAPFPS-LKYPLEE-----HV---------KENAKEEQR 236 (464)
T ss_pred cHHHHHhcCCcccccc---------CC----CC----CCceecCCCC-ccccccc-----cc---------ccchhHHHH
Confidence 9999999986433321 00 10 1223455553 1110000 00 001122334
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
+++.+++.|++ .+++|||||+||| ||++|+++||++||++||++|++||++||+|||||||||||++|+++++|
T Consensus 237 ~l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~g 310 (464)
T TIGR00699 237 CLEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWN 310 (464)
T ss_pred HHHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcC
Confidence 56778888873 3567999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CC--CceeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CV--PDIACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~--PDivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
|+ |||+|+||+|| ||| + +.+ +.++.. ..+.|++||+|||++|||++|+|+++++ +++.+++
T Consensus 311 v~~~PDi~t~gK~lg~gG~-~----~~~-~~~~~~------~~~~~~~T~~gnp~~~aaa~a~L~~l~~----~~l~~~~ 374 (464)
T TIGR00699 311 LDDPPDMVTFSKKFQTAGY-F----FHD-PAFRPN------KPYRQFNTWMGDPSRALILREIIQEIKR----KDLLENV 374 (464)
T ss_pred CCCCCCEEEehhhhccCCc-c----ccc-hhccCC------CCcccccCCCCCHHHHHHHHHHHHHHHh----cCHHHHH
Confidence 97 99999999995 685 2 222 222111 1346999999999999999999999998 4566666
Q ss_pred HHHHHHHHHHHHHHHHcCC-CcceEE--eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 757 RILRELWDLELIQQISSHR-TVQRVV--ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p-~V~~Vr--G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++++|++++.++.+++| .|++|| |.|+|++|++.+. .....+...++++|++
T Consensus 375 ~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~------~~~~~i~~~~~~~Gvl 431 (464)
T TIGR00699 375 AHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE------AKRDKLLKKARNNGVN 431 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH------HHHHHHHHHHHHCCcE
Confidence 6777777777777778899 799999 9999999999532 3567899999999986
No 49
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=1.2e-60 Score=542.57 Aligned_cols=368 Identities=23% Similarity=0.280 Sum_probs=299.2
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. ++||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+....+++..+|+++|+
T Consensus 14 ~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 14 TLPVFAARAEGA--ILEDVDGN----RLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCeeEEeeeee--EEEeCCCC----EEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHH
Confidence 347889998886 59999999 99999999999999999 999999999999998876544466889999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PY 532 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~ 532 (817)
+.+|...+++|+|++|||||||+|||+| |.|+++ .+||+|+++|||+|.+++++|+.. .+
T Consensus 87 ~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 147 (420)
T TIGR00700 87 RIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR------------------PGVVAFDHGFHGRTNMTMALTAKVMPY 147 (420)
T ss_pred HhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CcEEEECCCcCCCcHHHHHhcCCCccc
Confidence 9887433579999999999999999999 788754 489999999999999999998753 22
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+. +++++ .+++.+++.|++++... .. .......+++.+++.+...
T Consensus 148 ~~--------~~~~~--------~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~- 192 (420)
T TIGR00700 148 KS--------GFGPF--------APEVYRAPLPYPYRDGL--------LD----------KQLSTDGELAAARAIFVID- 192 (420)
T ss_pred cc--------CCCCC--------CCCcEEeCCCccccccc--------cc----------cchhHHHHHHHHHHHHHhh-
Confidence 22 11221 12345666665553210 00 0011122345677666411
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.+++++||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++
T Consensus 193 --~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~ 269 (420)
T TIGR00700 193 --VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLA 269 (420)
T ss_pred --cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeecccc
Confidence 24679999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+|++++++++++.+... .|++||++||++|++++|+|+++++ +++.++.+.+++++++++.++.+
T Consensus 270 ~G-~pig~v~~~~~i~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~l~~----~~~~~~~~~~g~~l~~~L~~l~~ 338 (420)
T TIGR00700 270 DG-LPLSGVTGRAEIMDAPAPG------GLGGTYAGNPLACAAALAVLAIIES----EGLIERARQIGRLVTDRLTTLKA 338 (420)
T ss_pred CC-cceEEEEecHHHHhhcCCC------CcCCCCCcCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHh
Confidence 99 7999999999999988432 4889999999999999999999988 45566666777777777777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++|.+.+|||.|+|++++|.++.. ..+.+....+...++++||+
T Consensus 339 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 383 (420)
T TIGR00700 339 VDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLL 383 (420)
T ss_pred hCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeE
Confidence 899999999999999999975421 11234567888889999985
No 50
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=2e-60 Score=543.62 Aligned_cols=387 Identities=18% Similarity=0.140 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHhhccchhhhcCcccc--cCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCC
Q 003472 336 KNIMLLAYSERIQRLCDMPKRAGELFWW--PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGP 413 (817)
Q Consensus 336 ~~~l~~~~~~r~~~~~~~~~~~~~~l~~--p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~L 413 (817)
.+.+...+.++..++..+.+++.+.+.. |+.....++...|+++++++|.+ +||.||| +||||.+|+|+.+|
T Consensus 16 ~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~--v~D~DG~----~yiD~~~g~g~~~l 89 (453)
T PRK07046 16 LARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGAR--FTDVDGH----RYDDFCLGDTGAMF 89 (453)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCE--EEeCCCC----EEEEeccccccccc
Confidence 3344556666777788888888887755 23332233334688999988865 9999999 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 003472 414 DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~ 493 (817)
||+ ||+|.+|+++|+++..+. ...++...+|||+|++.++ .++|+|+|||+||||.|||+| |.||+|
T Consensus 90 Gh~-~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~TGr----- 156 (453)
T PRK07046 90 GHS-PAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAVTGR----- 156 (453)
T ss_pred CCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHhhCC-----
Confidence 999 999999999999986543 3568999999999999885 689999999999999999999 888764
Q ss_pred cccCCCccccccceEEEEEcCCccCCcccccccc--CCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhc
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~ 571 (817)
.+||.|+|+|||++.+++... +...++. .+. +. |. ...+....
T Consensus 157 -------------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~-----~~~--g~----~~-~~~~~~~~---------- 201 (453)
T PRK07046 157 -------------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP-----GLL--GQ----VH-DLTATTRV---------- 201 (453)
T ss_pred -------------CEEEEECCCCCCCcHHhHhhccCCCCCCCC-----CCC--CC----Cc-cccCceEe----------
Confidence 589999999999987766532 2111111 000 00 00 00011111
Q ss_pred ccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHh
Q 003472 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (817)
Q Consensus 572 ~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~ 651 (817)
++|||. +.+++.+. .+++||||+||| |+++|+++|+++||++||++|+
T Consensus 202 ------~~~nd~------------------~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr~lc~ 249 (453)
T PRK07046 202 ------VEFNDL------------------AALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALRELTR 249 (453)
T ss_pred ------eCCCCH------------------HHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHHHHHH
Confidence 236654 45666663 367999999998 9999999999999999999999
Q ss_pred hcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCc---cceeecccCCCC
Q 003472 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK---LKALLHGHSYSA 728 (817)
Q Consensus 652 ~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~---~~~~~h~~T~~g 728 (817)
+||++||+||||| | |+|..++++++||+|||+|+||+|||| +|+||+++++++++.+..... ...+.|++||+|
T Consensus 250 ~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~g 326 (453)
T PRK07046 250 RYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSA 326 (453)
T ss_pred HhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcc
Confidence 9999999999999 5 677777888999999999999999999 799999999999998853110 123468999999
Q ss_pred CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCC---------
Q 003472 729 HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG--------- 799 (817)
Q Consensus 729 nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~--------- 799 (817)
||++|||++++|++++++++ .++++.++++|++++.+++++++.+.+|||.|+|++++|.++. ...
T Consensus 327 npl~~aa~~a~L~~l~~~~~----~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~ 401 (453)
T PRK07046 327 NALAMAAMRATLAEVMTEAA----YAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTP-PRNGAEAAAALD 401 (453)
T ss_pred cHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCC-CCCHHHHhcccC
Confidence 99999999999999988544 5555566666777787888889999999999999999996542 221
Q ss_pred cchHHHHHHHHHHcCCC
Q 003472 800 YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 800 ~~~~~~~~~~~l~~Gv~ 816 (817)
.+....+...|+++||+
T Consensus 402 ~~~~~~~~~~~~~~Gv~ 418 (453)
T PRK07046 402 PELEAALHLYLLNRGVL 418 (453)
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 23456678889999986
No 51
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-60 Score=542.40 Aligned_cols=360 Identities=21% Similarity=0.275 Sum_probs=295.4
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 23 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAERAENA--TLWDVEGR----EYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEeeecC--EEEeCCCC----EEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 6788998886 59999999 99999999999999999 99999999999999887655446789999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~~ 534 (817)
+|.+.+++++|+||||||||+|||+| |+||+| ++||+|+++|||+|.+++++|+.. .++.
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAYTGR------------------PGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 87433579999999999999999999 788754 589999999999999999998752 2332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ ++++ .+++.++++|+..++ . ....+.+.+++.+++.
T Consensus 157 ~--------~~~~--------~~~~~~~~~p~~~~~-----------~-------------~~~~~~~~l~~~~~~~--- 193 (421)
T PRK06777 157 G--------FGPF--------PGSIFHALYPNELHG-----------V-------------SVEEALSSVERLFKAD--- 193 (421)
T ss_pred C--------CCCC--------CCCcEEcCCCccccC-----------c-------------CHHHHHHHHHHHHHhc---
Confidence 1 1111 123445555543210 0 0112345677777531
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++||||+||+ |+++|+.++|++|+++|+++|++||++||+|||+|||||+|++|++++++++||++|+||++|||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++++++|++++++ ++.++.+.++++|.++|.++.+++
T Consensus 273 -~pigav~~~~~i~~~~~~~------~~~~T~~~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l~~~~ 341 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAPG------GLGGTYAGNPLAVAAALAVLDVIAEE----KLCQRALILGAHLVEVLEKAKASC 341 (421)
T ss_pred -CceEEEEEcHHHHhccCCC------CCCCCCCcCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7999999999999988532 47899999999999999999999884 555566666777777777777789
Q ss_pred CCcceEEeeeeEEEEEEecCCC-CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC-NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++++|.++.. ..+.+....+...++++||+
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 384 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLL 384 (421)
T ss_pred CCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeE
Confidence 9999999999999999976421 11234567788889999985
No 52
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=7.7e-61 Score=542.45 Aligned_cols=353 Identities=21% Similarity=0.279 Sum_probs=286.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|+++..+.......+++..+|+++|++
T Consensus 17 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 17 FPTVFEKAKGS--TLWDEDGK----EYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred CCceEEecccC--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 9999999999999876654334568999999999999
Q ss_pred hc--CCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~--~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.. |.+...+++| +||||||||+|||+| |.|++ |++||+|+++|||+|.+++++++...
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~als~~~~~~ 150 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLA-RKVTG------------------RSNVVSFTNAFHGMTLGSLSVTGNRF 150 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHH-hhhcC------------------CCeEEEECCCcCCchHHHHHhcCCcc
Confidence 74 3222236666 599999999999999 77764 45899999999999999999998655
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. .++ +. .++.++|+|+... + ...+.+.+++.+++.
T Consensus 151 ~~~~--------~~~----~~----~~~~~~p~~~~~~----------------------~----~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 151 KRQG--------AGV----PL----SNVSRMPYDGYLG----------------------G----DVDTIAYFEKLLEDS 188 (412)
T ss_pred cccC--------CCC----CC----CCeEECCCCCccc----------------------c----chhHHHHHHHHHHhc
Confidence 4432 111 11 1234444442110 0 011245677777641
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.+++||||+||| ||++|+++||++|+++|+++|++||++||+|||||||||||++|++++++++|||+|+||+|
T Consensus 189 ~--~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~l 265 (412)
T TIGR02407 189 S--SGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSI 265 (412)
T ss_pred c--CCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhc
Confidence 0 12367999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHH-hcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 692 TG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 692 gg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~-l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
|| | +|+|++++++++ +.+.. ..|++||++||++|+++.++|++ +++ +++.++++.++++|++++.+
T Consensus 266 g~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~~~i~~----~~l~~~~~~~g~~l~~~l~~ 333 (412)
T TIGR02407 266 SGYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEYYWSD----DAFEKAVQRKSEIIQERLDR 333 (412)
T ss_pred cCCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHH
Confidence 99 8 899999999986 65532 25899999999999999999995 777 45666666777777777777
Q ss_pred HHHcCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++| .+.+|||.|+|++++|.+. +....+...++++||+
T Consensus 334 l~~~~~~~~~~vrg~Gl~~~l~l~~~------~~~~~~~~~~~~~Gv~ 375 (412)
T TIGR02407 334 IVAEYPELIKQVRGRGLMQGIECGDG------DLAGKIAKAAFENGLI 375 (412)
T ss_pred HHhhCCCceEeeecceeEEEEEecCh------HHHHHHHHHHHHCCCE
Confidence 778888 6899999999999999764 4567889999999985
No 53
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-60 Score=589.84 Aligned_cols=364 Identities=17% Similarity=0.178 Sum_probs=292.1
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++++ .++||+ ||+|++|+++|++++.+.+ .+.++...+|+++|++
T Consensus 567 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~~~--~~lGh~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~ 635 (972)
T PRK06149 567 DPPQIERGWRH--HLFDMAGR----SYLDMVNNV--TVLGHG-HPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAA 635 (972)
T ss_pred CCCeEEEeeee--EEEeCCCC----EEEECCCCc--cccCCC-CHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHH
Confidence 46688888885 59999999 999999985 479999 9999999999999876543 2467899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+|.+ +++|+|+||||||||+|||+| |.++++ .+||+++++|||+|.+++++++....+.
T Consensus 636 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~ga~~~s~~~~~~~ 695 (972)
T PRK06149 636 LAPDG-LDTVFLVNSGSEANDLAIRLA-WAASGR------------------RDVVSVLEAYHGWTVATDAVSTSIADNP 695 (972)
T ss_pred hCCCC-cCEEEEeCCchHHHHHHHHHH-HHhcCC------------------CeEEEEeCCCCCcChhHhhhcCCccccc
Confidence 98754 689999999999999999999 788754 5899999999999999999876422111
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ++.. ..+++..++.|+.+++. |++. +....|.+.+++.++...
T Consensus 696 ~----~~~~-----------~~~~v~~~~~p~~~~~~--------~~~~-----------~~~~~~~~~~~~~l~~~~-- 739 (972)
T PRK06149 696 Q----ALET-----------RPDWVHPVESPNTYRGR--------FRGA-----------DSAADYVRDVVAQLEELD-- 739 (972)
T ss_pred c----ccCC-----------CCCCeEEeCCCcccCCc--------CCCc-----------ccHHHHHHHHHHHHHHHh--
Confidence 0 1000 01234455666555321 2211 001123334444443211
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ +|+++++||+|||+|+||+|||
T Consensus 740 ~~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~ 818 (972)
T PRK06149 740 ASGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN 818 (972)
T ss_pred hcCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC
Confidence 24678999999998 999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||+++++++++.+.... .+.+||+|||++||||+|+|+++++ +++.++++.+|++|+++|.++.++
T Consensus 819 G-~Pl~av~~~~~i~~~~~~~~-----~~~sT~~gnP~~~aaala~L~~i~~----e~l~~~~~~~G~~l~~~L~~l~~~ 888 (972)
T PRK06149 819 G-HPLGAVITRREIAEALEAEG-----YFFSSTGGSPVSCRIGMAVLDVLRE----EKLQENARRVGDHLKARLEALADR 888 (972)
T ss_pred C-eeeEEEEEcHHHHhhhccCC-----cccCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 79999999999999886421 3568999999999999999999998 567777777888888888888889
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|+|++|||+|+|+||||+++..+ .+.+....+...|+++||+
T Consensus 889 ~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl 933 (972)
T PRK06149 889 HPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVI 933 (972)
T ss_pred CCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeE
Confidence 999999999999999999864212 1234577889999999985
No 54
>PRK08297 L-lysine aminotransferase; Provisional
Probab=100.00 E-value=1.6e-60 Score=543.61 Aligned_cols=368 Identities=17% Similarity=0.218 Sum_probs=280.1
Q ss_pred EEEeecCceeEEEeC-ccCccccceeeccccccccCCCCCCCHHHHH--HHHHHHHhccc--cCCCCCCChHHHHHHHHH
Q 003472 378 VIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELL 452 (817)
Q Consensus 378 vi~~~~G~~~~l~D~-dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~--Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L 452 (817)
++++++|. |+||. ||+ +||||++|+|+.++||+ ||+|++ |+++|++++.+ .....+.+++..+|+++|
T Consensus 29 ~i~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l 101 (443)
T PRK08297 29 DLERSQGS--YLVDARTGR----RYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTF 101 (443)
T ss_pred EEEeccCC--EEEECCCCC----EeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHH
Confidence 46777775 59995 999 99999999999999999 999999 99999998653 222346789999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccccceEEEEEcCCccCCccccccccC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~ 528 (817)
++..+.+.+++|+|+||||||||+|||+| |+|+.+ +|. ..++|++||+|+++|||+|.+++++++
T Consensus 102 ~~~~~p~~~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~----------~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 102 ARVLGDPELPHLFFVDGGALAVENALKVA-FDWKSRKNEARGI----------DPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HhhcCCCCCCEEEEeCchHHHHHHHHHHH-HHHhhccccccCC----------CCCCCceEEEECCCcCCcchhhhhhcC
Confidence 99872223689999999999999999999 777642 221 002478999999999999999999997
Q ss_pred CCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHH
Q 003472 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L 608 (817)
...++.. ++. .... .+++.|... .++.+.+ ..+...+...+++.+++.+
T Consensus 171 ~~~~~~~----~~~----~~~~---------~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~i 219 (443)
T PRK08297 171 TDPRKTA----RFP----KFDW---------PRIDNPKLR---------FPLPGED-----LEEVEALEAEALAQARAAF 219 (443)
T ss_pred Ccccccc----cCC----CCCc---------cccCCCCCC---------CCCcccc-----cchhhHHHHHHHHHHHHHH
Confidence 5433221 111 0000 011112110 0000000 0001122233456778888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc
Q 003472 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG 688 (817)
Q Consensus 609 ~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg 688 (817)
++ +++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+|
T Consensus 220 ~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g 293 (443)
T PRK08297 220 ER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG 293 (443)
T ss_pred Hh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence 73 4689999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 689 KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 689 K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
|++ |++++++++++.+.....-. ....|++||++||++|++|+++|++++++ ++.++++.++++|++++.
T Consensus 294 K~l-----~~~a~l~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~ 363 (443)
T PRK08297 294 KKT-----QVCGIMAGRRVDEVEDNVFA-VSSRINSTWGGNLVDMVRARRILEVIEED----GLVENAARQGEYLLARLE 363 (443)
T ss_pred ccc-----cccceecchHHHHhhhhhcc-CccccCCCCCccHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHH
Confidence 997 45677777776543311000 01248999999999999999999999884 555666677777777787
Q ss_pred HHHHcCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+++|.+. +|||.|+|++|+|.+. +....+.+.++++||+
T Consensus 364 ~l~~~~~~~~~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gvl 406 (443)
T PRK08297 364 ELAAEFPAVVSNVRGRGLMCAFDLPTT------ADRDEVIRRLWEEGVL 406 (443)
T ss_pred HHHHHCCCcceeeeccceEEEEEecCH------HHHHHHHHHHHHCCEE
Confidence 7778899776 9999999999999653 3567788999999985
No 55
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.9e-60 Score=539.67 Aligned_cols=366 Identities=21% Similarity=0.264 Sum_probs=298.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.......+++..+||++|++
T Consensus 23 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 95 (443)
T PRK08360 23 YPLVPVKAENA--KVWDIEGN----EYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE 95 (443)
T ss_pred CCceEEeccee--EEEECCCC----EEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 47788888775 59999999 99999999999999999 9999999999999988766544568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
.+|.+ +++|+|+||||||||+|||+| |+||+| .+||++.++|||+|.+++++++.. .++
T Consensus 96 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 96 IAPGD-NPKVSFGLSGSDANDGAIKFA-RAYTKR------------------RKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred hCCCC-CCEEEEcCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 98754 579999999999999999999 788754 589999999999999999998742 222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++ .+++.++++|+.++.. |.+ +..++...+.+.+++.+++.
T Consensus 156 ~~--------~~~---------~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~l~~~-- 199 (443)
T PRK08360 156 AL--------VGE---------LSDVHYIPYPDCYRCP--------FGK---------EPGSCKMECVEYIKEKFEGE-- 199 (443)
T ss_pred cC--------CCC---------CCCcEEEeCCcccccc--------ccC---------chhhhHHHHHHHHHHHHHhc--
Confidence 21 111 1234556666554311 110 01122233456677777631
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||+ |+.+|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++||++|+||++|+
T Consensus 200 -~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~ 277 (443)
T PRK08360 200 -VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGG 277 (443)
T ss_pred -cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccC
Confidence 23578999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+.. ..|++||++||++|++++++|+++++++ +.++++.++++|++++.++.++
T Consensus 278 G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~~----l~~~~~~~g~~l~~~L~~l~~~ 346 (443)
T PRK08360 278 G-LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEKN----LLKRAEKLGNYTKKRLEEMKKK 346 (443)
T ss_pred C-ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHh
Confidence 9 899999999999998853 2488999999999999999999998844 5555666667777777777778
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.|++|||+|+|++|||+++... .++.....+...++++|++
T Consensus 347 ~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 391 (443)
T PRK08360 347 HELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLI 391 (443)
T ss_pred CCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeE
Confidence 999999999999999999865311 2234567888999999985
No 56
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=100.00 E-value=1.3e-60 Score=530.66 Aligned_cols=321 Identities=21% Similarity=0.257 Sum_probs=267.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+... .+.+++..+|+++|+
T Consensus 5 ~~~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~ 76 (364)
T PRK04013 5 RKRLRLVRGEGI--YVWDSQGR----RYLDLIAGIGVNVLGHN-HPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELS 76 (364)
T ss_pred CCCccEEEeecC--EEEECCCC----EEEEcccChhhccCCCC-CHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHH
Confidence 346788888886 59999999 99999999999999999 99999999999999876543 467999999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++.+ .++++|+||||||||+|||+| |.++++ .+||+++++|||+|.+++++++.+.++
T Consensus 77 ~~~~---~~~v~~~~SGseA~e~Alkla-r~~~gr------------------~~Ii~~~~syHG~t~~~ls~~~~~~~~ 134 (364)
T PRK04013 77 KWVN---YEYVYMGNSGTEAVEAALKFA-RLYTGR------------------KEIIAMTNAFHGRTMGALSATWKPKYR 134 (364)
T ss_pred hhcC---CCEEEEeCchHHHHHHHHHHH-HHHhCC------------------CEEEEECCccccCchhhccCCCCcccc
Confidence 9885 579999999999999999999 777653 589999999999999999999876555
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ +.+.+ +++.+++ |||. +.+++.+.
T Consensus 135 ~~--------~~p~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 160 (364)
T PRK04013 135 ED--------FEPLV--------PGFKHIP----------------FNDV------------------EAAKEAIT---- 160 (364)
T ss_pred cC--------CCCCC--------CCcEEec----------------CCCH------------------HHHHHHhc----
Confidence 43 11110 1222222 4432 33555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
+++||||+||+ ||+||++++|++||++||++|++||++||+||||||| |||++|+++++|++|||+|+||+|||
T Consensus 161 ----~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lgg 234 (364)
T PRK04013 161 ----KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGN 234 (364)
T ss_pred ----CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccC
Confidence 47999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+||++.++++.. ..|++||+|||++||||+++|++++++++.+++ +.+ | .++ .
T Consensus 235 G-~P~~a~~~~~~~~~----------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~----~~~---l----~~l--~ 290 (364)
T PRK04013 235 G-VPVSLTLTNFDVER----------GKHGSTFGGNPLACKAVAVTLRILRRERLVEKA----GEK---F----IEI--K 290 (364)
T ss_pred C-ceeEEEEecccccC----------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHH----HHH---H----HHh--c
Confidence 9 89999999987621 258999999999999999999999996555554 332 2 122 2
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|.|++|||+|+|+||||.++ ...+.+.|+++|++
T Consensus 291 ~~~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~~~Gll 325 (364)
T PRK04013 291 GERVVTTRGRGLMIGIVLKKP--------VGKYVEELQNRGYL 325 (364)
T ss_pred cCcceeeeeCcEEEEEEeCCc--------HHHHHHHHHhCCcE
Confidence 378999999999999999643 35688999999985
No 57
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=5e-60 Score=541.89 Aligned_cols=367 Identities=22% Similarity=0.296 Sum_probs=297.8
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 37 ~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQSANGA--LVTDVDGN----QYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEecccc--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 5788888886 59999999 99999999999999999 99999999999999877654446789999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~~ 534 (817)
+|.++.++|+|+||||||||+|||+| |+||+| .+||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKYTKR------------------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 87543369999999999999999999 888754 589999999999999999998742 2332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ ++++ .+++.++|+|+.+++.. . ...+...+.+.+.+++.++..
T Consensus 171 ~--------~~~~--------~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~--- 214 (451)
T PRK06918 171 G--------FGPF--------APEVYKAPFPYEYRRPE--------G---------LTEEQYDDFMIEEFKNFFISE--- 214 (451)
T ss_pred c--------CCCC--------CCCcEEcCCCccccccc--------c---------CchHHHHHHHHHHHHHHHHhh---
Confidence 1 1111 12345666665543210 0 001122333445566555321
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
..++++||||+||+ ||+||+++|+++|+++|+++|++||++||+|||+|||||+|++|++++++++||++++||++++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++|+++|+++++ +++.++++.+++++.+++.++.+++
T Consensus 294 -~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~----~~~~~~~~~~g~~l~~~l~~l~~~~ 362 (451)
T PRK06918 294 -VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEK----ENLNDRAIELGKVVMNRFEEMKNKY 362 (451)
T ss_pred -CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999998843 24889999999999999999999988 4555566677777777777777788
Q ss_pred CCcceEEeeeeEEEEEEecCCC--CCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGC--NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~--~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|+++++.++.. ..+.+....+...++++||+
T Consensus 363 ~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvl 406 (451)
T PRK06918 363 NCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLL 406 (451)
T ss_pred CCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeE
Confidence 9999999999999999974321 11224577888899999985
No 58
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-60 Score=519.72 Aligned_cols=376 Identities=20% Similarity=0.262 Sum_probs=305.9
Q ss_pred hccchhhhcCcc----cccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHH
Q 003472 350 LCDMPKRAGELF----WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (817)
Q Consensus 350 ~~~~~~~~~~~l----~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai 425 (817)
+.++.+++.+.+ +.|....+.++ ..|+++++++|.+ +||+||| +|||++.+|+...|||+ ||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~g~Ga~--l~DvDGn----~YIDy~~~~Gp~ilGH~-~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIERGKGAY--LTDVDGN----EYIDYVLGWGPLILGHA-HPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEeccCCe--EEeCCCC----EeeehhccCcccccCCC-CHHHHHHH
Confidence 334445555544 33444433332 4799999999975 9999999 99999999999999999 99999999
Q ss_pred HHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCcccccc
Q 003472 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (817)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~ 505 (817)
++|+++.... +.+++..+++|+.|++.+|. .++|.|+|||+||+..|||+| |.||+|
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~TgR----------------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYTGR----------------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHhhCC-----------------
Confidence 9999997543 35789999999999999985 689999999999999999999 899875
Q ss_pred ceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcch
Q 003472 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (817)
Q Consensus 506 r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~ 585 (817)
.+||.|+|+|||+....+--.+...-... .|. ....|......+. -++|||.
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t~g--------------~p~--------s~Gvp~~~a~~ti---~~~yND~-- 187 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAATLG--------------SPS--------SPGVPADVAKHTL---VLPYNDL-- 187 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCcccCC--------------CCC--------CCCCChhhhccEE---EecCCCH--
Confidence 59999999999999887654432111000 010 0112222222222 2468986
Q ss_pred hhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec
Q 003472 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (817)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG 665 (817)
+.+++++++ .+++|||||+||| +|..|+++|.++|+++||+||++||++||+|||+||
T Consensus 188 ----------------~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 188 ----------------EALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred ----------------HHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 678888884 5789999999998 999999999999999999999999999999999999
Q ss_pred cccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 666 fGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
| |.+..+++++|||+||+.|+||.+||| +|+||+.+++++|+.+... .+..+++||+|||++++|++++|+.+++
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p~---g~vyqaGT~sgnplamaAG~atl~~l~~ 320 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLEELMT 320 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCCC---CCccccCCCCCcHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999 8999999999999987543 3567999999999999999999999987
Q ss_pred -cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCc--------chHHHHHHHHHHcCCC
Q 003472 746 -PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--------CLIELFLYNFLTTGMH 816 (817)
Q Consensus 746 -~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~--------~~~~~~~~~~l~~Gv~ 816 (817)
++.++++.+.+++| .+++.+.++++.+...|.+.|.|+.|-|.+.+ ...| +....|++.++++||+
T Consensus 321 ~~~~y~~l~~~~~~L----~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~-~~n~~da~~sd~~~~~~~~~~~l~~GV~ 395 (432)
T COG0001 321 EEGVYERLDALGERL----AEGLRAAAERHGIPLTVNRVGSMFGIFFTEEG-VRNYADAKRSDVERFAKFFHHLLNRGVY 395 (432)
T ss_pred cccHHHHHHHHHHHH----HHHHHHHHHHhCCCeEEeeecceEEEEecCCC-CCCHHHHHhhchHHHHHHHHHHHhCCcc
Confidence 45677776655554 55778888899888999999999999998854 4444 4677888999999997
No 59
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=3.5e-60 Score=535.81 Aligned_cols=347 Identities=22% Similarity=0.305 Sum_probs=289.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+... ...+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~ 93 (408)
T PRK04612 22 RQVVLERGQGS--RVWDDQGR----EYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT 93 (408)
T ss_pred CCceEEEeeeC--EEEECCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788898886 59999999 99999999999999999 99999999999999876643 3568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..|. .++|+|++|||||||+|||+| |+|+..+|. .++|.+||+|+++|||+|.+++++++.+.++.
T Consensus 94 ~~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-----------~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 94 ASRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGR-----------PADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred hCCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCC-----------CCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 8763 479999999999999999999 788754432 03577999999999999999999998765554
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+. | +++..+ +|+|. +.+++.++
T Consensus 160 ~-----~---~~~---~-----~~~~~~----------------~~~d~------------------~~l~~~~~----- 184 (408)
T PRK04612 160 G-----Y---EPL---P-----GGFRYV----------------DFNDV------------------EALEAAMA----- 184 (408)
T ss_pred C-----C---CCC---C-----CCceEc----------------CCCCH------------------HHHHHhhC-----
Confidence 2 1 100 0 111122 24442 34555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++||||+||+ |++||+++++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 185 --~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 185 --GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred --CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 368999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++++++|++++++ ++.++++.++++|++++.++.+++
T Consensus 262 -~piga~~~~~~~~~~~~~~------~~~~t~~~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~l~~l~~~~ 330 (408)
T PRK04612 262 -FPIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASP----QIAANVARQSAALRAGLEALNAEF 330 (408)
T ss_pred -CceEEEEECHHHHhhhcCC------CcCCCCCCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8999999999998887532 58899999999999999999999884 455556666677777777777889
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.|++|||+|+|++|+|.++. .+....+...++++|++
T Consensus 331 ~~i~~vrg~Gl~~~i~~~~~~----~~~a~~i~~~l~~~Gvl 368 (408)
T PRK04612 331 GVFAQVRGRGLMLGAVLAPAH----AGQAGAILDLAAEHGLL 368 (408)
T ss_pred CCeeeeeccceEEEEEecCch----hhHHHHHHHHHHHCCeE
Confidence 999999999999999997531 14567788899999985
No 60
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=9.7e-60 Score=534.88 Aligned_cols=350 Identities=21% Similarity=0.303 Sum_probs=280.9
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|+++.... ...++...+|+++|+
T Consensus 34 ~~p~~i~~a~G~--~l~D~dG~----~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~ 103 (433)
T PRK00615 34 ITPPIVSSASGD--IFIDSLGK----TFIDFCGSWGSLIHGHS-HPKICDAIQQGAERGTSY---GLTSEQEILFAEELF 103 (433)
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Confidence 357889998886 59999999 99999999999999999 999999999999986532 356899999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc---cccccccCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPS 530 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t---~galslt~~~ 530 (817)
+.+|.+ .++|+|++|||||||+|||+| |+||+| .+||+|+++|||+| .+++++++..
T Consensus 104 ~~~~~~-~~~v~f~~SGsEA~e~AiklA-r~~tgr------------------~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 104 SYLGLE-DHKIRFVSSGTEATMTAVRLA-RGITGR------------------SIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred HhCCCC-cCEEEEeCchHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCCcccCcccccCCCC
Confidence 988743 479999999999999999999 888754 58999999999998 6777777532
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
....+ ...++ .++. +. .+. ++|||. +.+++.|++
T Consensus 164 ~~~~~------~~~~~--~~~~----~~--~~~--------------~~~~d~------------------~~l~~~l~~ 197 (433)
T PRK00615 164 LDTLT------HLVDT--DLAH----PL--TLS--------------LPYNDF------------------QIFQTVMNS 197 (433)
T ss_pred cCcCC------CCCCC--CCCC----CC--eEe--------------CCCCCH------------------HHHHHHHHh
Confidence 11100 00000 0000 00 000 235543 456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccc
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~ 690 (817)
.++++||||+||| |+++|+++|+++|+++|+++|++||++||+||||||| |+|.+|+++++|++|||+|+||+
T Consensus 198 -----~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~ 270 (433)
T PRK00615 198 -----LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKI 270 (433)
T ss_pred -----cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccc
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 691 LTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 691 LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
|||| +|+|++++++++++.+... ..+.|++||++||++|||++++|+++++++++++ .+.++++|++++.+.
T Consensus 271 lggG-~p~~av~~~~~i~~~~~~~---~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~----~~~~g~~l~~~l~~~ 342 (433)
T PRK00615 271 LGGG-LPAAAVVAHKSIMDHLAPE---GTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQ----LSTLEQNFLSPIEEM 342 (433)
T ss_pred ccCC-cceeeeeecHHHHhhhcCC---CCcccCCCCcccHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHH
Confidence 9999 7999999999999988532 2346889999999999999999999988554444 455555666666666
Q ss_pred HHc--CCCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 771 ISS--HRTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~--~p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+++ +| +.++| .|+|++|+|.++... .+.+....|...++++||+
T Consensus 343 ~~~~g~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 395 (433)
T PRK00615 343 IRSQGFP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVY 395 (433)
T ss_pred HHHcCCC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCee
Confidence 665 45 88889 999999999865311 0124566899999999986
No 61
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=3.9e-60 Score=538.85 Aligned_cols=353 Identities=21% Similarity=0.271 Sum_probs=283.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.+|||+ ||+|.+|+++|+++..+.......+++..+|+++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 21 FPVVFDKAKGS--WLYDEDGK----EYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred CCccEEeeecC--EEEeCCCC----EeeecccchhhccCCCC-CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 9999999999999876654444568999999999999
Q ss_pred hc--CCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 455 ~~--~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
.+ +.+...+++| +||||||||+|||+| |+|++ |.+||+|+++|||+|.+++++|+...
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tg------------------r~~ii~~~~~yHG~t~~~ls~~~~~~ 154 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKVTG------------------RTNIVAFTNGFHGMTLGSLAVTGNSH 154 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHhcC------------------CCeEEEECCccCCccHHHHHhcCCcc
Confidence 64 3222236766 489999999999999 78865 35899999999999999999998654
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
++.. +++ +. .++.++|+|+.+++ + ....+.+++.|++.
T Consensus 155 ~~~~--------~~~----~~----~~~~~~p~~~~~~~------------------------~--~~~~~~l~~~l~~~ 192 (425)
T PRK09264 155 KRQG--------AGV----PL----NNVTRMPYDGYFGG------------------------D--VDTLAYLEKLLEDS 192 (425)
T ss_pred cccC--------CCC----CC----CCeEEeCCCCcccc------------------------c--hhHHHHHHHHHHhc
Confidence 4432 111 11 23455665543210 0 01135677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccccc
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~L 691 (817)
. .+.+++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+|
T Consensus 193 ~--~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l 269 (425)
T PRK09264 193 S--SGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI 269 (425)
T ss_pred c--CCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEecccc
Confidence 0 12357999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHH-HHhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 692 TG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSI-KWFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 692 gg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L-~~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
|+ | +|+|++++++++ +.+.. ..|++||++||++|++++++| ++++++ ++.++++.++++|++++.+
T Consensus 270 ~~~G-~pigav~~~~~i-~~~~~------~~~~~T~~gnp~~~aaa~a~l~~~~~~~----~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 270 SGYG-LPMALVLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEEYWSDD----AFEKEVKAKGELVRERLEE 337 (425)
T ss_pred CCCc-cceEEEEEchhh-hccCC------CccCCCCCCCHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHH
Confidence 99 7 899999999997 44422 248899999999999999999 677674 4555555666666666666
Q ss_pred HHHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++|. +.+|||.|+|++++|.+. +....+...++++||+
T Consensus 338 l~~~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~~~Gv~ 379 (425)
T PRK09264 338 IAAKYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAFENGLI 379 (425)
T ss_pred HHHhCCCceecceecccEEEEEecCh------HHHHHHHHHHHHCCCE
Confidence 6677885 589999999999999754 4667889999999985
No 62
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=4.7e-60 Score=533.07 Aligned_cols=323 Identities=23% Similarity=0.280 Sum_probs=267.0
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||+||+|++++||+ ||+|++|+++|++++.+... ...+++..+|+++|.+
T Consensus 18 ~~~~~~~~~G~--~~~d~dG~----~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~ 89 (395)
T PRK03715 18 PDIVFTHGKGS--WLYDHNGK----RYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ 89 (395)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh
Confidence 46788888886 59999999 99999999999999999 99999999999999876543 3568999999999998
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+||||+|||+| |.|+++. . ++|.+||+++++|||+|.+++++++...++.
T Consensus 90 ~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~~~-~------------~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 90 HSC---FDKVFFANSGAEANEGAIKLA-RKWGRKH-K------------NGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred ccC---CCEEEEeCCcHHHHHHHHHHH-HHHhhcc-C------------CCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 754 579999999999999999999 6776432 1 4678999999999999999999998654443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+.. .++.+ ++|+|. +.+++.++
T Consensus 153 ~-----~---~~~~--------~~~~~----------------~~~~d~------------------~~l~~~l~----- 177 (395)
T PRK03715 153 I-----F---APQV--------PGFPK----------------AELNDI------------------ASVEKLIT----- 177 (395)
T ss_pred C-----C---CCCC--------CCcee----------------eCCchH------------------HHHHHHcC-----
Confidence 2 1 0000 01111 113432 44555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ |++||+++||++|+++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 178 ---~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G 253 (395)
T PRK03715 178 ---DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG 253 (395)
T ss_pred ---CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC
Confidence 36899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|+++++++++. +.. ..|++||+|||++||+++++|++++++++ .++++.++++|++++.++.+++
T Consensus 254 -~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~l----~~~~~~~g~~l~~~L~~l~~~~ 321 (395)
T PRK03715 254 -VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPGF----LEGVRARGEYLKEKLLELSEER 321 (395)
T ss_pred -cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999863 321 14899999999999999999999988544 4555556666666776666777
Q ss_pred CCcceEEeeeeEEEEEEecC
Q 003472 775 RTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~ 794 (817)
+ +.+|||.|+|++|+|.++
T Consensus 322 ~-i~~vrG~Glm~~i~l~~~ 340 (395)
T PRK03715 322 G-LEGERGEGLLRALLLGKD 340 (395)
T ss_pred C-cCeEEcceeEEEEEecCc
Confidence 7 788999999999999753
No 63
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=2e-59 Score=536.73 Aligned_cols=348 Identities=18% Similarity=0.260 Sum_probs=276.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +|||+++|+|+.+|||+ ||+|.+|+++|++++.+. ...++...+||++|++
T Consensus 81 ~p~~~~~a~G~--~l~D~dG~----~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~ 150 (474)
T PLN02482 81 QPIVFDRVKGS--YAWDVDGN----EYIDYVGSWGPAIIGHA-DDEVLAALAETMKKGTSF---GAPCLLENVLAEMVID 150 (474)
T ss_pred CCeeEEEeeeC--EEEECCCC----EEEEecccccccccCCC-CHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999987643 3468999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccc--cCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY 532 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galsl--t~~~~~ 532 (817)
.+|. +++|+|+|||+||||.|||+| |+||+| .+||.|+++|||++...+.. ++...+
T Consensus 151 ~~p~--~~~v~f~~SGsEA~e~AlklA-R~~tgr------------------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~ 209 (474)
T PLN02482 151 AVPS--VEMVRFVNSGTEACMGVLRLA-RAYTGR------------------EKIIKFEGCYHGHADSFLVKAGSGVATL 209 (474)
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHhcCC------------------CEEEEECCccCCCcchhhhhcCCCcccc
Confidence 8874 689999999999999999999 888764 58999999999987554333 322111
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
.. ++.. + . | ....++.+ -++|||. +.+++.|++
T Consensus 210 ~~----~~~~--g--~--~---------~~~~~~~~--------~~~~nd~------------------~~l~~~l~~-- 242 (474)
T PLN02482 210 GL----PDSP--G--V--P---------KAATSATL--------TAPYNDL------------------EAVKKLFEA-- 242 (474)
T ss_pred CC----CCCC--C--C--C---------CCCCCCeE--------EecCCCh------------------HHHHHHHHh--
Confidence 10 0100 0 0 0 00001111 0236654 456777763
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
+++++||||+||| |+++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+||
T Consensus 243 ---~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lg 317 (474)
T PLN02482 243 ---NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317 (474)
T ss_pred ---CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhh
Confidence 4678999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| +|+||+++++++++.+... ..+.|++||+|||++|||++++|+++++++++++ .+.++++|++++.++..
T Consensus 318 gG-~Pigav~g~~ei~~~~~~~---~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~----~~~~g~~l~~~L~~l~~ 389 (474)
T PLN02482 318 GG-LPVGAYGGRREIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY----LDKITKKLIQGILEAGK 389 (474)
T ss_pred CC-CceEEEEEcHHHHHhhccC---CCcccccCcchhHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHHHHHHHH
Confidence 99 7999999999999998532 2357999999999999999999999988555444 55566666667777766
Q ss_pred cC--CCc-ceEEeeeeEEEEEEecCCC-------CCCcchHHHHHHHHHHcCCC
Q 003472 773 SH--RTV-QRVVALGTLCAIELQAAGC-------NAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~~--p~V-~~VrG~Glm~gIel~~~~~-------~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++ |.+ .++|| |++++|.++.. ..+.+....+...|+++||+
T Consensus 390 ~~g~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 440 (474)
T PLN02482 390 KAGHEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVY 440 (474)
T ss_pred hcCCCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeE
Confidence 64 543 56666 88999986421 01223567889999999986
No 64
>PLN00144 acetylornithine transaminase
Probab=100.00 E-value=4.2e-59 Score=523.46 Aligned_cols=343 Identities=22% Similarity=0.308 Sum_probs=282.9
Q ss_pred EeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC
Q 003472 380 DSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (817)
Q Consensus 380 ~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~ 459 (817)
++++|. |+||.||+ +||||++|+|+.++||+ ||+|++|+++|++++.+... .+.+++..+|+++|++..+
T Consensus 2 ~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~-- 71 (382)
T PLN00144 2 VSGKGC--KLYDVEGK----EYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF-- 71 (382)
T ss_pred eeeecc--EEEeCCCC----EEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC--
Confidence 456665 69999999 99999999999999999 99999999999999877653 3458999999999999875
Q ss_pred CcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCC
Q 003472 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (817)
Q Consensus 460 ~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~ 539 (817)
.++|+|++|||||||+|||+| |.|++++|...+. .....|.+||+|+++|||+|.+++++++...++.+
T Consensus 72 -~~~v~f~~sGseA~e~AlklA-r~~~~~~~~~~~~-----~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~---- 140 (382)
T PLN00144 72 -ADRVFFCNSGTEANEAAIKFA-RKYQRVRAPDKKD-----PAASSATEFVSFSNSFHGRTLGALALTSKEQYRTP---- 140 (382)
T ss_pred -CCeEEEeCCcHHHHHHHHHHH-HHHHhccCCCCcc-----ccccccceEEEECCCcccccHHHHhcCCCcccccc----
Confidence 579999999999999999999 8888765431000 00012689999999999999999999986655442
Q ss_pred CccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 003472 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (817)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~ 619 (817)
+ .+. .+++.++ +|||+ +.+++.++ .++
T Consensus 141 ~----~~~--------~~~~~~~----------------~~~d~------------------~~l~~~~~-------~~~ 167 (382)
T PLN00144 141 F----EPL--------MPGVTFV----------------EYGNL------------------EAARKLIQ-------KGK 167 (382)
T ss_pred C----CCC--------CCCeEEe----------------CCCCH------------------HHHHHhcC-------CCC
Confidence 1 110 0122222 24543 45665553 358
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcce
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLA 699 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~Pls 699 (817)
++|||+||+ |+.||+.+++++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|
T Consensus 168 ~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig 245 (382)
T PLN00144 168 TAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIG 245 (382)
T ss_pred eEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceE
Confidence 999999998 99999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred EEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcce
Q 003472 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQR 779 (817)
Q Consensus 700 Avl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~ 779 (817)
++++++++++.+... .|++||++||++|++++++|++++++ ++.++.+.+++++++.+.++++++|.+.+
T Consensus 246 ~v~~~~~~~~~~~~~------~~~~T~~~~pl~~aaa~a~l~~i~~~----~~~~~~~~~g~~l~~~l~~~~~~~~~~~~ 315 (382)
T PLN00144 246 AVLVTEKVASAINPG------DHGSTFAGGPLVCNAALAVLDKISKP----GFLASVAKKGEYLRELLRRKLGGNPHVKE 315 (382)
T ss_pred EEEEcHHHHhccCCC------CCCCCCCCCHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 999999999988532 48899999999999999999999884 45555566666667777778888999999
Q ss_pred EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 780 VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 780 VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|||.|+|++++|.. ....+...++++||+
T Consensus 316 vrg~G~~~~l~l~~--------~~~~~~~~~~~~Gv~ 344 (382)
T PLN00144 316 VRGVGLLVGIQLDV--------PAGPLVDACRDSGLL 344 (382)
T ss_pred eecCceEEEEEecC--------ccHHHHHHHHHCCeE
Confidence 99999999999932 235688899999985
No 65
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=9.1e-59 Score=523.55 Aligned_cols=344 Identities=24% Similarity=0.318 Sum_probs=285.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||+||+|+++|||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 17 ~~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~L~~ 88 (397)
T TIGR03246 17 APFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIGN-GYTNEPVLRLAKKLVD 88 (397)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhcccccC-ccCCHHHHHHHHHHHh
Confidence 46788898886 59999999 99999999999999999 99999999999998654432 3568899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .++++|++|||||||+|||+| |.|+.+++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 89 ~~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 89 ATF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG------------ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 886 479999999999999999999 788754422 4678999999999999999999998655443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.++ + +++.++ +|||. +.+++.+.
T Consensus 153 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (397)
T TIGR03246 153 G--------FAPL--P------GGIKHA----------------PYNDL------------------AAAKALIS----- 177 (397)
T ss_pred C--------CCCC--C------CceEEe----------------CCCCH------------------HHHHHHhc-----
Confidence 2 0111 0 122222 25553 45666653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ +++||+++||++||++|+++|++||++||+|||||||||+|++|+++++|++||++|+||+||||
T Consensus 178 ---~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG 253 (397)
T TIGR03246 178 ---DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG 253 (397)
T ss_pred ---cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .|++||++||++|++|+++|++++++++.++ .+.++++|.++|.++..++
T Consensus 254 -~pigav~~~~~i~~~~~~~------~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~----~~~~~~~l~~~L~~l~~~~ 322 (397)
T TIGR03246 254 -FPIGAMLTTTEIAAHLKVG------THGTTYGGNPLACAVAGKVLDLVNTPELLAG----VKQRHDLFVDGLEKINARY 322 (397)
T ss_pred -cceeEEEEcHHHHHhccCC------CcCCCCCCCHHHHHHHHHHHHHHhhccHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999988532 4889999999999999999999987544444 4555555555666666678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++.++. .+....+...++++|++
T Consensus 323 ~~~~~vrg~G~~~~i~~~~~~----~~~~~~~~~~l~~~Gv~ 360 (397)
T TIGR03246 323 NVFSEIRGKGLLIGAVLTEAY----QGKAKQFVNAAAEEGVI 360 (397)
T ss_pred CCeEeeecCceEEEEEEcCch----hhHHHHHHHHHHHCCeE
Confidence 989999999999999997641 13567788899999985
No 66
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=100.00 E-value=1.4e-58 Score=526.79 Aligned_cols=367 Identities=16% Similarity=0.189 Sum_probs=278.0
Q ss_pred EEeecCceeEEEeC-ccCccccceeeccccccccCCCCCCCHHHH--HHHHHHHHhcccc--CCCCCCChHHHHHHHHHH
Q 003472 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLL 453 (817)
Q Consensus 379 i~~~~G~~~~l~D~-dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~--~Ai~~q~~~~~~~--~~~~~~~~~~~eLae~L~ 453 (817)
+++++|. |+||. ||| +||||++|+|+.++||+ ||+|+ +|+++|++++.+. ......+++..+++++|+
T Consensus 23 ~~~a~G~--~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (431)
T TIGR03251 23 LDRSRGS--VLVDARDGR----RYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFA 95 (431)
T ss_pred EEeccCC--EEEECCCCC----ChhhcccChhhcCCCCC-ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHH
Confidence 5777775 59996 999 99999999999999999 99999 9999999987532 223467889999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccccceEEEEEcCCccCCccccccccCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~----~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~ 529 (817)
+.++.+.+++|+|+||||||||+|||+| |+||++ +|. + .++|++||+|+++|||+|.+++++++.
T Consensus 96 ~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~-----~-----~~~~~~ii~~~~~yHG~t~~als~~~~ 164 (431)
T TIGR03251 96 RVLGDPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGI-----P-----AALGTQVLHLRQAFHGRSGYTLSLTNT 164 (431)
T ss_pred HhcCCCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCC-----C-----CCCCceEEEECCccCCcchhhhhccCC
Confidence 9863223789999999999999999999 788754 232 0 012678999999999999999999986
Q ss_pred CCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHh
Q 003472 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (817)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~ 609 (817)
..++.. +.+.+.. .+++.|+.. + +|+..+ . .+...+...+++.+++.++
T Consensus 165 ~~~~~~--------~~~~~~~---------~~~~~p~~~-~--------~~~~~~--~---~~~~~~~~~~l~~~~~~~~ 213 (431)
T TIGR03251 165 DPRKTA--------RFPKFDW---------PRIDNPKLT-F--------PLDAPN--L---DQVIALEEEALRQARAAFA 213 (431)
T ss_pred cccccc--------CCCCCCC---------ccCCCCccc-C--------Cccccc--c---chhhHHHHHHHHHHHHHHH
Confidence 433332 0111000 112222110 0 010000 0 0011222334567777776
Q ss_pred cCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccc
Q 003472 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689 (817)
Q Consensus 610 ~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK 689 (817)
. .+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||
T Consensus 214 ~-----~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK 287 (431)
T TIGR03251 214 E-----RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287 (431)
T ss_pred h-----CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecc
Confidence 3 4679999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 690 LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 690 ~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
++ |+++++.++++.+.....-. ....|++||+|||++|++|+++|++++++++.+ +++.++++|.++|.+
T Consensus 288 ~~-----~~~g~~~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~----~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 288 KT-----QVCGIMAGRRVDEVADNVFA-VPSRLNSTWGGNLVDMVRATRILEIIEEERLVD----NARVQGAHLLARLHE 357 (431)
T ss_pred cC-----ccceEEecchHHHhhhhccc-CccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHH
Confidence 95 66777887765443210000 112488999999999999999999998854444 455566666667777
Q ss_pred HHHcCC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 770 QISSHR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 770 ~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+++| .+.+|||.|+|++|+|.+. +....+...++++||+
T Consensus 358 l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~l~~~Gvl 399 (431)
T TIGR03251 358 LAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQLYREGVL 399 (431)
T ss_pred HHHhCccceecccccceeEEEEeCCH------HHHHHHHHHHHhCCeE
Confidence 777888 8999999999999999643 3566788999999985
No 67
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=6.9e-57 Score=509.71 Aligned_cols=344 Identities=24% Similarity=0.291 Sum_probs=284.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 21 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 92 (406)
T PRK12381 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN-GYTNEPVLRLAKKLID 92 (406)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC-ccCCHHHHHHHHHHHh
Confidence 36788888886 59999999 99999999999999999 99999999999998765432 4568889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .++|+|++||+||||+|||+| |+++..++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 93 ~~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 93 ATF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred hCC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 876 479999999999999999999 778754332 4578999999999999999999998655443
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +++. + +++.+ ++|||. +.+++.+.
T Consensus 157 ~--------~~~~--~------~~~~~----------------~~~~d~------------------~~l~~~l~----- 181 (406)
T PRK12381 157 D--------FAPL--P------PDIRH----------------AAYNDL------------------NSASALID----- 181 (406)
T ss_pred C--------CCCC--C------CCeeE----------------eCCCCH------------------HHHHHhcc-----
Confidence 2 1111 0 11111 124553 44565553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ +++||+++||++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 182 ---~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG 257 (406)
T PRK12381 182 ---DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG 257 (406)
T ss_pred ---CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|++++++++ .++.+.++++|.++|.++..++
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~----~~~~~~~~~~l~~~L~~l~~~~ 326 (406)
T PRK12381 258 -FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEM----LNGVKQRHDWFVERLNTINARY 326 (406)
T ss_pred -CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999998853 25889999999999999999999987544 4445555566666666665678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++.++. .+....+...++++||+
T Consensus 327 ~~~~~vrg~Gl~~~~~l~~~~----~~~~~~~~~~l~~~Gv~ 364 (406)
T PRK12381 327 GLFSEIRGLGLLIGCVLNAEY----AGKAKQISQEAAKAGVM 364 (406)
T ss_pred CCEEEEecCeEEEEEEecCch----hhHHHHHHHHHHHCCcE
Confidence 888999999999999997641 13557788899999985
No 68
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=100.00 E-value=3.1e-58 Score=472.08 Aligned_cols=366 Identities=19% Similarity=0.270 Sum_probs=302.5
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
+.|+.|.+++|.| +||.+|+ +||||++. +...||+ ||+|++|...|+...... ..+.|+...++|+.|.
T Consensus 28 sDP~kivRaq~QY--mfDE~g~----~yLDCInN--VaHvghc-hp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVRAQGQY--MFDEEGT----RYLDCINN--VAHVGHC-HPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhhehhccce--eeccCcc----cHHHHhhh--hhhcccC-CHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 5688899999986 9999999 99999984 3457999 999999999999986543 3567899999999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
..+|. ++.++|+|||||||+.|||+| |.||++ .++|.++.+|||.....|.+|- ..|.
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkh------------------qDvItldHAYHGHl~s~mE~SP-YKF~ 154 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNFTKH------------------QDVITLDHAYHGHLQSVMEVSP-YKFN 154 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhhccc------------------CceEEEechhccceeeeeeccc-eecc
Confidence 98885 889999999999999999999 888876 3899999999999888888872 1222
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.+ .-...| +-++..|-|+.|+.... +-.+++. +....|.+.++++++...
T Consensus 155 ~g----------~~v~kp-----d~VHVAPcPDvyrGK~r---~~~~~~a-----------~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 155 QG----------GGVAKP-----DYVHVAPCPDVYRGKFR---DKMYPDA-----------DMGALYADPVKEICQDQL- 204 (452)
T ss_pred CC----------CCcCCC-----ceeEecCCccccccccc---cccCCcc-----------cchhhhhhHHHHHHHHHH-
Confidence 11 111112 23566678888876432 1112221 223456677777776521
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCceeecccccC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDivtlgK~Lg 692 (817)
..+..|||+|.|.+ |+.||.+.||++|++.+.+..+.+|.++|+||||+||||.|+ +|+++.|++.|||+|+||.+|
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 24567999999997 999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
|| .|+++|+.+++|.++|.... ..+-+||+|||++||+++|+++++++ ++|.+++.++|++|...|.++..
T Consensus 283 NG-hPVa~VattkeIA~Af~atg----v~YFNTyGGnPVsCAv~laVm~v~e~----E~Lq~ha~~vG~~L~~lL~~~k~ 353 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATG----VEYFNTYGGNPVSCAVGLAVMRVCED----ENLQEHAQQVGEKLEVLLRRLKQ 353 (452)
T ss_pred CC-CeeeEEeccHHHHHHhcccc----ceehhccCCCchhHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHhh
Confidence 99 89999999999999996532 34668999999999999999999999 77888888899988887777778
Q ss_pred cCCCcceEEeeeeEEEEEEecCCCCCCc--chHHHHHHHHHHc
Q 003472 773 SHRTVQRVVALGTLCAIELQAAGCNAGY--CLIELFLYNFLTT 813 (817)
Q Consensus 773 ~~p~V~~VrG~Glm~gIel~~~~~~~~~--~~~~~~~~~~l~~ 813 (817)
+|++|+||||.||++||+|+++...+.+ +.+.+.++++.+.
T Consensus 354 kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~ 396 (452)
T KOG1403|consen 354 KHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKEL 396 (452)
T ss_pred hccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999777765 5667777777664
No 69
>PLN02624 ornithine-delta-aminotransferase
Probab=100.00 E-value=7e-56 Score=509.82 Aligned_cols=351 Identities=20% Similarity=0.273 Sum_probs=289.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||+ +||||+||+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 57 ~p~~~~~a~G~--~l~d~dG~----~ylD~~sg~~~~~~Gh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~ 128 (474)
T PLN02624 57 IPVVFSRAKGS--RIWDPEGK----KYLDFLSAYSAVNQGHC-HPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTS 128 (474)
T ss_pred CCceEEeeeeC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHh
Confidence 36788898886 49999999 99999999999999999 99999999999999887653 4678999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~-~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++| .++++|+|||+||||+|||+| |.|+. ++|. ..+|.+||++.++|||+|.+++++++...++
T Consensus 129 ~~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~-----------~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~ 193 (474)
T PLN02624 129 MFG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGI-----------PKNEAIIVSCCGCFHGRTLAAISMSCDNEAT 193 (474)
T ss_pred hcC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCC-----------CCCCcEEEEECCCcCCCCHHHhhcCCCcccc
Confidence 986 579999999999999999999 67642 1221 0246789999999999999999999765443
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.. +++.++ +|+|. +.+++.|+.
T Consensus 194 ~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~--- 220 (474)
T PLN02624 194 RG--------FGPLL--------PGHLKV----------------DFGDL------------------DALEKIFEE--- 220 (474)
T ss_pred cc--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHHHHh---
Confidence 32 11111 111122 24543 456677763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++|||+||+ |+++|+++|+++||++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++||
T Consensus 221 --~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lgg 297 (474)
T PLN02624 221 --DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGG 297 (474)
T ss_pred --CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccC
Confidence 3578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+.. ..|++||++||++|+++.++|++++++ ++.++...++++|++++.++.++
T Consensus 298 G~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~----~l~~~~~~~~~~l~~~L~~l~~~ 367 (474)
T PLN02624 298 GVIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDE----KLAERSAKLGQELRDQLQKIQKQ 367 (474)
T ss_pred CCCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887742 258899999999999999999999874 45556666777777777777678
Q ss_pred CC-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HR-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+| .+.+|||.|+|++|+|..+. .+......+.+.++++||+
T Consensus 368 ~~~~i~~vrg~G~~~~i~l~~~~--~~~~~a~~~~~~L~e~GV~ 409 (474)
T PLN02624 368 FPKLIKEVRGRGLLNAVVLNSPK--LGPVSAYDVCLKLKERGLL 409 (474)
T ss_pred CCCceEEEEeeEEEEEEEecCCC--cChHHHHHHHHHHHhCCeE
Confidence 88 48899999999999996541 1123456788889999985
No 70
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=100.00 E-value=2.4e-53 Score=483.81 Aligned_cols=344 Identities=19% Similarity=0.246 Sum_probs=263.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|+++.... ...++...+|+++|+
T Consensus 29 ~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~ 98 (431)
T PRK06209 29 LAPGFIQRGSGA--HVWDVDGN----EYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGCNF---TRPSAIELDAAESFL 98 (431)
T ss_pred CCCeEEEeccCC--EEEeCCCC----EEEEccccccchhcCCC-CHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHH
Confidence 457889998886 59999999 99999999999999999 999999999999987532 234566678999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEE-cCCccCCccccccccCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~-~gsyHG~t~galslt~~~~~ 532 (817)
+.+|. .++|+|+||||||||+|||+| |+||++ .+|+.+ .++|||...+....+. .
T Consensus 99 ~~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~i~~~~~~~~h~~~~~~~g~~~---~ 154 (431)
T PRK06209 99 ELIDG--ADMVKFCKNGSDATSAAVRLA-RAYTGR------------------DLVARCADHPFFSTDDWFIGTTP---M 154 (431)
T ss_pred HhCCc--cceEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEeccCccccccccccccCC---C
Confidence 98874 579999999999999999999 888764 488998 7888874221111000 0
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
.. + .+. .. ...+. .++|||+ +.+++.|++
T Consensus 155 ~~----------~----~~~-----~~--~~~~~----------~~~~~d~------------------~~l~~~l~~-- 183 (431)
T PRK06209 155 SA----------G----IPA-----SV--SALTV----------TFRYNDI------------------ASLEALFED-- 183 (431)
T ss_pred CC----------C----CCh-----hH--hcccc----------ccCCCCH------------------HHHHHHHHh--
Confidence 00 0 000 00 00000 0235553 557777763
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccC
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lg 692 (817)
.++++||||+||+ +|+ .||++||++|+++|++||++||+|||||||++++ +++.+++|++|||+|+||+||
T Consensus 184 ---~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lg 254 (431)
T PRK06209 184 ---HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALG 254 (431)
T ss_pred ---CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhc
Confidence 3568999999998 876 7789999999999999999999999999998753 445557899999999999999
Q ss_pred CCCCcceEEEechHHHhh--hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~--~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
|| +|+|++++++++++. +........+.|++||++||++||+++++|++|+++++.+++ ..++++|++.+.++
T Consensus 255 gG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~----~~~g~~l~~~L~~~ 329 (431)
T PRK06209 255 NG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERL----HEQGAKLAAGVNEA 329 (431)
T ss_pred CC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHHHHH
Confidence 99 799999999999997 321111245679999999999999999999999985555555 45555556666666
Q ss_pred HHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
..+++.+.+|||.|+++++++...... ........+.+.++++|++
T Consensus 330 ~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 377 (431)
T PRK06209 330 AAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVL 377 (431)
T ss_pred HHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCcc
Confidence 778999999999999999999754211 1123445788999999985
No 71
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=2.1e-53 Score=484.02 Aligned_cols=353 Identities=21% Similarity=0.283 Sum_probs=281.7
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+.+|+++... ....++...+|+++|++
T Consensus 32 ~~~~~~~a~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~ 101 (426)
T PRK00062 32 TPRFIERAKGA--YLYDVDGN----EYIDYVGSWGPMILGHA-HPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIE 101 (426)
T ss_pred CCeEEEeCcCC--EEEeCCCC----EEEEcccchhhhhcCCC-CHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHH
Confidence 46788888886 59999999 99999999999999999 99999999999998432 23568889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.++. .++|+|++||+||||+|+|+| |.+++ |.+||+|+++|||+|.++.++++......
T Consensus 102 ~~~~--~~~v~~~~sGseA~e~Aik~a-~~~~g------------------~~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 102 LVPS--IEMVRMVNSGTEATMSAIRLA-RGYTG------------------RDKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCC--CCEEEEecCHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCccCCchhhhhhccCcccccc
Confidence 8763 579999999999999999999 67754 35899999999999988888765322110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .++... . +. .+ .+..++ ++|+|. +.+++.+++
T Consensus 161 ~--~~~~~~----~--~~--------~~-~~~~~~--------~~~~d~------------------~~l~~~i~~---- 193 (426)
T PRK00062 161 G--LPDSPG----V--PE--------DF-AKHTLT--------APYNDL------------------EAVEELFEE---- 193 (426)
T ss_pred C--CCCCCC----C--Cc--------cc-ccceEE--------cCCCCH------------------HHHHHHHHh----
Confidence 0 011000 0 00 00 010110 124443 456666653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++++++||+||+ |+++|+++++++||++|+++|++||+++|+||||||| |+|.+|+++++++.||++++||++|+|
T Consensus 194 -~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G 270 (426)
T PRK00062 194 -YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG 270 (426)
T ss_pred -CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... ..+.|.+||++||++|++++++|+++++++ +.++.+.+++++++++.+..+++
T Consensus 271 -~p~ga~~~~~~i~~~~~~~---~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ 342 (426)
T PRK00062 271 -LPVGAFGGRREIMEQLAPL---GPVYQAGTLSGNPLAMAAGLATLKLLKEPG----FYEELEALTKRLAEGLKEAAKKA 342 (426)
T ss_pred -CcceeeeEHHHHHHhhccC---CCceecccCcCCHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999998532 134688999999999999999999998854 45555556666666777777888
Q ss_pred CCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|++++|.++... .+......+...++++||+
T Consensus 343 ~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~ 391 (426)
T PRK00062 343 GIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVY 391 (426)
T ss_pred CCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeE
Confidence 99999999999999999864211 1224457899999999975
No 72
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=100.00 E-value=6.6e-53 Score=479.58 Aligned_cols=353 Identities=19% Similarity=0.269 Sum_probs=280.6
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+. ...++...+|+++|++
T Consensus 30 ~p~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~ 99 (423)
T TIGR00713 30 TPFFVARGKGA--YLYDVDGN----EYIDYVLSWGPLILGHA-HPRVVEAVKEALERGTSY---GAPTEAEILLAKEIIS 99 (423)
T ss_pred CCeeEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHH
Confidence 47889998886 59999999 99999999999999999 999999999999986542 3467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+. .++|+|++||+||||+|+|+| |.|+++ .+||+++++|||.+.+++++++......
T Consensus 100 ~~~~--~~~v~~~~sGseA~e~Alk~a-r~~~gr------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 100 RVPS--VEMVRFVNSGTEATMSAVRLA-RGYTGR------------------DKIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred hCCc--ccEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCCCCChhhhhccccCccccc
Confidence 8874 379999999999999999999 778653 5899999999999888777665321110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
..++..+ + + ....|..++ ++|+|. +.+++.+++
T Consensus 159 --~~~~~~~----~--~---------~~~~~~~~~--------~~~~d~------------------~~l~~~i~~---- 191 (423)
T TIGR00713 159 --GLPTSPG----V--P---------EDFAKLTLV--------LPYNDL------------------EALEEVFEE---- 191 (423)
T ss_pred --CCCCCCC----C--C---------cccccceEE--------eCCCCH------------------HHHHHHHHH----
Confidence 0011100 0 0 000011110 124443 456667763
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.+++++|||+||+ ++++|+++++++|+++|+++|++||++||+|||+||| |+|.+|+++++++.||++||||++|+|
T Consensus 192 -~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G 268 (423)
T TIGR00713 192 -YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG 268 (423)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... ..+.|++||++||++|++|+++|++++++++ .++.+.+++++++.+.+.++++
T Consensus 269 -~pig~v~~~~~i~~~~~~~---~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 340 (423)
T TIGR00713 269 -LPVGAFGGRREIMERLAPE---GPVYQAGTLSGNPLAMAAGLATLKLLDEEGV----YTELDELAKRLAEGLSEVLEDT 340 (423)
T ss_pred -CceeeeeEHHHHHHhhCcC---CCeeeccCCCCCHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988532 2346889999999999999999999988544 4445555666666777778888
Q ss_pred CCcceEEeeeeEEEEEEecCCCC-------CCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCN-------AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~-------~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+++++..+... .+......+...++++||+
T Consensus 341 ~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 389 (423)
T TIGR00713 341 GIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVF 389 (423)
T ss_pred CCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeE
Confidence 99999999999999999754211 0112345788899999974
No 73
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=100.00 E-value=1.4e-52 Score=472.95 Aligned_cols=340 Identities=19% Similarity=0.306 Sum_probs=276.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. ...+++..+|+++|++
T Consensus 22 ~p~~~~~~~G~--~l~d~~G~----~~lD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (396)
T PRK04073 22 LPIVISEAEGV--WVKDPEGN----RYMDMLSAYSAVNQGHR-HPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAK 93 (396)
T ss_pred CCceEEeeeec--EEEECCCC----EEEEcCCCHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh
Confidence 46788888886 59999999 99999999999999999 99999999999999887643 3568899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~-~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+.+ .++++|++||+||||+|||+| |.|+.. .|. .++|.+||+++++|||+|.+++++++.+.++
T Consensus 94 ~~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~-----------~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 94 LTG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGV-----------EPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCC-----------CCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 876 479999999999999999999 666421 121 1357799999999999999999999765443
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.+ +++.++ +|+|. +.+++.+.
T Consensus 159 ~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~i~---- 184 (396)
T PRK04073 159 RG--------FGPML--------PGIKKI----------------PYGDL------------------EALKAAIT---- 184 (396)
T ss_pred cC--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhcc----
Confidence 31 11110 111222 24442 34555553
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
+++++||+||+ ++.+|.++++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++|+
T Consensus 185 ----~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~ 259 (396)
T PRK04073 185 ----PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG 259 (396)
T ss_pred ----cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccC
Confidence 35899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+... .+++||++||++|++|+++|++++++++. ++.+.++++|.+.+.++ .
T Consensus 260 gg~~ig~~~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aaL~~~~~~~l~----~~~~~~~~~l~~~L~~l--~ 327 (396)
T PRK04073 260 GVFPISCVAANRDILGVFTPG------SHGSTFGGNPLACAVSIAALEVLEEEKLP----ERSLELGEYFKEQLKEI--D 327 (396)
T ss_pred CCCcceEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHhh--c
Confidence 889999999999999988532 47899999999999999999999874444 44555566666555543 4
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|+++++... ...+...++++||+
T Consensus 328 ~~~i~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gv~ 362 (396)
T PRK04073 328 NPMIKEVRGRGLFIGVELNEP--------ARPYCEALKEEGLL 362 (396)
T ss_pred CCcccceecceEEEEEEecch--------HHHHHHHHHHCCeE
Confidence 567889999999999998632 35678888999985
No 74
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=100.00 E-value=1.5e-51 Score=468.75 Aligned_cols=361 Identities=25% Similarity=0.351 Sum_probs=291.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||+||+ +||||++|+|+.++||+ ||+|.+|+++|++++.+..+....++...+|+++|++
T Consensus 23 ~p~~~~~~~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 95 (425)
T PRK08088 23 HPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQ 95 (425)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHH
Confidence 36788888886 59999999 99999999999999999 9999999999999987655444558889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC-CCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~-~~~ 533 (817)
..|.++.++++|++||+||||+|||+| |.++++ .+||+|+++|||+|.+++++++.. .++
T Consensus 96 ~~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r------------------~~iv~~~~~yHG~~~~~~~~~~~~~~~~ 156 (425)
T PRK08088 96 KVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGVIAFTGAYHGRTHYTLALTGKVNPYS 156 (425)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC------------------CeEEEECCccCCccHHHHHhhCCCCccc
Confidence 877553469999999999999999999 777653 489999999999999999998642 122
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
. +++++ ..++.++++|..+ ++. + .+.+.+.+++.++..
T Consensus 157 ~--------~~~~~--------~~~~~~~~~p~~~------------~~~-----------~-~~~~~~~l~~~l~~~-- 194 (425)
T PRK08088 157 A--------GMGLM--------PGHVYRALYPCPL------------HGV-----------S-EDDAIASIERIFKND-- 194 (425)
T ss_pred c--------CCCCC--------CCCcEEcCCCccc------------cCc-----------c-HHHHHHHHHHHHHhc--
Confidence 2 11111 1223344444322 111 0 112346677777531
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
..++++||||+||+ |+++|+++++++|+++|+++|++||+++|+|||+||+||+|++++++++++.|||.+|||++++
T Consensus 195 -~~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~ 272 (425)
T PRK08088 195 -AAPEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG 272 (425)
T ss_pred -cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC
Confidence 23578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +|+|++++++++++.+... .+++||++||++|+++.++|+.++.++ +.++.+..++++++.+.++.++
T Consensus 273 G-~rig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~a~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~ 341 (425)
T PRK08088 273 G-FPLAGVTGRAEVMDAIAPG------GLGGTYAGNPIACAAALAVLKVFEQEN----LLQKANALGEKLKDGLLAIAEK 341 (425)
T ss_pred C-CcceeeEecHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHh
Confidence 9 7999999999999988542 478999999999999999999998744 4455555566666677777778
Q ss_pred CCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l~~Gv~ 816 (817)
+|.+.+|||.|+|++++|.++... ........+...|+++||+
T Consensus 342 ~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~ 386 (425)
T PRK08088 342 HPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLI 386 (425)
T ss_pred CCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCE
Confidence 899999999999999999754311 1224578899999999974
No 75
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=7.5e-52 Score=465.73 Aligned_cols=340 Identities=21% Similarity=0.291 Sum_probs=280.0
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||+||+|++++||+ ||+|++|+++|++++.+... .+.++...+|+++|++
T Consensus 13 ~~~~~~~~~G~~--~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 84 (389)
T PRK01278 13 ADLAFERGEGVW--LIDEDGE----RYLDFASGIAVNSLGHA-HPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE 84 (389)
T ss_pred CCceEEeeecCE--EEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh
Confidence 467889988864 8999999 99999999999999999 99999999999998765442 3568999999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+|||++|+|+| |.|+..+|. ++|.+||+++++|||++.+++++++.+.++.
T Consensus 85 ~~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~------------~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 85 NSF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH------------PERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hCC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 875 479999999999999999999 777654443 4678999999999999999999987654433
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ..+. .+++..+ +|+|. +.+++.+.
T Consensus 149 ~--------~~~~--------~~~~~~~----------------~~~d~------------------~~l~~~l~----- 173 (389)
T PRK01278 149 G--------FGPL--------VPGFDQV----------------PFGDI------------------EALKAAIT----- 173 (389)
T ss_pred c--------CCCC--------CCCceEe----------------CCCCH------------------HHHHHhhC-----
Confidence 2 0000 0111111 24443 45665553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ ++.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 174 ---~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 249 (389)
T PRK01278 174 ---PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG 249 (389)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC
Confidence 27999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|++++++++.++ .+.+++++++++.++.+++
T Consensus 250 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~ 318 (389)
T PRK01278 250 -FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDN----VQRMGLYLKQKLEGLVDRF 318 (389)
T ss_pred -cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHhhC
Confidence 799999999999988843 25889999999999999999999987444444 4455555555666666678
Q ss_pred C-CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 R-TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p-~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
| ++.+|||.|+|+++++..+ ...|...++++||+
T Consensus 319 ~~~~~~v~g~G~~~~i~~~~~--------~~~~~~~l~~~GV~ 353 (389)
T PRK01278 319 PDVIEEVRGKGLLLGLKCVVP--------NRDLVQALRDEGLL 353 (389)
T ss_pred CCceeeEecccEEEEEEEecC--------HHHHHHHHHHCCeE
Confidence 7 7889999999999999542 35788899999984
No 76
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=100.00 E-value=1e-50 Score=458.52 Aligned_cols=348 Identities=21% Similarity=0.316 Sum_probs=281.8
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++++++|.+ +||.||+ +||||+|++++.++||+ ||+|++|+++|++++.+.+. ...++...+|+++|++
T Consensus 19 ~~~~~~~~~g~~--~~~~~g~----~~lD~~s~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 90 (401)
T TIGR01885 19 LPVVFSKAEGVH--VWDVEGK----RYLDFLSAYSAVNQGHC-HPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTK 90 (401)
T ss_pred CCceEEeeecCE--EEeCCCC----EEEEcccCHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 356788888875 8999999 99999999999999999 99999999999999876543 2468899999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccc-cccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~-G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+++ .++++|++||+||||+|||+| |.++.++ |. ..+|.+|++++++|||+|.+++++++.+.++
T Consensus 91 ~~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~-----------~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~ 155 (401)
T TIGR01885 91 LFG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGI-----------PENQAIIVSAKGNFHGRTLGAISMSTDPDSR 155 (401)
T ss_pred hcC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCC-----------CCCCCEEEEECCCcCcccHHHHhCcCCcccc
Confidence 987 479999999999999999999 6775432 21 1357899999999999999999998754332
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +++.. | ++.. ++|||. +.+++.|++
T Consensus 156 ~~--------~~~~~--~------~~~~----------------~~~~d~------------------~~le~~l~~--- 182 (401)
T TIGR01885 156 TN--------FGPYV--P------GFKK----------------IPYNNL------------------EALEEALED--- 182 (401)
T ss_pred cc--------cCCCC--C------CceE----------------eCCCCH------------------HHHHHHHHh---
Confidence 21 11110 0 1111 124543 556777763
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.++++++||+||+ ++++|.+.|+++|+++|+++|++||+++|+|||||||||+|++++++++++.||++|+||+++|
T Consensus 183 --~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~ 259 (401)
T TIGR01885 183 --HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSG 259 (401)
T ss_pred --cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccC
Confidence 2468999999998 9999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|++|+|++++++++++.+... .+++||++||++|++++++|+++++++ +.++.+.+++++++.+.++ .
T Consensus 260 g~~~ig~v~~~~~i~~~~~~~------~~~~t~~~~p~~~~aa~a~L~~i~~~~----l~~~~~~~~~~~~~~L~~l--~ 327 (401)
T TIGR01885 260 GVYPVSAVLADDDVMLTIKPG------EHGSTYGGNPLACAVAVAALEVLEEEK----LAENAEKLGEIFRDQLKKL--P 327 (401)
T ss_pred CCCCcEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHhc--c
Confidence 988999999999999887532 367899999999999999999998744 4455555666666655543 3
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|++|++..+. . ......+...++++||+
T Consensus 328 ~~~~~~~~g~g~~~~i~~~~~~-~--~~~~~~l~~~l~~~Gv~ 367 (401)
T TIGR01885 328 KPIITEVRGRGLLNAIVIDESK-T--GRTAWDLCLKLKEKGLL 367 (401)
T ss_pred CCceeEEeecCeeEEEEeccCc-c--hhHHHHHHHHHHhCCEE
Confidence 5778899999999999996542 1 12457788889999985
No 77
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=100.00 E-value=1.6e-50 Score=457.35 Aligned_cols=344 Identities=24% Similarity=0.326 Sum_probs=279.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++.+++|. ++||.||+ +||||+||+|+.+|||+ ||+|.+|+.+|++++.+... ...+++..+|+++|++
T Consensus 22 ~~~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (403)
T PRK05093 22 AEFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLID 93 (403)
T ss_pred CCeeEEEeecC--EEEeCCCC----EEEEcCcCHHhccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHh
Confidence 36788888886 59999999 99999999999999999 99999999999998665432 2467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+||||+|+|+| |.++.+++. .+|.+||+++++|||+|.+++++++.+.++.
T Consensus 94 ~~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~------------~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 157 (403)
T PRK05093 94 ATF---AERVFFANSGAEANEAAFKLA-RRYACDRHG------------PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSD 157 (403)
T ss_pred hCC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEEcCCcCCchhhhHhhcCChhhhh
Confidence 875 479999999999999999999 777754321 4578999999999999999999987643332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. .++. + .++.+ ++|||. +.+++.+.
T Consensus 158 ~--------~~~~---~-----~~~~~----------------~~~~d~------------------~~l~~~l~----- 182 (403)
T PRK05093 158 G--------FGPK---P-----ADITH----------------VPFNDL------------------AAVKAVID----- 182 (403)
T ss_pred c--------CCCC---C-----CCcEE----------------eCCCCH------------------HHHHHHhc-----
Confidence 1 0100 0 11112 225553 44565553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ +++||+.+++++|+++|+++|++||+++|+|||++||||+|++++++++++.||+++|||++++|
T Consensus 183 ---~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G 258 (403)
T PRK05093 183 ---DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG 258 (403)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+++||+++|++|++++++|++++++++.+++.++. +++.+.|.++..++
T Consensus 259 -~rig~vv~~~~i~~~l~~~------~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~----~~l~~~L~~~~~~~ 327 (403)
T PRK05093 259 -FPIGAMLTTAEIASHFKVG------THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARR----QRFVDGLQKINQKY 327 (403)
T ss_pred -cceEEEEEcHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH----HHHHHHHHHHHhhC
Confidence 8999999999999988532 477899999999999999999997755555555444 44455555554567
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.++||.|+++++++..+. ......|...++++||+
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~~Gv~ 365 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAEEGVM 365 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHHCCeE
Confidence 778899999999999997531 12456788999999975
No 78
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=7.1e-49 Score=439.50 Aligned_cols=334 Identities=22% Similarity=0.287 Sum_probs=273.2
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||+|++|+.+|||+ ||+|++|+++|++++.+.. ....++...+|+++|.+
T Consensus 11 ~~~~~~~~~G~~--~~d~~G~----~~lD~~s~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 82 (377)
T PRK02936 11 FPIDIVKGKGTK--VTDNNGK----TYLDFTSGIAVCNLGHC-HPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAE 82 (377)
T ss_pred CCceEEEeecCE--EEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHh
Confidence 467888988875 8999999 99999999999999999 9999999999999875543 23457889999999998
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+ .++++|++||+|||++|+|+| |.+++ +.+||+++++|||++.+++++++...++.
T Consensus 83 ~~~---~~~~~~~~sG~~a~~~A~~~a-~~~~g------------------~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~ 140 (377)
T PRK02936 83 NSA---GDLVFFCNSGAEANEAALKLA-RKHTG------------------KSKIVTFEQSFHGRTFGTMSATGQEKIKE 140 (377)
T ss_pred cCC---CCEEEEeCCcHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCCCcHHhhhccCCccccc
Confidence 766 368999999999999999999 66654 35899999999999999999987544332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++.. +++..+ +|||. +.+++.+.
T Consensus 141 ~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~~~----- 165 (377)
T PRK02936 141 G--------FGPLL--------PGFTHV----------------PFNDI------------------KALKEVMN----- 165 (377)
T ss_pred c--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhcc-----
Confidence 2 11100 111111 24443 44555553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ |+++|+++++++|+++|+++|++||+++|+|||+|||||+|++++++++++.||++|+||++++|
T Consensus 166 ---~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 241 (377)
T PRK02936 166 ---EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG 241 (377)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC
Confidence 35899999998 99999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+.+||++||++|++++++|+.++++++.+++.++ ++++.+.+.+.+.++
T Consensus 242 -~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~----~~~l~~~L~~~~~~~ 310 (377)
T PRK02936 242 -IPVGAMIGKKELGTAFGPG------SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEK----GEYFLQKLQEELEHL 310 (377)
T ss_pred -CccEEEEEcHHHHhhccCC------CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHhhC
Confidence 7999999999999988532 47789999999999999999999765555555544 444555666666678
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+|||.|+|+.+++.++ ...+...+.++||+
T Consensus 311 ~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l~~~gv~ 344 (377)
T PRK02936 311 ECVKNIRGKGLMIGIECTEE--------VAPVIEQLREEGLL 344 (377)
T ss_pred CcEEeEeecceEEEEEecch--------HHHHHHHHHHCCeE
Confidence 88999999999999999643 46688888899974
No 79
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=9.3e-49 Score=441.81 Aligned_cols=335 Identities=21% Similarity=0.279 Sum_probs=272.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|. ++||.||+ +||||.+|+++++|||+ ||+|.+|+++|++++++.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~~~d~dg~----~~lD~~s~~~~~~lG~~-~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVRGEGA--VVWDVDGK----EYLDLLGGIAVNALGHA-HPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEEeeec--EEEECCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 46788898886 49999999 99999999999999999 9999999999999977643 23567888999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
..+....++++|++||+|||+.|+|++ +. ++ |.+||.++++|||++.+++++++...++.
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~-~~-~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLA-RL-TG------------------RTKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHH-HH-HC------------------CCeEEEECCCcCCccHHHHhccCCccccc
Confidence 877432469999999999999999999 44 22 45899999999999999999987543332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. +.+ + ..++..+ +|+|. +.+++.+.
T Consensus 157 ~-----~~~----~-------~~~~~~~----------------~~~d~------------------~~l~~~~~----- 181 (398)
T PRK03244 157 P-----FEP----L-------PGGVEHV----------------PYGDV------------------DALAAAVD----- 181 (398)
T ss_pred C-----CCC----C-------CCCceEe----------------CCCCH------------------HHHHHhhc-----
Confidence 1 000 0 0011111 13332 34555542
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++||+||+ |+.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||+|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 37899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+.. ..|++||++||++|++++++|+++++++ +.++.+.++++|++.+.++ .+
T Consensus 258 -~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~~--~~ 324 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEG----LLENAERLGEQLRAGIEAL--GH 324 (398)
T ss_pred -cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHhc--CC
Confidence 799999999999998843 2588999999999999999999998744 4445555566555555433 47
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.+|||.|+|++|++..+ ....+..+++++||+
T Consensus 325 ~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~~~Gv~ 359 (398)
T PRK03244 325 PLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAREAGFL 359 (398)
T ss_pred CceeeEeeccEEEEEEEecc-------HHHHHHHHHHHCCeE
Confidence 88889999999999999532 456788899999974
No 80
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=100.00 E-value=4.9e-48 Score=436.35 Aligned_cols=342 Identities=19% Similarity=0.287 Sum_probs=274.7
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. |+||.||+ +||||++|+++.++||+ ||+|.+|+++|++++.+.+. ...++...+|+++|+++
T Consensus 24 ~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~~Gh~-~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTRGEGV--WVWDTDGN----RYLDCLSAYSAVNQGHC-HPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5678888886 59999999 99999999999999999 99999999999999877543 34578999999999999
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~-~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.+ .++++|++||+||||+|||+| |.++.+ .|. ..+|.+||+++++|||+|.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~-----------~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGV-----------PEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 666421 121 13567999999999999999888886543332
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. + .+. . .++.++ +|+|. +.+++.+.
T Consensus 161 ~-----~---~~~--~------~~~~~~----------------~~~d~------------------~~le~~i~----- 185 (401)
T PRK00854 161 G-----F---GPF--T------PGFRVV----------------PFGDA------------------EALEAAIT----- 185 (401)
T ss_pred c-----C---CCC--C------CCeEEe----------------CCCCH------------------HHHHHHhC-----
Confidence 1 1 110 0 111122 24543 45666553
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
++++|||+||+ ++.+|.++++++||++|+++|++||++||+|||||||||+|++|+.+++|+.||++++||+|+||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
++|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++ .++.+.+++++.+.|.+. ..
T Consensus 262 ~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~~~----~~~~~~~~~~l~~~L~~~--~~ 329 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEEGM----IENAAEMGAYFLEGLRSI--RS 329 (401)
T ss_pred ccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCH----HHHHHHHHHHHHHHHHhh--cc
Confidence 8899999999999998743 24788999999999999999999977444 444455555555555443 23
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+++|.|+|+.+++..+. .....+...++++||+
T Consensus 330 ~~~~~~~g~g~~~~i~~~~~~-----~~~~~~~~~L~~~GV~ 366 (401)
T PRK00854 330 NIVREVRGRGLMLAVELEPEA-----GGARQYCEALKERGLL 366 (401)
T ss_pred CceEEEeccceEEEEEEecCc-----hhHHHHHHHHHHCCeE
Confidence 456789999999999997642 2456788999999985
No 81
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=432.12 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=277.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++.+++|. |+||.||+ +||||++|+++.++||+ ||+|.+|+++|++++.+.+. .+.++...+++++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dg~----~~lD~~~~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 13 LPVVLKRGKGV--FVWDVEGK----KYYDFLSAYSAVNQGHC-HPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITD 84 (400)
T ss_pred CCccEEeeecC--EEEeCCCC----EEEEcccCHhhccCCcC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHh
Confidence 36688888886 49999999 99999999999999999 99999999999998887653 2357788888888888
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t-~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
+++ .++++|++||+||||+|||++ |.++ .++|. ..++.+||+++++|||++.+++++++...+.
T Consensus 85 ~~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~-----------~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~ 149 (400)
T PTZ00125 85 LFG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGI-----------PENQAKIIFCNGNFSGRTIGACSASTDPKCY 149 (400)
T ss_pred CCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCCeEEEECCCcCCccHHHHhhcCCcchh
Confidence 765 579999999999999999999 5442 22221 0246799999999999999999998643221
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
.. +.+.. +++.. ++|+|. +.+++.++
T Consensus 150 ~~--------~~~~~--------~~~~~----------------~~~~d~------------------~~le~~l~---- 175 (400)
T PTZ00125 150 NN--------FGPFV--------PGFEL----------------VDYNDV------------------EALEKLLQ---- 175 (400)
T ss_pred cc--------CCCCC--------CCceE----------------eCCCCH------------------HHHHHHhC----
Confidence 11 00000 01111 124443 55666664
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCC
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~Lgg 693 (817)
.+++++|++||+ ++.+|+++++++|+++|+++|++||++||+|||+|||||+|++++.+++++.||++|+||++++
T Consensus 176 ---~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~ 251 (400)
T PTZ00125 176 ---DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSG 251 (400)
T ss_pred ---CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccC
Confidence 246999999998 9999999999999999999999999999999999999999999999899999999999999999
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
|+.|+|++++++++++.+... .+++||+++|++|+++.++|++++++++ .++.+++++++++++.+++..
T Consensus 252 g~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~~~l~~i~~~~~----~~~~~~~~~~l~~~l~~l~~~ 321 (400)
T PTZ00125 252 GLYPISAVLANDDVMLVIKPG------EHGSTYGGNPLACAVAVEALEVLKEEKL----AENAQRLGEVFRDGLKELLKK 321 (400)
T ss_pred CCcCcEEEEEcHHHHhhccCC------CCCCCCCcCHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHhc
Confidence 977999999999999987432 3678999999999999999999987544 444555666666677666677
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.++||.|+|.++++..+. ......+...++++||+
T Consensus 322 ~~~~~~~~~~g~~~~v~~~~~~----~~~~~~~~~~l~~~Gv~ 360 (400)
T PTZ00125 322 SPWVKEIRGKGLLNAIVFDHSD----GVNAWDLCLKLKENGLL 360 (400)
T ss_pred CCCeEEEecccEEEEEEEccCc----chHHHHHHHHHHHCCeE
Confidence 7888899999999999997531 13456678888899974
No 82
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=3.2e-46 Score=418.15 Aligned_cols=332 Identities=22% Similarity=0.265 Sum_probs=267.3
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|.++++++|. |+||.||+ +|||+.||+++.++|| ||+|.+|+.+|++++.+.. ....++...+++++|..
T Consensus 11 ~~~~~~~~~G~--~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 81 (375)
T PRK04260 11 AAIEFVKAEGN--YLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIG 81 (375)
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhc
Confidence 46788888886 59999999 9999999999999999 6899999999999865432 23457777888887765
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
.. ..+++|++||+|||+.|+|+| |.+++ |.+||+++++|||++.+++++++...++.
T Consensus 82 ~~----~~~~~~~~SGseA~~~Al~~a-r~~~~------------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~ 138 (375)
T PRK04260 82 DK----DYLAFFCNSGAEANEAAIKIA-RKATG------------------KQEIITFQNSFHGRTFGSMSATGQDKIKD 138 (375)
T ss_pred Cc----CCEEEEcCccHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCcccHHHHhccCCcccCC
Confidence 21 236899999999999999999 66654 35899999999999999999987654333
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
+ +++. ++. + + ...|||. +.+++.+.
T Consensus 139 ~--------~~~~--~~~---------~--~-----------~~~~~dl------------------~~l~~~l~----- 163 (375)
T PRK04260 139 G--------FGDG--VPH---------F--S-----------YAIFNDL------------------NSVKALVN----- 163 (375)
T ss_pred C--------CCCC--CCC---------e--E-----------EeCCCCH------------------HHHHHhcC-----
Confidence 2 1110 000 0 0 0113442 44555543
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
+++++|++||+ ++++|+++++++|+++++++|+++|+++|+|||+|||||+|.++.++++++.||++||||+||+|
T Consensus 164 ---~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 239 (375)
T PRK04260 164 ---KNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG 239 (375)
T ss_pred ---CCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999988988999999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .+.+||++||++|+++.++|++++++++.+++. ..++++++.+.+.+.++
T Consensus 240 -~~ig~~~~~~~~~~~~~~~------~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 308 (375)
T PRK04260 240 -VPVGAMLAKSSLGGAFGYG------SHGSTFGGNKLSMAAASATLDIMLTAGFLEQAL----ENGNYLQEQLQKALQDK 308 (375)
T ss_pred -cceEEEEEcHHHHhhcCCC------CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHhhC
Confidence 7999999999999888532 478899999999999999999998755555544 44555555666777788
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+..|+|.|++++++|... ...+.+.++++||+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gi~ 342 (375)
T PRK04260 309 ETVTTVRGLGYMIGIETTAD--------LSQLVEAARDKGLI 342 (375)
T ss_pred CCeeEEeccceEEEEEecCc--------HHHHHHHHHhCCCE
Confidence 88889999999999999432 35788999999985
No 83
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=100.00 E-value=2.9e-45 Score=414.15 Aligned_cols=376 Identities=27% Similarity=0.394 Sum_probs=292.2
Q ss_pred hhhcCcccccCCCCCCCCCCCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc
Q 003472 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (817)
Q Consensus 355 ~~~~~~l~~p~~~~~~~~~~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~ 434 (817)
+++++.+|++++ . ...|+++++++|. ++||.||+ +||||++|+++.++||+ ||+|++|+++|+++..+
T Consensus 3 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~--~~~d~dG~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT--V---RPYPLVIVRAEGA--YLYDVDGN----RYLDFLSGIGVLNLGHN-HPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc--C---CCCCceEEeeecC--EEEeCCCC----EEEEcCccHHhhccCCC-CHHHHHHHHHHHHhCcC
Confidence 455677888876 1 2457899998886 49999999 99999999999999999 99999999999987665
Q ss_pred cCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcC
Q 003472 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (817)
Q Consensus 435 ~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~g 514 (817)
.....+.++...+|+++|+++.|.+ .++++|++||+|||+.|++++ |.+++ +.+||++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~~~------------------~~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTG------------------RKKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHcC------------------CCeEEEECC
Confidence 4432236899999999999998742 689999999999999999999 66654 358999999
Q ss_pred CccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCch
Q 003472 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (817)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~ 594 (817)
+|||++.+++++++...++.. +. +. ...+..++.+.... ..
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~-----~~-------~~----~~~~~~~~~~~~~~-----------------------~~ 171 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGG-----FG-------PL----LPGVLHVPYPYRYR-----------------------PP 171 (413)
T ss_pred CcCCccHHHHHhcCCcccccc-----CC-------CC----CCCcEEeCCCcccc-----------------------ch
Confidence 999999999999875433321 00 00 01122222221100 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 595 ~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.......+.+++.+++ +++++++||+||+ ++++|.++++++|+++|+++|++||+++|+|||++||||+|.+++
T Consensus 172 ~~~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 172 AELADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0011124667777763 3568999999997 999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 675 ~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
++++++.||++++||++++| +|+|++++++++++.+.. ..+.+++||++||++++++.++|++++++++.+++.
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~- 319 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPA----GPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAA- 319 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH-
Confidence 99999999999999999999 899999999999998711 234578999999999999999999998755545544
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCC--CcchHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNA--GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~--~~~~~~~~~~~~l~~Gv~ 816 (817)
.+++++.+.+.++...++.+.++++.|.++.+++.++.... +......+...++++||+
T Consensus 320 ---~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 380 (413)
T cd00610 320 ---ELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLL 380 (413)
T ss_pred ---HHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeE
Confidence 45555555555555556788889999999999997652111 113556788889999975
No 84
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=2.2e-45 Score=413.40 Aligned_cols=338 Identities=24% Similarity=0.356 Sum_probs=276.1
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhh
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~ 455 (817)
|+++++++|. ++||.||+ +||||.+|++++++||+ ||+|.+|+.+|+++..+... .+.++...+|+++|++.
T Consensus 22 ~~~~~~~~G~--~~~d~dg~----~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVRGEGA--RLWDDDGK----EYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAKLIHTSN-LYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 6788898886 49999999 99999999999999999 99999999999998765432 35688999999999998
Q ss_pred cCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCc
Q 003472 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (817)
Q Consensus 456 ~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~ 535 (817)
.+ .++++|++||+||++.|+|++ +.++++.+ .++.+|++++++|||.+..++++++...++.+
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~-------------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKG-------------IEKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccC-------------CCCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 77776543 23468999999999999999999875543321
Q ss_pred CCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 003472 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (817)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~ 615 (817)
+. +. .+++..+ +|+|. +.+++.+.
T Consensus 157 -----~~---~~--------~~~~~~~----------------~~~d~------------------~~l~~~i~------ 180 (396)
T PRK02627 157 -----FE---PL--------VEGFIYV----------------PFNDI------------------EALKAAIT------ 180 (396)
T ss_pred -----CC---CC--------CCCceEe----------------CCCCH------------------HHHHHhcC------
Confidence 00 00 0111111 23442 44555552
Q ss_pred CCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCC
Q 003472 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (817)
Q Consensus 616 ~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy 695 (817)
+++++||+||+ ++.+|+.+++++|+++|+++|++||++||+|||++||||+|++++++++++.||++||||++++|
T Consensus 181 --~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 181 --DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 46899999998 99999889999999999999999999999999999999999998888999999999999999999
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++ .++.+.+++++++.+.+++.++|
T Consensus 257 ~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~ 326 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEGL----LENAAEVGEYLRAKLRELLEKYP 326 (396)
T ss_pred cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999988743 24788999999999999999999987444 44455555656666666667788
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++|.|+++++++.. ....+...++++||+
T Consensus 327 ~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~Gv~ 359 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDR--------PAAEIVKKALEKGLL 359 (396)
T ss_pred CeeeeccCcEEEEEEecC--------cHHHHHHHHHHCCeE
Confidence 888999999999999932 246788999999985
No 85
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=377.60 Aligned_cols=367 Identities=18% Similarity=0.209 Sum_probs=276.5
Q ss_pred eecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHH-HHHhc-----cccCCCCCCChHHHHHHHHHHh
Q 003472 381 SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGY-TAARF-----GHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 381 ~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~-q~~~~-----~~~~~~~~~~~~~~eLae~L~~ 454 (817)
+..|.| ++|+||| .+||..+.+.++.+||| ||.+++++.. |..+. ....++ ..+.+..|-+-|..
T Consensus 64 kS~GNY--lvDvDGN----~lLDvYsQIsSvplGYn-~P~LvK~a~~p~~~~~lvnRPALg~fP--~kd~~~~l~~~ll~ 134 (484)
T KOG1405|consen 64 KSIGNY--LVDVDGN----RLLDVYSQISSVPLGYN-NPALVKAAQQPQNATMLVNRPALGNFP--PKDFAEKLRQSLLS 134 (484)
T ss_pred hhcCce--EEecCCC----eeehhhhhhcccccCCC-CHHHHHHhcChHHHHHHhccccccCCC--hhhHHHHHHHHHHh
Confidence 456875 9999999 99999999999999999 9999999873 33321 111111 13344445555555
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCC-------ccccccceEEEEEcCCccCCccccccc
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKD-------TTEKCIELKVLALKGSYHGDTLGAMEA 526 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~-~~G~~~~~~~~~-------~~~~~~r~~II~~~gsyHG~t~galsl 526 (817)
..|+| .+.|++.-+||+|||+|+|.|+-+|.. ++|.. +...+. .++......|++|+|+|||+|++++|.
T Consensus 135 ~APKG-~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~-~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lst 212 (484)
T KOG1405|consen 135 IAPKG-QKQVITMLCGSCANENAYKTAFIWYRAKERGQA-GFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLST 212 (484)
T ss_pred hCcch-HHHHHHHhccccccHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHhcCCCCCCceeeeeecccccccccccccc
Confidence 67877 788999999999999999999755542 33321 111100 113334568999999999999999999
Q ss_pred cCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHH
Q 003472 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (817)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~ 606 (817)
|.....+.. .-|.|+||...+. ...+| ... .+.+| ....+.|++.+|+
T Consensus 213 T~SKpIHKl--------diPaFdWPiA~fP----~ykYP--Lde------nv~~N------------~ked~~Cl~~Ve~ 260 (484)
T KOG1405|consen 213 THSKPIHKL--------DIPAFDWPIAPFP----RYKYP--LDE------NVAEN------------KKEDQGCLAEVED 260 (484)
T ss_pred ccCcccccc--------CCCCCCCCCCCCc----cccCC--hhh------hhhhh------------hhhhhhHHHHHHH
Confidence 977655542 2244666654321 11111 100 11122 2234567889999
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC--CCce
Q 003472 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI 684 (817)
Q Consensus 607 ~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv--~PDi 684 (817)
.|.++. .....|||+||||| |++||....+++|++.||++|++||+.+|+||||||-|-||++|+++||++ .||+
T Consensus 261 li~~~~--~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~ 337 (484)
T KOG1405|consen 261 LIVKYR--KKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDV 337 (484)
T ss_pred HHHHHh--hcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccc
Confidence 998753 23357999999998 999999999999999999999999999999999999999999999999998 4899
Q ss_pred eeccccc-CCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHH
Q 003472 685 ACYGKLL-TGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELW 763 (817)
Q Consensus 685 vtlgK~L-ggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l 763 (817)
|||+|.+ +|||+ -. +.|... .++.+-+||.|+|.-+-...+++++|++ +.|.++++..|..|
T Consensus 338 vTFSKK~q~gGff------h~----~~frpn---~pYrifNTWmGdP~k~lll~~vv~~I~~----~~Ll~n~~~vG~~l 400 (484)
T KOG1405|consen 338 VTFSKKFQTGGFF------HD----EEFRPN---EPYRIFNTWMGDPSKNLLLEEVVQEIKR----EDLLNNVAHVGKAL 400 (484)
T ss_pred eehhhhhhcCccc------cC----cccCCC---chHHHhhhhcCChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHH
Confidence 9999987 46752 12 223222 2456779999999999999999999999 67777888899999
Q ss_pred HHHHHHHHHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 764 DLELIQQISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 764 ~~~l~~~l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.++|.++.+++|. +.++||+|.++++++.+. ...+.|+..+.-+|++
T Consensus 401 ~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~------~~Rdk~i~~~~~nGv~ 448 (484)
T KOG1405|consen 401 LKGLLELQAKYPGKINNLRGRGTFIAWDCPSG------SIRDKLILIARLNGVN 448 (484)
T ss_pred HHHHHHHHHhCchhhhcccccceEEEEeCCCh------HHHHHHHHHHHHcCce
Confidence 9999999999995 889999999999999887 5778888888888874
No 86
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-38 Score=326.44 Aligned_cols=198 Identities=31% Similarity=0.406 Sum_probs=173.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCC---CcHHHHHHhCCCCccccCCCccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD---SDSRFLFTKLPSLSLRRNFPSSLIL 112 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (817)
+|++||||||+||||||++|++|+++|+ .+|+++.+|||||+|+.+. +|+.++++..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~--------------- 60 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQRLS--------------- 60 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHHhc---------------
Confidence 4789999999999999999999999995 8899999999999998765 4666666553
Q ss_pred ccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCC
Q 003472 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (817)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (817)
+.+.+|+. +|+|.|++|.|||+|++.+ |+.+
T Consensus 61 -----------------~~~~~~~~-------------------------------~~py~f~~P~sPhlAa~~e-g~~I 91 (223)
T COG0132 61 -----------------GLDLSYEL-------------------------------INPYRFKEPLSPHLAAELE-GRTI 91 (223)
T ss_pred -----------------CCCccccc-------------------------------ccceecCCCCCcHHHHhhc-CCcc
Confidence 33444544 8899999999999999999 9999
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
+.+.+.+.+.++.+. +|+||||||||+++|++++.+.+|+++.+++|||||++.++|+|||+++++|
T Consensus 92 ~~~~l~~~l~~l~~~-------------~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 92 DLEKLSQGLRQLLKK-------------YDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred cHHHHHHHHHhhhcc-------------cCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 999999998887755 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
+++++|+++.|||+|+..+. ....+++.+ +.|++| +|+.++..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~--~~p~~g~~p~~~~~~ 208 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRI--GAPLLGIIPYLPESE 208 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhc--CCCccccccCCcccc
Confidence 99999999999999998322 222455666 999999 99987754
No 87
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=100.00 E-value=7.2e-37 Score=342.13 Aligned_cols=338 Identities=27% Similarity=0.369 Sum_probs=264.5
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHh
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~ 454 (817)
.|+++++++|.+ +||.||+ +||||++|+|+++|||+ ||.|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 9 ~~~~~~~~~g~~--~~~~~g~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 80 (379)
T TIGR00707 9 LPVKIVRGKGAY--VYDVNGK----EYLDFVAGIAVNSLGHA-HPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVE 80 (379)
T ss_pred CCccEEEeecCE--EEeCCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHh
Confidence 467889988875 8999999 99999999999999999 9999999999999876533 23467889999999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+ .+++++++||++|++.|++++ |.+++..| +.+.+|++++.+|||.+..+...++...+..
T Consensus 81 ~~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~-------------~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 81 HSG---ADRVFFCNSGAEANEAALKLA-RKYTGDKG-------------KEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccC-------------CCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 987 469999999999999999998 67665321 2246899999999999998887776443221
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
. ..+.. .+... ++|||. +.+++.+.
T Consensus 144 ~-~~~~~---------------~~~~~----------------~~~~d~------------------~~l~~~~~----- 168 (379)
T TIGR00707 144 G-FEPLV---------------PGFSY----------------APYNDI------------------ESLKKAID----- 168 (379)
T ss_pred c-CCCCC---------------CCcee----------------eCCCCH------------------HHHHHHhh-----
Confidence 1 00000 00000 124443 44555554
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCC
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggG 694 (817)
.++.+|++||+ ++.+|..+++.+++++|+++|++||+++|+||+++|||++|+++..+.+++.||++|+||++++|
T Consensus 169 ---~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 244 (379)
T TIGR00707 169 ---DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG 244 (379)
T ss_pred ---hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC
Confidence 25789999998 99999988899999999999999999999999999999999877777889999999999999999
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|+|++++++++++.+... .++.+|++||++++++.++|+.++++++.+++.++.+.+ .+++.+.....
T Consensus 245 -~riG~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~ 313 (379)
T TIGR00707 245 -VPIGATLAKEEVAEAFTPG------DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF----KERLEELGKNY 313 (379)
T ss_pred -cccEEEEEcHHHHhhhcCC------CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHhhC
Confidence 8999999999999888532 366789999999999999999997655555555544444 44444444444
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+ +..+++.|.++.+++.++ ...+...++++||+
T Consensus 314 ~-~~~~~~~g~~~~~~~~~~--------~~~~~~~l~~~Gv~ 346 (379)
T TIGR00707 314 P-NKEVRGKGLMLGIELEAP--------CKDIVKKALEKGLL 346 (379)
T ss_pred C-CCccccCceEEEEEecCc--------HHHHHHHHHHCCcE
Confidence 3 356778899999988643 25778888999974
No 88
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=100.00 E-value=7.6e-35 Score=298.37 Aligned_cols=197 Identities=35% Similarity=0.466 Sum_probs=162.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchh
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (817)
|+|||+||+|++|||+||+||+++|. ++|.+|+|||||+++...+.|..++.+.+ ++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~----------------- 57 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GL----------------- 57 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CT-----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CC-----------------
Confidence 58999999999999999999999995 89999999999999988888999887765 33
Q ss_pred hhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHH
Q 003472 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (817)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (817)
+.++ ...++|.|++|.+|+++++.+ +..+..+++
T Consensus 58 --------------~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 58 --------------SEPP-------------------------------DDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp --------------CCCH-------------------------------HHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred --------------Cccc-------------------------------ccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 1111 226799999999999999988 777777777
Q ss_pred HHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC
Q 003472 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (817)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~ 277 (817)
. ++++.++ +|++||||+||+++|...+.+|+|||+.+++|||||++.++|+++|++++++.++.+
T Consensus 92 ~--~~~l~~~-------------~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEE-------------YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTT-------------TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhc-------------CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 6 5555544 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 003472 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (817)
Q Consensus 278 ~~~v~gvi~n~~-~~~~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (817)
|++++|||+|++ .+++.+++++++ ++||+| ||+.+++++|+
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~~--~i~vlg~iP~~~~L~~p~ 199 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREKS--GIPVLGVIPEDPDLSAPT 199 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHHH--CCEECE---SSTT-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHhC--CCCEEEECCCCcccccCC
Confidence 999999999998 556888899998 999999 99999998764
No 89
>PRK07505 hypothetical protein; Provisional
Probab=99.98 E-value=3.9e-31 Score=299.08 Aligned_cols=314 Identities=10% Similarity=-0.032 Sum_probs=220.0
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCC-CCCCHHHHHHHHHHHHhccc--c-CC-CCCCChHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MF-PENVYEPALECAE 450 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LG-h~~hP~V~~Ai~~q~~~~~~--~-~~-~~~~~~~~~eLae 450 (817)
++.+.+++|. ++||.||+ +||||+| +.++| |+ ||+|++|+++|++++++ . .. ....++...+|++
T Consensus 29 ~~~~~~~~G~--~~~d~~g~----~~ld~~s---~~~lgl~~-~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~ 98 (402)
T PRK07505 29 GLTVGEREGI--LITLADGH----TFVNFVS---CSYLGLDT-HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEE 98 (402)
T ss_pred cceeeccCCc--cEEecCCc----eEEEeec---CCccCCCC-CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHH
Confidence 4577788786 59999999 9999998 67999 99 99999999999998752 1 11 1134778999999
Q ss_pred HHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC
Q 003472 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (817)
Q Consensus 451 ~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~ 530 (817)
+|+++++ . ++++++||++||+.|+|++ +.... . .++.++|+++++|||+.... .
T Consensus 99 ~la~~~~---~-~~~~~~sG~~a~~~ai~~~-~~~~~-~--------------~~~~~vi~~~~~~H~s~~~~------~ 152 (402)
T PRK07505 99 ALSELFG---A-SVLTFTSCSAAHLGILPLL-ASGHL-T--------------GGVPPHMVFDKNAHASLNIL------K 152 (402)
T ss_pred HHHHHhC---C-CEEEECChHHHHHHHHHHH-Hhccc-C--------------CCCCCEEEEchhhhHhHHhh------h
Confidence 9999987 3 7888999999999999998 32110 0 23568999999999943211 1
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
..... + + ++..+ +|+|. +.+++.+++
T Consensus 153 ~~~~~---------~-----~------~v~~~----------------~~~d~------------------~~l~~~~~~ 178 (402)
T PRK07505 153 GICAD---------E-----T------EVETI----------------DHNDL------------------DALEDICKT 178 (402)
T ss_pred hhhhc---------C-----C------eEEEe----------------CCCCH------------------HHHHHHHhc
Confidence 00000 0 0 11111 13443 345555542
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee--eccccccccchhhhcCC-CCcee--
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA-- 685 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~--TGfGRtG~~~a~e~~gv-~PDiv-- 685 (817)
...+++|+||+ ++.|++.+ +++|+++|++||++||+||+| +|+||+|.+++.+++++ .||.+
T Consensus 179 -------~~~~~vl~~p~-~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~ 245 (402)
T PRK07505 179 -------NKTVAYVADGV-YSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTII 245 (402)
T ss_pred -------CCCEEEEEecc-cccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEE
Confidence 34789999998 88876554 799999999999999999998 78999999988899998 78865
Q ss_pred --ecccccCCCCCcceEEE-echHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCchhcHHHHHHHHH
Q 003472 686 --CYGKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNIIPERRILR 760 (817)
Q Consensus 686 --tlgK~LggGy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l~~~l~~~~~~lg 760 (817)
+++|++|++ .|.++ .++++.+.+.. +.+.+||+++ +++|++++++++++.++ .+.++.+.+.
T Consensus 246 ~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~aa~~a~l~~~~~~----~~~~~~~~l~ 312 (402)
T PRK07505 246 AASLGKAFGAS---GGVIMLGDAEQIELILR------YAGPLAFSQSLNVAALGAILASAEIHLSE----ELDQLQQKLQ 312 (402)
T ss_pred EEechhhhhcc---CeEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHHHHHHHHHHHHhcc----CcHHHHHHHH
Confidence 799998863 13344 47788888743 2467788776 58999999999988763 3333333443
Q ss_pred HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.. +... ...+++|.|+++......+ ......+...++++||+
T Consensus 313 ~~~~~-~~~~-----~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~l~~~Gi~ 357 (402)
T PRK07505 313 NNIAL-FDSL-----IPTEQSGSFLPIRLIYIGD-----EDTAIKAAKQLLDRGFY 357 (402)
T ss_pred HHHHH-HHHH-----HHhcCCCCCCCEEEEEeCC-----HHHHHHHHHHHHHCCCe
Confidence 33221 1111 1234688888764433222 12456788999999985
No 90
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.97 E-value=1.2e-30 Score=273.70 Aligned_cols=201 Identities=21% Similarity=0.220 Sum_probs=162.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CCcHHHHHHhCCCCccccCCCccc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSSL 110 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~~ 110 (817)
|++|||+||+|++|||+||++|+++|+ ++|++|+|||||++|+.. +.|+.++.+.+
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~------------- 63 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVS------------- 63 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCCCchHHHHHHHHhc-------------
Confidence 568999999999999999999999994 899999999999998632 23444444432
Q ss_pred ccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCC
Q 003472 111 ILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190 (817)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~ 190 (817)
..+.|++. ++||.|+.+. +++.+ +.
T Consensus 64 -------------------~~~~~~~~-------------------------------~~p~~~~~~~----a~~~~-~~ 88 (231)
T PRK12374 64 -------------------SIELPYEA-------------------------------VNPIALSEEE----SSVAH-SC 88 (231)
T ss_pred -------------------CCCCCHHh-------------------------------ccCeecCCCc----ChHHc-CC
Confidence 33344433 6778776543 34555 66
Q ss_pred CCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHH
Q 003472 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270 (817)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~ 270 (817)
.++.++|.+.++++.++ +|+||||||||+++|+.......|+++.+++|+|||++.++|++||++++
T Consensus 89 ~i~~~~i~~~~~~l~~~-------------~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lLt 155 (231)
T PRK12374 89 PINYTLMSNGLANLSEK-------------VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLT 155 (231)
T ss_pred cCCHHHHHHHHHHHHhh-------------CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHHH
Confidence 77889999999876654 99999999999999998888899999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 003472 271 YESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (817)
Q Consensus 271 ~~~l~~~~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l 325 (817)
++.++.++++++|||+|++.+. +.+.+++.. ++|++| ||+.+.+....+.+|+
T Consensus 156 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~--~~~~lg~iP~~~~~~~~~~~~~l 215 (231)
T PRK12374 156 AQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKL--PAPLIGELPYLPRAEQRELGQYI 215 (231)
T ss_pred HHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhc--CCCEEEEeCCCCCCChHHHHhhc
Confidence 9999999999999999998432 234455555 899999 9999887655555554
No 91
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=263.15 Aligned_cols=203 Identities=29% Similarity=0.382 Sum_probs=169.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC---CCCcHHHHHHhCCCCccccCCCcccccccc
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP---HDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (817)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|.. .+.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999995 89999999999999864 244777766654 22
Q ss_pred hhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChH
Q 003472 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (817)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (817)
..++ ..++++.|..|.+|+.++..+ +..++.+
T Consensus 60 ----------------~~~~-------------------------------~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------PLDY-------------------------------EDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------CCCh-------------------------------hhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 1112 236799999999999999988 7788889
Q ss_pred HHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 003472 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (817)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~ 275 (817)
++.+.++++.++ +|+|||||+||+.+|+..+.+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~-------------~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQ-------------YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhh-------------CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 999999876544 9999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEccCCCC-------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 003472 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (817)
Q Consensus 276 ~~~~~v~gvi~n~~~~~-------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~~~~~l 325 (817)
.++.++.|+|+|++... +.+.+++++ ++|++| +|+++......+.+++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~--gi~vlg~ip~~~~~~~~~~~~~~ 214 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERLL--PAPLLGELPYLAEAELAAAAEYL 214 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHHc--CCCeEEecCCCCCcchHHHHhhC
Confidence 99999999999998433 455666666 999999 9997665433444443
No 92
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.96 E-value=4.1e-28 Score=274.89 Aligned_cols=296 Identities=13% Similarity=0.038 Sum_probs=213.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++|+|+| |.+||.++||+|++|+++|++++++.. .....++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999999 999999669999999999999987532 1223466889999999999983 68999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
+|++...+.+ +.++|.++..|||++..++..++....
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~~----------------------- 156 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEKR----------------------- 156 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeEE-----------------------
Confidence 9999541211 236899999999999887766532100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
. ++|+|. +.+++.++. ..+.++++|++|++ +++.|.
T Consensus 157 -----~----------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 157 -----I----------------FRHNDP------------------ADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred -----E----------------eCCCCH------------------HHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 0 113332 234445543 11346789999998 999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCCC--Ccee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv~--PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.| +++|+++|+++|+++|+||+|+ |+ |++|.++ .+++++. +||+ |+||++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~~GG~-----~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGVMGGY-----ITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcccCce-----eeCCHHH
Confidence 988 9999999999999999999997 77 8999766 4777875 6887 9999998 565 6788998
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++++|++|+++.++|+.+++... . .++....+++|.+.+.+. ..+ .+++.|.|+
T Consensus 263 ~~~l~~~~~----~~~~t~~~~p~~~aa~~aaL~~~~~~~~-~--~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~i~ 330 (406)
T PRK13393 263 CDFIRSFAS----GFIFTTSLPPAVAAGALASVRHLKASSA-E--RERHQDRVARLRARLDKA--GIP---HLPNPSHIV 330 (406)
T ss_pred HHHHHHhCc----CceecCccCHHHHHHHHHHHHHHhhCHH-H--HHHHHHHHHHHHHHHHHc--CCC---cCCCCCCeE
Confidence 888754321 1235788999999999999999865321 1 122233444444443321 233 246788898
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+...+++ +||+
T Consensus 331 ~v~~~~~------~~~~~l~~~L~~~~Gi~ 354 (406)
T PRK13393 331 PVMVGDP------VLCKQISDELLDRYGIY 354 (406)
T ss_pred EEEeCCH------HHHHHHHHHHHHhCCEE
Confidence 8866332 245667777887 4875
No 93
>PLN02822 serine palmitoyltransferase
Probab=99.96 E-value=2e-28 Score=282.71 Aligned_cols=320 Identities=14% Similarity=0.159 Sum_probs=223.0
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~ 451 (817)
.++++++.|.+ ++ .+|+ +||||.+ +.++|...||+|++|+.+++++++.... ..++++.+.+|+++
T Consensus 93 ~~~~~~~~G~~--i~-~~G~----~~id~~s---~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~ 162 (481)
T PLN02822 93 PPVLESAAGPH--TI-INGK----DVVNFAS---ANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETK 162 (481)
T ss_pred CCceecCCCCe--EE-ECCc----eEEEeEC---CCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHH
Confidence 44788888876 55 6999 9999998 5566765599999999999999875321 23467889999999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
|+++++.+ +.++|+ +|+.++.+|++.. .+|.++|.++..||+++..++.+++...
T Consensus 163 La~~~~~~--~~i~~s-~G~~a~~sai~a~----------------------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~ 217 (481)
T PLN02822 163 IAKFLGTP--DSILYS-YGLSTIFSVIPAF----------------------CKKGDIIVADEGVHWGIQNGLYLSRSTI 217 (481)
T ss_pred HHHHhCCC--CEEEEC-CHHHHHHHHHHHh----------------------CCCCCEEEEeCCccHHHHHHHHHcCCeE
Confidence 99999853 445555 5666888877744 2345788899999999888777764321
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
. . +.|||+ +.++..+++.
T Consensus 218 ~----------------------------~----------------~~~nd~------------------~~l~~~l~~~ 235 (481)
T PLN02822 218 V----------------------------Y----------------FKHNDM------------------ESLRNTLEKL 235 (481)
T ss_pred E----------------------------E----------------ECCCCH------------------HHHHHHHHHH
Confidence 0 0 114543 1222222211
Q ss_pred CCC-CCCCcE-EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee--ccccccccchhhhcCC---CCce
Q 003472 612 PGL-KVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDI 684 (817)
Q Consensus 612 ~~~-~~~~~i-AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T--GfGRtG~~~a~e~~gv---~PDi 684 (817)
... ....++ ++||+|++ +++.|.+.+ +++|+++|++||++||+||+|+ .+||+|.+ .++++|+ +|||
T Consensus 236 ~~~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~di 309 (481)
T PLN02822 236 TAENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDI 309 (481)
T ss_pred hhhhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeE
Confidence 000 001234 89999998 899999988 8999999999999999999998 46788876 6799998 7899
Q ss_pred ee--cccccC--CCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcC-cCchhcHHHHHH
Q 003472 685 AC--YGKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKD-PQTNHNIIPERR 757 (817)
Q Consensus 685 vt--lgK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~-~~l~~~l~~~~~ 757 (817)
++ |||++| ||| +++++++++.+... .+++||+++ |..|+||+++|+.+++ ++..++++++++
T Consensus 310 i~~s~sKalg~~GG~-----i~g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~ 378 (481)
T PLN02822 310 ITAAMGHALATEGGF-----CTGSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIA 378 (481)
T ss_pred EEecchhhhhhCCeE-----EEcCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 87 889998 774 88999999987532 477899887 9999999999999865 445555665555
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCC--CCcchHHHHHHHHH-HcCCC
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCN--AGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~--~~~~~~~~~~~~~l-~~Gv~ 816 (817)
.+.+ ++.+. ...+. ..-+.+.++-+.+.+.... .+......|...++ ++||+
T Consensus 379 ~l~~----~L~~~-~g~~~--~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~ 433 (481)
T PLN02822 379 LLHK----GLSDI-PGLSI--GSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVL 433 (481)
T ss_pred HHHH----HHHhc-CCccc--CCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEE
Confidence 5444 33221 11111 1123466667777432100 11134567888988 88875
No 94
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.95 E-value=1e-26 Score=262.90 Aligned_cols=296 Identities=16% Similarity=0.098 Sum_probs=210.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++++|+| |++||.+.||+|++|+.+|++++++... ..+.++...+|+++|+++++. +++++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999999 9999998899999999999999876421 224578899999999999973 67999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++++. .+ .+..+|..+..||+++..++..++.+...
T Consensus 120 ~ai~~l~-~~-------------------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~---------------------- 157 (402)
T TIGR01821 120 ATLATLA-KI-------------------IPGCVIFSDELNHASMIEGIRHSGAEKFI---------------------- 157 (402)
T ss_pred HHHHHhh-CC-------------------CCCCEEEEcchHhHHHHHHHHHcCCeEEE----------------------
Confidence 9999982 11 12367888889999887776655321100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
++++|. +.+++.++. ..++++++|++|++ ++..|.
T Consensus 158 ----------------------~~~~d~------------------~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 158 ----------------------FRHNDV------------------AHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred ----------------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 012332 345555543 12335789999998 899999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCC--CCcee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.| +++|+++|++||++||+||+|+ | +|++|.+ ..+++++ .||++ |++|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~~~~div~~t~sKa~g~~GG~-----i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLMHRIDIIEGTLAKAFGVVGGY-----IAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCCCCCeEEEEechhhhccCCce-----eecCHHH
Confidence 887 9999999999999999999997 5 3566653 3467776 47888 9999998 564 7889999
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++.+|++|++++++|+.+++. +.+.++....++++.+.+.+. ..+.+. ..|.++
T Consensus 263 ~~~l~~~~~----~~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~--g~~~~~---~~~~i~ 330 (402)
T TIGR01821 263 IDAIRSYAP----GFIFTTSLPPAIAAGATASIRHLKES---QDLRRAHQENVKRLKNLLEAL--GIPVIP---NPSHIV 330 (402)
T ss_pred HHHHHHhCc----CceecCcCCHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHc--CCCcCC---CCCCEE
Confidence 988854221 13457789999999999999999763 222333334444444443321 233332 246677
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+..++++ +||+
T Consensus 331 ~i~~~~~------~~a~~~~~~L~~~~Gi~ 354 (402)
T TIGR01821 331 PVIIGDA------ALCKKVSDLLLNKHGIY 354 (402)
T ss_pred EEEeCCH------HHHHHHHHHHHhcCCEE
Confidence 7765322 244567777775 4874
No 95
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=5.3e-27 Score=260.38 Aligned_cols=298 Identities=15% Similarity=0.102 Sum_probs=232.5
Q ss_pred ccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeC
Q 003472 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSD 468 (817)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~ 468 (817)
+|+ +++||+| |++||.++||+|++|+.+++++++... ...++++.+.+|+++|++++| .+++++++
T Consensus 37 ~~~----~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~ 106 (388)
T COG0156 37 DGR----KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFS 106 (388)
T ss_pred CCc----eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEc
Confidence 477 9999999 999999999999999999999976543 234568999999999999998 57999999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCcccc
Q 003472 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (817)
Q Consensus 469 SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (817)
||+.||.+++... .++.++|..|.-.|.+.+.+..+++...++.
T Consensus 107 SGy~AN~~~i~~l----------------------~~~~dli~~D~lnHASiidG~rls~a~~~~f-------------- 150 (388)
T COG0156 107 SGFVANLGLLSAL----------------------LKKGDLIFSDELNHASIIDGIRLSRAEVRRF-------------- 150 (388)
T ss_pred ccchhHHHHHHHh----------------------cCCCcEEEEechhhhhHHHHHHhCCCcEEEe--------------
Confidence 9999999999988 3457999999999999999999886543321
Q ss_pred CCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003472 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (817)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV 628 (817)
.|||+ ++||+.|++.. ..++ +...|++|.|
T Consensus 151 ------------------------------~HnD~------------------~~Le~~l~~~~-~~~~-~~~~IvtegV 180 (388)
T COG0156 151 ------------------------------KHNDL------------------DHLEALLEEAR-ENGA-RRKLIVTEGV 180 (388)
T ss_pred ------------------------------cCCCH------------------HHHHHHHHhhh-ccCC-CceEEEEecc
Confidence 16664 67888887521 0122 5679999998
Q ss_pred cccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCc---ee--ecccccCC--CCCcce
Q 003472 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLTG--GVIPLA 699 (817)
Q Consensus 629 ~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PD---iv--tlgK~Lgg--Gy~Pls 699 (817)
.+|.|.+.| |++|.+||++||+.|++||+| |+|-.|+ .+.++++|+.|+ |+ ||||+||+ ||
T Consensus 181 -fSMdGdiAp----L~~l~~L~~ky~a~L~VDEAH-a~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~---- 250 (388)
T COG0156 181 -FSMDGDIAP----LPELVELAEKYGALLYVDEAH-AVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY---- 250 (388)
T ss_pred -ccCCCCcCC----HHHHHHHHHHhCcEEEEEccc-cccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce----
Confidence 899999999 999999999999999999999 6777886 567789999865 33 99999994 54
Q ss_pred EEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 003472 700 ATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQ 778 (817)
Q Consensus 700 Avl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~ 778 (817)
+++++.+.|++...++ .+.+|.+-.|..++++.++|+++++ ++.+++++++++.+.+.+... .++.
T Consensus 251 -v~g~~~~~d~L~~~ar----~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~------~~~~-- 317 (388)
T COG0156 251 -IAGSAALIDYLRNRAR----PFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL------GLVL-- 317 (388)
T ss_pred -eeCcHHHHHHHHHhCC----ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc------CCcc--
Confidence 9999999999987543 4678889999999999999999975 567788888777766322211 1111
Q ss_pred eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 779 RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 779 ~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....=-+.-+.+.++ ..+..+...++++||+
T Consensus 318 -~~s~s~I~pv~~gd~------~~a~~~s~~l~~~Gi~ 348 (388)
T COG0156 318 -LPSESPIIPVILGDE------ERALEASRALLEEGIY 348 (388)
T ss_pred -CCCCCCeeeeEeCCH------HHHHHHHHHHHHCCee
Confidence 001111223344443 5678888888888875
No 96
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.95 E-value=1.9e-26 Score=261.11 Aligned_cols=296 Identities=15% Similarity=0.045 Sum_probs=210.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
+++||+| |++||++.||+|++|+.++++++++... ..+.++...+|+++|+++.+. +++++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~---~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGK---EAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCC---CcEEEECcHHHHHH
Confidence 8999999 9999999899999999999999875321 123578899999999999873 67899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++++. .+. +..+|..+..+|++...++.+.+.+..
T Consensus 121 ~ai~~l~-~~~-------------------~~~~i~~~~~~h~s~~~~~~~~~~~~~----------------------- 157 (407)
T PRK09064 121 ATLSTLA-KLI-------------------PDCVIFSDELNHASMIEGIRRSRCEKH----------------------- 157 (407)
T ss_pred HHHHHHh-CCC-------------------CCCEEEEeCcchHHHHHHHHHcCCcEE-----------------------
Confidence 9999982 211 135777777778877666555432100
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
. ++++|+ +.+++.++. ..++++.+|++|++ +++.|.
T Consensus 158 -----~----------------~~~~d~------------------~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 158 -----I----------------FRHNDV------------------AHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred -----E----------------ECCCCH------------------HHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 0 013332 345566653 12246789999998 899998
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCC--CCcee--ecccccC--CCCCcceEEEechHH
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i 707 (817)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .+++++ +||++ ||||++| ||| +++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGY-----IAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCce-----EecCHHH
Confidence 887 9999999999999999999997 7 58998865 567776 58988 9999998 665 7889999
Q ss_pred HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEE
Q 003472 708 FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLC 787 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~ 787 (817)
++.+..... .+.+|++.+|+++++++++|+++++.+ ...++....++++.+.+.+. .++.+. ..+.++
T Consensus 264 ~~~l~~~~~----~~~~t~~~~~~~~~aa~~al~~~~~~~---~~~~~~~~~~~~l~~~L~~~--g~~~~~---~~~~iv 331 (407)
T PRK09064 264 VDAVRSYAP----GFIFTTSLPPAIAAAALASIRHLKESN---EERERHQERAAKLKAALDAA--GIPVMP---NESHIV 331 (407)
T ss_pred HHHHHHhCc----cccccCcCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHc--CCCCCC---CCCCEE
Confidence 887753211 234577899999999999999997632 22334444555554444331 233332 235566
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+.+.+. .....+...+++ +||+
T Consensus 332 ~i~~~~~------~~~~~l~~~L~~~~gi~ 355 (407)
T PRK09064 332 PVMVGDP------EKCKKASDMLLEEHGIY 355 (407)
T ss_pred EEEeCCH------HHHHHHHHHHHHhCCEE
Confidence 6666332 234556666665 4764
No 97
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=259.30 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=208.9
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHHHHhccccCCC----CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHH
Q 003472 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 402 lD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~----~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~A 477 (817)
|||.| |++||.++||++++++.+++++++..+.. ...+....+|+++|+++.+. +.+++++||+.|+.++
T Consensus 1 ~~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSST 74 (392)
T ss_pred CCCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 57777 89999988999999999999987743211 12356788999999999984 6899999999999987
Q ss_pred HHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 lklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
+.... ++.+.|..+...|+++..++.+++...
T Consensus 75 i~~l~----------------------~~GD~Vl~~~~~h~s~~~~~~l~~~~~-------------------------- 106 (392)
T PLN03227 75 VAAFA----------------------KRGDLLVVDRGVNEALLVGVSLSRANV-------------------------- 106 (392)
T ss_pred HHHhC----------------------CCCCEEEEeccccHHHHHHHHHcCCeE--------------------------
Confidence 77651 123556667777777766554432100
Q ss_pred cceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC---CCCCCcEEEEEEccccccCCC
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG---LKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~---~~~~~~iAAvIvEPV~qg~gG 634 (817)
.. +.|+|.+ +. +.+.+.+..... .....+...|++||+ ++++|
T Consensus 107 ----~~--------------~~~~d~~----------~l-----~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G 152 (392)
T PLN03227 107 ----RW--------------FRHNDMK----------DL-----RRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTG 152 (392)
T ss_pred ----EE--------------eCCCCHH----------HH-----HHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCC
Confidence 00 1134321 00 111112211000 001234679999998 99999
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeee--ccccccccchhhhcCCCC----ceeecccccCCCCCcc-eEEEechHH
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPL-AATLATNAV 707 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T--GfGRtG~~~a~e~~gv~P----DivtlgK~LggGy~Pl-sAvl~s~~i 707 (817)
.+++ +++++++|++||++||+||+|+ ++|++|. |+++++|++| ||+++|++ .|+.|+ |++++++++
T Consensus 153 ~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls--k~~g~~gg~v~~~~~~ 225 (392)
T PLN03227 153 TLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE--NAFGSVGGMTVGSEEV 225 (392)
T ss_pred cccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech--hhhhccCcEEecCHHH
Confidence 9988 9999999999999999999997 3455555 6899999999 99987733 332244 556789998
Q ss_pred HhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHH-hcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-
Q 003472 708 FDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKW-FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL- 783 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~-l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~- 783 (817)
++.+.. +.+++||+++ |+.|+|++++++. ++++++.+++.++++++.+ ++.+ ..+|.|.+|||.
T Consensus 226 ~~~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~----~L~~--~~~~~~~~~rg~~ 293 (392)
T PLN03227 226 VDHQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYS----TLTN--SSHPYALKLRNRL 293 (392)
T ss_pred HHHHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHh--cCCcccccccccc
Confidence 887642 2477899987 8888888877755 4554555555555555544 4443 467889999994
Q ss_pred -------eeEEEEEEecCCCCCCc---chHHHHHHHHHHcCCC
Q 003472 784 -------GTLCAIELQAAGCNAGY---CLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 -------Glm~gIel~~~~~~~~~---~~~~~~~~~~l~~Gv~ 816 (817)
|.|++|++.+....... .....+...++++|++
T Consensus 294 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 336 (392)
T PLN03227 294 VITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVA 336 (392)
T ss_pred ccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCE
Confidence 44799999653211100 1345788899999974
No 98
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.95 E-value=2.4e-26 Score=260.61 Aligned_cols=301 Identities=11% Similarity=0.032 Sum_probs=225.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++|||+| |++||.++||+|++|+.+++++|+... ..++.+..+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999999 999999889999999999999998643 334567889999999999998 478999999999999
Q ss_pred HHHHHHHHHhhc---cccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 476 IALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 476 ~AlklA~r~~t~---~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
+++.... .... ..+. ...++..+|..+...|.+...++.++... ..
T Consensus 177 ~~i~aL~-~~~~~~~~~~~----------~~~~~~d~i~~D~~~HaSI~dG~~ls~~~---~~----------------- 225 (476)
T PLN02955 177 AAMVAIG-SVASLLAASGK----------PLKNEKVAIFSDALNHASIIDGVRLAERQ---GN----------------- 225 (476)
T ss_pred HHHHHHh-hcccccccccc----------ccCCCCcEEEEeccchHHHHHHHHhcccc---CC-----------------
Confidence 9998751 0000 0000 01245678999999999999988876321 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
...+. +.|||+ +.|++.|++. .++.+.||+|+| .++
T Consensus 226 ------a~~~~--------------f~HND~------------------~~Le~~L~~~-----~~~~~~Vv~EgV-~Sm 261 (476)
T PLN02955 226 ------VEVFV--------------YRHCDM------------------YHLNSLLSSC-----KMKRKVVVTDSL-FSM 261 (476)
T ss_pred ------ceEEE--------------eCCCCH------------------HHHHHHHHhC-----CCCceEEEEeCC-CCC
Confidence 00000 137876 5677777642 345578999998 899
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCce----eecccccC--CCCCcceEEEec
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLAT 704 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PDi----vtlgK~Lg--gGy~PlsAvl~s 704 (817)
.|.++| +++|+++|++||++||+||+| |+|+.|+ .+..+++|+.||+ .||||++| ||| ++++
T Consensus 262 dGdiap----L~eL~~L~~~~ga~LiVDEAH-~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs 331 (476)
T PLN02955 262 DGDFAP----MEELSQLRKKYGFLLVIDDAH-GTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACS 331 (476)
T ss_pred CCCcCC----HHHHHHHHHHcCcEEEEcccc-cCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecH
Confidence 999988 999999999999999999999 5778888 6778899998886 59999999 786 8999
Q ss_pred hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee
Q 003472 705 NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (817)
Q Consensus 705 ~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~ 783 (817)
+++++.+....+ .+.+|.+..|..+++++++++++++ +..+++++++++++.+. ...+. .
T Consensus 332 ~~~~~~l~~~~~----~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---------~G~~~------~ 392 (476)
T PLN02955 332 KKWKQLIQSRGR----SFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---------SGVDI------S 392 (476)
T ss_pred HHHHHHHHHhCC----CCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------cCCCC------C
Confidence 999998875432 2344446778888899999999965 34556677766665431 12221 1
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-++.|.+.++ .....+.+.++++||+
T Consensus 393 sPI~pI~ig~~------~~a~~~~~~L~~~Gi~ 419 (476)
T PLN02955 393 SPIISLVVGNQ------EKALKASRYLLKSGFH 419 (476)
T ss_pred CCEEEEEeCCH------HHHHHHHHHHHHCCCE
Confidence 34556666554 5677788999999986
No 99
>PRK00784 cobyric acid synthase; Provisional
Probab=99.94 E-value=3.1e-26 Score=264.65 Aligned_cols=200 Identities=17% Similarity=0.083 Sum_probs=153.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC--------CCCcHHHHHHhCCCCccccCCCc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP--------HDSDSRFLFTKLPSLSLRRNFPS 108 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~--------~~~d~~~~~~~~~~~~~~~~~~~ 108 (817)
|++|||+||+|+||||+||++|+++|+ ++|++|++||||++... +.+|++++++.+.++
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~-------- 68 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGV-------- 68 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCC--------
Confidence 789999999999999999999999994 88999999999863211 123666665544222
Q ss_pred ccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHh-Hh
Q 003472 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (817)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (817)
.++ ..+||+.++ |.+|+.++. .+
T Consensus 69 ------------------------~~~-------------------------------~~i~P~~~~-~~sp~~a~~~~~ 92 (488)
T PRK00784 69 ------------------------EPS-------------------------------VDMNPVLLK-PQSDRGSQVIVQ 92 (488)
T ss_pred ------------------------Cch-------------------------------hccCCEEec-CCCCCcceEEEc
Confidence 111 237788775 788886652 11
Q ss_pred -------------cCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCC-CCCC-CCCchhhHhhhCCCC
Q 003472 188 -------------SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGP-SGSLQCDLYRPFRLP 252 (817)
Q Consensus 188 -------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~-~p~~-~~~~~~~la~~l~~p 252 (817)
.+..+..++|++.++++.++ +|++||||+||++ .|+. .+.+++|||+.+++|
T Consensus 93 g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~~~-------------~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~P 159 (488)
T PRK00784 93 GKPVGNMDARDYHDYKPRLLEAVLESLDRLAAE-------------YDVVVVEGAGSPAEINLRDRDIANMGFAEAADAP 159 (488)
T ss_pred CccccccCHHHHhhcchhhHHHHHHHHHHHHhc-------------CCEEEEECCCCccccCcccCCchhHHHHHHcCCC
Confidence 03456788899988876654 9999999999999 5654 357899999999999
Q ss_pred EEEEEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 003472 253 GILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (817)
Q Consensus 253 vilV~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~------~~~~l~~~~~~~~pvlg-iP~~~~~~~~~ 320 (817)
||||++.++| ++++++.+++.+..+ +.+|+|||+|++..+ +.++|++++ ++||+| ||+.+.+..+.
T Consensus 160 VILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~--gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 160 VILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELT--GVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCcCh
Confidence 9999999998 588888888888754 479999999998532 233355566 999999 99999887554
No 100
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.91 E-value=5.7e-24 Score=244.48 Aligned_cols=194 Identities=16% Similarity=0.071 Sum_probs=141.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC--------CCCcHHHHHHhCCCCccccCCCcccc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP--------HDSDSRFLFTKLPSLSLRRNFPSSLI 111 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~--------~~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (817)
|||+||+|+||||+||++||+.|+ ++|++|+||||+++... +.+++++++..++++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~----------- 64 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI----------- 64 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-----------
Confidence 699999999999999999999994 89999999999963211 112344444433221
Q ss_pred cccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeecc-------------cc
Q 003472 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEE-------------AV 178 (817)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 178 (817)
.|.+ .+||+.|+. |.
T Consensus 65 ---------------------~~~~-------------------------------~~nPv~lk~~~~~~s~~i~~g~~~ 92 (475)
T TIGR00313 65 ---------------------EPSV-------------------------------HMNPILLKPKGNFTSQVIVHGRAV 92 (475)
T ss_pred ---------------------Cchh-------------------------------ccCCEEeCcCCCCcCcEEEcCccc
Confidence 2222 255555554 34
Q ss_pred ChHHHHhHhc-CCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCC--CCCCCCchhhHhhhCCCCEEE
Q 003472 179 SPHLAAERES-GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGIL 255 (817)
Q Consensus 179 ~p~~a~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~--p~~~~~~~~~la~~l~~pvil 255 (817)
+|+.+.+... +..+..++|.+.+.++.++ +|++|||||||+++ +...+.+++++|+.+++||||
T Consensus 93 ~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~-------------~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVIL 159 (475)
T TIGR00313 93 GDMNYQEYYKNKVDFFLKAIKESLEILARE-------------YDYVVIEGAGSPAEINLLKRDLANMRIAELANADAIL 159 (475)
T ss_pred CcCCHHHHhhhhhHHHHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEE
Confidence 5555533321 3345678888888877654 99999999999987 244678999999999999999
Q ss_pred EEcCCCCh-HHHHHHHHHHHHhC-CCcEEEEEEccCCC------CCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 256 VGDGRLGG-ISGTISAYESLKLR-GYDVVAVVFEDHGL------VNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 256 V~~~~~g~-i~~~~~~~~~l~~~-~~~v~gvi~n~~~~------~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
|++.++|+ +++++.+++.+... +..++|||+|++.. ++.++|++++ ++|||| +|+.+.+
T Consensus 160 V~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~--gipvLG~ip~~~~l 227 (475)
T TIGR00313 160 VADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELT--GIPVLGVLPYDENL 227 (475)
T ss_pred EEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhh--CCCEEEEecCCCcC
Confidence 99999885 56777788887754 36899999999843 2344456666 999999 9998876
No 101
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.91 E-value=2.9e-23 Score=206.51 Aligned_cols=165 Identities=28% Similarity=0.397 Sum_probs=140.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCCcHHHHHHhCCCCccccCCCcccccccchhhh
Q 003472 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (817)
Q Consensus 41 ~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (817)
||+||++|+|||+++++|+++|. ++|+||++|||++++.. .+.|..++++.. +.
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~-~~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNIS-GT------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHc-CC-------------------
Confidence 79999999999999999999994 88999999999999864 245667666554 11
Q ss_pred hHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHHHH
Q 003472 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (817)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~~ 199 (817)
..++ ...+++.+..|.+|+.++..+ +.....+++.+
T Consensus 56 ------------~~~~-------------------------------~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------ALDW-------------------------------DEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CCch-------------------------------hccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 1111 124578888899999887776 66678888999
Q ss_pred HHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 003472 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (817)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (817)
.++++.++ +|++||||+||+.+|+....+++|+++.+++|||||++.+.++++++..+.+.++.++.
T Consensus 92 ~~~~l~~~-------------~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQK-------------YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhc-------------CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 88876644 99999999999999988778999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 003472 280 DVVAVVFE 287 (817)
Q Consensus 280 ~v~gvi~n 287 (817)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
No 102
>PRK07179 hypothetical protein; Provisional
Probab=99.90 E-value=2.2e-22 Score=228.06 Aligned_cols=303 Identities=10% Similarity=0.029 Sum_probs=199.9
Q ss_pred CeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc---C-CCCCCChHHHHHHH
Q 003472 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV---M-FPENVYEPALECAE 450 (817)
Q Consensus 375 ~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~---~-~~~~~~~~~~eLae 450 (817)
.+++..++.|. +++|-+|+ .|||+.. ||+|++|+.+|+++++.. + ......+...+|++
T Consensus 44 ~~~~~~~~~g~--~~~~~~~~----~YL~l~~-----------~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 44 KHLVLGKTPGP--DAIILQSN----DYLNLSG-----------HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred ceEEeecCCCC--cEEEeecC----CccCCCC-----------CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 45666666665 47777888 8888763 999999999999987422 1 11122367889999
Q ss_pred HHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCC
Q 003472 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (817)
Q Consensus 451 ~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~ 530 (817)
+|+++++. ++++|++||++||+.|++... . + .+.+..+.-.|-+...++...+..
T Consensus 107 ~la~~~g~---~~~~~~~sG~~An~~~l~~l~-----~---------------~--g~~v~~~~~~h~s~~~~~~~~g~~ 161 (407)
T PRK07179 107 KLAAFTGF---ESCLLCQSGWAANVGLLQTIA-----D---------------P--NTPVYIDFFAHMSLWEGVRAAGAQ 161 (407)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C---------------C--CCEEEEECCcCHHHHHHHHHCCCe
Confidence 99999883 678999999999999999771 0 1 123334555555443322221110
Q ss_pred CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhc
Q 003472 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (817)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~ 610 (817)
.+++ .++|. +.+++.+++
T Consensus 162 ------------------------------~~~~--------------~~~d~------------------~~l~~~l~~ 179 (407)
T PRK07179 162 ------------------------------AHPF--------------RHNDV------------------DHLRRQIER 179 (407)
T ss_pred ------------------------------EEEe--------------cCCCH------------------HHHHHHHHh
Confidence 0010 12332 456666652
Q ss_pred CCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec--cccccccchhhhcCCCC--ceee
Q 003472 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP--DIAC 686 (817)
Q Consensus 611 ~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG--fGRtG~~~a~e~~gv~P--Divt 686 (817)
.+.++|++|++ +++.|.+.| +++|+++|++||++||+||+|+. +|++|..+ .+++|+.+ |+++
T Consensus 180 -------~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~ 246 (407)
T PRK07179 180 -------HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFIT 246 (407)
T ss_pred -------cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEE
Confidence 23578999998 999999987 89999999999999999999973 34555543 45678754 8864
Q ss_pred --cccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 687 --YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 687 --lgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
++|++|+ ++|++++++++++.+.... .+..+++|+. |..++++.++++.+++. +...++.+.+++++.
T Consensus 247 ~S~sK~~g~---~~G~l~~~~~~~~~~~~~~--~~~~~~~t~~--~~~~aa~~aal~~~~~~---~~~~~~l~~~~~~l~ 316 (407)
T PRK07179 247 ASLAKAFAG---RAGIITCPRELAEYVPFVS--YPAIFSSTLL--PHEIAGLEATLEVIESA---DDRRARLHANARFLR 316 (407)
T ss_pred eechHhhhc---cCeEEEeCHHHHHHHHHhC--cCeeeCCCCC--HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 7999975 4789999999888774321 1223444444 66667778889988653 223344444555444
Q ss_pred HHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.|.+. .. .+++.|.++.+++... .....+...+.++||+
T Consensus 317 ~~L~~~--g~----~v~~~~~i~~l~~~~~------~~~~~~~~~L~~~GI~ 356 (407)
T PRK07179 317 EGLSEL--GY----NIRSESQIIALETGSE------RNTEVLRDALEERNVF 356 (407)
T ss_pred HHHHHc--CC----CCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCce
Confidence 444332 22 3557788999887432 2445677788899985
No 103
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.90 E-value=6.3e-23 Score=233.69 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=139.0
Q ss_pred cCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCcccc
Q 003472 25 TFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRR 104 (817)
Q Consensus 25 ~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~ 104 (817)
..+-..-...-+|+.|||+||+||+|||+||++|+++|+ ++ |.+||| | ++..|.
T Consensus 226 ~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---G-pD~id~-------------- 279 (476)
T PRK06278 226 ISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---G-PDVRDI-------------- 279 (476)
T ss_pred ccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---C-CChhhc--------------
Confidence 334455666777999999999999999999999999994 33 999995 3 322220
Q ss_pred CCCcccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHH
Q 003472 105 NFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAA 184 (817)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~ 184 (817)
+.+.+.|+.|++|+.++
T Consensus 280 ---------------------------------------------------------------~p~~~~~~~~~sp~~a~ 296 (476)
T PRK06278 280 ---------------------------------------------------------------VPSLYLLREKMTKYNSI 296 (476)
T ss_pred ---------------------------------------------------------------CCcceecccccCChHHH
Confidence 02257899999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCC---CchhhHhhhCCCCEEEEEcCCC
Q 003472 185 ERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLPGILVGDGRL 261 (817)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~---~~~~~la~~l~~pvilV~~~~~ 261 (817)
..+....+..++..+.++. ..+|++|||||||+++|...+ .+++|||+.+++|||||++.++
T Consensus 297 n~~~d~~~~~~~~~~~~~~---------------~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVILV~~~~~ 361 (476)
T PRK06278 297 KIGDRGWSDVEEFLEFVKN---------------SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSK 361 (476)
T ss_pred hhcCCcccCHHHHHHHHHh---------------cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEEEEcCCC
Confidence 9762223555555554321 138999999999999995433 5899999999999999999999
Q ss_pred ChHHHHHHHH----HHHHhCCCcEEEEEEccCCC-CCHHHHHHhhcC-CCcEEecCC
Q 003472 262 GGISGTISAY----ESLKLRGYDVVAVVFEDHGL-VNEVPLMSYLRN-RVPVLVLPP 312 (817)
Q Consensus 262 g~i~~~~~~~----~~l~~~~~~v~gvi~n~~~~-~~~~~l~~~~~~-~~pvlgiP~ 312 (817)
|++++++.++ ++++.++.+|.|||+|++.. ...+.+++.++. ++||||+|.
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999998854 56667789999999999943 333444444443 999999654
No 104
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.89 E-value=1.3e-22 Score=228.88 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=132.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
|+.|||+||+||+|||+||++|+++|+ ++|.+|.+||| | ++..|+.++.+.+ +.+
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---G-pd~iD~~~~~~~~-g~~--------------- 55 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---G-PDFIDPSHHEAVA-GRP--------------- 55 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---C-CCCCCHHHHHHHh-CCC---------------
Confidence 678999999999999999999999994 89999999996 4 5678888776654 431
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
+.|+..| .+ ..+.
T Consensus 56 ---------------------------------------------------~~nld~~-------~~---------~~~~ 68 (433)
T PRK13896 56 ---------------------------------------------------SRTLDPW-------LS---------GEDG 68 (433)
T ss_pred ---------------------------------------------------cccCChh-------hC---------CHHH
Confidence 1122122 11 1244
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHHHHHH
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~~~~l 274 (817)
|.+.+.+ ..+|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~---------------~~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR---------------GEGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh---------------hcCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 5554431 12899999999999976 33789999999999999999999995 67778887544
Q ss_pred Hh---CCCcEEEEEEccCCC-CCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 003472 275 KL---RGYDVVAVVFEDHGL-VNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 275 ~~---~~~~v~gvi~n~~~~-~~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (817)
.. ++++|.|||+|++.. .+.+.+++.+++++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 579999999999954 345666766655799999 9999887654
No 105
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.89 E-value=1.3e-22 Score=222.39 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=141.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchh
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (817)
+.|+|+||+||+||||||+||+++|+ ++|++|.+|| -+|+++|+.+..... |.
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK----vGPDYIDP~~H~~at-G~----------------- 53 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK----VGPDYIDPGYHTAAT-GR----------------- 53 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc----cCCCccCchhhhHhh-CC-----------------
Confidence 47999999999999999999999994 9999999999 357889988777664 44
Q ss_pred hhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHH
Q 003472 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (817)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i 197 (817)
.|.|++.| .+..+.|
T Consensus 54 -------------------------------------------------~srNLD~~----------------mm~~~~v 68 (451)
T COG1797 54 -------------------------------------------------PSRNLDSW----------------MMGEEGV 68 (451)
T ss_pred -------------------------------------------------ccCCCchh----------------hcCHHHH
Confidence 45667777 2456888
Q ss_pred HHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC---CCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHHHH
Q 003472 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYE 272 (817)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~~~ 272 (817)
++.+.+..++ .|+.||||++|++++.. ...+.++|||.|++|||||+|++..+ +.+++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 8888887765 89999999999999833 34799999999999999999988544 445555555
Q ss_pred HHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 003472 273 SLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~-~~~~~~~l~~~~~~--~~pvlg-iP~~~~~~~~ 319 (817)
.+. .++++.|||+|++ .+.+.+.+++.++. ++|||| ||..+++.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 554 3488999999999 45666666665553 799999 9999988865
No 106
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.89 E-value=2.7e-21 Score=216.32 Aligned_cols=312 Identities=14% Similarity=0.085 Sum_probs=209.6
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (817)
..++++++|.+ +++ +|+ +|||+.++ .++||..+|+|++|+++++.+++... ...+..+...+++++
T Consensus 23 ~~~~~~~~g~~--~~~-~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (385)
T PRK05958 23 LRPREGGAGRW--LVV-DGR----RMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEE 92 (385)
T ss_pred ccccccCCCce--eEe-CCc----eEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHH
Confidence 34778888875 776 999 99999985 46898328999999999998865321 112346778899999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
++++++. +.++++++|++++..+++.. + ++.+.|.+...+|+.+..++.+.+...
T Consensus 93 la~~~~~---~~~i~~~~g~~~~~~~l~~~----~------------------~~gd~V~~~~~~~~~~~~~~~~~g~~~ 147 (385)
T PRK05958 93 LAEWFGA---ERALLFSSGYAANLAVLTAL----A------------------GKGDLIVSDKLNHASLIDGARLSRARV 147 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHh----C------------------CCCCEEEEeCccCHHHHHHHHhcCCce
Confidence 9998873 57888899999999887654 1 123456677788987776655543210
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
..+ | .+|. +.+++.++.
T Consensus 148 ----------------------------~~~--~--------------~~d~------------------~~l~~~i~~- 164 (385)
T PRK05958 148 ----------------------------RRY--P--------------HNDV------------------DALEALLAK- 164 (385)
T ss_pred ----------------------------EEe--C--------------CCCH------------------HHHHHHHHh-
Confidence 001 1 1121 345666652
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcC--CCCc---e
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---I 684 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~g--v~PD---i 684 (817)
...+.++++++++ +...|...+ +++|.++|++||+++|+||+|+ | +|++|..+ ...++ ..+| +
T Consensus 165 ----~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~i~~ 234 (385)
T PRK05958 165 ----WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDVILV 234 (385)
T ss_pred ----ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCceEEE
Confidence 1234788999997 888887665 9999999999999999999994 3 45555543 22333 3567 5
Q ss_pred eecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 685 ACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 685 vtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
.+++|++|. +.|++++++++++.+..... .+.++++.+|++++++.++|+.+++. +++.++....++++.
T Consensus 235 ~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~l~ 304 (385)
T PRK05958 235 GTLGKALGS---SGAAVLGSETLIDYLINRAR----PFIFTTALPPAQAAAARAALRILRRE---PERRERLAALIARLR 304 (385)
T ss_pred Eechhhccc---CCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 589999974 23668889888887643211 23456678999999999999998663 233344444444444
Q ss_pred HHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+ .+ +.-+...|.++.+.+.+. .....+.+.++++||.
T Consensus 305 ~~L~~----~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~ 345 (385)
T PRK05958 305 AGLRA----LG-FQLMDSQSAIQPLIVGDN------ERALALAAALQEQGFW 345 (385)
T ss_pred HHHHH----cC-CCcCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCce
Confidence 33332 22 111345677888877432 2445688888888874
No 107
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.88 E-value=6.2e-22 Score=227.02 Aligned_cols=178 Identities=19% Similarity=0.267 Sum_probs=133.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (817)
+|+.|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++.... +.+
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---G-pd~~d~~~~~~~~-g~~-------------- 57 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---G-PDYIDPAYHTAAT-GRP-------------- 57 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---C-CCcccHHHHHHHh-CCC--------------
Confidence 4789999999999999999999999994 88999999998 3 4556766665443 320
Q ss_pred hhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChH
Q 003472 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (817)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (817)
+.+...| ....+
T Consensus 58 ----------------------------------------------------~~~ld~~----------------~~~~~ 69 (451)
T PRK01077 58 ----------------------------------------------------SRNLDSW----------------MMGEE 69 (451)
T ss_pred ----------------------------------------------------cccCCce----------------eCCHH
Confidence 0111111 12356
Q ss_pred HHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCC---CCCCchhhHhhhCCCCEEEEEcCCCCh--HHHHHHH
Q 003472 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISA 270 (817)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~---~~~~~~~~la~~l~~pvilV~~~~~g~--i~~~~~~ 270 (817)
.|.+.+.++.++ +|++||||+||++++. ....+++|+|+.+++|||||++.+..+ +++++.+
T Consensus 70 ~v~~~~~~~~~~-------------~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQG-------------ADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhccc-------------CCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 788888776544 9999999999999863 346789999999999999999988643 5566666
Q ss_pred HHHHHhCCCcEEEEEEccCCCC-CHHHHHHhhcC-CCcEEe-cCCCCCCCcc
Q 003472 271 YESLKLRGYDVVAVVFEDHGLV-NEVPLMSYLRN-RVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 271 ~~~l~~~~~~v~gvi~n~~~~~-~~~~l~~~~~~-~~pvlg-iP~~~~~~~~ 319 (817)
+..+ .++++++|||+|++..+ ..+.+.+.++. ++||+| ||+.+.+..+
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~p 187 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALALP 187 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCCC
Confidence 6666 34789999999999432 33344444433 899999 9999987644
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.88 E-value=4.7e-22 Score=227.61 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=130.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccchhh
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (817)
+|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.+
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g-~d~~D~~~~~~~~-g~~----------------- 53 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---G-PDYIDPMFHTQAT-GRP----------------- 53 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---C-CCCCCHHHHHHHh-CCc-----------------
Confidence 4899999999999999999999994 88999999998 3 4456767655543 320
Q ss_pred hhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHHHH
Q 003472 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (817)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~ 198 (817)
+.++..| .++.+.|.
T Consensus 54 -------------------------------------------------~~~ld~~----------------~~~~~~i~ 68 (449)
T TIGR00379 54 -------------------------------------------------SRNLDSF----------------FMSEAQIQ 68 (449)
T ss_pred -------------------------------------------------hhhCCcc----------------cCCHHHHH
Confidence 0111111 13467888
Q ss_pred HHHHHHHhccCcccccccccCCCCEEEEeCCCCCC---CCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHH--
Q 003472 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES-- 273 (817)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~---~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~-- 273 (817)
+.+.++.++ +|++||||+||++ +|+....+++|||+.+++|||||++.+ ++++++.++..
T Consensus 69 ~~~~~~~~~-------------~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKG-------------TDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhccc-------------CCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 888877654 8999999999999 566667899999999999999999987 56666666431
Q ss_pred -HHhCCCcEEEEEEccCCCC-----CHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 003472 274 -LKLRGYDVVAVVFEDHGLV-----NEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (817)
Q Consensus 274 -l~~~~~~v~gvi~n~~~~~-----~~~~l~~~~~~~~pvlg-iP~~~~~~~~ 319 (817)
...++.+++|||+|++..+ +.+.+++++ ++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~--gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLR--GIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhC--CCCEEEEecCccccCCC
Confidence 1245889999999999432 233455555 999999 9999887644
No 109
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.87 E-value=5.4e-21 Score=217.00 Aligned_cols=297 Identities=12% Similarity=0.041 Sum_probs=197.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
++++|.| |+++|.+.||+|++|+.++++++++.. .....++.+.+|+++|+++.|. +.+++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 8999998 999999779999999999999986532 1112345788999999999983 67899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++...+. . + .++|..+..+|+++..++..+|....
T Consensus 121 ~~i~~l~~~---~---------------~--g~~vi~~~~~h~s~~~~~~~~g~~~~----------------------- 157 (410)
T PRK13392 121 AALSTLGKL---L---------------P--GCVILSDALNHASMIEGIRRSGAEKQ----------------------- 157 (410)
T ss_pred HHHHHHhcC---C---------------C--CCEEEEehhhhHHHHHHHHHcCCeEE-----------------------
Confidence 999955111 0 1 24667778899988766555442210
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+ .++|. +.+++.+++ ...++..+|++|++ .+..|.
T Consensus 158 -----~~----------------~~~d~------------------~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 158 -----VF----------------RHNDL------------------ADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred -----EE----------------eCCCH------------------HHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 00 01221 223444443 12346779999998 899998
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--ecccccCCCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tlgK~LggGy~PlsAvl~s~~i~d 709 (817)
+.+ +++|+++|++||+++|+||+|+ |+ |+.|.++ .++.++ .+|++ +++|++|. +-|.+++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 887 9999999999999999999998 54 6777654 466665 57887 99999874 1134678899988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC-chhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ-TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCA 788 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~-l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~g 788 (817)
.+..... .+.+|.+.+|++++++.++|+.++..+ ..+++.+ ..+++.+.+.+. ..+.+ .+.+-++.
T Consensus 266 ~l~~~~~----~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~----~~~~l~~~L~~~--g~~~~---~~~~~~~~ 332 (410)
T PRK13392 266 FVRSFAP----GFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQD----RVAALKAKLNAN--GIPVM---PSPSHIVP 332 (410)
T ss_pred HHHHhCc----chhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHHHc--CCCCC---CCCCCEEE
Confidence 7653211 123567788999999999999886532 1222333 333333333221 22221 23454555
Q ss_pred EEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 789 IELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 789 Iel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+... .....+...++ ++||+
T Consensus 333 i~~~~~------~~~~~~~~~L~~~~GI~ 355 (410)
T PRK13392 333 VMVGDP------TLCKAISDRLMSEHGIY 355 (410)
T ss_pred EEeCCH------HHHHHHHHHHHHhCCEE
Confidence 554321 23456777776 56875
No 110
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.87 E-value=2.3e-20 Score=209.45 Aligned_cols=313 Identities=11% Similarity=0.055 Sum_probs=204.7
Q ss_pred eEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHH
Q 003472 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (817)
Q Consensus 376 p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~ 451 (817)
|.++.+++|.+ ++ .+|+ +||||.+ +.++||..+|.+.+++.+++.++.... ...+..+...+++++
T Consensus 17 ~~~~~~~~g~~--~~-~~g~----~~id~~~---~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 86 (385)
T TIGR01825 17 IRVLESAQGPR--VR-VNGK----EVINLSS---NNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEK 86 (385)
T ss_pred ccccccCCCce--EE-ECCc----eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHH
Confidence 56788888875 77 8999 9999987 466899339999999999998764321 223457788999999
Q ss_pred HHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCC
Q 003472 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (817)
Q Consensus 452 L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~ 531 (817)
+++..+. +..++++||++|++.|++... ++.+.|..+..+|++...++.+.+...
T Consensus 87 l~~~~g~---~~~i~~~sG~~a~~~a~~~~~----------------------~~gd~vi~~~~~~~~~~~~~~~~g~~~ 141 (385)
T TIGR01825 87 LAKFKKT---EAALVFQSGFNTNQGVLSALL----------------------RKGDIVLSDELNHASIIDGLRLTKATK 141 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHhC----------------------CCCCEEEEEccccHHHHHHHHhcCCce
Confidence 9998873 467888999999999888761 112456677788887765554433210
Q ss_pred CCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC
Q 003472 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (817)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~ 611 (817)
. .+ + +.|. +.+++.+.+
T Consensus 142 ~----------------------------~~--~--------------~~d~------------------~~l~~~l~~- 158 (385)
T TIGR01825 142 K----------------------------IY--K--------------HADM------------------DDLDRVLRE- 158 (385)
T ss_pred E----------------------------Ee--C--------------CCCH------------------HHHHHHHHh-
Confidence 0 00 0 1111 234455543
Q ss_pred CCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCCCCce----e
Q 003472 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVPDI----A 685 (817)
Q Consensus 612 ~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv~PDi----v 685 (817)
....+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ | ++++|. +...++++.||. .
T Consensus 159 ---~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 229 (385)
T TIGR01825 159 ---NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVG 229 (385)
T ss_pred ---hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEE
Confidence 11245789999997 888888776 8999999999999999999995 3 455554 345566776663 5
Q ss_pred ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 686 CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 686 tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+++|++|+ +.|.+++++++++.+..... . +..+...+|+.++++.++|+.+++. .++.++....++++.+
T Consensus 230 s~sK~~~~---~gG~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~ 299 (385)
T TIGR01825 230 TLSKAIGV---VGGYAAGHKELIEYLKNRAR--P--FLFSTAQPPAVVAALAAAVDELQRS---PELMERLWDNTRFFKA 299 (385)
T ss_pred eccHHhhc---CCCEEecCHHHHHHHHHhCc--c--ccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 99999963 23557888888888753211 1 1223346889999999999987542 1233333444454444
Q ss_pred HHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 766 ELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 766 ~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+. ..+.+. ..+.++++.+... .....+...++++||+
T Consensus 300 ~L~~~--g~~~~~---~~~~~~~~~~~~~------~~~~~~~~~L~~~gi~ 339 (385)
T TIGR01825 300 GLGKL--GYDTGG---SETPITPVVIGDE------KAAQEFSRRLFDEGIF 339 (385)
T ss_pred HHHHc--CCCCCC---CCCCEEEEEECCH------HHHHHHHHHHHHCCcE
Confidence 44332 222221 1233555554321 2345688888898874
No 111
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.86 E-value=1.9e-20 Score=209.90 Aligned_cols=291 Identities=14% Similarity=0.044 Sum_probs=193.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-------ccCCCC----CCChHHHHHHHHHHhhcCCCCcceEEEeC
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVMFPE----NVYEPALECAELLLQGVGKGWASRAYFSD 468 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-------~~~~~~----~~~~~~~eLae~L~~~~~~~~~~~v~f~~ 468 (817)
+++||.| |+|||++.||++.+++.+++.++. .....+ ..++...+++++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 7899999 999999989999999999998872 222112 2568899999999999984 5789999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCcccc
Q 003472 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (817)
Q Consensus 469 SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (817)
||+.||.+.+.. +. ++.++|..+..+|+++..++..... ..
T Consensus 79 sG~~a~~~~~~~----~~------------------~~~d~ii~d~~~H~sv~~~~~~~~~--~~--------------- 119 (370)
T PRK05937 79 SGYMANLGLCAH----LS------------------SVTDYVLWDEQVHISVVYSLSVISG--WH--------------- 119 (370)
T ss_pred ChHHHHHHHHHH----hC------------------CCCCEEEEEhhhhHHHHHHHHHcCC--ce---------------
Confidence 999999643222 11 2347999999999999887665311 00
Q ss_pred CCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 003472 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (817)
Q Consensus 549 ~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV 628 (817)
+.+ .++|+ +.+++.|+... ....+..+|++|++
T Consensus 120 -------------~~~--------------~~~d~------------------~~l~~~l~~~~--~~~~~~~~v~v~~v 152 (370)
T PRK05937 120 -------------QSF--------------RHNDL------------------DHLESLLESCR--QRSFGRIFIFVCSV 152 (370)
T ss_pred -------------EEe--------------cCCCH------------------HHHHHHHHhhh--ccCCCcEEEEEecC
Confidence 001 13443 45666665321 11123456889998
Q ss_pred cccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcC---CCCceeecccccCC-CCCcceEEE
Q 003472 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG---CVPDIACYGKLLTG-GVIPLAATL 702 (817)
Q Consensus 629 ~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~g---v~PDivtlgK~Lgg-Gy~PlsAvl 702 (817)
+++.|.+.| +++|+++|+++|++||+||+|+ | +|++|.++.. .++ +.+|+.|++|++|. | ++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~-~~~~~~~~~~~~tlsK~~g~~G----~~vl 222 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCH-SLGYENFYAVLVTYSKALGSMG----AALL 222 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHH-hhCCCCCcEEEEechhhhhcCc----eEEE
Confidence 999999998 9999999999999999999997 4 6677754332 233 23678899999975 4 4567
Q ss_pred echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEe
Q 003472 703 ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA 782 (817)
Q Consensus 703 ~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG 782 (817)
+.+++.+.+..... .+.++.+.+|.+++++.++++++++.+ +...++.+.+.++|.+. +... +
T Consensus 223 ~~~~~~~~~~~~~~----~~~~s~~~~~~~~~a~~aal~~l~~~~--~~~~~~l~~l~~~l~~~----l~~~-------~ 285 (370)
T PRK05937 223 SSSEVKQDLMLNSP----PLRYSTGLPPHLLISIQVAYDFLSQEG--ELARKQLFRLKEYFAQK----FSSA-------A 285 (370)
T ss_pred cCHHHHHHHHHhCC----CCeecCCCCHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHh----cCCC-------C
Confidence 77776665542111 234556689999999999999997632 23344444454444332 2211 1
Q ss_pred eeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 783 LGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 783 ~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.|....|.+... ....+...+.++||+
T Consensus 286 ~~~~~~i~~~~~-------~~~~~~~~L~~~gi~ 312 (370)
T PRK05937 286 PGCVQPIFLPGI-------SEQELYSKLVETGIR 312 (370)
T ss_pred CCCEEEEEeCCh-------hHHHHHHHHHHCCee
Confidence 122333444321 235666777788874
No 112
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.86 E-value=2.5e-22 Score=224.09 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=153.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC--------CCcHHHHHHhCCCCccccCCCc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH--------DSDSRFLFTKLPSLSLRRNFPS 108 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~--------~~d~~~~~~~~~~~~~~~~~~~ 108 (817)
|+.+||.||.+++|||++++||||.|. ++|++|++|||.++..+. ..-++++++.++++
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i-------- 67 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGI-------- 67 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCC--------
Confidence 568999999999999999999999994 999999999998775432 23445555554443
Q ss_pred ccccccchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHh-Hh
Q 003472 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (817)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (817)
.+...++|+.++|. .... ...+....+..-..+.. +.
T Consensus 68 ---------------------~p~v~mNPvLLKP~------sd~~---------------sQVIv~G~~~G~~s~~~yy~ 105 (486)
T COG1492 68 ---------------------EPSVHMNPVLLKPC------SDTG---------------SQVIVMGKDIGRKSAVEYYQ 105 (486)
T ss_pred ---------------------CCccccCCEEEeec------CCCc---------------eEEEEecccccccChHHHHH
Confidence 55566667666666 1111 12333444433333333 22
Q ss_pred cCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCC--CCCCCchhhHhhhCCCCEEEEEcCCCChHH
Q 003472 188 SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLPGILVGDGRLGGIS 265 (817)
Q Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~~la~~l~~pvilV~~~~~g~i~ 265 (817)
.+....+..+.+.++++.++ +|+|++||||+.+.. ...+..|+.+|+..++|||||+|+++|+.+
T Consensus 106 ~~~~~l~~~v~~s~~~l~~~-------------~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvf 172 (486)
T COG1492 106 EGKGLLWVAVKESLERLDRE-------------YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVF 172 (486)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------------ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeeccccee
Confidence 13334566777777766655 999999999976654 336799999999999999999999998877
Q ss_pred HHHH-HHHHHHhC-CCcEEEEEEccC------CCCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 266 GTIS-AYESLKLR-GYDVVAVVFEDH------GLVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 266 ~~~~-~~~~l~~~-~~~v~gvi~n~~------~~~~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
+.+. |+++|... .-+|+|+|+|++ .....++|++.+ ++|||| +||++..-
T Consensus 173 Asl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~t--g~~vlGv~P~~~~~~ 231 (486)
T COG1492 173 ASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELT--GVPVLGVLPYLKDAL 231 (486)
T ss_pred eeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhh--CCeeEeecccccccc
Confidence 7776 77777543 347999999998 345688899988 999999 99998754
No 113
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.84 E-value=2.7e-20 Score=179.19 Aligned_cols=89 Identities=26% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------CH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NE 294 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------~~ 294 (817)
+|++|||||||+++|+..+.+++|+++.+++|+|+|++.++|+++|++.+++.++.+|..+.|||.|+.... +.
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~ 118 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNV 118 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhH
Confidence 367999999999999999999999999999999999999999999999999999999999999999997322 25
Q ss_pred HHHHHhhcCCCcEEe-cC
Q 003472 295 VPLMSYLRNRVPVLV-LP 311 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP 311 (817)
+.+++.+ ++|++| +|
T Consensus 119 ~~i~~~~--gip~LG~IP 134 (134)
T cd03109 119 ETIERLT--GIPVLGIVP 134 (134)
T ss_pred HHHHHhc--CCCEEEeCC
Confidence 5666666 999999 77
No 114
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.84 E-value=8.5e-20 Score=188.83 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=215.8
Q ss_pred EEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHH
Q 003472 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (817)
Q Consensus 377 ~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L 452 (817)
.|+.+.+|..+.+.-.++ .+|.|++ |++||.++||+|++|-++++++|+... |.+++.+.+..|+.+|
T Consensus 50 rVi~s~q~p~i~v~G~~k-----~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGSDK-----KILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEEEecccc-----ceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 478888888655433332 6899998 999999889999999999999987543 5667889999999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
+.+.+. ++.+.++|+.+||.+++-..+ + ..+-|.-+.-.|.+.++++.+.. .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail---~-------------------pedAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL---T-------------------PEDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc---C-------------------hhhhhhccccccchhhhhhHHHh--hh
Confidence 999874 789999999999999988772 1 12456778899999998888863 22
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+.. |. ..+|..+.+
T Consensus 175 ~h~----------------------------------------------dv------------------~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV----------------------------------------------DV------------------FDLEHCLIS-- 188 (417)
T ss_pred ccc----------------------------------------------hh------------------HHHHHHHHH--
Confidence 210 00 112222222
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee-ecc-ccccccchhhhcCC--CCcee--e
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~-TGf-GRtG~~~a~e~~gv--~PDiv--t 686 (817)
....+...|+.|.+ .+|.|.+.| +++|.+|+++||+||.+||.| ||| |-|| .+..|.+|+ ++||+ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tG-rGt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETG-RGTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCC-CChHHHhCCCCcceehhhh
Confidence 12457789999998 899999999 999999999999999999999 454 4444 456688897 67877 9
Q ss_pred cccccCC---CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc-CcCchhcHHHHHHHHHHH
Q 003472 687 YGKLLTG---GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK-DPQTNHNIIPERRILREL 762 (817)
Q Consensus 687 lgK~Lgg---Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~-~~~l~~~l~~~~~~lg~~ 762 (817)
+||++|| || +.+++++.+.+...+ ++++++++. .|.....+.++++.+- ......+...+.+++.+.
T Consensus 261 LgKAlGga~GGy-----ttgp~~li~llrqr~--RpylFSnsl--ppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~ 331 (417)
T KOG1359|consen 261 LGKALGGASGGY-----TTGPKPLISLLRQRS--RPYLFSNSL--PPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF 331 (417)
T ss_pred hhhhhcCCCCCC-----ccCChhHHHHHHhcC--CceeecCCC--ChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999994 76 899999999987654 456655544 4555555566777763 333344444445555443
Q ss_pred HHHHHHHHH-HcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 763 WDLELIQQI-SSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 763 l~~~l~~~l-~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+........ +.||++- +-+.++ +....+.+.+|.+|+|
T Consensus 332 me~aGftIsg~~hPI~p----------v~lGda------~lA~~~ad~lLk~Gi~ 370 (417)
T KOG1359|consen 332 MEAAGFTISGASHPICP----------VMLGDA------RLASKMADELLKRGIY 370 (417)
T ss_pred HHhcCceecCCCCCccc----------eecccH------HHHHHHHHHHHhcCce
Confidence 322222222 2455432 222233 5667778888888876
No 115
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.84 E-value=2.4e-20 Score=223.59 Aligned_cols=184 Identities=16% Similarity=0.109 Sum_probs=139.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
|++|||+||+|++|||+||+||+++|+ ++|++|+|||||+++.- .. .......
T Consensus 2 ~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~--~~-~~~~~~~------------------- 54 (684)
T PRK05632 2 SRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL--TM-SEVEALL------------------- 54 (684)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC--CH-HHHHHHH-------------------
Confidence 679999999999999999999999994 89999999999998621 10 1111000
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
.. . +.....++
T Consensus 55 ------------------------------------------------------------------~~--~-~~~~~~~~ 65 (684)
T PRK05632 55 ------------------------------------------------------------------AS--G-QLDELLEE 65 (684)
T ss_pred ------------------------------------------------------------------hc--c-CChHHHHH
Confidence 00 0 11234577
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh----HHHHHHHHH
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAYE 272 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~----i~~~~~~~~ 272 (817)
|.+.|.++.++ +|++||||+++.........+|+|+|+.+++|||||++.+.++ ++++..+.+
T Consensus 66 I~~~~~~l~~~-------------~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~~ 132 (684)
T PRK05632 66 IVARYHALAKD-------------CDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAAS 132 (684)
T ss_pred HHHHHHHhccC-------------CCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHHH
Confidence 88888776544 9999999998777655556789999999999999999999887 567778888
Q ss_pred HHH-hCCCcEEEEEEcc--CCCCCHHHHHHhh------------------cC-CCcEEe-cCCCCCCCcchhhhhhccch
Q 003472 273 SLK-LRGYDVVAVVFED--HGLVNEVPLMSYL------------------RN-RVPVLV-LPPLPQDSSNDLMEWFDESH 329 (817)
Q Consensus 273 ~l~-~~~~~v~gvi~n~--~~~~~~~~l~~~~------------------~~-~~pvlg-iP~~~~~~~~~~~~~l~~~~ 329 (817)
.+. .++.+++|||+|+ +..+....+.+.+ .. ++|++| ||+.+.+.++++.+..+.+.
T Consensus 133 ~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~i~~~L~ 212 (684)
T PRK05632 133 SFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVIDIAKHLG 212 (684)
T ss_pred HhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHHHHHHcC
Confidence 887 7789999999999 4333333332222 12 899999 99999999998877666654
No 116
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.82 E-value=1.9e-18 Score=194.25 Aligned_cols=315 Identities=16% Similarity=0.109 Sum_probs=199.0
Q ss_pred EEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHH
Q 003472 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (817)
Q Consensus 378 vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~ 453 (817)
.+++++|. ++||.+|+ .||||+++ .++||..+|++.++++++++++.+.. +..+..+...++++.|+
T Consensus 27 ~~~~~~~~--~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la 97 (397)
T PRK06939 27 VITSPQGA--DITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLA 97 (397)
T ss_pred cccCCCCc--eEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHH
Confidence 45567775 58999999 99999884 56899559999999999998765421 12245677889999999
Q ss_pred hhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCC
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~ 533 (817)
++.+. +..+++++|++|+..+++... + . ...||. +..+|.+...++.+.+...
T Consensus 98 ~~~g~---~~~i~~tsG~~a~~~~~~~l~----~-~----------------gd~vi~-~~~~~~~~~~~~~~~~~~~-- 150 (397)
T PRK06939 98 KFLGT---EDAILYSSCFDANGGLFETLL----G-K----------------EDAIIS-DALNHASIIDGVRLCKAKR-- 150 (397)
T ss_pred HHhCC---CcEEEEcChHHHHHHHHHHhC----C-C----------------CCEEEE-EhhhhHHHHHHHHhcCCce--
Confidence 98873 467788889999999887651 1 1 124444 4455544333333322110
Q ss_pred CcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCC
Q 003472 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (817)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~ 613 (817)
+..| ++|. +.+++.+++..
T Consensus 151 ----------------------------~~~~--------------~~d~------------------~~l~~~i~~~~- 169 (397)
T PRK06939 151 ----------------------------YRYA--------------NNDM------------------ADLEAQLKEAK- 169 (397)
T ss_pred ----------------------------EEeC--------------CCCH------------------HHHHHHHHhhh-
Confidence 0001 1221 33444444210
Q ss_pred CCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--ec
Q 003472 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (817)
Q Consensus 614 ~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--tl 687 (817)
....++.+|+++++ ++..|...+ +++|.++|++||+++|+||++. |+ ++.|.. ....+++ .+|++ ++
T Consensus 170 -~~~~~~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~ 242 (397)
T PRK06939 170 -EAGARHKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTL 242 (397)
T ss_pred -ccCCCCeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEEC
Confidence 11236789999997 888887554 9999999999999999999994 53 444442 3455566 46787 89
Q ss_pred ccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 688 gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+|+++|+ ++|.+++++++++.+.... .. +..+.+.+|..++++.++++.+++. +++.++.+..++++.+.+
T Consensus 243 sK~~~g~--r~G~v~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L 313 (397)
T PRK06939 243 GKALGGA--SGGYTAGRKEVIDWLRQRS--RP--YLFSNSLAPAIVAASIKVLELLEES---DELRDRLWENARYFREGM 313 (397)
T ss_pred HHHhCcc--CceEEEeCHHHHHHHHHhC--cc--ccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH
Confidence 9999654 6788999999998875321 11 1123335677788899999988642 233444444444444433
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+ ... .-+.+.|.++.+.+... .....|...++++||.
T Consensus 314 ~~----~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~gI~ 351 (397)
T PRK06939 314 TA----AGF-TLGPGEHPIIPVMLGDA------KLAQEFADRLLEEGVY 351 (397)
T ss_pred HH----cCC-CcCCCCCCEEEEEECCH------HHHHHHHHHHHHCCce
Confidence 22 221 11224566665544321 2346788888898874
No 117
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.82 E-value=2.6e-18 Score=193.41 Aligned_cols=316 Identities=14% Similarity=0.105 Sum_probs=200.7
Q ss_pred EEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhcccc-C---CCCCCChHHHHHHHHH
Q 003472 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-M---FPENVYEPALECAELL 452 (817)
Q Consensus 377 ~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~-~---~~~~~~~~~~eLae~L 452 (817)
.++.++.|.. +++.+|+ +||||++ +.+||++.+|++++++.+++.+++.. . +..+..+...+|.+.|
T Consensus 22 ~~~~~~~~~~--~~~~~g~----~~i~~~~---~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~i 92 (393)
T TIGR01822 22 RIITSPQGAD--IRVADGR----EVLNFCA---NNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKI 92 (393)
T ss_pred cccccCCCce--EEecCCc----eEEEeeC---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHH
Confidence 3556666764 7778999 9999999 47899998999999999999886432 1 1113366778999999
Q ss_pred HhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCC
Q 003472 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (817)
Q Consensus 453 ~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~ 532 (817)
+++++. +.++.++||++|+..++.... + +.+.|..+.-+|.+...++.+.+...
T Consensus 93 a~~~g~---~~~ii~~~~~~a~~~~~~~l~----~------------------~gd~vi~~~~~~~s~~~~~~~~~~~~- 146 (393)
T TIGR01822 93 AAFLGT---EDTILYASCFDANGGLFETLL----G------------------AEDAIISDALNHASIIDGVRLCKAKR- 146 (393)
T ss_pred HHHhCC---CcEEEECchHHHHHHHHHHhC----C------------------CCCEEEEeccccHHHHHHHHhcCCce-
Confidence 999984 567777999999997765541 1 12344445566665444333322110
Q ss_pred CCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCC
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~ 612 (817)
+. +.++|. +.+++.+.+..
T Consensus 147 -----------------------------~~--------------~~~~d~------------------~~l~~~i~~~~ 165 (393)
T TIGR01822 147 -----------------------------YR--------------YANNDM------------------ADLEAQLKEAR 165 (393)
T ss_pred -----------------------------EE--------------eCCCCH------------------HHHHHHHHhhh
Confidence 00 002332 34555554310
Q ss_pred CCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-cc-ccccccchhhhcCC--CCcee--e
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--C 686 (817)
Q Consensus 613 ~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-Gf-GRtG~~~a~e~~gv--~PDiv--t 686 (817)
....+...|+++++ +...|.+.+ +++|.++|++||++||+||+|. |+ |..|.. ..+..++ .+|++ +
T Consensus 166 --~~~~~~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s 237 (393)
T TIGR01822 166 --AAGARHRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGT 237 (393)
T ss_pred --hcCCCceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEE
Confidence 11236778999998 788888876 8999999999999999999993 33 333332 3445555 46777 7
Q ss_pred cccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 687 YGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 687 lgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
++|.++|. .+|.+++++++++.+.... .. +..+.+.+|..+++++++|+.+++ .+++.++.+...+++.+.
T Consensus 238 ~sK~l~g~--r~G~~~~~~~~~~~l~~~~--~~--~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~ 308 (393)
T TIGR01822 238 LGKALGGA--SGGFTTARKEVVELLRQRS--RP--YLFSNSLPPAVVGASIKVLEMLEA---SNELRDRLWANTRYFRER 308 (393)
T ss_pred ChHHhhCC--CcEEEEeCHHHHHHHHHhC--cc--ceecCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 89999853 6788999999998875321 11 112223467778888999988754 123344444444444444
Q ss_pred HHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 767 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 767 l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+. ..... ...+.+..+.+.+. .....+...++++||+
T Consensus 309 L~~~--g~~~~---~~~~~~~~i~~~~~------~~~~~l~~~L~~~gI~ 347 (393)
T TIGR01822 309 MEAA--GFDIK---PADHPIIPVMLYDA------VLAQRFARRLLEEGIY 347 (393)
T ss_pred HHHc--CCCCC---CCCCCEEEEEeCCH------HHHHHHHHHHHHCCee
Confidence 3321 22211 12344566655432 2346688888888874
No 118
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.82 E-value=2.9e-18 Score=189.75 Aligned_cols=310 Identities=12% Similarity=0.036 Sum_probs=199.3
Q ss_pred EEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC----CCCCChHHHHHHHHHHh
Q 003472 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQ 454 (817)
Q Consensus 379 i~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~----~~~~~~~~~eLae~L~~ 454 (817)
++++.|.+ ++ .+|+ +||||.++ .++||..+|+|++|+.+++.+++.... ....++...++.+.|++
T Consensus 3 ~~~~~~~~--~~-~~g~----~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 72 (360)
T TIGR00858 3 LDRGPGPE--VV-RDGR----RLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAE 72 (360)
T ss_pred cccCCCCe--EE-ECCc----eEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence 34666765 44 6899 99999996 579963399999999999988654211 11235678889999999
Q ss_pred hcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCC
Q 003472 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (817)
Q Consensus 455 ~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~ 534 (817)
+.+. +..+++++|++++..+++.+ .. +.+.|.....+|+....++...+...
T Consensus 73 ~~~~---~~~i~~~~G~~~~~~~l~~~----~~------------------~gd~v~~~~~~~~~~~~~~~~~g~~~--- 124 (360)
T TIGR00858 73 WKGT---EAALLFSSGYLANVGVISAL----VG------------------KGDLILSDALNHASLIDGCRLSGARV--- 124 (360)
T ss_pred HhCC---CCEEEECchHHHHHHHHHHh----CC------------------CCCEEEEEccccHHHHHHHHhcCCce---
Confidence 8873 56788889999999887655 11 12345556667776554443332110
Q ss_pred cCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 003472 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (817)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~ 614 (817)
..++ .+|. +.+++.+++
T Consensus 125 -------------------------~~~~----------------~~d~------------------~~l~~~~~~---- 141 (360)
T TIGR00858 125 -------------------------RRYR----------------HNDV------------------EHLERLLEK---- 141 (360)
T ss_pred -------------------------EEec----------------CCCH------------------HHHHHHHHH----
Confidence 0000 1121 345556653
Q ss_pred CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCc-----eeec
Q 003472 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD-----IACY 687 (817)
Q Consensus 615 ~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PD-----ivtl 687 (817)
....+.++|+++++ ....|...+ +++|.++|+++|+++|+||+++ +|+.+. .....++++.|| +.++
T Consensus 142 ~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 215 (360)
T TIGR00858 142 NRGERRKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGTL 215 (360)
T ss_pred cccCCCeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence 11135689999997 777787665 8999999999999999999995 555543 223456777666 5699
Q ss_pred ccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 688 GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 688 gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+|++|. +.|.+++++++++.+..... .+..+.+.++.+++++.++++.++.. +++.+.....++++.+.+
T Consensus 216 sK~~~~---~gG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L 285 (360)
T TIGR00858 216 SKALGS---YGAYVAGSQALIDYLINRAR----TLIFSTALPPAVAAAALAALELIQEE---PWRREKLLALIARLRAGL 285 (360)
T ss_pred hhhhhc---cCcEEEcCHHHHHHHHHhCc----cceecCCCCHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHH
Confidence 999975 22668888988887643211 12344567889899999999887642 233344444444444333
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. +.+. .-....|.++.+.+... .....+...++++||+
T Consensus 286 ~----~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gI~ 323 (360)
T TIGR00858 286 E----ALGF-TLMPSCTPIVPVIIGDN------ASALALAEELQQQGIF 323 (360)
T ss_pred H----HcCC-ccCCCCCCEEEEEeCCH------HHHHHHHHHHHHCCee
Confidence 2 2332 11123466777776432 2345688888888874
No 119
>PLN02483 serine palmitoyltransferase
Probab=99.82 E-value=4.1e-18 Score=197.52 Aligned_cols=330 Identities=13% Similarity=0.104 Sum_probs=202.6
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccC---C-CCCCChHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVM---F-PENVYEPALEC 448 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~---~-~~~~~~~~~eL 448 (817)
....++++....+-+-+...|+ .++.|+|.| +++||.++ ++.+.+++.+++++++... . ..+.++.+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~el 151 (489)
T PLN02483 77 AWFDVVERVSNDNNKTLKRTTK--TRRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHREL 151 (489)
T ss_pred CeEEEEEeecCCCCceEEecCC--CceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHH
Confidence 3344666654443222222232 238999999 99999974 5788999999999887532 1 12357899999
Q ss_pred HHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccC
Q 003472 449 AELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (817)
Q Consensus 449 ae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~ 528 (817)
+++|+++.+. +..+++++|+.||..++.... ++.+.|..+..+|.+...++..+|
T Consensus 152 e~~lA~~~g~---~~ai~~~~G~~an~~~i~al~----------------------~~Gd~Vi~d~~~h~s~~~~~~~~G 206 (489)
T PLN02483 152 EELVARFVGK---PAAIVFGMGYATNSTIIPALI----------------------GKGGLIISDSLNHNSIVNGARGSG 206 (489)
T ss_pred HHHHHHHhCC---CcEEEECCHHHHHHHHHHHhC----------------------CCCCEEEEcchhhHHHHHHHHHcC
Confidence 9999999984 567778999999997776651 123456677777776665554443
Q ss_pred CCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHH
Q 003472 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L 608 (817)
... ..+ +++|++ ++ .+.+++.+
T Consensus 207 a~v------------------------------~~~--------------~~~d~~----------~l----e~~l~~~i 228 (489)
T PLN02483 207 ATI------------------------------RVF--------------QHNTPS----------HL----EEVLREQI 228 (489)
T ss_pred CeE------------------------------EEE--------------eCCCHH----------HH----HHHHHhhh
Confidence 211 001 123321 11 12223222
Q ss_pred hcCCCC-CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-c-cccccccchhhhcCCCC---
Q 003472 609 LQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVP--- 682 (817)
Q Consensus 609 ~~~~~~-~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-G-fGRtG~~~a~e~~gv~P--- 682 (817)
.....+ ..+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ | +|++|.. ..+++++.|
T Consensus 229 ~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~ 302 (489)
T PLN02483 229 AEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADV 302 (489)
T ss_pred hccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccC
Confidence 110000 11223468999998 888888776 9999999999999999999996 2 4666654 567888765
Q ss_pred cee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCC--CCCHHHHHHHHHHHHHhcCcC---chhcHHHH
Q 003472 683 DIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDPQ---TNHNIIPE 755 (817)
Q Consensus 683 Div--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~--~gnPla~AAAlA~L~~l~~~~---l~~~l~~~ 755 (817)
||+ +++|++|. +.|.+++++++++.+... .++++| +.+|..++++.++|+++..++ ...+..++
T Consensus 303 dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~~------~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~ 373 (489)
T PLN02483 303 DIMMGTFTKSFGS---CGGYIAGSKELIQYLKRT------CPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ 373 (489)
T ss_pred cEEEEecchhccc---CceEEEcCHHHHHHHHHh------CccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence 776 99999973 124588899999988532 234444 358889999999999886422 11112222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
-+...+++.+.|.+. ..+...+ ..+.+..+.+... .....|...++++||.
T Consensus 374 l~~~~~~l~~~L~~~--G~~v~~~--~~sp~~~l~l~~~------~~~~~~~~~Ll~~GI~ 424 (489)
T PLN02483 374 IRENSNFFRSELQKM--GFEVLGD--NDSPVMPIMLYNP------AKIPAFSRECLKQNVA 424 (489)
T ss_pred HHHHHHHHHHHHHHC--CCcccCC--CCCCEEEEEECCH------HHHHHHHHHHHHCCcE
Confidence 223333333333221 1222211 1234555555433 2345688889999974
No 120
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.80 E-value=3.6e-19 Score=190.43 Aligned_cols=253 Identities=15% Similarity=0.060 Sum_probs=197.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 410 TQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 410 ~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
|.+||.+.||+|.+|+.+.+++++... ..++++..+++|+++|+++-.+ +-++.++|-.-||++.|-..-+..
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~l 255 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKKL 255 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHHC
Confidence 677888779999999999999987543 2345678899999999999874 578899999999999998762221
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
...+|.-+.+.|.+++.++.-++.+.+-
T Consensus 256 --------------------pgcei~SD~gNHASMI~GIrns~v~K~I-------------------------------- 283 (570)
T KOG1360|consen 256 --------------------PGCEIFSDEGNHASMIQGIRNSRVPKHI-------------------------------- 283 (570)
T ss_pred --------------------CCcEEeccccchHHHHHHhhhcCCccee--------------------------------
Confidence 2478999999999988877666543221
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
..|||. ++|++.|+.. .+.....|-+|.| .+|.|.+.| +++
T Consensus 284 ------------FrHND~------------------~hL~~lL~~~----~~svPKivAFEtV-hSM~Gavcp----lee 324 (570)
T KOG1360|consen 284 ------------FRHNDL------------------DHLEQLLQSS----PKSVPKIVAFETV-HSMDGAVCP----LEE 324 (570)
T ss_pred ------------eccCCH------------------HHHHHHHHhC----CCCCCceEEEeee-eccCCCcCC----HHH
Confidence 126775 6788888863 3445567788998 999999999 999
Q ss_pred HHHHHhhcCCcEEEeeeeecccccccc--chhhhcCC--CCcee--ecccccC--CCCCcceEEEechHHHhhhcCCCcc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSKL 717 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv--~PDiv--tlgK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~ 717 (817)
|.+++++||++-.+||||. .|-.|.. +..|+-|| +-||+ |+||++| ||| +..+..+.|.+++.+.
T Consensus 325 lcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyAa- 397 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYAA- 397 (570)
T ss_pred HHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhcC-
Confidence 9999999999999999994 6667774 34577777 56888 9999999 687 8899999999976432
Q ss_pred ceeecccCCCCCHHHHHHHHHHHHHhcCc---CchhcHHHHHHHHHHHHHHH
Q 003472 718 KALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 718 ~~~~h~~T~~gnPla~AAAlA~L~~l~~~---~l~~~l~~~~~~lg~~l~~~ 766 (817)
.+.+|.+-.|.-++-|++++++++.+ .++..-++++.++.+.|.+.
T Consensus 398 ---GFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~ 446 (570)
T KOG1360|consen 398 ---GFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL 446 (570)
T ss_pred ---ceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999753 24444556666666655443
No 121
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.74 E-value=2.1e-16 Score=174.53 Aligned_cols=298 Identities=12% Similarity=0.035 Sum_probs=186.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC----CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~----~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
.||.||+ +.+|||.+||+|.+|++++++++.+.. ......+...++.+.|+++.+. +..++++||++|+.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 7899998 999999989999999999999865421 1124577888999999999873 46788899999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++.+. .. .+.|.....+|+....++...|..
T Consensus 76 ~~~~~~~-----~~-----------------gd~Vl~~~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLA-----GK-----------------GDLIISDSLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhc-----CC-----------------CCEEEEehhhhHHHHHHHHHcCCc-------------------------
Confidence 8886551 11 123344556676544332222111
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+.+| ..| .+.+++.+++. .++.+.++|+++++ +...|.
T Consensus 109 -----~~~~~--------------~~~------------------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFK--------------HND------------------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEec--------------CCC------------------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 00001 001 13355555431 11356789999997 888888
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcC---CCCcee--ecccccCCCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~g---v~PDiv--tlgK~LggGy~PlsAvl~s~~i~d 709 (817)
..+ +++|.++|+++|+++|+||++. +|..+..+ ....++ ..+|++ +++|.++. +.|.++.++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 766 8999999999999999999994 54443211 111222 245766 68999874 3356888888887
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gI 789 (817)
.+..... .+..+...++..++++.++|+.+++ .++..++...+.+++.+.+.+. ..+.+.. .+.++..
T Consensus 220 ~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~---~~~~~~~ 287 (349)
T cd06454 220 YLRSYAR----GFIFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKEL--GFPVGGS---PSHIIPP 287 (349)
T ss_pred HHHHhch----hhhccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc--CCcccCC---CCCcEEE
Confidence 7643211 1234456789999999999998865 2344555555555555444322 2222221 1222222
Q ss_pred EEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 790 ELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+..+. .....+...++++||.
T Consensus 288 ~~~~~~-----~~~~~~~~~L~~~gI~ 309 (349)
T cd06454 288 LIGDDP-----AKAVAFSDALLERGIY 309 (349)
T ss_pred EeCCCh-----HHHHHHHHHHHhCCce
Confidence 222211 2446677788888874
No 122
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.67 E-value=4.8e-15 Score=167.17 Aligned_cols=306 Identities=12% Similarity=0.032 Sum_probs=184.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhc-cccCC-----CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 406 ASWWTQGPDATLQIELARDMGYTAARF-GHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 406 sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~-----~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++++...||+ +|++++++..|+ .. .++.. ..+..+...+++++|+++++.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~~-~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKHN-PPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCCc-CcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 45667789999 999999988877 32 11111 1233456778999999988742 3378888888888899998
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.+ +... ++.+.|.+...+||++..++.+.+... . . .+
T Consensus 100 ~~-~~~~------------------~~gd~Vl~~~~~h~~~~~~~~~~~~~~---g----------~-----------~~ 136 (398)
T cd00613 100 AA-IRAY------------------HKRNKVLVPDSAHPTNPAVARTRGEPL---G----------I-----------EV 136 (398)
T ss_pred HH-Hhcc------------------cCCCEEEEcCccCcchHHHHHHhcccC---C----------c-----------EE
Confidence 88 3221 123566678889999988877765321 0 0 00
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++.++.. ..| .+.+++.+. .++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG-----------TVD------------------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC-----------CcC------------------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 111111000 001 144555543 35889999996 5 56777
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeec---cccccccchhhhcCCCCceee--cc---cccCCCCCcceEEE-echHHHhh
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGCVPDIAC--YG---KLLTGGVIPLAATL-ATNAVFDS 710 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TG---fGRtG~~~a~e~~gv~PDivt--lg---K~LggGy~PlsAvl-~s~~i~d~ 710 (817)
.+++++|+++|++||+++|+|++|++ ++++|.+ .+|+++ ++ |++|+| .|.++++ +++++.+.
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~--------~~d~~~~s~~K~~~p~g~G-gp~~g~l~~~~~~~~~ 245 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY--------GADIVVGNLQKTGVPHGGG-GPGAGFFAVKKELVRF 245 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc--------CCCEEEeeccccCCCCCCC-CCceeEEEEhhhhHhh
Confidence 35789999999999999999999853 2233322 489886 33 555666 4655555 55677665
Q ss_pred hcCCC----------ccce-------------eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 711 FVGDS----------KLKA-------------LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 711 ~~~~~----------~~~~-------------~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
+.... .... ....+|++++++.++++.++++.+.+++ .+++.++...+++++.++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g-~~~~~~~~~~~~~~l~~~L 324 (398)
T cd00613 246 LPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEG-LKEIAERAHLNANYLAKRL 324 (398)
T ss_pred CCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 42110 0000 1235578899999999999999885533 2445566666777666655
Q ss_pred HHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+..... ...+.+... +.+.+... .+ .....+...++++||+
T Consensus 325 ~~~~~~~-~~~~~~~~~--v~~~~~~~---~~-~~~~~~~~~L~~~gi~ 366 (398)
T cd00613 325 KEVGGVL-PFNGPFFHE--FVLRLPPL---YG-IRAEDLAKALIDGGFH 366 (398)
T ss_pred HhcCCcc-cCCCCeeEE--EEEEcCCc---ch-HHHHHHHHhhhhcCcc
Confidence 4421111 122233322 23444321 00 2456677888888875
No 123
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.61 E-value=3.8e-14 Score=157.63 Aligned_cols=219 Identities=12% Similarity=0.031 Sum_probs=149.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccc
Q 003472 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (817)
Q Consensus 410 ~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~ 489 (817)
+++||.++||+|++|+.+++++++ +.++.+.+|+++|+++.+.+ .+.+++++||++||..++.... .
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~-----~- 93 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALE-----P- 93 (346)
T ss_pred cccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhC-----C-
Confidence 458888889999999999999984 34688999999999998742 2689999999999999998761 1
Q ss_pred cccccccCCCccccccceEEEE--EcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCch
Q 003472 490 EVLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (817)
Q Consensus 490 G~~~~~~~~~~~~~~~r~~II~--~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~ 567 (817)
++ ..|+. .+..+|.+...++.+.|...+
T Consensus 94 --------------~g-d~Vli~~~d~p~~~s~~~~~~l~ga~~~----------------------------------- 123 (346)
T TIGR03576 94 --------------PG-RKVVHYLPEKPAHPSIPRSCKLAGAEYF----------------------------------- 123 (346)
T ss_pred --------------CC-CEEEECCCCCCCchhHHHHHHHcCCEEe-----------------------------------
Confidence 11 24443 335677766555555432100
Q ss_pred hhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHH
Q 003472 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (817)
Q Consensus 568 ~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr 647 (817)
.+++. +.++. . .+..+||+++ .++.|.+. +..-+++|.
T Consensus 124 -----------~~~~l------------------~~l~~-~---------~~~~lIiitg--~s~~G~v~-~~~~L~~i~ 161 (346)
T TIGR03576 124 -----------ESDEL------------------SELKK-I---------DGTSLVVITG--STMDLKVV-SEEDLKRVI 161 (346)
T ss_pred -----------ccCCH------------------HHHhh-C---------cCceEEEEEC--CCCCCccc-CHHHHHHHH
Confidence 01111 11211 1 1234677777 36677765 477799999
Q ss_pred HHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 648 KECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 648 ~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
++|++||+++|+||++. .|..|.. +...+++ +|++ +++|+|+|. -+|.+++++++++.+.... ..
T Consensus 162 ~la~~~~~~livDEAy~-~~~~~~~~~~~~~~~~--~divv~s~SKalaG~--r~G~v~~~~~li~~l~~~~------~~ 230 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASG-ARVRRLYGQPPALDLG--ADLVVTSTDKLMDGP--RGGLLAGRKELVDKIKSVG------EQ 230 (346)
T ss_pred HHHHHcCCEEEEECCcc-ccccccCCCCCHHHcC--CcEEEeccchhcccc--ceEEEEeCHHHHHHHHHhh------cC
Confidence 99999999999999994 4433321 1222333 5765 889998653 2567999999999886432 22
Q ss_pred cCCCCCHHHHHHHHHHHHHhc
Q 003472 724 HSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~ 744 (817)
+.|+.+|.+++++.++|+.+.
T Consensus 231 ~~~s~~~~~~~aa~~aL~~~~ 251 (346)
T TIGR03576 231 FGLEAQAPLLAAVVRALEEFE 251 (346)
T ss_pred cccCccHHHHHHHHHHHhhcc
Confidence 334478889999999998754
No 124
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=149.32 Aligned_cols=194 Identities=22% Similarity=0.249 Sum_probs=129.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--cCCCCCCcHHHHHHhCCCCccccCCCcccccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~--~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (817)
+|++||+.+|++++|||.|++||+++|. ++|.+|+|||||. +|+..+.....+.+..
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~---------------- 59 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRAT---------------- 59 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHh----------------
Confidence 5789999999999999999999999994 8999999999997 4543333322222221
Q ss_pred cchhhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhc-C-CC
Q 003472 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES-G-GV 191 (817)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~-~-~~ 191 (817)
.-++.+.+ +..+ ..+..+.. + .+
T Consensus 60 ----------------~~~l~~~~---------------------------------~~~~------~~ae~L~~~~~~d 84 (354)
T COG0857 60 ----------------SSSLTYAE---------------------------------PLVL------SFAEVLLSTGQDD 84 (354)
T ss_pred ----------------hhhcccCc---------------------------------ccch------hhHHHHhccccch
Confidence 00011100 1122 12222210 1 12
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC----CCCchhhHhhhCCCCEEEEEcCCCChHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP----SGSLQCDLYRPFRLPGILVGDGRLGGISGT 267 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~----~~~~~~~la~~l~~pvilV~~~~~g~i~~~ 267 (817)
..+++|.+.|.+..+. +|++++|| ..|.- ....|+++|+.|+++++||++...-+..+.
T Consensus 85 ~l~e~i~~~y~e~~~~-------------~~~vv~~g----~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~ 147 (354)
T COG0857 85 VLLEEILANYAELAKD-------------ADVVVVEG----DVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYEL 147 (354)
T ss_pred HHHHHHHHHHHHHhcc-------------CceEEecc----ceeccccCccccccHHHHhhcCcchhhccccccCChhhh
Confidence 3456777777776644 89999999 44522 347899999999999999999887665554
Q ss_pred HH----HHHHHHhCCCcEEEEEEccCC----CCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchhh
Q 003472 268 IS----AYESLKLRGYDVVAVVFEDHG----LVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDLM 322 (817)
Q Consensus 268 ~~----~~~~l~~~~~~v~gvi~n~~~----~~~~~~l~~~~~~-~~pvlg-iP~~~~~~~~~~~ 322 (817)
.. ....+...+.++.|||+|+.. ....+.+.+.+++ +..+++ +|...-+.+..+.
T Consensus 148 ~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~ 212 (354)
T COG0857 148 KSRVELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVR 212 (354)
T ss_pred hhHHHHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHH
Confidence 44 444444455589999999762 2234556666665 789999 8998888877665
No 125
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.42 E-value=6.7e-12 Score=137.59 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=118.4
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcC-CCCcee--ecccccC
Q 003472 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLG-CVPDIA--CYGKLLT 692 (817)
Q Consensus 617 ~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~g-v~PDiv--tlgK~Lg 692 (817)
..++.+|++++. +...|.+. |.+.+++|.++|+++|+++|+||++++++..+.... ....+ ...|++ +++|.++
T Consensus 130 ~~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 130 TPKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred CccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 357889999996 88888765 788999999999999999999999998876665431 01111 122444 7899999
Q ss_pred -CCCCcceEEEech-HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 693 -gGy~PlsAvl~s~-~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
+| .++|++++++ ++.+.+... ....|+..++.+++++.+.|+..+ +..+++.+......+++. +.
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~----~~ 274 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKKL------LPYTTSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALL----EA 274 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHH----HH
Confidence 77 7999999999 788887532 234467888888888888887663 122344444444444333 33
Q ss_pred HHcCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 771 ISSHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 771 l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+++.+... .+...|.+..+.+... .....+.+.+.++||
T Consensus 275 L~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~l~~~gi 314 (350)
T cd00609 275 LKELGPLVVVKPSGGFFLWLDLPEG------DDEEFLERLLLEAGV 314 (350)
T ss_pred HHhcCCccccCCCccEEEEEecCCC------ChHHHHHHHHHhCCE
Confidence 44444322 3445678888877543 223344555555575
No 126
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-11 Score=135.48 Aligned_cols=243 Identities=12% Similarity=0.039 Sum_probs=171.5
Q ss_pred ceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccCCC----CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~~~----~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
+.|.+.| =++||.++ +-..++++.+.++++++.... .++++.+.++++..+++++. +.++.+..|..+|
T Consensus 137 ~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~---e~a~vF~mGf~TN 210 (519)
T KOG1357|consen 137 RCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGV---EDAIVFSMGFATN 210 (519)
T ss_pred eeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCC---cceEEEecccccc
Confidence 3445444 34555421 556667777777887765311 24578999999999999985 5677778887777
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccc
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (817)
..-+... -++...|.-+.-.|++......++|....-
T Consensus 211 s~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaRLSgAtiRV--------------------- 247 (519)
T KOG1357|consen 211 SMNIPSL----------------------LGKGSLIISDELNHASLITGARLSGATTRV--------------------- 247 (519)
T ss_pred ccCccee----------------------ecCCcceeeccccchheeccccccCceEEE---------------------
Confidence 6555444 234567888999999998888888653211
Q ss_pred ccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcC----CCC-CCCCcEEEEEEcccc
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN----PGL-KVSGCIGALIIEPVV 629 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~----~~~-~~~~~iAAvIvEPV~ 629 (817)
..|||+ ..||+.|++. +.+ ..+.+.--||+|.+
T Consensus 248 -----------------------fkHNdm------------------~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi- 285 (519)
T KOG1357|consen 248 -----------------------FRHNDM------------------QGLERLLRDAIVYGQPKTHRPWKKILICVEGI- 285 (519)
T ss_pred -----------------------EecCCH------------------HHHHHHHHHHHhcCCCCcCCcchheeeeeccc-
Confidence 127776 3445555442 111 23566779999998
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec--cccccccchhhhcCCCC---cee--ecccccC--CCCCcceE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP---DIA--CYGKLLT--GGVIPLAA 700 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG--fGRtG~~~a~e~~gv~P---Div--tlgK~Lg--gGy~PlsA 700 (817)
.++.|.+.- ++++.++|++|.+.|++||.|++ .|+|| .+.++++|+.| ||+ |+-|+.| |||
T Consensus 286 ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g~d~~dvDImMGtftKSfga~GGy----- 355 (519)
T KOG1357|consen 286 YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFGVDPEDVDIMMGTFTKSFGAAGGY----- 355 (519)
T ss_pred eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccCCCchhheeecceehhhcccccce-----
Confidence 899998887 89999999999999999999973 34555 55788999876 665 8899887 466
Q ss_pred EEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 701 TLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 701 vl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
+.+++++.+.+..... .+-+...-.|..+...+..+++|..++
T Consensus 356 iagsk~lid~lrt~s~----~~~yat~~sppvaqq~~ssl~~i~G~d 398 (519)
T KOG1357|consen 356 IAGSKELIDYLRTPSP----SALYATSLSPPVAQQILTSVKHIMGED 398 (519)
T ss_pred ecCcHHHHhhhccCCC----ceeecccCChHHHHHHHHHHHhhcCCC
Confidence 8999999999865421 233333457888888999999997543
No 127
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.36 E-value=1.2e-10 Score=131.09 Aligned_cols=301 Identities=12% Similarity=0.104 Sum_probs=175.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.+||+..+ ...++ - +|.+.+|+.+++........ ....-..+|.+.++++++-. .+.+++++++++|+..+++
T Consensus 29 ~~i~l~~~--~~~~~-~-~~~~~~a~~~~~~~~~~~~y--~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 29 EMIWMGQN--TNHLG-P-HEEVREAMIRCIEEGEYCKY--PPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVMR 101 (380)
T ss_pred CeEEccCC--CCCCC-C-CHHHHHHHHHHHhcCCCCCC--CCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHHH
Confidence 56777653 23344 3 79999999998875322111 11122456778888876643 3579999999999999988
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . + ...|+..+.+|+... ..+...|..
T Consensus 102 ~~~-----~---------------~-gd~vl~~~p~y~~~~-~~~~~~g~~----------------------------- 130 (380)
T PRK06225 102 AFL-----S---------------P-GDNAVTPDPGYLIID-NFASRFGAE----------------------------- 130 (380)
T ss_pred Hhc-----C---------------C-CCEEEEcCCCCcchH-HHHHHhCce-----------------------------
Confidence 761 1 1 135777777776421 111111111
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
.+++|-. ++.+ -+. -| .+.+++.+. ...-+.+++.| +.-.|... +
T Consensus 131 -~~~v~~~-------------~~~~-~~~--~d--------~~~l~~~~~-------~~~~~v~l~~p--~NptG~~~-~ 175 (380)
T PRK06225 131 -VIEVPIY-------------SEEC-NYK--LT--------PELVKENMD-------ENTRLIYLIDP--LNPLGSSY-T 175 (380)
T ss_pred -EEeeccc-------------cccC-Ccc--CC--------HHHHHhhcC-------CCceEEEEeCC--CCCCCcCC-C
Confidence 0111100 0000 000 00 134554443 12223445677 34556655 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc----eeecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD----ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+.+++|.++|+++|+++|+||++..|. .+..... .+.|| +.+++|.+| .| +.+|++++++++++.+...
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~---~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYRDFA-REHTLAA---EYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSI 250 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHHHHh-ccCCchh---hcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHH
Confidence 7889999999999999999999997663 2222111 22333 568999998 68 7999999999999887431
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC--cceEEeeeeEEEEEEe
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT--VQRVVALGTLCAIELQ 792 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~--V~~VrG~Glm~gIel~ 792 (817)
...+++.|.++++++.++|+.. ++..+++.+..+...+ .+.+.+++.+. +..+...|.++.+++.
T Consensus 251 -------~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 317 (380)
T PRK06225 251 -------VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQK----LIKEAVDEIEGVFLPVYPSHGNMMVIDIS 317 (380)
T ss_pred -------HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHH----HHHHHHHhCcCCccccCCCCCeEEEEEcc
Confidence 2356788999998888887642 2222333332222222 33444554432 2223456778888886
Q ss_pred cCCCCCCcchHHHHHHHHHHcCCC
Q 003472 793 AAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
... .....+...+.++||.
T Consensus 318 ~~~-----~~~~~l~~~l~~~gi~ 336 (380)
T PRK06225 318 EAG-----IDPEDLVEYLLERKIF 336 (380)
T ss_pred ccc-----CCHHHHHHHHHHCCEE
Confidence 432 2345677777788873
No 128
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.35 E-value=8.3e-11 Score=131.30 Aligned_cols=293 Identities=14% Similarity=0.046 Sum_probs=160.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccC-CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 003472 414 DATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~ 492 (817)
-|. ||.+++|+.+++....... ..........++.+.|+++++.+ -..++|+++|++||+.|++.+ +....+
T Consensus 30 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~-~~~~~~---- 102 (371)
T PRK13520 30 TEP-HPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAA-RNLAKA---- 102 (371)
T ss_pred cCc-hHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHH-HhhccC----
Confidence 466 9999999999887632221 11122344468889999988743 235789999999999999998 332111
Q ss_pred ccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
.+.+||..+.++.. ...+....|.. +..++.+...
T Consensus 103 ------------~~~~vl~~~~~h~s-~~~~~~~~g~~----------------------------~~~v~~~~~~---- 137 (371)
T PRK13520 103 ------------EKPNIVVPESAHFS-FDKAADMLGVE----------------------------LRRAPLDDDY---- 137 (371)
T ss_pred ------------CCceEEecCcchHH-HHHHHHHcCce----------------------------EEEecCCCCC----
Confidence 12367776655432 21111111110 1112211100
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhh
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~ 652 (817)
..| .+.|++.+.+ +....+++.+ ....|.+.| +++|.++|++
T Consensus 138 -------~~d------------------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~ 179 (371)
T PRK13520 138 -------RVD------------------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALE 179 (371)
T ss_pred -------cCC------------------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHH
Confidence 011 2566777652 2223334444 245688876 9999999999
Q ss_pred cCCcEEEeeeeeccc----cccccchhhhcCCCCceeec--ccccCCCCCcceEEEec-hHHHhhhcCCCcc----ceee
Q 003472 653 RKIPVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFVGDSKL----KALL 721 (817)
Q Consensus 653 ~GilLI~DEV~TGfG----RtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s-~~i~d~~~~~~~~----~~~~ 721 (817)
+|+++++||+|+|+. +.+..+..... ..|.+++ -|-+.+| .|+|+++++ +++.+.+...... ..+.
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 256 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALAVDTPYLTSKKQAT 256 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhcccCccccCCCCcc
Confidence 999999999997652 21111222222 2465543 3543445 789888864 4466665321100 0111
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC-CcceEEeeeeEEEEEEecCCCCCCc
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR-TVQRVVALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p-~V~~VrG~Glm~gIel~~~~~~~~~ 800 (817)
+.+|.. +..++++.++|+.+.++++ ++..++...+.++|.+.+.+. ... .+..+ .-++.+.+.+
T Consensus 257 ~~gt~~--~~~~~~~~~al~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~---~~~v~~~~~~------- 321 (371)
T PRK13520 257 LTGTRS--GAGVAATYAVMKYLGREGY-RKVVERCMENTRWLAEELKER--GFEPVIEPV---LNIVAFDDPN------- 321 (371)
T ss_pred eEeecc--ChHHHHHHHHHhhhcHhHH-HHHHHHHHHHHHHHHHHHHhC--CCEEecCCC---ceEEEEecCC-------
Confidence 223333 3458888889998866443 445555666666555544332 222 12222 2355565531
Q ss_pred chHHHHHHHHHHcCCC
Q 003472 801 CLIELFLYNFLTTGMH 816 (817)
Q Consensus 801 ~~~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||.
T Consensus 322 --~~~v~~~L~~~gi~ 335 (371)
T PRK13520 322 --PDEVREKLRERGWR 335 (371)
T ss_pred --HHHHHHHHHHCCce
Confidence 24566677777763
No 129
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.34 E-value=8.7e-11 Score=131.60 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++..| +.--|.+.+ .++++++|+.+++++|+||++++|++.|.....+..+..|+++ +|||++| .| ++
T Consensus 164 i~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lR 236 (368)
T PRK03317 164 VFLTSP--NNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAG-GR 236 (368)
T ss_pred EEEeCC--CCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccch-hh
Confidence 345555 566777776 7788888888899999999999998777666666666678887 8999998 68 79
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|++++++++++.+... ..+|..++++++++.++|+..+ .+.++.+++.+ .++.+.+.+++++.
T Consensus 237 iG~~~~~~~~~~~l~~~--------~~~~~~s~~~~~a~~~~l~~~~------~~~~~~~~~~~-~~~~l~~~L~~~g~- 300 (368)
T PRK03317 237 LGYLAAAPAVVDALRLV--------RLPYHLSAVTQAAARAALRHAD------ELLASVAALRA-ERDRVVAWLRELGL- 300 (368)
T ss_pred hhhhhCCHHHHHHHHhc--------CCCCCCCHHHHHHHHHHhhCHH------HHHHHHHHHHH-HHHHHHHHHHHCCC-
Confidence 99999999999988532 2467889999999988886432 22222223322 12234445555442
Q ss_pred ceEEeeeeEEEE-EEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAI-ELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gI-el~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+ ++. ....+...++++||+
T Consensus 301 ~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~Gv~ 331 (368)
T PRK03317 301 RVAPSDANFVLFGRFA---------DRHAVWQGLLDRGVL 331 (368)
T ss_pred EeCCCCCcEEEEeccC---------CHHHHHHHHHHCCEE
Confidence 112233444322 221 235677888899974
No 130
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.32 E-value=1.6e-10 Score=131.81 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHH-HhccccC----CCCCCChHHHHHHH----HHHhhcCCCCcceEE-EeCChHHHHHHHHHHHHHHhhc
Q 003472 418 QIELARDMGYTA-ARFGHVM----FPENVYEPALECAE----LLLQGVGKGWASRAY-FSDNGSTAIEIALKMAFRKFSF 487 (817)
Q Consensus 418 hP~V~~Ai~~q~-~~~~~~~----~~~~~~~~~~eLae----~L~~~~~~~~~~~v~-f~~SGseA~E~AlklA~r~~t~ 487 (817)
||++.+|+...+ .+++... ..++ ++...+|++ +++++++. +.++ +++||+.||.+++.... +
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~----~ 112 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL----K 112 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc----C
Confidence 899999999995 8876532 1122 588889998 99999984 5674 57999999999988761 1
Q ss_pred cccccccccCCCccccccceEEEEEcCCccCCc-cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc
Q 003472 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (817)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t-~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (817)
+| ..|++-+. -||++ ..+...+.. . .++.. .+++. .+.
T Consensus 113 -~G----------------D~Vl~~~~-~~~~~~~~g~~~~~~----~----~~~~~--~~~~~-------------~~~ 151 (416)
T PRK13034 113 -PG----------------DTILGMSL-SHGGHLTHGAKVSLS----G----KWYNA--VQYGV-------------DRL 151 (416)
T ss_pred -CC----------------CEEEEcCc-cceeeeecCCcceec----c----ceeee--EEccc-------------ccc
Confidence 11 24555444 45432 211111100 0 00000 00000 000
Q ss_pred hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHH
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 567 ~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~ 645 (817)
. ..+|+ +.+++.++. .+..+|++ +++ .| +..+ +++
T Consensus 152 ~-----------~~~d~------------------~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~ 187 (416)
T PRK13034 152 T-----------GLIDY------------------DEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FAR 187 (416)
T ss_pred c-----------CCcCH------------------HHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHH
Confidence 0 01221 445666642 12356777 675 44 3333 889
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
|.++|++||++||+|+.| ++|-+|.......++ ..|++ +++|.|+|+. -|+++++++.+....... ..++
T Consensus 188 l~~la~~~g~~livD~Ah-a~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~--GG~v~~~~~~~~~~~~~~----~~~~ 259 (416)
T PRK13034 188 FREIADEVGALLMVDMAH-IAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR--GGMILTNDEEIAKKINSA----VFPG 259 (416)
T ss_pred HHHHHHHcCCEEEEeCcc-cccCcccCCCCCCCC-CceEEEEeCcccCCCCC--CeEEEECcHHHHHHHHhh----cCCc
Confidence 999999999999999999 577766532111112 36876 6689996542 355666554433321110 1122
Q ss_pred cCCCCCH-HHHHHHHHHHHHhcC--cCchhcHHHHHHHHHHH
Q 003472 724 HSYSAHA-LGCAAAAKSIKWFKD--PQTNHNIIPERRILREL 762 (817)
Q Consensus 724 ~T~~gnP-la~AAAlA~L~~l~~--~~l~~~l~~~~~~lg~~ 762 (817)
.+-+.+| ..++++++.++.++. +++.+++.++++++.+.
T Consensus 260 ~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~ 301 (416)
T PRK13034 260 LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEV 301 (416)
T ss_pred ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 1112233 444445566666532 22356666666666553
No 131
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.29 E-value=8e-11 Score=132.81 Aligned_cols=236 Identities=15% Similarity=0.107 Sum_probs=143.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.++...+|+++|+++.+ .+.+++++||++|+..+++... . ++ .+||. ...+||
T Consensus 50 r~~~p~~~~le~~la~l~g---~~~~~~~~sG~~Ai~~al~al~-----~---------------~G-d~Vl~-~~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEG---AERAVATATGMSAIQAALMTLL-----Q---------------AG-DHVVA-SRSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh-----C---------------CC-CEEEE-ecCCcc
Confidence 3456778899999999887 3678999999999999997551 1 11 24555 455666
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.+...+.-. . ...|. .+..++ .+|
T Consensus 105 ~t~~~~~~~-----~--------~~~g~-----------~v~~v~----------------~~d---------------- 128 (380)
T TIGR01325 105 STVGFISEI-----L--------PRFGI-----------EVSFVD----------------PTD---------------- 128 (380)
T ss_pred hHHHHHHHH-----H--------HHhCC-----------EEEEEC----------------CCC----------------
Confidence 654322110 0 00000 000111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+++.++ .++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++.+ -.. .-.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~-----~pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQ-----QPL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccC-----Cch
Confidence 134555443 24679999986 666677765 899999999999999999998522 111 122
Q ss_pred CCCCceee--cccccCC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 679 gv~PDivt--lgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
...+|+++ ++|.++| |....|++++++++++.+.... ..++. ..+|..++.++..++.+.. ..++..++
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~----~~~g~--~~~p~~a~~~l~~l~tl~~--r~~~~~~~ 259 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL----RHTGP--AMSPFNAWVLLKGLETLSL--RMQKQFDS 259 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH----HhhCC--CCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 34579885 8999987 4333467778888877664210 01222 2456777777777666643 23445555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcce------------------EEeeeeEEEEEEe
Q 003472 756 RRILRELWDLELIQQISSHRTVQR------------------VVALGTLCAIELQ 792 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~------------------VrG~Glm~gIel~ 792 (817)
+..+.++| +++|.|.. -.|-|.|+.|+|.
T Consensus 260 a~~la~~L--------~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 260 ALAIAEWL--------QAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHH--------HcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 55555433 33443222 2477999999997
No 132
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.28 E-value=7.1e-11 Score=132.66 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=149.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..+++... .. ...|+.....||+.
T Consensus 37 ~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~-----~~----------------gd~Vl~~~~~y~~~ 92 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALL-----KA----------------GDHVVASDDLYGGT 92 (369)
T ss_pred CCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEECCCCcchH
Confidence 4578889999999999873 678999999999999998762 11 13577777777663
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+... ... .|.- +..++ .+|
T Consensus 93 ~-~~~~~~-~~~------------~g~~-----------~~~v~----------------~~d----------------- 114 (369)
T cd00614 93 Y-RLFERL-LPK------------LGIE-----------VTFVD----------------PDD----------------- 114 (369)
T ss_pred H-HHHHHH-Hhh------------cCeE-----------EEEeC----------------CCC-----------------
Confidence 2 211100 000 0000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|.+ +...|.+.+ +++|.++|++||+++|+||++. .+.. ...+.
T Consensus 115 -~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~-----~~~~~ 174 (369)
T cd00614 115 -PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYL-----QRPLE 174 (369)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhc-----CChhh
Confidence 144555553 25678999997 788888876 8999999999999999999984 3222 12223
Q ss_pred CCCcee--ecccccCC-CCCcceEEEech-HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~-~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
..+|++ +++|.++| |-...|++++++ ++++.+.... ...++..+|..+++++..|+.+.. ..++..++
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~n 246 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------LALGTILSPFDAWLLLRGLKTLPL--RMERHSEN 246 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH------HhhCCCCCHHHHHHHHcCCCCHHH--HHHHHHHH
Confidence 357887 78999986 325678888877 7777664321 113345678888887666654421 23455555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+.++.+ .++++|.|..| .|.|.|+.|++..
T Consensus 247 a~~la~--------~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~ 294 (369)
T cd00614 247 ALKVAE--------FLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG 294 (369)
T ss_pred HHHHHH--------HHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence 555544 33444543333 4679999999963
No 133
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.23 E-value=4.6e-10 Score=126.85 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=145.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcccc-----CCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 411 QGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 411 ~~LGh~~hP~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
.-+|.- .+++++|+.+....++.. .......+...++.++++++++. +.++|+++|++|+..|++...
T Consensus 27 ~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~---~~~~~~~g~t~a~~~al~~l~--- 99 (387)
T PRK09331 27 QRGGIL-TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM---DEARVTHGAREGKFAVMHSLC--- 99 (387)
T ss_pred hcCCCC-CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhc---
Confidence 357888 999999999887544321 11122356788999999999983 678999999999999988762
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
.+ ..+|++- ...|-+...++...|... ..++.+
T Consensus 100 --~~----------------gd~Vlv~-~~~h~s~~~~~~~~G~~~----------------------------~~v~~~ 132 (387)
T PRK09331 100 --KK----------------GDYVVLD-GLAHYTSYVAAERAGLNV----------------------------REVPKT 132 (387)
T ss_pred --CC----------------CCEEEEC-CCchHHHHHHHHHcCCEE----------------------------EEEeCc
Confidence 11 1245554 444544444333332110 011110
Q ss_pred --chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHH
Q 003472 566 --EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (817)
Q Consensus 566 --~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl 643 (817)
..+ ..| .+.+++.+++.. .....++.+|+++-+ .+..|...+ +
T Consensus 133 ~~~~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l 177 (387)
T PRK09331 133 GYPEY-----------KIT------------------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----A 177 (387)
T ss_pred cCcCC-----------CcC------------------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----H
Confidence 000 011 144555554210 011235778888876 677787776 9
Q ss_pred HHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccce----
Q 003472 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (817)
Q Consensus 644 ~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~---- 719 (817)
++|.++|++||+++|+||+|+ +|..+.- ...+|+.-.+.++.|.++++ .++|.+++++++++.+....+...
T Consensus 178 ~~I~~la~~~g~~livD~a~~-~g~~~~~--~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~~~~~~~~~~ 253 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYT-VGRMPVD--GKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRTSRKFGVKEV 253 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcc-cCCcCCC--HHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccccCCCcccce
Confidence 999999999999999999994 5443321 22344433334789999977 689999999998887644221000
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
-..++| -.+...++++++++.+.+
T Consensus 254 ~~~~~~--~~~~~~~~~~aal~~~~~ 277 (387)
T PRK09331 254 ELLGCT--LRGAPLVTLMASFPHVVE 277 (387)
T ss_pred eeecee--cCchHHHHHHHHHHHHHH
Confidence 011222 234455666677776643
No 134
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.21 E-value=2.8e-10 Score=127.88 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhccccCC---------CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccc
Q 003472 420 ELARDMGYTAARFGHVMF---------PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (817)
Q Consensus 420 ~V~~Ai~~q~~~~~~~~~---------~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G 490 (817)
.+.+|+.+++++++.... ....++...++.+.|+++.+ .+.+.++++|++|+..++.... ..
T Consensus 19 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g---~~~~~i~~g~~~a~~~~~~~l~-----~~- 89 (370)
T TIGR02539 19 VLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG---MDEARVTHGAREGKFAVMHALC-----KE- 89 (370)
T ss_pred CCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC---CCceEEECChHHHHHHHHHHhh-----CC-
Confidence 455666666666654221 11224567788888999988 4678889999999999887661 11
Q ss_pred ccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC--chh
Q 003472 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP--EWL 568 (817)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P--~~~ 568 (817)
..+|++ +..-|.+.+.++...|.... .++.. ..+
T Consensus 90 ---------------gd~Vl~-~~~~h~s~~~~~~~~g~~~~----------------------------~~~~~~~~~~ 125 (370)
T TIGR02539 90 ---------------GDWVVL-DGLAHYTSYVAAERAGLNVK----------------------------EVPHTGHPEY 125 (370)
T ss_pred ---------------CCEEEE-CCcccHHHHHHHHHcCCEEE----------------------------EEecCCcccC
Confidence 124544 44455444444333332110 01100 000
Q ss_pred hhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003472 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (817)
Q Consensus 569 ~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~ 648 (817)
-.| .+.+++.+++.. .....+..+|+++-+ .+.-|.+.+ +++|.+
T Consensus 126 -----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~~~~p-~~~~G~~~~----l~~i~~ 170 (370)
T TIGR02539 126 -----------KVD------------------PEGYGEVIEEVE-DESGKPPVLALLTHV-DGEYGNLPD----AGKVAK 170 (370)
T ss_pred -----------CcC------------------HHHHHHHHHHhh-hccCCCcEEEEEECC-CCCCccccC----HHHHHH
Confidence 011 244555554210 001124556776654 566788776 899999
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcCC
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~ 714 (817)
+|++||+++|+||+|. +|..+.-. ....+|++ +++|++++| .++|.+++++++++.+...
T Consensus 171 la~~~~~~livDea~~-~g~~~~~~----~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~ 232 (370)
T TIGR02539 171 VCREKGVPLLLNCAYT-VGRMPVSA----KEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRK 232 (370)
T ss_pred HHHHcCCeEEEECccc-cCCcCCCH----HHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhccc
Confidence 9999999999999995 55433221 12246865 899999976 6899999999999988653
No 135
>PLN02721 threonine aldolase
Probab=99.19 E-value=2.8e-09 Score=118.04 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=126.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++|+.++.+. .. +|.+.+|+++. +..... .+..+...+|.+.|+++++. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~~-~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----KP-TDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----CC-CHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 67888886665 35 89999998764 111111 12356678999999999983 568899999999988877
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc-c-cccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~-g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
... ... ...|+..+.+|..... + .....|..
T Consensus 74 ~~~----~~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~--------------------------- 106 (353)
T PLN02721 74 VHC----DVR----------------GSEVILGDNSHIHLYENGGISTLGGVH--------------------------- 106 (353)
T ss_pred HHc----cCC----------------CCeEEEcCccceehhcccchhhhcCce---------------------------
Confidence 651 101 1356666655422111 0 00111100
Q ss_pred cceeecCCchhhhcccccccccc-cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003472 558 SKWILSLPEWLYSKIVEHKDITF-CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~-~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~ 636 (817)
+..++.... + .| .+.+++.+++.. ..+..+..+|+++++ +...|-.
T Consensus 107 -~~~v~~~~~------------~~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~ 153 (353)
T PLN02721 107 -PRTVKNNED------------GTMD------------------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGR 153 (353)
T ss_pred -eEecCCCcC------------CCcC------------------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCc
Confidence 000110000 0 01 245666665310 012246789999997 6664444
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc--eeecccccCCCCCcceE-EEechHHHhhh
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSF 711 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivtlgK~LggGy~PlsA-vl~s~~i~d~~ 711 (817)
..+.+.+++|.++|++||+++|+||++. ++-..... .........| +++++|++++ |+|+ +++++++++.+
T Consensus 154 ~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~ 228 (353)
T PLN02721 154 CLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKA 228 (353)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhH
Confidence 5589999999999999999999999984 43211000 0011111234 4588999973 5565 56788887765
No 136
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-10 Score=125.58 Aligned_cols=320 Identities=15% Similarity=0.092 Sum_probs=202.4
Q ss_pred CCeEEEEeecCceeEEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccC--C--CCCCChHHHHHH
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--F--PENVYEPALECA 449 (817)
Q Consensus 374 ~~p~vi~~~~G~~~~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~--~--~~~~~~~~~eLa 449 (817)
..+.++++.-+++. ..||+ .+++|.| ++.||...++++.+.+...+.+|+... . .-++-+.+.+|+
T Consensus 76 ~~~~v~e~~~~~~~---~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE 145 (467)
T KOG1358|consen 76 LNTPVLESVMLPHV---TIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLE 145 (467)
T ss_pred cCCcccccccCCce---EecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccH
Confidence 44567777777763 34899 9999998 788898779999999999999997543 1 123578899999
Q ss_pred HHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCC
Q 003472 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (817)
Q Consensus 450 e~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~ 529 (817)
++|+.++| .+..+..+-|..+++.++..- ..|.+||..+..-+=...-++.++..
T Consensus 146 ~~iakF~G---~E~aivYs~gF~ti~S~ipaf----------------------sKrGDIi~~de~~nfaIq~GlqlSRS 200 (467)
T KOG1358|consen 146 KRIAKFMG---TEDAIVYSYGFSTIESAIPAF----------------------SKRGDIIFVDEAVNFAIQKGLQLSRS 200 (467)
T ss_pred HHHHHhhC---Ccceeeeccccchhhhcchhh----------------------hccCcEEEEehhhhHHHHHHHhhhhh
Confidence 99999998 467777788889999888754 23457888877666433334444421
Q ss_pred CCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHh
Q 003472 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (817)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~ 609 (817)
.. .+| -|||+ +.+|+.+.
T Consensus 201 ~i--------------~~F------------------------------khndm------------------~~lerll~ 218 (467)
T KOG1358|consen 201 TI--------------SYF------------------------------KHNDM------------------EDLERLLP 218 (467)
T ss_pred ee--------------EEe------------------------------cCCCH------------------HHHHHhcc
Confidence 10 000 15665 33444433
Q ss_pred cCCC-C-CCCC---cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCC
Q 003472 610 QNPG-L-KVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVP 682 (817)
Q Consensus 610 ~~~~-~-~~~~---~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~P 682 (817)
+... . +.+. ...-+++|.+ ....|.+.| +++|.++..+|..-+|+||..+ ||-.|+ .+..+|+|+.+
T Consensus 219 E~~~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~ 292 (467)
T KOG1358|consen 219 EQEDEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPI 292 (467)
T ss_pred CcchhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCc
Confidence 2110 0 1122 2457899998 777788888 9999999999999999999985 666666 66889999864
Q ss_pred ---ceeec--ccccC--CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHH
Q 003472 683 ---DIACY--GKLLT--GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIP 754 (817)
Q Consensus 683 ---Divtl--gK~Lg--gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~ 754 (817)
|+++. .-+|+ ||+ ++++.-+.+.=.-. ...+-++-+-.|+...||..+++++++ ++..+.++.
T Consensus 293 ~~iDiv~~sm~~alas~GgF-----c~G~~~i~~hQrLS----g~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~ 363 (467)
T KOG1358|consen 293 TDIDIVTASMETALASGGGF-----CAGKSFIADHQRLS----GSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRA 363 (467)
T ss_pred cceeeeeecccccccccCce-----eecceeeEeeeecc----ccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhc
Confidence 56643 33443 443 55555444322111 112223344578999999999999975 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeee--eEEEEEEecCCCCCCc----chHHHHHHHHHHcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALG--TLCAIELQAAGCNAGY----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~G--lm~gIel~~~~~~~~~----~~~~~~~~~~l~~Gv~ 816 (817)
.+..+...|. ... --.|.|.- -++.+.+.+. .... ...+.++.+|+.+|++
T Consensus 364 k~~~~H~~l~--------~~s-~~~v~~~~~SPi~hl~l~~~--~~s~e~e~~lL~eivd~~i~~~~l 420 (467)
T KOG1358|consen 364 KVAKFHAALS--------SNS-GFIVSGSPESPIIHLQLERS--YGSREKEEKLLEEIVDKCIAEGVL 420 (467)
T ss_pred cccccchhhh--------cCC-ceEEecCcCCceeeeeeccc--ccchHHHHHHHHHHHHHHHhhcce
Confidence 5555443221 111 01233322 2344444442 1221 3556677777777654
No 137
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.14 E-value=4.5e-09 Score=116.26 Aligned_cols=292 Identities=14% Similarity=0.089 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCc-ceEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~-~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~ 496 (817)
.|.|.+++... ..+.. ....+...++.++|+++++.+.- ..++++.+|++|++.++....
T Consensus 11 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-------------- 71 (355)
T TIGR03301 11 SATVRDAMLVD---WCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-------------- 71 (355)
T ss_pred CHHHHHHhhhh---ccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------------
Confidence 56666666652 12211 11236677888999998774311 257789999999999998772
Q ss_pred CCCccccccceEEEEEcCCccCCcccccc-ccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 497 ~~~~~~~~~r~~II~~~gsyHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
..+.++|....+++|......+ ..|.+ +..++.+...
T Consensus 72 -------~~~~~vi~~~~~~~~~~~~~~a~~~g~~----------------------------~~~i~~~~~~------- 109 (355)
T TIGR03301 72 -------PRDGKLLVLINGAYGERLAKICEYLGIP----------------------------HTDLNFSEYE------- 109 (355)
T ss_pred -------CCCCeEEEECCCchhhHHHHHHHHcCCc----------------------------eEEEecCCCC-------
Confidence 1124677777777765321111 11110 0111111000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
..| .+.+++.+.+ ++ ++..+ ++-+ ....|.+.+ +++|.++|++||
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~~-~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~ 155 (355)
T TIGR03301 110 ----PPD------------------LNRIEEALAA-----DP-DITHVATVHH--ETTTGILNP----LEAIAKVARSHG 155 (355)
T ss_pred ----CCC------------------HHHHHHHHHh-----CC-CceEEEEEec--CCcccchhH----HHHHHHHHHHcC
Confidence 011 2556666653 12 33333 3323 344577765 899999999999
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCce--eecccccCCCCCcceEEEechHHHhhhcCCCccceee-----------
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALL----------- 721 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~----------- 721 (817)
+++|+|++++ +|.. .+....+ ..|+ .+++|.++|+ .-+|.+++++++++.+........+-
T Consensus 156 ~~livD~~~s-~g~~--~~~~~~~--~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T TIGR03301 156 AVLIVDAMSS-FGAI--PIDIEEL--DVDALIASANKCLEGV-PGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKT 229 (355)
T ss_pred CEEEEEeccc-cCCc--ccchhhc--CccEEEecCCcccccC-CceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhc
Confidence 9999999985 6532 2323333 3555 4889998764 22588999999988775321100000
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc-eEEeeeeEEEEEEecCCCCCCc
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ-RVVALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~-~VrG~Glm~gIel~~~~~~~~~ 800 (817)
-...|+.++.++.++.++|+.+.+++..++..++.+...+++.+.+.+. ....+. +.+..|+++.+.+.... .
T Consensus 230 ~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~~----~ 303 (355)
T TIGR03301 230 GKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL--GFQPLLPERWQSPIIVSFLYPDDP----D 303 (355)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc--CCeeecCCCCCCCcEEEEECCCCC----c
Confidence 0124566788888888999988664433444444455555555443321 122222 22345667777775421 0
Q ss_pred chHHHHHHHHHHcCCC
Q 003472 801 CLIELFLYNFLTTGMH 816 (817)
Q Consensus 801 ~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||.
T Consensus 304 ~~~~~~~~~l~~~gi~ 319 (355)
T TIGR03301 304 FDFDDFYQELKERGFV 319 (355)
T ss_pred chHHHHHHHHHHCCEE
Confidence 1335677888888874
No 138
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.13 E-value=7.3e-09 Score=116.33 Aligned_cols=293 Identities=13% Similarity=0.068 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~ 495 (817)
.+.+.+++++.+.... .+....+..+....+++.+.+..+.. .-+.++++++|++|+..+++... .
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~-------- 106 (382)
T PRK06108 39 PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----G-------- 106 (382)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----C--------
Confidence 6889999888776532 12212234566777888887654411 12579999999999998888661 1
Q ss_pred cCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 496 ~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
+ ...|+..+-+|.+-. ......|.. .+.+|...
T Consensus 107 --------~-gd~vl~~~p~y~~~~-~~~~~~g~~------------------------------~~~v~~~~------- 139 (382)
T PRK06108 107 --------P-GDEVVAVTPLWPNLV-AAPKILGAR------------------------------VVCVPLDF------- 139 (382)
T ss_pred --------C-CCEEEEeCCCccchH-HHHHHCCCE------------------------------EEEeeCCC-------
Confidence 1 135666666664321 111111110 01111000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
.+ .-|. -| .+.+++.+. .++.++++... +.-.|.+. +.+.+++|.++|+++|+
T Consensus 140 -----~~--~~~~--~d--------~~~l~~~~~--------~~~~~i~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~ 192 (382)
T PRK06108 140 -----GG--GGWT--LD--------LDRLLAAIT--------PRTRALFINSP-NNPTGWTA-SRDDLRAILAHCRRHGL 192 (382)
T ss_pred -----CC--CCcc--CC--------HHHHHHhcC--------ccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCc
Confidence 00 0000 00 144555543 13445555443 55567665 78999999999999999
Q ss_pred cEEEeeeeeccccc-cccchhhhcCC---CCc-e--eecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCC
Q 003472 656 PVIFDEVFTGFWRL-GVETTADLLGC---VPD-I--ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYS 727 (817)
Q Consensus 656 lLI~DEV~TGfGRt-G~~~a~e~~gv---~PD-i--vtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~ 727 (817)
++|+||++.+|... +... ....++ .+. + .+++|.+| .| +.+|.+++++++.+.+... ....+++
T Consensus 193 ~li~De~y~~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~------~~~~~~~ 264 (382)
T PRK06108 193 WIVADEVYERLYYAPGGRA-PSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKL------IEYNTSC 264 (382)
T ss_pred EEEEehhhhhhccCCCCCC-CCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHH------HHhcccC
Confidence 99999999877332 1111 111122 122 2 28999987 57 7999999999998877421 1234566
Q ss_pred CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHH
Q 003472 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELF 806 (817)
Q Consensus 728 gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~ 806 (817)
.+++..+++.++|+.- ++..+++.++.+...++ +.+.+++.+.+.-+... |+++-+++... .....+
T Consensus 265 ~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------~~~~~~ 332 (382)
T PRK06108 265 VAQFVQRAAVAALDEG--EDFVAELVARLRRSRDH----LVDALRALPGVEVAKPDGAMYAFFRIPGV------TDSLAL 332 (382)
T ss_pred CChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH----HHHHHHhCCCCcccCCCeeEEEEEeCCCC------CCHHHH
Confidence 7888888888777532 22233444444444443 33444444433323333 55556666533 123456
Q ss_pred HHHHHH-cCCC
Q 003472 807 LYNFLT-TGMH 816 (817)
Q Consensus 807 ~~~~l~-~Gv~ 816 (817)
...+++ +||+
T Consensus 333 ~~~ll~~~gV~ 343 (382)
T PRK06108 333 AKRLVDEAGLG 343 (382)
T ss_pred HHHHHHhCCEE
Confidence 666654 5763
No 139
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.12 E-value=8.9e-09 Score=115.16 Aligned_cols=293 Identities=11% Similarity=0.088 Sum_probs=165.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+++||.++. ..+| . +|.+.+++.+.+..+..+. .....+|.+.++++.+-. .+.++++++.+++...++.
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLG-P-SPKAIEAIRAAADELHRYP-----DGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhcCCC-----CCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 789998842 3456 3 6889999998876543221 112346777777776532 2568888877777766555
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.. .+ . ...|+..+-+|.+....+ ...|.. +
T Consensus 103 ~l----~~-~----------------gd~vl~~~p~y~~~~~~~-~~~g~~----------------------------~ 132 (367)
T PRK02731 103 AY----LG-P----------------GDEVIYSEHGFAVYPIAA-QAVGAK----------------------------P 132 (367)
T ss_pred Hh----cC-C----------------CCEEEEecCCHHHHHHHH-HHcCCe----------------------------E
Confidence 43 11 1 135777666665422111 111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++.. .+ ..| .+.+++.+. ++..+|++.-. +.-.|.+.+
T Consensus 133 ~~~~~~-~~-----------~~~------------------~~~l~~~~~--------~~~~~v~l~~p-~nptG~~~~- 172 (367)
T PRK02731 133 VEVPAK-DY-----------GHD------------------LDAMLAAVT--------PRTRLVFIANP-NNPTGTYLP- 172 (367)
T ss_pred EEeccc-CC-----------CCC------------------HHHHHHHhC--------CCCcEEEEeCC-CCCCCcCCC-
Confidence 011110 00 001 144555553 12344544443 566787775
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-++++.+.|+ +|+++|+||++..+...+. .......+..++++ +++|.+| .| +.+|.+++++++.+.+...
T Consensus 173 ~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~ 250 (367)
T PRK02731 173 AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRV 250 (367)
T ss_pred HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHc
Confidence 334444444443 4999999999876644332 22333344445655 8899997 68 7999999999998887532
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
..+|..++++.+++.+.|+ +++..+++.+..+...+ .+.+.+++++.. -+...|.++.+++.+.
T Consensus 251 --------~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~----~l~~~L~~~g~~-~~~~~g~~~~i~~~~~ 314 (367)
T PRK02731 251 --------RQPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMA----WLTEFLAELGLE-YIPSVGNFILVDFDDG 314 (367)
T ss_pred --------cCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHHHHCCCc-cCCCCceEEEEECCCC
Confidence 1345667888877766663 32333333333333333 344445544421 2234588888887332
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||+
T Consensus 315 ------~~~~~~~~~L~~~gI~ 330 (367)
T PRK02731 315 ------KDAAEAYQALLKRGVI 330 (367)
T ss_pred ------CCHHHHHHHHHHCCEE
Confidence 2356677788888874
No 140
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.11 E-value=5.2e-09 Score=115.91 Aligned_cols=258 Identities=14% Similarity=0.114 Sum_probs=147.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
.+...++++.|+++++. +.+++++||++|++.+++.. +. .. ..+|+....+||+...
T Consensus 17 ~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~~---~~----------------gd~vl~~~~~~~~~~~ 73 (352)
T cd00616 17 GPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-GI---GP----------------GDEVIVPSFTFVATAN 73 (352)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-CC---CC----------------CCEEEeCCcchHHHHH
Confidence 56788999999999983 57899999999999999876 11 11 2368888888886432
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
++...|.. +..++.+. .+ ..|
T Consensus 74 -~~~~~g~~----------------------------~~~~~~~~~~~-----------~~d------------------ 95 (352)
T cd00616 74 -AILLLGAT----------------------------PVFVDIDPDTY-----------NID------------------ 95 (352)
T ss_pred -HHHHcCCe----------------------------EEEEecCCCcC-----------CcC------------------
Confidence 22211110 00111100 00 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. .++++|++..+ . |...+ +++|+++|+++|+++|+|++|+ +|... .....|.
T Consensus 96 ~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~---~~~~~~~ 155 (352)
T cd00616 96 PELIEAAIT--------PRTKAIIPVHL-Y---GNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATY---KGRKVGT 155 (352)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-C---CCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeE---CCEEccc
Confidence 144555543 24567776664 3 44443 8999999999999999999996 44332 1122344
Q ss_pred CCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCcc------ceeecccCCCCCHHHHHHHHHHHHHhcCc
Q 003472 681 VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------KALLHGHSYSAHALGCAAAAKSIKWFKDP 746 (817)
Q Consensus 681 ~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~------~~~~h~~T~~gnPla~AAAlA~L~~l~~~ 746 (817)
..|+.+++ |.+++| ..|+++++ +++.+.+.. .... .....+.++..+++.++.++..++.+++
T Consensus 156 ~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~- 232 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDE- 232 (352)
T ss_pred CcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHH-
Confidence 46888776 999655 35666665 466554321 1100 0112345667789999999887776632
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHHHHcCCC---cceE---EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 747 QTNHNIIPERRILRELWDLELIQQISSHRT---VQRV---VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 747 ~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~---V~~V---rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.++.+.+.+++.+.| ++.|. +... .....++.|.+... .......+...+.++||.
T Consensus 233 -----~~~~~~~~~~~~~~~L----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~L~~~gI~ 295 (352)
T cd00616 233 -----IIARRREIAERYKELL----ADLPGIRLPDVPPGVKHSYHLYVIRLDPE----AGESRDELIEALKEAGIE 295 (352)
T ss_pred -----HHHHHHHHHHHHHHHh----cCCCCccCCCCCCCCceeeEEEEEEECCc----CCCCHHHHHHHHHHCCCC
Confidence 3333344444444333 33222 2111 12445666666431 013455677777778873
No 141
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.09 E-value=4.9e-09 Score=116.23 Aligned_cols=291 Identities=12% Similarity=0.078 Sum_probs=162.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
+.|||++|.- .++. +|++++|+++++.....+. .+...+|.+.++++++-. .+.+.+++++++++..+++
T Consensus 20 ~~i~l~~~~~--~~~~--~~~~~~a~~~~~~~~~~y~-----~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNEN--PFGP--PPKAKEALRAEADKLHRYP-----DPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCCC--CCCC--CHHHHHHHHHhHHHhhcCC-----CCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 7899987432 3443 7999999998875432221 122356777888776622 3578999999999988877
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... .. ..+|+..+.+|.... ......|.. +
T Consensus 90 ~l~-----~~----------------gd~v~~~~p~y~~~~-~~~~~~g~~----------------------------~ 119 (346)
T TIGR01141 90 AFL-----EP----------------GDAVLVPPPTYSMYE-ISAKIHGAE----------------------------V 119 (346)
T ss_pred Hhc-----CC----------------CCEEEEcCCCHHHHH-HHHHHcCCe----------------------------E
Confidence 651 11 136777766663211 111111100 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++..... ..| .+.+++.+. .++.+|++... ....|.+.+
T Consensus 120 ~~~~~~~~~-----------~~d------------------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 120 VKVPLDEDG-----------QLD------------------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred EEeccCCCC-----------CCC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 001100000 011 134444332 24556666644 566788775
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~ 715 (817)
.+.++++.+.|+ +|+++|+||++..+...+... ......++++ +++|.+| .| +.+|.+++++++.+.+...
T Consensus 161 ~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~- 235 (346)
T TIGR01141 161 RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNKV- 235 (346)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHhc-
Confidence 334444444444 499999999998774322211 1222234544 7899996 47 6889999999998887532
Q ss_pred ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCC
Q 003472 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (817)
Q Consensus 716 ~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~ 795 (817)
..+++.++++++++.+.++.. +..++..+..+...+ .+.+.++++|.+.-+...|.++.+++..
T Consensus 236 -------~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~----~l~~~L~~~~g~~~~~~~g~~~~~~~~~-- 299 (346)
T TIGR01141 236 -------RAPFNLSRLAQAAAIAALRDD---DFIEKTVEEINAERE----RLYDGLKKLPGLEVYPSDANFVLIRFPR-- 299 (346)
T ss_pred -------cCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH----HHHHHHHhcCCCEECCCcCCEEEEecCC--
Confidence 235667888888877766432 112233333333333 3344444554333223357788887753
Q ss_pred CCCCcchHHHHHHHHHHcCCC
Q 003472 796 CNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...+.++||+
T Consensus 300 ------~~~~~~~~L~~~gI~ 314 (346)
T TIGR01141 300 ------DADALFEALLEKGII 314 (346)
T ss_pred ------CHHHHHHHHHHCCeE
Confidence 235577778888864
No 142
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.09 E-value=1.5e-08 Score=117.00 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh----h
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e----~ 677 (817)
+.|++.+.+ .+++++++|+++.. ..-.|-.+.+.+.+++|+++|++||+++|.|+++..- +.+|..+ +
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e---~a~f~~~~e~g~ 235 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAE---NAYFIKQREPGY 235 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhh---hhhhhhhccccc
Confidence 567777763 23457888998865 4443434557899999999999999999999988420 1111110 0
Q ss_pred cC-----------CCCceeecccccCCCCCcceEEEec--hHHHhhhcCCCccceeeccc-CCCCCHHHHHHHHHH-H-H
Q 003472 678 LG-----------CVPDIACYGKLLTGGVIPLAATLAT--NAVFDSFVGDSKLKALLHGH-SYSAHALGCAAAAKS-I-K 741 (817)
Q Consensus 678 ~g-----------v~PDivtlgK~LggGy~PlsAvl~s--~~i~d~~~~~~~~~~~~h~~-T~~gnPla~AAAlA~-L-~ 741 (817)
.+ =-.|+++++ +--.|+.|.|++++. +++++.+... ..+.+++ ||+|++..|.+|+++ | +
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e 311 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYE 311 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHH
Confidence 01 125777665 222355676666663 4666665321 1223555 999988887777774 4 4
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEE
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIEL 791 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel 791 (817)
.+++ +..+...++.+++.+ .|.+ ...|.+....| .++-+++
T Consensus 312 ~~~~-~~~~~~~~~~~~l~~----~L~~--~G~~~~~p~Gg--~~v~~d~ 352 (460)
T PRK13238 312 GMDE-DYLAYRIGQVEYLGE----GLEE--AGVPIQTPAGG--HAVFVDA 352 (460)
T ss_pred hhCh-HHHHHHHHHHHHHHH----HHHH--CCCCeEccCCc--eEEEEEc
Confidence 4443 333333333333333 3322 25666665555 4444444
No 143
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.09 E-value=8e-09 Score=115.27 Aligned_cols=291 Identities=8% Similarity=0.006 Sum_probs=164.5
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+.++.. .+|. +|.+.+|+.++++.+.+.. ..-..+|.+.++++.+-. .+.+++++++++|...+++
T Consensus 30 ~~i~l~~n~~--~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNEN--PYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCCC--CCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 5788877432 3553 7999999998887654332 122345566666655422 3579999999999887766
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . . ...|+..+-+|++....+ ...|.. +
T Consensus 100 ~~~----~-~----------------gd~v~~~~p~y~~~~~~~-~~~g~~----------------------------~ 129 (359)
T PRK03158 100 ALL----N-P----------------GTNTVMAEPTFSQYRHNA-IIEGAE----------------------------V 129 (359)
T ss_pred HHh----C-C----------------CCEEEEcCCCHHHHHHHH-HHcCCe----------------------------E
Confidence 541 1 1 236888888888632111 111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++... . -.| .+.+++.+. .++.++++... +.-.|.+.+
T Consensus 130 ~~~~~~~-~-----------~~d------------------~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~- 169 (359)
T PRK03158 130 REVPLKD-G-----------GHD------------------LEAMLKAID--------EQTKIVWICNP-NNPTGTYVN- 169 (359)
T ss_pred EEEecCC-C-----------CcC------------------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 1111100 0 000 134444443 13445555543 777888886
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCC-Ccee--ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCV-PDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~-PDiv--tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-+.++.+.|+ +|+++|+||++..|-.-+. .......+-. ..++ +|||.+| .| +.+|.+++++++++.+...
T Consensus 170 ~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 170 HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIA 247 (359)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHHHh
Confidence 333444444442 6999999999965521111 1111111111 2343 8999998 68 8999999999999887531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
..++..++++.+++.++|+ +.+..+++.+..+... +.+.+.+++++ +.-+...|.++.+++..
T Consensus 248 --------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~g~~i~~~~~~- 310 (359)
T PRK03158 248 --------RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGL----EQYYAFCKEYG-LFYYPSQTNFIFVDTGR- 310 (359)
T ss_pred --------cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHH----HHHHHHHHHCC-CeeCCCcCcEEEEECCC-
Confidence 2357789999999888874 3222333333222222 23444555553 32345567887777632
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...++++||+
T Consensus 311 -------~~~~~~~~l~~~gv~ 325 (359)
T PRK03158 311 -------DANELFEALLKKGYI 325 (359)
T ss_pred -------CHHHHHHHHHHCCeE
Confidence 235577777888874
No 144
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.08 E-value=2.7e-09 Score=117.42 Aligned_cols=233 Identities=13% Similarity=0.017 Sum_probs=137.4
Q ss_pred eccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHH
Q 003472 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (817)
Q Consensus 403 D~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~ 482 (817)
||+| .+++| . +|.+.+|+.+.+.... . .+..+...++.+.++++.+. +.++++++|++|+..+++..+
T Consensus 1 ~~~~---~~~~~-~-~~~v~~a~~~~~~~~~--~--~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRS---DTVTG-P-TPEMLEAMAAANVGDD--V--YGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Cccc---ccCCC-C-CHHHHHHHHhcccCCc--c--cCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhc
Confidence 4555 56677 4 7999999987653221 1 12356688999999998872 578899999999999888661
Q ss_pred HHhhccccccccccCCCccccccceEEEEEcCCccCCccccc---cccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 483 RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM---EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 483 r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gal---slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
.. ...|+ ....+|.....+. .+.|...
T Consensus 69 -----~~----------------gd~v~-~~~~~~~~~~~~~~~~~~~g~~~---------------------------- 98 (338)
T cd06502 69 -----QP----------------GGSVI-CHETAHIYTDEAGAPEFLSGVKL---------------------------- 98 (338)
T ss_pred -----CC----------------CCeEE-EecCcceeeecCCcHHHHcCceE----------------------------
Confidence 11 12444 5556665432211 1111100
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++... + ..| .+.+++.+.+.. ..+..+..+|+++.. ...||.. +
T Consensus 99 ~~v~~~~-~-----------~~d------------------~~~l~~~i~~~~-~~~~~~~~~v~l~~p-~n~g~~~--~ 144 (338)
T cd06502 99 LPVPGEN-G-----------KLT------------------PEDLEAAIRPRD-DIHFPPPSLVSLENT-TEGGTVY--P 144 (338)
T ss_pred EeecCCC-C-----------cCC------------------HHHHHHHhhccC-CCcCCcceEEEEEee-cCCcccc--C
Confidence 0111000 0 011 145666665310 011135667777764 4555543 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeecccc---ccccchhhhcCCCCcee--ecccccCCCCCcceE-EEechHHHhhhcC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFVG 713 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGR---tG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsA-vl~s~~i~d~~~~ 713 (817)
...+++|.++|+++|+++|+||++. ++- .|. ....+...+|++ +++|.+|. |.++ +++++++++.+..
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~~ 218 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGARL-ANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARARR 218 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechHHH-HHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHHH
Confidence 8899999999999999999999873 111 121 122223356766 77888863 3344 4578888887743
Q ss_pred CCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 714 DSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 714 ~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.. ..+++++..+++.++++.++|+
T Consensus 219 ~~----~~~~~~~~~~~~~~~a~~~~L~ 242 (338)
T cd06502 219 RR----KQAGGGMRQSGFLAAAGLAALE 242 (338)
T ss_pred HH----HHhCCChhhHHHHHHHHHHHhc
Confidence 11 1234566677888888877775
No 145
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.06 E-value=1.8e-08 Score=113.25 Aligned_cols=167 Identities=12% Similarity=0.197 Sum_probs=107.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++..|. .-. |.+. +.+-++++.++|++ |+++|+||+...|+..|...... ...|+++ +|||.+| .| +.
T Consensus 159 i~l~~P~-NPt-G~~~-~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lR 231 (369)
T PRK08153 159 VYLANPD-NPM-GSWH-PAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-AR 231 (369)
T ss_pred EEEeCCC-CCC-CCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hh
Confidence 3455785 444 6655 56667777777774 99999999998776544321111 1234543 8999998 78 89
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+... ..+++.++++.+++.++|+ +++..+++.+..+...+ .+.+.+++++.
T Consensus 232 iG~~v~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~----~~~~~L~~~g~- 295 (369)
T PRK08153 232 VGYAIGAPGTIKAFDKV--------RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARD----RIAAIARANGL- 295 (369)
T ss_pred eeeeecCHHHHHHHHHh--------hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH----HHHHHHHHCCC-
Confidence 99999999999887532 2357789999999988884 33333444444444333 44445555443
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
..+...|.++-+++..+. +....+...++++||.
T Consensus 296 ~~~p~~~~f~~~~~~~~~-----~~a~~l~~~l~~~Gi~ 329 (369)
T PRK08153 296 TPLPSATNFVAIDCGRDG-----AFARAVLDGLIARDIF 329 (369)
T ss_pred ccCCCcCcEEEEECCCCc-----ccHHHHHHHHHHCCeE
Confidence 122345667666654221 4567888889999974
No 146
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.06 E-value=9.9e-09 Score=118.91 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.|++.+++. .+ + .||+ |.+ .++.+ + +++|+++|+++|++|++|++| ++|-.|..+....++
T Consensus 173 d~Le~~l~~~----~p-k--lIv~~~S~-~s~~~---D----~a~i~~ia~~~ga~LlvD~AH-~~Gli~~~~~~~p~~- 235 (475)
T PLN03226 173 DKLEKKAMLF----RP-K--LIIAGASA-YPRDW---D----YARMRKIADKVGALLMCDMAH-ISGLVAAQEAASPFE- 235 (475)
T ss_pred HHHHHHHhhc----CC-e--EEEEecCc-CCCcc---C----HHHHHHHHHHcCCEEEEEchh-hhCcccCCCCCCCCC-
Confidence 5677777531 12 2 3444 776 44433 3 679999999999999999999 466666543222233
Q ss_pred CCcee--ecccccCCCCCcceEEEechHHH-----------hh--hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLATNAVF-----------DS--FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s~~i~-----------d~--~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
..|++ |+.|+|.|- .-|.+++++++. +. ..+.. .+.+++.+-++..+++..++|+.+.+
T Consensus 236 ~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a----~~~~~~g~p~~~~iaal~aAl~~i~~ 309 (475)
T PLN03226 236 YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFA----VFPGLQGGPHNHTIAALAVALKQAMT 309 (475)
T ss_pred CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhccc----cCCccCCCchHHHHHHHHHHHHHHhC
Confidence 47877 678999652 124566677544 22 11111 12334445578888888899999976
Q ss_pred cCc---hhcHHHHHHHHHH
Q 003472 746 PQT---NHNIIPERRILRE 761 (817)
Q Consensus 746 ~~l---~~~l~~~~~~lg~ 761 (817)
+++ .+++.++++.+.+
T Consensus 310 ~~~~~~~~~~~~na~~L~~ 328 (475)
T PLN03226 310 PEFKAYQKQVKANAAALAN 328 (475)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 543 4555555555554
No 147
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.04 E-value=2.9e-08 Score=111.09 Aligned_cols=300 Identities=8% Similarity=0.027 Sum_probs=165.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCC------CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 412 GPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
..|-- .+.+.+|+.+.+..+........ ......++.+.++++++....+.+++++|+++|+..+++.+. .
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~-~- 83 (373)
T cd06453 7 ATSQK-PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG-R- 83 (373)
T ss_pred cccCC-CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh-h-
Confidence 35666 78999999888755432110001 123345677788888774212479999999999999998772 1
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
.. ....+|++.+.+|-+ ......... .. .|. .+..++..
T Consensus 84 -~~---------------~~g~~vl~~~~~~~~-~~~~~~~~~-~~------------~g~-----------~~~~v~~~ 122 (373)
T cd06453 84 -AN---------------KPGDEIVTSVMEHHS-NIVPWQQLA-ER------------TGA-----------KLKVVPVD 122 (373)
T ss_pred -cC---------------CCCCEEEECcchhHH-HHHHHHHHH-hh------------cCc-----------EEEEeecC
Confidence 00 012356665544332 211100000 00 000 00111111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
... ..| .+.+++.+. +++.+|++.-+ ....|.+.+ +++
T Consensus 123 ~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~ 160 (373)
T cd06453 123 DDG-----------QLD------------------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKE 160 (373)
T ss_pred CCC-----------CcC------------------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHH
Confidence 000 000 245666654 14567776654 566777776 799
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCcc----ce
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL----KA 719 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~----~~ 719 (817)
|.++|+++|+++|+|++++ +|... + ......+|+++++ |.+++ .-+|.+++++++.+.+...... ..
T Consensus 161 i~~~~~~~~~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~ 233 (373)
T cd06453 161 IGEIAHEAGVPVLVDGAQS-AGHMP--V--DVQDLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEE 233 (373)
T ss_pred HHHHHHHcCCEEEEEhhhh-cCcee--e--eccccCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecCCCcccc
Confidence 9999999999999999995 44331 1 1112457999888 99876 3468888999988766431100 00
Q ss_pred -eecccC-------C---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC---cceEEeeee
Q 003472 720 -LLHGHS-------Y---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT---VQRVVALGT 785 (817)
Q Consensus 720 -~~h~~T-------~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~---V~~VrG~Gl 785 (817)
....++ | +.+..+..+..++++.+++.+. +++.++...+.+++.+ .+++.|. +.+....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~-~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~ 308 (373)
T cd06453 234 VSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM-EAIAAHEHELTAYALE----RLSEIPGVRVYGDAEDRAG 308 (373)
T ss_pred ccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHH----HHhcCCCeEEeCCccccCC
Confidence 000001 1 2344555566677888876544 4455555555554444 3444543 223334566
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 786 LCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 786 m~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.|.+... ....+...+.++||.
T Consensus 309 ~~~~~~~~~-------~~~~i~~~l~~~gi~ 332 (373)
T cd06453 309 VVSFNLEGI-------HPHDVATILDQYGIA 332 (373)
T ss_pred eEEEEECCc-------CHHHHHHHHHHCCEE
Confidence 777776421 345677777778874
No 148
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.04 E-value=1.6e-08 Score=112.44 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.+.+ .++.+|++-.. +...|.+.+ +++|.++|+++|+++|+|++|. +|.. .+....+ .
T Consensus 114 ~~l~~~i~~-------~~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~ 176 (356)
T cd06451 114 EEIAEALEQ-------HDIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--G 176 (356)
T ss_pred HHHHHHHhc-------cCCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--C
Confidence 456666652 23455655454 566788776 8899999999999999999994 6532 1222222 3
Q ss_pred Cceeec--ccccCCCCCcceEEEechHHHhhhcC-CCcccee---------ec---ccCCCCCHHHHHHHHHHHHHhcCc
Q 003472 682 PDIACY--GKLLTGGVIPLAATLATNAVFDSFVG-DSKLKAL---------LH---GHSYSAHALGCAAAAKSIKWFKDP 746 (817)
Q Consensus 682 PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~-~~~~~~~---------~h---~~T~~gnPla~AAAlA~L~~l~~~ 746 (817)
+|+++. .|.++++ ..+|.++++++.++.+.. ......+ .+ ..+.+.++...+++.++++.+.+.
T Consensus 177 ~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~ 255 (356)
T cd06451 177 VDVAYTGSQKALGAP-PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEE 255 (356)
T ss_pred ccEEEecCchhccCC-CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 577654 6999876 467889999998877642 0000000 00 122234577778888999888663
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHc-CC
Q 003472 747 QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTT-GM 815 (817)
Q Consensus 747 ~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~-Gv 815 (817)
+. +++.++...+.+++.+.|.+. ....+....+. +.+..+.+... .....+...+.++ ||
T Consensus 256 ~~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~~gI 317 (356)
T cd06451 256 GL-ENRWARHRRLAKALREGLEAL--GLKLLAKPELRSPTVTAVLVPEG------VDGDEVVRRLMKRYNI 317 (356)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHc--CCeeccCcccCCCceEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 32 344455555555555544332 22222222222 23333333221 2345677777777 76
No 149
>PRK07682 hypothetical protein; Validated
Probab=99.02 E-value=6.9e-08 Score=108.61 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+.+.+++.++++.. ..+....+..+...++++.+.+..+... . +.++++++|++|++.+++... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----- 104 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-----NP----- 104 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-----CC-----
Confidence 567888888877642 1121123445666778888876433211 1 369999999999998887661 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+..+-+|++.. ......|.. .++.|...
T Consensus 105 -----------gd~vl~~~p~y~~~~-~~~~~~g~~------------------------------~~~~~~~~------ 136 (378)
T PRK07682 105 -----------GDEVLIVEPSFVSYA-PLVTLAGGV------------------------------PVPVATTL------ 136 (378)
T ss_pred -----------CCEEEEeCCCchhhH-HHHHHcCCE------------------------------EEEeecCC------
Confidence 237888888888532 111121111 00111000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccCCHHHHHHHHHHHhhc
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~ 653 (817)
++ .+. -| .+.+++.+. +++.++ +.-| +.-.|.+. +.+.+++|.++|++|
T Consensus 137 ------~~---~~~--~d--------~~~l~~~~~--------~~~~~v~~~~p--~NPtG~~~-s~~~~~~l~~~~~~~ 186 (378)
T PRK07682 137 ------EN---EFK--VQ--------PAQIEAAIT--------AKTKAILLCSP--NNPTGAVL-NKSELEEIAVIVEKH 186 (378)
T ss_pred ------cc---CCC--CC--------HHHHHhhcC--------cccEEEEEECC--CCCcCcCc-CHHHHHHHHHHHHHc
Confidence 00 000 00 244555543 134455 4455 45566644 788999999999999
Q ss_pred CCcEEEeeeeeccccccccch-hhhcCCCCc---eeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCC
Q 003472 654 KIPVIFDEVFTGFWRLGVETT-ADLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSA 728 (817)
Q Consensus 654 GilLI~DEV~TGfGRtG~~~a-~e~~gv~PD---ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~g 728 (817)
|+++|+||++..|...+.... .+..+..+. +.++||.+| .| +.+|.+++++++++.+... ...++++.
T Consensus 187 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~------~~~~~~~~ 259 (378)
T PRK07682 187 DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKI------HQYSMMCA 259 (378)
T ss_pred CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHH------HHhhccCC
Confidence 999999999987755443221 122222222 348999998 68 7889999999999887531 11234556
Q ss_pred CHHHHHHHHHHHH
Q 003472 729 HALGCAAAAKSIK 741 (817)
Q Consensus 729 nPla~AAAlA~L~ 741 (817)
++++.+++.++|+
T Consensus 260 ~~~~q~a~~~~l~ 272 (378)
T PRK07682 260 PTMAQFAALEALR 272 (378)
T ss_pred CHHHHHHHHHHHh
Confidence 7787777777764
No 150
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.02 E-value=4.1e-09 Score=119.20 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=100.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||+++ .+-.+... .+ ..|++ +++|.++| |
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~--g~Div~~S~sK~l~g~g- 213 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---EL--GCDAVVHSATKYIGGHG- 213 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hc--CCcEEEecCcceecCCC-
Confidence 4568888876 666777776 8999999999999999999984 22222211 12 34777 55699987 5
Q ss_pred Ccc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.++ |+++++++.++.+..... ...+.+ -+|..+++++..|+.+.. ..++..+++.. +.+.++++
T Consensus 214 ~~~gG~v~~~~~~i~~~~~~~~---~~~g~~--~~~~~a~l~~~~L~tl~~--r~~~~~~~a~~--------la~~L~~~ 278 (386)
T PRK06767 214 DVVAGVTICKTRALAEKIRPMR---KDIGGI--MAPFDAWLLLRGLKTLAV--RMDRHCDNAEK--------IVSFLKNH 278 (386)
T ss_pred CceeEEEEeChHHHHHHHHHHH---HHhCCC--CCHHHHHHHHcCCCcHHH--HHHHHHHHHHH--------HHHHHHcC
Confidence 565 677888876665421100 011221 257777766655544321 11233333333 44456788
Q ss_pred CCcceEE------------eeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 775 RTVQRVV------------ALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 775 p~V~~Vr------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
|.|..|. |.|-|+.|++... .+....|+.++...
T Consensus 279 p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~-----~~~~~~f~~~l~~~ 324 (386)
T PRK06767 279 DAVEGVWYPEGELASRQMKRGGGVISFSIKGG-----KEETQAFINDLHFI 324 (386)
T ss_pred CCccEEECCCcHHHHHhCCCCCceEEEEEcCC-----HHHHHHHHHhCCcc
Confidence 8777665 7789999999633 24456666665433
No 151
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.01 E-value=7e-08 Score=109.78 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.++. ..+++.+|++..+ ....|.+.| +++|.++|+++|+++|+|++|+ +|..- +-.+.+|+.
T Consensus 159 ~~l~~~~~~-----~~~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~~--id~~~~gvD 225 (406)
T TIGR01814 159 EDILDTIEK-----NGDDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNVP--LDLHDWGVD 225 (406)
T ss_pred HHHHHHHHh-----cCCCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCcc--cccccCCCC
Confidence 345555542 2356789999998 888999998 9999999999999999999995 54432 223344544
Q ss_pred CceeecccccCCCCCcceEEEechHHHhhhcCC-------CccceeecccCC----------CCCHHHHHHHHHHHHHhc
Q 003472 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-------SKLKALLHGHSY----------SAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 682 PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~-------~~~~~~~h~~T~----------~gnPla~AAAlA~L~~l~ 744 (817)
..+.+.-|.|+|| |-+++.++++..+.+... .....+.+..++ +.|..++++..++|++++
T Consensus 226 ~~~~s~hK~l~g~--pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~ 303 (406)
T TIGR01814 226 FACWCTYKYLNAG--PGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD 303 (406)
T ss_pred EEEEcCccccCCC--CCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH
Confidence 4444678999887 335455544433222110 000001111111 235678888888999997
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHHHHcCC---Cc--ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 745 DPQTNHNIIPERRILRELWDLELIQQISSHR---TV--QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p---~V--~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+ .+++.++...+.+++.+.+.+.....+ ++ .+.+.++.++.|.+. . ....+...+.++||.
T Consensus 304 ~~g-~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~-------~~~~~~~~L~~~gi~ 371 (406)
T TIGR01814 304 QAG-MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V-------PGKAVFQALIKRGVI 371 (406)
T ss_pred hcC-HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C-------CHHHHHHHHHHCCEE
Confidence 644 356667777777776665443211012 12 123345667777765 1 124566667777874
No 152
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.00 E-value=2.3e-08 Score=111.49 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=96.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCce--eecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDI--ACYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PDi--vtlgK~Lg-gGy~ 696 (817)
+.++..| +...|.+.+ .+++.++|+++|+++|+||++.+|. .+..-. ...+ ..-+ -+|+|.+| .| +
T Consensus 161 ~v~~~~p--~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~--~~vi~~~S~SK~~g~~G-l 230 (361)
T PRK00950 161 VIFLCTP--NNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEY--DNLIIGRTFSKVFGLAG-L 230 (361)
T ss_pred EEEEeCC--CCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhc--CCEEEEEeehHhhcCch-h
Confidence 3444556 566677776 5688999999999999999998773 111111 1111 1112 28899998 67 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+|.+++++++++.+.. ...++..++++.+++.++|+ +.+..++..++.+..++++ .+.+. ..
T Consensus 231 RiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l----~~~l~-~~- 293 (361)
T PRK00950 231 RIGYGFVPEWLIDYYMR--------AKTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYL----YNELP-FK- 293 (361)
T ss_pred hcchhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH----HhhcC-ee-
Confidence 88889999999887753 22345567777777766663 3333344444443333332 22222 11
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+ ....|.++-+++ +. .....+...+.++||+
T Consensus 294 ~--~~~~~~~i~~~~-~~------~~~~~~~~~l~~~gv~ 324 (361)
T PRK00950 294 V--YPSEANFVLVDV-TP------MTAKEFCEELLKRGVI 324 (361)
T ss_pred E--CCCcceEEEEEC-CC------CCHHHHHHHHHHCCEE
Confidence 1 122356666777 21 2345677788888874
No 153
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.97 E-value=2.4e-08 Score=113.65 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=143.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... .. ...||..+. .||.
T Consensus 67 ~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~-~~~~ 121 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALL-----GA----------------GDRLVAARS-LFGS 121 (403)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHh-----CC----------------CCEEEEccC-Ccch
Confidence 4567788999999999873 689999999999999886552 11 124555544 4554
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.....-. .. ..|.- +..++ .+|
T Consensus 122 t~~~~~~~-~~------------~~G~~-----------v~~vd----------------~~d----------------- 144 (403)
T PRK07810 122 CFVVCNEI-LP------------RWGVE-----------TVFVD----------------GED----------------- 144 (403)
T ss_pred HHHHHHHH-HH------------HcCcE-----------EEEEC----------------CCC-----------------
Confidence 43321100 00 00000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.... . ..|
T Consensus 145 -~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~--~-~~g 206 (403)
T PRK07810 145 -LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRG--L-PLG 206 (403)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCh--h-hcC
Confidence 144666654 24578999986 666777775 9999999999999999999984 2222111 1 123
Q ss_pred CCCcee--ecccccCC-CCCcc-eEEEechHHHhh-hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDS-FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~Pl-sAvl~s~~i~d~-~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.|++ .+.|.++| | -.+ |+++++++.... +.. +........+|..++.++..|+.+.. ..++..+
T Consensus 207 --aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~~~l~~------~~~~~g~~~s~~~a~l~l~~L~tl~~--R~~~~~~ 275 (403)
T PRK07810 207 --ADVVVYSGTKHIDGQG-RVLGGAILGDREYIDGPVQK------LMRHTGPALSAFNAWVLLKGLETLAL--RVRHSNA 275 (403)
T ss_pred --CcEEEccCCceecCCc-CceeEEEEeChHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccCcHHH--HHHHHHH
Confidence 5877 56899976 4 234 667777765442 211 11122235689999998888887743 1122223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~ 793 (817)
++.+ +.+.++++|.|..|. |-|.|+.|+|..
T Consensus 276 ~a~~--------~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 276 SALR--------IAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHH--------HHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 3322 334567788888777 889999999964
No 154
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.96 E-value=5.2e-08 Score=110.70 Aligned_cols=258 Identities=12% Similarity=0.043 Sum_probs=149.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
.|||..+ .+-- ++.|.+|+.+.+..... ...... .+...++.++|+++++.. .+.++|+++|++
T Consensus 5 ~yld~aa------~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTPV-DPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCCC-CHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888665 2444 89999999887754321 111111 133556677788888743 357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|++.+++.+ ..+.... ...||.. ...|.+...+...... . |.
T Consensus 76 a~~~~l~~l-~~~~~~~----------------g~~Vi~~-~~~h~s~~~~~~~~~~----~----------g~------ 117 (402)
T TIGR02006 76 SNNLAIKGI-AHFYKSK----------------GNHIITS-KTEHKAVLDTCRYLER----E----------GF------ 117 (402)
T ss_pred HHHHHHHHH-HHhhcCC----------------CCEEEEC-CCccHHHHHHHHHHHh----c----------CC------
Confidence 999999877 3221111 1244444 4556654433221100 0 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++..... ..| .+.+++.+. ++..+|++..+ +..
T Consensus 118 -----~v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG-----------LID------------------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 001 144555553 23567888886 888
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~ 710 (817)
.|.+.+ +++|.++|+++|+++|+|++|+ +|... .+..+..+|+++++ |.+| . ..+|+++++++..+.
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~g-p-~G~G~l~~~~~~~~~ 223 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYG-P-KGIGALYVRRKPRVR 223 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcC-C-CceEEEEEccCCCCC
Confidence 898887 8999999999999999999995 54331 22224578999999 9654 2 237888888765443
Q ss_pred hcCCCccceeecc------c-CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 711 FVGDSKLKALLHG------H-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 711 ~~~~~~~~~~~h~------~-T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
+.. ..++ . ..+-+...+++..++|+.+++ + .+...++.+.+.+++.+.
T Consensus 224 ~~~------~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~ 278 (402)
T TIGR02006 224 LEA------LIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE-E-MAQDTAHVLALRDRLLNG 278 (402)
T ss_pred CCc------eecCCCccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHH
Confidence 321 1111 1 123456666666688888864 2 344455555666554443
No 155
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=98.96 E-value=4e-08 Score=108.67 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=107.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc-ee--ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv--tlgK~Lg-gGy~ 696 (817)
+.+++.|- .-.|.++ +.+.+++|.++|+++|+++|+||++.+|...... .+..+-.++ |+ +++|.+| .| +
T Consensus 128 ~v~i~~p~--NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNPN--NPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCch-h
Confidence 56677773 3445544 8899999999999999999999999877432111 122222233 43 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+|.+++++++++.+... ..++..++++.+++.+.|+ +++..+++.++-+...+ .+.+.+++++.
T Consensus 202 R~G~i~~~~~~~~~l~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~----~l~~~L~~~~~ 266 (330)
T TIGR01140 202 RLGFVVAHPALLARLREA--------LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERA----RLAALLARLGG 266 (330)
T ss_pred hhhheeCCHHHHHHHHhc--------CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHH----HHHHHHHhCCC
Confidence 999999999999887532 2345667777766665554 43333333433333333 45556666665
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.-..+.|.++-+++.+ ...+...++++||.
T Consensus 267 ~~~~~~~~~f~~~~~~~---------~~~l~~~l~~~gi~ 297 (330)
T TIGR01140 267 LEVVGGTALFLLVRTPD---------AAALHEALARRGIL 297 (330)
T ss_pred ceECCCCCeEEEEEcCC---------HHHHHHHHHHCCEE
Confidence 43334567777776542 24677888888873
No 156
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.95 E-value=7.4e-08 Score=108.31 Aligned_cols=261 Identities=14% Similarity=0.058 Sum_probs=148.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCC----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
|||..+ .+-- ++.|.+|+.+.+... +....... ..+...++.++++++++.. .+.+.|+++|++|+.
T Consensus 2 yld~aa------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~ 73 (379)
T TIGR03402 2 YLDNNA------TTRV-DPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDN 73 (379)
T ss_pred cCCCcC------CCCC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHH
Confidence 666544 3455 899999999887643 11110000 1234556778888888753 357999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.|++.+. ... +++..||.....|++. ......-.. .|.
T Consensus 74 ~al~~~~-~~~-----------------~~~~~vv~~~~~~~s~-~~~~~~~~~--------------~G~--------- 111 (379)
T TIGR03402 74 TAIKSAL-AAQ-----------------PEKRHIITTAVEHPAV-LSLCQHLEK--------------QGY--------- 111 (379)
T ss_pred HHHHHHH-Hhc-----------------CCCCeEEEcccccHHH-HHHHHHHHH--------------cCC---------
Confidence 9999872 211 1123566656655542 111111000 000
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+..++.+... ..| .+.+++.++ +++..+++.-+ +...|.
T Consensus 112 --~v~~v~~~~~g-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~-~n~tG~ 151 (379)
T TIGR03402 112 --KVTYLPVDEEG-----------RLD------------------LEELRAAIT--------DDTALVSVMWA-NNETGT 151 (379)
T ss_pred --EEEEEccCCCC-----------cCC------------------HHHHHHhcC--------CCcEEEEEEcc-cCCeee
Confidence 00111111000 001 145565554 23466777776 778898
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcC
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~ 713 (817)
+.+ +++|.++|+++|+++|+|++|+ +|.. -.+......|+++++ | +.|. ..+|++.++++.. +..
T Consensus 152 ~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~~--~~p 218 (379)
T TIGR03402 152 IFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGTR--FRP 218 (379)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCCC--CCC
Confidence 887 7899999999999999999995 4422 112223468999999 9 6653 3477887887641 110
Q ss_pred CCcccee-ec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 714 DSKLKAL-LH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 714 ~~~~~~~-~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
. ..... .. -...+.|..+..+..++++++.+ ..+++.++.+.+.+++.+.+
T Consensus 219 ~-~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l 271 (379)
T TIGR03402 219 L-LRGGHQERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGL 271 (379)
T ss_pred c-ccCCccCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00 01223466777777788888754 23555566666666555443
No 157
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.95 E-value=1.6e-07 Score=105.98 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=101.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhh--cCCC-Ccee--ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL--LGCV-PDIA--CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~--~gv~-PDiv--tlgK~Lg-g 693 (817)
+.++..| +.-.|.+. +.+-+++|.++|++||+++|+||++..+.-.|.. ..... .+.. .+++ +++|.+| .
T Consensus 167 ~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 167 ALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred EEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc
Confidence 3455556 34456654 6788999999999999999999999765222321 11111 1222 2333 6999998 7
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +.+|.+++++++++.+... ....+...++++..++.+.|+. .++..+++.+.-+...+ .+.+.+++
T Consensus 244 G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~----~l~~~L~~ 310 (393)
T PRK05764 244 G-WRLGYAAGPKELIKAMSKL------QSHSTSNPTSIAQYAAVAALNG--PQDEVEEMRQAFEERRD----LMVDGLNE 310 (393)
T ss_pred c-ceeEEEecCHHHHHHHHHH------HhhcccCCChHHHHHHHHHHcC--ChHHHHHHHHHHHHHHH----HHHHHHhh
Confidence 8 7899999999998877421 1123445678888877777752 21222223322222222 34445555
Q ss_pred CCCcceEEeee-eEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 774 HRTVQRVVALG-TLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~G-lm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++.+.-.+..| .++-+.+.......+ .....+...++ ++||.
T Consensus 311 ~~g~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~ 354 (393)
T PRK05764 311 IPGLECPKPEGAFYVFPNVSKLLGKSI-TDSLEFAEALLEEAGVA 354 (393)
T ss_pred CCCCcccCCCcceEEEEeccccccccc-CCHHHHHHHHHHhCCEE
Confidence 64433334444 455556654310000 12345555655 46764
No 158
>PRK07324 transaminase; Validated
Probab=98.95 E-value=6.1e-08 Score=109.11 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=103.5
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc---eeecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgK~Lg-gGy 695 (817)
+.+|++... +.-.|.+. +++.+++|.++|++||+++|+||++.++...+.... .....+. +-+++|.+| .|
T Consensus 154 ~kli~i~~p-~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s--~~~~~~~~I~~~s~SK~~~~~G- 228 (373)
T PRK07324 154 TKLICINNA-NNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPS--IADLYEKGISTNSMSKTYSLPG- 228 (373)
T ss_pred CcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCC--hhhccCCEEEEecchhhcCCcc-
Confidence 344555432 44456554 788999999999999999999999988754333111 1112223 238999998 68
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++++.+... ....|++.++++..+|..+|+.. +...++..+. +.+ -++.+.+.+++++
T Consensus 229 ~RiG~i~~~~~li~~~~~~------~~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~---~~~-~~~~l~~~l~~~~ 296 (373)
T PRK07324 229 IRVGWIAANEEVIDILRKY------RDYTMICAGVFDDMLASLALEHR--DAILERNRKI---VRT-NLAILDEWVAKEP 296 (373)
T ss_pred ceeEEEecCHHHHHHHHHH------hCcEEecCChHHHHHHHHHHcCH--HHHHHHHHHH---HHH-HHHHHHHHHhcCC
Confidence 7899999999998887532 23345677888888777776421 1112222222 222 1223445566666
Q ss_pred CcceEEeeeeE-EEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 776 TVQRVVALGTL-CAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 776 ~V~~VrG~Glm-~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
.+..++..|.+ .-+.+... .....|..+++ +.||
T Consensus 297 ~~~~~~p~gg~~~~i~~~~~------~~~~~~~~~ll~~~gv 332 (373)
T PRK07324 297 RVSYVKPKAVSTSFVKLDVD------MPSEDFCLKLLKETGV 332 (373)
T ss_pred CceEECCCceEEEEEEeCCC------CCHHHHHHHHHHhcCE
Confidence 65556655543 34444322 23455667765 4576
No 159
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.95 E-value=9.1e-08 Score=107.00 Aligned_cols=207 Identities=11% Similarity=0.053 Sum_probs=120.6
Q ss_pred CCCCCHHHHHHHHHHHHhccccCCCC-----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcc
Q 003472 414 DATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488 (817)
Q Consensus 414 Gh~~hP~V~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~ 488 (817)
|+- .|++.+++.+....++...... ..++...++.+++++++| .+.++++++|++|+..++.... .
T Consensus 11 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~~-----~ 81 (361)
T cd06452 11 GRL-TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSLC-----E 81 (361)
T ss_pred CCC-CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHhc-----C
Confidence 556 7777777776664333322111 124668899999999988 3789999999999999887651 1
Q ss_pred ccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchh
Q 003472 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (817)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~ 568 (817)
+ ..+|+.-..+|.+ ...++...|.. +..++....
T Consensus 82 ~----------------gd~Vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~~- 115 (361)
T cd06452 82 K----------------GDWVVVDGLAHYT-SYVAAERAGLN----------------------------VREVPNTGH- 115 (361)
T ss_pred C----------------CCEEEEcCCcchH-HHHHHHhcCCE----------------------------EEEEecCCC-
Confidence 1 1245554444433 32222211110 001111000
Q ss_pred hhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHH
Q 003472 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVK 648 (817)
Q Consensus 569 ~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~ 648 (817)
++. ..| .+.+++.+++.. .....++.+|++.-. ....|...+ +++|.+
T Consensus 116 -------~~~-~~d------------------~~~l~~~l~~~~-~~~~~~~~lv~l~~p-~n~tG~~~~----~~~i~~ 163 (361)
T cd06452 116 -------PEY-HIT------------------PEGYAEVIEEVK-DEFGKPPALALLTHV-DGNYGNLHD----AKKIAK 163 (361)
T ss_pred -------CCc-ccC------------------HHHHHHHHHHHh-hccCCCceEEEEECC-CCCCeeecc----HHHHHH
Confidence 000 001 134555554210 000124556666554 555676554 899999
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhhhcC
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~ 713 (817)
+|+++|+++|+||++. +|... +....+| .|++ +++|.++++ .++|.+++++++++.+..
T Consensus 164 ~~~~~~~~vivD~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 164 VCHEYGVPLLLNGAYT-VGRMP--VSGKELG--ADFIVGSGHKSMAAS-APIGVLATTEEWADIVFR 224 (361)
T ss_pred HHHHcCCeEEEECCcc-cCCcC--CCHHHcC--CCEEEecCCccccCC-CCeEEEEECHHHHHHHhc
Confidence 9999999999999994 43321 2223344 3655 778999877 589999999999888743
No 160
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.94 E-value=1.9e-08 Score=114.98 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=108.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.| .+.+++++||++|+..++.... .. ...||.....|+|.
T Consensus 54 ~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~-----~~----------------Gd~Vl~~~~~y~~t 109 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLA-----QA----------------GDNIVSSSYLYGGT 109 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CC----------------CCEEEEECCCcHHH
Confidence 456778899999999987 3689999999999999998762 11 13678888888763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ....-. .. ..| ......| .+|
T Consensus 110 ~-~~~~~~-~~------------~~G-------------~~v~~v~--------------~~d----------------- 131 (418)
T TIGR01326 110 Y-NLFKHT-LK------------RLG-------------IEVRFVD--------------PDD----------------- 131 (418)
T ss_pred H-HHHHHH-HH------------HcC-------------cEEEEEC--------------CCC-----------------
Confidence 2 211000 00 000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .|. ....+.
T Consensus 132 -~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~-----~~~~l~ 191 (418)
T TIGR01326 132 -PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPY-----LCRPID 191 (418)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhh-----cCCchh
Confidence 144565554 24678999986 666677765 8999999999999999999984 321 122233
Q ss_pred CCCcee--ecccccCC-CCCcceEEEech
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATN 705 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~ 705 (817)
..+|++ +++|.++| | ..+|++++++
T Consensus 192 ~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred cCCeEEEECccccccCCc-cceEEEEEec
Confidence 457987 78999998 7 7899888865
No 161
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.94 E-value=2.5e-08 Score=113.03 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=88.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~ 696 (817)
++.+|++|.. ...-|.+.+ +++|.++|+++|+++|+||++. .+..... .....|++ .++|.++|.-.
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~-~~~~~~p-----l~~g~Divv~S~sK~~~g~g~ 214 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFC-TPALQQP-----LKLGADVVIHSATKYLDGQGR 214 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc-ccccCCc-----hhhCCcEEEeecceeecCCcc
Confidence 4578889876 666677765 8999999999999999999984 2111111 11235877 56899976214
Q ss_pred cc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 697 PL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 697 Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
.+ |++++++++++.+... ........+|..+..++..++.+.. ..++..+++..+. +.++++|
T Consensus 215 ~~GG~vv~~~~~~~~~~~~------~~~~g~~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la--------~~L~~~p 278 (390)
T PRK08133 215 VLGGAVVGSKELMEEVFGF------LRTAGPTLSPFNAWVFLKGLETLSL--RMEAHSANALALA--------EWLEAHP 278 (390)
T ss_pred eEeEEEEcCHHHHHHHHHH------HHHhCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHH--------HHHHhCC
Confidence 55 5566777766544211 1122234567777666666554422 1122333333333 3344444
Q ss_pred CcceE------------------EeeeeEEEEEEec
Q 003472 776 TVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~ 793 (817)
.|..| .|.|.|+.|+|..
T Consensus 279 ~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 279 GVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 43322 4778899999963
No 162
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.94 E-value=2.5e-08 Score=112.43 Aligned_cols=249 Identities=15% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... .. ...||..+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g---~~~~~~~~sG~~Ai~~al~all-----~~----------------GD~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEG---GAGCYLYPSGLAAVTNSILAFV-----KA----------------GDHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHHH
Confidence 346778899999999887 3689999999999999997551 11 13677788888874
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....-... .. .+. . +.+.|.+ +
T Consensus 103 ~~~~~~~~--~~------------~gi--------------~----------------v~~~d~~-------~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KR------------MGV--------------D----------------ITYYDPL-------I------- 124 (377)
T ss_pred HHHHHHHH--Hh------------cCc--------------E----------------EEEECCC-------C-------
Confidence 22110000 00 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.. ....|.+.+ +++|.++|+++|+++|+||+|. +|-.+.. ..
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~p-----l~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKP-----LE 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCc-----cc
Confidence 034555553 24668999986 566665554 9999999999999999999994 4434332 22
Q ss_pred CCCceeec--ccccCCC-CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CVPDIACY--GKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDivtl--gK~LggG-y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
...|+++. .|.++|. =+-.|+++++++.++.+... ...+...-+|..|...+..|+.+.- ..++..+++
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~------~~~~G~~l~p~~a~~~~rgl~tl~~--R~~~~~~~a 256 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREH------SYLMGQMVDADDAYTTLRGLRTLGV--RLKQHQESS 256 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHH------HHHhCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHH
Confidence 35688854 9999862 13356777888776655311 1122334567777777666665521 234555555
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
.++.+.| ++||.|..| .|.|-|+.|++...+ .+....|+..+
T Consensus 257 ~~la~~L--------~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~----~~~~~~~~~~l 316 (377)
T TIGR01324 257 LAIAKWL--------SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT----QKQVHAFLDHL 316 (377)
T ss_pred HHHHHHH--------HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHhC
Confidence 5555433 344443322 367899999996421 24455565554
No 163
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.93 E-value=2.2e-08 Score=113.58 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=93.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.+.. .+...|++ +++|.+|+ |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4568889976 566677665 8999999999999999999984 3223322 23356776 56899986 4
Q ss_pred Cc-ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IP-LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.+ .|++++++++++.+..... . ...+..-+|..|+.++..|+.+.. ..++..+++..+.+. ++++
T Consensus 212 ~~~gG~v~~~~~li~~l~~~~~--~--~~~g~~l~~~~a~l~l~~L~tl~~--r~~~~~~na~~la~~--------L~~~ 277 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIRMVGI--K--DMTGSVISPFDAWLILRGLKTLNI--RMKRHSENAMKVAEY--------LKSH 277 (391)
T ss_pred CceEEEEEcCHHHHHHHHHHHH--H--hCCCCCCCcHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHH--------HHhC
Confidence 34 3667788888776642100 0 011234578888887776655532 233444445554443 3344
Q ss_pred CCcce------------------EEeeeeEEEEEEec
Q 003472 775 RTVQR------------------VVALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~------------------VrG~Glm~gIel~~ 793 (817)
|.|.. -+|-|.|+.|++..
T Consensus 278 p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 278 PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 43322 34678899999963
No 164
>PLN02242 methionine gamma-lyase
Probab=98.91 E-value=3e-08 Score=113.33 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=109.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +.| ..||.....|.+
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~-----~~G----------------D~Vl~~~~~Y~~- 127 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLC-----SSG----------------GHVVASNTLYGG- 127 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCcHHH-
Confidence 457889999999999987 3688899999999999998662 111 256655555532
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+..... +. .|. . +.|.+.. |
T Consensus 128 ~~~~~~~~~~---~~---------~G~-------------~-----------------~~~~d~~-------d------- 151 (418)
T PLN02242 128 THALLAHFLP---RK---------CNI-------------T-----------------TTFVDIT-------D------- 151 (418)
T ss_pred HHHHHHHhhh---hc---------cCc-------------e-----------------EEEcCCC-------C-------
Confidence 2221110000 00 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +.+..+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++.+ .... ..+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~----~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP----ARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH----HHcC
Confidence 144665554 224678999986 777777765 899999999999999999999643 2221 1223
Q ss_pred CCCcee--ecccccCCCCCc-ceEEEechHHHhhhc
Q 003472 680 CVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~P-lsAvl~s~~i~d~~~ 712 (817)
.|++ +++|.++|+--. .|++++++++++.+.
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 5776 789999863245 477888888887764
No 165
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.91 E-value=3.2e-08 Score=113.49 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++...+|+++|+++.|. +.+++++||+.|++.+++... +. ...||+....|+|..
T Consensus 61 ~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all-----~p----------------Gd~VIv~~~~y~~t~ 116 (427)
T PRK05994 61 TNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLL-----QP----------------GDEFIAARKLYGGSI 116 (427)
T ss_pred CCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CC----------------CCEEEEecCcchhHH
Confidence 466778999999999873 579999999999999998762 11 136888888887642
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.. +... ....|.- +..++ .+|
T Consensus 117 ~~-~~~~-------------~~~~G~~-----------v~~vd----------------~~d------------------ 137 (427)
T PRK05994 117 NQ-FGHA-------------FKSFGWQ-----------VRWAD----------------ADD------------------ 137 (427)
T ss_pred HH-HHHH-------------HHhcCcE-----------EEEEC----------------CCC------------------
Confidence 11 0000 0000000 00000 011
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. .++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++ . +. ....+..
T Consensus 138 ~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~---~~--~~~pl~~ 198 (427)
T PRK05994 138 PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-S---PY--LIRPIEH 198 (427)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-c---cc--cCCcccc
Confidence 134555553 25678999987 777788776 8999999999999999999995 2 21 2234456
Q ss_pred CCceee--cccccCC-CCCcceEEEec
Q 003472 681 VPDIAC--YGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 681 ~PDivt--lgK~Lgg-Gy~PlsAvl~s 704 (817)
.+|+++ +.|.+|| | -++|++++.
T Consensus 199 gaDivv~S~tK~lgg~~-~~~gG~v~~ 224 (427)
T PRK05994 199 GADIVVHSLTKFLGGHG-NSMGGIIVD 224 (427)
T ss_pred CCcEEEEcCccccCCCC-CcEEEEEEe
Confidence 789885 7899997 4 577777764
No 166
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.90 E-value=3.1e-08 Score=113.46 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..++.... . + ...||.....|+|.
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~-----~---------------~-Gd~Vl~~~~~Y~~t 110 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIA-----E---------------A-GDNIVSVAKLYGGT 110 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHh-----C---------------C-CCEEEEeCCCcchH
Confidence 3467778999999999873 578899999999999998762 1 1 13688888888873
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+... .+. .+.- +..++ .+|
T Consensus 111 -~~~~~~~-l~~------------~gi~-----------v~~~d----------------~~d----------------- 132 (425)
T PRK06084 111 -YNLLAHT-LPR------------IGIE-----------TRFAA----------------HDD----------------- 132 (425)
T ss_pred -HHHHHHh-ccc------------ceeE-----------EEEEC----------------CCC-----------------
Confidence 3222210 000 0000 00000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.. ....
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 145666664 24578999986 777788776 8999999999999999999994 32222 2223
Q ss_pred CCCcee--ecccccCCCCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTGGVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~PlsAvl~s 704 (817)
.-+|++ .+.|.++|.--.+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 457877 7799998722567766664
No 167
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.89 E-value=2.1e-07 Score=103.64 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=144.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 413 PDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 413 LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
.|-- ++.|.+|+.+.+....... .... .+...++.++|+++++.. .+.++|++++++|++.+++.. ...
T Consensus 7 ~~~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l-~~~ 82 (353)
T TIGR03235 7 TTPI-DPAVAEAMLPWLLEEFGNP-SSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL-ARA 82 (353)
T ss_pred CCCC-CHHHHHHHHHHHHhcCCCC-CchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH-HHh
Confidence 4555 8999999998875422111 1101 134567888888888743 357999999999999999766 221
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
... +++ +.|......|.+.......... .|. .+..++.+
T Consensus 83 ~~~---------------~g~-~~vi~~~~~~~s~~~~~~~~~~--------------~G~-----------~v~~v~~~ 121 (353)
T TIGR03235 83 GEQ---------------KGK-KHIITSAIEHPAVLEPIRALER--------------NGF-----------TVTYLPVD 121 (353)
T ss_pred ccc---------------CCC-CeeeEcccccHHHHHHHHHHHh--------------cCC-----------EEEEEccC
Confidence 101 112 3344445555544332221100 000 00111111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
... ..| .+.+++.+. .+..+|++.-+ +...|.+.+ +++
T Consensus 122 ~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~~ 159 (353)
T TIGR03235 122 ESG-----------RID------------------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IRE 159 (353)
T ss_pred CCC-----------cCC------------------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HHH
Confidence 000 011 144555553 23567777776 788899887 899
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccceeecc
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG 723 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~ 723 (817)
|.++|+++|+++|+|++|. +|..- +-.+ ....|+++++ |.+ |-.-+|+++++++..+.... .+...+
T Consensus 160 I~~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~~~~~~----~~~~~~ 228 (353)
T TIGR03235 160 IAEVLEAHEAFFHVDAAQV-VGKIT--VDLS--ADRIDLISCSGHKIY--GPKGIGALVIRKRGKPKAPL----KPIMFG 228 (353)
T ss_pred HHHHHHHcCCEEEEEchhh-cCCcc--cccc--ccCCCEEEeehhhcC--CCCceEEEEEccCccccccc----CceeeC
Confidence 9999999999999999994 54431 1111 2357999887 964 31226888888875432110 111111
Q ss_pred -------cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 724 -------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 724 -------~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
...+.|+...++..++|+.+++ + .++..++.+.+.+++++.+
T Consensus 229 ~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~l 277 (353)
T TIGR03235 229 GGQERGLRPGTLPVHLIVGMGEAAEIARR-N-AQAWEVKLRAMRNQLRDAL 277 (353)
T ss_pred CCCcCccccCCCChHHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHHh
Confidence 1234566777777888888753 2 2444555556666555443
No 168
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.88 E-value=1.9e-07 Score=104.37 Aligned_cols=169 Identities=10% Similarity=0.032 Sum_probs=100.2
Q ss_pred cCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHH
Q 003472 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (817)
Q Consensus 631 g~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~ 708 (817)
...|.+.+ +++|.++|++||+++|+|.+|+ +|... .-... ..+|++ +..|.|+|+ .-+|.++++++.+
T Consensus 140 ~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~ 209 (363)
T TIGR02326 140 TTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP--IDIAE--LHIDYLISSANKCIQGV-PGFGFVIARQAEL 209 (363)
T ss_pred CCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc--cchhh--cCccEEEecCccccccC-CcceEEEECHHHH
Confidence 44678776 8999999999999999999984 65432 22222 347876 678998764 2368899999887
Q ss_pred hhhcCCCccce--e---------ec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 709 DSFVGDSKLKA--L---------LH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 709 d~~~~~~~~~~--~---------~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
+.+........ . .. ...|+.++....+..++|+.+.+++..++..++...+.+++.+.+.+. ....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 287 (363)
T TIGR02326 210 AACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL--GFEP 287 (363)
T ss_pred HHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 76532111000 0 00 123556777888888888887654434455566666666665544332 2222
Q ss_pred cce--EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQR--VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~--VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.. .+ .+.+..+.+.+.. + .....+...+.++||.
T Consensus 288 ~~~~~~~-~~~~~~~~~~~~~---~-~~~~~v~~~L~~~gi~ 324 (363)
T TIGR02326 288 LLDDEIQ-SPIITSFYSPEDP---D-YRFADFYQRLKEQGFV 324 (363)
T ss_pred ccCcccC-CceEEEEECCCCC---C-CCHHHHHHHHHHCCEE
Confidence 211 22 3455566654321 0 1234566777778863
No 169
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.87 E-value=5.6e-08 Score=110.00 Aligned_cols=235 Identities=13% Similarity=0.106 Sum_probs=139.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++++++.+. +.++.++||+.|+..++.... . + ...||....+|++
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll-----~---------------~-GD~Vlv~~~~y~~- 104 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLL-----K---------------A-GDRVVLPMEAYGT- 104 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----C---------------C-CCEEEEcCCCchh-
Confidence 3467788999999999873 578889999999999987552 1 1 1256666666654
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+... ..+ +. . +.+.+. +
T Consensus 105 ~~~~~~~~--~~~------------g~--------------~----------------v~~~~~--------d------- 125 (385)
T PRK08574 105 TLRLLKSL--EKF------------GV--------------K----------------VVLAYP--------S------- 125 (385)
T ss_pred HHHHHHHh--hcc------------Cc--------------E----------------EEEECC--------C-------
Confidence 32222110 000 00 0 000000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +.++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||+++ .|-..... .+|
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~~l---~~G 188 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYRPL---RHG 188 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hhC
Confidence 134555554 125678889986 666777776 8899999999999999999993 22222211 123
Q ss_pred CCCcee--ecccccCC-CCCcceEEE-echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATL-ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.|++ .+.|.++| |-.-.|+++ .++++.+.+... ....+...+|..|+.++..|+.+.. ..++..++
T Consensus 189 --aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~------~~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~n 258 (385)
T PRK08574 189 --ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEW------RRRLGTIMQPFEAYLVLRGLKTLEV--RFERQCRN 258 (385)
T ss_pred --CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHH------HHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHH
Confidence 4876 67999986 412234344 467776655321 1112345568888888888776643 12333334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE--------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV--------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V--------------------rG~Glm~gIel~~ 793 (817)
+.++.+ .++++|.|..| +|.|.|+.|+|..
T Consensus 259 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~ 308 (385)
T PRK08574 259 AMAIAE--------FLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG 308 (385)
T ss_pred HHHHHH--------HHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence 444333 34455544432 3689999999963
No 170
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.87 E-value=3.4e-08 Score=96.47 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCC
Q 003472 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (817)
Q Consensus 617 ~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggG 694 (817)
..+++++++++. ....|...+ .++|.++|+++|+++|+||++.++.....+ .......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--cccccccCCEEEEEcccccCC-
Confidence 467899999997 788887776 499999999999999999999877554433 22223468999888 99987
Q ss_pred CCcceEEEec
Q 003472 695 VIPLAATLAT 704 (817)
Q Consensus 695 y~PlsAvl~s 704 (817)
...|.++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 456666553
No 171
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.86 E-value=6.3e-08 Score=110.04 Aligned_cols=235 Identities=14% Similarity=0.098 Sum_probs=143.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.|. +.++.++||.+|+..++.... .. ...||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all-----~~----------------GD~Vi~~~~~y~~~ 116 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFL-----KP----------------GDRVVSIKDTYGGT 116 (398)
T ss_pred CCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCchHHH
Confidence 4578889999999999883 578999999999998887551 11 13678877777652
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+.-. ... .|.- +..++ ..|
T Consensus 117 ~-~~~~~~-~~~------------~Gi~-----------v~~vd----------------~~d----------------- 138 (398)
T PRK08249 117 N-KIFTEF-LPR------------MGVD-----------VTLCE----------------TGD----------------- 138 (398)
T ss_pred H-HHHHHH-Hhh------------CCeE-----------EEEcC----------------CCC-----------------
Confidence 1 111000 000 0000 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .++.+|++|-. ....|.+.+ +++|.++|+++|+++|+||++..+ -.+. ...
T Consensus 139 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l~ 198 (398)
T PRK08249 139 -HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PLA 198 (398)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----chh
Confidence 134555554 24568888875 566777776 899999999999999999998532 1111 122
Q ss_pred CCCcee--ecccccCC-CCCcc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
...|++ +++|.+|| | -.+ |++++++++++.+..- ........+|..++.++..|+.+.. ..++..++
T Consensus 199 ~~~Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l~~~------~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~n 269 (398)
T PRK08249 199 LGADLVIHSATKFLSGHA-DALGGVVCGSKELMEQVYHY------REINGATMDPMSAYLILRGMKTLKL--RVRQQQES 269 (398)
T ss_pred hCCCEEeccCceecCCCC-CceEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHH
Confidence 346776 67899986 3 233 5566778887766321 1223445688888888888877742 22333444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+..+.+ .+++||.|..| .|.|.|+.|+|..
T Consensus 270 a~~la~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 270 AMALAK--------YLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHH--------HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 444433 34455544433 3678899999964
No 172
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.86 E-value=1.3e-07 Score=105.33 Aligned_cols=188 Identities=18% Similarity=0.131 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-c-h-hhh
Q 003472 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-T-T-ADL 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~-~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~-a-~e~ 677 (817)
+.|++.+++. ...+ ++.+|++... +...|... +.+.+++|.++|++||+++|+||++..+ ..+.. + . ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-cccccccc-ccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 5677777742 1122 3566777665 66667655 7888999999999999999999999766 44432 1 1 222
Q ss_pred cCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 678 LGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 678 ~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
..-.++++ +++|.+| -| +.+|.+++++++.+.+.. +..++..+....+++.+.+.--.. ..+.+.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 275 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPEL--VEKWLE 275 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhcccc--cccccc
Confidence 33344533 7899998 58 789999999999998853 233444466777666666554431 001222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEEe--eeeEEEEEEecCCCCCCcchHHHHHHHHHHc-CCC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVVA--LGTLCAIELQAAGCNAGYCLIELFLYNFLTT-GMH 816 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~VrG--~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~-Gv~ 816 (817)
+..+.+.+. .+.+.+.+++... .+.+ -|.++-+.+... ....+...++++ ||.
T Consensus 276 ~~~~~l~~~-~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~ 331 (363)
T PF00155_consen 276 ELRERLREN-RDLLREALEEIGI--TVLPPEAGFFLWVRLDPN-------DAEELAQELLEEYGIL 331 (363)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTS--EEEHHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEE
T ss_pred cchhhHHHH-HHHHHHHHHHhhh--heeeccCccEEEEEcccc-------hHHHHHHHHHHhCCEE
Confidence 222222221 1223444444422 2322 466666666543 345677778887 763
No 173
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.85 E-value=5.3e-07 Score=100.90 Aligned_cols=293 Identities=14% Similarity=0.051 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 003472 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~ 496 (817)
+|.+.+|+....... +.........+...++.+.|+++++.+ -+.++++++|++|+..++..+ +......
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~------- 103 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAREE------- 103 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHhcc-------
Confidence 788888887765543 211111122355578889999988743 235788999999999999876 3221110
Q ss_pred CCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 497 ~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
.....|+..+.+|.+ ...+....|.. +..++.+..+
T Consensus 104 -------~~g~~vl~~~~~h~~-~~~~~~~~G~~----------------------------~~~v~~~~~~-------- 139 (373)
T TIGR03812 104 -------KRTPNIIVPESAHFS-FEKAAEMLGLE----------------------------LRYAPLDEDY-------- 139 (373)
T ss_pred -------CCCcEEEECCcchHH-HHHHHHHcCCe----------------------------EEEEeeCCCC--------
Confidence 011356665554443 22222211110 0111111000
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
..| .+.+++.+++ ..++.+++.|. ...|.+.+ +++|.++|+++|++
T Consensus 140 ---~~d------------------~~~l~~~l~~-------~~~~vv~~~~~--~~tG~~~~----~~~i~~l~~~~~~~ 185 (373)
T TIGR03812 140 ---TVD------------------VKDVEDLIDD-------NTIGIVGIAGT--TELGQIDD----IEELSKIALENGIY 185 (373)
T ss_pred ---CcC------------------HHHHHHHHhh-------CcEEEEEECCC--CCCCccCC----HHHHHHHHHHcCCe
Confidence 011 2456666652 23456667774 45677766 89999999999999
Q ss_pred EEEeeeeecccccccc-chhh--hcCC---CCceeec--ccccCCCCCcceEEE-echHHHhhhcCCCccceeeccc---
Q 003472 657 VIFDEVFTGFWRLGVE-TTAD--LLGC---VPDIACY--GKLLTGGVIPLAATL-ATNAVFDSFVGDSKLKALLHGH--- 724 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~-~a~e--~~gv---~PDivtl--gK~LggGy~PlsAvl-~s~~i~d~~~~~~~~~~~~h~~--- 724 (817)
+|+||+|.++ -.+.. +... ..++ ..|.+++ -|-+.++ .|.|+++ .++++.+.+.... ++..+.
T Consensus 186 livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~~~---~~~~~~~~~ 260 (373)
T TIGR03812 186 LHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSVDA---PYLTVKKQA 260 (373)
T ss_pred EEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhhcccC---cccCCCCCc
Confidence 9999999644 21100 0001 1111 2355543 3632334 5777666 5777777663211 111111
Q ss_pred --CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcch
Q 003472 725 --SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCL 802 (817)
Q Consensus 725 --T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~ 802 (817)
+.+-++.+++++.++|+.+.++++ +++.++...+.++|.+.+.+. .+..+.. ...-++.+.+.+
T Consensus 261 ~~~gt~~~~~~~~~~~~l~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~--g~~~~~~--~~~~~v~~~~~~--------- 326 (373)
T TIGR03812 261 TITGTRSGASAAATYAVIKYLGREGY-RKIVAECMENTRYLVEELKKI--GFEPVIE--PVLNIVAFEVDD--------- 326 (373)
T ss_pred ceEeechhHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHhC--CCeEEcC--CCceEEEEEeCC---------
Confidence 123456788889999998865433 445555666666555544332 1211211 122233333321
Q ss_pred HHHHHHHHHHcCCC
Q 003472 803 IELFLYNFLTTGMH 816 (817)
Q Consensus 803 ~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||+
T Consensus 327 ~~~v~~~L~~~gi~ 340 (373)
T TIGR03812 327 PEEVRKKLRDRGWY 340 (373)
T ss_pred HHHHHHHHHHCCce
Confidence 13577777888874
No 174
>PRK07777 aminotransferase; Validated
Probab=98.85 E-value=5.3e-07 Score=101.82 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=98.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhc-CCC-Cce--eecccccC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCV-PDI--ACYGKLLT- 692 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~-gv~-PDi--vtlgK~Lg- 692 (817)
++.+|++... +.-.|... +++.+++|.++|++||+++|+||++.++.-.+.. .....+ +.. .++ .+++|.+|
T Consensus 159 ~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 236 (387)
T PRK07777 159 RTRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNV 236 (387)
T ss_pred ccEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccC
Confidence 3456666654 66677766 7889999999999999999999999766322321 111111 211 233 37999998
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +-+|.+++++++.+.+... .+..++..++....++.++++. .+...+.+.+..+...+.+. +.++
T Consensus 237 ~G-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~----~~L~ 303 (387)
T PRK07777 237 TG-WKIGWACGPAPLIAAVRAA------KQYLTYVGGAPFQPAVAHALDH--EDAWVAALRDSLQAKRDRLA----AGLA 303 (387)
T ss_pred cC-ceeEEEecCHHHHHHHHHH------HhhcccCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHH----HHHH
Confidence 68 7999999999988877532 1223454444444444444432 12222333333333333333 3333
Q ss_pred cCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+... +....| |.++-+++...+ ......|...++ ++||
T Consensus 304 ~~~~~~~~~~g-~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv 343 (387)
T PRK07777 304 EAGFEVHDSAG-TYFLCADPRPLG----YDDGTEFCRALPERVGV 343 (387)
T ss_pred hCCCCccCCCc-ceEEEecccccC----CCCHHHHHHHHHHhCCE
Confidence 3332 111222 455666764321 113356666775 4576
No 175
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.84 E-value=1e-07 Score=108.47 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=95.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+|+++.. +..+.. .+...|++ .++|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4568888865 566677766 89999999999999999999952 222222 23356876 56899986 32
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+=.|+++.++++++.+.... ......+..+|+.++.++..|+.+.. ..++..+++..+.+ .+++||
T Consensus 219 ~~gG~v~~~~~l~~~l~~~~----~~~~~g~~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~--------~L~~~p 284 (403)
T PRK07503 219 ITAGLVVGGKALADRIRLEG----LKDMTGAVMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAE--------WLARHP 284 (403)
T ss_pred eeEEEEEcCHHHHHHHHhhh----HHhCcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHH--------HHHhCC
Confidence 33566777888877664210 01112356789999988888777632 12333344444443 334444
Q ss_pred CcceE------------------EeeeeEEEEEEec
Q 003472 776 TVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~ 793 (817)
.|..| +|.|.|+.+++..
T Consensus 285 ~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 285 AVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 43333 4678899999964
No 176
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.84 E-value=7.9e-08 Score=109.35 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=100.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc--CCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG- 693 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~--GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg- 693 (817)
+..+|++|.. ....|.+.+ +++|.++|+++ |+++|+||++. .+-.+.. .+...|++ .++|.++|
T Consensus 149 ~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~-~~~~~~~-----l~~g~Divv~S~sK~l~g~ 217 (400)
T PRK06234 149 NTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC-TPYIQRP-----LQLGADVVVHSATKYLNGH 217 (400)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC-chhcCCc-----hhhCCcEEEeeccccccCC
Confidence 3568888876 666777766 99999999997 99999999984 2222221 22346877 56899986
Q ss_pred CCCcc-eEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPL-AATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| -.+ |++++++++++.+.... .....+...+|..++.++..|+.+.. ..++..+++.++.+ .++
T Consensus 218 g-~~~gG~v~~~~~~~~~l~~~~----~~~~~g~~l~p~~a~l~~~~l~tl~~--r~~~~~~na~~~a~--------~L~ 282 (400)
T PRK06234 218 G-DVIAGFVVGKEEFINQVKLFG----IKDMTGSVIGPFEAFLIIRGMKTLQI--RMEKHCKNAMKVAK--------FLE 282 (400)
T ss_pred C-CceeEEEEecHHHHHHHHHHH----HHHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHH--------HHH
Confidence 4 344 77888888877664211 00122456789999888887765532 23444455544444 334
Q ss_pred cCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 773 SHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 773 ~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+||.|..| .|.|.|+.|++... .+....|+..+
T Consensus 283 ~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-----~~~~~~f~~~l 333 (400)
T PRK06234 283 SHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-----VEEGKVVMNNV 333 (400)
T ss_pred cCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-----HHHHHHHHHhC
Confidence 44444322 36788999999643 13344555443
No 177
>PRK08960 hypothetical protein; Provisional
Probab=98.84 E-value=1.8e-06 Score=97.64 Aligned_cols=293 Identities=15% Similarity=0.056 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~ 495 (817)
.+.+.+++.+.+.... .+....+..+....+++.+.+..+.+ ..+.+++++++++|...++.... ..
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-----~~------ 115 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-----DP------ 115 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-----CC------
Confidence 6889999888776421 11112233445566676665432211 13579999999999998886651 11
Q ss_pred cCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 496 ~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
...|+..+-+|.+..... ...|.. +..++.....
T Consensus 116 ----------gd~vlv~~p~y~~~~~~~-~~~g~~----------------------------~~~v~~~~~~------- 149 (387)
T PRK08960 116 ----------GKHWLLADPGYPCNRHFL-RLVEGA----------------------------AQLVPVGPDS------- 149 (387)
T ss_pred ----------CCEEEEcCCCCcchHHHH-HhcCCe----------------------------EEEEecCccc-------
Confidence 136777777776643221 111110 0111110000
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
+ |. + + .+.+++.++ ......+|.-| +.-.|... +.+-+++|.++|++||+
T Consensus 150 -~--~~-~--------d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~ 199 (387)
T PRK08960 150 -R--YQ-L--------T--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARGG 199 (387)
T ss_pred -C--CC-C--------C--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCC
Confidence 0 00 0 0 144555554 23455677777 45566666 78889999999999999
Q ss_pred cEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHH
Q 003472 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHAL 731 (817)
Q Consensus 656 lLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPl 731 (817)
++|+||+...+--.+.. .....+.++++ +++|.+| .| +-+|.+++++++++.+..- ....+.+.+.+
T Consensus 200 ~li~De~Y~~~~~~~~~--~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~s~~ 270 (387)
T PRK08960 200 HLVVDEIYHGLTYGVDA--ASVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKL------AQNLYISASTP 270 (387)
T ss_pred EEEEEccccccccCCCC--CChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHH------HhhhccCCCHH
Confidence 99999999776221221 12234456766 5899997 68 7999999999998877421 12234455777
Q ss_pred HHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 732 GCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 732 a~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+-.++.+.|+ + +....+.+..+.+.+. ++.+.+.++++++...+ ..-|.++-+++.+.. .....+...+
T Consensus 271 ~q~a~~~~l~---~-~~~~~l~~~~~~~~~~-~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~l 340 (387)
T PRK08960 271 AQHAALACFE---P-ETLAILEARRAEFARR-RDFLLPALRELGFGIAVEPQGAFYLYADISAFG-----GDAFAFCRHF 340 (387)
T ss_pred HHHHHHHHhh---c-CcHHHHHHHHHHHHHH-HHHHHHHHHhcCCcCCcCCCeeEEEEEeccccC-----CCHHHHHHHH
Confidence 7676666653 1 1112222222222221 22344555556542212 334777788775421 1224555565
Q ss_pred H-HcCCC
Q 003472 811 L-TTGMH 816 (817)
Q Consensus 811 l-~~Gv~ 816 (817)
+ ++||.
T Consensus 341 l~~~gi~ 347 (387)
T PRK08960 341 LETEHVA 347 (387)
T ss_pred HHhCCEE
Confidence 5 46763
No 178
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.83 E-value=8.2e-07 Score=100.62 Aligned_cols=306 Identities=9% Similarity=0.044 Sum_probs=165.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|||..+ .|-- .+.+.+|+.+.+........ ... .+...++.+.++++++....+.+.|++++++
T Consensus 18 iyld~a~------~~~~-p~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 18 VYLDSAA------TALK-PQAVIDATQQFYRLSSGTVH-RSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 6787544 4656 88999999887754321110 011 1234567778888877421357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..++........ . ...+||..+..|++.......+... .|.
T Consensus 90 ~l~~~~~~~~~~~~-~----------------~gd~Vl~~~~~~~s~~~~~~~~~~~--------------~g~------ 132 (398)
T TIGR03392 90 SINLVAQSYARPRL-Q----------------PGDEIIVSEAEHHANLIPWLMVAQQ--------------TGA------ 132 (398)
T ss_pred HHHHHHHHhhhccC-C----------------CCCEEEECCcchhHHHHHHHHHHHH--------------cCc------
Confidence 99988876511000 1 1236777777777632111111000 000
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++.+..+ ..| .+.+++.+.+ +..+|++.-+ +..
T Consensus 133 -----~v~~v~~~~~~-----------~~~------------------~~~l~~~i~~--------~t~lv~i~~~-~n~ 169 (398)
T TIGR03392 133 -----KVVKLPIGADL-----------LPD------------------IRQLPELLTP--------RTRILALGQM-SNV 169 (398)
T ss_pred -----EEEEEecCCCC-----------CcC------------------HHHHHHHhcc--------CceEEEEECc-ccc
Confidence 00111111000 001 2456666542 2345555544 666
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~ 710 (817)
.|.+.+ +++|.++|+++|+++|+|++|. +|.. . .+.....+|+++++ |.+|- .-+|.+++++++.+.
T Consensus 170 tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~---~~~~~~~~d~~~~s~~K~~gp--~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 170 TGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P---PDVQALDIDFYAFSGHKLYGP--TGIGVLYGKTELLEA 238 (398)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C---CChhhcCCCEEEEecccccCC--CceEEEEEcHHHHhh
Confidence 788876 8899999999999999999994 4332 1 11122357999998 96642 126888899988776
Q ss_pred hcCCCcccee-----ecc-------cCC---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 711 FVGDSKLKAL-----LHG-------HSY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 711 ~~~~~~~~~~-----~h~-------~T~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+......... ... .-| +-|..+.++..++++.+++.+. +++.++...+.+++.+ .+++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~-~~i~~~~~~l~~~l~~----~l~~l~ 313 (398)
T TIGR03392 239 MPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDI-AAAEAWSVSLADLAEE----RLAQLP 313 (398)
T ss_pred CCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH----HHhcCC
Confidence 5321000000 000 001 2355677888888988866433 3555555556554443 444444
Q ss_pred CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-.. -...++.+.+... ....+...+.++||.
T Consensus 314 g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~~gI~ 348 (398)
T TIGR03392 314 GFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAESGIA 348 (398)
T ss_pred CeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHhCCEE
Confidence 321110 1234556555321 234466666677763
No 179
>PRK07550 hypothetical protein; Provisional
Probab=98.82 E-value=8.9e-07 Score=99.95 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc---hhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~---a~e~~ 678 (817)
+.+++.+++ ...+.+++-| ..-.|.+. +.+.+++|.++|++||+++|.||+...| +.+... .....
T Consensus 154 ~~l~~~~~~-------~~~~v~~~~P--~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~ 222 (386)
T PRK07550 154 AAAEALITP-------RTRAIALVTP--NNPTGVVY-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADP 222 (386)
T ss_pred HHHHHHhcc-------cCcEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCC
Confidence 456666642 2234455555 34456655 7889999999999999999999999766 322111 11111
Q ss_pred CCCCc---eeecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PD---ivtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
+-..+ +.+++|.+| .| +.+|++++++++++.+... ....+.+.+.++..++.+.|+.+++ ..+++.+
T Consensus 223 ~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~------~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~ 293 (386)
T PRK07550 223 DWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKF------MDTVAICAPRIGQIAVAWGLPNLAD--WRAGNRA 293 (386)
T ss_pred CccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHhccHHH--HHHHHHH
Confidence 11122 348999998 78 7999999999988877431 2234455567776666666643211 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
..+...+ .+.+.+++++.+ .+... |.++-+++...+ .....+...++ ++||.
T Consensus 294 ~~~~~~~----~l~~~L~~~~~~-~~~~~g~~~~~~~~~~~~-----~~~~~l~~~l~~~~gv~ 347 (386)
T PRK07550 294 EIARRRD----AFRAVFARLPGW-ELLASGAYFAYVRHPFPD-----RPSREVARRLAKEAGIL 347 (386)
T ss_pred HHHHHHH----HHHHHHHhCCCc-eeCCCceEEEEecCCCCC-----CCHHHHHHHHHHhcCEE
Confidence 2222222 344455554332 23333 445555654311 22344555554 46763
No 180
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.82 E-value=1.4e-06 Score=98.53 Aligned_cols=299 Identities=9% Similarity=-0.023 Sum_probs=162.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
.|||..+ .|-- .+.+.+|+.+.+..........+ ..+...++.+.++++++.. .+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQI-PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 6777543 4555 89999999998876432110011 1234568888999988743 23689999999988
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccc-c---ccCCCCCCCcCCCCCccCCccccCC
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-E---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~gal-s---lt~~~~~~~~~~~~~~~~~~~~~~~ 550 (817)
..++... .... . + ..+|+..+..|.+ +.... . ..|..
T Consensus 91 ~~~~~~~-~~~~-~---------------~-gd~vl~~~~~~~s-~~~~~~~~~~~~g~~-------------------- 131 (397)
T TIGR01976 91 FLLSRAI-SRRW-G---------------P-GDEVIVTRLDHEA-NISPWLQAAERAGAK-------------------- 131 (397)
T ss_pred HHHHHHH-HhcC-C---------------C-CCEEEEcCCchHh-HHHHHHHHHHhcCCE--------------------
Confidence 7666554 1111 1 1 1356666655544 22111 1 11110
Q ss_pred CcccccCcceeecCCc-hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 003472 551 PTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (817)
Q Consensus 551 p~~~~~~~~~~v~~P~-~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~ 629 (817)
+..++.+. .+ ..| .+.+++.+. ++..+|++.-+
T Consensus 132 --------~~~~~~~~~~~-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~- 165 (397)
T TIGR01976 132 --------VKWARVDEATG-----------ELH------------------PDDLASLLS--------PRTRLVAVTAA- 165 (397)
T ss_pred --------EEEEeccccCC-----------CcC------------------HHHHHHhcC--------CCceEEEEeCC-
Confidence 00111100 00 001 245555554 23456666665
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHH
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i 707 (817)
....|.+.+ +++|.++|+++|+++|+||+|. .| .+.. -.. ...+|++ ++.|.+| .++|.+++++++
T Consensus 166 ~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~~-~~~--~~~~d~~~~s~~K~~g---~~~G~l~~~~~~ 233 (397)
T TIGR01976 166 SNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGLI-DVQ--ATGADFLTCSAYKFFG---PHMGILWGRPEL 233 (397)
T ss_pred CCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccCC-CHH--HcCCCEEEEechhhcC---CceEEEEEcHHH
Confidence 677788876 9999999999999999999994 33 1211 112 2357877 6689874 358889999998
Q ss_pred HhhhcCCCccceeeccc------CCCCCHHHHHHHHHHHHHhcCcC-------------chhcHHHHHHHHHHHHHHHHH
Q 003472 708 FDSFVGDSKLKALLHGH------SYSAHALGCAAAAKSIKWFKDPQ-------------TNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 708 ~d~~~~~~~~~~~~h~~------T~~gnPla~AAAlA~L~~l~~~~-------------l~~~l~~~~~~lg~~l~~~l~ 768 (817)
++.+..... .+.... +-+.+...+++..++++.+++.+ ..++..++...+.+++.+
T Consensus 234 ~~~l~~~~~--~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 308 (397)
T TIGR01976 234 LMNLPPYKL--TFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV--- 308 (397)
T ss_pred HhhCCCccc--cCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHH---
Confidence 876643210 000000 01235566677778888875432 123344444555555444
Q ss_pred HHHHcCCCc---ce--EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTV---QR--VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V---~~--VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+++.+.+ .. ..-.+-++.+.+... ....+..++.++||.
T Consensus 309 -~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~ 353 (397)
T TIGR01976 309 -GLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVVRRLADQGID 353 (397)
T ss_pred -HHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHHHHHHHCCeE
Confidence 33333321 11 111233555554321 234566677777864
No 181
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.82 E-value=8.6e-07 Score=101.09 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEec-hHHHhhhc
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFV 712 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s-~~i~d~~~ 712 (817)
+++|.++|+++|+++|+||+|. +|.++........+ ..|++ +++|+++| .+.|+++++ +++.+.+.
T Consensus 182 ~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 182 FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PRGGLILTNDEELAKKIN 250 (416)
T ss_pred HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHH
Confidence 8999999999999999999984 44343211111122 35766 77999954 357778885 68887764
No 182
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.81 E-value=5.6e-07 Score=101.94 Aligned_cols=92 Identities=12% Similarity=-0.000 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee-eccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~-TGfGRtG~~~a~e~~gv 680 (817)
+.+++.+.+ ...-..++..|. .+ ...+ +++|.++|++||+++|+||+| .|+--.|... ..+.
T Consensus 151 ~~l~~~i~~------~~~~~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~- 213 (402)
T cd00378 151 DALEKMALE------FKPKLIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP- 213 (402)
T ss_pred HHHHHHHHh------CCCCEEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-
Confidence 456666642 112234455765 33 3333 889999999999999999998 3431112111 1112
Q ss_pred CCcee--ecccccCCCCCcceEEEech-HHHhhhc
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s~-~i~d~~~ 712 (817)
..|++ +++|++ .| .+.|++++++ ++++.+.
T Consensus 214 ~~dv~~~s~sK~l-~G-~~gg~i~~~~~~~~~~l~ 246 (402)
T cd00378 214 GADVVTTTTHKTL-RG-PRGGLILTRKGELAKKIN 246 (402)
T ss_pred CCcEEEeccccCC-CC-CCceEEEeccHHHHHHHH
Confidence 35866 678999 44 4678888877 8877764
No 183
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.80 E-value=1.9e-06 Score=97.66 Aligned_cols=306 Identities=10% Similarity=0.047 Sum_probs=165.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCC------CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~------~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|||-.+ .|-- .+.+.+|+.+.+.......... ...+...++-++|+++++....+.+.|+++++++
T Consensus 21 ~yld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSAA------TALK-PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCCc------ccCC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 6787544 4555 7899999988776532111000 0123455677788888874223579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
+..+++... .... ....+||..+..|++....-..+... .|.
T Consensus 94 i~~~~~~~~---~~~~--------------~~gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 135 (401)
T PRK10874 94 INLVAQSYA---RPRL--------------QPGDEIIVSEAEHHANLVPWLMVAQQ--------------TGA------- 135 (401)
T ss_pred HHHHHHHhh---hccC--------------CCcCEEEECCcchHHHHHHHHHHHHH--------------hCC-------
Confidence 998887651 0000 11236888877777631111111000 000
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
.+..++.+..+ ..| .+.+++.+. + +..+|++.-+ ....
T Consensus 136 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~-------~-~t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR-----------LPD------------------VDLLPELIT-------P-RTRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC-----------cCC------------------HHHHHHhcC-------c-CcEEEEEeCC-cccc
Confidence 00111111000 001 245665554 1 3345555554 6677
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCC-CCCcceEEEechHHHhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~Lgg-Gy~PlsAvl~s~~i~d~ 710 (817)
|.+.+ +++|.++|+++|+++|+|++|. +|..- .+.....+|+++++ |.+|- | +|.+.+++++.+.
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~----~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 241 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP----ADVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEA 241 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc----CCchhcCCCEEEEecccccCCCc---cEEEEEchHHHhc
Confidence 88876 8999999999999999999994 44331 11122358988776 96542 3 5788899998876
Q ss_pred hcCCC---cc-ce----------eecccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 711 FVGDS---KL-KA----------LLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 711 ~~~~~---~~-~~----------~~h~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+..-. .. .. ...... -+.|..+.++..++++.+++.+. +++.++.+.+.+++.+ .+++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~-~~~~~~~~~l~~~l~~----~l~~~~ 316 (401)
T PRK10874 242 MSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDI-NQAESWSRSLATLAED----ALAKLP 316 (401)
T ss_pred CCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH----HHhcCC
Confidence 53110 00 00 000000 12355677788888888865332 3345555555554443 444554
Q ss_pred CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-++ ..+.++.+.+... ....+...+.++||.
T Consensus 317 g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~gI~ 351 (401)
T PRK10874 317 GFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLAEYGIA 351 (401)
T ss_pred CEEEeCCCCCcEEEEEECCc-------CHHHHHHHHHHCCcE
Confidence 332221 1233556665321 224555666677773
No 184
>PRK06460 hypothetical protein; Provisional
Probab=98.79 E-value=2.5e-07 Score=104.41 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=93.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC--C
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg--G 694 (817)
++.+|++|.. ....|.+.+ +++|.++|+++|+++|+||++..+ -... ......|++ +++|.++| +
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 4568888887 777787776 678999999999999999998422 1111 111235776 78999974 2
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.-+|.+++++++++.+... ....+...+|..+..++..++.++. ..+++.+++..+.+.| +++
T Consensus 199 -~~~G~~~~~~~l~~~l~~~------~~~~g~~~~~~~a~~~l~~~~~l~~--r~~~~~~n~~~l~~~L--------~~~ 261 (376)
T PRK06460 199 -VIAGLAAGYGKLLNVIDQM------RRTLGTSLDPHAAYLTLRGIKTLKI--RMDVINRNAEQIAEFL--------EGH 261 (376)
T ss_pred -ceEEEEecCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHH--------HcC
Confidence 2356688888888877421 1122334567666666666666632 2344555555554433 333
Q ss_pred CCcceE------------------EeeeeEEEEEEec
Q 003472 775 RTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel~~ 793 (817)
|.|..| .|.|-|+.|++..
T Consensus 262 p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 262 PKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 433222 4789999999974
No 185
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.79 E-value=9.5e-07 Score=98.93 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~ 696 (817)
++.+|++... ....|.+.+ +++|.++|+++|+++|+||+| ++|...-. .+ ...+|+++++ |.+++. -
T Consensus 137 ~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~~~~~~livD~a~-~~g~~~~~--~~--~~~~D~~~~s~~K~l~~p-~ 205 (376)
T TIGR01977 137 NTKLIVVSHA-SNVTGTILP----IEEIGELAQENGIFFILDAAQ-TAGVIPID--MT--ELAIDMLAFTGHKGLLGP-Q 205 (376)
T ss_pred CCeEEEEECC-CCCccccCC----HHHHHHHHHHcCCEEEEEhhh-ccCccCCC--ch--hcCCCEEEecccccccCC-C
Confidence 3556666665 677888887 889999999999999999999 46544211 11 2357887654 988763 2
Q ss_pred cceEEEechHHH-hhhcCCC-cccee-e-------c-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 697 PLAATLATNAVF-DSFVGDS-KLKAL-L-------H-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 697 PlsAvl~s~~i~-d~~~~~~-~~~~~-~-------h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
.+|+++++++.. ..+.... ..... . . ..+.+.+...+++..++|+.+.+.+. +++.++...+.+++.+
T Consensus 206 g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~-~~~~~~~~~l~~~~~~ 284 (376)
T TIGR01977 206 GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGI-ANIAKKECMLTEKLLN 284 (376)
T ss_pred CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH
Confidence 356676676641 1111100 00000 0 0 00113456777778889999876432 4555666666665555
Q ss_pred HH
Q 003472 766 EL 767 (817)
Q Consensus 766 ~l 767 (817)
.+
T Consensus 285 ~l 286 (376)
T TIGR01977 285 GL 286 (376)
T ss_pred HH
Confidence 43
No 186
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.78 E-value=9.1e-07 Score=100.61 Aligned_cols=268 Identities=10% Similarity=-0.005 Sum_probs=150.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC------CChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~------~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|||..+ .|-- .+.|.+|+.+.+.........+. ..+...++-+.|+++++....+.++|+++++++
T Consensus 25 iYld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------cccC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 6888654 3455 88999999888765321110001 123455677778888764113579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
+..+++.. ....-+ ...+||..+..||+....-..+... .|.
T Consensus 98 l~~~~~~~-~~~~~~----------------~gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 139 (406)
T PRK09295 98 INLVANSW-GNSNVR----------------AGDNIIISEMEHHANIVPWQMLCAR--------------VGA------- 139 (406)
T ss_pred HHHHHHHh-hhhcCC----------------CcCEEEECcchhhHHHHHHHHHHHH--------------cCc-------
Confidence 99888754 110001 1236777777776532111111000 000
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
.+..++.+... ..| .+.+++.+. .++..|++.-+ ...-
T Consensus 140 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG-----------TLQ------------------LETLPALFD--------ERTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC-----------CCC------------------HHHHHHhcC--------CCcEEEEEecc-hhcc
Confidence 00111111000 001 144555553 13455666555 6777
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~ 711 (817)
|.+.+ +++|.++|+++|+++|+|++|+ +|..- .-.+ ...+|+++++ |.+|- .-+|.+.+++++.+.+
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~~~~ 246 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALDCDFYVFSGHKLYGP--TGIGILYVKEALLQEM 246 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc--cCch--hcCCCEEEeehhhccCC--CCcEEEEEchHhHhhC
Confidence 88887 8999999999999999999994 54331 1111 2357998776 95542 1268888999887654
Q ss_pred cCC---Ccc-ce--eecc----------cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 712 VGD---SKL-KA--LLHG----------HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 712 ~~~---~~~-~~--~~h~----------~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
... ... .. .... .+-+.|..++++..++++.+.+.+. +++.++.+.+.+++.+.
T Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~ 316 (406)
T PRK09295 247 PPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGL-NNIAEYEQNLMHYALSQ 316 (406)
T ss_pred CCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH
Confidence 310 000 00 0000 0114577888889999999876443 45556666666655443
No 187
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.78 E-value=2.2e-07 Score=105.25 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=134.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +....++||++|+..++.... .. ...||.....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVL-----RP----------------GDHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchHH
Confidence 3456778999999999874 466777899999999987662 11 13677777777542
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+... .+ ..+.- +.+.+.. |
T Consensus 114 -~~~~~~~----~~---------~~gi~------------------------------~~~~d~~-------d------- 135 (388)
T PRK07811 114 -FRLIDKV----FT---------RWGVE------------------------------YTPVDLS-------D------- 135 (388)
T ss_pred -HHHHHHh----Cc---------CCCeE------------------------------EEEeCCC-------C-------
Confidence 2111110 00 00000 0011100 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++. .+-.+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a-~~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFA-SPYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCC-ccccCCc-----hh
Confidence 144555554 24678888865 555565554 9999999999999999999984 3222221 22
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.-.|++ .++|.++| |-.-.|+++++ +++.+.+... ........+|..++.++..|+.+.. ..++..++
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~L~tl~~--R~~~~~~n 267 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFL------QNGAGAVPGPFDAYLTLRGLKTLAV--RMDRHSEN 267 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 346876 56899986 21234666664 5655544210 1111223457777666666655422 12333334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 756 RRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+..+. +.+++||.|..| .|.|.|+.|+|..
T Consensus 268 a~~la--------~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 268 AEAVA--------EFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHHHH--------HHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 44333 344555554433 3667799999964
No 188
>PRK10534 L-threonine aldolase; Provisional
Probab=98.77 E-value=4e-07 Score=100.50 Aligned_cols=294 Identities=10% Similarity=-0.010 Sum_probs=152.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alkl 480 (817)
+||+.| +.+-| - +|.+.+|+.+.......+ +..+...+|.+.|+++.| .+.+.++++|++|+..++..
T Consensus 1 ~~~~~~---~~~~~-p-~~~~~~a~~~~~~~~~~Y----~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~~ 68 (333)
T PRK10534 1 MIDLRS---DTVTR-P-SRAMLEAMMAAPVGDDVY----GDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALLS 68 (333)
T ss_pred Cccccc---ccCCC-C-CHHHHHHHHhccCCCccc----CCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHHH
Confidence 368887 66667 6 899999987754432211 146778899999999987 46778999999998888875
Q ss_pred HHHHhhccccccccccCCCccccccceEEEEEcCCccCCcccc--ccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 481 A~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ga--lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
.. . ++ ..|+.. ..+|...+.+ ....+.. .
T Consensus 69 ~~-----~---------------~g-d~vi~~-~~~~~~~~~~~~~~~~~~~---~------------------------ 99 (333)
T PRK10534 69 HC-----E---------------RG-EEYIVG-QAAHNYLYEAGGAAVLGSI---Q------------------------ 99 (333)
T ss_pred hc-----C---------------CC-CeeEEe-chhhhhHhcCCchHHhcCc---e------------------------
Confidence 41 1 11 244533 3333211111 0111000 0
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
...++....+ ..| .+.|++.+.+.. .+..+..+|+++-- . .|.+.
T Consensus 100 ~~~~~~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~lv~l~np-~--~G~v~- 144 (333)
T PRK10534 100 PQPIDAAADG-----------TLP------------------LDKVAAKIKPDD--IHFARTRLLSLENT-H--NGKVL- 144 (333)
T ss_pred EEeecCCCCC-----------CCC------------------HHHHHHhhcccC--cCcccceEEEEecC-C--CCeec-
Confidence 0000000000 001 144555553200 01113455666542 2 36666
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc--eeecccccCCCCCcce-EEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IACYGKLLTGGVIPLA-ATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD--ivtlgK~LggGy~Pls-Avl~s~~i~d~~~~~ 714 (817)
+.+.++++.++|++||+++|+||++. |+..+... ......-.+| +++++|++|. ++| ++++++++++.+..-
T Consensus 145 ~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~---~~G~~~~~~~~~i~~~~~~ 220 (333)
T PRK10534 145 PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSFTICLSKGLGT---PVGSLLVGNRDYIKRARRW 220 (333)
T ss_pred CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC---cccceEEcCHHHHHHHHHH
Confidence 67778999999999999999999874 43221100 0111111234 4589997653 466 477899998877421
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
. ...+..+.-+.++.+++.++|+... +.+.++. ..+++ +.+.+++.++ .-....+-++-+.+...
T Consensus 221 ~----~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~~~~~-~~r~~----l~~~L~~~g~-~~~~~~~nfv~~~~~~~ 285 (333)
T PRK10534 221 R----KMTGGGMRQAGILAAAGLYALKHNV-----ARLQEDH-DNAAW----LAEQLREAGA-DVMRQDTNMLFVRVGEE 285 (333)
T ss_pred H----HHhCCchhhHHHHHHHHHHHHHhhH-----HHHHHHH-HHHHH----HHHHHHhCCC-ccCCCCceEEEEECCch
Confidence 0 0111222334466677777765321 2222211 11232 3333333332 11122355666655321
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...+.++||+
T Consensus 286 -------~~~~~~~~l~~~gi~ 300 (333)
T PRK10534 286 -------QAAALGEYMRERNVL 300 (333)
T ss_pred -------hHHHHHHHHHHcCee
Confidence 234566777788875
No 189
>PLN02651 cysteine desulfurase
Probab=98.77 E-value=3.9e-07 Score=102.05 Aligned_cols=260 Identities=10% Similarity=0.026 Sum_probs=149.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc-cccCC-CC----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhh
Q 003472 413 PDATLQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (817)
Q Consensus 413 LGh~~hP~V~~Ai~~q~~~~-~~~~~-~~----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t 486 (817)
.+-- .+++.+|+.+.+... ..... .. ...+...++.++|+++++.. .+.+.|+++|++|+..+++.+++.+.
T Consensus 8 ~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 8 TTPI-DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 3445 899999998877542 21110 00 01234557778888888743 35799999999999999988732221
Q ss_pred ccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCc
Q 003472 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (817)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~ 566 (817)
.. ..+||.....|++ .......-.. . |. .+..++.+.
T Consensus 86 -~~----------------g~~vl~~~~~h~s-~~~~~~~~~~----~----------g~-----------~v~~v~~~~ 122 (364)
T PLN02651 86 -DK----------------KKHVITTQTEHKC-VLDSCRHLQQ----E----------GF-----------EVTYLPVKS 122 (364)
T ss_pred -CC----------------CCEEEEcccccHH-HHHHHHHHHh----c----------CC-----------EEEEEccCC
Confidence 11 2356665544443 2222111000 0 00 001111110
Q ss_pred hhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHH
Q 003472 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (817)
Q Consensus 567 ~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~L 646 (817)
... .| .+.+++.++ +++..|++..+ ....|.+.+ +++|
T Consensus 123 ~~~-----------~d------------------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I 160 (364)
T PLN02651 123 DGL-----------VD------------------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEI 160 (364)
T ss_pred CCc-----------CC------------------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHH
Confidence 000 00 245666664 23567788776 777888887 8999
Q ss_pred HHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHhhhcCCCccceeecc-
Q 003472 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHG- 723 (817)
Q Consensus 647 r~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~- 723 (817)
.++|+++|+++++|.+|+ +|.. .+-.+ ....|++++ -| ++|. ..+|++.++++..+.+...........+
T Consensus 161 ~~~~~~~g~~~~vD~a~~-~g~~--~~~~~--~~~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l~p~~~g~~~~~~~ 233 (364)
T PLN02651 161 GELCREKKVLFHTDAAQA-VGKI--PVDVD--DLGVDLMSISGHK-IYGP-KGVGALYVRRRPRVRLEPLMSGGGQERGR 233 (364)
T ss_pred HHHHHHcCCEEEEEcchh-hCCc--ccCcc--cCCCCEEEechhh-hCCC-CceEEEEEcCCCCCCCCccccCCCccCCc
Confidence 999999999999999995 4321 12222 234698866 45 6433 3478888998766554311000000000
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
...+-|..++++..++|+++.+. .+++.++.+.+.+++.+.+.
T Consensus 234 ~~GT~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~ 276 (364)
T PLN02651 234 RSGTENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLR 276 (364)
T ss_pred cCCCccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH
Confidence 12235677788888999998652 36677777778777766543
No 190
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=98.76 E-value=1.1e-06 Score=98.22 Aligned_cols=169 Identities=10% Similarity=0.037 Sum_probs=98.6
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHH
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i 707 (817)
....|...+ +++|.++|+++|+++|+|.+| +||... . ......+|++ +..|.+.|. .-+|.+++++++
T Consensus 141 ~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~~--~--~~~~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~ 210 (368)
T PRK13479 141 ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAIP--I--DIAELGIDALISSANKCIEGV-PGFGFVIARRSE 210 (368)
T ss_pred cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCcc--c--cccccCceEEEecCccccccC-CCceEEEECHHH
Confidence 344677776 899999999999999999888 565422 1 1122347876 678988653 235889999998
Q ss_pred HhhhcCCCcccee-----------ecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 708 FDSFVGDSKLKAL-----------LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 708 ~d~~~~~~~~~~~-----------~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
.+.+........+ .....|+.+..+.++..++++.+.+++..++..++.....+++.+.+ ++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~~g~ 286 (368)
T PRK13479 211 LEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGM----RALGF 286 (368)
T ss_pred HHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH----HHcCC
Confidence 8876542210000 01112456777778888889888654434455555556666555433 33332
Q ss_pred --cce-EEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 --VQR-VVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 --V~~-VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.. ....+....+.+.... + .....+...+.++||.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~L~~~gi~ 325 (368)
T PRK13479 287 EPLLDAEIQSPIIVTFHAPADP---A-YDFKEFYERLKEQGFV 325 (368)
T ss_pred cccCCchhcCceEEEEECCCCC---C-cCHHHHHHHHHHCCEE
Confidence 111 1112233444433221 1 1235678888888874
No 191
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.76 E-value=2.2e-07 Score=105.04 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=141.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... . + ...|++...+|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all-----~---------------~-GD~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALL-----G---------------P-DDLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHc-----C---------------C-CCEEEEcCCCcHH
Confidence 34567788999999998873 579999999999998887652 1 1 1367777777765
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.......+.... + ..+. +.+. .|
T Consensus 103 ~~~~~~~~~~~~--------------~--------------~~v~----------------~~d~-------~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKKG--------------C--------------FRVL----------------FVDQ-------GD------ 125 (382)
T ss_pred HHHHHHHHHhhc--------------C--------------eEEE----------------EECC-------CC------
Confidence 221111111000 0 0000 1000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
.+.+++.++ .++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++..+ ..-. -+
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-----pl 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-----PL 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 144555554 23567888865 556677665 789999999999999999999421 1111 11
Q ss_pred CCCCcee--ecccccCC--CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 679 GCVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 679 gv~PDiv--tlgK~Lgg--Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
....|++ +++|-++| + +-.|++++ ++++.+.+... ....+...+|+.|..++..|+.+.. ..++..
T Consensus 185 ~~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l~~~------~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~ 255 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEELAWW------ANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQ 255 (382)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHHHHH------HHccCCCCCHHHHHHHHcccchHHH--HHHHHH
Confidence 2235877 77998875 3 34555555 56666655311 1222445789999888777776633 123444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
+++..+.+ .++.||.|..| .|.|.|+.|+|..
T Consensus 256 ~na~~~a~--------~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 256 RNAQAIVE--------YLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHHHHHHH--------HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 44544444 34455554433 3788999999964
No 192
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.76 E-value=2.4e-06 Score=98.06 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.+++.++. ++.++++=|-.+.=-|.+. +++.+++|.++|+++ ++++|.||+..-|...+..-... ..
T Consensus 202 ~~l~~~~~~--------~~k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~ 270 (431)
T PRK15481 202 EKLERALAQ--------GARAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QT 270 (431)
T ss_pred HHHHHHHhc--------CCCEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CC
Confidence 456666642 2334444332144456665 788999999999999 99999999987662112110010 11
Q ss_pred CCcee---ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHH
Q 003472 681 VPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 681 ~PDiv---tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~ 757 (817)
.+.++ +|||.+|.| +-+|.+++.+++.+.+... ....+++.+.++..++.++|+ +.++.+.+.+..+
T Consensus 271 ~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~~~------~~~~~~~~s~~~q~a~~~~l~---~~~~~~~l~~~~~ 340 (431)
T PRK15481 271 TQRWALIRSVSKALGPD-LRLAFVASDSATSARLRLR------LNSGTQWVSHLLQDLVYACLT---DPEYQARLAQARL 340 (431)
T ss_pred CCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHHHH------HhccccCCCHHHHHHHHHHHh---CccHHHHHHHHHH
Confidence 23333 899999999 8999999999998887421 122334567777777766664 3333223333333
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+. ++.+.+.++++..-.....-|+++-+++..+ ...+...+.++||+
T Consensus 341 ~~~~~-r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~--------~~~~~~~l~~~gV~ 390 (431)
T PRK15481 341 FYAQR-RQKLARALQQYGIAIPSPGDGLNLWLPLDTD--------SQATALTLAKSGWL 390 (431)
T ss_pred HHHHH-HHHHHHHHHHcCCccccCCCeEEEEEECCCC--------HHHHHHHHHHCCcE
Confidence 33332 1234445555543111233477877777432 24566777788874
No 193
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.75 E-value=8.8e-07 Score=101.94 Aligned_cols=280 Identities=12% Similarity=0.051 Sum_probs=149.8
Q ss_pred HHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCcc
Q 003472 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501 (817)
Q Consensus 422 ~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~ 501 (817)
.+++.+++...... ..+...+|+++|+++++. +++++++||++|+..|++.+.+.+..+.+.
T Consensus 47 ~~a~~~~~~~~~~~-----~G~~~~~fe~~lA~~~g~---~~~v~~~sGt~al~~aL~al~~~~~~~~~~---------- 108 (438)
T PRK15407 47 LQNLVDASLDFWLT-----TGRFNDAFEKKLAEFLGV---RYALLVNSGSSANLLAFSALTSPKLGDRAL---------- 108 (438)
T ss_pred HHHHHHHHHhCccc-----CChhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHhhccccccCC----------
Confidence 45555555543221 134577899999999883 579999999999999998762222111111
Q ss_pred ccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhcccccccccc
Q 003472 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITF 580 (817)
Q Consensus 502 ~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~~~ 580 (817)
.....||+-..+|.+... ++...|... ..++. +. ++
T Consensus 109 --~pGd~VIv~~~t~~a~~~-~v~~~G~~p----------------------------v~vdvd~~------------~~ 145 (438)
T PRK15407 109 --KPGDEVITVAAGFPTTVN-PIIQNGLVP----------------------------VFVDVELP------------TY 145 (438)
T ss_pred --CCCCEEEECCCCcHHHHH-HHHHcCCEE----------------------------EEEecCCC------------cC
Confidence 112467777777765332 222211100 00000 00 01
Q ss_pred cCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEe
Q 003472 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (817)
Q Consensus 581 ~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~D 660 (817)
+ + | .+.+++.+. .++.+|++.+. .|. +..+++|+++|+++|+++|.|
T Consensus 146 ~-i--------d--------~~~le~~i~--------~~tkaVi~~~~-~G~-------p~dl~~I~~la~~~gi~vIeD 192 (438)
T PRK15407 146 N-I--------D--------ASLLEAAVS--------PKTKAIMIAHT-LGN-------PFDLAAVKAFCDKHNLWLIED 192 (438)
T ss_pred C-c--------C--------HHHHHHHcC--------cCCeEEEEeCC-CCC-------hhhHHHHHHHHHHCCCEEEEE
Confidence 1 0 0 144555553 25678888875 332 345899999999999999999
Q ss_pred eeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEechHHH-hhh---cCCCcc---------------
Q 003472 661 EVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVF-DSF---VGDSKL--------------- 717 (817)
Q Consensus 661 EV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~~i~-d~~---~~~~~~--------------- 717 (817)
++|+ +|-+ +.-...|---|+.+|| |.++.| .-|+++++++-. +.+ ......
T Consensus 193 aa~a-~G~~---~~g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 266 (438)
T PRK15407 193 NCDA-LGST---YDGRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRF 266 (438)
T ss_pred Cccc-hhhh---cCCeeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCccccccccccccccccc
Confidence 9995 4322 1111222233777665 556544 235666654433 221 111000
Q ss_pred --------c----e---eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC------C
Q 003472 718 --------K----A---LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR------T 776 (817)
Q Consensus 718 --------~----~---~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p------~ 776 (817)
. . ...|+.|.-+.+.+|.+++-|+.+++ ..++-+...+++.+. ++..+ .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~------~~~~R~~~a~~y~~~----L~~~~~~~~~~~ 336 (438)
T PRK15407 267 GWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPG------FIEARKANFAYLKEG----LASLEDFLILPE 336 (438)
T ss_pred ccccccccccccccccccccccccCccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH----hccCCCccccCc
Confidence 0 0 01355667789999999999999854 222222333333332 33332 1
Q ss_pred -cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 777 -VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 777 -V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
..+....-.++.|.+.+.. ......+...+.++||
T Consensus 337 ~~~~~~~~~~~~~i~~~~~~----~~~Rd~l~~~L~~~GI 372 (438)
T PRK15407 337 ATPNSDPSWFGFPITVKEDA----GFTRVELVKYLEENKI 372 (438)
T ss_pred CCCCCeeEEEEEEEEECCcC----CCCHHHHHHHHHHCCC
Confidence 1122222234455553321 1235678888888887
No 194
>PLN02509 cystathionine beta-lyase
Probab=98.73 E-value=3.4e-07 Score=105.70 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|++||+++|+||++. .+-.+.. .+...|++ .+.|.|+| |
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~gaDivv~S~tK~l~G~g- 284 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS- 284 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCCh-----hhcCCcEEEecCcccccCCC-
Confidence 4568888987 666676544 9999999999999999999983 3333332 23356887 67899986 3
Q ss_pred CcceE-EEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 696 IPLAA-TLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 696 ~PlsA-vl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
-.+++ ++++ +.+.+.+..- .......-+|..|+.++..|+.+.. ..++..+++..+.+ .+++
T Consensus 285 dv~gG~v~~~~~~l~~~~~~~------~~~~g~~l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~--------~L~~ 348 (464)
T PLN02509 285 DVMAGVLAVKGEKLAKEVYFL------QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAM--------YLSS 348 (464)
T ss_pred ccceeEEEeccHHHHHHHHHH------HHhcCCCcCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHH--------HHhc
Confidence 23444 4443 3333332110 0111122478899999998888843 23444444444433 4456
Q ss_pred CCCcceE------------------EeeeeEEEEEE
Q 003472 774 HRTVQRV------------------VALGTLCAIEL 791 (817)
Q Consensus 774 ~p~V~~V------------------rG~Glm~gIel 791 (817)
||.|..| +|-|-|+.|++
T Consensus 349 ~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 349 HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 6655544 36688999998
No 195
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.73 E-value=1.4e-06 Score=98.62 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=97.1
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee--ecccccC-CC
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GG 694 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgK~Lg-gG 694 (817)
+.++++. | +.-.|.+. +.+-+++|.++|+++++++|+||+...|--.+. ......+....+++ +++|.+| .|
T Consensus 167 ~~~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 243 (391)
T PRK08361 167 TRMIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG 243 (391)
T ss_pred cEEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH
Confidence 3444444 5 45567655 678889999999999999999999976521121 11111111123344 7899998 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ....+++.+.+...++.++| ++.+..+.+.+..+.+.+ .++.+.+.+++.
T Consensus 244 -lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~ 312 (391)
T PRK08361 244 -WRLGFVIAPEQVIKDMIKL------HAYIIGNVASFVQIAGIEAL---RSKESWKAVEEMRKEYNE-RRKLVLKRLKEM 312 (391)
T ss_pred -hhhhhhccCHHHHHHHHHH------HhhhccCCChHHHHHHHHHh---cCCcccHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 6788899999888876421 11123444566555555554 332222222222222222 222344555555
Q ss_pred CCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 775 RTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 775 p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+.+.-..-. |+++-+++...+ . ....+...+++ +||+
T Consensus 313 ~~~~~~~p~g~~~~~~~l~~~~----~-~~~~l~~~l~~~~gv~ 351 (391)
T PRK08361 313 PHIKVFEPKGAFYVFANIDETG----M-SSEDFAEWLLEKARVV 351 (391)
T ss_pred CCCeecCCCEEEEEEEECCCCC----C-CHHHHHHHHHHhCCEE
Confidence 544322333 566667775321 1 22345555554 5763
No 196
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.73 E-value=3.6e-06 Score=93.81 Aligned_cols=307 Identities=11% Similarity=-0.013 Sum_probs=159.0
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCC-cc-eEEEeCChHHHHHHHH
Q 003472 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEIAL 478 (817)
Q Consensus 401 ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~-~v~f~~SGseA~E~Al 478 (817)
.+||.+|.. .++- .|++.+++++.......+..+.+..+....+++.+....+-+. .+ .+++++++++|...++
T Consensus 2 ~~~~~~g~p--~~~~--~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 2 LFDFGTGDP--KEPT--PPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred eEeccCCCC--CCCC--CHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 567766543 2332 5788999888765432222122233555566666654433110 23 7899999999887776
Q ss_pred HHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
... .+ .| .+...|+.-+-+|.+....+. ..|..
T Consensus 78 ~~~----~~-~g-------------~~~d~Vl~~~p~y~~~~~~~~-~~g~~---------------------------- 110 (350)
T TIGR03537 78 LVF----ID-PE-------------EDRRRVIFGTPGYPVYERGAL-FAGGE---------------------------- 110 (350)
T ss_pred HHH----cC-CC-------------CCCceEEEcCCCCcchHHHHH-hcCCE----------------------------
Confidence 544 11 11 011367777777776432221 11110
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
.+++|.... +. +. -| .+.+++.+.+ ++.++++.+- ..-.|.+.
T Consensus 111 --~~~v~~~~~-----------~~----~~--~d--------~~~l~~~~~~--------~~~~i~i~~p-~NPtG~~~- 153 (350)
T TIGR03537 111 --PTAVKLKKE-----------DG----FL--LR--------LEKVEKSILE--------ETKIVWINYP-HNPTGATA- 153 (350)
T ss_pred --EEEcccCcc-----------cC----Cc--cC--------HHHHHHhhhh--------ccEEEEEeCC-CCCcCccc-
Confidence 111110000 00 00 00 1445555542 2334444432 45566554
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-cchhhhcCCCCcee--ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~~a~e~~gv~PDiv--tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
+.+-+++|.++|++||+++|+||++.-+ ..+. ......++....|+ +++|.+| .| +=+|.+++++++.+.+...
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~ 231 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKL 231 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHH
Confidence 7888999999999999999999998543 2232 11111122111233 6799986 46 6778888999888877531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
....+.+.++++.+++.+.+. .++..++.++.-+... +.+.+.++++........-|+++-+++.+.
T Consensus 232 ------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~----~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~ 298 (350)
T TIGR03537 232 ------RANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKR----DLFIEFFNKVGLEYLYPDATFYLWVKVPSG 298 (350)
T ss_pred ------HHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHH----HHHHHHHHHCCCcccCCCeEEEEEEECCCC
Confidence 112233445566666655543 2222222222222222 234444444432111112366677777543
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....+...+.++||+
T Consensus 299 ------~~~~~l~~~L~~~gv~ 314 (350)
T TIGR03537 299 ------IDAKDYALRLLENGIV 314 (350)
T ss_pred ------CCHHHHHHHHHHCCEE
Confidence 2345677888888874
No 197
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.72 E-value=3.3e-07 Score=103.79 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=140.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||.+|+..++.... +. ...|+..+.+|+|.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~-----~~----------------GD~Vl~~~~~y~~~ 104 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHHH
Confidence 4567788999999998873 579999999999998887541 11 13677777777653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
......+... .+ ..+ .+.+. .|
T Consensus 105 ~~~~~~~~~~--------------~g--------------i~v----------------~~vd~-------~d------- 126 (386)
T PRK08045 105 YRLFDSLAKR--------------GC--------------YRV----------------LFVDQ-------GD------- 126 (386)
T ss_pred HHHHHHHHhh--------------CC--------------eEE----------------EEeCC-------CC-------
Confidence 2111111100 00 000 00000 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++... -. .....
T Consensus 127 -~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~-----~~pl~ 186 (386)
T PRK08045 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-AL-----QNPLA 186 (386)
T ss_pred -HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-cc-----CCchh
Confidence 134555553 24567888875 565677765 899999999999999999998532 11 11222
Q ss_pred CCCcee--ecccccCC--CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg--Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.-.|++ .+.|-++| + +-.|++++ ++++.+.+... ....+...+|..+..++..|+-+.. ..++..+
T Consensus 187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l~~~------~~~~g~~~~p~~~~l~~rgl~tl~~--R~~~~~~ 257 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWW------ANNIGVTGGAFDSYLLLRGLRTLVP--RMELAQR 257 (386)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhccHHH--HHHHHHH
Confidence 345877 57999975 3 34566655 46665554211 1122344788888877777766532 1244445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.+ .+++||.|..| .|.|.|+.|++..
T Consensus 258 na~~la~--------~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 258 NAQAIVK--------YLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHHHHHH--------HHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 5544444 44556655544 4789999999964
No 198
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.72 E-value=3.6e-07 Score=102.67 Aligned_cols=231 Identities=13% Similarity=0.126 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.++.++||.+|+..++.+. +. + ..||.....|+|.
T Consensus 51 ~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~~l------~~---------------G-D~VI~~~~~yg~~ 105 (364)
T PRK07269 51 TKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFSVF------PV---------------G-SKVVAVRDLYGGS 105 (364)
T ss_pred CCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHh------CC---------------C-CEEEEecCCcCch
Confidence 346778899999999987 368999999999999998533 11 1 2577766666543
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
... +.... + .+.+.+ +|.. |
T Consensus 106 ~~~-~~~~~----------------------~-----~~~~~~----------------~~~~---------d------- 125 (364)
T PRK07269 106 FRW-FNQQE----------------------K-----EGRFHF----------------TYAN---------T------- 125 (364)
T ss_pred HHH-HHHHH----------------------h-----cCcEEE----------------EecC---------C-------
Confidence 210 00000 0 000000 0110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++.. +.. +...+
T Consensus 126 -~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~~--~~pl~ 185 (364)
T PRK07269 126 -EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PIY--QRPIE 185 (364)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----ccc--CCchh
Confidence 144555554 23457888875 344465554 99999999999999999999621 111 23344
Q ss_pred CCCceeec--ccccCC-CCCcceEEEe-chHHHhhhcCCCccceeec-ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 680 CVPDIACY--GKLLTG-GVIPLAATLA-TNAVFDSFVGDSKLKALLH-GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 680 v~PDivtl--gK~Lgg-Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h-~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.-.|++++ .|-++| |=+-.|++++ ++++++.+.. .+ ......+|..|+.++..|+.+.. ..++-.+
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~-------~~~~~G~~~s~~~a~l~~~~L~tL~~--r~~~~~~ 256 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY-------NLNTTGAVLSPFDSYLLMRGLKTLSL--RMERSTA 256 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH-------HHHHhCCCCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 56788854 688875 2111234555 4666665531 11 11245689999988888776632 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEE--eeeeEEEEEEe
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVV--ALGTLCAIELQ 792 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~Vr--G~Glm~gIel~ 792 (817)
++.. +.+.+++||.|..|. |.|.|++|++.
T Consensus 257 na~~--------~a~~L~~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 257 NAQE--------VVAFLKKSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHH--------HHHHHHhCCCccEEeCCCcCcEEEEEEC
Confidence 2222 445567899887775 88999999995
No 199
>PRK09082 methionine aminotransferase; Validated
Probab=98.72 E-value=1.6e-06 Score=98.00 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=153.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGseA~E~ 476 (817)
.++|+..|.. .++ . +|.+.+++.+.++... .+....+..+...++++.+.+..+... - +.+.++++|++|+..
T Consensus 31 ~~i~l~~g~~--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD-G-PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 4567666532 222 3 6888998888765421 111122344566778888877655211 1 258889999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... .. ...|+..+-+|-+ ...++...|..
T Consensus 107 ~~~~~~-----~~----------------gd~Vli~~p~y~~-~~~~~~~~g~~-------------------------- 138 (386)
T PRK09082 107 AILALV-----RP----------------GDEVIVFDPSYDS-YAPAIELAGGR-------------------------- 138 (386)
T ss_pred HHHHHc-----CC----------------CCEEEEeCCCchh-hHHHHHHcCCE--------------------------
Confidence 887651 11 1256655554443 22222222111
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
+..++.. .. |. + | .+.+++.+. .++.+|++... +.--|.
T Consensus 139 --~~~~~~~~~~------------~~-~--------d--------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~ 178 (386)
T PRK09082 139 --AVRVALQPPD------------FR-V--------D--------WQRFAAAIS--------PRTRLIILNTP-HNPSGT 178 (386)
T ss_pred --EEEEecCccc------------cc-C--------C--------HHHHHHhcC--------ccceEEEEeCC-CCCCCc
Confidence 0111110 00 00 0 0 134555543 13445666443 455566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
.. +++-+++|.++|++||+++|+||+...+--.+. ....+..++.+.++ +|||.+| .| +-+|.+++.+++++
T Consensus 179 ~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~ 256 (386)
T PRK09082 179 VW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSA 256 (386)
T ss_pred CC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHH
Confidence 55 678899999999999999999999864421122 11122223322232 7899997 57 78888999999988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC-cceEEeeeeEEE
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT-VQRVVALGTLCA 788 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~-V~~VrG~Glm~g 788 (817)
.+... .....++.++++..++.+.|+. .++..+++.+.-+...+. +.+.++++.+ +... .-|+++-
T Consensus 257 ~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~----~~~~L~~~~~~~~~~-~g~~~~~ 323 (386)
T PRK09082 257 EFRKV------HQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDR----FRAALANSRFKLLPC-EGTYFQL 323 (386)
T ss_pred HHHHH------HhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH----HHHHHHhCCCcccCC-CeeEEEE
Confidence 87532 1224456677766665555432 222223332222222232 3334444332 1122 3366777
Q ss_pred EEEec
Q 003472 789 IELQA 793 (817)
Q Consensus 789 Iel~~ 793 (817)
+++.+
T Consensus 324 ~~~~~ 328 (386)
T PRK09082 324 VDYSA 328 (386)
T ss_pred Eeccc
Confidence 78753
No 200
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.71 E-value=2.5e-07 Score=105.22 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=92.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.... .....|++ .++|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a-~~~~~~~-----~~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFA-TPLFQKP-----LELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCcc-ccccCCc-----hhhCCCEEEeeccccccCCc-
Confidence 4568888886 666677776 9999999999999999999995 2112211 12246877 55899976 5
Q ss_pred Ccce-EEEechHHHhh-hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 696 IPLA-ATLATNAVFDS-FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 696 ~Pls-Avl~s~~i~d~-~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
..+| +++++++.++. +.. +.......-+|..++.++..|+.+.. ..++..+++..+.+ .+++
T Consensus 218 ~~~GG~vv~~~~~i~~~~~~------~~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~--------~L~~ 281 (398)
T PRK07504 218 RCLGGVVLSDKAWIEEHLQD------YFRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIAD--------FLAG 281 (398)
T ss_pred cceEEEEEeCcHHHHHHHHH------HHHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHH--------HHHc
Confidence 5665 55566665432 211 01112234688999999988888743 22333444444443 3344
Q ss_pred CCCcc------------------eEEeeeeEEEEEEec
Q 003472 774 HRTVQ------------------RVVALGTLCAIELQA 793 (817)
Q Consensus 774 ~p~V~------------------~VrG~Glm~gIel~~ 793 (817)
+|.|. .-+|-|-|+.|++..
T Consensus 282 ~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 282 HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 44433 224678899999963
No 201
>PRK07049 methionine gamma-lyase; Validated
Probab=98.71 E-value=4.5e-07 Score=104.03 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||++|+..++.... . + ...||+.+-.|.|.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~-----~---------------~-Gd~Vv~~~p~Y~~~ 135 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFV-----R---------------P-GDVILHSQPLYGGT 135 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHh-----C---------------C-CCEEEEcCCCcccH
Confidence 4466678999999998873 579999999999888887652 1 1 13577777777763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
......... .. ++..+.+++. .|.
T Consensus 136 ~~~~~~~l~--------------~~-------------Gi~~v~~~~~-------------~d~---------------- 159 (427)
T PRK07049 136 ETLLAKTFR--------------NF-------------GVGAVGFADG-------------LSE---------------- 159 (427)
T ss_pred HHHHHHHHH--------------hc-------------CcEEEEEeCC-------------CCH----------------
Confidence 211100000 00 0000111100 110
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhh------cCCcEEEeeeeeccccccccc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET 673 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~------~GilLI~DEV~TGfGRtG~~~ 673 (817)
+.+++.+++. ....++.+|++|.. ..-.|.+.+ ++++.++|++ +|+++|+||+..++-..
T Consensus 160 --~~l~~~l~~~---~~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~---- 225 (427)
T PRK07049 160 --AAIGAAAEAA---AAKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ---- 225 (427)
T ss_pred --HHHHHHHHhh---ccCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccC----
Confidence 2334444321 11235778999986 666777764 4455555544 89999999996443111
Q ss_pred hhhhcCCCCcee--ecccccCC--CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCch
Q 003472 674 TADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 674 a~e~~gv~PDiv--tlgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~ 749 (817)
.-.....||+ +++|.+|| | +=+|.+++++++++.+... .......-+|..+.+++..|+.+.. ..
T Consensus 226 --~pl~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~~~------~~~~g~~ls~~~a~l~~r~L~tl~~--R~ 294 (427)
T PRK07049 226 --KPLEHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVRAL------RSAIGTQLDPHSCWMLGRSLETLVL--RM 294 (427)
T ss_pred --CccccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHHHH------HHhcCCCCCHHHHHHHHcCCChHHH--HH
Confidence 1111235776 88999994 6 6788888899888877421 1112334678888877777655422 11
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE--------------------eeeeEEEEEEec
Q 003472 750 HNIIPERRILRELWDLELIQQISSHRTVQRVV--------------------ALGTLCAIELQA 793 (817)
Q Consensus 750 ~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr--------------------G~Glm~gIel~~ 793 (817)
++..+++.. +.+.++++|.|..|. |.|.|+.|+|..
T Consensus 295 ~~~~~~a~~--------la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 295 ERANRNARA--------VAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred HHHHHHHHH--------HHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 222333333 344455566554443 568899999964
No 202
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.71 E-value=5.1e-07 Score=103.71 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=53.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|.+ ....|.+.+ +++|.++|+++|+++|+|++|. .+... .......|++ .+.|.+|| |
T Consensus 155 ~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~~GaDivv~S~tK~lgg~G- 222 (436)
T PRK07812 155 NTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLEHGADIVVHSATKYLGGHG- 222 (436)
T ss_pred CCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----CchhcCCCEEEEecccccCCCC-
Confidence 4678999997 777788888 9999999999999999999984 22221 1122347876 67899986 4
Q ss_pred CcceEEEec
Q 003472 696 IPLAATLAT 704 (817)
Q Consensus 696 ~PlsAvl~s 704 (817)
--++++++.
T Consensus 223 ~~i~G~vv~ 231 (436)
T PRK07812 223 TAIAGVIVD 231 (436)
T ss_pred CeEEEEEEc
Confidence 234444443
No 203
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.71 E-value=1.5e-06 Score=97.64 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=52.7
Q ss_pred ceeeccccccccCCCCCC-CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~-hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Al 478 (817)
.+|..++-+ .+||-+. .++|++|+++.++.+. ...+...+++++++++++. +.++++++|++|+..|+
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSV 77 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHH
Confidence 444444433 3455432 7999999999876542 2356778899999999883 57899999999999999
Q ss_pred HHH
Q 003472 479 KMA 481 (817)
Q Consensus 479 klA 481 (817)
+.+
T Consensus 78 ~al 80 (363)
T TIGR01437 78 AAV 80 (363)
T ss_pred HHH
Confidence 877
No 204
>PRK05968 hypothetical protein; Provisional
Probab=98.71 E-value=2.6e-07 Score=104.71 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=90.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CCCc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIP 697 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy~P 697 (817)
.+|++|-. .+..+ +..-+++|.++|+++|+++|+|+++... -.... . .+| .|++ ++.|.++| |-.-
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p--~-~~g--~Divv~S~tK~l~g~~~~~ 217 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRP--I-TLG--VDLVIHSASKYLGGHSDTV 217 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCc--h-hcC--CcEEEeeccccccCCCCeE
Confidence 46777865 44433 4456999999999999999999998422 22221 1 123 4776 67899986 3112
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
.|.+++++++++.+.... .+ ..+ ...+|..++.++..|+.+. .++.++.+. .+ .+.+.++++|.|
T Consensus 218 gG~i~~~~~~~~~l~~~~--~~-~~g--~~~~~~~A~~~l~~L~tl~-----~r~~~~~~~-a~----~la~~L~~~p~v 282 (389)
T PRK05968 218 AGVVAGSKEHIARINAEA--YP-YLG--AKLSPFEAWLLLRGLRTLP-----LRMKAHEAS-AL----EIARRLKAHPVV 282 (389)
T ss_pred EEEEEECHHHHHHHHHHH--HH-hCC--CCCChHHHHHHHcccCcHH-----HHHHHHHHH-HH----HHHHHHHhCCCc
Confidence 455667888777654210 00 112 3356888887777666552 244333332 22 244556677877
Q ss_pred ceEE-------------eeeeEEEEEEec
Q 003472 778 QRVV-------------ALGTLCAIELQA 793 (817)
Q Consensus 778 ~~Vr-------------G~Glm~gIel~~ 793 (817)
..|. |.|.|+.|++..
T Consensus 283 ~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 283 ERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred cEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 7665 778899999973
No 205
>PLN00175 aminotransferase family protein; Provisional
Probab=98.70 E-value=3.1e-06 Score=96.79 Aligned_cols=305 Identities=10% Similarity=0.045 Sum_probs=163.2
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC-cc-eEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW-AS-RAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~-~~-~v~f~~SGseA~E~ 476 (817)
..||+..|.- ++...+.+.+++.+.+++. ..+....+..+....+++.+.+..+-.. -+ .+++++++++|+..
T Consensus 55 ~~i~l~~G~P----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 130 (413)
T PLN00175 55 GAINLGQGFP----NFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA 130 (413)
T ss_pred CeEecCCCCC----CCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence 4566655433 2222678888988887752 1121122334555667777765433210 12 58888889999888
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
++.... .. ...|+..+-+|.+.. ..+...|..
T Consensus 131 ~~~~l~-----~~----------------gd~Vlv~~P~y~~~~-~~~~~~g~~-------------------------- 162 (413)
T PLN00175 131 TILGLI-----NP----------------GDEVILFAPFYDSYE-ATLSMAGAK-------------------------- 162 (413)
T ss_pred HHHHhC-----CC----------------CCEEEEeCCCchhHH-HHHHHcCCE--------------------------
Confidence 777541 11 135777766665422 222221111
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
+..++.. ..+ . + + .+.|++.+. .++.+|++... +.-.|.
T Consensus 163 --~~~v~~~~~~~------------~-~--------~--------~~~l~~~~~--------~~~k~i~i~~p-~NPtG~ 202 (413)
T PLN00175 163 --IKTVTLRPPDF------------A-V--------P--------EDELKAAFT--------SKTRAILINTP-HNPTGK 202 (413)
T ss_pred --EEEEECCcccC------------C-C--------C--------HHHHHHhcC--------cCceEEEecCC-CCCCCc
Confidence 0011110 000 0 0 0 244555553 13455666543 555676
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc-ee--ecccccC-CCCCcceEEEechHHHhh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv--tlgK~Lg-gGy~PlsAvl~s~~i~d~ 710 (817)
+. +.+.+++|.++|++||+++|.||+...+---+... ..+..+..+. |+ +|||.++ .| +-+|.+++++++++.
T Consensus 203 ~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~ 280 (413)
T PLN00175 203 MF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWG 280 (413)
T ss_pred CC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcc-hheeeeEeCHHHHHH
Confidence 65 78899999999999999999999997662222211 1122222222 33 7899998 68 789999999999887
Q ss_pred hcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEE
Q 003472 711 FVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAI 789 (817)
Q Consensus 711 ~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gI 789 (817)
+... ....+++.+++.-.++.++|+-- +...+++.+.-+...+ .+.+.+++++. .-.... |.++-+
T Consensus 281 l~~~------~~~~~~~~s~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L~~~g~-~~~~p~g~~f~~~ 347 (413)
T PLN00175 281 VRQA------HSFLTFATATPMQWAAVAALRAP--ESYYEELKRDYSAKKD----ILVEGLKEVGF-KVYPSSGTYFVMV 347 (413)
T ss_pred HHHH------HhhccCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH----HHHHHHHHCCC-eecCCCeeEEEEE
Confidence 7431 11235677777777776666421 1122222222222222 23344444432 112222 455666
Q ss_pred EEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 790 ELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 790 el~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
.+...+ ......|...+++ +||
T Consensus 348 ~~~~~~----~~~~~~~~~~ll~~~gV 370 (413)
T PLN00175 348 DHTPFG----FENDIAFCEYLIEEVGV 370 (413)
T ss_pred eccccC----CCCHHHHHHHHHHhCCE
Confidence 653221 1234567777764 576
No 206
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.70 E-value=5e-06 Score=94.22 Aligned_cols=173 Identities=9% Similarity=0.023 Sum_probs=100.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceee--cccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~LggGy~ 696 (817)
++.+|++.-+ +...|.+.+ +++|.++|+++|+++|+|++|. +|..- .-.+ ...+|+++ +.|.+|. .
T Consensus 159 ~~~lv~~~~~-~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K~~gp--~ 226 (403)
T TIGR01979 159 KTKLVAITHV-SNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHMP--VDVQ--ALDCDFYVFSGHKMYGP--T 226 (403)
T ss_pred CCeEEEEEcc-cccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCccc--cCcc--ccCCCEEEEecccccCC--C
Confidence 3556666655 677788887 8999999999999999999994 43211 1111 23578875 4697652 2
Q ss_pred cceEEEechHHHhhhcCCC----ccceeec-ccC-------C---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHH
Q 003472 697 PLAATLATNAVFDSFVGDS----KLKALLH-GHS-------Y---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~----~~~~~~h-~~T-------~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~ 761 (817)
-+|.+.+++++.+.+.... ....+.. ..+ | +.+..+.+++.++++.+.+.+. +++.++...+.+
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~-~~~~~~~~~l~~ 305 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGL-ENIEAHEHELTA 305 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 3678889988877653100 0000000 000 1 2456677777888888865332 455666666666
Q ss_pred HHHHHHHHHHHcCCCc---ceE--EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 762 LWDLELIQQISSHRTV---QRV--VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 762 ~l~~~l~~~l~~~p~V---~~V--rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
++.+.+ ++.+.+ ... .-++.++.+.+... ....+...+.++||
T Consensus 306 ~l~~~l----~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI 353 (403)
T TIGR01979 306 YALERL----GEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGI 353 (403)
T ss_pred HHHHHH----hcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCE
Confidence 555433 333322 111 12366777877432 12345556666676
No 207
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.69 E-value=4.3e-06 Score=95.25 Aligned_cols=315 Identities=13% Similarity=0.051 Sum_probs=170.0
Q ss_pred cccceeeccccccccCCCCCCCHHHHHHHHHHHHhccc--cCCCCCCChHHHHHHHHHHhhcCCCC-c-ceEEEeCChHH
Q 003472 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGST 472 (817)
Q Consensus 397 ~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~~-~-~~v~f~~SGse 472 (817)
.....+|+..|.-+ .++ - .|.+.+++.+.+.+... +....+..+....+++.+.+..+... - +.+++++++++
T Consensus 37 ~~~~~i~l~~g~~~-~~~-p-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~ 113 (405)
T PRK06207 37 LPGRPVDFSHGDVD-AHE-P-TPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQG 113 (405)
T ss_pred CCCCceecCCcCCC-CCC-C-CHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 33467777655332 222 3 57888888887765321 11122345566788888887655211 2 57999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..+++... .. ...|+...-+|.+.... ....|..
T Consensus 114 al~~~~~~l~-----~~----------------Gd~Vlv~~P~y~~~~~~-~~~~g~~---------------------- 149 (405)
T PRK06207 114 ALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKL-VEFFEGE---------------------- 149 (405)
T ss_pred HHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHH-HHHcCCE----------------------
Confidence 9998888661 11 13678888888763321 1111111
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.++.|-. +.+.+..++ -| .+.|++.+++ ..-+.+++-| +.-
T Consensus 150 --------v~~v~~~------------~~~~~~~~~--~d--------~~~l~~~~~~-------~~k~v~l~~P--~NP 190 (405)
T PRK06207 150 --------MVPVQLD------------YLSADKRAG--LD--------LDQLEEAFKA-------GVRVFLFSNP--NNP 190 (405)
T ss_pred --------EEEEecc------------ccCcccCCC--cC--------HHHHHHhhhh-------cCeEEEECCC--CCC
Confidence 0011100 000000000 00 2445555542 1223456667 444
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCc-ee---ecccccC-CCCCcceEEEechH
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNA 706 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PD-iv---tlgK~Lg-gGy~PlsAvl~s~~ 706 (817)
-|.+. +.+-+++|.++|++||+++|.||+..-|--.|... ....+...+| ++ +|||.++ .| +-+|.++++++
T Consensus 191 TG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~ 268 (405)
T PRK06207 191 AGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFGSPA 268 (405)
T ss_pred CCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEcCHH
Confidence 56655 78889999999999999999999997662223221 1111223344 22 7899998 78 78999999999
Q ss_pred HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-Eeeee
Q 003472 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGT 785 (817)
Q Consensus 707 i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Gl 785 (817)
+++.+.... ...+.+.+.++.+++.+.|+- .++..++..+..+.. ++.+.+.+++++.+.-. ..-|+
T Consensus 269 l~~~~~~~~------~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~----r~~l~~~L~~~~~~~~~~p~gg~ 336 (405)
T PRK06207 269 IIDRMEKLQ------AIVSLRAAGYSQAVLRTWFSE--PDGWMKDRIARHQAI----RDDLLRVLRGVEGVFVRAPQAGS 336 (405)
T ss_pred HHHHHHHHH------hHhccCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHH----HHHHHHHHhcCCCceecCCCeeE
Confidence 988875321 112333445555555555431 112222222222222 22344455555433222 22377
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 786 LCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 786 m~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++-+++.... .....+...++ ++||.
T Consensus 337 fl~~~l~~~~-----~~~~~~~~~l~~~~gV~ 363 (405)
T PRK06207 337 YLFPRLPRLA-----VSLHDFVKILRLQAGVI 363 (405)
T ss_pred EEEEeCcccC-----CCHHHHHHHHHHhcCEE
Confidence 8888875421 12345666666 56763
No 208
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.69 E-value=5.3e-07 Score=101.41 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=135.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +..+.++||++|+..++.+. . + ..+||..+..|++.
T Consensus 49 ~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll------~---------------~-Gd~Vl~~~~~y~~t 103 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF------R---------------S-GDELIVSSDLYGGT 103 (366)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh------C---------------C-CCEEEEecCCcCcH
Confidence 4567788999999999874 56789999999998776433 1 1 13688888888773
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
........ .. .|.- +..++ ..|
T Consensus 104 ~~~~~~~~--~~------------~G~~-----------v~~vd----------------~~d----------------- 125 (366)
T PRK08247 104 YRLFEEHW--KK------------WNVR-----------FVYVN----------------TAS----------------- 125 (366)
T ss_pred HHHHHHHh--hc------------cCce-----------EEEEC----------------CCC-----------------
Confidence 21110000 00 0000 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~ 678 (817)
.+.+++.+. .++.+|++|.. ..-- .+...+++|.++|+++|+++|+||++. ++ .+.. .
T Consensus 126 -~~~l~~~i~--------~~tklv~le~P-~NP~----~~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~ 184 (366)
T PRK08247 126 -LKAIEQAIT--------PNTKAIFIETP-TNPL----MQETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----L 184 (366)
T ss_pred -HHHHHHhcc--------cCceEEEEECC-CCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----h
Confidence 144555554 24568888775 3322 245669999999999999999999982 22 1111 1
Q ss_pred CCCCcee--ecccccCCC-CCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PDiv--tlgK~LggG-y~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
....|++ .++|.++|. =+-.|+++++ +++++.+... ....+...+|..+..++..|+.+.. ..++..+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~------~~~~g~~~s~~~a~l~~~~l~tl~~--r~~~~~~ 256 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY------QNAAGAVLSPFDSWLLIRGMKTLAL--RMRQHEE 256 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH------HHhcCCCCChHHHHHHHhccCcHHH--HHHHHHH
Confidence 1235776 689999861 1234556665 5666655311 1122344578777777776654422 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE--EeeeeEEEEEEe
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV--VALGTLCAIELQ 792 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V--rG~Glm~gIel~ 792 (817)
++. .+.+.++++|.|..| -|.|.|+++++.
T Consensus 257 ~a~--------~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 257 NAK--------AIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHH--------HHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 222 244556778877664 446899999985
No 209
>PRK08912 hypothetical protein; Provisional
Probab=98.65 E-value=5.3e-06 Score=93.73 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=99.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhhcCCC-Ccee--ecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCV-PDIA--CYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~~gv~-PDiv--tlgK~Lg-gG 694 (817)
+.+|.-| +.-.|.+. +.+-+++|.++|++||+++|+||++..+--.+..+ ..+..+.. .+++ +++|.+| .|
T Consensus 162 ~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 162 AVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC
Confidence 3455556 45556555 67889999999999999999999986542122111 11222221 2333 7899999 78
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ....+++.++...+++.+.|. ..++..+++.+..+...+.+ .+.++++
T Consensus 239 -lRiG~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~l----~~~L~~~ 305 (387)
T PRK08912 239 -WKVGFVCAAPPLLRVLAKA------HQFLTFTTPPNLQAAVAYGLG--KPDDYFEGMRADLARSRDRL----AAGLRRI 305 (387)
T ss_pred -ceeEEEecCHHHHHHHHHH------HhhccccCChHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 7899999999998887431 112345666666666655553 22223333444333333333 3344444
Q ss_pred CCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++ .-... -|.++.+++...+ .......+...++ ++||+
T Consensus 306 g~-~~~~~~g~~~l~~~l~~~~---~~~~~~~~~~~l~~~~gV~ 345 (387)
T PRK08912 306 GF-PVLPSQGTYFLTVDLAPLG---LAEDDVAFCRRLVEEAGVA 345 (387)
T ss_pred CC-cccCCCcceEEEecccccC---CCCCHHHHHHHHHhcCCEE
Confidence 32 11122 2566777775421 0123355666665 45763
No 210
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.65 E-value=1.1e-06 Score=100.23 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=91.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|-. ..-.|.+.. +++|.++|+++|+++|+||++..-... .-.....|++ ...|.++| |-
T Consensus 145 ~tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~------~pl~~gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 145 SPKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ------KPLEFGADLVLHSTTKYINGHSD 213 (405)
T ss_pred CCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC------CcccccCCEEEecCceeecCCCC
Confidence 3556777764 455566654 899999999999999999999521111 1111235777 45798875 21
Q ss_pred CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-.|++++ ++++.+.+... .....+..+|+.+.+++..++.++. ..+...+++..+.++ ++++
T Consensus 214 ~~~G~vv~~~~~l~~~l~~~------~~~~g~~~s~~~a~l~~~gl~tl~~--r~~~~~~na~~la~~--------L~~~ 277 (405)
T PRK08776 214 VVGGAVVARDAELHQQLVWW------ANALGLTGSPFDAFLTLRGLRTLDA--RLRVHQENADAIAAL--------LDGH 277 (405)
T ss_pred ceEEEEEeCCHHHHHHHHHH------HHhcCCCCCHHHHHHHHhhhCcHHH--HHHHHHHHHHHHHHH--------HHcC
Confidence 44566665 46666655321 1112234689999998877777633 334555555555443 3444
Q ss_pred CCcceE------------------EeeeeEEEEEEec
Q 003472 775 RTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel~~ 793 (817)
|.|..| .|.|.|+.|+|..
T Consensus 278 p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 278 AAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 443322 4789999999964
No 211
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.65 E-value=8.3e-06 Score=92.25 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=90.2
Q ss_pred EEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-h-hhhcCCCCcee---ecccccCC
Q 003472 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T-ADLLGCVPDIA---CYGKLLTG 693 (817)
Q Consensus 620 iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a-~e~~gv~PDiv---tlgK~Lgg 693 (817)
+.+| +.-| +.-.|.+. +.+-+++|.++|+++|+++|+||+..+|...|... . ....+..+.++ +++|.+|.
T Consensus 163 ~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 239 (397)
T PRK07568 163 TKAILISNP--GNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA 239 (397)
T ss_pred ceEEEEECC--CCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence 3344 4566 34456544 67779999999999999999999998885445321 1 12222234444 78999984
Q ss_pred -CCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 694 -GVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 694 -Gy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
| +.+|.+++. +++++.+... ...+++.++++..++.++|+.- ++..+++.+..+...+ .+.+.+
T Consensus 240 ~G-~R~G~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L 305 (397)
T PRK07568 240 CG-ARIGCLISKNKELIAAAMKL-------CQARLSPPTLEQIGAAALLDTP--ESYFDEVREEYKKRRD----ILYEEL 305 (397)
T ss_pred CC-cceEEEecCCHHHHHHHHHH-------hhccCCCCcHHHHHHHHHhhCC--HHHHHHHHHHHHHHHH----HHHHHH
Confidence 8 799999984 6787766321 1124556677666666665421 1122222222222222 244455
Q ss_pred HcCCCcceEEee-eeEEEEEEe
Q 003472 772 SSHRTVQRVVAL-GTLCAIELQ 792 (817)
Q Consensus 772 ~~~p~V~~VrG~-Glm~gIel~ 792 (817)
++++.+.-.... |+++-+++.
T Consensus 306 ~~~~~~~~~~p~g~~~~~~~l~ 327 (397)
T PRK07568 306 NKIPGVVCEKPKGAFYIIAKLP 327 (397)
T ss_pred hcCCCceecCCCcceEEEEecC
Confidence 555544323333 455556664
No 212
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.65 E-value=4.5e-06 Score=94.30 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++..+|+.+.+...... +..+...++++.+++..+ .+.+++++||++|...+++.+ . .
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~--~------------ 68 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D--I------------ 68 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C--C------------
Confidence 45577777777653321 235678899999999887 468999999999998888765 0 0
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC-chhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~d 577 (817)
.....||....+|.+. ..++...|.. +..++.. +.
T Consensus 69 -----~pGd~Viv~~~t~~~~-~~~~~~~G~~----------------------------~v~vd~d~~~---------- 104 (376)
T TIGR02379 69 -----QPGDEVIMPSYTFVST-ANAFVLRGAK----------------------------IVFVDIRPDT---------- 104 (376)
T ss_pred -----CCcCEEEECCCCcHHH-HHHHHHcCCE----------------------------EEEEecCCCc----------
Confidence 1123677777776653 2222221111 0011110 00
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
++ + | .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 105 --~~-~--------d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~v 149 (376)
T TIGR02379 105 --MN-I--------D--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFV 149 (376)
T ss_pred --CC-C--------C--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEE
Confidence 00 0 0 144555553 1344555 54 3 2455554 789999999999999
Q ss_pred EEeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCcc--c-------e-
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL--K-------A- 719 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~--~-------~- 719 (817)
|.|++|+ +|.. +.-...|.--|+.+|| |.++.| ...|++++. +++++.+.. .... . .
T Consensus 150 IeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 150 IEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred EEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 9999994 5432 1112334445888998 998876 467777765 677766531 1100 0 0
Q ss_pred --eecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 720 --LLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 720 --~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
...|+.|--+.+.+|.+++.|+.+++
T Consensus 225 ~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 225 TWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred eeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 01355566678889999898988854
No 213
>PRK02948 cysteine desulfurase; Provisional
Probab=98.65 E-value=1.6e-06 Score=97.69 Aligned_cols=262 Identities=11% Similarity=0.048 Sum_probs=147.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~ 474 (817)
.|||.. ..|.- .+.+.+|+.+.+........... ..+...++.+.|+++++.. -+.++|++++++|+
T Consensus 2 ~yld~a------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDYA------ATTPM-SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccCC------CCCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 467743 34666 89999999887765422110001 1244557778888888642 35789999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccc
Q 003472 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (817)
Q Consensus 475 E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (817)
..+++.+.+... ++.+.|......|.+.......... . |.
T Consensus 74 ~~~~~~~~~~~~------------------~~g~~vv~~~~~h~s~~~~~~~~~~--~------------g~-------- 113 (381)
T PRK02948 74 YLAIQSLLNALP------------------QNKKHIITTPMEHASIHSYFQSLES--Q------------GY-------- 113 (381)
T ss_pred HHHHHHHHHhcc------------------CCCCEEEECCcccHHHHHHHHHHHh--C------------CC--------
Confidence 999987732111 1123444555666544333221100 0 00
Q ss_pred ccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCC
Q 003472 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (817)
Q Consensus 555 ~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG 634 (817)
.+..++..... ..| .+.+++.+. ++...|+++-+ ....|
T Consensus 114 ---~v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 114 ---TVTEIPVDKSG-----------LIR------------------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ---EEEEEeeCCCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 00011110000 011 245555553 13456777775 77889
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CCCcceEEEechHH-Hhh
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNAV-FDS 710 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i-~d~ 710 (817)
.+.+ +++|.++|+++|+++|+|++| .||.... -.+.+ ..|++ ++.|.+|- | +|++++++++ +..
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~-~~g~~~~--~~~~~--~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~ 220 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQ-TFGKLPI--DVFEM--GIDSLSVSAHKIYGPKG---VGAVYINPQVRWKP 220 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChh-hcccccc--CcccC--CCCEEEecHHhcCCCCc---EEEEEEcCCCCCCC
Confidence 8887 889999999999999999998 4765422 12222 46776 77897652 3 5777777764 111
Q ss_pred hcC-CCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 711 FVG-DSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 711 ~~~-~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
... ......+ ..++.|+.+.+++.++|+.+.+ ..++..++.+.+.+++.+.+
T Consensus 221 ~~~~~~~~~~~---~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L 273 (381)
T PRK02948 221 VFPGTTHEKGF---RPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQI 273 (381)
T ss_pred cccCCCCCCCc---CCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 110 0000000 2345788888999999987643 13444555555665554433
No 214
>PRK14012 cysteine desulfurase; Provisional
Probab=98.65 E-value=2.6e-06 Score=96.86 Aligned_cols=209 Identities=14% Similarity=0.093 Sum_probs=121.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHH---hccccCCCCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~---~~~~~~~~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGs 471 (817)
.|+|..+ .+-- ++.+.+|+.+.+. .+........ ..+...++.++++++++.. .+.++|+++|+
T Consensus 5 iyld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTPV-DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCCC-CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6788654 3555 8999999988775 2221110000 0134557778888888743 35699999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCC
Q 003472 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (817)
Q Consensus 472 eA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (817)
+|+..+++.+.+.+.+ . ...||.-... |.+...+...-. +. |.
T Consensus 77 ~al~~~l~~l~~~~~~-~----------------gd~Vi~~~~~-~~s~~~~~~~~~----~~----------g~----- 119 (404)
T PRK14012 77 ESDNLAIKGAAHFYQK-K----------------GKHIITSKTE-HKAVLDTCRQLE----RE----------GF----- 119 (404)
T ss_pred HHHHHHHHHHHHhhcC-C----------------CCEEEEecCc-cHHHHHHHHHHH----hC----------CC-----
Confidence 9999999876222111 1 1245555554 443332221100 00 00
Q ss_pred cccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 003472 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (817)
Q Consensus 552 ~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg 631 (817)
.+..++.+... ..| .+.+++.+.+ +..+|++..+ +.
T Consensus 120 ------~~~~v~~~~~g-----------~~d------------------~~~l~~~i~~--------~t~lv~~~~~-~n 155 (404)
T PRK14012 120 ------EVTYLDPQSNG-----------IID------------------LEKLEAAMRD--------DTILVSIMHV-NN 155 (404)
T ss_pred ------EEEEEccCCCC-----------cCC------------------HHHHHHhcCC--------CCEEEEEECc-CC
Confidence 00111111000 001 2456666642 3457777776 77
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHH
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~ 708 (817)
..|.+.+ +++|.++|+++|+++|+|++|+ +|..- .+.....+|+++++ |.+|.+ .+|+++++++..
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~~~~D~~~~s~~K~~gp~--g~G~l~~~~~~~ 223 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSKLKVDLMSFSAHKIYGPK--GIGALYVRRKPR 223 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCcccCCCCEEEEehhhccCCC--ceEEEEEecCCC
Confidence 7888876 8999999999999999999995 44331 11112358999887 966532 467888887643
No 215
>PRK08068 transaminase; Reviewed
Probab=98.63 E-value=8.1e-06 Score=92.36 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=95.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-c-chhhhcCCCCc-e--eecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD-I--ACYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~-~a~e~~gv~PD-i--vtlgK~Lg-gG 694 (817)
+.++..| ..=.|.+. +.+-+++|.++|++||+++|+||+...|.-.+. . ......+..+. + -+|||.+| .|
T Consensus 170 ~v~l~~P--~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 170 LMYLNYP--NNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEEEECC--CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc
Confidence 4455557 34446655 788899999999999999999999966543332 1 11222232222 2 38999997 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++++++++.+.... .....+..+....++.++|. +.++..+++.+..+..++. +.+.++++
T Consensus 247 -lRiG~~~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~r~~----~~~~L~~~ 313 (389)
T PRK08068 247 -WRVAFAVGNESVIEAINLLQ------DHLFVSLFGAIQDAAIEALL--SDQSCVAELVARYESRRNA----FISACREI 313 (389)
T ss_pred -ceeEeEecCHHHHHHHHHHH------hhccCCCChHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHH----HHHHHHHC
Confidence 78888999999998875321 11112223334444444442 1222223333333333332 33344444
Q ss_pred CCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 775 RTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 775 p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
.+ .-.... |+++-+.+.+. .....+...+++ +||.
T Consensus 314 g~-~~~~~~g~~~~~v~~~~~------~~~~~~~~~l~~~~gi~ 350 (389)
T PRK08068 314 GW-EVDAPKGSFFAWMPVPKG------YTSEQFADLLLEKAHVA 350 (389)
T ss_pred CC-cccCCCeeEEEEEECCCC------CCHHHHHHHHHHhCCEE
Confidence 42 112333 45567777542 133567777775 5763
No 216
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.61 E-value=1e-06 Score=100.07 Aligned_cols=250 Identities=13% Similarity=0.118 Sum_probs=138.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+.+..|.+.
T Consensus 62 ~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~-----~~G----------------D~Vl~~~~~y~~~ 117 (394)
T PRK07050 62 HATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLV-----KAG----------------DDVLIPDNAYGPN 117 (394)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHh-----CCC----------------CEEEEecCCcccH
Confidence 4577788999999999873 689999999999999997662 111 2677777777642
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....... .. + .|. .. .|-+. .+
T Consensus 118 -~~~~~~~-~~--~----------~Gi-------------~v-----------------~~vd~-------~~------- 139 (394)
T PRK07050 118 -RDHGEWL-AR--D----------FGI-------------TV-----------------RFYDP-------LI------- 139 (394)
T ss_pred -HHHHHHH-HH--h----------cCe-------------EE-----------------EEECC-------CC-------
Confidence 2110000 00 0 000 00 00010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|-. ....| +...+++|.++|+++|+++|+||++. .| ..+.--..|
T Consensus 140 -~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a-~~---~~~~~l~~G 201 (394)
T PRK07050 140 -GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYS-AG---LAFKPFEHG 201 (394)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCcc-cc---cccCHHHcC
Confidence 023555553 24567888875 33333 55669999999999999999999984 22 211111123
Q ss_pred CCCcee--ecccccCCCC-CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH
Q 003472 680 CVPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE 755 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy-~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~ 755 (817)
.|++ .+.|.++||- ++.|++++ ++++++.+.... ..+| -+.+|..|..++..|+-+.. ..++..++
T Consensus 202 --aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~----~~~G--~~~~~~~a~l~lr~l~tl~~--Rl~~~~~~ 271 (394)
T PRK07050 202 --VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR----MRLG--IGVSADDCSLVLRGLPSLQV--RLAAHDRS 271 (394)
T ss_pred --CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH----HhcC--CCCCHHHHHHHHcCCCcHHH--HHHHHHHH
Confidence 4877 5799997642 56777776 566666553210 0112 23456555444332222211 12333333
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 756 RRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 756 ~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
+.++. +.++++|.|..|. |.|-++.|++..+. +.+....|+.++
T Consensus 272 a~~la--------~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---~~~~~~~~~~~l 333 (394)
T PRK07050 272 ALEVA--------EWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY---SPAQVDAFVEAL 333 (394)
T ss_pred HHHHH--------HHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC---CHHHHHHHHHcC
Confidence 33333 3444555554443 66888899986431 124455565554
No 217
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.60 E-value=3.6e-06 Score=96.99 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhccccC--C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
++++.+|+.+.+..+.... . .+...+...+++++|+++.+. +.+++++||+.|+..++... ..
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l------~~----- 159 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL------AK----- 159 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh------CC-----
Confidence 7999999999988765211 1 112245567899999999984 56888999999998888433 11
Q ss_pred ccCCCccccccceEEEEEcCCc--cCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsy--HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
...||+.++.+ +|.+ .++... . ...| +.....+
T Consensus 160 -----------GdeVIvs~~e~v~~ggs---~~i~~~--~---------~~~G-------------~~~~~v~------- 194 (454)
T TIGR00474 160 -----------GKEVIVSRGELVEIGGS---FRIPDV--M---------EQSG-------------AKLVEVG------- 194 (454)
T ss_pred -----------cCEEEECCChhhhhcch---hhHHHH--H---------HHcC-------------CEEEEeC-------
Confidence 23566666553 2211 111000 0 0000 0000000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc-ccCCC--cccCCHHHHHHHHHH
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV-HAAGG--MHMVDPLFQRILVKE 649 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~-qg~gG--~~~pp~~yl~~Lr~L 649 (817)
+++. .. .+.+++.+. .+.++|+++-.. ....| ...+ +++|.++
T Consensus 195 -------~~~~----------~~-----l~dle~aI~--------~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~l 240 (454)
T TIGR00474 195 -------TTNR----------TH-----LKDYEDAIT--------ENTALLLKVHTSNYRIVGFTEEVS----IAELVAL 240 (454)
T ss_pred -------CCCC----------CC-----HHHHHHhcC--------cCCEEEEEEccCcccccCCCCCCC----HHHHHHH
Confidence 1110 00 134555553 245666666541 12234 3455 9999999
Q ss_pred HhhcCCcEEEeeeeeccccccccc---------hhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccc
Q 003472 650 CQNRKIPVIFDEVFTGFWRLGVET---------TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (817)
Q Consensus 650 c~~~GilLI~DEV~TGfGRtG~~~---------a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~ 718 (817)
|++||+++|+|- |+|-.+... ..+......|++++| |.|||- . .|+++++++..+.+....
T Consensus 241 a~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~~i~~l~~~~--- 312 (454)
T TIGR00474 241 GREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIERLKKNP--- 312 (454)
T ss_pred HHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-e-EEEEEECHHHHHhhhhch---
Confidence 999999999995 444443321 112223357999999 999875 2 577889998887664321
Q ss_pred eeecccCCCCCHHHHHHHHHHHHHh
Q 003472 719 ALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 719 ~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
..-..--+-+..|+-.++|..+
T Consensus 313 ---l~r~lr~~k~~la~l~~~l~~~ 334 (454)
T TIGR00474 313 ---LTRALRVDKLTLAALEATLRLY 334 (454)
T ss_pred ---hHHHHhhChHHHHHHHHHHHHH
Confidence 1111223334445555566554
No 218
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.60 E-value=1.5e-05 Score=90.37 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=137.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~ 476 (817)
.+||+..|... ++. .+.+.+++.+.+... ..+....+..+....+++.+....+-.. -+.+++++++++|+..
T Consensus 31 ~~i~l~~~~~~--~~~--~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 31 GILKLTLGEPD--FTT--PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CeEEcCCCCCC--CCC--CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 56777665432 332 567888888776542 1121122233444455555554322110 1479999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
++.... .. ...|+.-..+|.+.. ......|..
T Consensus 107 ~~~~~~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~~-------------------------- 138 (391)
T PRK07309 107 SLTAIL-----EP----------------GDKVLLPAPAYPGYE-PIVNLVGAE-------------------------- 138 (391)
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCCcchH-HHHHHcCCE--------------------------
Confidence 888651 11 236777777777742 222221111
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCCc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvE-PV~qg~gG~ 635 (817)
+..++.+.. .|. + + .+.+++.+++ ..+++.+|++. | +.-.|.
T Consensus 139 --~~~~~~~~~-----------~~~-~--------d--------~~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~ 181 (391)
T PRK07309 139 --IVEIDTTEN-----------DFV-L--------T--------PEMLEKAILE-----QGDKLKAVILNYP--ANPTGV 181 (391)
T ss_pred --EEEEecCCc-----------CCc-C--------C--------HHHHHHHhhc-----cCCCeEEEEEECC--CCCCCc
Confidence 011111000 000 0 0 2456666652 23356667665 5 445566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc--ee--ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA--CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv--tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
.. +.+-+++|.++|++||+++|+||++..|--.|.. .....+ .+| ++ +++|.+| .| +-+|.+++++++++
T Consensus 182 ~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~ 257 (391)
T PRK07309 182 TY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTA 257 (391)
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh--ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHH
Confidence 55 6778999999999999999999999765222321 111111 233 33 7899998 68 78999999999998
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.+... ....+.+.++++..++.+.|+
T Consensus 258 ~~~~~------~~~~~~~~~~~~q~~~~~~l~ 283 (391)
T PRK07309 258 QLIKS------HQYLVTAATTMAQFAAVEALT 283 (391)
T ss_pred HHHHH------HhhcccCCChHHHHHHHHHHh
Confidence 87531 112233556777666665553
No 219
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.60 E-value=1.3e-06 Score=98.33 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=91.5
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCCCCcee--ecccccCC--
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTG-- 693 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-- 693 (817)
++..|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. .+|. ....+..|++ ++.|.|+|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~~-------~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLGQ-------RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCcccc-------CchhcCCcEEEecccccccCCC
Confidence 3556777765 555665554 8999999999999999999983 3321 1122346877 67899976
Q ss_pred CCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| +.+|.+++ ++++.+.+... ....+-..+|..|..++..|+.+.. ..++..+++..+. +.++
T Consensus 200 g-~~~G~v~~~~~~l~~~l~~~------~~~~g~~~~~~~a~l~~r~l~tl~~--R~~~~~~na~~la--------~~L~ 262 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAVERW------RLLAGAIPGPFEAWLAHRSLGTLGL--RFARQCANALAVA--------ELLA 262 (366)
T ss_pred C-eeEEEEEcCcHHHHHHHHHH------HHHhCCCCCHHHHHHHHhccccHHH--HHHHHHHHHHHHH--------HHHH
Confidence 5 45666776 46776655321 0111223468888877766665421 1234444444443 3455
Q ss_pred cCCCcceEE------------------eeeeEEEEEEe
Q 003472 773 SHRTVQRVV------------------ALGTLCAIELQ 792 (817)
Q Consensus 773 ~~p~V~~Vr------------------G~Glm~gIel~ 792 (817)
++|.|..|. |.|-|+.|++.
T Consensus 263 ~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~ 300 (366)
T PRK07582 263 GHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA 300 (366)
T ss_pred hCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence 667666655 68999999996
No 220
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.59 E-value=1.5e-05 Score=90.07 Aligned_cols=173 Identities=17% Similarity=0.126 Sum_probs=100.0
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.++..| +.-.|.+. +.+.+++|.++|++||+++|.||+...|--.+..-.. ...+..+.++ +|||.+| .| +
T Consensus 166 v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 241 (384)
T PRK06348 166 IILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-W 241 (384)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-c
Confidence 344555 45556655 7889999999999999999999999876211221111 1112222332 7899998 68 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++++++.+.+..- ....+++.++++-.++.++|+.. +...+++.+.-+...++ +.+.+++.+.
T Consensus 242 RiG~~v~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~r~~~----~~~~L~~~~~ 309 (384)
T PRK06348 242 RIGYVIAPDYIIETAKII------NEGICFSAPTISQRAAIYALKHR--DTIVPLIKEEFQKRLEY----AYKRIESIPN 309 (384)
T ss_pred cceeeecCHHHHHHHHHH------HHhccCCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHH----HHHHHhcCCC
Confidence 889999999988877421 23346777888888877777532 11222222222222222 3333444443
Q ss_pred cceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 777 VQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 777 V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
+.-... -|+++-+++...+ .....+...+++ .||
T Consensus 310 ~~~~~p~gg~~~~~~~~~~~-----~~~~~l~~~l~~~~gv 345 (384)
T PRK06348 310 LSLHPPKGSIYAFINIKKTG-----LSSVEFCEKLLKEAHV 345 (384)
T ss_pred ceeccCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCE
Confidence 221122 3666677775321 123456666664 575
No 221
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=98.59 E-value=1.2e-05 Score=89.86 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=96.3
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccC-CCCCcc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPL 698 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lg-gGy~Pl 698 (817)
.+|.-| +.--|.. .+.+.+++|.++|+++|+++|+||+...|-..+............+++ +++|.+| .| +-+
T Consensus 146 v~l~~p--~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~Ri 221 (356)
T PRK08056 146 LFLCTP--NNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRL 221 (356)
T ss_pred EEEeCC--cCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhh
Confidence 344456 4555664 588999999999999999999999987773223211111111122333 7899999 78 789
Q ss_pred eEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 699 AATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 699 sAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
|.+++. +++++.+... ...++.+.++.+++.+.| +.++......+..+..++ .+.+.+++.+.+
T Consensus 222 G~~v~~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l---~~~~~~~~~~~~~~~~r~----~l~~~L~~~~~~ 286 (356)
T PRK08056 222 GYLVNSDDAAVARMRRQ--------QMPWSINAFAALAGEVIL---QDRAYQQATWQWLAEEGA----RFYQALCALPLL 286 (356)
T ss_pred eeeecCCHHHHHHHHHh--------CCCCchhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH----HHHHHHhcCCCc
Confidence 989874 5676666421 233555666666665555 332222222222222222 344445555433
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+.+..+ ...+...++++||+
T Consensus 287 ~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~gI~ 317 (356)
T PRK08056 287 TVWPGRANYLFLRCERP--------DIDLQRALLTQRIL 317 (356)
T ss_pred EEcCCCCcEEEEEcCCC--------hHHHHHHHHHCCeE
Confidence 22233466655555422 24577788888874
No 222
>PRK03321 putative aminotransferase; Provisional
Probab=98.59 E-value=2.1e-06 Score=95.56 Aligned_cols=166 Identities=12% Similarity=0.117 Sum_probs=100.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhh--cCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~--~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-g 693 (817)
.+|++... +.-.|.+.+ .+++.++|++ +|+++|+||++..|-..+.. ...+...-.++++ ++||.+| .
T Consensus 147 ~~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 147 RLIFVCNP-NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred CEEEEeCC-CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34444433 566687775 4455666654 69999999999776443321 1222333346666 6899998 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +-+|.+++++++++.+.. ...+++.++++.+++.++|+.. +...+++ +.+.+. +..+.+.+.+
T Consensus 222 G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~a~~~l~~~--~~~~~~~----~~~~~~-r~~~~~~L~~ 285 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRK--------VAVPFSVNSLAQAAAIASLAAE--DELLERV----DAVVAE-RDRVRAALRA 285 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCH--HHHHHHH----HHHHHH-HHHHHHHHHH
Confidence 7 788889999999998853 1246778899988888887522 1122222 222111 1234444544
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.. .....|.++-+.+.. ....+...+.++||+
T Consensus 286 ~~~~-~~~~~g~~i~i~l~~--------~~~~~~~~l~~~gI~ 319 (352)
T PRK03321 286 AGWT-VPPSQANFVWLPLGE--------RTADFAAAAAEAGVV 319 (352)
T ss_pred CCCc-cCCCCCCEEEEeCCC--------CHHHHHHHHHHCCEE
Confidence 4432 123347887777632 235677778888874
No 223
>PRK12414 putative aminotransferase; Provisional
Probab=98.59 E-value=7.8e-06 Score=92.40 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=138.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc-cccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~-~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~ 476 (817)
.+||+..|.. .++ - .+.+.+++.+.+.+. ..+....+..+...++++.+.+..|... -+.++++++|++|...
T Consensus 30 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA-P-DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC-C-CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4677766543 243 2 688899888766542 1111123345667788888887665321 1369999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... . + ..+|+..+-+|.+.. ......|..
T Consensus 106 ~~~~l~-----~---------------~-gd~Vlv~~p~y~~~~-~~~~~~g~~-------------------------- 137 (384)
T PRK12414 106 AISALV-----H---------------P-GDEVIYFEPSFDSYA-PIVRLQGAT-------------------------- 137 (384)
T ss_pred HHHHhc-----C---------------C-CCEEEEeCCCccchH-HHHHHcCCE--------------------------
Confidence 887651 1 1 136777777775421 111111110
Q ss_pred CcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 557 NSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
...++.. +.+ ..| .+.+++.+. .++.+|++-.. +.-.|.
T Consensus 138 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~i~~p-~NPTG~ 177 (384)
T PRK12414 138 --PVAIKLSPEDF-----------RVN------------------WDEVAAAIT--------PRTRMIIVNTP-HNPSAT 177 (384)
T ss_pred --EEEEecCcccc-----------ccC------------------HHHHHhhcC--------cccEEEEEcCC-CCCCCc
Confidence 0011100 000 001 134555543 23445555332 455566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
+. +++-+++|.++|++||+++|+||+..-|--.|... ...+.+....++ +|||.+| .| +=+|.+++.+++++
T Consensus 178 ~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~ 255 (384)
T PRK12414 178 VF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMD 255 (384)
T ss_pred CC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHH
Confidence 65 67889999999999999999999986441122211 111112222232 7899997 68 78899999999988
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSI 740 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L 740 (817)
.+..- ....+++.+.++..++.+.|
T Consensus 256 ~l~~~------~~~~~~~~s~~~q~a~~~~l 280 (384)
T PRK12414 256 EIRKV------HQFMVFSADTPMQHAFAEAL 280 (384)
T ss_pred HHHHH------HhheecCCCcHHHHHHHHHh
Confidence 77431 12245666777766665554
No 224
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.58 E-value=3.5e-07 Score=99.64 Aligned_cols=125 Identities=19% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.+++ ++..-+.++..|. . .|...+ +++|.++|+++|+++|+||+|.+.-+.+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~-~--~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT-Y--YGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC-C--CCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 556677753 2233345666674 3 467665 899999999999999999999642222221111112235
Q ss_pred Ccee--ecccccCCCCCcc-eEEEechHHHh--hhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 682 PDIA--CYGKLLTGGVIPL-AATLATNAVFD--SFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 682 PDiv--tlgK~LggGy~Pl-sAvl~s~~i~d--~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
.|++ ++.|.++| ++. +.+..+++..+ .+.. .+....|.+.+.+.+++..++++++.+
T Consensus 211 ~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ttsps~~~~asl~~a~~~~~~ 272 (294)
T cd00615 211 ADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALNLHQSTSPSYLILASLDVARAMMAL 272 (294)
T ss_pred CcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHHHHCCCCcHHHHHHHHHHHHHHHHH
Confidence 6877 67898854 223 23334333211 1111 111234566778888888888888754
No 225
>PRK05957 aspartate aminotransferase; Provisional
Probab=98.58 E-value=1.2e-05 Score=91.10 Aligned_cols=175 Identities=11% Similarity=0.113 Sum_probs=97.2
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCc---eeecccccC-C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD---IACYGKLLT-G 693 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PD---ivtlgK~Lg-g 693 (817)
+.+|++-.. +.-.|.+. +++-+++|.++|++||+++|.||+...|--.+.. -.....+..+. +.+++|.+| .
T Consensus 161 ~klv~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 238 (389)
T PRK05957 161 TRAIVTISP-NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA 238 (389)
T ss_pred ceEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence 334444332 55567666 6788999999999999999999998766222211 11111122222 347999997 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC-cCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD-PQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~-~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
| +-+|.+++++++++.+... ....+.+.+.++..++..+| ++ ++..++..+..+...+ .+.+.++
T Consensus 239 G-lRiG~~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~r~----~l~~~L~ 304 (389)
T PRK05957 239 S-WRIGYMVIPIHLLEAIKKI------QDTILICPPVVSQYAALGAL---QVGKSYCQQHLPEIAQVRQ----ILLKSLG 304 (389)
T ss_pred c-ceeEEEecCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHH---hCChHHHHHHHHHHHHHHH----HHHHHHH
Confidence 8 7899999999999888531 11112233445555554444 33 2233333333333333 3444454
Q ss_pred cCCCcceE--EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 773 SHRTVQRV--VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 773 ~~p~V~~V--rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.+..+ ..-|+++-+++... .....+...++ ++||+
T Consensus 305 ~~~~~~~~~~~~gg~~~~~~~~~~------~~~~~~~~~l~~~~gv~ 345 (389)
T PRK05957 305 QLQDRCTLHPANGAFYCFLKVNTD------LNDFELVKQLIREYRVA 345 (389)
T ss_pred hcCCCccccCCCeeEEEEEeCCCC------CChHHHHHHHHHHCCEE
Confidence 44432122 12266777777543 12345666666 46763
No 226
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.58 E-value=4.3e-06 Score=94.48 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++-.+++.+.+..... ...+...+|+++|+++++. +.+++++||++|+..|++.. . . ..
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~--~-~~--------- 72 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G--I-GP--------- 72 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C--C-CC---------
Confidence 4556777776664322 1246688999999999984 57889999999999998765 1 0 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d 577 (817)
...||+-..+|.+. ..++...|... ..++. ++.+
T Consensus 73 -------Gd~Viv~~~~~~~~-~~~~~~~G~~~----------------------------v~vd~~~~~~--------- 107 (379)
T PRK11658 73 -------GDEVITPSLTWVST-LNMIVLLGATP----------------------------VMVDVDRDTL--------- 107 (379)
T ss_pred -------CCEEEECCCcHHHH-HHHHHHcCCEE----------------------------EEEecCCCcC---------
Confidence 13677777777653 22222222110 01111 0000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
..| .+.+++.+. .++.+|+ |+ .- .|...+ +++|.++|+++|+++
T Consensus 108 --~~d------------------~~~l~~~i~--------~~tkav~--~~-~~-~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 108 --MVT------------------PEAIEAAIT--------PRTKAII--PV-HY-AGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred --CcC------------------HHHHHHhcc--------cCCeEEE--Ee-CC-CCCcCC----HHHHHHHHHHcCCeE
Confidence 001 145665554 1344555 43 22 355444 789999999999999
Q ss_pred EEeeeee-ccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEec-hHHHhhhcC---CCcc-------------
Q 003472 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSFVG---DSKL------------- 717 (817)
Q Consensus 658 I~DEV~T-GfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s-~~i~d~~~~---~~~~------------- 717 (817)
|.|++|+ |.-..|+.. ..+|+ |+..|+ |.|++| ..|+++++ +++++.+.. ....
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 225 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAP 225 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCC
Confidence 9999996 332223221 12343 666665 778765 45556654 666654421 1000
Q ss_pred --ceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 718 --KALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 718 --~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
..+..|+.+.-+.+.+|.+++.|+.+++ ..++.+.+.+.+.+.
T Consensus 226 ~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~------~~~~r~~~a~~~~~~ 270 (379)
T PRK11658 226 QAEVLTPGYKYNLADINAAIALVQLAKLEA------LNARRREIAARYLQA 270 (379)
T ss_pred cceeeccccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 0011234455567788888887776633 444445555544443
No 227
>PRK07681 aspartate aminotransferase; Provisional
Probab=98.57 E-value=1.7e-05 Score=90.06 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=98.7
Q ss_pred EEEEE-EccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc--chhhhcCCCCc----eeecccccC
Q 003472 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD----IACYGKLLT 692 (817)
Q Consensus 620 iAAvI-vEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~--~a~e~~gv~PD----ivtlgK~Lg 692 (817)
+.+|+ ..| +.=-|.+. +++-+++|.++|++||+++|.||++..|--.+.. ...+..+ .+| +-+|||.+|
T Consensus 167 ~k~v~l~~P--~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 167 AKMMILNFP--GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG-AKEVGVEINSLSKSYS 242 (399)
T ss_pred ceEEEEeCC--CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC-CcccEEEEeecccccC
Confidence 34444 447 44456655 7888999999999999999999999766212221 1111111 223 238899998
Q ss_pred -CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 693 -gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.| +=+|.+++++++++.+... ....+++.+.++..++.+.|+-- +...++..+..+...+ .+.+.+
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~l~~~L 309 (399)
T PRK07681 243 LAG-SRIGYMIGNEEIVRALTQF------KSNTDYGVFLPIQKAACAALRNG--AAFCEKNRGIYQERRD----TLVDGF 309 (399)
T ss_pred Ccc-ceeEEEecCHHHHHHHHHH------HhhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHH----HHHHHH
Confidence 67 7888999999999887431 11234556666666665555321 1222222222222222 234445
Q ss_pred HcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCC
Q 003472 772 SSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGM 815 (817)
Q Consensus 772 ~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv 815 (817)
+++++ .-.. .-|.++-+++.+. .....+...+++ +||
T Consensus 310 ~~~g~-~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~~gv 348 (399)
T PRK07681 310 RTFGW-NVDKPAGSMFVWAEIPKG------WTSLSFAYALMDRANV 348 (399)
T ss_pred HHCCC-cccCCCeeeEEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 55542 1111 2377777777532 123567777777 776
No 228
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.57 E-value=1.4e-06 Score=98.53 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=53.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~ 696 (817)
++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+|++++.. -.+. -.+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-----p~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-----PLLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-----ccccCCCEEEecCceeccCCcc
Confidence 4678888876 555676665 889999999999999999999532 1222 22345688855 599976212
Q ss_pred cc-eEEEe-chHHHhhh
Q 003472 697 PL-AATLA-TNAVFDSF 711 (817)
Q Consensus 697 Pl-sAvl~-s~~i~d~~ 711 (817)
.+ |++++ ++++++.+
T Consensus 203 ~~gG~vv~~~~~~~~~~ 219 (380)
T PRK06176 203 VVAGLVTTNNEALAQEI 219 (380)
T ss_pred ceeeEEEecHHHHHHHH
Confidence 23 33555 34555544
No 229
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.54 E-value=2.9e-06 Score=97.45 Aligned_cols=162 Identities=14% Similarity=0.146 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||+.|+..++.... .. ...|++.+..|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg---~~~al~~~sG~~Ai~~al~~ll-----~~----------------GD~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEG---GIGALAVSSGQAAITYSILNIA-----SA----------------GDEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEccCchhhH
Confidence 346778899999999987 3689999999999999987552 11 13677777666553
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+...- .. .|. .+..++ ..|
T Consensus 117 -~~~~~~~~-~~------------~Gv-----------~v~~vd----------------~~d----------------- 138 (431)
T PRK08248 117 -YNLFAHTL-PK------------LGI-----------TVKFVD----------------PSD----------------- 138 (431)
T ss_pred -HHHHHHHH-Hh------------CCE-----------EEEEEC----------------CCC-----------------
Confidence 22111000 00 000 000110 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. +++.+|++|.. ..--|.+.+ +++|.++|+++|+++|+|+++. ++.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a----~~~~--~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA----SPYL--LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC----cccc--CChhH
Confidence 144555554 24668888865 555677776 7899999999999999999984 1211 11122
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s 704 (817)
...|++ .+.|.+|| | ..+|++++.
T Consensus 199 ~gaDivv~S~tK~lgg~g-~~~Gg~v~~ 225 (431)
T PRK08248 199 HGADIVVHSATKFIGGHG-TSIGGVIVD 225 (431)
T ss_pred cCCCEEEEcCccccCCCC-CceEEEEEe
Confidence 347887 46799987 5 456665553
No 230
>PLN02656 tyrosine transaminase
Probab=98.53 E-value=3.3e-05 Score=88.11 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=97.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-g 692 (817)
...+.+++-| +.-.|.+. +.+-+++|.++|++||+++|+||+...|--.++.+ ....++-...++ +|||.+ .
T Consensus 169 ~~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 169 NTVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred CceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 3456777777 34445554 67889999999999999999999997763223221 111111111233 799994 4
Q ss_pred CCCCcceEEEec--------hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLAT--------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWD 764 (817)
Q Consensus 693 gGy~PlsAvl~s--------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~ 764 (817)
.| +=+|.+++. +++.+.+... .....+.+.++.+++.++|+-- .++..++. .+.+.+. +
T Consensus 246 pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~---~~~~~~~-r 312 (409)
T PLN02656 246 PG-WRLGWFVTTDPSGSFRDPKIVERIKKY-------FDILGGPATFIQAAVPTILEQT-DESFFKKT---INILKQS-S 312 (409)
T ss_pred cc-eeEEEEEEeCcccccccHHHHHHHHHH-------HhhhcCCCHHHHHHHHHHHhcC-cHHHHHHH---HHHHHHH-H
Confidence 57 788889883 4676666321 1111234567777776666421 11122222 2223222 2
Q ss_pred HHHHHHHHcCCCcc-eEEee-eeEEEEEEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 765 LELIQQISSHRTVQ-RVVAL-GTLCAIELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 765 ~~l~~~l~~~p~V~-~VrG~-Glm~gIel~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
+.+.+.+++.+.+. .++.. |+++-+++.... ..+. +....+...+.++||+
T Consensus 313 ~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~-~~~~~~~~~~~~~~l~~~gV~ 366 (409)
T PLN02656 313 DICCDRIKEIPCITCPHKPEGSMAVMVKLNLSL-LEDISDDIDFCFKLAREESVI 366 (409)
T ss_pred HHHHHHHhhCCCCcCCcCCCeEEEEEEecchhh-cCCCCCHHHHHHHHHHhCCEE
Confidence 23445555555432 12333 577777774321 0011 1223344566677863
No 231
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.53 E-value=6e-06 Score=93.11 Aligned_cols=275 Identities=14% Similarity=0.106 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCC
Q 003472 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD 499 (817)
Q Consensus 420 ~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~ 499 (817)
+-.+++.+.+..... ....+...+++++|++.++ .+++++++||++|...++..+. . ..
T Consensus 12 ~~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~---~-~~---------- 70 (375)
T PRK11706 12 TELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD---I-QP---------- 70 (375)
T ss_pred HHHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC---C-CC----------
Confidence 335666666654322 1234667889999999887 4689999999999998887651 0 11
Q ss_pred ccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhcccccccc
Q 003472 500 TTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDI 578 (817)
Q Consensus 500 ~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~ 578 (817)
...||.-.-+|.+ +..++...|... ..++. ++.+
T Consensus 71 ------Gd~Viv~~~t~~~-~~~~~~~~G~~~----------------------------v~~d~d~~~~---------- 105 (375)
T PRK11706 71 ------GDEVIMPSYTFVS-TANAFVLRGAKI----------------------------VFVDIRPDTM---------- 105 (375)
T ss_pred ------CCEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCCcC----------
Confidence 1356666666554 333333332210 00000 0000
Q ss_pred cccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE
Q 003472 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (817)
Q Consensus 579 ~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI 658 (817)
..| .+.+++.+.+ ++.+|++ + . ..|.... +++|.++|+++|+++|
T Consensus 106 -~~d------------------~~~le~~i~~--------~tk~i~~--~-~-~~G~~~~----~~~i~~la~~~~i~vI 150 (375)
T PRK11706 106 -NID------------------ETLIEAAITP--------KTRAIVP--V-H-YAGVACE----MDTIMALAKKHNLFVV 150 (375)
T ss_pred -CcC------------------HHHHHHhcCC--------CCeEEEE--e-C-CCCCccC----HHHHHHHHHHcCCEEE
Confidence 011 2456665541 3445552 2 2 2354443 7899999999999999
Q ss_pred EeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEechHHHhhhc---CCC--cc----------ce
Q 003472 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNAVFDSFV---GDS--KL----------KA 719 (817)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~~i~d~~~---~~~--~~----------~~ 719 (817)
.|++|+ +|..-.. ...|---|+.++| |.++.|- =.+.+..++++++.+. ... +. ..
T Consensus 151 eD~a~a-~g~~~~~---~~~g~~~~~~~~Sf~~~K~l~~g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (375)
T PRK11706 151 EDAAQG-VMSTYKG---RALGTIGHIGCFSFHETKNYTAGE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTW 225 (375)
T ss_pred EECccc-cccccCC---eeeecCcCEEEEeCCCCccccccC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCccee
Confidence 999994 5542110 1112224888888 9996441 1223344566665332 110 00 00
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC--------C-cceEEeeeeEEEEE
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR--------T-VQRVVALGTLCAIE 790 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p--------~-V~~VrG~Glm~gIe 790 (817)
...|.++--+.+.+|.+++.|+.+++ ..++.+...+++.+ .+++.+ . ..+......++.+.
T Consensus 226 ~~~g~~~~~~~~~aa~~~~ql~~l~~------~~~~R~~~~~~~~~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T PRK11706 226 VDIGSSYLPSELQAAYLWAQLEAADR------INQRRLALWQRYYD----ALAPLAEAGRIELPSIPDDCKHNAHMFYIK 295 (375)
T ss_pred eecccccCcCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----HhcCCCcCCeeecCCCCCCCceeeEEEEEE
Confidence 11245555678889999898888743 22222233332222 233322 1 11122223344455
Q ss_pred EecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 791 LQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 791 l~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+.+. .....+...+.++||.
T Consensus 296 ~~~~------~~r~~l~~~L~~~gI~ 315 (375)
T PRK11706 296 LRDL------EDRSALINFLKEAGIM 315 (375)
T ss_pred ECCc------CCHHHHHHHHHHCCCC
Confidence 5332 3567788888889985
No 232
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.53 E-value=2.2e-06 Score=97.08 Aligned_cols=235 Identities=10% Similarity=0.061 Sum_probs=135.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +. ...|++.+.+|.+.
T Consensus 50 ~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all-----~~----------------Gd~Il~~~~~y~~~ 105 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALL-----GP----------------DDLIVAPHDCYGGT 105 (388)
T ss_pred CCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCchHHH
Confidence 456778899999999987 3789999999999999987652 11 12566666666542
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+..... +. ++.....+ ..|
T Consensus 106 -~~~~~~~~~---~~-----------------------gi~v~~vd--------------~~d----------------- 127 (388)
T PRK08861 106 -YRLFNTRAN---KG-----------------------DFKVQFVD--------------QSD----------------- 127 (388)
T ss_pred -HHHHHHHHh---cC-----------------------CeEEEEEC--------------CCC-----------------
Confidence 211100000 00 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhc
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~ 678 (817)
.+.+++.+. ++..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. |++. .-.
T Consensus 128 -~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~-------~pl 186 (388)
T PRK08861 128 -AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ-------KPL 186 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-------CCc
Confidence 134555553 24568888865 566677776 7899999999999999999984 2211 112
Q ss_pred CCCCcee--ecccccCCC-CCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 679 gv~PDiv--tlgK~LggG-y~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.+-.|++ .+.|-++|. =+-.|+++++ +++++.+..- ........+|..|...+..|+-+.- ..++..+
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~------~~~~G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~ 258 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW------GNCIGATGTPFDSYMTLRGIRTLGA--RMRVHEE 258 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH------HhccCCCCChHHHHHHHhcCCCHHH--HHHHHHH
Confidence 3346887 567888862 1234555553 4555544210 0111233467777766655555421 1244455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.++ +++||.|..| .|.|.|+.|++..
T Consensus 259 ~a~~~a~~--------L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 259 SAQQILAY--------LQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred HHHHHHHH--------HHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 55555443 3455544333 4788899999963
No 233
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=98.53 E-value=2.5e-06 Score=90.09 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
..+.+.+.+..+.+. +|+|||.+.+|+.. .+...... --.||+|+.....++..+....+
T Consensus 94 ~~~~l~~~l~~l~~~-------------yD~VIiD~p~~~~~------~~~~~l~~-ad~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIIDD-------------TDFLLIDAPAGLER------DAVTALAA-ADELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHhh-------------CCEEEEeCCCccCH------HHHHHHHh-CCeEEEEECCCCchHHHHHHHHH
Confidence 345666666665443 99999999876532 22222222 23589999999889988888888
Q ss_pred HHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~----~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.++..+.++.|+|+|++... ..+.+++.+ ++|+++ ||+.+...
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~--~~~~l~~Ip~~~~~~ 201 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETIL--EVPVLGVVPEDPEVR 201 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhh--CCcEEEEecCCHhHH
Confidence 88877888999999998432 134566666 899999 99877643
No 234
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.52 E-value=1e-05 Score=90.29 Aligned_cols=275 Identities=12% Similarity=0.108 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
.|.+.+|+.+.+...... .+..+...+|.+.++++.+-. -+.++++++.++|+..+++... +.
T Consensus 37 p~~~~~a~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~-----~~-------- 99 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQVN---IYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFI-----NK-------- 99 (351)
T ss_pred CHHHHHHHHHHhhcCccc---CCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhc-----CC--------
Confidence 689999988877532211 122233467778888876532 2578888888888887776551 11
Q ss_pred CCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d 577 (817)
...|+..+-+|.+.. ......|... ..++....
T Consensus 100 --------gd~Vlv~~p~y~~~~-~~~~~~g~~~----------------------------~~v~~~~~---------- 132 (351)
T PRK14807 100 --------GDVVIYPHPSFAMYS-VYSKIAGAVE----------------------------IPVKLKED---------- 132 (351)
T ss_pred --------CCEEEEeCCChHHHH-HHHHHcCCeE----------------------------EEeecCCC----------
Confidence 136777777776422 1111111110 01110000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
+. . | .+.+++.+.. .++.+|++... +.-.|...+ .+++.++|++++.++
T Consensus 133 --~~-~--------d--------~~~l~~~~~~-------~~~k~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~ 181 (351)
T PRK14807 133 --YT-Y--------D--------VGSFIKVIEK-------YQPKLVFLCNP-NNPTGSVIE----REDIIKIIEKSRGIV 181 (351)
T ss_pred --CC-C--------C--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCCCCC----HHHHHHHHHhCCCEE
Confidence 00 0 0 1445555542 23445554443 566677776 677888888888899
Q ss_pred EEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHH
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGC 733 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~ 733 (817)
|+||++..|. +.... ...+-.+.++ +|+|.+| .| +-+|.+++++++++.+.... ..+.-++++.
T Consensus 182 ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~--------~~~~~~~~~q 249 (351)
T PRK14807 182 VVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNLVK--------SPYNINSLSQ 249 (351)
T ss_pred EEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHHcc--------CCCCcCHHHH
Confidence 9999997662 33111 1111123333 7899998 78 78999999999999885321 1234466766
Q ss_pred HHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 734 AAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 734 AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
.++.+.|+ +. ..++..+.....++ .+.+.+++.+.+.-....|.++-+.+.+ ...+...++++
T Consensus 250 ~~~~~~l~---~~-~~~~~~~~~~~~r~----~l~~~l~~~~g~~~~~~~~~~~~i~~~~---------~~~~~~~l~~~ 312 (351)
T PRK14807 250 VIALKVLR---TG-VLKERVNYILNERE----RLIKELSKIPGIKVYPSKTNFILVKFKD---------ADYVYQGLLER 312 (351)
T ss_pred HHHHHHHh---HH-HHHHHHHHHHHHHH----HHHHHHHhCCCcEECcCCccEEEEEcCC---------HHHHHHHHHHC
Confidence 66666654 21 11222222222222 2334444444332223346665566642 25577778888
Q ss_pred CCC
Q 003472 814 GMH 816 (817)
Q Consensus 814 Gv~ 816 (817)
||.
T Consensus 313 gV~ 315 (351)
T PRK14807 313 GIL 315 (351)
T ss_pred CEE
Confidence 873
No 235
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.52 E-value=5.8e-06 Score=91.39 Aligned_cols=68 Identities=12% Similarity=-0.072 Sum_probs=41.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCcee--ecccccCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv--tlgK~LggG 694 (817)
..++..| ....|.+.+ +++|.++|+++|+++++|+++.++.--.........++ ..|.+ ++.|.++++
T Consensus 151 ~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p 221 (345)
T cd06450 151 MVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP 221 (345)
T ss_pred EEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC
Confidence 3444555 345676655 89999999999999999999964421111100001121 35754 678977665
No 236
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.52 E-value=6.3e-06 Score=93.82 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH--HhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~L--c~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
+.+++.+++ ....++.+|++--. ....|.+.+ ++++.++ |+++|+++|+|++|+ +|.. -...+ .
T Consensus 124 ~~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~--~id~~--~ 189 (401)
T PLN02409 124 DILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL--DFRMD--E 189 (401)
T ss_pred HHHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc--ccccc--c
Confidence 456666652 00124556666443 445688877 8888888 999999999999995 4321 11112 2
Q ss_pred CCCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccceeec----------cc---CCCCCHHHHHHHHHHHHHhc
Q 003472 680 CVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLH----------GH---SYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 680 v~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h----------~~---T~~gnPla~AAAlA~L~~l~ 744 (817)
...|++ ...|.+++. .=+|.++++++..+.+..... .++.. .. .++.+-....+..++|+++.
T Consensus 190 ~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~ 267 (401)
T PLN02409 190 WGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKS-PRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF 267 (401)
T ss_pred cCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCC-CCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH
Confidence 345776 458988764 237888999998877643211 01111 11 23555667888889999986
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHH
Q 003472 745 DPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
+.+ .+++.++.+.+.+++.+.+.
T Consensus 268 ~~G-~e~i~~~~~~l~~~l~~~L~ 290 (401)
T PLN02409 268 EEG-LENVIARHARLGEATRLAVE 290 (401)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHH
Confidence 543 35666777777777666553
No 237
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=98.51 E-value=1.4e-05 Score=89.34 Aligned_cols=160 Identities=16% Similarity=0.240 Sum_probs=98.0
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc---eeecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD---IACYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD---ivtlgK~Lg-gGy~P 697 (817)
.++..| +.-.|.+. +.+-+++|.++|++ ++++|.||++..|...+... ....-.+. +-+|||.+| .| +-
T Consensus 158 i~l~~p--~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~~~SfSK~~~~~G-lR 230 (357)
T PRK14809 158 VYLTSP--HNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAVLRTFSKAYGLAG-LR 230 (357)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEEEecchhHhcCcc-hh
Confidence 445555 56667776 55667777788865 78999999998774333211 11111123 338999998 68 79
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+.. ...+++.+++++.++.++|+ +++..++..+..+...+ .+.+.++.+.
T Consensus 231 iG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~----~l~~~L~~~~-- 293 (357)
T PRK14809 231 LGYAVVPEEWADAYAR--------VNTPFAASELACRAGLAALD---DDEHVERTVETARWARE----YIREELDAPT-- 293 (357)
T ss_pred heeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHhcCcc--
Confidence 9999999999888753 12467778888888877763 33333333333333333 2333443321
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....|.++.+++.+ ...|...+.++||.
T Consensus 294 --~~~~g~f~~~~~~~---------~~~~~~~l~~~gv~ 321 (357)
T PRK14809 294 --WESAGNFVLAEVGD---------ASAVAEAAQERGVI 321 (357)
T ss_pred --CCCCCCEEEEECCC---------HHHHHHHHHHCCEE
Confidence 23567788777632 24566667777863
No 238
>PRK09105 putative aminotransferase; Provisional
Probab=98.50 E-value=1.3e-05 Score=90.32 Aligned_cols=288 Identities=14% Similarity=0.080 Sum_probs=158.4
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+..+ ...+|- +|.+.+|+.+.+.....+ ..+...+|-+.+++..+-. -+.+++++++++|...++.
T Consensus 44 ~~i~l~~~--~~~~~~--~~~~~~a~~~~~~~~~~Y-----~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNAN--ECPLGP--SPAARDAAARSAALSGRY-----DLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCC--CCCCCC--CHHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 55665543 223442 689999998877543322 1122556777777776533 4679999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... . . ..+|+..+-+|.+... .....|.. +
T Consensus 114 ~l~----~-~----------------gd~Vli~~P~y~~~~~-~~~~~g~~----------------------------~ 143 (370)
T PRK09105 114 AFT----S-P----------------TAGLVTADPTYEAGWR-AADAQGAP----------------------------V 143 (370)
T ss_pred HHc----C-C----------------CCEEEEeCCChHHHHH-HHHHcCCe----------------------------E
Confidence 651 1 1 1367777766655322 11111110 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++....+ -.| .+.+++.. ......++..| +.-.|.+. +
T Consensus 144 ~~v~~~~~~-----------~~d------------------~~~l~~~~--------~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 144 AKVPLRADG-----------AHD------------------VKAMLAAD--------PNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred EEecCCCCC-----------CCC------------------HHHHHhcC--------CCCCEEEEeCC--CCCCCcCc-C
Confidence 011110000 000 12233221 12234566777 45567765 6
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGDS 715 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~ 715 (817)
.+.++++.+.|+ +|+++|+||++..|+. + ....+..+..++++ +|||.+| .| +-+|.+++++++++.+..
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~-~-~s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~-- 257 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSD-A-PSVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLAR-- 257 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhcc-C-cchHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHHh--
Confidence 667777777764 5999999999976643 1 11122223345654 7899998 68 789999999999888742
Q ss_pred ccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCC
Q 003472 716 KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAG 795 (817)
Q Consensus 716 ~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~ 795 (817)
. .++..+..+.+++.++|+ +++..+...+..+...+ .+.+.++++.. .-+...|.++.+++..
T Consensus 258 ------~-~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~----~l~~~L~~~g~-~~~~~~~~f~~~~~~~-- 320 (370)
T PRK09105 258 ------F-GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVRE----DTIAWLKKKGY-KCTPSQANCFMVDVKR-- 320 (370)
T ss_pred ------c-CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHH----HHHHHHHHCCC-CcCCCCCcEEEEeCCC--
Confidence 1 233455566666666553 33333333333333333 33444444432 1123445555565531
Q ss_pred CCCCcchHHHHHHHHHHcCCC
Q 003472 796 CNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 796 ~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....+...++++||.
T Consensus 321 ------~~~~l~~~L~~~gI~ 335 (370)
T PRK09105 321 ------PAKAVADAMAKQGVF 335 (370)
T ss_pred ------CHHHHHHHHHHCCcE
Confidence 225577777788874
No 239
>PRK04311 selenocysteine synthase; Provisional
Probab=98.50 E-value=1.5e-05 Score=92.19 Aligned_cols=221 Identities=15% Similarity=0.158 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHhccccC--C-CCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~--~-~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+++.+|+.+.+..+.... . .+...+...++++.|+++.| .+.+++++||+.|+..++... ..
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~G---ae~a~vv~sgtaAl~l~l~~l------~~----- 164 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTG---AEDALVVNNNAAAVLLALNAL------AA----- 164 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHh------CC-----
Confidence 6899999999887664211 1 01123455688999999988 367899999999998888543 11
Q ss_pred ccCCCccccccceEEEEEcC-Ccc-CCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 495 FLGKDTTEKCIELKVLALKG-SYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~g-syH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
...||+.++ .|| |.+. .+.. .. .. .|+..+..+
T Consensus 165 -----------GdeVIvs~~e~~~~ggs~---~i~~--~~---------~~-------------~G~~l~~v~------- 199 (464)
T PRK04311 165 -----------GKEVIVSRGELVEIGGAF---RIPD--VM---------RQ-------------AGARLVEVG------- 199 (464)
T ss_pred -----------CCEEEEcchhhhhcCcch---hhHH--HH---------HH-------------CCcEEEEEC-------
Confidence 125666655 343 3211 1100 00 00 000000000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCC--cccCCHHHHHHHHH
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRILVK 648 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg--~gG--~~~pp~~yl~~Lr~ 648 (817)
+.+. .. .+.+++.+. ++.++|+++-. .. .-| ..++ +++|.+
T Consensus 200 -------~~~~----------t~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 200 -------TTNR----------TH-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -------CCCC----------CC-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 1110 00 244555554 24567777764 22 123 3344 999999
Q ss_pred HHhhcCCcEEEeeeeeccccccc---c------chhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCcc
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGV---E------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKL 717 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~---~------~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~ 717 (817)
+|++||+++|+|.. .|-.|. + ...+......|++++| |.|||. . .|++++++++++.+....
T Consensus 245 lak~~gi~vivD~g---sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~~~~-- 317 (464)
T PRK04311 245 LGKEHGLPVVYDLG---SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLKKHP-- 317 (464)
T ss_pred HHHHcCCeEEEECC---CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHhhch--
Confidence 99999999999994 333332 1 1122223457999998 999876 2 677889999888765321
Q ss_pred ceeecccCCCCCHHHHHHHHHHHHHh
Q 003472 718 KALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 718 ~~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
..-++.-+-...++-.++|..+
T Consensus 318 ----~~r~lr~dk~~l~~l~~~l~~~ 339 (464)
T PRK04311 318 ----LKRALRVDKLTLAALEATLRLY 339 (464)
T ss_pred ----hHHHHhcchHHHHHHHHHHHHH
Confidence 1222233445555555666544
No 240
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.50 E-value=2.8e-05 Score=89.07 Aligned_cols=267 Identities=9% Similarity=-0.002 Sum_probs=146.6
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCC-------ChHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~-------~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
.|||..+ .|-- .+.|.+|+.+.+..+.... .... .+...++-+.|+++++...-+.++|++++++
T Consensus 34 iyLd~a~------~~~~-p~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 34 VYLDNAA------TSQK-PAAVLDALQDYYEEYNSNV-HRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCC-CCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 6788643 3555 7889999988776543211 0111 1224566778888877421257999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|+..+++..-.... + + ..+|+.....|++....-..+... .|.
T Consensus 106 al~~i~~~~~~~~~-~---------------~-gd~vl~~~~~~~s~~~~~~~~a~~--------------~g~------ 148 (424)
T PLN02855 106 AINLVAYTWGLANL-K---------------P-GDEVILSVAEHHSNIVPWQLVAQK--------------TGA------ 148 (424)
T ss_pred HHHHHHHHhhhhcC-C---------------C-cCEEEECCCccHHHHHHHHHHHHH--------------cCC------
Confidence 99888875300011 1 1 135776666555422111111000 000
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
.+..++..... ..| .+.+++.+. .++..|++.-+ +..
T Consensus 149 -----~v~~v~~~~~~-----------~~~------------------~~~l~~~i~--------~~t~lv~i~~~-~n~ 185 (424)
T PLN02855 149 -----VLKFVGLTPDE-----------VLD------------------VEQLKELLS--------EKTKLVATHHV-SNV 185 (424)
T ss_pred -----EEEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEeCc-ccc
Confidence 00111110000 000 144555554 14456666665 677
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEechHHHhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDS 710 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~ 710 (817)
-|.+.+ +++|.++|+++|+++|+|++| ++|..- .......+|++ .+.| +.|. .-+|.+.+++++.+.
T Consensus 186 tG~~~~----~~~I~~l~~~~g~~vivD~a~-~~g~~~----~~~~~~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~ 254 (424)
T PLN02855 186 LGSILP----VEDIVHWAHAVGAKVLVDACQ-SVPHMP----VDVQTLGADFLVASSHK-MCGP-TGIGFLWGKSDLLES 254 (424)
T ss_pred ccccCC----HHHHHHHHHHcCCEEEEEhhh-hcCCcC----CCchhcCCCEEEeeccc-ccCC-CccEEEEEchhhhhc
Confidence 788887 789999999999999999999 454321 11112347987 5689 4331 226888899988776
Q ss_pred hcCC---Cc--cceeec---------ccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 711 FVGD---SK--LKALLH---------GHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 711 ~~~~---~~--~~~~~h---------~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
+... .. ...+.. ... -+-|..+.++..++++.+.+.+. +++.++...+.+++.+.
T Consensus 255 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~-~~i~~~~~~l~~~l~~~ 324 (424)
T PLN02855 255 MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGM-DRIHEYEVELGTYLYEK 324 (424)
T ss_pred CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH
Confidence 5311 00 000000 011 12456677777788888866433 55666666676655543
No 241
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.50 E-value=4e-06 Score=94.70 Aligned_cols=146 Identities=11% Similarity=0.066 Sum_probs=84.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy- 695 (817)
++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.. +-.+.. .....|++ .++|.++|--
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4568888865 454566554 99999999999999999999842 122222 22345876 5789998520
Q ss_pred CcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
.-.|++++ ++++++.+... .....-..+|..|..++..++.+.. ..++..+++..+.+ .++++
T Consensus 203 ~~~G~~v~~~~~l~~~~~~~------~~~~g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~--------~L~~~ 266 (377)
T PRK07671 203 VVAGLVVVNSPELAEDLHFV------QNSTGGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAE--------FLNNH 266 (377)
T ss_pred ceeEEEEeCcHHHHHHHHHH------HHhhcCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHH--------HHHcC
Confidence 11223444 55666655321 0111123457777766655544422 22344455555444 33444
Q ss_pred CCcce------------------EEeeeeEEEEEE
Q 003472 775 RTVQR------------------VVALGTLCAIEL 791 (817)
Q Consensus 775 p~V~~------------------VrG~Glm~gIel 791 (817)
|.|.. -.|.|.|+.|++
T Consensus 267 ~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 267 PAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 43322 247789999999
No 242
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=98.50 E-value=8.1e-06 Score=94.47 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=72.1
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHh
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d 709 (817)
.-|+..+ +++|.++|+++|+++++|++| ++|..+......... ..|++++ .|.|+|-. .|.+++++++.+
T Consensus 192 ~~g~~~d----i~~I~~i~~~~ga~l~vDaaq-~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~~ 263 (452)
T PTZ00094 192 AYPRDID----YKRFREICDSVGAYLMADIAH-TSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR--SGLIFYRKKVKP 263 (452)
T ss_pred CCCCccC----HHHHHHHHHHcCCEEEEeccc-hhccccCCCCCCCCC-CCcEEEcCCccCCCCCC--ceEEEEecccch
Confidence 3456666 899999999999999999999 577765421111111 4798855 59887631 355666766544
Q ss_pred hhcCCCccceeecccCC--CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSY--SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~--~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
.+..... ...+ .+| +.++..+++..++|+.+.+.+. +...++...+.++|.+.
T Consensus 264 ~l~~~~~--~~~~-p~~~G~~~~~~iaal~~al~~~~~~~~-~~~~~~i~~l~~~l~~~ 318 (452)
T PTZ00094 264 DIENKIN--EAVF-PGLQGGPHNHQIAAIAVQLKEVQSPEW-KEYAKQVLKNAKALAAA 318 (452)
T ss_pred HHHHhhc--cccC-CCCCCCchHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHHHHHH
Confidence 3321110 0011 112 4577888888899999965331 22333334444444333
No 243
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=98.49 E-value=1.4e-05 Score=90.31 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=96.6
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+|++... ..--|.+.+ .+++.++++.. +++|+||++..|...+... ....-.+.++ +|+|.+| .|
T Consensus 176 ~~~v~l~~P-~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaG- 246 (380)
T PLN03026 176 PKLLFLTSP-NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAG- 246 (380)
T ss_pred CcEEEEeCC-CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCcc-
Confidence 345554443 566677775 55666666654 8999999997763222211 1111123332 8999998 78
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++++.+.... ..|.-+.++..++.++|+ +.+..+++.+.....++ .+.+.+++.+
T Consensus 247 lRiGy~~~~~~~i~~l~~~~--------~~~~~~~~~q~aa~~aL~---~~~~~~~~~~~~~~~r~----~l~~~L~~~~ 311 (380)
T PLN03026 247 LRVGYGAFPLSIIEYLWRAK--------QPYNVSVAAEVAACAALS---NPKYLEDVKNALVEERE----RLFGLLKEVP 311 (380)
T ss_pred ccceeeecCHHHHHHHHHhc--------CCCCCCHHHHHHHHHHhh---CHHHHHHHHHHHHHHHH----HHHHHHHHCC
Confidence 78888999999988774321 235566777777777763 22233333333333333 3344455554
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-....|.++-+++.+. .....+...++++||.
T Consensus 312 ~~~~~p~~~~f~~~~~~~~------~~~~~~~~~l~~~gI~ 346 (380)
T PLN03026 312 FLEPYPSDANFILCRVTSG------RDAKKLKEDLAKMGVM 346 (380)
T ss_pred CCeECCCCCeEEEEECCCC------CCHHHHHHHHHHCCeE
Confidence 3321233466767766532 2345677888888874
No 244
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.48 E-value=4.1e-05 Score=85.66 Aligned_cols=167 Identities=14% Similarity=0.235 Sum_probs=100.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.+++-| +.-.|... +.+-+++|.++|++||+++|+||+...|-..+.. -.....+-.+.++ +|||.+| .| +
T Consensus 145 v~~~~P--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~ 220 (354)
T PRK06358 145 VFLCNP--NNPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-L 220 (354)
T ss_pred EEEeCC--CCCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-h
Confidence 356777 34456654 7888999999999999999999999777332321 1112222223443 7899999 88 7
Q ss_pred cceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 697 PLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 697 PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
-+|.+++. +.+.+.+..- . ..+..+.++..++.++| ++++..++..+..+.-. +.+.+.+++++
T Consensus 221 RiG~lv~~~~~~~~~~~~~-------~-~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~r----~~l~~~L~~~~ 285 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQM-------R-EPWSINTFADLAGQTLL---DDKEYIKKTIQWIKEEK----DFLYNGLSEFK 285 (354)
T ss_pred hheeeecCCHHHHHHHHHh-------C-CCCcchHHHHHHHHHHh---ccHHHHHHHHHHHHHHH----HHHHHHHhcCC
Confidence 99989874 6777776431 1 24555666666666665 23222222222222222 23455566655
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.-....|.++-+.+.+. ..|...++++||+
T Consensus 286 ~~~~~~~~g~f~~~~~~~~---------~~~~~~l~~~gI~ 317 (354)
T PRK06358 286 GIKVYKPSVNFIFFKLEKP---------IDLRKELLKKGIL 317 (354)
T ss_pred CcEEcCCcceEEEEEcCch---------HHHHHHHHHCCeE
Confidence 4322234566666666421 5678888888874
No 245
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.48 E-value=2.7e-06 Score=87.55 Aligned_cols=77 Identities=18% Similarity=0.067 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHH
Q 003472 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (817)
+.+.+.++.+.+. +|+|||++.. +........+++.. -.+|+|+..+..+++++..+++.+
T Consensus 115 ~~l~~~l~~l~~~-------------yD~ViiD~pp-----~~~~~~~~~~~~~~-D~vilV~~~~~~~~~~~~~~~~~l 175 (204)
T TIGR01007 115 SNFKTLIETLRKY-------------FDYIIIDTPP-----IGTVTDAAIIARAC-DASILVTDAGEIKKRDVQKAKEQL 175 (204)
T ss_pred HHHHHHHHHHHhc-------------CCEEEEeCCC-----ccccchHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHH
Confidence 4455556655544 9999999953 21111222344433 478999999999999999999999
Q ss_pred HhCCCcEEEEEEccCC
Q 003472 275 KLRGYDVVAVVFEDHG 290 (817)
Q Consensus 275 ~~~~~~v~gvi~n~~~ 290 (817)
+..+.++.|+|+|++.
T Consensus 176 ~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 176 EQTGSNFLGVVLNKVD 191 (204)
T ss_pred HhCCCCEEEEEEeCcc
Confidence 9999999999999973
No 246
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.48 E-value=2.8e-05 Score=88.14 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=96.3
Q ss_pred cEEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc----cchhhh-cCCCCceeecccccC
Q 003472 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (817)
Q Consensus 619 ~iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~----~~a~e~-~gv~PDivtlgK~Lg 692 (817)
++.+|++- | +.-.|.+. +.+-+++|.++|++||+++|+||+..-|-..|. ...... .+..-.+-+|+|.+|
T Consensus 170 ~~k~i~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 170 QAKILYFNYP--SNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred cceEEEEcCC--CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 34455544 6 45556654 788899999999999999999999865522222 111110 111122347999996
Q ss_pred -CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 693 -GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 693 -gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.| +=+|.+++++++++.+.... ....++.+.++..++.++|+.. +...+++.+.-+...+. +.+.+
T Consensus 247 ~~G-lRiG~i~~~~~l~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~----~~~~L 313 (394)
T PRK05942 247 MAG-WRVGFVVGNRHIIQGLRTLK------TNLDYGIFSALQKAAETALQLP--DSYLQQVQERYRTRRDF----LIQGL 313 (394)
T ss_pred Chh-hheeeeecCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHH----HHHHH
Confidence 57 67888999999998885311 1123445556666666666432 11222333333333332 33334
Q ss_pred HcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 772 SSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 772 ~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
++++. .-+.. -|+++-+++... .....+...++ ++||+
T Consensus 314 ~~~~~-~~~~~~~~~f~~~~~~~~------~~~~~~~~~~l~~~gV~ 353 (394)
T PRK05942 314 GELGW-NIPPTKATMYLWVPCPVG------MGSTDFALNVLQKTGVV 353 (394)
T ss_pred HHCCC-eecCCCeeeEEEEECCCC------CCHHHHHHHHHHHCCEE
Confidence 44432 11222 455666776532 11233445444 67763
No 247
>PRK08363 alanine aminotransferase; Validated
Probab=98.48 E-value=2.8e-05 Score=88.28 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=92.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---eccccc-CCCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~L-ggGy~ 696 (817)
+.+++-| +.--|... +.+-+++|.++|+++|+++|.||+...+--.+..-....+.-...++ +|+|.+ ..| +
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-l 244 (398)
T PRK08363 169 AIAVINP--NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-W 244 (398)
T ss_pred EEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-c
Confidence 3445555 34456655 68889999999999999999999986542122221111121122233 889995 457 6
Q ss_pred cceEEEe--chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 697 PLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 697 PlsAvl~--s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
=+|.+++ .+++.+.+...- .. ....+++.+.++-.++.++|+- .++..+++.+..+...+ .+.+.++++
T Consensus 245 RiG~~~~~~~~~~~~~l~~~~--~~-~~~~~~~~s~~~q~~~~~~l~~--~~~~l~~~~~~~~~~~~----~l~~~L~~~ 315 (398)
T PRK08363 245 RLGYIYFVDPEGKLAEVREAI--DK-LARIRLCPNTPAQFAAIAGLTG--PMDYLEEYMKKLKERRD----YIYKRLNEI 315 (398)
T ss_pred eEEEEEEeCcHHHHHHHHHHH--HH-HhcccccCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHH----HHHHHHhcC
Confidence 7888887 565555442210 00 0112356677777777666642 12222233222222222 344455555
Q ss_pred CCcceEEeeeeEEE-EEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 775 RTVQRVVALGTLCA-IELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~g-Iel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|.+.-.+..|.++. +.+.... ..+..+.....+.++||+
T Consensus 316 ~~~~~~~p~g~~~~~~~l~~~~---~~~~~~~~~~~l~~~gV~ 355 (398)
T PRK08363 316 PGISTTKPQGAFYIFPRIEEGP---WKDDKEFVLDVLHEAHVL 355 (398)
T ss_pred CCCEecCCCeEEEEEEEeccCC---CCCHHHHHHHHHHhCCEE
Confidence 54332234454444 4564310 001222233444677763
No 248
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.48 E-value=3.4e-06 Score=95.68 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=94.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg-Gy 695 (817)
+..+|++|.. ..-.|.+. -+++|.++|+++|+++|+||+++. +. .+.-+..-.|++ ...|-|+| |=
T Consensus 146 ~TklV~lesp-sNPtg~v~----dl~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~GaDivv~S~tK~l~Gh~d 214 (394)
T PRK09028 146 NTKVLFLESP-GSITMEVQ----DVPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEMGVDISIQAATKYIVGHSD 214 (394)
T ss_pred CceEEEEECC-CCCCCcHH----HHHHHHHHHHHcCCEEEEECCccc----cc--cCCccccCceEEEEeCCeEecCCCC
Confidence 4678999987 55555444 489999999999999999999952 21 122233456887 56898976 21
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-.|+++.++++.+.+.... ...|. ..+|..|.-.+-.|+-+.- ..++..+++..+. +.+++||
T Consensus 215 ~~~G~~~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~la--------~~L~~~p 278 (394)
T PRK09028 215 VMLGTATANEKHWDQLREHS----YLMGQ--CTSPDDVYLAMRGLRTLGV--RLAQHEKNALKVA--------NWLATRP 278 (394)
T ss_pred EEEEEEECCHHHHHHHHHHH----HhcCC--CCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHH--------HHHhcCC
Confidence 33455566666655443110 01121 3467766665555544421 1234444444443 3455677
Q ss_pred CcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHH
Q 003472 776 TVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYN 809 (817)
Q Consensus 776 ~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~ 809 (817)
.|..| .|.|-|+.|++...+ .+....|+.+
T Consensus 279 ~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~----~~~~~~f~~~ 326 (394)
T PRK09028 279 EVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD----PKAVTALVEG 326 (394)
T ss_pred CccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC----HHHHHHHHHh
Confidence 66555 367889999996321 2344555544
No 249
>PRK07683 aminotransferase A; Validated
Probab=98.47 E-value=5.1e-05 Score=85.92 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc-e--eecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-I--ACYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-i--vtlgK~Lg-gGy~ 696 (817)
.+|.-| +.--|... +++-+++|.++|+++|+++|+||++..+-..+.. ...+..+.... + .+++|.+| -| +
T Consensus 165 i~i~~p--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-l 240 (387)
T PRK07683 165 VVLPYP--SNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-W 240 (387)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-c
Confidence 344445 34456655 7888999999999999999999999765211221 11222122222 2 27899999 78 7
Q ss_pred cceEEEechHHHhhhc
Q 003472 697 PLAATLATNAVFDSFV 712 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~ 712 (817)
=+|.+++++++++.+.
T Consensus 241 RiG~i~~~~~l~~~~~ 256 (387)
T PRK07683 241 RIGFLFAPSYLAKHIL 256 (387)
T ss_pred eeEEEEcCHHHHHHHH
Confidence 8999999999888875
No 250
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.47 E-value=3e-05 Score=87.42 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=95.0
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hh-hhcCCC---CceeecccccC-
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCV---PDIACYGKLLT- 692 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~-e~~gv~---PDivtlgK~Lg- 692 (817)
+.+|++- | +.-.|.+. +.+-+++|.++|++||+++|.||++..+-..+... .. ..-+.. -.+.+|||.+|
T Consensus 165 ~~~v~i~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~ 241 (383)
T TIGR03540 165 AKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNM 241 (383)
T ss_pred ceEEEEeCC--CCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCC
Confidence 4455554 6 45556665 88899999999999999999999997552222111 11 111111 22348999997
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+..- ....+.+.+.+..+++.++|+-. ++..+++.+..+...+ .+.+.++
T Consensus 242 ~G-lRiG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~----~~~~~L~ 308 (383)
T TIGR03540 242 TG-WRIGMAVGNADLIAGLGKV------KTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRD----LLLEALK 308 (383)
T ss_pred cc-ceeeEEeCCHHHHHHHHHH------HHhcccCCChHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57 6788899999998877421 01112233445555555554321 1222222222222222 3444555
Q ss_pred cCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++.+ .-+.. -|+++-+++.+. .....+...++ ++||
T Consensus 309 ~~~~-~~~~~~~~~~~~~~l~~~------~~~~~~~~~ll~~~gi 346 (383)
T TIGR03540 309 KIGI-DVEKPKATFYVWVPVPEG------YTSAEFAARLLEETGV 346 (383)
T ss_pred hCCC-EecCCCcceEEEEECCCC------CCHHHHHHHHHHHCCE
Confidence 5542 11122 366677777532 12355666665 4676
No 251
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.47 E-value=5.1e-06 Score=94.21 Aligned_cols=252 Identities=11% Similarity=0.034 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++....|+++|+++-+. +..+++.||.+|+..++...+ +. ...||..+..|.+.
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all-----~~----------------GD~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFL-----SP----------------GDHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhc-----CC----------------CCEEEEccCCcHHH
Confidence 4578888999999987552 457788889999999886542 11 13678878888764
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
....-.+. . ..|.- +.|-+.+ +
T Consensus 117 ~~l~~~~l--~------------~~Gi~------------------------------v~~vd~~-------~------- 138 (395)
T PRK05967 117 RHFCDTML--K------------RLGVE------------------------------VEYYDPE-------I------- 138 (395)
T ss_pred HHHHHHHH--H------------hcCeE------------------------------EEEeCCC-------C-------
Confidence 32110110 0 00000 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.++ .+..+|++|.. ...-+ ...-+++|.++|+++|+++|+|+++... ..+.-..
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~p------~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWATP------LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccCc------eecChhH
Confidence 134555554 24678999965 34333 4445999999999999999999999532 1122233
Q ss_pred CCCcee--ecccccCC-CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHH
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPER 756 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~ 756 (817)
.-.|++ ...|-++| |=+-.|+++.++++.+.+.... ...|. ..+|..|...+..|+-+.- ..++..+++
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~da~l~~rgl~Tl~l--R~~~~~~na 270 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLGL--CAGPDDTYQILRGLRTMGI--RLEHHRKSA 270 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH----HHcCC--CCCHHHHHHHHcCcccHHH--HHHHHHHHH
Confidence 346777 57899887 2244566667776655442110 01121 2467766665555544421 123444455
Q ss_pred HHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 757 RILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 757 ~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
..+.+ .+++||.|..| .|.|.|+.|++.... ..+.+....|+.++
T Consensus 271 ~~lA~--------~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-~~~~~~~~~f~~~l 333 (395)
T PRK05967 271 LEIAR--------WLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGP-EKGKAKAHAFLDAL 333 (395)
T ss_pred HHHHH--------HHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCC-cccHHHHHHHHHhC
Confidence 44443 34555655433 367889999996330 01124455555443
No 252
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=98.47 E-value=1.3e-05 Score=90.08 Aligned_cols=290 Identities=8% Similarity=0.011 Sum_probs=162.9
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
..||+..+ .+.+|. +|.+++++.+.+.....+. ..-..+|-+.|+++.+-. .+.++++++++|++..+++
T Consensus 30 ~~i~l~~n--en~~~~--~~~v~~a~~~~~~~~~~Yp-----~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASN--ENPFGC--SPRVLDELQKSWLDHALYP-----DGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCC--CCCCCC--CHHHHHHHHHHHHhcCcCC-----CCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 66777653 334554 5899999988765533221 122345666666665532 3679999999999888887
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
... .. ...|+..+-+|.+-...+ ...|.. +
T Consensus 100 ~l~-----~~----------------gd~vlv~~P~y~~~~~~~-~~~g~~----------------------------v 129 (366)
T PRK01533 100 AVL-----KA----------------GDNIVTAGATFPQYRHHA-IIEGCE----------------------------V 129 (366)
T ss_pred Hhc-----CC----------------CCEEEEcCCcHHHHHHHH-HHcCCE----------------------------E
Confidence 651 11 125666666665422111 111100 0
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
..++..+. ..| .+.+++.+.+ ..-..+|.-| +.--|.+. +
T Consensus 130 ~~v~~~~~------------~~d------------------~~~l~~~~~~-------~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 130 KEVALNNG------------VYD------------------LDEISSVVDN-------DTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEeecCCC------------CcC------------------HHHHHHHhCc-------CCcEEEEeCC--CCCCCCCc-C
Confidence 11111000 001 2445555541 1223455666 55567766 6
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-+++|.++|++++ ++|+||+...|-.-+.. -......-.+.++ +|||.+| .| +-+|.+++.+++++.+...
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~ 247 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVV 247 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHh
Confidence 777888999998877 57789998766221211 1111112123333 7899998 67 6788899999999887531
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
-.+|.-+.++.+++.++|+ +.++.+.+.+......+ .+.+.++...+ .-....|.++-+.+. +
T Consensus 248 --------~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~----~~~~~l~~~g~-~~~~~~~nf~~~~~~-~ 310 (366)
T PRK01533 248 --------RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLR----QYESFCKENEI-PFYQSQTNFIFLPVE-N 310 (366)
T ss_pred --------cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHH----HHHHHHHhCCC-ccCCCcCcEEEEeCC-C
Confidence 1357788888888888873 33333333332222222 23344444432 222345777777763 1
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
...+...++++||+
T Consensus 311 --------~~~~~~~l~~~GI~ 324 (366)
T PRK01533 311 --------GGEIYEACAHAGFI 324 (366)
T ss_pred --------HHHHHHHHHHCCcE
Confidence 14577888899984
No 253
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.46 E-value=2.6e-05 Score=87.27 Aligned_cols=173 Identities=13% Similarity=0.009 Sum_probs=97.9
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhh--cCC--CCcee--eccccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGC--VPDIA--CYGKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~--~gv--~PDiv--tlgK~L 691 (817)
++.+|++... +.-.|... +.+.+++|.++|+++|+++|.||++..|...+.... ... .+. ..-|+ +|+|.+
T Consensus 142 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSP-GNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCC-CCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc
Confidence 4566766654 56667666 678899999999999999999999976643333211 110 011 11233 899998
Q ss_pred C-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
| .| +=+|.+++++++++.+... ....++..+.++.+++.++| +++...+++.+.-+...+ .+.+.
T Consensus 220 ~~~G-~R~G~~i~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~----~~~~~ 285 (357)
T TIGR03539 220 NLAG-YRAGFVAGDPALVAELLTV------RKHAGLMVPAPVQAAMVAAL---GDDGHVAEQKARYAARRA----QLKPA 285 (357)
T ss_pred CCCc-eeEEEEecCHHHHHHHHHH------HhhcccCCCHHHHHHHHHHc---CCHHHHHHHHHHHHHHHH----HHHHH
Confidence 5 46 6788899999988877421 12234556677666666655 332222222222222222 23344
Q ss_pred HHcCCC-cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRT-VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~-V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+++++. +....| |.++-+++.. ....+...+.++||+
T Consensus 286 L~~~g~~~~~p~~-~~~~~~~~~~--------~~~~~~~~l~~~gV~ 323 (357)
T TIGR03539 286 LEKAGFRIDHSEA-GLYLWATRGE--------DAWDTVDRLAELGIL 323 (357)
T ss_pred HHHcCCCCcCCCc-cEEEEEECCC--------CHHHHHHHHHhCCEE
Confidence 444432 111222 5555555421 224566777788873
No 254
>PRK09148 aminotransferase; Validated
Probab=98.46 E-value=5.6e-05 Score=86.17 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=98.9
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCc----eeecccccC-C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPD----IACYGKLLT-G 693 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PD----ivtlgK~Lg-g 693 (817)
...++.-| +.-.|.+. +++-+++|.++|++||+++|.||+...|---+..+. ...+.-.+| +-+|||.+| -
T Consensus 167 ~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p 243 (405)
T PRK09148 167 IALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA 243 (405)
T ss_pred eEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCc
Confidence 34555556 34456655 788899999999999999999999976521122111 111111233 237899998 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +=+|.+++++++++.+..- ....+++.++++..++.+.|+- .++..+++.+..+...+. +.+.+++
T Consensus 244 G-lR~G~~v~~~~~i~~l~~~------~~~~~~~~~~~~q~~~~~~L~~--~~~~~~~~~~~~~~~r~~----l~~~L~~ 310 (405)
T PRK09148 244 G-WRMGFAVGNERLIAALTRV------KSYLDYGAFTPIQVAATAALNG--PQDCIAEMRELYKKRRDV----LVESFGR 310 (405)
T ss_pred c-hheeeeeCCHHHHHHHHHH------HHHhccCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 8 7888899999999887431 1223455566666666665531 122223333333333332 3344444
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++.....-.-|+++-+++...- .. .....+...++ ++||
T Consensus 311 ~~~~~~~p~~g~f~~~~l~~~~--~~-~~~~~~~~~ll~~~gV 350 (405)
T PRK09148 311 AGWDIPPPAASMFAWAPIPEAF--RH-LGSLEFSKLLVEKADV 350 (405)
T ss_pred cCCccCCCCeeEEEEEECCCcc--CC-CCHHHHHHHHHHhCCE
Confidence 4431111224677777775421 00 11244555555 5676
No 255
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.46 E-value=6.7e-06 Score=94.26 Aligned_cols=247 Identities=11% Similarity=0.066 Sum_probs=138.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
++...+|+++|+++.+. ..++.++||..|+..++.... +.| ..||+....|.|...
T Consensus 60 nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all-----~~G----------------D~VI~~~~~Y~~T~~ 115 (432)
T PRK06702 60 NPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNIC-----SSG----------------DHLLCSSTVYGGTFN 115 (432)
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhc-----CCC----------------CEEEECCCchHHHHH
Confidence 67888999999999873 578999999999999997552 111 368888888876432
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
. +... . ...|. ++.|-|. ..| .
T Consensus 116 ~-~~~~---l----------~~~Gi------------------------------~v~~vd~------~~d--------~ 137 (432)
T PRK06702 116 L-FGVS---L----------RKLGI------------------------------DVTFFNP------NLT--------A 137 (432)
T ss_pred H-HHHH---H----------HHCCC------------------------------EEEEECC------CCC--------H
Confidence 1 1100 0 00000 0001110 000 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.+++.|. .+..+|++|.. ..-.+.++. +++|.++|+++|+++|+|++.. ....++-+..-
T Consensus 138 ~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~G 198 (432)
T PRK06702 138 DEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEHG 198 (432)
T ss_pred HHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhcC
Confidence 44666664 24568889985 333344444 9999999999999999999972 23344444445
Q ss_pred Ccee--ecccccCCCCCcceEEEe-chH----------HHh---------hhcCCC-------ccceeecccCCCCCHHH
Q 003472 682 PDIA--CYGKLLTGGVIPLAATLA-TNA----------VFD---------SFVGDS-------KLKALLHGHSYSAHALG 732 (817)
Q Consensus 682 PDiv--tlgK~LggGy~PlsAvl~-s~~----------i~d---------~~~~~~-------~~~~~~h~~T~~gnPla 732 (817)
.||+ .+.|-++|----++++++ +.. +.+ ...+.. ........+.+..+|..
T Consensus 199 ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~ 278 (432)
T PRK06702 199 ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFN 278 (432)
T ss_pred CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHH
Confidence 7876 678988872123443333 221 110 000000 00001123345778999
Q ss_pred HHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH--cCCCcc----------eE-EeeeeEEEEEEec
Q 003472 733 CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS--SHRTVQ----------RV-VALGTLCAIELQA 793 (817)
Q Consensus 733 ~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~--~~p~V~----------~V-rG~Glm~gIel~~ 793 (817)
|..++..|+.+.. ..++..+++..+.+.|... ..++ .||... .. +|.|.|+.|+|..
T Consensus 279 a~l~~rgL~Tl~l--R~~r~~~Na~~la~~L~~~--p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~ 348 (432)
T PRK06702 279 AYISNIGLETLHL--RMERHSENALAVAKWLADH--ERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG 348 (432)
T ss_pred HHHHHhccCcHHH--HHHHHHHHHHHHHHHHHhC--CCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 9888877766532 2344455666655533321 0010 222211 11 5788999999973
No 256
>PRK08175 aminotransferase; Validated
Probab=98.45 E-value=3.8e-05 Score=87.13 Aligned_cols=190 Identities=11% Similarity=0.083 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.+++.+++ ...++.++++... +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.|... .....+
T Consensus 152 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~-~~~~~~~ 223 (395)
T PRK08175 152 NELERAIRE-----SYPKPKMMILGFP-SNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA-PSIMQVP 223 (395)
T ss_pred HHHHHHHhh-----ccCCceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC-cchhcCC
Confidence 456666652 1234566666532 45556655 78888999999999999999999996551112211 111111
Q ss_pred -CCce----eecccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 681 -VPDI----ACYGKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 681 -~PDi----vtlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
.+|. -+++|.+| .| +=+|.+++++++++.+... .....++.+.....++.+.|+- .+...+++.+
T Consensus 224 ~~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~ 294 (395)
T PRK08175 224 GAKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARI------KSYHDYGTFTPLQVAAIAALEG--DQQCVRDIAE 294 (395)
T ss_pred CcccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHH------HhhcccCCCcHHHHHHHHHHhC--cHHHHHHHHH
Confidence 1342 37899996 56 6678899999999887531 1112345556666666666532 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
.-+...+ .+.+.+++.++....-.-|.++-+++.+.- .......+...++ +.||
T Consensus 295 ~~~~~~~----~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~---~~~~~~~~~~~l~~~~gv 349 (395)
T PRK08175 295 QYKRRRD----VLVKGLHEAGWMVEMPKASMYVWAKIPEPY---AAMGSLEFAKKLLNEAKV 349 (395)
T ss_pred HHHHHHH----HHHHHHHHcCCcccCCCEEEEEEEECCccc---CCCCHHHHHHHHHHhCCE
Confidence 2222222 233444444431111224888888886541 0012355555555 5676
No 257
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.45 E-value=4.7e-05 Score=85.90 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
++-.+++.+.+...... ..+...+|.+.++++++. +..++++||++|+..+++.. . . ..
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~-~--~~--------- 68 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G-V--GP--------- 68 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C-C--CC---------
Confidence 44567777777653221 235567899999999884 46777889999999998766 1 0 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC-Cchhhhccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d 577 (817)
...||+...+|++.. .++...|... ..++. |..+
T Consensus 69 -------Gd~Viv~~~~~~~~~-~~~~~~G~~~----------------------------~~~~~~~~~~--------- 103 (380)
T TIGR03588 69 -------GDRVWTTPITFVATA-NCALYCGAKV----------------------------DFVDIDPDTG--------- 103 (380)
T ss_pred -------CCEEEeCCcchHHHH-HHHHHcCCEE----------------------------EEEecCCCcC---------
Confidence 135777777666532 2221111100 00110 0000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
..| .+.+++.+.+. ...++.+|++ + ...|...+ +++|.++|++||+++
T Consensus 104 --~~d------------------~~~l~~~i~~~----~~~~t~~v~~--~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 --NID------------------EDALEKKLAAA----KGKLPKAIVP--V--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred --CcC------------------HHHHHHHhhcc----cCCCceEEEE--e--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 011 25566666521 1124455552 2 12355444 899999999999999
Q ss_pred EEeeeeeccccccccchhhhcCC--CCceeecc----cccCCCCCcceEEEec-hHHHhhhcC---CCc---c-------
Q 003472 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFVG---DSK---L------- 717 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv--~PDivtlg----K~LggGy~PlsAvl~s-~~i~d~~~~---~~~---~------- 717 (817)
|.|++|+ +|-+ +.-...|. --|++++| |.++.| ..|+++.. +++.+.+.. ... .
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccc
Confidence 9999996 4322 11122233 34998877 888654 34445543 555554321 000 0
Q ss_pred ---c---eeecccCCCCCHHHHHHHHHHHHHh
Q 003472 718 ---K---ALLHGHSYSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 718 ---~---~~~h~~T~~gnPla~AAAlA~L~~l 743 (817)
. ....|..+.-+.+.++.+++.|+.+
T Consensus 226 ~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l 257 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKL 257 (380)
T ss_pred cCcceeeeeccccccCccHHHHHHHHHHHHHH
Confidence 0 0012334455778888888887776
No 258
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.45 E-value=2.9e-05 Score=87.65 Aligned_cols=173 Identities=10% Similarity=0.070 Sum_probs=94.0
Q ss_pred EEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc--hhhh---cCCCCceeecccccC-
Q 003472 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADL---LGCVPDIACYGKLLT- 692 (817)
Q Consensus 620 iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~--a~e~---~gv~PDivtlgK~Lg- 692 (817)
+.+|++. | +.-.|.+. +.+-+++|.++|++||+++|+||++..|--.|... ..+. .+..-.+.+|||.+|
T Consensus 167 ~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 243 (385)
T PRK09276 167 AKLMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNM 243 (385)
T ss_pred ceEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCC
Confidence 4455555 5 44456655 78889999999999999999999997652222111 1111 111122348999996
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+.... ...+.+.+++...++.+.|+. .+...+++.+..+...+. +.+.++
T Consensus 244 ~G-lRiG~~i~~~~l~~~~~~~~------~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~----l~~~L~ 310 (385)
T PRK09276 244 TG-WRIGFAVGNADLIAGLGKVK------SNVDSGVFQAIQEAGIAALNG--PQEVVEELRKIYQERRDI----LVEGLR 310 (385)
T ss_pred cc-hhheeeeCCHHHHHHHHHHH------hhccCCCCHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 56 67788999999988875311 111223344555555555431 122223333333333333 334444
Q ss_pred cCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 773 SHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+... .-... -|.++-+++.+. .....+...++ ++||
T Consensus 311 ~~~~-~~~~~~~~~~~~v~~~~~------~~~~~l~~~ll~~~gi 348 (385)
T PRK09276 311 KLGL-EVEPPKATFYVWAPVPKG------YTSAEFATLLLDKAGV 348 (385)
T ss_pred hCCC-cccCCCcceEEEEECCCC------CCHHHHHHHHHHhCCE
Confidence 4432 11122 256567776432 12345666665 4676
No 259
>PRK09265 aminotransferase AlaT; Validated
Probab=98.44 E-value=6.9e-05 Score=85.28 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=95.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc--ee---ecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD--iv---tlgK~Lg-g 693 (817)
+.+++-| +.-.|.+. +.+-+++|.++|+++|+++|.||+...|--.+.. ... ....+| ++ +|+|.+| .
T Consensus 171 ~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 AIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI--ASLAPDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCH--HHcCCCceEEEEecchhhccCc
Confidence 3455556 44556655 6788999999999999999999999766222221 111 112233 22 5799995 4
Q ss_pred CCCcceEEEe--chH----HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLA--TNA----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 694 Gy~PlsAvl~--s~~----i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
| +-+|.+++ .++ +.+.+.. ....+++.+.++-.++.++|+ +.+..+.+.+..+.+.+. ++.+
T Consensus 246 G-lRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~-r~~~ 313 (404)
T PRK09265 246 G-FRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALG---GYQSINELILPGGRLYEQ-RDRA 313 (404)
T ss_pred c-cceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhc---CchhHHHHHHHHHHHHHH-HHHH
Confidence 7 78888885 333 2222210 111245566677676666663 211112222212222222 2334
Q ss_pred HHHHHcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++++.+.-+. .-|+++-+.+.... .......+.+.+.+.++||+
T Consensus 314 ~~~L~~~~~~~~~~p~~g~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gv~ 362 (404)
T PRK09265 314 WELLNAIPGVSCVKPKGALYAFPKLDPKV-YPIHDDEQFVLDLLLQEKVL 362 (404)
T ss_pred HHHHhcCCCCcccCCCcceEEEEEecccc-cCCCCHHHHHHHHHHhCCEE
Confidence 45555665432222 33777777775431 00012344566677788873
No 260
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=98.43 E-value=1.1e-05 Score=90.41 Aligned_cols=299 Identities=13% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccC--CCCCC----ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHh
Q 003472 412 GPDATLQIELARDMGYTAARFGHVM--FPENV----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~--~~~~~----~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~ 485 (817)
..|.. .+.|.+++.+.+..+.... ..... .+...++.+.|+++++.+.-+.++|+.++++|++.++.......
T Consensus 7 ~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 7 GTGPM-PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp SS-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CccCC-CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc
Confidence 35666 8999999999887643211 01111 34455777888888875411579999999999999998872111
Q ss_pred hccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCC
Q 003472 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (817)
Q Consensus 486 t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P 565 (817)
....+|+.....|++.......+.. + .|. .+..++.+
T Consensus 86 ------------------~~g~~vl~~~~~~~s~~~~~~~~~~----~----------~g~-----------~v~~i~~~ 122 (371)
T PF00266_consen 86 ------------------KPGDEVLVTSNEHPSNRYPWEEIAK----R----------KGA-----------EVRVIPAD 122 (371)
T ss_dssp ------------------TTTCEEEEEESSHHHHHHHHHHHHH----H----------TTE-----------EEEEEEEG
T ss_pred ------------------ccccccccccccccccccccccccc----c----------chh-----------hhcccccc
Confidence 1234789999988875421111110 0 000 00011111
Q ss_pred chhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHH
Q 003472 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (817)
Q Consensus 566 ~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~ 645 (817)
.. ... + .+.+++.|. .++..|++--+ ....|.+.| +++
T Consensus 123 ~~-------------~~~--------~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~~ 160 (371)
T PF00266_consen 123 PG-------------GSL--------D--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IEE 160 (371)
T ss_dssp TT-------------SSC--------S--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HHH
T ss_pred cc-------------chh--------h--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ece
Confidence 00 000 0 255666664 35667777776 777899888 999
Q ss_pred HHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHhhhcCCCccce----
Q 003472 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFVGDSKLKA---- 719 (817)
Q Consensus 646 Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~---- 719 (817)
|.++|+++|+++++|=+|+ +|..- .-.+. ..+|++++ -| |+|+ .-+|.+.++++..+.+........
T Consensus 161 I~~~~~~~~~~~~vD~~~~-~g~~~--id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~ 233 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQS-AGCVP--IDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDF 233 (371)
T ss_dssp HHHHHHHTTSEEEEE-TTT-TTTSS----TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTH
T ss_pred ehhhhhccCCceeEechhc-ccccc--ccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhcccccccccccccc
Confidence 9999999999999999994 54431 22222 35798855 68 8886 457999999998888743211000
Q ss_pred -eec-----cc--CC---CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc---c--eEEee
Q 003472 720 -LLH-----GH--SY---SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV---Q--RVVAL 783 (817)
Q Consensus 720 -~~h-----~~--T~---~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V---~--~VrG~ 783 (817)
... .. -| +-+.....+..++|+.+++.+ .+++.++...+.+++.+.+ ++.|.+ + +-.-+
T Consensus 234 ~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~ 308 (371)
T PF00266_consen 234 PSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG-IERIRERIRELAEYLREAL----EELPGIEVLGPDDEPRR 308 (371)
T ss_dssp HHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHTTTEEESSSSCGGBG
T ss_pred ccchhcccccccccccccceeeehhhhHHHHHhhhhccc-cccchhhhhhHHHHHHhhh----hcCCceeEeeecccccc
Confidence 000 00 01 245666777788899885433 3566666666766555543 334432 1 22345
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+.++.+.+... ....+...+-++||
T Consensus 309 ~~i~~~~~~~~-------~~~~~~~~L~~~~I 333 (371)
T PF00266_consen 309 PSIVSFNLPGS-------DADDVVKYLEERGI 333 (371)
T ss_dssp TTEEEEEETTS-------SHHHHHHHHHHHTE
T ss_pred cceEEEeecCC-------CHHHHHHHHhhcCE
Confidence 77788888432 22444444444454
No 261
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.43 E-value=4.5e-05 Score=89.80 Aligned_cols=314 Identities=11% Similarity=0.077 Sum_probs=159.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~Al 478 (817)
..|++..|.- ..+|....+++.+++.+++.....+....+..+....+++.+...-+.+ ..+.++++++++||+..++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 5555555422 2456643788999998887653333222233455566666664432111 1357999999999998888
Q ss_pred HHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCc
Q 003472 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (817)
Q Consensus 479 klA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (817)
+... .. ...|+...-+|......+ ...|..
T Consensus 226 ~~l~-----~~----------------Gd~Vli~~P~y~~y~~~~-~~~g~~---------------------------- 255 (517)
T PRK13355 226 SALL-----DD----------------GDEVLIPSPDYPLWTACV-NLAGGT---------------------------- 255 (517)
T ss_pred HHhC-----CC----------------CCEEEEcCCCCcCHHHHH-HHCCCE----------------------------
Confidence 7651 11 136777777776543221 111111
Q ss_pred ceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccC
Q 003472 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (817)
Q Consensus 559 ~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~p 638 (817)
.+.+|- +.+.-|. .| .+.+++.+. +..-+.+|+-| +.--|.+.
T Consensus 256 --~v~~~~---------------~~~~~~~--~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 256 --AVHYRC---------------DEQSEWY--PD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred --EEEeec---------------CcccCCC--CC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 011100 0000000 00 144555543 22345667788 34456665
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCce--e---ecccccC-CCCCcceEEEec--hHH---
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLAT--NAV--- 707 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDi--v---tlgK~Lg-gGy~PlsAvl~s--~~i--- 707 (817)
+.+.+++|.++|++||+++|.||+..-|---|..+. ....+.||. + +|||.++ .| +=+|.++++ +++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~ 376 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKD 376 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHH
Confidence 688999999999999999999999865521222110 111123564 2 4799975 46 577778743 443
Q ss_pred -HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE
Q 003472 708 -FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (817)
Q Consensus 708 -~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm 786 (817)
.+.+.. .....+..|.++-.++.++|+-. +...+.+.+ .+.+.+. ++.+.+.+++.|.+.-+.-.|.|
T Consensus 377 ~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~--~~~~~~~~~-~~~~~~~-r~~l~~~L~~~~g~~~~~p~g~f 445 (517)
T PRK13355 377 YIEGLNM-------LANMRLCSNVPAQSIVQTALGGH--QSVKDYLVP-GGRVYEQ-RELVYNALNAIPGISAVKPKAAF 445 (517)
T ss_pred HHHHHHH-------HhcCcCCcChHHHHHHHHHhcCC--ccHHHHHHH-HHHHHHH-HHHHHHHHhcCCCcccCCCCeee
Confidence 222210 01122345566666666666311 111122222 1222222 23455556666554444455655
Q ss_pred EEE-EEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 787 CAI-ELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 787 ~gI-el~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
+.+ ++.... ... +....+.+.+.++||.
T Consensus 446 y~~~~l~~~~--~~~~~~~~~~~~ll~~~gV~ 475 (517)
T PRK13355 446 YIFPKIDVKK--FNIHDDEQFALDLLHDKKVL 475 (517)
T ss_pred EEEeecCccc--CCCCCHHHHHHHHHHhCCEE
Confidence 443 554310 001 1223334455667763
No 262
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.42 E-value=7.2e-05 Score=85.41 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=96.6
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
.++.-| +.--|.+. +.+-+++|.++|+++|+++|.||+...|-..+.. .....+.-..+++ +|||.+| .| +
T Consensus 181 i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-l 256 (412)
T PTZ00433 181 LIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG-W 256 (412)
T ss_pred EEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC-e
Confidence 344455 44456555 6788999999999999999999999776322321 1111111111233 7899985 57 7
Q ss_pred cceEEEe------chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 697 PLAATLA------TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 697 PlsAvl~------s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
=+|.+++ .+++.+.+.. ....+++.++++.+++.+.|+-- .++..+++.+..+.-.+ .+.+.
T Consensus 257 RlG~~i~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~----~l~~~ 324 (412)
T PTZ00433 257 RLGWLLLVDPHGNGGDFLDGMKR-------LGMLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAM----VLYNH 324 (412)
T ss_pred eEEEEEEeCCcccHHHHHHHHHH-------HhhccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHH----HHHHH
Confidence 8888886 2456655532 11224566777777776666421 11222233222222222 34455
Q ss_pred HHcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 771 ISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
++++..+.-+.- -|.++-+.+.... -.+......+...+++ +||+
T Consensus 325 L~~~~~~~~~~p~gg~f~~~~l~~~~-~~~~~~~~~~~~~ll~~~gV~ 371 (412)
T PTZ00433 325 IGECIGLSPTMPRGSMFLMSRLDLEK-FRDIKSDVEFYEKLLEEENVQ 371 (412)
T ss_pred HhcCCCCcccCCCeeEEEEEEechhh-cCCCCCHHHHHHHHHHhcCEE
Confidence 555433322233 3667777775321 0011124567777774 6874
No 263
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.42 E-value=3.8e-05 Score=89.60 Aligned_cols=297 Identities=11% Similarity=0.035 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHH--hccccC---CCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 003472 418 QIELARDMGYTAA--RFGHVM---FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (817)
Q Consensus 418 hP~V~~Ai~~q~~--~~~~~~---~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~ 492 (817)
.|.|.+++.+... .+..++ ...+..+...++.+.+++++|-+ +..++.++|+.+...++.++ |.+...+|.
T Consensus 83 ~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~-r~~~~~~Gd- 158 (481)
T PRK04366 83 NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMI-RAYHEARGD- 158 (481)
T ss_pred CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHH-HHHhhccCc-
Confidence 6888888887522 222221 11123455678888899988732 23555678888887777766 443322221
Q ss_pred ccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcc
Q 003472 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (817)
Q Consensus 493 ~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~ 572 (817)
..|.+|+..+. .|.+...++...|.. +..++....+
T Consensus 159 -----------~~~~~Vlv~~~-~hp~~~~~~~~~G~~----------------------------vv~v~~~~~~---- 194 (481)
T PRK04366 159 -----------TKRTEVIVPDS-AHGTNPASAAMAGFK----------------------------VVEIPSNEDG---- 194 (481)
T ss_pred -----------CCCCEEEEcCC-ccHhHHHHHHHcCCE----------------------------EEEeecCCCC----
Confidence 12456666654 566555443332211 0111111000
Q ss_pred cccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHh
Q 003472 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ 651 (817)
Q Consensus 573 ~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~ 651 (817)
..| .+.+++.+. . ++++|++ -| . ..|.+ ..-+++|.++|+
T Consensus 195 -------~~D------------------~e~L~~~i~-------~-~t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~ 235 (481)
T PRK04366 195 -------LVD------------------LEALKAAVG-------E-DTAALMLTNP--N-TLGLF---ERNILEIAEIVH 235 (481)
T ss_pred -------CcC------------------HHHHHhhcc-------c-CCeEEEEeCC--C-Ccccc---chHHHHHHHHHH
Confidence 001 245555553 2 3444444 44 2 33443 123899999999
Q ss_pred hcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC----CCCc-ceEEEechHHHhhhcCCC---ccceee
Q 003472 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG----GVIP-LAATLATNAVFDSFVGDS---KLKALL 721 (817)
Q Consensus 652 ~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg----Gy~P-lsAvl~s~~i~d~~~~~~---~~~~~~ 721 (817)
++|+++|+|+++. .+-+|.. ....+| .|+++. -|.|++ | -| +|.+.+++++.+.+...- ....+.
T Consensus 236 ~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~G-gp~~G~l~~~~~~~~~lp~~~v~~~g~~~~ 310 (481)
T PRK04366 236 EAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGG-GPGSGPVGVKEELAPFLPVPVVEKDGDRYR 310 (481)
T ss_pred HcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCC-CCCeeeeeehhhhHhhCCCCeeeccCCcee
Confidence 9999999999984 2233322 112233 598855 388762 2 23 455667877776653210 000111
Q ss_pred c----------ccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee-EEEEE
Q 003472 722 H----------GHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT-LCAIE 790 (817)
Q Consensus 722 h----------~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl-m~gIe 790 (817)
. .-.++++.+.+.++...+..+-.+++ .++.++...+..+|.++|.+. +..+.+ +... .+.+.
T Consensus 311 l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl-~~~a~~~~~~a~~l~~~L~~~---~~~~~~--~~~~~~~~~~ 384 (481)
T PRK04366 311 LDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGL-REVSEDAVLNANYLKARLKDI---YDLPYD--RPCMHEFVLS 384 (481)
T ss_pred ecccccccCCCcccccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhh---CcccCC--CCeeEEEEEE
Confidence 0 11234555666666666666644333 233344444555555555443 222211 1100 01111
Q ss_pred ---EecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 791 ---LQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 791 ---l~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
|...+ .....+...+.++|+++
T Consensus 385 ~~~~~~~g-----~~~~~v~~~L~~~Gi~~ 409 (481)
T PRK04366 385 GKKLKETG-----VRTLDIAKRLLDYGFHP 409 (481)
T ss_pred CccccccC-----CCHHHHHHHHHHCCccC
Confidence 11111 24566888889999863
No 264
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.42 E-value=6.1e-06 Score=93.54 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=140.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..+|....|+++|+++-+ .+.+++++||..|+.+++...+ +.| ..||.....|++.
T Consensus 59 ~~nPt~~~le~~la~LEg---~~~a~~~~SGmaAi~~~~~~ll-----~~G----------------D~Vv~~~~~Yg~t 114 (395)
T PRK08114 59 RGTLTHFSLQEAMCELEG---GAGCALYPCGAAAVANAILAFV-----EQG----------------DHVLMTGTAYEPT 114 (395)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEhHHHHHHHHHHHHHc-----CCC----------------CEEEEeCCCcHHH
Confidence 457888899999999866 3689999999999999887552 111 2566666666553
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
...+.-. ...+|.- +..+. ..|
T Consensus 115 -~~l~~~~-------------l~~~Gi~-----------v~~vd----------------~~d----------------- 136 (395)
T PRK08114 115 -QDFCSKI-------------LSKLGVT-----------TTWFD----------------PLI----------------- 136 (395)
T ss_pred -HHHHHHH-------------HHhcCcE-----------EEEEC----------------CCC-----------------
Confidence 2221100 0000100 00000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC--CcEEEeeeeeccccccccchhhh
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G--ilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
.+.+++.|+ .+...|++|.+ ...-|.+.+ +++|.++|+++| +++|+|.+++ +|.. ++-
T Consensus 137 -~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~~--~~p 196 (395)
T PRK08114 137 -GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGVL--FKA 196 (395)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----cccc--cCH
Confidence 134566664 24679999997 777788888 999999999985 9999999994 2322 444
Q ss_pred cCCCCceee--cccccCCC-CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHH
Q 003472 678 LGCVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIP 754 (817)
Q Consensus 678 ~gv~PDivt--lgK~LggG-y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~ 754 (817)
...-.|+++ .-|.|+|. =+-.|+++.+++.++.+.... ...|. ..+|..|--.+..|+-+.- ..++..+
T Consensus 197 l~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~----~~~G~--~~~p~~a~l~~rgl~TL~l--R~~~~~~ 268 (395)
T PRK08114 197 LDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS----YLMGQ--MVDADTAYMTSRGLRTLGV--RLRQHEE 268 (395)
T ss_pred HHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH----HhccC--CCCHHHHHHHHcCCCcHHH--HHHHHHH
Confidence 444578885 57988873 134555666776655442110 01121 3356666655444443311 1234445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcceE------------------EeeeeEEEEEEec
Q 003472 755 ERRILRELWDLELIQQISSHRTVQRV------------------VALGTLCAIELQA 793 (817)
Q Consensus 755 ~~~~lg~~l~~~l~~~l~~~p~V~~V------------------rG~Glm~gIel~~ 793 (817)
++..+.+ .+++||.|..| .|.|.|+.|++..
T Consensus 269 na~~va~--------~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 269 SSLKVAE--------WLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred HHHHHHH--------HHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 5555443 45566665544 3678899999964
No 265
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.41 E-value=1.4e-05 Score=89.65 Aligned_cols=276 Identities=14% Similarity=0.122 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
.+..+++.+.++....+ ...+...+|+++++++++ .+.++.++||+.|...|++.. . .
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-~-~------------- 62 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-G-L------------- 62 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-T-G-------------
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-C-C-------------
Confidence 34556666766654222 226889999999999998 468999999999999999987 1 1
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~ 578 (817)
.....||.-.-+|.+.....+.++..+.
T Consensus 63 -----~~gdeVi~p~~t~~~~~~ai~~~G~~pv----------------------------------------------- 90 (363)
T PF01041_consen 63 -----GPGDEVIVPAYTFPATASAILWAGAEPV----------------------------------------------- 90 (363)
T ss_dssp -----GTTSEEEEESSS-THHHHHHHHTT-EEE-----------------------------------------------
T ss_pred -----CcCceEecCCCcchHHHHHHHHhccEEE-----------------------------------------------
Confidence 1124777777777663322222221110
Q ss_pred cccCcc-hhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 579 TFCSRD-EIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 579 ~~~d~~-~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
|.|.| +-+.. | .+.+++.+.+ +..|||+=-+ . |... -+.+|+++|+++|+.|
T Consensus 91 -~~Di~~~~~~i--d--------~~~~~~~i~~--------~t~ai~~~h~-~---G~~~----d~~~i~~~~~~~~i~l 143 (363)
T PF01041_consen 91 -FVDIDPETLNI--D--------PEALEKAITP--------KTKAILVVHL-F---GNPA----DMDAIRAIARKHGIPL 143 (363)
T ss_dssp -EE-BETTTSSB-----------HHHHHHHHHT--------TEEEEEEE-G-G---GB-------HHHHHHHHHHTT-EE
T ss_pred -EEeccCCcCCc--C--------HHHHHHHhcc--------CccEEEEecC-C---CCcc----cHHHHHHHHHHcCCcE
Confidence 11111 00000 0 2567777762 3466666554 3 3333 3999999999999999
Q ss_pred EEeeeeeccccccccchhhhcCCCCceeecc----cccCCCCCcceEEEech-HHHhhh---cCCCcc----ceee----
Q 003472 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDSF---VGDSKL----KALL---- 721 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv~PDivtlg----K~LggGy~PlsAvl~s~-~i~d~~---~~~~~~----~~~~---- 721 (817)
|-|=.|+ +|- .+--...|-.-|+.+|| |.++.|= -|++++++ ++++.+ ...... ..+.
T Consensus 144 IeD~a~a-~g~---~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (363)
T PF01041_consen 144 IEDAAQA-FGA---RYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP 217 (363)
T ss_dssp EEE-TTT-TT----EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS
T ss_pred EEccccc-cCc---eeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHHhhhhhccCcCcccccccccccc
Confidence 9999995 432 22223334444888876 8886431 24566654 444433 222110 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcc------eE-EeeeeEEEEEEecC
Q 003472 722 HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQ------RV-VALGTLCAIELQAA 794 (817)
Q Consensus 722 h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~------~V-rG~Glm~gIel~~~ 794 (817)
.|..|-.+++.+|.+++-|+.+++ .+ +.-++..+. +.+.+++.+.+. +. +.....+.+.+.+.
T Consensus 218 ~g~n~rm~~~~AAigl~QL~~L~~-----~~-~~R~~~a~~----y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~ 287 (363)
T PF01041_consen 218 PGYNFRMSELQAAIGLAQLKRLDE-----II-ARRRENAQR----YREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDE 287 (363)
T ss_dssp S--B-B-BHHHHHHHHHHHHTHHH-----HH-HHHHHHHHH----HHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCC
T ss_pred CCcccccHHHHHHHHHHHHHHhhh-----hH-HHHHHHHHH----HHHHHhcCCCccccccccccccccccccccccccc
Confidence 356677899999999999988854 22 222233332 334455554331 11 12333445544433
Q ss_pred CCCCCcchHHHHHHHHHHcCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv 815 (817)
. ......++..+.++||
T Consensus 288 ~----~~~rd~l~~~L~~~GI 304 (363)
T PF01041_consen 288 A----LADRDELVEALRARGI 304 (363)
T ss_dssp G----CSTHHHHHHHHHHTTB
T ss_pred c----cchHHHHHHHHHHCCC
Confidence 1 1246778888888887
No 266
>CHL00175 minD septum-site determining protein; Validated
Probab=98.41 E-value=4.5e-06 Score=90.33 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--------
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~-------- 292 (817)
+|+|||.+.+|+... ........ -.+|+|+.....++.++...++.+...+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~------~~~~l~~a-D~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVG------FINAIAPA-QEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHH------HHHHHHhc-CeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 999999998765322 12222222 368899999999999999999999988777789999998322
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 293 NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+++++ +.|+++ ||+.+.+.
T Consensus 200 ~~~~l~~~~--~~~~~~~Ip~d~~v~ 223 (281)
T CHL00175 200 SVRDVQEML--GIPLLGAIPEDENVI 223 (281)
T ss_pred cHHHHHHHh--CCCeEEEccCCHhHH
Confidence 233466777 899999 99887654
No 267
>PRK07337 aminotransferase; Validated
Probab=98.40 E-value=5.8e-05 Score=85.31 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=99.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gG 694 (817)
..+.++.-| +.--|.+. +.+-+++|.++|+++|+++|+||+..+|.-.+... ......++++ +++|.+| .|
T Consensus 164 ~~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 164 TRGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV--SALSLGDDVITINSFSKYFNMTG 238 (388)
T ss_pred ceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc--ChhhccCCEEEEEechhhcCCch
Confidence 344455555 34456555 78889999999999999999999987774333211 1112345654 6799997 57
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++.+++++.+... ......+.++++..++.++++ ++. .+.+.+..+.+.+. ++.+.+.++++
T Consensus 239 -~RiG~~~~~~~l~~~l~~~------~~~~~~~~s~~~q~~~~~~l~---~~~-~~~~~~~~~~~~~~-r~~~~~~L~~~ 306 (388)
T PRK07337 239 -WRLGWLVVPEALVGTFEKL------AQNLFICASALAQHAALACFE---PDT-LAIYERRRAEFKRR-RDFIVPALESL 306 (388)
T ss_pred -hheeeeecCHHHHHHHHHH------HHHhccCCChHHHHHHHHHhc---cCc-hHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 6788899999988877431 111233456666666555542 211 12222222222221 12234445554
Q ss_pred CCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 775 RTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 775 p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
++...+ ..-|.++-+++..... .+......|...++ ++||
T Consensus 307 ~~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~ll~~~gv 348 (388)
T PRK07337 307 GFKVPVMPDGAFYVYADCRGVAH-PAAGDSAALTQAMLHDAGV 348 (388)
T ss_pred CCccccCCCeeEEEEEecccccC-CCCCCHHHHHHHHHHhCCE
Confidence 432212 2347888888854210 01112344555544 5676
No 268
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=98.40 E-value=6.8e-05 Score=85.05 Aligned_cols=304 Identities=10% Similarity=-0.016 Sum_probs=158.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCC-C-c-ceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-W-A-SRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~-~-~-~~v~f~~SGseA~E~ 476 (817)
.+||+..|.- .++ . .+.+.+++.+.+.....+....+..+....+++.+.+..+-. . - +.++.++++++|...
T Consensus 30 ~~i~l~~~~p--~~~-~-~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~ 105 (396)
T PRK09147 30 PPISLSIGEP--KHP-T-PAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFA 105 (396)
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHH
Confidence 7788776542 233 2 577888888766543322212233455667777776543411 0 1 368889999999988
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... . .| .....|+.-.-+|.+-... ....|.
T Consensus 106 ~~~~l~----~-~~-------------~~gd~vlv~~P~y~~~~~~-~~~~g~--------------------------- 139 (396)
T PRK09147 106 FAQTVI----D-RD-------------GPGPLVVCPNPFYQIYEGA-ALLAGA--------------------------- 139 (396)
T ss_pred HHHHHc----C-CC-------------CCCCEEEEcCCCccchHHH-HHhcCC---------------------------
Confidence 888661 1 10 0023566666666542211 111111
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCCc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGM 635 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAA-vIvEPV~qg~gG~ 635 (817)
..++.|-.- +.-|. -| .+.+++.+.+ ++.+ +|.-| +.=.|.
T Consensus 140 ---~~~~vp~~~---------------~~~~~--~d--------~~~l~~~~~~--------~~k~i~l~nP--~NPTG~ 181 (396)
T PRK09147 140 ---EPYFLNCDP---------------ANNFA--PD--------FDAVPAEVWA--------RTQLLFVCSP--GNPTGA 181 (396)
T ss_pred ---EEEEeccCc---------------cccCc--cC--------HHHHHHHHhh--------ccEEEEEcCC--CCCcCc
Confidence 011111000 00000 00 1344444431 2334 44555 444566
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cch-hh---hcCC-CCc-ee---ecccccC-CCCCcceEEEe
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-AD---LLGC-VPD-IA---CYGKLLT-GGVIPLAATLA 703 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a-~e---~~gv-~PD-iv---tlgK~Lg-gGy~PlsAvl~ 703 (817)
+. +++-+++|.++|++|++++|.||+..-|--.+. ... .. ..+. ..| ++ +|||.++ .| +-+|.+++
T Consensus 182 ~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~ 259 (396)
T PRK09147 182 VL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAG 259 (396)
T ss_pred cC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc-ceeeeecC
Confidence 55 789999999999999999999999975521121 111 11 1111 112 22 8999864 47 78888999
Q ss_pred chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee
Q 003472 704 TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL 783 (817)
Q Consensus 704 s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~ 783 (817)
++++++.+... ....+++.++++.+++.+.+. .++ .+.++.+.+.+.. +.+.+.++++ .......-
T Consensus 260 ~~~l~~~~~~~------~~~~~~~~~~~~q~a~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~~L~~~-~~~~~p~~ 325 (396)
T PRK09147 260 DAALLKKFLLY------RTYHGCAMPPAVQAASIAAWN---DEA---HVRENRALYREKF-DAVTPILAPV-LDVQLPDA 325 (396)
T ss_pred CHHHHHHHHHH------hhhcccCCCHHHHHHHHHHhc---chh---HHHHHHHHHHHHH-HHHHHHHHHh-cCCCCCCe
Confidence 99998877421 112345667777777766652 222 2222222332221 1233334333 11112235
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
|.++-+++..+ ...+...++ ++||
T Consensus 326 g~f~~~~~~~~--------~~~~~~~ll~~~gv 350 (396)
T PRK09147 326 GFYLWAKVPGD--------DTEFARRLYADYNV 350 (396)
T ss_pred eEEEEEECCCC--------HHHHHHHHHHhCCE
Confidence 88888887511 234556665 4676
No 269
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.39 E-value=1.1e-05 Score=92.72 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||++|+..|+...+ +. ...||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll-----~~----------------Gd~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLM-----GA----------------GSHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCccHHH
Confidence 3567889999999999874 468999999999999987652 11 12677777777763
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
. ..+... .. + .|. . +.|-|.+ |
T Consensus 117 ~-~~~~~~-l~--~----------~Gi-------------~-----------------v~~vd~~-------d------- 138 (433)
T PRK08134 117 H-NLLHYT-LR--R----------FGI-------------E-----------------TTFVKPG-------D------- 138 (433)
T ss_pred H-HHHHHH-Hh--h----------CCe-------------E-----------------EEEECCC-------C-------
Confidence 2 211100 00 0 000 0 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.|. .++.+|++|-+ ....|.+.+ +++|.++|+++|+++|+|.+|. .|..- .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~-----~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLL-----RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 145666664 24678899986 666777777 9999999999999999999994 22211 1223
Q ss_pred CCCceeec--ccccCC-CCCcceEEEe
Q 003472 680 CVPDIACY--GKLLTG-GVIPLAATLA 703 (817)
Q Consensus 680 v~PDivtl--gK~Lgg-Gy~PlsAvl~ 703 (817)
.-.|++++ .|-++| | --++++++
T Consensus 199 ~GaD~vv~S~tK~l~g~g-~~~gG~v~ 224 (433)
T PRK08134 199 HGADLVYHSATKFLGGHG-TAIGGVLV 224 (433)
T ss_pred cCCCEEEeccccccCCCC-CceEEEEE
Confidence 45688754 677775 4 23444443
No 270
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.38 E-value=6e-05 Score=84.47 Aligned_cols=173 Identities=11% Similarity=-0.049 Sum_probs=98.4
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhh--cCCC-Ccee---eccccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL--LGCV-PDIA---CYGKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~--~gv~-PDiv---tlgK~L 691 (817)
++.+|++... +.--|.+. +.+-+++|.++|+++|+++|.||++..+.-.|... ..+. .+.. +.++ +|+|.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 4566777654 66667666 67889999999999999999999997663333221 1111 0111 1222 799998
Q ss_pred C-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH
Q 003472 692 T-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ 770 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~ 770 (817)
| .| +=+|.+++++++.+.+... ....++..+++..+++.+.|+ +++..++..+..+.. ++.+.+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~----~~~l~~~ 291 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELLEV------RKHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARR----RAVLRPA 291 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHHHH------HHhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHH----HHHHHHH
Confidence 6 46 6778899999988877431 112334456676666655553 322222222222222 2234445
Q ss_pred HHcCCCcceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 771 ISSHRTVQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 771 l~~~p~V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++++.. .-.... |+++-+++.. ....+...+.++||+
T Consensus 292 L~~~g~-~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gv~ 329 (364)
T PRK07865 292 LEAAGF-RVDHSEAGLYLWATRGE--------DCWDTVAWLAERGIL 329 (364)
T ss_pred HHHcCC-cccCCCccEEEEEeCCC--------CHHHHHHHHHHCCEE
Confidence 555442 111222 5555555521 124566777888874
No 271
>PRK05939 hypothetical protein; Provisional
Probab=98.38 E-value=9.2e-06 Score=92.41 Aligned_cols=161 Identities=10% Similarity=0.066 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.++.++||..|+..++.... + ++ ..||+.+..|.+
T Consensus 44 ~g~p~~~~lE~~la~leg~---~~~v~~ssG~~Ai~~~l~all-----~---------------~G-d~Vv~~~~~y~~- 98 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGG---VGTVCFATGMAAIAAVFLTLL-----R---------------AG-DHLVSSQFLFGN- 98 (397)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHc-----C---------------CC-CEEEECCCcccc-
Confidence 3578889999999999873 568888999999998887652 1 11 256666655543
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+...+..- ..+ |.- +..++ ..|
T Consensus 99 t~~~~~~l--~~~------------G~~-----------v~~v~----------------~~d----------------- 120 (397)
T PRK05939 99 TNSLFGTL--RGL------------GVE-----------VTMVD----------------ATD----------------- 120 (397)
T ss_pred HHHHHHHH--Hhc------------CCE-----------EEEEC----------------CCC-----------------
Confidence 32211110 000 000 00010 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|+++|+++|+|++|+. +.. ++-..
T Consensus 121 -~e~l~~~l~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~~--~~~~~ 180 (397)
T PRK05939 121 -VQNVAAAIR--------PNTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PWL--FRPKD 180 (397)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----ccc--cCccc
Confidence 144665554 24668899987 777777755 99999999999999999999842 111 12222
Q ss_pred CCCcee--ecccccCC-CCCcceEEEec
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLAT 704 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s 704 (817)
...|++ .++|.++| | --++.+++.
T Consensus 181 ~gaDivv~S~sK~~~g~g-~~igg~v~~ 207 (397)
T PRK05939 181 VGASLVINSLSKYIAGHG-NALGGAVTD 207 (397)
T ss_pred cCCEEEEecCeecccCCC-CeEEEEEec
Confidence 346776 67899997 5 445555553
No 272
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=98.38 E-value=3e-05 Score=86.81 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=98.0
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch-hhhcCCCCcee---ecccccC-CC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a-~e~~gv~PDiv---tlgK~Lg-gG 694 (817)
...+|.-| +.=-|.+.+ .++|.++|+++++ +|+||+...|-..+..-. ....+-.+.++ +|||.+| .|
T Consensus 150 ~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~G 222 (360)
T PRK07392 150 DGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPG 222 (360)
T ss_pred CEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCc
Confidence 45666777 455577775 4678888999986 666999988744442111 11122223443 7899999 89
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-+|.+++++++++.+... ...++-+.++..++.+.|+ +.++.+.+.+..+..+ +.+.+.+++.
T Consensus 223 -lRiG~~v~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r----~~l~~~L~~~ 286 (360)
T PRK07392 223 -LRLGYAIAHPDRLQRWQQW--------RDPWPVNGLAAAAAIAALA---DRDFQQQTWAWLPPAR----EALFQGLASL 286 (360)
T ss_pred -hheeeeeCCHHHHHHHHhh--------CCCCCCCHHHHHHHHHHhc---cHHHHHHHHHHHHHHH----HHHHHHHHhC
Confidence 8999999999998877421 1246677888887777764 3223333333222222 2344555555
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.-..+.|.++-+++.. ....+...++ ++||+
T Consensus 287 ~~~~~~~~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~ 321 (360)
T PRK07392 287 PGLTPLPSAANFLLVQSQG--------SALQLQEKLLQQHRIL 321 (360)
T ss_pred CCcEECCCCCCEEEEEcCC--------CHHHHHHHHHhhCCEE
Confidence 5433233456676666532 1244555554 45763
No 273
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.37 E-value=2e-05 Score=78.61 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhh-hCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~-~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------ 292 (817)
.+|+|||-+..++. .....+.+ ..---+|+|+....-++..+...++.+++.+.++.|+|+|++...
T Consensus 67 ~yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 49999999977532 12223332 233558888888889999999999999999999999999997311
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCC
Q 003472 293 --------NEVPLMSYLRNRVPVLV-LPPLP 314 (817)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-iP~~~ 314 (817)
..+.+.+.+ +.|++| ||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~--~~~~~~~ip~~~ 169 (169)
T cd02037 141 KIYIFGKGGGEKLAEEL--GVPLLGKIPLDP 169 (169)
T ss_pred cccccCCccHHHHHHHc--CCCEEEeccCCC
Confidence 122333334 899999 99864
No 274
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.37 E-value=0.0001 Score=83.10 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCc
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~P 697 (817)
..+|++.-+ +...|.+.+ +++|.++|+++|+++|+|++|. +|.. . .+.....+|+++++ |-+ | .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~--~~~~~~~~D~~~~s~~K~~--g-p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--P--VDVQKAGVDFLSFSAHKFH--G-PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--c--cCccccCCCEEEEcchhhC--C-CC
Confidence 356777665 677888887 7899999999999999999985 4321 1 11122357999888 953 3 23
Q ss_pred -ceEEEechHHH--hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 698 -LAATLATNAVF--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 698 -lsAvl~s~~i~--d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+|++.+++... ..+.+...... -..++-|..+..++.++++.+++ ..+...++.+.+.+++. +.+++.
T Consensus 208 G~g~l~vr~~~~~~p~~~g~~~~~~---~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~----~~L~~~ 278 (382)
T TIGR03403 208 GVGGLYIRKGVELTPLFHGGEHMGG---RRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLE----DALLEL 278 (382)
T ss_pred ceEEEEECCCCCCCCcccCCCCCCC---cccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH----HHHhcC
Confidence 57777776531 11100000000 01344677777777788877654 13444455555555444 444444
Q ss_pred CC
Q 003472 775 RT 776 (817)
Q Consensus 775 p~ 776 (817)
|.
T Consensus 279 ~~ 280 (382)
T TIGR03403 279 PD 280 (382)
T ss_pred CC
Confidence 43
No 275
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.37 E-value=3.4e-05 Score=85.86 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=145.2
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCC-------hHHHHHHHHHHhhcCCCCcceEEEeCChHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~-------~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
-|+|..+ +..+ +|++.+++...+... +.+.. ..| ....+.-+.+++++|.. -+.++|+++|+|
T Consensus 3 iYlD~~A---TTp~----~~~v~~~m~~~~~~~-fgNPs-S~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAA---TTPV----DPEVLEAMLPYLTEV-FGNPS-SLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred ccccccc---cCCC----CHHHHHHHHHHHHhh-cCCcc-chhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 5777665 2221 899999999988876 22211 122 23344555566677754 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
+|-.|||-++..+..+ +.++.||+-. -=|=+...++.--. +. ++
T Consensus 73 snNlaI~g~~~a~~~~---------------~~~~HIIts~-iEH~aVl~~~~~Le----~~--------g~-------- 116 (386)
T COG1104 73 SNNLAIKGAALAYRNA---------------QKGKHIITSA-IEHPAVLNTCRYLE----RQ--------GF-------- 116 (386)
T ss_pred HHHHHHHhhHHhhhcc---------------cCCCeEEEcc-cccHHHHHHHHHHH----hc--------CC--------
Confidence 9999999763223221 1123444432 22322221111100 00 00
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
+|+|-..+. . . ....+.|+++|+ ++...|-+=-+ ..+
T Consensus 117 ------------------------~Vtyl~V~~-~-------G--~v~~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 117 ------------------------EVTYLPVDS-N-------G--LVDLEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred ------------------------eEEEeCCCC-C-------C--eEcHHHHHHhcC--------CCceEEEEEec-ccC
Confidence 111211110 0 0 001366777775 24556666666 888
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeeccc-ccCCCCCcceEEEechHHHhhh
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK-~LggGy~PlsAvl~s~~i~d~~ 711 (817)
-|.+.| +++|-++|+++|++|-+|=|| ++|+.= .+.....-|+++||- .++|- =.+|++..++.+.-
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQ-a~Gkip----i~~~~~~vD~ls~SaHK~~Gp-kGiGaLyv~~~~~~-- 221 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQ-AVGKIP----IDLEELGVDLLSFSAHKFGGP-KGIGALYVRPGVRL-- 221 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhh-hcCcee----ccccccCcceEEeehhhccCC-CceEEEEECCCCcc--
Confidence 899999 999999999999999999999 577652 122222379998854 56662 34678887665431
Q ss_pred cCCCccceeecccCCC-------CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 712 VGDSKLKALLHGHSYS-------AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 712 ~~~~~~~~~~h~~T~~-------gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
.++.||+..- -|..+.++.-+++++..++ .+....+...++++|.+.+.
T Consensus 222 ------~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~ 277 (386)
T COG1104 222 ------EPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLL 277 (386)
T ss_pred ------CceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2234444332 2555566555666665331 12223344455555554444
No 276
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.36 E-value=0.00022 Score=81.06 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred EEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc--ee---ecccccC-C
Q 003472 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--IA---CYGKLLT-G 693 (817)
Q Consensus 621 AAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD--iv---tlgK~Lg-g 693 (817)
.+|++ -| +.-.|.+. +.+-+++|.++|+++|+++|+||+...|-..|..+. ....+.|+ ++ +|||.++ .
T Consensus 170 ~~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 170 AALIVNNP--SNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred eEEEEcCC--CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCc
Confidence 34444 55 44456554 788899999999999999999999987743442111 11122333 33 8899844 4
Q ss_pred CCCcceEEEech------HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 694 GVIPLAATLATN------AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 694 Gy~PlsAvl~s~------~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
| +=+|.+++.+ ++++.+.. ....+++.++++..++.+.|+-. .++..++..+..+..++ .+
T Consensus 246 G-lRiG~iv~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~a~~~~l~~~-~~~~l~~~~~~~~~~r~----~l 312 (401)
T TIGR01264 246 G-WRLGWIIIHDRRGILRDIRDGLVK-------LSQRILGPCTIVQGALPSILLRT-PQEYFDGTLSVLESNAM----LC 312 (401)
T ss_pred c-ceEEEEEecCcchhHHHHHHHHHH-------HhhccCCCCcHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHH----HH
Confidence 6 6788888763 33333321 01123455777777776776431 12222333333332233 34
Q ss_pred HHHHHcCCCcceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 768 IQQISSHRTVQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
.+.++++|.+.-+ ..-|+++-+++.... ..+......+...++ ++||+
T Consensus 313 ~~~L~~~~~~~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~l~~~~gI~ 362 (401)
T TIGR01264 313 YGALAAVPGLRPVMPSGAMYMMVGIEMEH-FPEFKNDVEFTERLVAEQSVF 362 (401)
T ss_pred HHHHHhCCCCcccCCCeeeEEEEEecccc-cCCCCCHHHHHHHHHHhCCEE
Confidence 4455555433222 335888888875421 011122355666666 67874
No 277
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.36 E-value=1.6e-05 Score=91.53 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..++...+|+++|+++.+. +.+++++||.+|+.+|+.... ..| ..||+....|+|.
T Consensus 66 ~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll-----~~G----------------d~VI~~~~~y~~t 121 (437)
T PRK05613 66 LTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLA-----GAG----------------DHIVTSPRLYGGT 121 (437)
T ss_pred ccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCccHHH
Confidence 4578888999999998873 588999999999998886541 111 2577666666653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
.......- . + .|.- +..++.| +|
T Consensus 122 ~~~~~~~l--~--~----------~Gi~-----------v~~vd~~---------------~d----------------- 144 (437)
T PRK05613 122 ETLFLVTL--N--R----------LGIE-----------VTFVENP---------------DD----------------- 144 (437)
T ss_pred HHHHHHHH--H--h----------cCeE-----------EEEECCC---------------CC-----------------
Confidence 11100000 0 0 0000 0001000 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.+++.+. .++.+|++|.. ..--|.+.+ +++|.++|+++|+++|+|.+|. .|.. .---.+|
T Consensus 145 -~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~~~G 206 (437)
T PRK05613 145 -PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPLELG 206 (437)
T ss_pred -HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChHHhC
Confidence 144666654 23567888876 444456666 9999999999999999999994 3222 1111234
Q ss_pred CCCceee--cccccCC-CCCcceEEEe
Q 003472 680 CVPDIAC--YGKLLTG-GVIPLAATLA 703 (817)
Q Consensus 680 v~PDivt--lgK~Lgg-Gy~PlsAvl~ 703 (817)
.|+++ +-|-++| | --++++++
T Consensus 207 --aDivv~S~~K~l~G~g-d~~gG~vv 230 (437)
T PRK05613 207 --ADVVVASLTKFYTGNG-SGLGGVLI 230 (437)
T ss_pred --CCEEEeeccceecCCC-cceeEEEE
Confidence 48885 4688876 4 23444444
No 278
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.36 E-value=8.3e-06 Score=92.22 Aligned_cols=249 Identities=18% Similarity=0.139 Sum_probs=144.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccC
Q 003472 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (817)
Q Consensus 439 ~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG 518 (817)
...++....|+++|+++-+ .+.++.++||-.|+-+++....+ + -..||..+..|+|
T Consensus 51 R~gnPt~~~le~~la~Le~---g~~a~~~~SGmaAi~~~l~~ll~--------------------~-Gd~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEG---GEDALLFSSGMAAISAALLALLK--------------------P-GDHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS---------------------T-TBEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhc---ccceeeccchHHHHHHHHHhhcc--------------------c-CCceEecCCccCc
Confidence 4557889999999999877 36899999999999888876521 1 1368999999988
Q ss_pred CccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
.....-.. ....|. . +.|-|.. +
T Consensus 107 t~~~~~~~--------------l~~~gv--------------~----------------v~~~d~~----------d--- 129 (386)
T PF01053_consen 107 TYRLLEEL--------------LPRFGV--------------E----------------VTFVDPT----------D--- 129 (386)
T ss_dssp HHHHHHHC--------------HHHTTS--------------E----------------EEEESTT----------S---
T ss_pred chhhhhhh--------------hcccCc--------------E----------------EEEeCch----------h---
Confidence 32111000 000010 0 1122210 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC-CcEEEeeeeeccccccccchhhh
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G-ilLI~DEV~TGfGRtG~~~a~e~ 677 (817)
.+.+++.++ .++.+|++|+. ..--.-++. ++++.++|+++| +++|+|...... ..++-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp------~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP------YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT------TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccce------eeecc
Confidence 256777775 27899999997 443333343 899999999999 999999998421 22333
Q ss_pred cCCCCcee--ecccccCC-CCCcceEEEech--HHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 678 LGCVPDIA--CYGKLLTG-GVIPLAATLATN--AVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 678 ~gv~PDiv--tlgK~Lgg-Gy~PlsAvl~s~--~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
+..-.||+ -+.|-++| |=+-.|+++++. ++++.+.... ...|.+ ..|..|...+..|+-+.- ..++.
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~----~~~G~~--~~p~da~ll~rgl~Tl~~--R~~~~ 260 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR----RLLGAT--LSPFDAWLLLRGLRTLPL--RMERQ 260 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH----HHHT-B----HHHHHHHHHHHTTHHH--HHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh----hhcCcc--chHHHHHHHhcCCCcHHH--HHHHH
Confidence 33347887 56898986 324456666554 6666553210 012222 245555554444444321 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecCCCCCCcchHHHHHHHH
Q 003472 753 IPERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAAGCNAGYCLIELFLYNF 810 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~~~~~~~~~~~~~~~~~ 810 (817)
.+++..+ .+.+++||.|..|. |.|-|++|+|.... +....|+..+
T Consensus 261 ~~nA~~l--------A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-----~~~~~f~~~l 323 (386)
T PF01053_consen 261 NENAEAL--------AEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-----EAARRFLDAL 323 (386)
T ss_dssp HHHHHHH--------HHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----HHHHHHHHH-
T ss_pred HHHHHHH--------HHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-----hhhHhHHhhh
Confidence 4444443 44567888888877 66679999998762 3555555544
No 279
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.36 E-value=0.00011 Score=83.79 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=158.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhc--cccCCCCCCChHHHHHHHHHHhhcCCC-Ccc-eEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~-~v~f~~SGseA~E 475 (817)
.++|+..|.. -+.. .+.+.+++.+.+... ..+....+..+....+++.+.+..+-. ..+ .+++++++.+|..
T Consensus 34 ~~~~l~~g~p---~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~ 109 (403)
T PRK08636 34 DIIDFSMGNP---DGPT-PQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYV 109 (403)
T ss_pred CEEEcCCcCC---CCCC-CHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHH
Confidence 6777766422 2333 566777777655431 111112233455667777776643311 124 5889999999888
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.++++.. . ....|+.-+-+|-+-... ....|..
T Consensus 110 ~~~~~l~-----~----------------~gd~Vlv~~P~y~~~~~~-~~~~g~~------------------------- 142 (403)
T PRK08636 110 HLVQAIT-----N----------------PGDVAIVPDPAYPIHSQA-FILAGGN------------------------- 142 (403)
T ss_pred HHHHHhC-----C----------------CCCEEEEcCCCCcchHHH-HHhcCCE-------------------------
Confidence 8887651 1 123677777777653221 1121111
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCC
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvE-PV~qg~gG 634 (817)
.+++|-.. ++ .+. -|. +...+.+++.+++ ...++.++++- | +.=.|
T Consensus 143 -----~~~v~~~~------------~~---~~~--~d~----~~l~~~l~~~~~~-----~~~~~~~i~~~~P--~NPTG 189 (403)
T PRK08636 143 -----VHKMPLEY------------NE---DFE--LDE----DQFFENLEKALRE-----SSPKPKYVVVNFP--HNPTT 189 (403)
T ss_pred -----EEEEeccc------------cc---cCc--cCh----hhhhhHHHHHHhh-----ccCCceEEEEeCC--CCCCC
Confidence 11111000 00 000 000 1112445666653 22344455544 6 34445
Q ss_pred cccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee----ecccccC-CCCCcceEEEechHHH
Q 003472 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA----CYGKLLT-GGVIPLAATLATNAVF 708 (817)
Q Consensus 635 ~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv----tlgK~Lg-gGy~PlsAvl~s~~i~ 708 (817)
.+. +.+-+++|.++|++|++++|.||+...+--.+.. -....+.-.+|.+ ++||.+| .| +-+|.++++++++
T Consensus 190 ~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li 267 (403)
T PRK08636 190 ATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLV 267 (403)
T ss_pred ccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHH
Confidence 555 7888999999999999999999998655211211 1111111123432 5899996 68 7999999999998
Q ss_pred hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE-eeeeEE
Q 003472 709 DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLC 787 (817)
Q Consensus 709 d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr-G~Glm~ 787 (817)
+.+..- .....++.+.+..+++..+++- .++..+++.+.-+...+ .+.+.+++++ +.-++ .-|+++
T Consensus 268 ~~~~~~------~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~----~l~~~L~~~~-~~~~~p~~g~~~ 334 (403)
T PRK08636 268 GALKKI------KSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRD----VLIESFANAG-WELQKPRASMFV 334 (403)
T ss_pred HHHHHH------HHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHH----HHHHHHHHCC-CcccCCCcceEE
Confidence 877431 1112234444444444444321 12222233222222222 2344444443 22222 357788
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 788 AIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 788 gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
-+.+.+.. .. .....+...++ ++||
T Consensus 335 ~~~l~~~~--~~-~~~~~l~~~ll~~~gV 360 (403)
T PRK08636 335 WAKIPEPA--RH-LGSLEFSKQLLTEAKV 360 (403)
T ss_pred EEECCCcc--CC-CCHHHHHHHHHHhCCE
Confidence 88875421 00 12345665655 4675
No 280
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.35 E-value=7.5e-06 Score=92.56 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=85.2
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCCCC-
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy- 695 (817)
++.+|++|-. ....|.+.+ +++|.++|+++|+++|+|+++. .+-.... .+...|++ ...|.++|.-
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~-----l~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNP-----LELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCCh-----hhcCCcEEEEecceeccCCcc
Confidence 5678999976 676777776 9999999999999999999983 2222111 12245887 5689887621
Q ss_pred CcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 696 IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 696 ~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+-.|+++++ +++.+.+.. .........+|..|+.++..|+.+. ...++-.+++..+.++|. +|
T Consensus 200 ~~~G~v~~~~~~~~~~~~~------~~~~~G~~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L~--------~~ 263 (378)
T TIGR01329 200 VMAGVLAVKGEEIAKKVYF------LQNSTGSGLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFLS--------TH 263 (378)
T ss_pred ceeEEEEeCcHHHHHHHHH------HHHhcCCcCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHH--------hC
Confidence 224555564 444344421 0111123356777765444443331 123444455555554333 33
Q ss_pred CCcceE------------------EeeeeEEEEEE
Q 003472 775 RTVQRV------------------VALGTLCAIEL 791 (817)
Q Consensus 775 p~V~~V------------------rG~Glm~gIel 791 (817)
|.|..| .|.|-|+.|++
T Consensus 264 ~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~ 298 (378)
T TIGR01329 264 PRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET 298 (378)
T ss_pred CCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE
Confidence 333222 46788999999
No 281
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.34 E-value=3.5e-05 Score=85.68 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=92.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccchhhhcCCCC-cee--ecccccC-CCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGV 695 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~a~e~~gv~P-Div--tlgK~Lg-gGy 695 (817)
..++.-| +.-.|.+.+ .++++++|+.+ ++++|+||++..|+. .. .....+..+ .++ +++|.+| .|
T Consensus 147 ~v~~~~P--~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~--~~-~~~~~~~~~~~i~~~S~SK~~~~~G- 216 (353)
T PRK05387 147 GIIFPNP--NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGG--ES-AIPLIDRYPNLLVVQTFSKSRSLAG- 216 (353)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCC--cc-hHHHHhhCCCEEEEEehhHhhcchh-
Confidence 3567777 455567665 44445555443 999999999976642 11 111111123 333 6899998 67
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+-+|.+++++++.+.+.... ....+++.++++.+++.++|+ +.+..++..++.....+. +.+.+++++
T Consensus 217 lR~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~----l~~~L~~~g 284 (353)
T PRK05387 217 LRVGFAIGHPELIEALNRVK-----NSFNSYPLDRLAQAGAIAAIE---DEAYFEETRAKVIATRER----LVEELEALG 284 (353)
T ss_pred hhceeeecCHHHHHHHHHhh-----ccCCCCCcCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH----HHHHHHHCC
Confidence 67888999999988874321 112356677777777766663 222233333333333332 334444444
Q ss_pred CcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. .-....|.++-+.+.. .....+...+.++||+
T Consensus 285 ~-~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~ 317 (353)
T PRK05387 285 F-EVLPSKANFVFARHPS-------HDAAELAAKLRERGII 317 (353)
T ss_pred C-eECCCcCcEEEEECCC-------CCHHHHHHHHHHCCEE
Confidence 2 1112234455454431 2345677788888874
No 282
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.33 E-value=0.00011 Score=83.68 Aligned_cols=244 Identities=12% Similarity=0.011 Sum_probs=136.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~A 477 (817)
..+|+..|.. .++ . +|.+.+++.+.+++.. .+....+..+....+++.+.+..+.. ..+.+.+++++++|+..+
T Consensus 34 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD-T-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 4566655432 222 2 6889999998886422 12222234456677888887765431 124688999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccC
Q 003472 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (817)
Q Consensus 478 lklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (817)
++... + . ...|+.-+-+|.+.. ..+...+..
T Consensus 110 ~~~~~----~-~----------------gd~vl~~~p~y~~y~-~~~~~~~~~--------------------------- 140 (402)
T PRK06107 110 LMATL----E-A----------------GDEVIIPAPYWVSYP-DMVLANDGT--------------------------- 140 (402)
T ss_pred HHHhc----C-C----------------CCEEEEecCCCcCHH-HHHHHcCCE---------------------------
Confidence 86541 1 1 125666665555421 111111100
Q ss_pred cceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCccc
Q 003472 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (817)
Q Consensus 558 ~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~ 637 (817)
...++.+... .|+ + + .+.+++.+. +...+.++.-| +.--|...
T Consensus 141 -~~~v~~~~~~----------~~~-~--------~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~~~ 183 (402)
T PRK06107 141 -PVIVACPEEQ----------GFK-L--------T--------PEALEAAIT-------PRTRWLILNAP--SNPTGAVY 183 (402)
T ss_pred -EEEecCCccc----------CCC-C--------C--------HHHHHhhcC-------cCceEEEEECC--CCCCCcCc
Confidence 0001110000 000 0 0 134555443 22233444445 34445544
Q ss_pred CCHHHHHHHHHHHhhc-CCcEEEeeeeeccccccccc-hhhhc--CCCCcee---ecccccC-CCCCcceEEEechHHHh
Q 003472 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVET-TADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 638 pp~~yl~~Lr~Lc~~~-GilLI~DEV~TGfGRtG~~~-a~e~~--gv~PDiv---tlgK~Lg-gGy~PlsAvl~s~~i~d 709 (817)
+.+-++++.++|+++ |+++|+||+...+.-.+..+ ..... +....++ .++|.+| .| +=+|.+++++++.+
T Consensus 184 -s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 184 -SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred -CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 788899999999998 99999999997552223211 11111 1222344 5699997 78 68888999999998
Q ss_pred hhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 710 SFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 710 ~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.+... ....++..+.++.+++.+.|+
T Consensus 262 ~~~~~------~~~~~~~~s~~~q~~~~~~l~ 287 (402)
T PRK06107 262 AINKL------QSQSSSCPSSISQAAAAAALN 287 (402)
T ss_pred HHHHH------HHhcccCCChHHHHHHHHHhc
Confidence 87531 122345667777777766663
No 283
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=98.32 E-value=8.8e-05 Score=83.84 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=94.3
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCC--c-ee---ecccccC-CC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D-IA---CYGKLLT-GG 694 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~P--D-iv---tlgK~Lg-gG 694 (817)
.+|.-| +.=-|.+. +.+-+++|.++|++||+++|.||+..-|--.+...........+ + ++ +|||.+| .|
T Consensus 169 i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 169 MVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 344444 55557655 78889999999999999999999987662222210011111222 2 22 8999997 67
Q ss_pred CCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC
Q 003472 695 VIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH 774 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~ 774 (817)
+=+|.+++++++++.+.... ...+++..+....++.+++. +.++..+++.+..+..++ .+.+.++++
T Consensus 246 -lRiG~~v~~~~li~~l~~~~------~~~~~~~~~~~~~~a~~~l~--~~~~~l~~~~~~~~~~r~----~l~~~L~~~ 312 (388)
T PRK07366 246 -FRIGFAIGNAQLIQALRQVK------AVVDFNQYRGILNGAIAALT--GPQATVQQTVQIFRQRRD----AFINALHQI 312 (388)
T ss_pred -hhheehcCCHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHH----HHHHHHHHC
Confidence 78888999999988774311 11122222323344455542 222222333333333333 234445555
Q ss_pred CCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 775 RTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 775 p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.......-|+++-+++.+.- . .....+...++ ++||.
T Consensus 313 ~~~~~~p~~g~f~~~~~~~~~---~-~~~~~~~~~l~~~~gv~ 351 (388)
T PRK07366 313 GWPVPLPEATMYVWAKLPEPW---Q-GNSVEFCTQLVAQTGVA 351 (388)
T ss_pred CCcccCCCeeEEEEEECCccc---C-CCHHHHHHHHHHhCCEE
Confidence 432122345778888775420 0 11244555554 55763
No 284
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.31 E-value=1.2e-05 Score=85.29 Aligned_cols=102 Identities=11% Similarity=0.161 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
..+.+.+.++.+.+. +|+|||.+.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~-------------~D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEE-------------FDYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHh-------------CCEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 344566666665544 9999999988765432 11122222 388899999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCCC--------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 273 SLKLRGYDVVAVVFEDHGLV--------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n~~~~~--------~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+...+..-.++|+|++... ..+.+++.+ +.|+++ ||+....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~~ 207 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEIL--SIPLIGVIPEDEAI 207 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHh--CCceeEEccCCHHH
Confidence 99887766689999997321 234556666 889999 9987654
No 285
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.30 E-value=0.00026 Score=80.83 Aligned_cols=199 Identities=14% Similarity=0.036 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhc--cccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~--~~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.|.+.+|+.+.++.. ..+....+..+....+++.+....+.+ .-+.+++++++++|...+++... ..
T Consensus 51 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-----~~----- 120 (409)
T PLN00143 51 TNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-----RP----- 120 (409)
T ss_pred CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-----CC-----
Confidence 677889888877642 222222334556666777776532211 02579999999999998888661 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+...-+|.+-...+ ...|.. .+.+|-..
T Consensus 121 -----------gd~v~v~~P~y~~~~~~~-~~~g~~------------------------------~~~~~~~~------ 152 (409)
T PLN00143 121 -----------EANILLPRPGFPDVETYA-IFHHLE------------------------------IRHFDLLP------ 152 (409)
T ss_pred -----------CCEEEEcCCCCcCHHHHH-HHcCCE------------------------------EEEEeccC------
Confidence 136777777776532111 111110 00000000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
-++ +. -| .+.+++.++ ....+.+++-| +.--|.+. +.+-+++|.++|++|+
T Consensus 153 -----~~~----~~--~d--------~~~l~~~~~-------~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~~ 203 (409)
T PLN00143 153 -----EKG----WE--VD--------LDAVEAIAD-------ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKLG 203 (409)
T ss_pred -----CCC----Cc--CC--------HHHHHHhcc-------cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHcC
Confidence 000 00 00 244555543 23456778888 44456665 7888999999999999
Q ss_pred CcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-CCCCCcceEEEec
Q 003472 655 IPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLAT 704 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-ggGy~PlsAvl~s 704 (817)
+++|.||+...|-..|..+ ....+.-.+.++ +|||.+ ..| +-+|.+++.
T Consensus 204 ~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~ 257 (409)
T PLN00143 204 ILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPG-WGLGWLVTC 257 (409)
T ss_pred CeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCc-cceEEEEee
Confidence 9999999998763333211 111122122233 789994 457 788889883
No 286
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.30 E-value=2.6e-05 Score=89.51 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T 664 (817)
+.|++.+.+ .+..++++|+++--....||. +.+.+.+++++++|++||+++|.|+++.
T Consensus 139 e~Le~~I~~----~~~~~~~~I~v~~p~N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~ 196 (431)
T cd00617 139 AKLEKLIDE----VGAENIPYIVLTITNNTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARF 196 (431)
T ss_pred HHHHHHhCc----ccCCCccEEEEECCcCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 667777763 224567888887321333564 5589999999999999999999999974
No 287
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.29 E-value=0.00042 Score=79.77 Aligned_cols=216 Identities=14% Similarity=0.014 Sum_probs=117.0
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccc--cCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~--~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~ 476 (817)
.+|++..|--...-.....|++.+|+.++++.... +....+..+....+++.+....+.+ .-+.+++++++++|+..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 66766554222211233256888999888765322 1111233445556666665432211 02579999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCccccc
Q 003472 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (817)
Q Consensus 477 AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (817)
+++... ..| ..|+.-+-+|......+ ...|..
T Consensus 133 ~~~~l~-----~~G----------------d~Vlv~~P~y~~y~~~~-~~~g~~-------------------------- 164 (430)
T PLN00145 133 IMSVLA-----QPG----------------ANILLPRPGYPLYEARA-VFSGLE-------------------------- 164 (430)
T ss_pred HHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCE--------------------------
Confidence 888761 111 25777766776522111 111110
Q ss_pred CcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcc
Q 003472 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (817)
Q Consensus 557 ~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~ 636 (817)
+..++.+.. ++ +. -| .+.+++.+. ....+.+|+-|- .--|.+
T Consensus 165 --~~~~~~~~~-------------~~----~~--~d--------~~~l~~~~~-------~~~~~i~i~~P~--NPtG~v 206 (430)
T PLN00145 165 --VRHFDLLPE-------------RG----WE--VD--------LEGVEALAD-------ENTVAMVIINPN--NPCGSV 206 (430)
T ss_pred --EEEeeCCcc-------------cC----Cc--CC--------HHHHHHHhC-------cCceEEEEeCCC--CCCCCC
Confidence 000110000 00 00 00 245555554 245677888883 444654
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---eccccc-CCCCCcceEEEe
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-TGGVIPLAATLA 703 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~L-ggGy~PlsAvl~ 703 (817)
. +.+-+++|.++|+++|+++|.||+...|---+..+ ....++-...++ .|||.. .-| +=+|.+++
T Consensus 207 ~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~ 276 (430)
T PLN00145 207 Y-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIAT 276 (430)
T ss_pred C-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEE
Confidence 4 78889999999999999999999987652222211 111122122233 789994 457 67888886
No 288
>PRK08354 putative aminotransferase; Provisional
Probab=98.29 E-value=0.0001 Score=80.90 Aligned_cols=184 Identities=16% Similarity=0.096 Sum_probs=112.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.+||+..+. +.+ . +|.+.+|+.+.++....+ +....|.+.+++..+ +.++.+++++||...++.
T Consensus 9 ~~i~l~~~~--np~--~-p~~~~~a~~~~~~~~~~y-------p~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSASV--NPY--P-PEWLDEMFERAKEISGRY-------TYYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCCC--CCC--C-CHHHHHHHHHHHHHhhcC-------CChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 688888742 333 5 789999998776543211 123567788888776 368899999999887664
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+. . .| .+|+..+-+|.+-...+ ...|..
T Consensus 73 ~~-----~-~g----------------d~vlv~~P~y~~~~~~~-~~~g~~----------------------------- 100 (311)
T PRK08354 73 LA-----L-RD----------------RKVIIPRHTYGEYERVA-RFFAAR----------------------------- 100 (311)
T ss_pred hh-----C-CC----------------CeEEEeCCCcHHHHHHH-HHcCCE-----------------------------
Confidence 33 1 11 25666666665532111 111110
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
.+..| .| .+.+++.++ ..+ ..+++-| +.--|.+. +
T Consensus 101 -~~~~~---------------~d------------------~~~l~~~~~-------~~~-~vi~~~P--~NPTG~~~-~ 135 (311)
T PRK08354 101 -IIKGP---------------ND------------------PEKLEELVE-------RNS-VVFFCNP--NNPDGKFY-N 135 (311)
T ss_pred -EeecC---------------CC------------------HHHHHHhhc-------CCC-EEEEecC--CCCCCCcc-C
Confidence 00000 00 133444443 122 4777788 34556655 7
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCcceEEEe
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLA 703 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~PlsAvl~ 703 (817)
.+-+++|.++|+++|+++|.||+...|..-+.. .. .+.++ +|||.+| .| +-+|.+++
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~ 196 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKG 196 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeee
Confidence 889999999999999999999999877322211 11 22222 7899998 78 78888887
No 289
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.28 E-value=4.9e-05 Score=84.18 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=99.8
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+++-|- .=-|.+. +.+-+++|.++|+++|+++|.||+...+....... .+.-.+.++ +|||.+| .| +
T Consensus 127 ~v~l~nP~--NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~---~~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNPN--NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLA---ACAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCCc--CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCccccc---ccccCCCEEEEeeccccccCCC-c
Confidence 46888883 3346655 67779999999999999999999997663211111 111123433 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++.+++++.+... ..++..+.++.+++.++|+.. ...+++.+.....++ .+.+.++++..
T Consensus 200 RiG~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~r~----~l~~~L~~~~~ 264 (330)
T PRK05664 200 RLGFVLAEPALLRALAEL--------LGPWTVSGPTRWLAQAALADT---PWQRRQRERLLAASQ----RLAALLRRHGL 264 (330)
T ss_pred ceEEEEeCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHhCh---HHHHHHHHHHHHHHH----HHHHHHHHCCC
Confidence 899999999999887532 124556677777777776432 222233333333233 34444555532
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
....|.+.++-+.+. ....+...+.++||+
T Consensus 265 -~~~~~~~~f~~~~~~---------~~~~~~~~l~~~gi~ 294 (330)
T PRK05664 265 -TPAGGCALFQWVRTE---------DAAALHEFLARRGIL 294 (330)
T ss_pred -cccCCcceEEEEecC---------CHHHHHHHHHHCCeE
Confidence 112233355554432 135677788888874
No 290
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.28 E-value=1.5e-05 Score=90.60 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=85.0
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee--ecccccCC--C
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv--tlgK~Lgg--G 694 (817)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++..+ -.... .....|++ .+.|.++| |
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~-----~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP-----LDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc-----hhhCCcEEEeecceeccCCcc
Confidence 4578888875 555677765 899999999999999999998422 11111 12235887 55798875 2
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHH---
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQ--- 770 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~--- 770 (817)
. =.|++++ ++++.+.+.. .........+|..+..++..++.+. ...++..+++..+.++|.+. -+.
T Consensus 207 ~-laG~~v~~~~~~~~~l~~------~~~~~g~~~~~~~a~l~~~gl~tl~--~R~~~~~~~a~~la~~L~~~-~~v~~v 276 (390)
T PRK08064 207 V-LAGLAVVKDEELAQKLYF------LQNSFGAVLGVQDCWLVLRGLKTLH--VRLEHSSETANKIALYLQEH-PKVQNV 276 (390)
T ss_pred c-eeEEEEeCCHHHHHHHHH------HHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhcC-CCcceE
Confidence 1 1233444 4567666632 1122233455666665444433221 12244455555555444331 011
Q ss_pred ----HHcCCCc----ceEEeeeeEEEEEEec
Q 003472 771 ----ISSHRTV----QRVVALGTLCAIELQA 793 (817)
Q Consensus 771 ----l~~~p~V----~~VrG~Glm~gIel~~ 793 (817)
+..+|.. ....|.|.|+.|++..
T Consensus 277 ~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (390)
T PRK08064 277 YYPGLQTHLGFDIQQSQATSAGAVLSFTLQS 307 (390)
T ss_pred ECCCCCCCccHHHHHHhCCCcceEEEEEECC
Confidence 1112211 1335889999999953
No 291
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.27 E-value=0.00026 Score=80.17 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=95.3
Q ss_pred EEEE-EEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc--ccc----hhhhcCC--CCcee---ec
Q 003472 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET----TADLLGC--VPDIA---CY 687 (817)
Q Consensus 620 iAAv-IvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG--~~~----a~e~~gv--~PDiv---tl 687 (817)
+.+| |.-| +.=-|.+. +.+-+++|.++|++|++++|.||+...+-..+ ..- .....+. .+.++ ++
T Consensus 166 ~k~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 166 CQLLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred ceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3444 4555 44456655 78899999999999999999999987552222 110 1111221 12232 78
Q ss_pred ccccC-CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHH
Q 003472 688 GKLLT-GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLE 766 (817)
Q Consensus 688 gK~Lg-gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~ 766 (817)
||.++ .| +=+|.+++++++++.+... ....+++.+++...++.+++. .++..++..+..+...+ .
T Consensus 243 SK~~~~~G-lRvG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~----~ 308 (393)
T TIGR03538 243 SKRSNLPG-LRSGFVAGDAEILKAFLRY------RTYHGCAMPIPTQLASIAAWN---DEQHVRENRALYREKFA----A 308 (393)
T ss_pred hhhcCCcc-cceEEEecCHHHHHHHHHH------HHhhccCcCHHHHHHHHHHhc---ChHHHHHHHHHHHHHHH----H
Confidence 99865 47 7888899999988877421 111345567777777766652 22222222222222222 2
Q ss_pred HHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 767 LIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 767 l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
+.+.++++-.+ ....-|.++-+++..+ ...+...++ ++||.
T Consensus 309 ~~~~L~~~~~~-~~p~gg~f~~~~~~~~--------~~~~~~~l~~~~gV~ 350 (393)
T TIGR03538 309 VLEILGQVLDL-ELPDAGFYLWPKVPGD--------DEAFARALYEEENVT 350 (393)
T ss_pred HHHHHHhhCcc-cCCCeeEEEEEECCCC--------HHHHHHHHHHHCCEE
Confidence 33333332111 1233477888887511 244666665 46763
No 292
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.27 E-value=0.00027 Score=80.87 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=97.7
Q ss_pred cEEEEEEc-cccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCC-CCcee--ecccccC-
Q 003472 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGC-VPDIA--CYGKLLT- 692 (817)
Q Consensus 619 ~iAAvIvE-PV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv-~PDiv--tlgK~Lg- 692 (817)
++.+|++- | +.=-|.+. +.+-+++|.++|++||+++|.||+...+--.+.. ...+..+. ..+|+ +|||.+|
T Consensus 179 ~~k~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 179 KAKLLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred cceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34455555 7 44456665 7889999999999999999999998655111211 11111111 12233 8999996
Q ss_pred CCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~ 772 (817)
.| +=+|.+++++++++.+.... ...+.+.+.++.+++.++| ++++..+++.+..+...+ .+.+.++
T Consensus 256 ~G-lRiG~ii~~~~l~~~l~~~~------~~~~~~~~~~~q~aa~~~l---~~~~~~~~~~~~~~~~~~----~l~~~L~ 321 (410)
T PRK06290 256 TG-WRLAFVVGNELIVKAFATVK------DNNDSGQFIAIQKAGIYAL---DHPEITEKIREKYSRRLD----KLVKILN 321 (410)
T ss_pred ch-hheEeEEeCHHHHHHHHHHH------hccccCCcHHHHHHHHHHh---hCcHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57 67888999999998875311 1112223345555555554 332222333332222222 2334445
Q ss_pred cCCCcceEEee-eeEEEEEEecCCC-CCCcchHHHHHHHHHHcCC
Q 003472 773 SHRTVQRVVAL-GTLCAIELQAAGC-NAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 773 ~~p~V~~VrG~-Glm~gIel~~~~~-~~~~~~~~~~~~~~l~~Gv 815 (817)
++++ .-.... |+++-+.+.+... ...+.....+...++++|+
T Consensus 322 ~~g~-~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~ 365 (410)
T PRK06290 322 EVGF-KAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKL 365 (410)
T ss_pred hCCC-eecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCC
Confidence 5542 111222 4555567754310 0111245668888888864
No 293
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.26 E-value=0.00017 Score=82.04 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHhcc-ccCCCCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
++.+.+|+.+++.... ++....+.-+....+++.+.+..+-.. -+.++.++.++||+-.++.... .
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-----~------ 111 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-----N------ 111 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-----C------
Confidence 7789999999998764 333445566777788888887654111 1349999999999999988772 1
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecC--C-chhhhc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL--P-EWLYSK 571 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~--P-~~~~~~ 571 (817)
++ ..||..+-+|=.-. ..+.+.|... ..++. + ..|.
T Consensus 112 ---------pG-DeVlip~P~Y~~y~-~~~~~~gg~~----------------------------v~v~l~~~~~~f~-- 150 (393)
T COG0436 112 ---------PG-DEVLIPDPGYPSYE-AAVKLAGGKP----------------------------VPVPLDEEENGFK-- 150 (393)
T ss_pred ---------CC-CEEEEeCCCCcCHH-HHHHhcCCEE----------------------------EEEeCCcCccCCc--
Confidence 11 24777766664321 1222222110 01110 0 0110
Q ss_pred ccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEEccccccCCCcccCCHHHHHHHHHHH
Q 003472 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (817)
Q Consensus 572 ~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~i-AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc 650 (817)
.| .+.|++.+. + ++ +.+|.-|= .- -|.+. +++.+++|.++|
T Consensus 151 ---------~d------------------~~~l~~~i~-------~-ktk~i~ln~P~-NP-TGav~-~~~~l~~i~~~a 192 (393)
T COG0436 151 ---------PD------------------LEDLEAAIT-------P-KTKAIILNSPN-NP-TGAVY-SKEELKAIVELA 192 (393)
T ss_pred ---------CC------------------HHHHHhhcC-------c-cceEEEEeCCC-CC-cCcCC-CHHHHHHHHHHH
Confidence 01 255666654 2 34 44555773 33 35544 899999999999
Q ss_pred hhcCCcEEEeeeeeccccccccchhhhcCCCC--c----eeecccccC-CCCCcceEEEec-hHHHhhhcCCCccceeec
Q 003472 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D----IACYGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLH 722 (817)
Q Consensus 651 ~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~P--D----ivtlgK~Lg-gGy~PlsAvl~s-~~i~d~~~~~~~~~~~~h 722 (817)
++||+.+|.|||..++--.|..+. .-..+.+ | +-.|||..+ -| +=+|.+++. +++.+.+.. .+
T Consensus 193 ~~~~i~ii~DEiY~~l~yd~~~~~-s~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~-------~~ 263 (393)
T COG0436 193 REHDIIIISDEIYEELVYDGAEHP-SILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRK-------LK 263 (393)
T ss_pred HHcCeEEEEehhhhhcccCCCCcC-CHhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHHH-------HH
Confidence 999999999999999866664111 1122233 3 227899887 46 677889988 888877741 23
Q ss_pred cc-CCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEE-eeeeEEEEEEecCCCCCCc
Q 003472 723 GH-SYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCNAGY 800 (817)
Q Consensus 723 ~~-T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~ 800 (817)
.+ +++.+.++-.+|.++|+--++.+..+...+.-++-++ .+.+.+.+.+.+.-+. -.|.|..+-=.+..
T Consensus 264 ~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd----~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~----- 334 (393)
T COG0436 264 SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRD----LLVEALNEIGGLSVVKPPEGAFYLFPKIPEL----- 334 (393)
T ss_pred HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH----HHHHHHHhcCCeeeccCCCeeEEEEeecCCC-----
Confidence 34 4467777777887777643221122222211222222 3444555565444444 33555544322221
Q ss_pred chHHHHHHHHHHc
Q 003472 801 CLIELFLYNFLTT 813 (817)
Q Consensus 801 ~~~~~~~~~~l~~ 813 (817)
.....|..+++++
T Consensus 335 ~d~~~f~~~Ll~~ 347 (393)
T COG0436 335 LDSEEFAKKLLEE 347 (393)
T ss_pred CCHHHHHHHHHHh
Confidence 3445566666654
No 294
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.26 E-value=0.00019 Score=81.69 Aligned_cols=178 Identities=10% Similarity=0.037 Sum_probs=95.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCcee---ecccccC-CCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+++-| +.--|.+ .+.+-+++|.++|+++|+++|.||++..|-..+.. .....+.-.+.++ +|+|.++ .|
T Consensus 172 ~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG- 247 (403)
T TIGR01265 172 AIVVINP--SNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG- 247 (403)
T ss_pred EEEEecC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc-
Confidence 4555556 3445654 47777899999999999999999999877444422 1222221122343 7899954 47
Q ss_pred CcceEEEech--H-----HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IPLAATLATN--A-----VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~PlsAvl~s~--~-----i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
+=+|.+++.. + +.+.+.. ....+++.++++-+++.+.|+-- .+...++..+..+.-.+ .+.
T Consensus 248 lRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~----~l~ 315 (403)
T TIGR01265 248 WRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILENT-PQEFFDGKISVLKSNAE----LCY 315 (403)
T ss_pred ceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH----HHH
Confidence 6788888742 2 2332211 11124455677777666666431 11222232222222222 344
Q ss_pred HHHHcCCCcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCC
Q 003472 769 QQISSHRTVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGM 815 (817)
Q Consensus 769 ~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv 815 (817)
+.++.++.+.-++ .-|.++-+++.+.. ..+......+...++ ++||
T Consensus 316 ~~L~~~~~~~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~l~~~~gv 363 (403)
T TIGR01265 316 EELKDIPGLVCPKPEGAMYLMVKLELEL-FPEIKDDVDFCEKLVREESV 363 (403)
T ss_pred HHHhcCCCceecCCCceeEEEEeccccc-cCCCCCHHHHHHHHHHhCCE
Confidence 5555555443222 34778888876431 011112344555544 5676
No 295
>PLN02187 rooty/superroot1
Probab=98.25 E-value=0.00021 Score=83.10 Aligned_cols=185 Identities=11% Similarity=-0.016 Sum_probs=97.2
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc-hhhhcCCCCcee---ecccccC-
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT- 692 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~-a~e~~gv~PDiv---tlgK~Lg- 692 (817)
...+.+|+-|- .-.|.+. +.+-+++|.++|++||+++|.||+...|--.|..+ ....+.-.+.++ +|||.++
T Consensus 204 ~~~~v~i~nP~--NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINPN--NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCCC--CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 35678888883 3446555 78899999999999999999999997752223221 111221111233 7899955
Q ss_pred CCCCcceEEEec-h-HHH---hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 693 GGVIPLAATLAT-N-AVF---DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 693 gGy~PlsAvl~s-~-~i~---d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
.| +-+|.+++. + .++ +.+..- .. ....+.+.+.++-+++.++|+.- .++..+++.+..+.-.+ .+
T Consensus 281 pG-lRiG~~v~~~p~~~~~~~~~~~~~---~~-~~~~~~~~s~~~Q~a~~~~L~~~-~~~~l~~~~~~l~~~r~----~l 350 (462)
T PLN02187 281 PG-WKIGWIALNDPEGVFETTKVLQSI---KQ-NLDVTPDPATIIQAALPAILEKA-DKNFFAKKNKILKHNVD----LV 350 (462)
T ss_pred cc-ceeEEEEecCchhHHHHHHHHHHH---HH-hccccCCCCHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHH----HH
Confidence 57 788988873 2 222 233210 00 11122234677777777776421 11222333222222222 34
Q ss_pred HHHHHcCCCcceE-E-eeeeEEEEEEecCCCCCCc-chHHHHHHHHHHcCCC
Q 003472 768 IQQISSHRTVQRV-V-ALGTLCAIELQAAGCNAGY-CLIELFLYNFLTTGMH 816 (817)
Q Consensus 768 ~~~l~~~p~V~~V-r-G~Glm~gIel~~~~~~~~~-~~~~~~~~~~l~~Gv~ 816 (817)
.+.+++.|.+..+ . .-|.++-+++.... ..+. +..+.+.+.+.++||+
T Consensus 351 ~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-~~~~~~~~~~~~~ll~~~gV~ 401 (462)
T PLN02187 351 CDRLKDIPCVVCPKKPESCTYLLTKLELSL-MDNIKDDIDFCVKLAREENLV 401 (462)
T ss_pred HHHHhhCCCCcCCCCCCEeEEEEeecChhh-CCCCCCHHHHHHHHHhhCCEE
Confidence 4555556643221 2 23567777664321 1111 2334444555777863
No 296
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.24 E-value=1.3e-05 Score=84.48 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=90.6
Q ss_pred eeeccccC-hHHHHhHhcCCCCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCC
Q 003472 172 FAWEEAVS-PHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250 (817)
Q Consensus 172 ~~~~~~~~-p~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~ 250 (817)
+..+.+.. |...+++.-| .-..-.|+..+++...+. .|++||.++=|+..|.......+|+
T Consensus 127 ~~~k~~~g~~li~g~l~vG-e~~s~~lV~~~kk~a~E~------------~~~~IIDsaaG~gCpVi~sl~~aD~----- 188 (284)
T COG1149 127 YESKTDYGFPLISGRLNVG-EEESGKLVTALKKHAKEL------------ADLLIIDSAAGTGCPVIASLKGADL----- 188 (284)
T ss_pred EEEEcCCCceeEEeeccCC-ccccchHHHHHHHhhhhh------------cceeEEecCCCCCChHHHhhccCCE-----
Confidence 34444444 4455554412 223456667777766541 6999999999999997655555554
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
+|+|+-.---+++.....+|..+.-|++ .++|+||....+. .++++.++ ++|+++ ||+..+..
T Consensus 189 --ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i~ 253 (284)
T COG1149 189 --AILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDIP 253 (284)
T ss_pred --EEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhHH
Confidence 5788888888999999999999988877 7999999954444 77887766 899999 99987754
No 297
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.24 E-value=2.5e-05 Score=88.37 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=87.9
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCC-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~Lgg-G 694 (817)
.++.+|++|-+ ....+.+.+ +++|.++|+++| +++|-++ |.+-. ....+.-.|++++| |-++| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~-~s~~~-----~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATF-ASPYN-----QNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCC-CCccc-----CCchhcCCCEEEeecccccCCCC
Confidence 45778889986 444455554 999999999998 4679997 22222 23334567998765 77866 2
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
=+-.|++++ ++++++.+... ....-...+|..|+.++..|+.+.. ..++-.+++.. +.+.++.
T Consensus 214 d~~gG~vv~~~~~~~~~~~~~------~~~~G~~~~~~~A~l~~~gL~tL~~--R~~r~~~~a~~--------~a~~L~~ 277 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNNLVER------RKTLGSNPDPIQAYLALRGLKTLGL--RMEKHNKNGME--------LARFLRD 277 (384)
T ss_pred CceEEEEecCcHHHHHHHHHH------HHhcCCCCCHHHHHHHHhCCCcHHH--HHHHHHHHHHH--------HHHHHHc
Confidence 122344545 45555544210 0112233578888887777766633 12222333333 3445667
Q ss_pred CCCcceEE------------eeeeEEEEEEec
Q 003472 774 HRTVQRVV------------ALGTLCAIELQA 793 (817)
Q Consensus 774 ~p~V~~Vr------------G~Glm~gIel~~ 793 (817)
||.|..|. |.|.|+.|+|..
T Consensus 278 ~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 278 SKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred CCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 88776654 678899999963
No 298
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.23 E-value=8.1e-05 Score=83.09 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=150.8
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
.++|+..+ ...++. .|++.+++.+.+.......+ ...-..+|-+.|+++.+....+.++++++++++...+++
T Consensus 27 ~~i~l~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~Y---~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAM--ENPYRL--PAELRAELGERLAEVALNRY---PDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCC--CCCCCC--CHHHHHHHHHHhhccccccC---CCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 56776553 234444 58999999988764222111 112235677777777653211367778877788887776
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+.. .. ...|+..+-+|.+.. ......|..
T Consensus 100 ~~~-----~~----------------gd~vlv~~P~y~~~~-~~~~~~g~~----------------------------- 128 (356)
T PRK04870 100 ACA-----KP----------------GATVLAPEPGFVMYR-MSAKLAGLE----------------------------- 128 (356)
T ss_pred Hhc-----CC----------------CCEEEECCCCHHHHH-HHHHHcCCE-----------------------------
Confidence 551 11 135777666666422 111111111
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCCcccC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMV 638 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAv-IvEPV~qg~gG~~~p 638 (817)
.++.|..- + +. + + .+.+++.+.. .++.+| |.-| +.-.|.+.
T Consensus 129 -~~~i~~~~--------~--~~-~--------d--------~~~l~~~~~~-------~~~~~v~l~~p--~NPtG~~~- 170 (356)
T PRK04870 129 -FVGVPLTA--------D--FT-L--------D--------LPAMLAAIAE-------HRPALVFLAYP--NNPTGNLF- 170 (356)
T ss_pred -EEEecCCC--------C--CC-C--------C--------HHHHHHHhhc-------CCCCEEEEcCC--CCCCCCCC-
Confidence 11111000 0 00 0 0 1456666642 133344 4446 45557766
Q ss_pred CHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccCC-CCCcceEEEechHHHhhhcCC
Q 003472 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLTG-GVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 639 p~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lgg-Gy~PlsAvl~s~~i~d~~~~~ 714 (817)
+.+-++++.++| ++++|+||+...|.- .. +.. ...-.+.++ +++| .+. | +.+|.+++++++++.+...
T Consensus 171 ~~~~~~~i~~~~---~~~ii~De~y~~~~~-~~-~~~-~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~ 242 (356)
T PRK04870 171 DDADVERIIEAA---PGLVVVDEAYQPFAG-DS-WLP-RLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELDKV 242 (356)
T ss_pred CHHHHHHHHHHC---CCEEEEECCchhhcC-cc-hHH-HHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHHHc
Confidence 556666666666 789999999977732 11 111 111112332 7899 543 6 6788899999998877532
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAA 794 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~ 794 (817)
...+..+.++.+++.++++. .+..++..+..+...+ .+.+.+++.+.+.-....|.++.+.+. +
T Consensus 243 --------~~~~~~~~~~q~~a~~~l~~---~~~~~~~~~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~~~~-~ 306 (356)
T PRK04870 243 --------RPPYNVNVLTQATALFALEH---VDVLDAQAAQLRAERT----RLAAALAALPGVTVFPSAANFILVRVP-D 306 (356)
T ss_pred --------cCCCcCCHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HHHHHHHhCCCcEECCCCCeEEEEECC-C
Confidence 12344566666666666542 1222233333333333 233444445443222345666666654 1
Q ss_pred CCCCCcchHHHHHHHHHHcCCC
Q 003472 795 GCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 795 ~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
...+...+.++||.
T Consensus 307 --------~~~~~~~l~~~gI~ 320 (356)
T PRK04870 307 --------AAAVFDGLKTRGVL 320 (356)
T ss_pred --------HHHHHHHHHHCCEE
Confidence 24566777888874
No 299
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.23 E-value=4.3e-05 Score=85.52 Aligned_cols=249 Identities=16% Similarity=0.161 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|+|.+|+.++.-. |.. .-......++-+.|...++....+-+++..||+-|+|+|+.-.. .+
T Consensus 17 ~~~V~~am~~~~~~--h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----~p-------- 79 (383)
T COG0075 17 PPRVLLAMARPMVG--HRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----EP-------- 79 (383)
T ss_pred CHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----CC--------
Confidence 67777776654321 211 11234556677777777764212346778999999999998772 11
Q ss_pred CCccccccceEEEEEcCCccCCcccccccc-CCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
-.+++...++.-|.-..=+.-. |.. +..+..+ +-.
T Consensus 80 --------gdkVLv~~nG~FG~R~~~ia~~~g~~----------------------------v~~~~~~-wg~------- 115 (383)
T COG0075 80 --------GDKVLVVVNGKFGERFAEIAERYGAE----------------------------VVVLEVE-WGE------- 115 (383)
T ss_pred --------CCeEEEEeCChHHHHHHHHHHHhCCc----------------------------eEEEeCC-CCC-------
Confidence 2377777777766432211111 100 0011111 000
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
--+ .+.+++.|++. ..-+-++.+-.|. +.|+.-| +++|.++|++||++
T Consensus 116 ---~v~------------------p~~v~~~L~~~---~~~~~V~~vH~ET----STGvlnp----l~~I~~~~k~~g~l 163 (383)
T COG0075 116 ---AVD------------------PEEVEEALDKD---PDIKAVAVVHNET----STGVLNP----LKEIAKAAKEHGAL 163 (383)
T ss_pred ---CCC------------------HHHHHHHHhcC---CCccEEEEEeccC----cccccCc----HHHHHHHHHHcCCE
Confidence 000 25677777741 1223456666666 3577777 99999999999999
Q ss_pred EEEeeeeeccccccccchhhhcCCCCceee--cccccCC--CCCcceEEEechHHHhhhcCCCcc---------ceee--
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG--GVIPLAATLATNAVFDSFVGDSKL---------KALL-- 721 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~~~---------~~~~-- 721 (817)
+|+|=|-+ +| |..+-.+.||| |+++ -=|+|++ | +|.+..+++..+.+...... ..+.
T Consensus 164 ~iVDaVsS-~G--g~~~~vd~wgi--Dv~itgSQK~l~~PPG---la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~ 235 (383)
T COG0075 164 LIVDAVSS-LG--GEPLKVDEWGI--DVAITGSQKALGAPPG---LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEK 235 (383)
T ss_pred EEEEeccc-CC--CcccchhhcCc--cEEEecCchhccCCCc---cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhh
Confidence 99999885 52 44555666665 5554 4589987 6 57788999999988754321 0011
Q ss_pred -cccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 722 -HGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 722 -h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
..+-|+-..-...+-.++|+.+.+++ .++.+++-+.+++.+++.+.
T Consensus 236 ~~~~p~Tppv~~i~aL~~al~~i~~EG-le~r~~RH~~~~~a~r~~~~ 282 (383)
T COG0075 236 KGSTPYTPPVNLIYALREALDLILEEG-LEARIARHRRLAEALRAGLE 282 (383)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 12233344444555668999998887 45666666677776666543
No 300
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=98.22 E-value=4.1e-05 Score=83.65 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|++.+|+.++-.. ... .-+..+...+++++++++++. ..++|+.||+.||..||.... ++
T Consensus 13 ~~~m~eam~~a~~~-~~~--~YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~~-----~~-------- 73 (342)
T COG2008 13 TPEMREALAAANAV-GDD--VYGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAHC-----QP-------- 73 (342)
T ss_pred CHHHHHHHHhcccc-CCC--CCCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHhc-----CC--------
Confidence 89999999976532 111 113467788999999999984 789999999999999998771 11
Q ss_pred CCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d 577 (817)
...+.....-|=-+..+-. ...+.. ...++....-..
T Consensus 74 ---------~~~vi~~~~aHi~~~E~Ga---~~~~~~------------------------~~~~~~~~g~~G------- 110 (342)
T COG2008 74 ---------GESVICHETAHIYTDECGA---PEFFGG------------------------GQKLPIVPGADG------- 110 (342)
T ss_pred ---------CCeEEEeccccceecccCc---HHHHcC------------------------CceeccCCCCCC-------
Confidence 2334444444433322111 111100 011111100000
Q ss_pred ccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcE
Q 003472 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (817)
Q Consensus 578 ~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilL 657 (817)
.-+ .+.++..+..-. .+......+++|.- ..++|.+. |.++++++.++|+++|+.|
T Consensus 111 --klt------------------~e~v~~~i~~~d--~~~~~~~~~~~e~~-~te~GtVy-~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 111 --KLT------------------PEDVEAAIRPDD--IHHAPTPLAVLENT-ATEGGTVY-PLDELEAISAVCKEHGLPL 166 (342)
T ss_pred --CcC------------------HHHHHHhhcCCC--cccCCCceEEEeec-cCCCceec-CHHHHHHHHHHHHHhCCce
Confidence 001 244555554310 12334556677774 67888876 8999999999999999999
Q ss_pred EEeeeeeccccccccchhhhcCC-------CCcee--ecccccCCCCCcceEEE-echHHHhhhc
Q 003472 658 IFDEVFTGFWRLGVETTADLLGC-------VPDIA--CYGKLLTGGVIPLAATL-ATNAVFDSFV 712 (817)
Q Consensus 658 I~DEV~TGfGRtG~~~a~e~~gv-------~PDiv--tlgK~LggGy~PlsAvl-~s~~i~d~~~ 712 (817)
=+|=. |..- +.-.+|+ --|.+ +++|++ | .|.++++ ++.+....+.
T Consensus 167 HmDGA-----R~~n--A~valg~~~~~~~~~~D~v~~~~tK~g--~-~~~gAiv~gn~~~~~~a~ 221 (342)
T COG2008 167 HMDGA-----RLAN--ALVALGVALKTIKSYVDSVSFCLTKGG--G-APVGAIVFGNRDFAKRAR 221 (342)
T ss_pred eechH-----HHHH--HHHHcCCCHHHHHhhCCEEEEecccCC--c-ceeeeEEEcCHHHHHHHH
Confidence 99944 2211 1111221 23666 455554 4 5666665 6666666553
No 301
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.22 E-value=6.1e-05 Score=84.63 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=100.9
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCC
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy 695 (817)
+.+|++-.. +.-.|.+. +.+-++++.+.|+ +++++|+||+...|.. .. ......+..+.++ +|||.+| .|
T Consensus 153 ~~lv~l~~p-~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~-~~-~~~~~~~~~~~vi~~~SfSK~~gl~G- 226 (364)
T PRK04781 153 AKLVFLCSP-SNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSD-VP-SAVGLLARYDNLAVLRTLSKAHALAA- 226 (364)
T ss_pred CeEEEEcCC-CCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcC-Cc-chHHHHhhCCCEEEEecChhhccccc-
Confidence 344444332 56667777 5666677777775 4899999999977732 11 1112223334554 8999999 78
Q ss_pred CcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 696 IPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
+=+|.+++++++++.+... ..+|+.+.++..++.++| ++.+ .+.+.+..+.+.+ .++.+.+.+++.+
T Consensus 227 lRvGy~v~~~~l~~~l~~~--------~~~~~~~~~~~~~a~~~l---~~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~ 293 (364)
T PRK04781 227 ARIGSLIANAELIAVLRRC--------QAPYPVPTPCAALAEQAL---SAPA-LAVTARRVAEVRA-ERERLHAALAQLP 293 (364)
T ss_pred ceeeeeeCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHH---hccc-HHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 7889999999999988542 234566777776666655 3321 1222222222221 2234455556665
Q ss_pred Ccc-eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 TVQ-RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+. -....|.++-+++.+ ...+...+.++||+
T Consensus 294 ~~~~~~p~~g~f~~~~~~~---------~~~~~~~l~~~gI~ 326 (364)
T PRK04781 294 GVRRVYPSQGNFLLVRFDD---------AEAAFQALLAAGVV 326 (364)
T ss_pred CCCeECCCCCcEEEEEcCC---------HHHHHHHHHHCCeE
Confidence 443 234568888887742 24577778888874
No 302
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.21 E-value=2.6e-05 Score=88.85 Aligned_cols=167 Identities=16% Similarity=0.079 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh----hh
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DL 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~----e~ 677 (817)
+.+++.|.+ .+..+++.|.+|=.....|| .+.+...+++++++|++||+.||.|=.+. ||- + +|.- .+
T Consensus 157 ~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g~ 228 (450)
T TIGR02618 157 KKLQKLIDE----VGADKIPYICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQGY 228 (450)
T ss_pred HHHHHHhcc----ccCcccCceEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhcccccc
Confidence 567777763 22334555555554234455 45688899999999999999999999884 311 1 1100 01
Q ss_pred cCC-----------CCceeecccccCCCCCcceEEEe--chHHHhhhcCCCccceeecccCCCCCHH-HHHHHHHHHHHh
Q 003472 678 LGC-----------VPDIACYGKLLTGGVIPLAATLA--TNAVFDSFVGDSKLKALLHGHSYSAHAL-GCAAAAKSIKWF 743 (817)
Q Consensus 678 ~gv-----------~PDivtlgK~LggGy~PlsAvl~--s~~i~d~~~~~~~~~~~~h~~T~~gnPl-a~AAAlA~L~~l 743 (817)
.+. --|. |++|+.-.+..|+|.+++ ++++++....... .+..--||++=.. .++|..-+|+..
T Consensus 229 ~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~--~~eG~~tyGgla~r~~~ala~gL~e~ 305 (450)
T TIGR02618 229 EDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVV--VFEGMPSYGGLAGRDMEAMAIGIREA 305 (450)
T ss_pred cCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhh--hcCCccccCchhhhhHHHHHHHHHHh
Confidence 121 2355 677777555578888887 6666665533211 1112236666333 333333345444
Q ss_pred cCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee
Q 003472 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT 785 (817)
Q Consensus 744 ~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl 785 (817)
.++...++-..++++|++.|.+ . ..|++..+.|...
T Consensus 306 ~~~~y~~~r~~~a~~La~~L~~----~--Gvpv~~p~ggh~V 341 (450)
T TIGR02618 306 VDYEYIEHRVKQVRYLGDKLKA----A--GVPIVEPVGGHAV 341 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----C--CCcccCCCCcceE
Confidence 3434444445556676664332 2 4555555555433
No 303
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=98.20 E-value=7.2e-06 Score=94.50 Aligned_cols=114 Identities=15% Similarity=0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC--CCcee--ecccccCCCCCcceEEEechHHHhhhcCCCccc
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK 718 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv--~PDiv--tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~ 718 (817)
+++++++|++||++|++|++| ++|-.|-....+.++. ..|++ |++|+|.|-. .|.+++++++.+.+... .
T Consensus 237 l~~i~eia~~~gA~L~VD~AH-~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~~l~~~L~~a---~ 310 (493)
T PRK13580 237 FAKLREIADEVGAVLMVDMAH-FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKKEYADAVDKG---C 310 (493)
T ss_pred HHHHHHHHHHcCCEEEEECch-hhceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecHHHHHHHhhC---C
Confidence 999999999999999999999 5666663222222221 46876 7899995431 35688899988887422 1
Q ss_pred eeecccCCCCCHHHHHHHHHHHHHhcCcC---chhcHHHHHHHHHHHHHH
Q 003472 719 ALLHGHSYSAHALGCAAAAKSIKWFKDPQ---TNHNIIPERRILRELWDL 765 (817)
Q Consensus 719 ~~~h~~T~~gnPla~AAAlA~L~~l~~~~---l~~~l~~~~~~lg~~l~~ 765 (817)
++. ++..-.|..+|++.+ +..+.+++ ..+++.++++.+.+.|.+
T Consensus 311 P~i--~gg~l~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~ 357 (493)
T PRK13580 311 PLV--LGGPLPHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLK 357 (493)
T ss_pred Ccc--cCCCccHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHh
Confidence 222 222334544444554 55554433 578888888888775544
No 304
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.20 E-value=0.00034 Score=82.03 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=97.1
Q ss_pred cEEE-EEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhh---cC---CCCce----e
Q 003472 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADL---LG---CVPDI----A 685 (817)
Q Consensus 619 ~iAA-vIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~---~g---v~PDi----v 685 (817)
++.+ +|.-| +.=-|.+. +.+-+++|.++|++||+++|.||++..+-..+..+. .+. ++ +.||. .
T Consensus 199 ~~k~l~l~nP--~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 199 KVKGLILTNP--SNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CeeEEEEcCC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 4544 44555 34456655 788999999999999999999999987532343221 111 11 23452 3
Q ss_pred ecccccC-CCCCcceEEEe-chHHHhhhcCCCccceeecccCC-CCCHHHHHHHHHHHHHhcCcCchhc-HHHHHHHHHH
Q 003472 686 CYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNHN-IIPERRILRE 761 (817)
Q Consensus 686 tlgK~Lg-gGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~-l~~~~~~lg~ 761 (817)
+|||.+| .| +-+|.+++ .+.+.+.+... .++ ..+.++..++ ..+++++++.++ +.++.+.+.+
T Consensus 276 S~SK~~glpG-lRvG~li~~~~~l~~~~~~~---------~~~~~vs~~~Q~a~---~~~L~d~~~~~~~l~~~r~~l~~ 342 (496)
T PLN02376 276 SLSKDMGLPG-FRVGIVYSFNDSVVSCARKM---------SSFGLVSSQTQLML---ASMLSDDQFVDNFLMESSRRLGI 342 (496)
T ss_pred eccccCCCCc-ceEEEEEECCHHHHHHHHHH---------hhcCCCCHHHHHHH---HHHhCChhHHHHHHHHHHHHHHH
Confidence 7899998 78 78999998 45555544211 112 2334444433 334455444333 2232333322
Q ss_pred HHHHHHHHHHHcCCCcceEE-eeeeEEEEEEecCCCC-CCcchHHHHHHHHHHc-CC
Q 003472 762 LWDLELIQQISSHRTVQRVV-ALGTLCAIELQAAGCN-AGYCLIELFLYNFLTT-GM 815 (817)
Q Consensus 762 ~l~~~l~~~l~~~p~V~~Vr-G~Glm~gIel~~~~~~-~~~~~~~~~~~~~l~~-Gv 815 (817)
. .+.+.+.++++.+ .-+. .-|+++-+++...... ..++....+...++++ ||
T Consensus 343 r-~~~l~~~L~~~gi-~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV 397 (496)
T PLN02376 343 R-HKVFTTGIKKADI-ACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKL 397 (496)
T ss_pred H-HHHHHHHHHHCCC-cccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCE
Confidence 2 2234444554432 2232 3468889988543111 2233344566666654 75
No 305
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=98.20 E-value=0.00012 Score=82.45 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=94.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc-c-chhhhc-CCCCcee---ecccccC-CC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLL-GCVPDIA---CYGKLLT-GG 694 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~-~-~a~e~~-gv~PDiv---tlgK~Lg-gG 694 (817)
.+|..| +.-.|.+. +.+.+++|.++|++ ++++|+||+..-|- .+. . ...... ...+.++ +|||.+| .|
T Consensus 163 v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G 237 (371)
T PRK05166 163 LMFSNP--SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG 237 (371)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcch
Confidence 445666 45567766 66777888888865 89999999986552 221 1 111111 1123344 6999999 88
Q ss_pred CCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 695 VIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 695 y~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
+-+|.+++ ++++.+.+... ...++.+.++.+++.+.|. +.+..++..+.....++ .+.+.+++
T Consensus 238 -lRiG~~i~~~~~l~~~~~~~--------~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~----~l~~~L~~ 301 (371)
T PRK05166 238 -LRVGYGLVSDPELVGLLDRV--------RTPFNVNGAAQAAALAALD---DEEHLAKGVALALAERE----RLKKELAE 301 (371)
T ss_pred -hheeeeecCCHHHHHHHHHh--------ccCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 79998765 67887777421 1234567777666666663 22222333222222222 34445555
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++. .-+...|.++-+++.. ....+...++++||+
T Consensus 302 ~g~-~~~p~~g~fl~~~~~~--------~~~~l~~~l~~~gi~ 335 (371)
T PRK05166 302 MGY-RIAPSRANFLFFDARR--------PASAVAEALLRQGVI 335 (371)
T ss_pred CcC-eeCCCcCCEEEEeCCC--------CHHHHHHHHHHCCeE
Confidence 543 1123457776655421 235677888888874
No 306
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.20 E-value=7.3e-05 Score=82.83 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=95.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
+.+|+-| +.=-|.+. +.+-+++|.++|+++|+++|.||+..-|.-.+..-.....+-.+.++ +|||.+| .| +
T Consensus 125 ~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 200 (332)
T PRK06425 125 LIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-L 200 (332)
T ss_pred EEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-h
Confidence 4566677 44456655 78889999999999999999999987663222111112222223444 8899999 88 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++.+++++.+... ..++..+.+++++ +.....+...+++.+.-+..++ .+.+.+++++.
T Consensus 201 RiGy~v~~~~li~~l~~~--------~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~r~----~l~~~L~~~g~ 264 (332)
T PRK06425 201 RIGYIATDDYNMKISRKI--------TEPWSVCDPAIDF----IRSIDLDYVAKHSLDIMENERS----YLINNLEAMGF 264 (332)
T ss_pred hheeeecCHHHHHHHHHc--------CCCCccCHHHHHH----HHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHCCC
Confidence 889999999998887531 1223334433222 2211111111222222222222 34445555432
Q ss_pred cceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-+ ...|.++-+.+. + ...+...++++||.
T Consensus 265 -~~~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gi~ 295 (332)
T PRK06425 265 -RAAGDPSANFITFMIP-D--------AHDFYSYLLKNGIL 295 (332)
T ss_pred -EECCCCCceEEEEEcC-C--------HHHHHHHHHHCCeE
Confidence 212 245677666664 1 25677888888874
No 307
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.19 E-value=0.00028 Score=79.57 Aligned_cols=170 Identities=10% Similarity=0.096 Sum_probs=98.8
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-C
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-G 693 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-g 693 (817)
.++.+|++-+- +.=-|.+. +.+-++.+.++| +++++|.||+...|. +.. ......-.+.++ +|||.+| .
T Consensus 167 ~~~k~i~l~~P-~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~--~~~-~~~~~~~~~~~ivi~SfSK~~g~~ 239 (374)
T PRK02610 167 PPVRVVFVVHP-NSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFS--QTT-LVGELAQHPNWVILRTFSKAFRLA 239 (374)
T ss_pred CCceEEEEeCC-CCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccC--ccc-hHHHHhcCCCEEEEEecchhccCc
Confidence 34556654443 56567776 566678888887 499999999997662 211 111111123433 7899996 6
Q ss_pred CCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc
Q 003472 694 GVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS 773 (817)
Q Consensus 694 Gy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~ 773 (817)
| +-+|.+++++++++.+.... ..++.+.++-.++.++|+.. +...+..+...+. +..+.+.+++
T Consensus 240 G-lRiG~~v~~~~l~~~l~~~~--------~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~-r~~l~~~L~~ 303 (374)
T PRK02610 240 A-HRVGYAIGHPELIAVLEKVR--------LPYNLPSFSQLAAQLALEHR------QELLAAIPEILQE-RDRLYQALQE 303 (374)
T ss_pred c-cceeeeecCHHHHHHHHHhc--------CCCCCCHHHHHHHHHHhcCH------HHHHHHHHHHHHH-HHHHHHHHHh
Confidence 8 79999999999998875321 23445666666666665421 1222222222222 2334455555
Q ss_pred CCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 774 HRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 774 ~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.-...-|.++-+++... .....+...+.++||+
T Consensus 304 ~~~~~~~p~~g~f~~~~l~~~------~~~~~~~~~l~~~gi~ 340 (374)
T PRK02610 304 LPQLRVWPSAANFLYLRLSQD------AALAALHQALKAQGTL 340 (374)
T ss_pred CCCcEeCCCcceEEEEeCCCC------CCHHHHHHHHHHCCEE
Confidence 554332233466767776532 2345667778888874
No 308
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=98.19 E-value=4.5e-05 Score=83.29 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=114.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 440 ~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
..+|....|++|++.+=|+ --.+.+.||-.|.-.|+--..+ .| ..||+-..-|=|+
T Consensus 59 i~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la~-----aG----------------D~iVss~~LYGGT 114 (426)
T COG2873 59 IMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLAG-----AG----------------DNIVSSSKLYGGT 114 (426)
T ss_pred ccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhcc-----CC----------------CeeEeeccccCch
Confidence 4577788999999997663 3567788999888888876621 11 3678877777653
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
..-.+.+- +..|. +++|-|.+ +
T Consensus 115 -~~lf~~tl-------------~~~Gi------------------------------~v~fvd~~----------d---- 136 (426)
T COG2873 115 -YNLFSHTL-------------KRLGI------------------------------EVRFVDPD----------D---- 136 (426)
T ss_pred -HHHHHHHH-------------HhcCc------------------------------EEEEeCCC----------C----
Confidence 33222220 00111 12232221 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcC
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~g 679 (817)
.+.++++++ ++..||.+|.+ ..-++.++. ++.+.++|+++|++||+|-..+. . +.++-+.
T Consensus 137 -~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at----p--yl~rP~~ 196 (426)
T COG2873 137 -PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT----P--YLCRPIE 196 (426)
T ss_pred -HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHHHcCCcEEEecCCCc----c--eecchhh
Confidence 145666775 46789999998 555667766 89999999999999999998842 2 4455566
Q ss_pred CCCcee--ecccccCC-CCCcceEEEechHHHhhh
Q 003472 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 680 v~PDiv--tlgK~Lgg-Gy~PlsAvl~s~~i~d~~ 711 (817)
.-.||| ...|=+|| | -.||.+++..--+|+-
T Consensus 197 hGADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~ 230 (426)
T COG2873 197 HGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWT 230 (426)
T ss_pred cCCCEEEEeecccccCCc-cccceEEEeCCccccc
Confidence 678998 56898998 7 7888888877777776
No 309
>PRK06855 aminotransferase; Validated
Probab=98.18 E-value=0.00073 Score=77.86 Aligned_cols=278 Identities=13% Similarity=0.072 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcc--ccCCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 003472 418 QIELARDMGYTAARFG--HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~--~~~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~ 494 (817)
.+.+.+++.+.+.... .+....+..+....+++.+.+..+.. .-+.+++++++.+|...++.++ ..
T Consensus 50 p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~------~~----- 118 (433)
T PRK06855 50 PDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL------RR----- 118 (433)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhc------CC-----
Confidence 6777878887664321 11112234456667777776643311 0257999999999988876432 11
Q ss_pred ccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccc
Q 003472 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (817)
Q Consensus 495 ~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~ 574 (817)
...|+..+-+|++.........+.. .+++|-..
T Consensus 119 -----------Gd~Vlv~~P~Y~~~~~~~~~~~g~~------------------------------~v~v~~~~------ 151 (433)
T PRK06855 119 -----------EARVIGPSPAYSTHSSAEAAHAGYP------------------------------PVTYRLDP------ 151 (433)
T ss_pred -----------CCeEEEeCCCCchHHHHHHHhcCCe------------------------------EEEEeccc------
Confidence 1368888899987321111111110 01111000
Q ss_pred cccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC
Q 003472 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (817)
Q Consensus 575 ~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G 654 (817)
++ .|. -| .+.|++.+.. .+..-+.+++-|- .=-|.+. +.+.+++|.++|++||
T Consensus 152 ------~~---~~~--~d--------~~~l~~~~~~-----~~~~~~i~l~~P~--NPTG~~~-s~~~~~~l~~~a~~~~ 204 (433)
T PRK06855 152 ------EN---NWY--PD--------LDDLENKVKY-----NPSIAGILLINPD--NPTGAVY-PKEILREIVDIAREYD 204 (433)
T ss_pred ------cc---CCC--CC--------HHHHHHHHhc-----CCCceEEEEECCC--CCCCcCC-CHHHHHHHHHHHHHcC
Confidence 00 000 00 2556666652 2233456778883 3345544 8899999999999999
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCc---e--eecccccC-CCCCcceEEEec-----h---HHHhhhcCCCcccee
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPD---I--ACYGKLLT-GGVIPLAATLAT-----N---AVFDSFVGDSKLKAL 720 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PD---i--vtlgK~Lg-gGy~PlsAvl~s-----~---~i~d~~~~~~~~~~~ 720 (817)
+++|.||+...+-..+..+. ....+.+| | -.|||.++ .| +=+|.+++. + .+++.+...
T Consensus 205 ~~II~De~Y~~l~~~~~~~~-sl~~~~~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~------ 276 (433)
T PRK06855 205 LFIICDEIYNNIVYNGKKTV-PLSEVIGDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNA------ 276 (433)
T ss_pred CEEEEeccccccccCCCCCC-CHHHHcCcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHh------
Confidence 99999999987732332111 01112233 3 27899997 78 788888872 2 223333110
Q ss_pred ecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-eeEEEEEEec
Q 003472 721 LHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-GTLCAIELQA 793 (817)
Q Consensus 721 ~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-Glm~gIel~~ 793 (817)
...+.+.+.++..++.+.| ++.++.+.+.+..+.+.+. ++.+.+.+++.+.+.-.+.. |+++-+.+.+
T Consensus 277 -~~~~~~~~~~~Q~a~~~~l---~~~~~~~~~~~~~~~~~~r-~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~ 345 (433)
T PRK06855 277 -KMIEVCSTTLPQMAIPRIM---SHPEYKNYLKERNKRYEKR-SNIAYEKLKDVPGLKVNRTNGAFYMTVVFED 345 (433)
T ss_pred -hccccCCChHHHHHHHHhh---cCCcHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeeccCCCeeEEEeecccc
Confidence 1123345666666655554 3422222333333333332 22344555555433222333 5777777754
No 310
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.17 E-value=0.00016 Score=80.35 Aligned_cols=162 Identities=12% Similarity=0.149 Sum_probs=95.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..++.-| +.=-|...+ . +++.+++ ++++++|.||+..-|. +..+. ....-.+.++ +|||.+| .| +
T Consensus 141 ~i~i~nP--~NPTG~~~s-~---~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-l 209 (335)
T PRK14808 141 VVFIPNP--NNPTGHVFE-R---EEIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-Q 209 (335)
T ss_pred EEEEeCC--CCCCCCCcC-H---HHHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-c
Confidence 4566666 344466664 3 4555556 5899999999997772 22111 1111123433 7899999 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
=+|.+++.+++++.+... . .+++.+.++..++.++++.. + .+.+..+.+.+. ++.+.+.+++.+.
T Consensus 210 RvG~~v~~~~~~~~l~~~-------~-~~~~~~~~~q~a~~~~l~~~---~---~~~~~~~~~~~~-r~~l~~~L~~~g~ 274 (335)
T PRK14808 210 RIGYVVSSEKFIDAYNRV-------R-LPFNVSYVSQMFAKVALDHR---E---IFEERTKFIVEE-RERMKSALREMGY 274 (335)
T ss_pred ceEEEEeCHHHHHHHHHh-------c-CCCCCCHHHHHHHHHHHhCH---H---HHHHHHHHHHHH-HHHHHHHHHHCCC
Confidence 889999999999888532 1 23556677777777776522 1 122222222222 2234445555442
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+.+... ....+...+.++||+
T Consensus 275 -~~~~~~g~f~~~~l~~~-------~~~~~~~~l~~~Gi~ 306 (335)
T PRK14808 275 -RITDSRGNFVFIFMEKE-------EKERLLEHLRAKNIA 306 (335)
T ss_pred -EECCCCCeEEEEeCCCc-------cHHHHHHHHHHCCeE
Confidence 22235678887777532 225677888888974
No 311
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.15 E-value=4.5e-05 Score=85.25 Aligned_cols=167 Identities=17% Similarity=0.180 Sum_probs=97.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+|.-| ..--|.+. +.+-+++|.+.|++ ++++|+||++.-|. +...........|.++ +|+|.+| .| +
T Consensus 148 lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG-l 220 (351)
T PRK01688 148 VVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG-L 220 (351)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-H
Confidence 4566777 45556665 67778888888876 68999999997663 2111222222245654 8999998 56 5
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++++++++.+... ...|..+.++.++|.++|+ +.+ .+.+.+..+.+.+ -++.+.+.+.+.+.
T Consensus 221 RiGy~i~~~~~i~~l~~~--------~~~~~v~~~~~~~a~~~L~---~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~~ 287 (351)
T PRK01688 221 RCGFTLANEEVINLLLKV--------IAPYPLSTPVADIAAQALS---PQG-IAAMRERVAEINA-NRQWLIAALKEIPC 287 (351)
T ss_pred HHhHHhCCHHHHHHHHhc--------cCCCCCCHHHHHHHHHHHh---cch-HHHHHHHHHHHHH-HHHHHHHHHHhCCC
Confidence 677789999998887532 1235566666666666654 211 1223333333221 12234445555554
Q ss_pred cceE-EeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRV-VALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~V-rG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
+..+ ...|.++-+.+.+ ...+...++++||+
T Consensus 288 ~~~~~ps~~nfi~~~~~~---------~~~l~~~L~~~gi~ 319 (351)
T PRK01688 288 VEQVFDSETNYILARFTA---------SSAVFKSLWDQGII 319 (351)
T ss_pred CCeECCCCCcEEEEEcCC---------HHHHHHHHHHCCeE
Confidence 3222 2335565565531 25677788888874
No 312
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.14 E-value=0.00021 Score=87.69 Aligned_cols=278 Identities=11% Similarity=0.015 Sum_probs=153.0
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.+...+|.+.|++++| ++.+.+ -+||+.|+-+++... |.|+..+|. ++|++ +....+-||+.
T Consensus 542 lq~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge------------~~r~~-vLIp~saHgtN 604 (954)
T PRK12566 542 RAMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQ------------SQRDI-CLIPSSAHGTN 604 (954)
T ss_pred HHHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE-EEecccccccC
Confidence 4556789999999998 456655 559999988888888 788776664 44544 55566888866
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.......|.. .+..|..- -... |
T Consensus 605 pasa~~~Gie------------------------------Vv~Vp~D~-----------~G~i--------D-------- 627 (954)
T PRK12566 605 PASAQMAGMR------------------------------VVIVECDP-----------DGNV--------D-------- 627 (954)
T ss_pred HHHHHHCCCE------------------------------EEEeccCC-----------CCCc--------C--------
Confidence 5442222211 11111000 0001 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~g 679 (817)
.+.|++.+++ ...++++|++--. ...|+.. .-+++|.++|+++|+++++|=++. +.+..... -.
T Consensus 628 le~L~a~I~~-----~~~~laaVmiT~P-nt~Gv~e----~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P-----g~ 692 (954)
T PRK12566 628 LDDLKAKAAA-----AGDRLSCLMITYP-STHGVYE----EGIREICEVVHQHGGQVYMDGANLNAQVGLARP-----AD 692 (954)
T ss_pred HHHHHHHhhc-----cCCCEEEEEEEec-CcCceec----chHHHHHHHHHHcCCEEEEEeeChhhccCCCCh-----hh
Confidence 2567777762 3567888877543 3444433 338999999999999999999985 22111110 12
Q ss_pred CCCceeecc--cccC----CCCCc-ceEEEechHHHhhhcCCC-------ccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 680 CVPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVGDS-------KLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 680 v~PDivtlg--K~Lg----gGy~P-lsAvl~s~~i~d~~~~~~-------~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
+-.|++++. |.++ +| .| ++.+.+++.+...+.+.. +.+....+.+..++.+.+.+|..-|..+=.
T Consensus 693 ~GADi~~~s~HKtf~~P~G~G-GP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~ 771 (954)
T PRK12566 693 IGADVSHMNLHKTFCIPHGGG-GPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGP 771 (954)
T ss_pred cCCCEEEecCCcccCcCccCC-CCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCH
Confidence 345998775 8664 45 45 555577776666554321 011122334455665556666666655533
Q ss_pred cCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEee-e---eEEEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 746 PQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVAL-G---TLCAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 746 ~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~-G---lm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
+ ..++...+.....|+.++|.+ .++... .+. | --+.+.+..-+...+ .....+.+++++.|||.
T Consensus 772 e--Lk~aa~~ailnAnYla~rL~~---~~~v~~--~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~d~Giha 839 (954)
T PRK12566 772 Q--LADASEVAILSANYLANQLGG---AFPVLY--RGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLMDYGFHA 839 (954)
T ss_pred H--HHHHHHHHHHHHHHHHHHhHh---hCCCCc--CCCCCCeeeEEEEEccccccccC-CCHHHHHHHHHHCCcEE
Confidence 2 233344334455666555533 233322 211 1 112333321110111 23356888888999873
No 313
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.13 E-value=0.00025 Score=88.55 Aligned_cols=181 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...++.+.|++++| ++.+.+ .++|+.|+.++|..+ |.|...+|. ..| ++|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG---~d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~------------~~r-~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITG---YDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------GHR-DVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHC---CCCEEECccHHHHHHHHHHHHH-HHHhhccCC------------CCC-CEEEEEchhhhhhH
Confidence 456688899999998 345554 568888888888666 776544432 123 45667788888766
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.++...|.. +..++.... ..+ | .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~-------------G~i--------D--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN-------------GNI--------D--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC-------------CCc--------C--------H
Confidence 554433221 011111000 000 0 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.|++.+++ +..++++|++ -|- ..|++..+ +++|.++|+++|+++++|-++.+ +-.|.. .--..
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~---~pg~~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA---RPGDI 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC---Chhhc
Confidence 556666753 2345666554 442 33444455 89999999999999999999952 112211 11122
Q ss_pred CCceeecc--cccC----CCCCc-ceEEEechHHHhhhcC
Q 003472 681 VPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFVG 713 (817)
Q Consensus 681 ~PDivtlg--K~Lg----gGy~P-lsAvl~s~~i~d~~~~ 713 (817)
-.|+++++ |.++ +| -| +|.+.+++.+...+.+
T Consensus 693 GADi~~~s~HK~f~~P~G~G-GPg~G~l~vr~~l~p~lpg 731 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGG-GPGVGPIGVKAHLAPFLPG 731 (954)
T ss_pred CCCEEEecCcccCCCCcCCC-CCceEEEeecccccccCCC
Confidence 36888775 8774 34 34 4456667776655543
No 314
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.11 E-value=5.7e-05 Score=86.35 Aligned_cols=167 Identities=17% Similarity=0.063 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccc-------cccccch
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW-------RLGVETT 674 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfG-------RtG~~~a 674 (817)
+.|++.|.+ .+..+++.+.+|=.+...|| .+.|...+++++++|++||+.||.|=.+. +| |-.....
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itvn~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~ 237 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTVNLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQD 237 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEecccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCC
Confidence 567777764 23345554444433244455 45578899999999999999999999984 43 1111111
Q ss_pred hh------hcCCCCceeecc--cccCCCCCcc-eEEEe-chHHHhhhcCCCccceee-cccCCCCCHH-HHHHHHHHHHH
Q 003472 675 AD------LLGCVPDIACYG--KLLTGGVIPL-AATLA-TNAVFDSFVGDSKLKALL-HGHSYSAHAL-GCAAAAKSIKW 742 (817)
Q Consensus 675 ~e------~~gv~PDivtlg--K~LggGy~Pl-sAvl~-s~~i~d~~~~~~~~~~~~-h~~T~~gnPl-a~AAAlA~L~~ 742 (817)
.. ..+---|++||| |.++ .|+ |++++ .+++++.+... .... .--||+|-.. -++|.--.|+.
T Consensus 238 ~~i~ei~~e~~s~aD~~t~S~~K~~~---~~~GG~i~t~D~eL~~~~r~~---~~~~eG~~tygg~~grd~~alAvgl~E 311 (460)
T PRK13237 238 KSIKEIVHEMFSYADGCTMSGKKDCL---VNIGGFLAMNDEELFDEAKEL---VVVYEGMPSYGGMAGRDMEAMAIGIEE 311 (460)
T ss_pred CcHhHHhhhccCcCcEEEEeCCCCCC---CCCceEEEECCHHHHHHHHHh---ccccCCCcCCCChhhhHHHHHHhHHHh
Confidence 00 011135888765 4443 344 33444 44555544321 0111 2237766433 22221112433
Q ss_pred hcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE
Q 003472 743 FKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL 786 (817)
Q Consensus 743 l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm 786 (817)
..+++..+.-.+++++|++.|.+ ...|++..+.|.+.+
T Consensus 312 ~~~~~y~~~ri~~~~~l~~~L~~------~Gvpv~~p~ggH~v~ 349 (460)
T PRK13237 312 SVQYEYIEHRVGQVRYLGEKLLA------AGVPIVEPVGGHAVF 349 (460)
T ss_pred hchHHHHHHHHHHHHHHHHHHHH------CCCceecCCCceEEE
Confidence 43445555555666666664433 246667666664443
No 315
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.10 E-value=0.00033 Score=86.42 Aligned_cols=280 Identities=11% Similarity=-0.006 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccc
Q 003472 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~g 522 (817)
+...+|.+.|++++|-+ .-.++.++|+.|+-+++..+ |.|+..+|. . +..++....+-||+.-.
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge------------~-~R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGE------------N-HRNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCC------------C-CCCEEEEEccccCcCHH
Confidence 45668999999999842 24567788888888888888 777655543 2 34667788899997654
Q ss_pred cccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHH
Q 003472 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (817)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~ 602 (817)
+....|.. +..++... -..+ | .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~-------------~G~i--------D--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQ-------------DGNI--------D--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCC-------------CCCc--------C--------HH
Confidence 43333211 01111100 0001 0 25
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeec-cccccccchhhhcCCC
Q 003472 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCV 681 (817)
Q Consensus 603 ~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TG-fGRtG~~~a~e~~gv~ 681 (817)
.|++.+++ +++++++|++--. .. -|.+.++ +++|.++|+++|..+++|=+|.. .+.. ...-...
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~p-st-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l-----~~Pg~~G 681 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYP-ST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGL-----TSPGDLG 681 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeC-Cc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCC-----CCccccC
Confidence 67777763 3457888777443 23 3554432 89999999999999999999953 2111 1111234
Q ss_pred Cceeec--ccccC-----CCCCcceEEEechHHHhhhcCCCc---------cce-eecccCCCCCHHHHHHHHHHHHHhc
Q 003472 682 PDIACY--GKLLT-----GGVIPLAATLATNAVFDSFVGDSK---------LKA-LLHGHSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 682 PDivtl--gK~Lg-----gGy~PlsAvl~s~~i~d~~~~~~~---------~~~-~~h~~T~~gnPla~AAAlA~L~~l~ 744 (817)
.|++++ .|.|+ || -=+|.+.+++++...+.++.- ... ..-.+.+.++.+.+-.+...|..+=
T Consensus 682 aDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG 760 (939)
T TIGR00461 682 ADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG 760 (939)
T ss_pred CCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHC
Confidence 699877 59887 44 346777778776555543210 000 0122335677777777778888875
Q ss_pred CcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeee-E--EEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGT-L--CAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 745 ~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Gl-m--~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
.+++. ++.+.+-....|+.++|.+ .++.+... ..|. + +-+++...+ ...-.....+.+++++.|+|+
T Consensus 761 ~~GL~-~~a~~ailnAnYl~~rL~~---~~~~l~~~-~~~~~~hEfv~~~~~~~-~~~g~~~~dIakrL~d~G~ha 830 (939)
T TIGR00461 761 NEGLP-KASVVAILNANYMATRLKD---HYPILFVG-TLKHVAHECILDLRPLK-AKTGIEAIDVAKRLQDYGFHA 830 (939)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhc---cCcccccC-CCCceeEEEEEeccchh-hhcCCCHHHHHHHHHhCCeec
Confidence 54442 2233233334444444332 22322211 1122 2 222222111 011145788999999999985
No 316
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.09 E-value=0.00021 Score=79.61 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=100.3
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
..+++-|- .=.|.+. +.+.++++.+.|.++++++|+||+...|.. ..- .....+ .++++ +|+|.+| .| +
T Consensus 133 ~v~l~nPn--NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~~s-~~~~~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNPN--NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLP-AAS-LAAHTD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCC-ccc-chhccC-CCCEEEEecChhhcCCcc-h
Confidence 57888883 4446655 666788888889899999999999876621 111 111111 24443 8999998 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCC
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRT 776 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~ 776 (817)
-+|.+++.+++++.+... ...|.-+.++.+++.++|+ +.++.+++.+..+.-+++ +.+.++++..
T Consensus 206 RiGy~v~~~~li~~l~~~--------~~~~~vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~----l~~~L~~~g~ 270 (339)
T PRK06959 206 RAGFVLAAPALLAALRDA--------LGAWTVSGPARHAVRAAFA---DAAWQAAMRERLAADGAR----LAALLRAHGF 270 (339)
T ss_pred heEEEecCHHHHHHHHHh--------cCCCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHH----HHHHHHHCCC
Confidence 889999999999988532 1345567777777777763 333333333333333333 3344444432
Q ss_pred cceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 777 VQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 777 V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.+...|.++-+.+. ....+...+.++||+
T Consensus 271 --~~~~~~~f~~~~~~---------~~~~l~~~l~~~GI~ 299 (339)
T PRK06959 271 --AVHATPLFSWTDDP---------RAAALHAALARRGIW 299 (339)
T ss_pred --CccCcceEEEEeCC---------CHHHHHHHHHhCCeE
Confidence 12223555555442 124577888889985
No 317
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.09 E-value=2.7e-05 Score=86.02 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~--~~v~gvi~n~~~~-~~ 293 (817)
.+|+|||-..|++.++ .....+++.+.--||+|+....-++ +.+..+++.++..| .++.|+|+|+... ..
T Consensus 147 ~~DyVliD~~gdv~~g----gf~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~ 222 (329)
T cd02033 147 DFDYVLLDFLGDVVCG----GFGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE 222 (329)
T ss_pred cCCEEEEecCCcceec----cccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcch
Confidence 4899999998765432 1223334444446788888888777 45677888888764 5789999999843 33
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.+.+.+.+ ++|++| ||+.+...
T Consensus 223 ie~~ae~l--gi~vLg~IP~D~~V~ 245 (329)
T cd02033 223 AQAFAAHA--GIPILAAIPADEELR 245 (329)
T ss_pred HHHHHHHh--CCCEEEECCCCHHHH
Confidence 45566666 999999 99987754
No 318
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=98.09 E-value=0.00049 Score=77.22 Aligned_cols=289 Identities=13% Similarity=0.117 Sum_probs=170.3
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alk 479 (817)
..+|+.+. -+.+|-. |.+.+++.+.++.+..+ ..+...+|.+.+++..+....+.|+..|...|..+..++
T Consensus 23 ~~i~LssN--enP~gp~--~~~~~~~~~~~~~~~rY-----Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSN--ENPYGPP--PKVIEAIRAALDKLNRY-----PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCC--CCCCCCC--HHHHHHHHHHHHhhccC-----CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 36676662 3446654 89999998887744332 233567888888887762113578888888888888777
Q ss_pred HHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcc
Q 003472 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (817)
Q Consensus 480 lA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (817)
+.. . ++ .+|+...-+|.--...+... |.. +
T Consensus 94 ~~~-----~---------------~g-d~vl~~~Ptf~~Y~~~a~~~-g~~----------------------------~ 123 (356)
T COG0079 94 AFV-----E---------------PG-DTVLIPEPTFSMYEIAAQLA-GAE----------------------------V 123 (356)
T ss_pred Hhh-----c---------------CC-CEEEEcCCChHHHHHHHHhc-CCe----------------------------E
Confidence 762 1 11 47777777775321111111 110 1
Q ss_pred eeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCC
Q 003472 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (817)
Q Consensus 560 ~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp 639 (817)
+.++..+ +. .| .+.+...+. .+.-..+|+-|- --. |... +
T Consensus 124 ~~v~~~~-~~-----------~d------------------~~~~~~~~~-------~~~~lv~i~nPN-NPT-G~~~-~ 163 (356)
T COG0079 124 VKVPLKE-FR-----------LD------------------LDAILAAIR-------DKTKLVFLCNPN-NPT-GTLL-P 163 (356)
T ss_pred EEecccc-cc-----------cC------------------HHHHHHhhh-------cCCCEEEEeCCC-CCC-CCCC-C
Confidence 1222111 10 01 122323332 112246788885 444 4444 5
Q ss_pred HHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCc-ee---ecccccC-CCCCcceEEEechHHHhhhcCC
Q 003472 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 640 ~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv---tlgK~Lg-gGy~PlsAvl~s~~i~d~~~~~ 714 (817)
.+-++.+.+.|.+ ++++|+||+..=|+. --...... .++ ++ ||||++| .| +=+|.+++++++++.+..-
T Consensus 164 ~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~v 237 (356)
T COG0079 164 REELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNKV 237 (356)
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHHh
Confidence 6677777888877 999999999987754 21222222 445 54 8999877 45 5677799999999998642
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceE-EeeeeEEEEEEec
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRV-VALGTLCAIELQA 793 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~V-rG~Glm~gIel~~ 793 (817)
-..|.-|-++.++|.++|+.- +..+...+....-++ ++.+.+++.+ +..| ...+-++-+++.+
T Consensus 238 --------r~p~~v~~~a~~aa~aal~~~---~~~~~~~~~~~~~r~----rl~~~l~~~~-~~~v~pS~aNFvlv~~~~ 301 (356)
T COG0079 238 --------RPPFNVSSPALAAAIAALRDA---DYLEESVERIREERE----RLYAALKALG-LFGVFPSQANFVLVRVPD 301 (356)
T ss_pred --------cCCCCCCHHHHHHHHHHcccH---HHHHHHHHHHHHHHH----HHHHHHHhCC-CCeecCCCCcEEEEECCC
Confidence 345777888888888887543 223333333333333 4556666666 3322 3336666666654
Q ss_pred CCCCCCcchHHHHHHHHHHcCCC
Q 003472 794 AGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 794 ~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. . ...+...++++||+
T Consensus 302 ~------~-~~~l~~~L~~~gii 317 (356)
T COG0079 302 A------E-AAALAEALLKKGIL 317 (356)
T ss_pred c------c-HHHHHHHHHHCCEE
Confidence 2 3 45677777777764
No 319
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.08 E-value=0.00043 Score=86.29 Aligned_cols=280 Identities=12% Similarity=0.003 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f~-~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...++.+.|++++| ++.|.|. |+|+.+-++-+.++ |.|...+|. . +.++|....+-||+-.
T Consensus 568 ~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi-~~~~~~~Gd------------~-~r~~vli~~~aH~sn~ 630 (993)
T PLN02414 568 EMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVI-RAYHLSRGD------------H-HRNVCIIPVSAHGTNP 630 (993)
T ss_pred HHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHH-HHHHhccCC------------C-CCCEEEeCCCcCccCH
Confidence 456689999999998 5788775 55555444444444 555543332 1 2356777789999766
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
......|.. +..++..... .-| .
T Consensus 631 a~a~~~G~~----------------------------vv~v~~d~~G-----------~vD------------------l 653 (993)
T PLN02414 631 ASAAMCGMK----------------------------IVVVGTDAKG-----------NIN------------------I 653 (993)
T ss_pred HHHHHCCCE----------------------------EEEeccCCCC-----------CcC------------------H
Confidence 544442211 0111110000 001 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~ 681 (817)
+.|++.++. +.+++++|++-=. ...||...+ +++|.++|+++|+++++|=+|.- |......-....
T Consensus 654 e~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~----a~~~l~~p~~~G 719 (993)
T PLN02414 654 EELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANMN----AQVGLTSPGFIG 719 (993)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCHH----hccCcCCccccC
Confidence 567777762 3456788777654 677888877 99999999999999999999951 111111112234
Q ss_pred Cceeec--ccccC----CCCCcceEEEechHHHhhhcCCC--ccceee------cccC----CCCCHHHHHHHHHHHHHh
Q 003472 682 PDIACY--GKLLT----GGVIPLAATLATNAVFDSFVGDS--KLKALL------HGHS----YSAHALGCAAAAKSIKWF 743 (817)
Q Consensus 682 PDivtl--gK~Lg----gGy~PlsAvl~s~~i~d~~~~~~--~~~~~~------h~~T----~~gnPla~AAAlA~L~~l 743 (817)
.|++++ .|.++ +|=--+|.+.+++++...+.+.. ....+. ...| +.|+.+.+.+|.+-+..+
T Consensus 720 aD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l 799 (993)
T PLN02414 720 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM 799 (993)
T ss_pred CCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH
Confidence 688866 68665 23133778888888777665421 101000 0123 335666666777777666
Q ss_pred cCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEe-eee-E--EEEEEecCCCCCCcchHHHHHHHHHHcCCCC
Q 003472 744 KDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVA-LGT-L--CAIELQAAGCNAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 744 ~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG-~Gl-m--~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
=.+++ .++.+.+.....|+.++|.+ .++... .| .|. + +.+.+..-+...+ .....+.+++++.|||+
T Consensus 800 G~~Gl-~~~a~~a~~nAnYl~~rL~~---~~~~~~--~~~~~~~~hEfv~~~~~l~~~~g-~~~~di~krL~d~Giha 870 (993)
T PLN02414 800 GSEGL-TDASKIAILNANYMAKRLEG---HYPVLF--RGKNGTCAHEFIIDLRPFKNTAG-IEPEDVAKRLMDYGFHA 870 (993)
T ss_pred CHhHH-HHHHHHHHHHHHHHHHHHHh---hCCccc--cCCCCCeeeeEEEeccccccccC-CCHHHHHHHHHHcCcEE
Confidence 44333 22344455555555555433 222211 11 121 1 1122221100001 23366888889999974
No 320
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00032 Score=77.20 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc-ccchhhhcC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG 679 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG-~~~a~e~~g 679 (817)
.+.||+.+.+ +....-|++-| +.-+|- +...+.|++|.+||.+||+.+|.||||+=+=-.| +.+.+. .
T Consensus 147 ~~~LE~~~~~------~~vkl~iLCnP--HNP~Gr-vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ 215 (388)
T COG1168 147 FDALEKAFVD------ERVKLFILCNP--HNPTGR-VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--S 215 (388)
T ss_pred HHHHHHHHhc------CCccEEEEeCC--CCCCCc-cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchh--h
Confidence 3678888873 22346788888 455554 4589999999999999999999999998773345 222222 2
Q ss_pred CCCc-----eeec--ccccC-CCCCcceEEEechH-HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcC--cCc
Q 003472 680 CVPD-----IACY--GKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKD--PQT 748 (817)
Q Consensus 680 v~PD-----ivtl--gK~Lg-gGy~PlsAvl~s~~-i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~--~~l 748 (817)
+.|+ |+|+ +|++. .| +-+|.++.+.+ +.+.+... ..-....+-|.+++-|..++.+.=+. +.+
T Consensus 216 ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~-----l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L 289 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKR-----LKRNGLHGPSALGIIATEAAYNQGEPWLDEL 289 (388)
T ss_pred cChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHH-----HHHhcCCCCchHHHHHHHHHHHhchHHHHHH
Confidence 3333 3343 68876 46 56666665544 33444321 11223445688888888887654322 122
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE-EEEEEec
Q 003472 749 NHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL-CAIELQA 793 (817)
Q Consensus 749 ~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm-~gIel~~ 793 (817)
.+-+..|-..+.+.+. +..|.|.-..=.|.. .-+++..
T Consensus 290 ~~yl~~N~~~~~~~l~-------~~~P~v~v~~p~gTYL~WLD~r~ 328 (388)
T COG1168 290 LEYLKDNRDYVADFLN-------KHLPGVKVTEPQGTYLAWLDCRE 328 (388)
T ss_pred HHHHHHHHHHHHHHHH-------hhCCCcEEecCCCceeeeeeccc
Confidence 3333333333333221 244666555556664 3455544
No 321
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.06 E-value=0.0008 Score=77.91 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCcEEEEEE-ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hh---hcCC-C-Cc-e---
Q 003472 617 SGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--AD---LLGC-V-PD-I--- 684 (817)
Q Consensus 617 ~~~iAAvIv-EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e---~~gv-~-PD-i--- 684 (817)
+.++.++++ -| +.--|... +++.+++|.++|++|++.+|.||+...+--.+..|. .+ ..+. . ++ +
T Consensus 198 ~~~vk~lll~nP--~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 198 NIRVRGVLITNP--SNPLGATV-QRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred CCCeeEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEE
Confidence 345655544 45 33345544 789999999999999999999999976311111111 11 1121 1 44 2
Q ss_pred eecccccC-CCCCcceEEEe-chHHHhhhcCCCccceeecccCCC-CCHHHHHHHHHHHHHhcCcCchhc-HHHHHHHHH
Q 003472 685 ACYGKLLT-GGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYS-AHALGCAAAAKSIKWFKDPQTNHN-IIPERRILR 760 (817)
Q Consensus 685 vtlgK~Lg-gGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~-gnPla~AAAlA~L~~l~~~~l~~~-l~~~~~~lg 760 (817)
..+||.+| .| +=+|.+++ .+++.+.+... +.|. -+.++..+ +..+++++++.++ +.++.+++.
T Consensus 275 ~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~---------~~~~~~s~~~q~~---~~~~L~d~~~~~~~l~~~r~~l~ 341 (447)
T PLN02607 275 YSLSKDLGLPG-FRVGTIYSYNDKVVTTARRM---------SSFTLVSSQTQHL---LASMLSDEEFTENYIRTNRERLR 341 (447)
T ss_pred EcchhcCCCCc-ceEEEEEEcCHHHHHHHHHH---------hhcCCCCHHHHHH---HHHHhCCchhHHHHHHHHHHHHH
Confidence 37899998 78 78998887 56676655321 2222 23333333 3344556554432 333334443
Q ss_pred HHHHHHHHHHHHcCCCcceEEe-eeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVA-LGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG-~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+... .+.+.++++.+ .-++. -|+++-++|.+.-.....+....+..++++ .||+
T Consensus 342 ~~~~-~~~~~L~~~gi-~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~ 397 (447)
T PLN02607 342 KRYE-MIVQGLRRAGI-ECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLN 397 (447)
T ss_pred HHHH-HHHHHHHhCCC-CcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEE
Confidence 3222 24445555543 33344 488899998542101112222334445554 5763
No 322
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=98.05 E-value=0.00012 Score=77.67 Aligned_cols=245 Identities=13% Similarity=0.034 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
-.++.+|+.++.---.. -+..+...+|+++.++++|+ +-.+|++||+..|..||+.= ..++|.
T Consensus 35 TdeMr~am~eA~vgDdV----yGeD~tt~rLE~~vA~l~GK---EAgLFv~SGTmgNllaIm~H----c~~rg~------ 97 (384)
T KOG1368|consen 35 TDEMRRAMAEASVGDDV----YGEDPTTNRLEQRVAELFGK---EAGLFVPSGTMGNLLAIMVH----CHQRGS------ 97 (384)
T ss_pred hHHHHHHHhhcccCccc----ccCCccHHHHHHHHHHHhCc---cceeeecccccccHHHHHHH----hcCCCc------
Confidence 35677777765432111 12345677999999999995 67999999999999999754 122221
Q ss_pred CCccccccceEEEEEcCCccCCccccccc-cCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccc
Q 003472 498 KDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (817)
Q Consensus 498 ~~~~~~~~r~~II~~~gsyHG~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~ 576 (817)
.-|+....-.|=+-.|+++. +|... .| ..+.++.+
T Consensus 98 ---------eii~gd~~HI~~~E~gg~s~l~gv~~------------------~t---------v~~e~dgt-------- 133 (384)
T KOG1368|consen 98 ---------EIIVGDRAHIHRYEQGGISQLAGVHV------------------RT---------VKNENDGT-------- 133 (384)
T ss_pred ---------eEEeccchheeehhccChhhhcccee------------------Ee---------eeeCCCCe--------
Confidence 12333333333322222221 11100 00 00111111
Q ss_pred cccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCc
Q 003472 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (817)
Q Consensus 577 d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gil 656 (817)
+ .++.+|+.+..-....+..-...|.+|-- +...|-...|-+|+.++.+||+++|+.
T Consensus 134 ------m----------------~ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vlPle~~~~v~~lak~~glk 190 (384)
T KOG1368|consen 134 ------M----------------DLEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVLPLEELDRVKALAKRHGLK 190 (384)
T ss_pred ------e----------------eHHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEeeHHHHHHHHHHHhccCCe
Confidence 1 03667777763111122234568889986 554444455899999999999999998
Q ss_pred EEEeeeeeccccccccchhhhcCC-------CCce--eecccccCCCCCcc-eEEEechHHHhhhcCCCccceeecccCC
Q 003472 657 VIFDEVFTGFWRLGVETTADLLGC-------VPDI--ACYGKLLTGGVIPL-AATLATNAVFDSFVGDSKLKALLHGHSY 726 (817)
Q Consensus 657 LI~DEV~TGfGRtG~~~a~e~~gv-------~PDi--vtlgK~LggGy~Pl-sAvl~s~~i~d~~~~~~~~~~~~h~~T~ 726 (817)
|=+|-+-- |-+.-..|| .-|- +|+|||||. |+ |.++++++.++......+ ..|.-+
T Consensus 191 LH~DGARi-------~NAavasgV~vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~RK----alGGGm 256 (384)
T KOG1368|consen 191 LHMDGARI-------FNAAVASGVPVKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFRK----ALGGGM 256 (384)
T ss_pred eecchhhh-------hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHHH----HhcCch
Confidence 88775421 222223333 2354 499999985 33 467788887765421111 123333
Q ss_pred CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHH
Q 003472 727 SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILREL 762 (817)
Q Consensus 727 ~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~ 762 (817)
--.-+-||||+-+|+.--. +...-.+++..+.++
T Consensus 257 RQsGvLaaaaLval~~~~~--~L~~dHk~A~~lAe~ 290 (384)
T KOG1368|consen 257 RQSGVLAAAALVALDENVP--LLRADHKRAKELAEY 290 (384)
T ss_pred hHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHH
Confidence 3345677777777654311 223334555555553
No 323
>PRK05839 hypothetical protein; Provisional
Probab=98.05 E-value=0.00094 Score=75.30 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=59.6
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhc---CC-C-Ccee---eccccc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLL---GC-V-PDIA---CYGKLL 691 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~---gv-~-PDiv---tlgK~L 691 (817)
+.+|.-| +.=.|.+. +.+.+++|.++|+++|+++|.||+...|...+..... ... +. . +.++ +|||.+
T Consensus 158 ~v~i~nP--~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~ 234 (374)
T PRK05839 158 LVILNSP--NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS 234 (374)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc
Confidence 3455666 44456655 7888999999999999999999998766211221111 110 11 1 2333 789997
Q ss_pred C-CCCCcceEEEechHHHhhhc
Q 003472 692 T-GGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~~ 712 (817)
+ .| +-+|.+++++++.+.+.
T Consensus 235 ~~~G-lRiG~ii~~~~~~~~~~ 255 (374)
T PRK05839 235 SAPG-LRSGFIAGDASILKKYK 255 (374)
T ss_pred CCcc-ceeEEEecCHHHHHHHH
Confidence 5 57 78999999999988774
No 324
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.05 E-value=3.5e-05 Score=83.95 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 003472 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~ 497 (817)
+|++.+|+.+.. .++.. -...+...+|++++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 8 ~~~m~~a~~~a~--~gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~-----~~------- 68 (290)
T PF01212_consen 8 TPAMLEAMAAAN--VGDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR-----PG------- 68 (290)
T ss_dssp -HHEEHHHHHTT--SB-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH-----TT-------
T ss_pred CHHHHHHHHccc--cCCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh-----cC-------
Confidence 899999994433 22222 23478889999999999994 6788999999999999998831 11
Q ss_pred CCccccccceEEEEE-cCCccCCccccc-cccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccccc
Q 003472 498 KDTTEKCIELKVLAL-KGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (817)
Q Consensus 498 ~~~~~~~~r~~II~~-~gsyHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~ 575 (817)
..||.- ..-+|....++. .++|. ..++.|....
T Consensus 69 ---------~~vi~~~~aHi~~~E~ga~~~~~G~------------------------------~~~~l~~~~~------ 103 (290)
T PF01212_consen 69 ---------ESVICADTAHIHFDETGAIEELSGA------------------------------KLIPLPSDDD------ 103 (290)
T ss_dssp ---------EEEEEETTEHHHHSSTTHHHHHTTC------------------------------EEEEEBECTG------
T ss_pred ---------CceeccccceeeeeccchhhHhcCc------------------------------EEEECCCccc------
Confidence 123332 222333333433 22321 1111221100
Q ss_pred ccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC
Q 003472 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (817)
Q Consensus 576 ~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi 655 (817)
..+ ..+.|++.++... .+..+++.|.+|-- ....|-.+.+.+.+++|+++|++||+
T Consensus 104 -----G~l----------------~~~~l~~~~~~~~--~h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 104 -----GKL----------------TPEDLEAAIEEHG--AHHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp -----TBB-----------------HHHHHHHHHHHT--GTSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHHT-
T ss_pred -----CCC----------------CHHHHHHHhhhcc--ccCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhCce
Confidence 000 0255666666421 13467999999986 44433445588999999999999999
Q ss_pred cEEEeeeeeccccccc-----cchhhhcCCCCceee--cccccCCCCCcceE-EEechHHHh
Q 003472 656 PVIFDEVFTGFWRLGV-----ETTADLLGCVPDIAC--YGKLLTGGVIPLAA-TLATNAVFD 709 (817)
Q Consensus 656 lLI~DEV~TGfGRtG~-----~~a~e~~gv~PDivt--lgK~LggGy~PlsA-vl~s~~i~d 709 (817)
.|.+|=. |... +.....+----|+++ +.|.+| .|.++ ++++++.++
T Consensus 160 ~lhmDGA-----Rl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g---~~~Gavl~~~~~~i~ 213 (290)
T PF01212_consen 160 PLHMDGA-----RLANAAAALGVSLAEIAAGADSVSFGGTKNGG---APGGAVLAGNKEFIA 213 (290)
T ss_dssp EEEEEET-----THHHHHCHHHHHHHHHHTTSSEEEEETTSTT----SSSEEEEEESHHHHH
T ss_pred EEEEehh-----hHHHhhhcccccHHHHhhhCCEEEEEEEcccc---cccceEEEechHHHH
Confidence 9999954 3221 001111112458774 456543 44444 556777444
No 325
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.05 E-value=3.6e-05 Score=76.79 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=61.5
Q ss_pred CEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--C----HH
Q 003472 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--N----EV 295 (817)
Q Consensus 222 d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--~----~~ 295 (817)
|+|||.+.+++... ........ --+|+|+.....++..+...++.++..+.+..++|+|++... . .+
T Consensus 64 d~viiD~p~~~~~~------~~~~l~~a-d~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG------FITAIAPA-DEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH------HHHHHHhC-CcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 89999998764322 22222222 248899999999999999999999887788999999998322 1 24
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 003472 296 PLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 296 ~l~~~~~~~~pvlg-iP~~~~ 315 (817)
.+++++ +.|+++ ||+.+.
T Consensus 137 ~~~~~~--~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEIL--GVPLLGVIPEDPA 155 (179)
T ss_pred HHHHHh--CCCEEEEecCCHH
Confidence 456666 899999 887554
No 326
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.01 E-value=0.00063 Score=78.29 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChH-HHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGs-eA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.....++++.+++++|......++++++|+ .|+..|+..+ |.. + +....||.-..+ |-++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~al-r~~-~----------------~~gd~VI~p~~t-h~S~ 164 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSAL-RHK-R----------------PKAKYVIWPRID-QKSC 164 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHc-CCc-C----------------CCCCEEEEECcC-hHHH
Confidence 345567788888888742223688999999 6888887766 321 0 011245555554 7777
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.-++.+.|.... +++. +..+.. |+ + |
T Consensus 165 ~kAi~~~G~~pv--------------~Vd~-----------~~d~~~------------~~-i--------D-------- 190 (444)
T TIGR03531 165 IKAISTAGFEPR--------------VIET-----------VLDGDE------------LT-T--------D-------- 190 (444)
T ss_pred HHHHHHcCCeEE--------------Eeee-----------eecCcC------------CC-c--------C--------
Confidence 777666653210 0000 000111 11 0 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhh---
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--- 677 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~--- 677 (817)
.+.|++.|.+ ..+..+.+|+..|- .+..|.. +-+++|.++|++||+++|+|+++. ++- .+..+.
T Consensus 191 ~e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~~----ddL~eIa~la~k~gI~lIvDaAyg-~~~---~~~~~~~~~ 257 (444)
T TIGR03531 191 VEDIERAIEE----IGPDNILCVLSTTS-CFAPRSP----DDIEEIAKICANYDIPHIVNNAYG-LQS---NKYMELINK 257 (444)
T ss_pred HHHHHHHHHh----ccCCCEEEEEEcCC-cCCCcch----hCHHHHHHHHHHcCCEEEEECcCc-CcC---hhhhhhhhc
Confidence 2567777763 22356788887774 3333333 349999999999999999999994 311 111111
Q ss_pred -cCC-CCceeec--ccccCCCCCcceEEEe-chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcH
Q 003472 678 -LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 678 -~gv-~PDivtl--gK~LggGy~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l 752 (817)
..+ ..|++++ .|.+... ..-+++++ .+++++.+... ..+ .....| +..+..+.+ .+-.++ ++++
T Consensus 258 g~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~~~------y~g-~~~~s~-~~~~~~~ll-~~G~~g-~~~l 326 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEISKS------YPG-RASASP-SLDVLITLL-SLGSKG-YLEL 326 (444)
T ss_pred cccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHHHh------ccC-CCCChH-HHHHHHHHH-HhCHHH-HHHH
Confidence 112 3577755 5766531 11344546 56776666321 111 222222 222222222 332222 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-cceEEeeeeEEEEEEec
Q 003472 753 IPERRILRELWDLELIQQISSHRT-VQRVVALGTLCAIELQA 793 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~~~l~~~p~-V~~VrG~Glm~gIel~~ 793 (817)
.+.-..+.+++.+.|.+..+++.. +-++...-.-+++.+..
T Consensus 327 i~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~ 368 (444)
T TIGR03531 327 LKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLST 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccc
Confidence 455555666677777666666653 66676666777777764
No 327
>PRK07908 hypothetical protein; Provisional
Probab=97.99 E-value=0.00073 Score=75.29 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=87.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.++.-| +.--|.+.+ .++|.++|++ ++++|+||++.-| ..|..-.....+ .++++ +++|.+| .| +-
T Consensus 143 i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-lR 212 (349)
T PRK07908 143 VVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-LR 212 (349)
T ss_pred EEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-ce
Confidence 344466 455677776 3577888865 7788899999655 223321111122 23443 6799998 78 78
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++++.+.... ..+..+++..+++.+.++- ......+++.+..+..++ .+.+.++++. +
T Consensus 213 iG~~~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~r~----~l~~~L~~~~-~ 278 (349)
T PRK07908 213 VGYALGAPDVLARLTRGR--------AHWPVGTLQLEAIAACCAP-RAVAEAAADAARLAADRA----EMVAGLRAVG-A 278 (349)
T ss_pred eeeeecCHHHHHHHHhcC--------CCCCccHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHH----HHHHHHHhCC-c
Confidence 999999999988875321 1234455555544333320 000111222222222233 3344454442 2
Q ss_pred ceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-+. .-|.++-+.+.+ ...+...+.++||+
T Consensus 279 ~~~~p~~g~~~~~~~~~---------~~~~~~~l~~~gI~ 309 (349)
T PRK07908 279 RVVDPAAAPFVLVRVPD---------AELLRKRLRERGIA 309 (349)
T ss_pred EeccCCCceEEEEECCc---------HHHHHHHHHhCCEE
Confidence 1112 347777776643 23455666677763
No 328
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=97.95 E-value=0.0021 Score=74.90 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=97.2
Q ss_pred cEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhhc------CC-CCc----e
Q 003472 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLL------GC-VPD----I 684 (817)
Q Consensus 619 ~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~~------gv-~PD----i 684 (817)
++. .+|+-| +.=-|.+. +.+.+++|.++|++||+++|.||+...+--.+..+. .+.. +. .++ +
T Consensus 191 ~~k~v~l~nP--~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l 267 (468)
T PLN02450 191 KVKGVLITNP--SNPLGTTT-TRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV 267 (468)
T ss_pred CeeEEEEecC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence 454 455556 33345554 788999999999999999999999976522332221 1111 11 123 3
Q ss_pred eecccccC-CCCCcceEEEechH-HHhhhcCCCccceeecccCC-CCCHHHHHHHHHHHHHhcCcCchh-cHHHHHHHHH
Q 003472 685 ACYGKLLT-GGVIPLAATLATNA-VFDSFVGDSKLKALLHGHSY-SAHALGCAAAAKSIKWFKDPQTNH-NIIPERRILR 760 (817)
Q Consensus 685 vtlgK~Lg-gGy~PlsAvl~s~~-i~d~~~~~~~~~~~~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~-~l~~~~~~lg 760 (817)
-+|||.+| .| +=+|.+++.++ +.+.+... .++ ..+.++..++.+. ++++++.+ .+.++.+.+.
T Consensus 268 ~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~---------~~~~~~s~~~Q~a~~~~---L~~~~~~~~~l~~~~~~l~ 334 (468)
T PLN02450 268 YSLSKDLGLPG-FRVGAIYSNDEMVVSAATKM---------SSFGLVSSQTQYLLSAL---LSDKKFTKNYLEENQKRLK 334 (468)
T ss_pred EeccccCCCCC-ccEEEEEECCHHHHHHHHHH---------hhcCCCCHHHHHHHHHH---hCCchhHHHHHHHHHHHHH
Confidence 38999998 88 79999999754 45544211 112 2345555554444 44433322 2333344443
Q ss_pred HHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHH-cCCC
Q 003472 761 ELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLT-TGMH 816 (817)
Q Consensus 761 ~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~-~Gv~ 816 (817)
+. ++.+.+.++++.+....-.-|+++-+.+.+.-.....+....+..++++ +||.
T Consensus 335 ~r-r~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~ 390 (468)
T PLN02450 335 QR-QKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLN 390 (468)
T ss_pred HH-HHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEE
Confidence 32 2234455555543111123477888888542111122222345555554 6763
No 329
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=97.95 E-value=0.0027 Score=73.76 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=182.6
Q ss_pred ceeecccccccc-CCCCCCCHHHHHHHHHHHHhcccc-----CCCCCCChHHHHHHHHHHhhcCCC-CcceEEEeCChHH
Q 003472 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGST 472 (817)
Q Consensus 400 ~ylD~~sg~~~~-~LGh~~hP~V~~Ai~~q~~~~~~~-----~~~~~~~~~~~eLae~L~~~~~~~-~~~~v~f~~SGse 472 (817)
..+||..|+-.. .+. ...+.+++.+.+...... ....+..+...++++.+...-|-. ..+.++++++..+
T Consensus 90 ~~i~f~~g~p~~~~fp---~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 90 SVIDFAGGLPDPSLFP---LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred ceecCCCCCCCcccCC---HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 678887765221 223 346666666555433221 111233456667888887322211 1247888888888
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCc
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (817)
|.+..+++.. . . ...|++=+-+|||.. .++...|.
T Consensus 167 al~l~~~~l~----~-p----------------Gd~v~vE~PtY~~~~-~~~~~~g~----------------------- 201 (459)
T COG1167 167 ALDLLLRLLL----D-P----------------GDTVLVEDPTYPGAL-QALEALGA----------------------- 201 (459)
T ss_pred HHHHHHHHhC----C-C----------------CCEEEEcCCCcHHHH-HHHHHcCC-----------------------
Confidence 8887777761 1 1 135666677888732 12222111
Q ss_pred ccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~ 632 (817)
-.+++|..- + +.+ .+.||+.+++ .++.++.+-|..|.=
T Consensus 202 -------~~~~vp~d~------------~--------G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNP 239 (459)
T COG1167 202 -------RVIPVPVDE------------D--------GID--------PEALEEALAQ-------WKPKAVYVTPTFQNP 239 (459)
T ss_pred -------cEEecCCCC------------C--------CCC--------HHHHHHHHhh-------cCCcEEEECCCCCCC
Confidence 112222100 0 011 2567777763 378899999987777
Q ss_pred CCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch--hhhcCCCCc----eeecccccCCCCCcceEEEechH
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPD----IACYGKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 633 gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a--~e~~gv~PD----ivtlgK~LggGy~PlsAvl~s~~ 706 (817)
-|... +.+=-++|.++|++||+.+|=||+..=| |....-. ...++ .++ +-+|||.|.=| +=+|.+++.++
T Consensus 240 tG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el-~~~~~p~~~l~~ld-~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~ 315 (459)
T COG1167 240 TGVTM-SLERRKALLALAEKYDVLIIEDDYYGEL-RYDGPPPPPLKALD-APGRVIYLGSFSKTLAPG-LRLGYVVAPPE 315 (459)
T ss_pred CCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhh-hcCCCCCCChHhhC-CCCCEEEEeeehhhcccc-cceeeeeCCHH
Confidence 78777 7888999999999999999999999544 4432211 12221 234 33999999998 78999999999
Q ss_pred HHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC-CCcceEEe--e
Q 003472 707 VFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-RTVQRVVA--L 783 (817)
Q Consensus 707 i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~-p~V~~VrG--~ 783 (817)
+++.+... .+..+.+.+.+..++...- +.+..+..++.+......++ ++.+.+.++++ |....+.. -
T Consensus 316 ~~~~~~~~------k~~~~~~~s~~~Q~~la~~---l~~G~~~~hl~~lR~~y~~r-r~~l~~~L~~~~~~~~~~~~p~g 385 (459)
T COG1167 316 LIEKLLRL------KQAADLGPSSLSQAALAAF---LLSGHYDRHLRRLRREYARR-RDALLEALAEYLPELATWTRPEG 385 (459)
T ss_pred HHHHHHHH------HHHhcCCCChHHHHHHHHH---HHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCeeeecCCc
Confidence 99888532 2445566666665544333 33323333443333333332 22345556555 42333322 3
Q ss_pred eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 784 GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 784 Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
|+++-+++.+. -....++.+++++|+.
T Consensus 386 G~flwl~l~~~------~~~~~l~~~a~~~gv~ 412 (459)
T COG1167 386 GLFLWLELPEG------IDARELLAAALEKGVV 412 (459)
T ss_pred eEEEEEEcCCC------CCHHHHHHHHHHCCCE
Confidence 89999999876 3467899999999873
No 330
>PLN02672 methionine S-methyltransferase
Probab=97.93 E-value=0.00098 Score=83.50 Aligned_cols=228 Identities=12% Similarity=0.032 Sum_probs=130.1
Q ss_pred EEEeCccCccccceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCC--cceEE
Q 003472 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (817)
Q Consensus 388 ~l~D~dG~~~~~~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~--~~~v~ 465 (817)
++++.+|. .+|++..+- ..++ . .|.|.+|+.+.+.+..+. ....+....+++.+++..|-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE--~d~p-p-Pp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDE--SFLP-V-PSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCC--CCCC-C-CHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 35556676 788887642 2344 3 799999999887664331 1234567789999988655321 12577
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCc
Q 003472 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (817)
Q Consensus 466 f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (817)
++++..++...++... .. . ...|+...-+|..-... ....|..
T Consensus 759 vt~Gs~elL~lll~aL----l~-p----------------GD~VLVp~PtY~~Y~~~-a~~~Ga~--------------- 801 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC----VQ-E----------------GGTLCFPAGSNGTYVSA-AKFLKAN--------------- 801 (1082)
T ss_pred EeCCHHHHHHHHHHHH----cC-C----------------CCEEEEeCCChHHHHHH-HHHcCCE---------------
Confidence 7776666666665544 11 1 13677777777653221 1111111
Q ss_pred cccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 003472 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (817)
Q Consensus 546 ~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIv 625 (817)
+..++.... ++ |.. | .+.+++.+.. ..+.+.+|+
T Consensus 802 -------------vv~Vpl~~e-------------~g----f~l--D--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 802 -------------FRRIPTKSS-------------DG----FKL--T--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred -------------EEEEecccc-------------cC----CCC--C--------HHHHHHHhcc------CCCCEEEEE
Confidence 011111000 00 000 0 1446666542 122357788
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccc---hh----hhc-CCCC--cee---ecccccC
Q 003472 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TA----DLL-GCVP--DIA---CYGKLLT 692 (817)
Q Consensus 626 EPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~---a~----e~~-gv~P--Div---tlgK~Lg 692 (817)
-|- +.=-|.+. +.+-+++|.++|++||+++|.||++.++--.|..+ .. ..+ ...+ .++ +|||.++
T Consensus 836 nPn-hNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 884 33446554 88999999999999999999999998663334321 11 111 1112 232 6798877
Q ss_pred C-CCCcceEEEech-HHHhhhc
Q 003472 693 G-GVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 693 g-Gy~PlsAvl~s~-~i~d~~~ 712 (817)
- | +-+|.+++.+ ++++.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~ 934 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFH 934 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHH
Confidence 4 7 7888899864 4788774
No 331
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.93 E-value=0.00047 Score=74.36 Aligned_cols=62 Identities=19% Similarity=0.071 Sum_probs=46.9
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEcc
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFED 288 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~ 288 (817)
+|+|||.+. |........-++... --||+|+..+.-++..+..+++.++..|.+++|+|+|+
T Consensus 213 yD~ViiD~p-----p~~~~~d~~~~~~~~-d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 213 YDVVIVDTP-----SAEHSSDAQIVATRA-RGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CCEEEEeCC-----CcccccHHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999999994 322111223344433 36788999988899999999999999999999999996
No 332
>PRK06836 aspartate aminotransferase; Provisional
Probab=97.92 E-value=0.0026 Score=72.22 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhh------cCCcEEEeeeeeccccccccchhhhcCCCCc-ee--ecccc
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKL 690 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~------~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-iv--tlgK~ 690 (817)
+.+|++-.. +.-.|... |.+-+++|.++|++ ||+++|.||+...|-..|.... ......+. ++ +++|.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 445555443 45556655 77888999999999 8999999999976622221111 00111123 33 68999
Q ss_pred cC-CCCCcceEEEechHHHh
Q 003472 691 LT-GGVIPLAATLATNAVFD 709 (817)
Q Consensus 691 Lg-gGy~PlsAvl~s~~i~d 709 (817)
+| .| +-+|.+++++++.+
T Consensus 246 ~~~pG-lRiG~~~~~~~~~~ 264 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEMED 264 (394)
T ss_pred ccCcc-eeeEEEecCHHHhh
Confidence 98 68 78899999887643
No 333
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=97.92 E-value=0.0007 Score=75.21 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=68.0
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~ 696 (817)
+.++.-| +.--|.+.+ .++|.++|+ +++++|+||+...|.. .... ......+.++ +|||.+| .| +
T Consensus 143 ~v~~~~P--~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~--~~~~~~~~vi~l~S~SK~~~l~G-l 211 (337)
T PRK03967 143 AVFICSP--NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLI--GLIDEYPNLILLRTFSKAFGLAG-I 211 (337)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchH--HHHhhCCCEEEEecchHhhcchh-h
Confidence 3456667 455566665 467777884 7999999999987731 1111 1112234444 7899999 78 7
Q ss_pred cceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 697 PLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 697 PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
=+|.+++++++++.+... ..+++.+.++.+++.++|+
T Consensus 212 RiG~iv~~~~~i~~~~~~--------~~~~~~~~~~q~~~~~~l~ 248 (337)
T PRK03967 212 RAGYAIANEEIIDALYRI--------KPPFSLNILTMKIVRLALD 248 (337)
T ss_pred hheeeecCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHh
Confidence 899999999998887532 1234557777777777664
No 334
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.92 E-value=0.00028 Score=76.04 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----CCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~----~~~--- 292 (817)
.+|+|||+.. | ..+...+.+++.+..=+|+|+....-....+..+++++++-+.+|+|||.|.. ...
T Consensus 166 ~~D~vIID~P-----P-~~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g 239 (265)
T COG0489 166 EYDYVIIDTP-----P-GTGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEG 239 (265)
T ss_pred CCCEEEEeCC-----C-CchHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCC
Confidence 3999999983 2 24456788888887789999999999999999999999999999999999964 111
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCC
Q 003472 293 NEVPLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-iP~~~~ 315 (817)
..+.+-+.+ + |++| +|..+.
T Consensus 240 ~~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 240 GGEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred chhhHHHHh--c-cccccCCCChh
Confidence 344444444 5 8888 886544
No 335
>PTZ00377 alanine aminotransferase; Provisional
Probab=97.91 E-value=0.0013 Score=76.82 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred cEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccc-ccc-hh-hh-cCCCCc------ee--
Q 003472 619 CIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TA-DL-LGCVPD------IA-- 685 (817)
Q Consensus 619 ~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG-~~~-a~-e~-~gv~PD------iv-- 685 (817)
++. .+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.+ ..+ .. .. .++.++ ++
T Consensus 218 ~~k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~ 294 (481)
T PTZ00377 218 TPRALVVINP--GNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSF 294 (481)
T ss_pred CeeEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEE
Confidence 444 566666 44556655 78899999999999999999999996542112 111 11 10 122222 33
Q ss_pred -eccccc-C-CCCCcceEEEe---chHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHH
Q 003472 686 -CYGKLL-T-GGVIPLAATLA---TNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 686 -tlgK~L-g-gGy~PlsAvl~---s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
+|||++ + .| +=+|.+++ .+++++.+... ...+++.++++.+++.++|+
T Consensus 295 ~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~-------~~~~~~~~~~~Q~a~~~~l~ 348 (481)
T PTZ00377 295 HSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKL-------ASINLCSNVVGQLMTGLMCN 348 (481)
T ss_pred ecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHH-------hheecCCChHHHHHHHHHhC
Confidence 589986 4 47 67787876 78888877431 22334577788887777774
No 336
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=97.87 E-value=0.00084 Score=76.29 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV 662 (817)
+.|++.|++ .+++++..+.++-. ...+|-.+.|.+++++++++|++||+.+.+|=.
T Consensus 170 ~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 170 EGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred HHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhH
Confidence 667778874 34467877777776 344444556899999999999999999999954
No 337
>PRK02769 histidine decarboxylase; Provisional
Probab=97.86 E-value=0.0014 Score=74.16 Aligned_cols=153 Identities=9% Similarity=-0.003 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcC---CcEEEeeeeeccccccccchhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGVETTADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~G---ilLI~DEV~TGfGRtG~~~a~e~~ 678 (817)
+.|++.+++ ...++..|++--. ..+-|.+.| +++|.++|++|| +.+.+|=+|.|+ ..-..-....+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 567777764 1234555555554 677788888 999999999998 699999999763 22100000012
Q ss_pred CC--CCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCchhcH
Q 003472 679 GC--VPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQTNHNI 752 (817)
Q Consensus 679 gv--~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l~~~l 752 (817)
++ ..|.++++ | ++++-.+.|+++++++..+.+...... ......|+.|. ..+.++.-++|+.+..+++ ++.
T Consensus 217 d~~~~vDsis~s~HK-~~~~P~g~G~l~~r~~~~~~~~~~~~y-l~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~-~~~ 293 (380)
T PRK02769 217 SFADGIDSIAISGHK-FIGSPMPCGIVLAKKKYVERISVDVDY-IGSRDQTISGSRNGHTALLLWAAIRSLGSKGL-RQR 293 (380)
T ss_pred CccCCCCEEEECCcc-cCCCCCCcEEEEEehhhhhhcccCccc-cCCCCCCccCCCCcHHHHHHHHHHHHHCHHHH-HHH
Confidence 21 46888764 5 444336889999999877665321110 00112244554 3566777788888866543 444
Q ss_pred HHHHHHHHHHHHHHHH
Q 003472 753 IPERRILRELWDLELI 768 (817)
Q Consensus 753 ~~~~~~lg~~l~~~l~ 768 (817)
.++...+.+++.+++.
T Consensus 294 ~~~~~~la~~l~~~L~ 309 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQ 309 (380)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666665543
No 338
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.86 E-value=0.00014 Score=73.50 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCC--CcEEEEEEccCCCCCHH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~--~~v~gvi~n~~~~~~~~ 295 (817)
+|++||++.+++..+ ...+.. .---+|+|+....-.+..+...++.++..+ .++.++|+|++...+..
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~-~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALA-AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHH-TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH------HHHHHH-hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccc
Confidence 999999998765544 111111 222266777777667888888888888766 56899999999655433
No 339
>PRK11670 antiporter inner membrane protein; Provisional
Probab=97.85 E-value=0.00094 Score=75.32 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~------ 292 (817)
.+|++||-..-|+ +...+.++..+.+. +|+|.....-++..+..+++.+...++++.|+|+|+....
T Consensus 215 ~yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~ 288 (369)
T PRK11670 215 DLDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGH 288 (369)
T ss_pred cCCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccc
Confidence 4999999995543 22233444443333 6788887777788888888888888899999999986211
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 293 --------NEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+.+.+ ++|+++ ||......
T Consensus 289 ~~~if~~~~~~~lae~~--~~~ll~~IP~~~~I~ 320 (369)
T PRK11670 289 HEPIFGTGGAEKLAEKY--HTQLLGQMPLHISLR 320 (369)
T ss_pred hhhhcccchHHHHHHHc--CCcEEEEeCCChHHH
Confidence 134455555 899999 99876643
No 340
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.84 E-value=0.00029 Score=77.10 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCCh---HHHHHHHHHHHHhCC--CcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG---ISGTISAYESLKLRG--YDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~---i~~~~~~~~~l~~~~--~~v~gvi~n~~~~-~~ 293 (817)
++|++||-..|++.++... ..+ +...---||+|+....-+ .+.+..+++.++..+ .++.|+|+|+... ..
T Consensus 122 ~yD~IliD~~~~~~~~g~~-~~~---a~~~Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~ 197 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA-TPL---ARSLAEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGE 197 (296)
T ss_pred cCCEEEEecCCCccccccc-cch---hhhhCCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccH
Confidence 4999999986654332110 111 111112457777766444 466677777777654 6799999999843 33
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 294 ~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
.+.+.+.. ++|+++ ||+.+...
T Consensus 198 ~~~~~~~~--~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 198 AQAFAREV--GIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHHHc--CCCeEEECCCCHHHH
Confidence 34444555 999999 99987765
No 341
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.83 E-value=0.00044 Score=71.56 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhccCcccccccccCCC--CEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHH
Q 003472 195 SKVIETLGKCLRDGLESESESERGKME--ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~--d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (817)
+.+.+.+..+.++ + |+|||.+..+... .....++...+ -||+|+..+.-++..+..+++
T Consensus 134 ~~l~~~l~~l~~~-------------y~~D~IiiD~pp~~~~-----~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~ 194 (207)
T TIGR03018 134 QRMRSLLHELARR-------------YPDRIIIIDTPPLLVF-----SEARALARLVG-QIVLVVEEGRTTQEAVKEALS 194 (207)
T ss_pred HHHHHHHHHHHhh-------------CCCCEEEEECCCCcch-----hHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHH
Confidence 4556666665544 5 9999999553322 22334444444 577888888888999999999
Q ss_pred HHHhCCCcEEEEEEc
Q 003472 273 SLKLRGYDVVAVVFE 287 (817)
Q Consensus 273 ~l~~~~~~v~gvi~n 287 (817)
.++ +.++.|+|+|
T Consensus 195 ~l~--~~~~~G~v~N 207 (207)
T TIGR03018 195 ALE--SCKVLGVVLN 207 (207)
T ss_pred Hhc--CCCeEEEEeC
Confidence 998 6799999998
No 342
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=97.82 E-value=0.0015 Score=75.50 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=48.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEE--eeeeeccccccccchhhhcCCCCceeec-----cccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLGCVPDIACY-----GKLL 691 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~--DEV~TGfGRtG~~~a~e~~gv~PDivtl-----gK~L 691 (817)
++++|++... ...|.+.+ +++|.++|+++|+++|+ |.+..|+ ... .. ....|+++. ||..
T Consensus 204 ~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~~~---~~--~~~~D~~~~s~~k~~~~~ 270 (447)
T PRK00451 204 DTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--LKP---PG--EYGADIVVGEGQPLGIPL 270 (447)
T ss_pred CeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--CCC---cc--cCCCCEEEECCCcCCCCC
Confidence 4667777653 34577765 99999999999999998 6553222 211 11 235688754 4442
Q ss_pred C-CCCCcceEEEechHHHhhh
Q 003472 692 T-GGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 692 g-gGy~PlsAvl~s~~i~d~~ 711 (817)
. +| .-+|.+.+++++.+.+
T Consensus 271 ~~~G-pg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 271 SFGG-PYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCC-CCchHHHhhHHHHhhC
Confidence 2 23 1255567788887764
No 343
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=97.82 E-value=0.0024 Score=72.64 Aligned_cols=84 Identities=14% Similarity=0.198 Sum_probs=56.7
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-ch-hhhcCCCCc---eeecccccC-CC
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TT-ADLLGCVPD---IACYGKLLT-GG 694 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a-~e~~gv~PD---ivtlgK~Lg-gG 694 (817)
+.+|+-| +.--|.+. +.+-+++|.++|++||+++|.||++..|-..+.. .. .+.-+.... +-+|||.+| .|
T Consensus 176 ~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 176 IIYLCSP--NNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 3444455 45556655 7888999999999999999999999766322211 11 111111111 238899997 68
Q ss_pred CCcceEEEechHHH
Q 003472 695 VIPLAATLATNAVF 708 (817)
Q Consensus 695 y~PlsAvl~s~~i~ 708 (817)
+-+|.++++++++
T Consensus 253 -lRiG~~i~~~~l~ 265 (402)
T TIGR03542 253 -VRLGWTVVPKELT 265 (402)
T ss_pred -cceEEEEecHHHh
Confidence 8999999998876
No 344
>PTZ00376 aspartate aminotransferase; Provisional
Probab=97.81 E-value=0.001 Score=75.90 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc---cchhhhc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~---~~a~e~~ 678 (817)
+.+++.+++ ..+.+..-++.-| +.=.|.+. +++-+++|.++|++||+++|.||+...|-.-+. .-....+
T Consensus 164 ~~l~~~~~~----~~~~~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 236 (404)
T PTZ00376 164 DGMLEDLRT----APNGSVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLF 236 (404)
T ss_pred HHHHHHHHh----CCCCCEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHH
Confidence 445556643 1122333333445 45556665 889999999999999999999999977732221 1011111
Q ss_pred -CCCCcee---ecccccC-CCCCcceEE---EechHHHhhhcCCCccceeecccCCCC-CHHHHHHHHHHH
Q 003472 679 -GCVPDIA---CYGKLLT-GGVIPLAAT---LATNAVFDSFVGDSKLKALLHGHSYSA-HALGCAAAAKSI 740 (817)
Q Consensus 679 -gv~PDiv---tlgK~Lg-gGy~PlsAv---l~s~~i~d~~~~~~~~~~~~h~~T~~g-nPla~AAAlA~L 740 (817)
...+.++ +|||.++ .| +=+|.+ ++++++.+.+...- ...+.+++.. ++++..++.++|
T Consensus 237 ~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~q~~~~~~l 303 (404)
T PTZ00376 237 AERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQL---KLIIRPMYSSPPIHGARIADRIL 303 (404)
T ss_pred HhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHH---HHHHhhhcCCCchHHHHHHHHHh
Confidence 1112333 7899999 78 788887 56776555432110 0012234443 556666665555
No 345
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=97.79 E-value=0.0078 Score=68.71 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc-chhhhcCCCCc-ee---ecccccC-CCC
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGV 695 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~-~a~e~~gv~PD-iv---tlgK~Lg-gGy 695 (817)
.+++-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|-..+.. -....+.-.+| ++ +|||.+| .|
T Consensus 180 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pG- 255 (409)
T PRK07590 180 IYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTG- 255 (409)
T ss_pred EEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcC-
Confidence 344566 34446655 7888999999999999999999999766222221 11111111123 22 7999997 78
Q ss_pred CcceEEEechHHHhh
Q 003472 696 IPLAATLATNAVFDS 710 (817)
Q Consensus 696 ~PlsAvl~s~~i~d~ 710 (817)
+=+|.+++.+++++.
T Consensus 256 lRiG~~i~~~~li~~ 270 (409)
T PRK07590 256 TRCAYTVVPKELKGK 270 (409)
T ss_pred ceeEEEEcCHHHhhh
Confidence 789999999998873
No 346
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=97.78 E-value=0.0022 Score=72.80 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=48.7
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccc-cc-cchh-hhcCCCCcee---ecccccCC-CCCcceEEE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTA-DLLGCVPDIA---CYGKLLTG-GVIPLAATL 702 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRt-G~-~~a~-e~~gv~PDiv---tlgK~Lgg-Gy~PlsAvl 702 (817)
+.=-|.+. +.+.+++|.++|++||+++|.||+...|.-. +. .... ...+..+.++ +|||.++- | +=+|.++
T Consensus 182 ~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~ 259 (396)
T PRK09257 182 HNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALS 259 (396)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEE
Confidence 44456655 8999999999999999999999999877421 11 1111 1111223343 78999995 7 6788776
No 347
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.73 E-value=0.0032 Score=69.65 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~ 271 (817)
+..+.+.+.++.+.+. +|+|||-..+++. .....+....+. +|+|+....-++..+...+
T Consensus 189 ~~~~~l~~~l~~l~~~-------------~D~VIID~p~~~~------~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l 248 (322)
T TIGR03815 189 LPPAAVRAVLDAARRG-------------GDLVVVDLPRRLT------PAAETALESADL-VLVVVPADVRAVAAAARVC 248 (322)
T ss_pred CCHHHHHHHHHHHHhc-------------CCEEEEeCCCCCC------HHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHH
Confidence 3445566666555443 9999999976531 123344444443 7788888877777777777
Q ss_pred HHHHhCCCcEEEEEEccCC--CCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 272 ESLKLRGYDVVAVVFEDHG--LVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 272 ~~l~~~~~~v~gvi~n~~~--~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
+.++..+.++ .+|+|+.. ....+.+++.+ +.|+++ ||+.+..
T Consensus 249 ~~l~~~~~~~-~lVv~~~~~~~~~~~~i~~~l--g~~v~~~Ip~d~~v 293 (322)
T TIGR03815 249 PELGRRNPDL-RLVVRGPAPAGLDPEEIAESL--GLPLLGEVRDQRGL 293 (322)
T ss_pred HHHhhhCCCe-EEEEeCCCCCCCCHHHHHHHh--CCCceeeCCCChhH
Confidence 7777665543 56778752 33567788888 899999 9887653
No 348
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=97.71 E-value=0.00051 Score=76.78 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCcee---ecccccC-CCCCc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDiv---tlgK~Lg-gGy~P 697 (817)
.+|.-| +.--|.+. +.+.+++|.+.|+ ++++|+||++.-|.. .. ...+.....|.++ +|+|.+| .| +=
T Consensus 151 i~i~nP--~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~-~~-s~~~~~~~~~~~iv~~S~SK~~~l~G-lR 222 (354)
T PRK04635 151 VFICNP--NNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCP-EY-SVADLLASYPNLVVLRTLSKAFALAG-AR 222 (354)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhcc-Cc-chHHHHhhCCCEEEEechHHHhhhhH-HH
Confidence 345555 55567766 4555666666655 499999999976631 11 1111112224443 8999987 56 56
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTV 777 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V 777 (817)
+|.+++++++.+.+... ...|+.+....++|.++|+ +.+ .+.+.+..+.+.+ .++.+.+.+++++.+
T Consensus 223 lG~~i~~~~~~~~l~~~--------~~~~~~~~~~~~~a~~~l~---~~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~~~ 289 (354)
T PRK04635 223 CGFTLANEELIEILMRV--------IAPYPVPLPVSEIATQALS---EAG-LARMKFQVLDLNA-QGARLQAALSMYGGA 289 (354)
T ss_pred HhhhhCCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHh---ccc-HHHHHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence 77789999998877421 1234445555555555553 321 1223333333322 123344555555532
Q ss_pred ceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 778 QRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 778 ~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
.-....|.++-+++.+ ...+.+.+.++||.
T Consensus 290 ~~~~~~g~f~~~~~~~---------~~~~~~~l~~~gv~ 319 (354)
T PRK04635 290 KVLEGNGNYVLAKFDD---------VDAVFKALWDAGIV 319 (354)
T ss_pred eECCCCCcEEEEECCC---------HHHHHHHHHHCCEE
Confidence 2223346666666542 23466677788873
No 349
>PLN02368 alanine transaminase
Probab=97.69 E-value=0.005 Score=70.46 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=90.4
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc--cch-hhhc-CCC------Ccee---ec
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-ADLL-GCV------PDIA---CY 687 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--~~a-~e~~-gv~------PDiv---tl 687 (817)
+.+++-| +.=-|.+. +.+-+++|.++|++||+++|.||+...+--.|. ... .+.. ++. +.++ +|
T Consensus 213 ~l~l~nP--~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 213 AMVIINP--GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred EEEEECC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 3567778 34456655 799999999999999999999999976622231 211 1111 121 2344 67
Q ss_pred ccccC--CCCCcceEEE---echHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc--CcC---chhcHHHHHH
Q 003472 688 GKLLT--GGVIPLAATL---ATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK--DPQ---TNHNIIPERR 757 (817)
Q Consensus 688 gK~Lg--gGy~PlsAvl---~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~--~~~---l~~~l~~~~~ 757 (817)
||++. -| +=+|.++ +.+++++.+..- ...+++.+.++-.++.++|+--+ ++. +.+.+.+...
T Consensus 290 SK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~-------~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PLN02368 290 SKGYWGECG-QRGGYFEMTNIPPKTVEEIYKV-------ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILE 361 (407)
T ss_pred CcccccCCc-cceEEEEEeCCCHHHHHHHHHH-------hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHH
Confidence 99984 57 6788887 477888877431 22356667778777777763211 000 1111112222
Q ss_pred HHHHHHHHHHHHHHHcCCCcceEEeeeeEEEE
Q 003472 758 ILRELWDLELIQQISSHRTVQRVVALGTLCAI 789 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gI 789 (817)
.+.++ ++.+.+.+++.|.+..+.-.|.|..+
T Consensus 362 ~~~~r-r~~~~~~L~~~~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 362 SLRRR-ARMMTDGFNSCKNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHH-HHHHHHHHhCCCCeEeCCCCeeeEec
Confidence 22222 12244555666655555566666553
No 350
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.0051 Score=69.11 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 003472 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (817)
Q Consensus 419 P~V~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~ 498 (817)
.+..+++.+.++...... -+...++++.+++++|. .++..++||+.|.+.|++.. - -|
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G~---k~ava~~sgT~AL~laL~al-~-----ig-------- 72 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLGV---KYAVAVSSGTAALHLALLAL-A-----IG-------- 72 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhc-C-----CC--------
Confidence 345556666666543322 46778999999999984 68999999999999999976 1 11
Q ss_pred CccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccc
Q 003472 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (817)
Q Consensus 499 ~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~ 578 (817)
....||.-.-+|=.+. .++...|. .|++ .|- .|+.
T Consensus 73 ------~GDeVI~ps~TfvATa-n~i~~~Ga--------~PVF------vDi-------------d~~T----------- 107 (374)
T COG0399 73 ------PGDEVIVPSFTFVATA-NAVLLVGA--------KPVF------VDI-------------DPDT----------- 107 (374)
T ss_pred ------CCCEEEecCCchHHHH-HHHHHcCC--------eEEE------Eec-------------CCcc-----------
Confidence 1125666555554321 22222221 1111 110 0111
Q ss_pred cccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE
Q 003472 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (817)
Q Consensus 579 ~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI 658 (817)
|| +| .+.||+.|.. ++.|||.==+ .|.... ++.++++|++||+++|
T Consensus 108 -~n-id----------------~~~ie~aIt~--------~tKAIipVhl----~G~~~d----m~~i~~la~~~~l~vI 153 (374)
T COG0399 108 -LN-ID----------------PDLIEAAITP--------RTKAIIPVHL----AGQPCD----MDAIMALAKRHGLPVI 153 (374)
T ss_pred -cC-CC----------------HHHHHHHccc--------CCeEEEEehh----ccCCCC----HHHHHHHHHHcCCeEE
Confidence 11 11 2667777752 2555553222 244444 8999999999999999
Q ss_pred EeeeeeccccccccchhhhcCCCCceeec----ccccCCCCCcceEEEec-hHHHhhhc---CCCc-------cceeecc
Q 003472 659 FDEVFTGFWRLGVETTADLLGCVPDIACY----GKLLTGGVIPLAATLAT-NAVFDSFV---GDSK-------LKALLHG 723 (817)
Q Consensus 659 ~DEV~TGfGRtG~~~a~e~~gv~PDivtl----gK~LggGy~PlsAvl~s-~~i~d~~~---~~~~-------~~~~~h~ 723 (817)
-|=.| ++|-+=+. ..-|---|+.+| .|-||-| =-|+++++ +++++... .... ......|
T Consensus 154 EDaAq-a~Ga~y~g---k~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 154 EDAAQ-AHGATYKG---KKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred EEcch-hccCeecC---cccccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 99999 45443221 112222244443 2555532 11245544 45555432 2211 1122346
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 724 HSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 724 ~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+.|--+-+.+|.+++-|+.+++ +.++-+.+.+.+.+
T Consensus 228 ~N~rm~~iqAAigl~QL~~l~~------~~~~R~~~a~~Y~~ 263 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERLDE------INERRREIAQIYAE 263 (374)
T ss_pred cccCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 6777789999999999999854 34444444444433
No 351
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.017 Score=66.04 Aligned_cols=292 Identities=11% Similarity=0.087 Sum_probs=165.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhccccCC-CCC-----CChHHHHHHHHHHhhcCCCCcceEEEeCChHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~~~~~-~~~-----~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA 473 (817)
-|+|..+ .+.. +..|.+|+.+...++.-... ... .+....+.-+.++++++....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~~-p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQK-PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------cccC-CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5777544 3456 88999999988765432211 111 123344555566666664323579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcc
Q 003472 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (817)
Q Consensus 474 ~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (817)
.........+.. + ++ ..||..+.-+|....--..+... .|.-
T Consensus 97 ln~va~~l~~~~--~---------------~g-deIv~s~~EH~sn~~pw~~~~~~--------------~Ga~------ 138 (405)
T COG0520 97 LNLVARGLGRSL--K---------------PG-DEIVVSDLEHHSNIVPWQELAKR--------------TGAK------ 138 (405)
T ss_pred HHHHHHHhhhhh--c---------------CC-CEEEEccCcchhhHHHHHHHHHh--------------cCcE------
Confidence 877766551111 1 12 57888888888754332222210 0100
Q ss_pred cccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 003472 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (817)
Q Consensus 554 ~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~g 633 (817)
+..++..+. .. + ..+.++..+ .++...|.+--+ +..-
T Consensus 139 -----v~~i~~~~~-------------g~----~------------~~~~~~~~i--------~~~Tklvais~v-Sn~t 175 (405)
T COG0520 139 -----VRVIPLDDD-------------GL----L------------DLDALEKLI--------TPKTKLVALSHV-SNVT 175 (405)
T ss_pred -----EEEEecCCC-------------CC----c------------CHHHHHHhc--------CCCceEEEEECc-cccc
Confidence 011111000 00 0 013444433 345667888887 7778
Q ss_pred CcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhh
Q 003472 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 634 G~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~ 711 (817)
|.+.| +++|.++|+++|+++++|=+|+ .|- . -.+-..+..|+++++ |.|.|= .-+|++.+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-~---~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-L---PIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-cCc-c---CCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 99988 9999999999999999999994 311 1 112223468998775 767764 4478999999999876
Q ss_pred cC---CCcc--ceee-cccCCC--------C--CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCC
Q 003472 712 VG---DSKL--KALL-HGHSYS--------A--HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHR 775 (817)
Q Consensus 712 ~~---~~~~--~~~~-h~~T~~--------g--nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p 775 (817)
.. +... .... ...|+. | |..+.....++++++++-+ .+++.+....+.+ .+.+.+++.|
T Consensus 246 ~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig-~~~i~~~e~~L~~----~~~~~L~~~~ 320 (405)
T COG0520 246 EPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIG-MEAIEAHERELTE----YLLEGLSELP 320 (405)
T ss_pred CCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHH----HHHHHHhcCC
Confidence 32 1000 0000 112221 2 3444444567888887643 3455555555555 4455566666
Q ss_pred Ccce---E-EeeeeEEEEEEecC
Q 003472 776 TVQR---V-VALGTLCAIELQAA 794 (817)
Q Consensus 776 ~V~~---V-rG~Glm~gIel~~~ 794 (817)
.+.- - ..++.++.+.+..-
T Consensus 321 ~v~i~g~~~~~r~~~vsF~v~~~ 343 (405)
T COG0520 321 GVEIYGPPDADRGGIVSFNVKGI 343 (405)
T ss_pred CeEEecCCcccCceEEEEEeCCC
Confidence 4321 1 23667777777553
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.0047 Score=71.05 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=36.3
Q ss_pred ccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.++.++.....++++|. +|+||||+++.|++.|. ++|++|...-
T Consensus 82 l~~~~~~~~~~~~p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 82 LGEETEPLVLPLKPQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred hCCCccccccCCCCeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 3333344444445568889997 99999999999999994 6788888764
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.0016 Score=67.84 Aligned_cols=94 Identities=23% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMS 299 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~ 299 (817)
.+|+|||.+--|+--=...-.-.+|+ +|.|++...-++--+--..++...-|++=+++|+|++.+. ...+..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~~~vD~-------vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~-e~~~~~ 204 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTIEGVDL-------VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE-EELLRE 204 (255)
T ss_pred cCcEEEEecccchhhhccccccCCCE-------EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch-hHHHHh
Confidence 48999999854432111011112222 6788888776666666666666677888899999999665 333343
Q ss_pred hhcC-CCcEEe-cCCCCCCCcchh
Q 003472 300 YLRN-RVPVLV-LPPLPQDSSNDL 321 (817)
Q Consensus 300 ~~~~-~~pvlg-iP~~~~~~~~~~ 321 (817)
.... +.+|+| ||+.+.+..-++
T Consensus 205 ~~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 205 LAEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred hhhccCCeEEEEccCCHHHHhccc
Confidence 3333 899999 999988765443
No 354
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.64 E-value=0.0024 Score=64.16 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--CHHH
Q 003472 219 KMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--NEVP 296 (817)
Q Consensus 219 ~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--~~~~ 296 (817)
+.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++... ..+.
T Consensus 91 ~~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHH
Confidence 3599999999887532 1222222222 367888888888999888999998877774 8999998432 2344
Q ss_pred HHHhhcC-CCcEEe-cC
Q 003472 297 LMSYLRN-RVPVLV-LP 311 (817)
Q Consensus 297 l~~~~~~-~~pvlg-iP 311 (817)
++++++. ++|++| ||
T Consensus 163 ~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 163 IEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHHcCCCeEEeCC
Confidence 5555554 999999 87
No 355
>PRK10867 signal recognition particle protein; Provisional
Probab=97.63 E-value=0.003 Score=72.46 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchh---hHhhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----
Q 003472 220 MEILCIVETAGGVASPGPSGSLQC---DLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL---- 291 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~---~la~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~---- 291 (817)
.+|+|||.+||-... ++.... .+.+.. ...++||++...| ..++...+.+.. .+.+.|+|+|+...
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcccc
Confidence 489999999995432 111222 222222 2357999997543 344444444443 47789999999842
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 003472 292 VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgi 310 (817)
...-.+...+ ++|+..+
T Consensus 257 G~alsi~~~~--~~PI~fi 273 (433)
T PRK10867 257 GAALSIRAVT--GKPIKFI 273 (433)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455666 8998663
No 356
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=97.63 E-value=0.0082 Score=68.57 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=96.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCce---eecccccCCCCCc
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI---ACYGKLLTGGVIP 697 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDi---vtlgK~LggGy~P 697 (817)
+.++.-| +.=-|.+. +.+-+++|.++|++|++++|.||+..-+ .....+..-.-...+.+ -+|||....| +-
T Consensus 182 ~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~~~~~~vI~~~SfSK~~~pG-lR 256 (416)
T PRK09440 182 AICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATPLWNPNIILCMSLSKLGLPG-VR 256 (416)
T ss_pred EEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCccccCCeEEEecccccCCCc-ce
Confidence 4555566 45557766 7889999999999999999999998311 11100000000012233 3889975568 78
Q ss_pred ceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHH-HHHHHHHHHHHHHHHHHcC-C
Q 003472 698 LAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPE-RRILRELWDLELIQQISSH-R 775 (817)
Q Consensus 698 lsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~-~~~lg~~l~~~l~~~l~~~-p 775 (817)
+|.+++++++++.+... ......+.+.++..++.+.| ++.++...+.+. .....+.. +.+.+.+.++ +
T Consensus 257 iG~~i~~~~l~~~~~~~------~~~~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~r~-~~~~~~L~~~l~ 326 (416)
T PRK09440 257 CGIVIADEEIIEALSNM------NGIISLAPGRLGPAIAAEMI---ESGDLLRLSETVIRPFYRQKV-QLAIALLRRYLP 326 (416)
T ss_pred EEEEeCCHHHHHHHHHH------HHHhccCCCcHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 99999999998887431 11123445667666665555 333332222221 11111111 1223333322 2
Q ss_pred C--cceEEee-eeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 776 T--VQRVVAL-GTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 776 ~--V~~VrG~-Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
. +.-++.. |.++-+++.+.. .....+...+.++||.
T Consensus 327 ~~~~~~~~p~gg~fiw~~~~~~~-----~~~~~~~~~l~~~gV~ 365 (416)
T PRK09440 327 DEPCLIHKPEGAIFLWLWFKDLP-----ITTEELYQRLKARGVL 365 (416)
T ss_pred cCCeEEecCCCceEEEEECCCCC-----CCHHHHHHHHHHCCEE
Confidence 1 2112343 677777775421 1234566777788863
No 357
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.62 E-value=0.00088 Score=71.71 Aligned_cols=64 Identities=27% Similarity=0.129 Sum_probs=48.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCC---HHH-----------HHHhhcC--CCcEEecCCCCC
Q 003472 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN---EVP-----------LMSYLRN--RVPVLVLPPLPQ 315 (817)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~---~~~-----------l~~~~~~--~~pvlgiP~~~~ 315 (817)
-+++|+....-++..+..+++.++..|+++.|+|+|++.... ..+ |++.-.. +.|++.+|+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~ 241 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPE 241 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCC
Confidence 489999999999999999999999999999999999983221 111 1111111 688888998765
No 358
>PLN03032 serine decarboxylase; Provisional
Probab=97.59 E-value=0.0055 Score=69.25 Aligned_cols=234 Identities=7% Similarity=-0.048 Sum_probs=126.8
Q ss_pred ChHHHHHHHHHHhhcCCCCcce--EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCC
Q 003472 442 YEPALECAELLLQGVGKGWASR--AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~--v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~ 519 (817)
.+...+.-+.++++++.+ -+. .+|+++|+|||..|+..| |.+.. ..+|.....-|-+
T Consensus 65 ~~~e~~v~~~ia~llg~~-~~~~~G~fTsGGTEaNl~al~~a-r~~~~-------------------~~~vi~s~~~H~S 123 (374)
T PLN03032 65 RQFEVGVLDWFARLWELE-KDEYWGYITTCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYS 123 (374)
T ss_pred HHHHHHHHHHHHHHhCCC-CccCCEEEeCchHHHHHHHHHHH-HHhCC-------------------CcEEEeCCCceeH
Confidence 344556667777777642 133 489999999999999999 54321 1356666666765
Q ss_pred ccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
..-++...+.. +..+|..... .+ |
T Consensus 124 v~kaa~~lg~~----------------------------~~~V~~d~~g-------------~i--------d------- 147 (374)
T PLN03032 124 VFKAARMYRME----------------------------AVKVPTLPSG-------------EI--------D------- 147 (374)
T ss_pred HHHHHHHcCCC----------------------------CeEeeeCCCC-------------cC--------c-------
Confidence 54443333211 0111111000 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC-----cEEEeeeeeccccccccch
Q 003472 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi-----lLI~DEV~TGfGRtG~~~a 674 (817)
.+.|++.|++ ...+..+|++--. ..+-|.+-| +++|.++|++||+ .|-+|=+|.|+ .. .+.-
T Consensus 148 -~~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p~~~ 214 (374)
T PLN03032 148 -YDDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-PFVS 214 (374)
T ss_pred -HHHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-hccC
Confidence 2567777763 1224445555433 566788877 9999999999975 79999999653 21 1100
Q ss_pred -hhh--cCCCCceeeccc-ccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCC--HHHHHHHHHHHHHhcCcCc
Q 003472 675 -ADL--LGCVPDIACYGK-LLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAH--ALGCAAAAKSIKWFKDPQT 748 (817)
Q Consensus 675 -~e~--~gv~PDivtlgK-~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gn--Pla~AAAlA~L~~l~~~~l 748 (817)
... +....|.++++- .++|.=.++|+++++++..+.+........ ....|..|. ....++.-++|..+-.+++
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~-~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~ 293 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLN-SRDATIMGSRNGHAPLYLWYTLRRKGYRGI 293 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccC-CCCCcccCCCchHHHHHHHHHHHHhCHHHH
Confidence 001 112468776632 344422678899999887766533221000 012344443 2455666677777755444
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 003472 749 NHNIIPERRILRELWDLEL 767 (817)
Q Consensus 749 ~~~l~~~~~~lg~~l~~~l 767 (817)
.+. .+++-.+.+++.+.+
T Consensus 294 ~~~-~~~~~~~a~~l~~~l 311 (374)
T PLN03032 294 KRD-VQHCMRNAHYLKDRL 311 (374)
T ss_pred HHH-HHHHHHHHHHHHHHH
Confidence 333 233333444444433
No 359
>PRK11519 tyrosine kinase; Provisional
Probab=97.58 E-value=0.0011 Score=81.20 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=47.8
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
+|+|||.+. |+..-....-+++..+.. |+|+..+.-....+..+++.+++.+.++.|+|+|++
T Consensus 636 yD~ViiDtp-----P~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 636 YDLVLIDTP-----PILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred CCEEEEeCC-----CcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999994 322112234456666654 677777777788888899999999999999999998
No 360
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.58 E-value=0.0052 Score=64.80 Aligned_cols=201 Identities=15% Similarity=0.130 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
.++..++-+.|++++| .+.+-+++..-||-.++|... ..+.+.++.++..|=+|+
T Consensus 60 kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal----------------------~~~gd~vV~D~~aHYtty 114 (382)
T COG1103 60 KPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL----------------------CKEGDWVVVDSLAHYTTY 114 (382)
T ss_pred CCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh----------------------ccCCCEEEEcCcchHHHH
Confidence 5677788888999998 578999999999988777655 234578999999998887
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
-|.-..|-..+- .|. -..|... - ....|.
T Consensus 115 vAAEragl~v~e----------------Vp~---------tg~Pey~------------i--------------~~e~y~ 143 (382)
T COG1103 115 VAAERAGLNVAE----------------VPN---------TGYPEYK------------I--------------TPEGYA 143 (382)
T ss_pred HHHHhcCCeEEe----------------cCC---------CCCCceE------------e--------------cHHHHH
Confidence 665544422111 011 0112111 0 012345
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
+.+++..+ ++++.++ |++.-| .|+-|.++. -+.+.++|++||++|++.=+.| .||.- . ..-.+
T Consensus 144 ~viee~~~-----~~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp---v-s~ke~ 207 (382)
T COG1103 144 EVIEEVKD-----EGGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP---V-SGKEI 207 (382)
T ss_pred HHHHHHHh-----ccCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc---c-ccccc
Confidence 66666665 3445455 555555 588887776 7899999999999999998887 55542 1 22346
Q ss_pred CCceeecc--cccCCCCCcceEEEechHHHhhhcCCC-c----cceeecccCCCCCHHHHHH
Q 003472 681 VPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDS-K----LKALLHGHSYSAHALGCAA 735 (817)
Q Consensus 681 ~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~-~----~~~~~h~~T~~gnPla~AA 735 (817)
.+|+++=| |+++.. .|+|.+.++++..+.....+ + ...-+.|-|--|-|+..-.
T Consensus 208 g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlm 268 (382)
T COG1103 208 GADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLM 268 (382)
T ss_pred CCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHH
Confidence 78988654 788876 69999999999887653322 1 1123456777777765443
No 361
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.58 E-value=0.0015 Score=80.05 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=47.8
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~ 290 (817)
+|+|||.++-.+.+ ..+.+...+---+|+|+..+.-...++..+++.+.+.+.++.|+|+|++.
T Consensus 641 yD~IIIDtPP~~~~------~Da~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 641 YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred CCEEEEeCCCcccc------chHHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcc
Confidence 99999999542222 11223233334578888888888999999999999999999999999983
No 362
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.0015 Score=73.37 Aligned_cols=194 Identities=15% Similarity=0.058 Sum_probs=117.2
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++....|++.++++-+ ...++.++||-.|.-.|+.... +....||.+...|+|..
T Consensus 75 ~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------------------~~g~~iV~~~~~Y~gT~ 130 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------------------PAGDHIVATGDVYGGTL 130 (409)
T ss_pred CCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------------------CCCCcEEEeCCCcccHH
Confidence 46677789999999877 4679999999999999988872 22347899999999843
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.. +.-... ..|.. ..|-|.+ +
T Consensus 131 ~~-l~~~~~-------------~~gie------------------------------~~~vd~~----------~----- 151 (409)
T KOG0053|consen 131 RI-LRKFLP-------------KFGGE------------------------------GDFVDVD----------D----- 151 (409)
T ss_pred HH-HHHHHH-------------HhCce------------------------------eeeechh----------h-----
Confidence 21 111100 00000 0122221 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.++..++ .++-+|.+|.. ..--.-++. +++|+++|+++|+++|+|+...+. .-++-+.+
T Consensus 152 ~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~l 212 (409)
T KOG0053|consen 152 LKKILKAIK--------ENTKAVFLESP-SNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPL 212 (409)
T ss_pred HHHHHHhhc--------cCceEEEEECC-CCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhc
Confidence 134454443 37899999986 222233333 899999999999999999998433 22333444
Q ss_pred CCceee--cccccCCCC-CcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHH
Q 003472 681 VPDIAC--YGKLLTGGV-IPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKW 742 (817)
Q Consensus 681 ~PDivt--lgK~LggGy-~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~ 742 (817)
-.||++ .-|=++|.= +-.|+++.+ ++....+... ...--+.-+|..|--.+.-|+.
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~------~~~lg~~~~p~~~~ll~Rglkt 272 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFL------QEDLGWCEDPFDLFLLSRGLKT 272 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHH------HHHhcCCCCHHHHHHHhcCcch
Confidence 479995 568898732 233445553 6666555321 1112244577777655444433
No 363
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.55 E-value=0.00036 Score=73.33 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCCcHHHHHH
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFT 95 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~-~~~d~~~~~~ 95 (817)
|+.+.|+|. +|+||||++..|++.|+ ++|++|+++|+..++.. +..|+..+.+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~~~~Dt~r~~~ 54 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDKPDTDTYRFKK 54 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCCCCchHHHHHH
Confidence 678999999 89999999999999994 78999999999776543 2345444333
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.55 E-value=0.0042 Score=71.28 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhH---hhhC-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL---- 291 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~l---a~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~---- 291 (817)
.+|+|||.++|-.. . ++....++ .+.+ ...++||.+...| ..++...+.+. ..+.+.|+|+|+...
T Consensus 182 ~~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 48999999999533 1 11122222 2222 2358999997644 33333333333 346789999999842
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 003472 292 VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgi 310 (817)
.....+...+ ++|+.-+
T Consensus 256 G~~lsi~~~~--~~PI~fi 272 (428)
T TIGR00959 256 GAALSVRSVT--GKPIKFI 272 (428)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455566 8898664
No 365
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.51 E-value=0.0015 Score=67.85 Aligned_cols=90 Identities=9% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHH---HHHHHHHhC-CCcEEEEEEccCCCCC-H
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI---SAYESLKLR-GYDVVAVVFEDHGLVN-E 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~---~~~~~l~~~-~~~v~gvi~n~~~~~~-~ 294 (817)
+||+|||-+.|++.... ....++...--.+|+|+....-++..+- ..++.++.. +.++.|+|+|++.... .
T Consensus 116 ~yD~ilID~~g~~~~~~----~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGG----FAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRET 191 (212)
T ss_pred CCCEEEEecCCCceecc----cccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHH
Confidence 49999999965432111 0011111122257788887765654444 444444332 6678999999995432 2
Q ss_pred HHHHHhhcC-CCcEEe-cCCC
Q 003472 295 VPLMSYLRN-RVPVLV-LPPL 313 (817)
Q Consensus 295 ~~l~~~~~~-~~pvlg-iP~~ 313 (817)
+.+++..+. +.|+++ ||+.
T Consensus 192 ~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 192 ELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 222332222 899999 9963
No 366
>PLN02231 alanine transaminase
Probab=97.49 E-value=0.011 Score=70.18 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccc-cccc-hhhh-
Q 003472 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADL- 677 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRt-G~~~-a~e~- 677 (817)
+.|++.+++.. ....++. .+|+-| +.=.|.+. +.+-+++|.++|++||+++|.|||..-+--. |+.+ .+..
T Consensus 256 ~~Le~~l~~~~--~~~~~~k~ivl~nP--~NPTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~ 330 (534)
T PLN02231 256 SELKKQLEDAR--SKGITVRALVVINP--GNPTGQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKV 330 (534)
T ss_pred HHHHHHHHHHh--hcCCCeEEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHH
Confidence 45555554310 1112344 466666 34456655 8999999999999999999999999765221 2221 1111
Q ss_pred ---cCC---CCcee---ecccccCC--CCCcceEEEe---chHHHhhhc
Q 003472 678 ---LGC---VPDIA---CYGKLLTG--GVIPLAATLA---TNAVFDSFV 712 (817)
Q Consensus 678 ---~gv---~PDiv---tlgK~Lgg--Gy~PlsAvl~---s~~i~d~~~ 712 (817)
.|. ...++ .+||++.| | +-+|.+++ .+++.+.+.
T Consensus 331 ~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~ 378 (534)
T PLN02231 331 ARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIY 378 (534)
T ss_pred HhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHH
Confidence 121 11244 67998753 6 67777775 678888774
No 367
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.00094 Score=68.60 Aligned_cols=199 Identities=14% Similarity=0.189 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhCCCCccccCCCcccccccch
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (817)
.+.+.||+--.||||||.|+.|.-+|. ++|+||+..-- .-|.+ |.---+=++|++
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD~-DiGLR-------------------NLDlimGlE~Ri 56 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLIDF-DIGLR-------------------NLDLIMGLENRI 56 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEec-CcCch-------------------hhhhhhccccee
Confidence 367899999999999999999999995 88999987652 11110 000000011111
Q ss_pred hhhhHHHhhhhccCCCCCCCCcccCcccccccccccccccCCCCCcccccceeeeeeeccccChHHHHhHhcCCCCChHH
Q 003472 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (817)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (817)
... ....+ ...-+++...++ .-.+.|++.++. ++.+. ...++.++
T Consensus 57 VYd-~vdVi----~g~~~l~QALIk-----------------------DKr~~nL~lLPA------sQtrd-Kdalt~E~ 101 (272)
T COG2894 57 VYD-LVDVI----EGEATLNQALIK-----------------------DKRLENLFLLPA------SQTRD-KDALTPEG 101 (272)
T ss_pred eee-ehhhh----cCccchhhHhhc-----------------------cccCCceEeccc------ccccC-cccCCHHH
Confidence 100 00000 000000000000 012356776632 22222 33567888
Q ss_pred HHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh
Q 003472 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276 (817)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~ 276 (817)
+...++++.+. .+|++||...-|+-.+ +..|-..--..|+|+.+...++..+---+.+|.+
T Consensus 102 v~~vv~eL~~~------------~fDyIi~DsPAGIE~G-------~~~A~~~Ad~AiVVtnPEvSsVRDsDRiiGlLes 162 (272)
T COG2894 102 VKKVVNELKAM------------DFDYIIIDSPAGIEQG-------FKNAVYFADEAIVVTNPEVSSVRDSDRIIGLLES 162 (272)
T ss_pred HHHHHHHHHhc------------CCCEEEecCcchHHHH-------HHhhhhccceEEEEcCCCccccccchhheeehhc
Confidence 88877777642 3999999886554333 3334444445788888877766555444444543
Q ss_pred CC------Cc-EEEEEEccC--------CCCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 277 RG------YD-VVAVVFEDH--------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 277 ~~------~~-v~gvi~n~~--------~~~~~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+ -. -.-+|+|+. ..-..+.+.+.+ .+|++| ||...+.
T Consensus 163 k~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL--~i~liGiiPed~~V 216 (272)
T COG2894 163 KSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEIL--SIPLIGVIPEDQDV 216 (272)
T ss_pred ccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHh--CCceEEeecCchhh
Confidence 33 11 257899997 223466778888 999999 9987664
No 368
>PRK08637 hypothetical protein; Provisional
Probab=97.43 E-value=0.033 Score=63.10 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=96.7
Q ss_pred EEEEccccccCCCcccCCHHHHHHHHHHHhh-----cCCcEEEeeeeeccccccccc--hh-hhcCCCCce--e---ecc
Q 003472 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET--TA-DLLGCVPDI--A---CYG 688 (817)
Q Consensus 622 AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~-----~GilLI~DEV~TGfGRtG~~~--a~-e~~gv~PDi--v---tlg 688 (817)
-++.-| +.=-|.+. +++-+++|.++|++ |++++|.||+...|--.+... .. ...+..+.+ + .++
T Consensus 150 ~~~~~P--~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~S 226 (388)
T PRK08637 150 VILNFP--NNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGAT 226 (388)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEecccc
Confidence 344456 45556554 88899999998875 999999999998773333311 11 112333443 2 589
Q ss_pred cccC-CCCCcceEEEec------hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHH
Q 003472 689 KLLT-GGVIPLAATLAT------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRE 761 (817)
Q Consensus 689 K~Lg-gGy~PlsAvl~s------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~ 761 (817)
|.++ .| +-+|.+++. +++.+.+..... .......++.+.++.+++.+.| +++.+...+.+....+.+
T Consensus 227 K~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~s~~~q~a~~~~l---~~~~~~~~~~~~~~~~~~ 300 (388)
T PRK08637 227 KEEFVWG-FRVGFITFGTKAGSSQTVKEALEKKVK--GLIRSNISNGPHPSQSAVLRAL---NSPEFDKEKQEKFQILKE 300 (388)
T ss_pred ccCCCcc-cceEEEEEccccCCcHHHHHHHHHHHH--HHhhcccCCCCcHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 9865 47 788888753 677766632100 0001122356778888776665 343333333333333332
Q ss_pred HHHHHHHHHHHcCC---CcceEE-eeeeEEEEEEecCCCCCCcchHHHHHHHHH-HcCCC
Q 003472 762 LWDLELIQQISSHR---TVQRVV-ALGTLCAIELQAAGCNAGYCLIELFLYNFL-TTGMH 816 (817)
Q Consensus 762 ~l~~~l~~~l~~~p---~V~~Vr-G~Glm~gIel~~~~~~~~~~~~~~~~~~~l-~~Gv~ 816 (817)
... .+.+.+++++ .+.-.. .-|+++-+.+.. .....+...++ ++||.
T Consensus 301 r~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~ 352 (388)
T PRK08637 301 RYE-KTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIG 352 (388)
T ss_pred HHH-HHHHHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceE
Confidence 211 2334444442 222222 347777777742 13456777776 45763
No 369
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.42 E-value=0.0024 Score=68.58 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~n~~~~~~~~ 295 (817)
++|+|||-+.|++..... .+ .+..- --||+|+....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~---~~--~l~~A-D~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGF---AA--PLQYA-DYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCcc---cc--hhhhC-cEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 499999999654432210 00 01111 1377777777666666555555544 3456788999999642 22
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
.+++..+. +.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 33333322 889999 88775544
No 370
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=97.42 E-value=0.012 Score=69.44 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=78.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCceeecc--cccCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACYG--KLLTGGV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtlg--K~LggGy 695 (817)
++.+|+.-.- ..+-|.+.| +++|.++|+++|+.|.+|=++.|....-.-+-...-|+ ..|.+|++ |-+.+-
T Consensus 265 ~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P- 338 (522)
T TIGR03799 265 KPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP- 338 (522)
T ss_pred CcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-
Confidence 4555655332 345678877 99999999999999999999965421111111112355 67988774 666655
Q ss_pred CcceEEEech-HHHhhhcCCCcc----ce-eecccCCCCC-HHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHH
Q 003472 696 IPLAATLATN-AVFDSFVGDSKL----KA-LLHGHSYSAH-ALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDL 765 (817)
Q Consensus 696 ~PlsAvl~s~-~i~d~~~~~~~~----~~-~~h~~T~~gn-Pla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~ 765 (817)
+.+|++++++ +..+.+...... .. -....|+.+. +.......++|+.+...++ +.+.++.-.+.++|.+
T Consensus 339 ~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~-~~ii~~~~~la~~l~~ 414 (522)
T TIGR03799 339 MGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGY-ELLIDQSIEKAKYFAD 414 (522)
T ss_pred cccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 5778888874 444544321100 00 0001233332 2212235677888765443 4555555566665544
No 371
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=97.40 E-value=0.038 Score=63.79 Aligned_cols=90 Identities=8% Similarity=-0.121 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc------CCcEEEeeeeecccc---cccc
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGVE 672 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~------GilLI~DEV~TGfGR---tG~~ 672 (817)
+.|++.|++ ++..|++--+ ..+-|.+.| +++|.++|+++ |+++.+|=+|.|+-. .++.
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 567777752 2345555544 677888888 99999999999 999999999976421 2321
Q ss_pred -chhhhcCCCCceeecc-cccCCCCCcceEEEechH
Q 003472 673 -TTADLLGCVPDIACYG-KLLTGGVIPLAATLATNA 706 (817)
Q Consensus 673 -~a~e~~gv~PDivtlg-K~LggGy~PlsAvl~s~~ 706 (817)
+-+. ....|.++++ -.++.|-..+|++++++.
T Consensus 244 ~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRDE 277 (431)
T ss_pred hhhcC--CCCceEEEECchhccCCCCCcEEEEEeCh
Confidence 1111 1245777663 233433245678888765
No 372
>PLN02271 serine hydroxymethyltransferase
Probab=97.40 E-value=0.0019 Score=75.46 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=79.7
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceee--cccccCCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~LggGy~ 696 (817)
+...||+...... ...+ +++++++|+++|++|++|-.|+ .|-........-+. ..|++| .-|.|.|=-
T Consensus 298 rPKLII~g~Sayp---r~~D----~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr- 367 (586)
T PLN02271 298 RPKILICGGSSYP---REWD----YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR- 367 (586)
T ss_pred CCeEEEECchhcc---CcCC----HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCCc-CCcEEEeCCcccCCCCC-
Confidence 4567777553111 2223 8899999999999999999996 33332211111111 369884 569986510
Q ss_pred cceEEEechHH--------------------HhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCc---CchhcHH
Q 003472 697 PLAATLATNAV--------------------FDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDP---QTNHNII 753 (817)
Q Consensus 697 PlsAvl~s~~i--------------------~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~---~l~~~l~ 753 (817)
-|.++++++. .+.+... .++.+.+++.... .|+-..+++.+..+ ++.+++.
T Consensus 368 -GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~a--VfPglqgGphn~~---IAalAvalkea~~~efk~Ya~QVv 441 (586)
T PLN02271 368 -GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFA--VFPSLQGGPHNNH---IAALAIALKQVATPEYKAYMQQVK 441 (586)
T ss_pred -ceEEEecccccccccCCccccccccccHHHHHHhhcc--cCCccccChhHHH---HHHHHHHHHHHhChHHHHHHHHHH
Confidence 0335555532 2222111 1222222222222 33333345544443 3668889
Q ss_pred HHHHHHHHHHHHHHHHHHH----cCCCcceEEeee
Q 003472 754 PERRILRELWDLELIQQIS----SHRTVQRVVALG 784 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~----~~p~V~~VrG~G 784 (817)
+|++.|.+.|.++..+++. .|=.+.|+|..|
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g 476 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG 476 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC
Confidence 9999999877765555442 122345666554
No 373
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=97.34 E-value=0.0037 Score=67.13 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
++.+++.|.+ .++.+|.+-=. -++-|+.- ..++...++|++|+++|++|-|-+ + .|.-|.++.+||
T Consensus 131 le~i~~~lsq-------h~p~~vfv~hg-dsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV 196 (385)
T KOG2862|consen 131 LEEITEKLSQ-------HKPKAVFVTHG-DSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV 196 (385)
T ss_pred HHHHHHHHHh-------cCCceEEEEec-Cccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc
Confidence 3667777774 23444444332 34456644 357788899999999999999986 3 466889999987
Q ss_pred CCceeecccccCC--CCCcceEEEechHHHhhhcCCC-ccceeecccCCCCC---------------HHH-HHHHHHHHH
Q 003472 681 VPDIACYGKLLTG--GVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAH---------------ALG-CAAAAKSIK 741 (817)
Q Consensus 681 ~PDivtlgK~Lgg--Gy~PlsAvl~s~~i~d~~~~~~-~~~~~~h~~T~~gn---------------Pla-~AAAlA~L~ 741 (817)
+-=+.--=|+||+ |. +-+..++...+.+.... +...+++..-.-+| |+. .-.-.++|+
T Consensus 197 DvaytgSQKaL~aP~GL---siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~ 273 (385)
T KOG2862|consen 197 DVAYTGSQKALGAPAGL---SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALA 273 (385)
T ss_pred cEEEecchhhcCCCCCc---ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHH
Confidence 5444455689986 74 34777888888776532 11222222212222 222 234557888
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHH
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQ 769 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~ 769 (817)
.|-++++ ++.+++-+++++.++..+.+
T Consensus 274 ~I~eeGL-~~~~~rH~e~s~~l~~~l~~ 300 (385)
T KOG2862|consen 274 LIAEEGL-ENSWRRHREMSKWLKLSLEA 300 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 8877665 44455556666666655544
No 374
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.004 Score=64.59 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCEEEEeC-----CCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH---HHHHHH-hCCCcEEEEEEccCCC
Q 003472 221 EILCIVET-----AGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS---AYESLK-LRGYDVVAVVFEDHGL 291 (817)
Q Consensus 221 ~d~vivEG-----agg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~---~~~~l~-~~~~~v~gvi~n~~~~ 291 (817)
-|+|+-.= .||++.|+.+++.+ .|.+|+++....+-++-. ++.-+. ..+.++-|+|.|.-.-
T Consensus 118 ~DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 118 LDVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred CCEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 36655432 37888898765543 577888888766544443 333333 3557899999998643
Q ss_pred CCH-HHHHHhhcC-CCcEEe-cCCCCCCC-----cchhhhhhccc
Q 003472 292 VNE-VPLMSYLRN-RVPVLV-LPPLPQDS-----SNDLMEWFDES 328 (817)
Q Consensus 292 ~~~-~~l~~~~~~-~~pvlg-iP~~~~~~-----~~~~~~~l~~~ 328 (817)
... +.++++.+. +-|+++ ||..+... ..++.|+.-++
T Consensus 189 ~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~~P~s 233 (278)
T COG1348 189 DRERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEYAPDS 233 (278)
T ss_pred ccHHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhhCcch
Confidence 333 334444333 999999 99987654 23666666444
No 375
>PLN02880 tyrosine decarboxylase
Probab=97.32 E-value=0.014 Score=68.50 Aligned_cols=96 Identities=10% Similarity=-0.061 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.|++.|++.. ..+..+.+|+.--- ...-|.+-| +++|.++|++||+.|-+|=++.|+-..-..+-...-|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 45555554310 12334455555542 455677777 99999999999999999988865433222222223465
Q ss_pred CCceeec--ccccCCCCCcceEEEech
Q 003472 681 VPDIACY--GKLLTGGVIPLAATLATN 705 (817)
Q Consensus 681 ~PDivtl--gK~LggGy~PlsAvl~s~ 705 (817)
..|-+++ -|-+..- ++.|+++++.
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~ 322 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKD 322 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeC
Confidence 5787754 6877666 6888888875
No 376
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.30 E-value=0.0029 Score=67.92 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~n~~~~~-~~ 294 (817)
++|+|||-+.|++..+... . ....-+ -+|+|+....-++..+...++.++. .++++.|+|+|++... ..
T Consensus 115 ~yD~ViID~~~~~~~~~~~---~--~l~aAD-~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~~~ 188 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFA---T--PLQYAD-YALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDATDLI 188 (268)
T ss_pred cCCEEEEecCCccccCccc---c--chhhcC-EEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChHHHH
Confidence 4999999997755433211 0 111111 2556666666566665555554442 4577899999998432 22
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 003472 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~ 315 (817)
+.+.+.+ +.|+++ ||....
T Consensus 189 ~~~~~~~--~~~vl~~I~~~~~ 208 (268)
T TIGR01281 189 ERFNERV--GMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHc--CCCEEEEcCCChH
Confidence 2233334 899999 887654
No 377
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.29 E-value=0.0018 Score=73.60 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGse-A~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+.+++.+| .++.+|...||. +|.+++..+ ..+.+.|.++...|-+.
T Consensus 65 ~G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~----------------------~~~gd~VLv~RN~HkSv 119 (417)
T PF01276_consen 65 EGIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMAL----------------------CRPGDKVLVDRNCHKSV 119 (417)
T ss_dssp BTHHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHH----------------------TTTTCEEEEETT--HHH
T ss_pred ccHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHh----------------------cCCCCEEEEcCCcHHHH
Confidence 4566677777777888 578888766654 555555554 12346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.++-++|.. .|-.+ . ....+. ..+++ - +++.
T Consensus 120 ~~alil~ga~Pvyi~p----------------~-~~~~gi-~~~i~--------------~-------------~~~~-- 152 (417)
T PF01276_consen 120 YNALILSGAIPVYIPP----------------E-DNEYGI-IGGIS--------------P-------------DEFN-- 152 (417)
T ss_dssp HHHHHHHTEEEEEEEE----------------E-E-TTS--BEEB---------------G-------------GGGS--
T ss_pred HHHHHHcCCeEEEecC----------------C-ccccCC-ccCCC--------------h-------------hhhh--
Confidence 9999998742 22111 0 000000 00000 0 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhh
Q 003472 600 YSSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~~~~~~iA---AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e 676 (817)
.+.+++.|++. ++.-+ +||+-|-. .|+... ++.|.++|+++|++|++||++.+.-+...+ -..
T Consensus 153 -~~~i~~~l~~~-----p~~k~~~~vvlt~PTY---~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~l-p~~ 218 (417)
T PF01276_consen 153 -EEDIEEALKEH-----PDAKAPRLVVLTSPTY---YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHPL-PRS 218 (417)
T ss_dssp -HHHHHHHHHHC-----TTCHCESEEEEESS-T---TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG-GTT
T ss_pred -HHHHHHHHHhC-----ccccCceEEEEeCCCC---CeEEEC----HHHHHHHhcccCCEEEEEccccccccCCCC-ccc
Confidence 15677778752 33333 78888853 467776 999999999999999999999654444422 223
Q ss_pred hcCCCCc-------eeec--ccccCCCCCcceEEEechHH-H--hhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhc
Q 003472 677 LLGCVPD-------IACY--GKLLTGGVIPLAATLATNAV-F--DSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 677 ~~gv~PD-------ivtl--gK~LggGy~PlsAvl~s~~i-~--d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~ 744 (817)
....-.| ++|- =|.|++ +-.-|.+..+.+- . +.+.. .+..-.|.+-+=+-+|..-.+.++++
T Consensus 219 a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~-----~l~~~~TTSPSY~lmASlD~a~~~m~ 292 (417)
T PF01276_consen 219 ALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNE-----ALSMHQTTSPSYPLMASLDVARAQME 292 (417)
T ss_dssp CSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH-----HHHHHS-SS--HHHHHHHHHHHHHHS
T ss_pred hhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHH-----HHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3445566 7754 466654 2334455555542 2 22211 12233466666666666666667772
Q ss_pred -C--cCchhcHHHHHHHHHH
Q 003472 745 -D--PQTNHNIIPERRILRE 761 (817)
Q Consensus 745 -~--~~l~~~l~~~~~~lg~ 761 (817)
+ ..+.++..+++..+++
T Consensus 293 ~~~G~~l~~~~i~~a~~~R~ 312 (417)
T PF01276_consen 293 EEEGRELLEEAIELAEEFRK 312 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 2 2344455555544444
No 378
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.29 E-value=0.0021 Score=70.14 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCC-CCCH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHG-LVNE 294 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~n~~~-~~~~ 294 (817)
++|+|||-+.|++..+.- . .....-+ -||+|+....-++..+-..++.++. .+.++.|+|+|++. ....
T Consensus 115 ~yD~IiIDt~~~l~~~a~---~--aal~~AD-~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF---A--APLNYAD-YCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLI 188 (290)
T ss_pred cCCEEEEecCCcceechh---h--hhhhcCC-EEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHH
Confidence 499999999665332210 0 0011111 2667777776566555555544442 35678999999984 2223
Q ss_pred HHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 295 VPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 295 ~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
..+.+.+ +.|+++ ||+.....
T Consensus 189 ~~~~~~~--~~~vl~~Ip~~~~v~ 210 (290)
T CHL00072 189 DKYVEAC--PMPVLEVLPLIEDIR 210 (290)
T ss_pred HHHHHHc--CCceEEECCCChHHH
Confidence 3344444 889999 99765543
No 379
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0071 Score=68.43 Aligned_cols=235 Identities=16% Similarity=0.119 Sum_probs=133.3
Q ss_pred CChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 441 ~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
.++....|+++++++=| .+.++.++||-.|+.+++-... + + -..|+..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll-----~---------------~-GD~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALL-----K---------------A-GDHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhc-----C---------------C-CCEEEecCCccchHH
Confidence 47778899999999876 3689999999999988866552 1 1 136777777787632
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
...-.+- ..+|. ++.|-|. .+
T Consensus 117 ~~~~~~l--------------~~~gi------------------------------~~~~~d~-------~~-------- 137 (396)
T COG0626 117 RLFEKIL--------------QKFGV------------------------------EVTFVDP-------GD-------- 137 (396)
T ss_pred HHHHHHH--------------HhcCe------------------------------EEEEECC-------CC--------
Confidence 2211110 00010 0111111 00
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv 680 (817)
.+.+++.+. +.++.+|.+|+. ..----+.. +++|.++++++|+++|+|....+ +. .++-+..
T Consensus 138 ~~~~~~~~~-------~~~tk~v~lEtP-sNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P~--~q~PL~~ 199 (396)
T COG0626 138 DEALEAAIK-------EPNTKLVFLETP-SNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----PV--LQRPLEL 199 (396)
T ss_pred hHHHHHHhc-------ccCceEEEEeCC-CCccccccc----HHHHHHHHHhcCCEEEEECCccc----cc--ccChhhc
Confidence 022333332 246889999996 222222222 89999999999999999999842 11 1233333
Q ss_pred CCcee--ecccccCCCC-CcceEEEe-chHHHhhhcCCCccceeecccC-CC--CCHHHHHHHHHHHHHhcCcCchhcHH
Q 003472 681 VPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSFVGDSKLKALLHGHS-YS--AHALGCAAAAKSIKWFKDPQTNHNII 753 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy-~PlsAvl~-s~~i~d~~~~~~~~~~~~h~~T-~~--gnPla~AAAlA~L~~l~~~~l~~~l~ 753 (817)
-.||+ ..-|=|+|.- +-.|++++ ++++.+.+.. .... ++ ..|..|=-.+-.|+-+.- ..++..
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~--------~~~~~~G~~l~p~dA~l~lRGlkTL~~--Rm~~~~ 269 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFF--------AQRANTGAVLSPFDAWLLLRGLRTLAL--RMERHN 269 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHHHH--------HHHhhcCCCCCHHHHHHHHhccchHHH--HHHHHH
Confidence 47888 4679998732 23344554 4455554311 1111 21 245555444444443311 124455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceEE------------------eeeeEEEEEEecC
Q 003472 754 PERRILRELWDLELIQQISSHRTVQRVV------------------ALGTLCAIELQAA 794 (817)
Q Consensus 754 ~~~~~lg~~l~~~l~~~l~~~p~V~~Vr------------------G~Glm~gIel~~~ 794 (817)
+++..+.+ .++++|.|..|. |.|-|++|+|...
T Consensus 270 ~nA~~IA~--------~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~ 320 (396)
T COG0626 270 ENALKIAE--------FLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE 320 (396)
T ss_pred HHHHHHHH--------HHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh
Confidence 55555444 445566666553 5889999999873
No 380
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=97.26 E-value=0.0074 Score=64.88 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=71.2
Q ss_pred CChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHH
Q 003472 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (817)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~ 271 (817)
++.++....++++... +|++||-...|+.-+. ....... --+|+|+....-++..+..++
T Consensus 97 ~~~~~~~~~~~~l~~~-------------~D~iliD~~aGl~~~~------~~~~~~s-d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEEL-------------YDYILIDTGAGLSRDT------LSFILSS-DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhc-------------CCEEEEeCCCCccHHH------HHHHHhc-CcEEEEeCCCcchHHHHHHHH
Confidence 5667777777766654 7999999876654332 2222222 467889999999999999999
Q ss_pred HHHHhCCCcEEE--EEEccCC--CCCHH---HHHHhhcCCCcEEe-cCCCC
Q 003472 272 ESLKLRGYDVVA--VVFEDHG--LVNEV---PLMSYLRNRVPVLV-LPPLP 314 (817)
Q Consensus 272 ~~l~~~~~~v~g--vi~n~~~--~~~~~---~l~~~~~~~~pvlg-iP~~~ 314 (817)
+.+...+....+ +|+|++. .+..+ .+.+... .+|++. +|+.+
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~-~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVK-QVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHH-hCCceeEeccCh
Confidence 999999999888 9999983 23222 2222222 566777 89888
No 381
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.26 E-value=0.0038 Score=67.05 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~n~~~~~~~~ 295 (817)
++|+|||-+.|++..+... ..+..-+ -||+|+....-++..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~~-----~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGFA-----APLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccch-----hhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 4999999997655433110 1112222 356677766555555444444433 3467789999999843 12
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 003472 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 296 ~l~~~~~~-~~pvlg-iP~~~~~~ 317 (817)
.+++..+. +.|+++ ||+.+...
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 23333222 899999 99876654
No 382
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=97.24 E-value=0.026 Score=63.76 Aligned_cols=207 Identities=16% Similarity=0.121 Sum_probs=123.1
Q ss_pred ceeeccccccccCCCCCCCHHHHHHHHHHHHhcc-ccCCCCCC--ChHHHHHHHH-HHhhcCCCCcceEEEeCChHHHHH
Q 003472 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENV--YEPALECAEL-LLQGVGKGWASRAYFSDNGSTAIE 475 (817)
Q Consensus 400 ~ylD~~sg~~~~~LGh~~hP~V~~Ai~~q~~~~~-~~~~~~~~--~~~~~eLae~-L~~~~~~~~~~~v~f~~SGseA~E 475 (817)
-|||..+ .|=. +|+|.+|+......+. ......+. .....|.++. ++.+.+.. -.++.|+++++|||-
T Consensus 45 vyld~~a------t~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd-~~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINAD-PSDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCC-CCcEEEeCCchHHHH
Confidence 6888554 4556 9999999998776643 22111111 2222444444 34455543 245999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccc
Q 003472 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (817)
Q Consensus 476 ~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (817)
.+++-.-|.+.. + .++.||.+ ..-|.+...+....- ..| +
T Consensus 117 lvl~~v~~~~~~--~--------------~~k~iitl-~~eH~~v~~s~~~l~--------------~~g--~------- 156 (428)
T KOG1549|consen 117 LVLKGVARFFGD--K--------------TKKHIITL-QTEHPCVLDSCRALQ--------------EEG--L------- 156 (428)
T ss_pred HHHHHhhccccc--c--------------ccceEEEe-cccCcchhHHHHHHH--------------hcC--e-------
Confidence 999977222221 1 12244444 444554333222110 001 0
Q ss_pred cCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCc
Q 003472 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (817)
Q Consensus 556 ~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~ 635 (817)
.+..+|.+... +.| .+.+++.|+ .++.+|++.-| ..+-|+
T Consensus 157 --~Vt~lpv~~~~-----------~~d------------------~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 157 --EVTYLPVEDSG-----------LVD------------------ISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred --EEEEeccCccc-----------ccc------------------HHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 11223332111 011 245566664 37789999998 899999
Q ss_pred ccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEech
Q 003472 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATN 705 (817)
Q Consensus 636 ~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~ 705 (817)
..| +++|.++|+++|+.+..|=+| +. |+. -.+--.+.+|++++ =|.+|- =++|+.-+++
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQ-av---G~i-~vDV~eln~D~~s~s~HK~ygp--~~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQ-AV---GKI-PVDVQELNADFLSISAHKIYGP--PGIGALYVRR 257 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhh-hc---CCc-cccHHHcCchheeeecccccCC--CcceEEEEcc
Confidence 999 999999999999999999999 44 331 12333457888755 476653 1278888886
No 383
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.23 E-value=0.016 Score=62.74 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.++.+.++| -+|+||||+++-|+..+. ++|++|...-
T Consensus 71 ~~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 457888888 699999999999999994 7788888764
No 384
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.19 E-value=0.0063 Score=75.11 Aligned_cols=64 Identities=9% Similarity=-0.111 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~ 290 (817)
+|+|||.+.....+ ....-++...+ -||+|+..+.-....+..+++.++..+.++.|||+|++.
T Consensus 656 yD~IiID~pp~~~~-----~d~~~l~~~~D-~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~ 719 (754)
T TIGR01005 656 SDCVVVDVGTADPV-----RDMRAAARLAI-IMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLD 719 (754)
T ss_pred CCEEEEcCCCcchh-----HHHHHhhhhCC-eEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCC
Confidence 99999999553221 11222333333 356888877778888888999999888899999999973
No 385
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=97.19 E-value=0.038 Score=66.89 Aligned_cols=163 Identities=17% Similarity=0.200 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SG-seA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
+.+..+..+..++.+| .++.+|..+| |.+|.+++..+ ..+.+.|.++...|=|.
T Consensus 194 ~G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv 248 (713)
T PRK15399 194 TGPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYA----------------------APAGSTLLIDRNCHKSL 248 (713)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 4556666667777788 5788888777 45565555544 22346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecC-CchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~-P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..++.++|.. .|-.+ -+..+|... ++ |.++ .
T Consensus 249 ~~aLilsga~PVYl~P----~~n~~Gi~g--------------~I~~~~~----------------------------~- 281 (713)
T PRK15399 249 AHLLMMSDVVPIWLKP----TRNALGILG--------------GIPRREF----------------------------T- 281 (713)
T ss_pred HHHHHHcCCeeEEecc----cccccCCcC--------------CCChhhc----------------------------c-
Confidence 9999998853 22211 001111110 00 1010 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCc---EEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEE-Eeeeeeccccccccch
Q 003472 599 IYSSYISQNLLQNPGLKVSGC---IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI-FDEVFTGFWRLGVETT 674 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~---iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI-~DEV~TGfGRtG~~~a 674 (817)
.+.+++.|++. ++. .++||.-|-. .|+..- ++.|.++| |+.+| |||++-|.-+....+-
T Consensus 282 --~e~I~~~i~~~-----p~~~~p~~vvit~pTY---dGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~ 344 (713)
T PRK15399 282 --RDSIEEKVAAT-----TQAQWPVHAVITNSTY---DGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQ 344 (713)
T ss_pred --HHHHHHHHHhC-----CCcCCceEEEEECCCC---CceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccC
Confidence 15677777752 221 4788888853 456554 66677777 78885 9999976555555322
Q ss_pred -hhh--cCCCCcee-----ecccccCC
Q 003472 675 -ADL--LGCVPDIA-----CYGKLLTG 693 (817)
Q Consensus 675 -~e~--~gv~PDiv-----tlgK~Lgg 693 (817)
..- .+-.+|.+ ..=|-|++
T Consensus 345 ~~sam~~~~~aD~~i~~tQStHKtL~a 371 (713)
T PRK15399 345 GKSGMSGERVPGKVIFETQSTHKMLAA 371 (713)
T ss_pred CcChhhCCCCCCeeeeeeeehhccccc
Confidence 111 11146876 33466654
No 386
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.19 E-value=0.0053 Score=66.22 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHH---HHHHHHhCCCcEEEEEEccCCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS---AYESLKLRGYDVVAVVFEDHGLVN--- 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~---~~~~l~~~~~~v~gvi~n~~~~~~--- 293 (817)
++|+|||-..|++... .....++..---.+|+|+....-++..+-. .++..+..+.++.|+|+|+.....
T Consensus 116 ~yD~vlID~~~~~~~~----~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~ 191 (273)
T PRK13232 116 DLDYVFYDVLGDVVCG----GFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERE 191 (273)
T ss_pred cCCEEEEecCCCeeEC----CEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH
Confidence 4999999996543211 011111101112578888877666654443 444443456789999999863222
Q ss_pred -HHHHHHhhcCCCcEEe-cCCCCCC
Q 003472 294 -EVPLMSYLRNRVPVLV-LPPLPQD 316 (817)
Q Consensus 294 -~~~l~~~~~~~~pvlg-iP~~~~~ 316 (817)
.+.+++.+ +.++++ ||.....
T Consensus 192 ~~e~l~~~~--~~~vl~~Ip~~~~v 214 (273)
T PRK13232 192 LLEAFAKKL--GSQLIHFVPRDNIV 214 (273)
T ss_pred HHHHHHHHh--CCCeEEECCCCHHH
Confidence 23344555 778888 8876543
No 387
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.18 E-value=0.0074 Score=64.57 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|++|-|.| -.||||||+|..|+.+|. ++|+||...=
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 67888886 899999999999999994 7899998775
No 388
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.01 Score=63.18 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----------
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH---------- 289 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~---------- 289 (817)
.-|++||..-=|... ...+..+.++.- .=.|+|.....-++..+.-.+.+++..+++++|+|-|..
T Consensus 156 ~lDyLviDtPPGtsD---ehls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~ 231 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSD---EHLSLVQFLRES-DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHS 231 (300)
T ss_pred CcCEEEEeCCCCCCh---hhhheeeccccc-CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCc
Confidence 479999998433222 123334444432 126899999988899999999999999999999999974
Q ss_pred ----CCCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 003472 290 ----GLVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (817)
Q Consensus 290 ----~~~~~~~l~~~~~~~~pvlg-iP~~~~~~ 317 (817)
....-+.+.+.+ ++|+|| ||-.+.+.
T Consensus 232 ~~iF~~gGg~~l~~~~--glp~Lg~iPld~~i~ 262 (300)
T KOG3022|consen 232 TNIFGSGGGERLAEEL--GLPLLGSLPLDPLIA 262 (300)
T ss_pred ceeccCccHHHHHHHc--CCCeEeecCCCHHHH
Confidence 122346667777 999999 99776643
No 389
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0092 Score=67.24 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.+.|.|. +|+||||+.+.|+..|. ++|++|+..-
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 3478999999 99999999999999984 7788998765
No 390
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.09 E-value=0.0053 Score=64.03 Aligned_cols=63 Identities=22% Similarity=0.045 Sum_probs=47.9
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
+|+|||-+.- . .....+-+...+. .-+|+|+.....++.++...++.++..+.++.|+|+|++
T Consensus 114 yD~IIiD~pp-----~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTAP-----T-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCCC-----c-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 9999999832 2 1111122233333 248999999999999999999999999999999999987
No 391
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=96.99 E-value=0.045 Score=61.27 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhccccCC--CCCCChHHHHHHHHHHhhcCCCC--cceEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 003472 418 QIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (817)
Q Consensus 418 hP~V~~Ai~~q~~~~~~~~~--~~~~~~~~~eLae~L~~~~~~~~--~~~v~f~~SGseA~E~AlklA~r~~t~~~G~~~ 493 (817)
..-|.+|+++.+......+. ..+..+....|++++.++.+... .+.|+.++.+.+|.-.|+-... +
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~------ 115 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----N------ 115 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----C------
Confidence 45567777777766432221 11334566778888888554311 3568888888888887776551 1
Q ss_pred cccCCCccccccceEEEEEcCCccCCccccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhccc
Q 003472 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (817)
Q Consensus 494 ~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~ 573 (817)
.-..||.++-.|-.-.....-+++.+.+... ... .+. +..+++
T Consensus 116 -----------~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~-----~~~-------------~g~--~~s~~~------ 158 (420)
T KOG0257|consen 116 -----------PGDEVIVFEPFFDCYIPQVVMAGGTPVFVPL-----KPK-------------EGN--VSSSDW------ 158 (420)
T ss_pred -----------CCCEEEEecCcchhhhhHHhhcCCcceeecc-----ccc-------------ccc--ccCccc------
Confidence 1237888888887654433333333222110 000 000 111111
Q ss_pred ccccccccCcchhhhhccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhc
Q 003472 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (817)
Q Consensus 574 ~~~d~~~~d~~~~~~~~~~~~~~~~~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~ 653 (817)
..| .+.+|..+.+ ..-+.||.-|= .--|-+. +.+-|++|.++|++|
T Consensus 159 ------~~D------------------~~~le~~~t~-------kTk~Ii~ntPh--NPtGkvf-sReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ------TLD------------------PEELESKITE-------KTKAIILNTPH--NPTGKVF-SREELERIAELCKKH 204 (420)
T ss_pred ------cCC------------------hHHHHhhccC-------CccEEEEeCCC--CCcCccc-CHHHHHHHHHHHHHC
Confidence 112 1456666642 23356677773 4445555 788999999999999
Q ss_pred CCcEEEeeeeeccccccc---cchhhhcCCCCce-------eecccccCC-CCCcceEEEechHHHhhh
Q 003472 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI-------ACYGKLLTG-GVIPLAATLATNAVFDSF 711 (817)
Q Consensus 654 GilLI~DEV~TGfGRtG~---~~a~e~~gv~PDi-------vtlgK~Lgg-Gy~PlsAvl~s~~i~d~~ 711 (817)
|+++|.|||.--+=-.|. .+++ + |++ -.+||.+|- | .-+|-+++.+.++...
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~as----l-Pgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~ 267 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIAS----L-PGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSAL 267 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeec----C-CchhheEEEeccccceeeeee-eeeeeeechHHhhhhH
Confidence 999999999754322332 1221 2 554 367998885 7 7888899988887665
No 392
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.074 Score=60.20 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCCch---hhHhhhCC-CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQ---CDLYRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~---~~la~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--- 292 (817)
.+|++||.+||=+.. +..++ .++.+.++ ..+|||+|.-.|- .++.+.+.+.. .+.|-|||+.++.-+
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ--dA~~~A~aF~e-~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ--DAVNTAKAFNE-ALGITGVILTKLDGDARG 255 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch--HHHHHHHHHhh-hcCCceEEEEcccCCCcc
Confidence 489999999995433 22233 33333333 3489999966542 33334444543 478999999998322
Q ss_pred -CHHHHHHhhcCCCcEE
Q 003472 293 -NEVPLMSYLRNRVPVL 308 (817)
Q Consensus 293 -~~~~l~~~~~~~~pvl 308 (817)
..-.+...+ +.|+-
T Consensus 256 GaALS~~~~t--g~PIk 270 (451)
T COG0541 256 GAALSARAIT--GKPIK 270 (451)
T ss_pred hHHHhhHHHH--CCCeE
Confidence 233456677 77763
No 393
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.93 E-value=0.016 Score=61.01 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|.|++.-.|+||||+|..|+.+|. ++|+||...=
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 7899998876
No 394
>PRK15029 arginine decarboxylase; Provisional
Probab=96.91 E-value=0.018 Score=70.32 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA-~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+..++.+| .++.+|..+||.+ |.+++..+ ..+.+.|.++...|=+.
T Consensus 204 ~G~I~eAq~~aA~~fg---A~~t~FlvNGST~gn~a~i~a~----------------------~~~gd~Vlv~RN~HKSv 258 (755)
T PRK15029 204 TGAFGESEKYAARVFG---ADRSWSVVVGTSGSNRTIMQAC----------------------MTDNDVVVVDRNCHKSI 258 (755)
T ss_pred CcHHHHHHHHHHHHhC---CCcEEEEeCChhHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 3455565566666787 4688887777655 44333333 22346778999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~ 599 (817)
+.++.++|.. .|-.+ -+...|. +.| ++.. +..
T Consensus 259 ~~al~L~ga~Pvyl~P----~~~~~Gi----------------~~~------------i~~~-------------~~~-- 291 (755)
T PRK15029 259 EQGLILTGAKPVYMVP----SRNRYGI----------------IGP------------IYPQ-------------EMQ-- 291 (755)
T ss_pred HHHHHHcCCeEEEecc----cccccCC----------------ccC------------CCcc-------------ccC--
Confidence 9999999853 22111 0001111 000 0000 000
Q ss_pred HHHHHHHHHhcCCCC---CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccch
Q 003472 600 YSSYISQNLLQNPGL---KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (817)
Q Consensus 600 ~~~~Le~~L~~~~~~---~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a 674 (817)
.+.+++.|++.... .++.-.++||+-|-+ .|+..- ++.|.++|+++|++|++||+|-+..+.+..+.
T Consensus 292 -~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY---~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 292 -PETLQKKISESPLTKDKAGQKPSYCVVTNCTY---DGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred -HHHHHHHHHhCchhhhccccCceEEEEECCCC---cceeeC----HHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 14556666542100 111113677777853 455555 89999999999999999999976656666443
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.91 E-value=0.043 Score=62.91 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV--- 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~--- 292 (817)
.+|+|||.+||.. +. +...+.++.+... ..++||.+...|-- .....+.+.. ...+.|+|+++...+
T Consensus 182 ~~DvViIDTaGr~--~~-d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~-~~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRH--KQ-EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKD-SVDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCC--cc-hHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHh-ccCCcEEEEECccCCCCc
Confidence 4999999999942 22 2233344433322 24899999766521 1233344443 357899999998432
Q ss_pred -CHHHHHHhhcCCCcEEecCC
Q 003472 293 -NEVPLMSYLRNRVPVLVLPP 312 (817)
Q Consensus 293 -~~~~l~~~~~~~~pvlgiP~ 312 (817)
..-.+...+ ++|+..+..
T Consensus 256 G~aLs~~~~t--~~PI~fig~ 274 (429)
T TIGR01425 256 GGALSAVAAT--KSPIIFIGT 274 (429)
T ss_pred cHHhhhHHHH--CCCeEEEcC
Confidence 223344555 888866544
No 396
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=96.88 E-value=0.066 Score=60.29 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=70.4
Q ss_pred cCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC--CCCcceEEEechH
Q 003472 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--GVIPLAATLATNA 706 (817)
Q Consensus 631 g~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg--Gy~PlsAvl~s~~ 706 (817)
...|++.| ++ ++++++|+++|+|=||+ +|- ...-.+ .-|++++ -|.+|+ | ++.+.++++
T Consensus 139 t~tG~~~p----i~---~I~~~~g~~~iVDavqs-~g~--~~idv~----~~D~~~~s~~K~lg~~~G---l~~~~~s~~ 201 (361)
T TIGR01366 139 TSTGVAVP----VR---RPEGSDDALVVIDATSG-AGG--LPVDIA----ETDVYYFAPQKNFASDGG---LWLAIMSPA 201 (361)
T ss_pred Cccceecc----cc---cccccCCCeEEEEcCcc-ccC--CCCCHH----HCCEEEEEchhhcCCCCc---eEEEEECHH
Confidence 33567766 33 34789999999999996 321 111112 1488866 488874 3 455667888
Q ss_pred HHhhhcCCCcc---ce-e----------ecccCCCCCHHH-HHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 707 VFDSFVGDSKL---KA-L----------LHGHSYSAHALG-CAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 707 i~d~~~~~~~~---~~-~----------~h~~T~~gnPla-~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
..+.+...... .+ + .-+.|+...++. +.+..++|+++++++-.++..++.+.+.+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~ 278 (361)
T TIGR01366 202 ALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQ 278 (361)
T ss_pred HHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 87665421000 00 0 012444444444 446778999997763346666777777776655443
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.88 E-value=0.061 Score=53.67 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.++|. +|+|||+++..|+..+. ++|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 455555 89999999999999984 6688888776
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.87 E-value=0.059 Score=59.70 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.+.| -+|+||||+++.|+..+. .+|++|...-
T Consensus 113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 356888999 589999999999999994 6688887754
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.84 E-value=0.015 Score=56.31 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=54.0
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhC-CCcEEEEEEccCCCCC-HHHHH
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLVN-EVPLM 298 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~~-~~~l~ 298 (817)
+|++||.+.+++ +.....+++..+. +|+|+....-++..+...++.+... +..-.++|+|++.... .+.+.
T Consensus 45 yd~VIiD~p~~~------~~~~~~~l~~aD~-vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI------SDNVLDFFLAADE-VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC------CHHHHHHHHhCCe-EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHH
Confidence 578899986543 2233455666653 7788888888888878877777643 3456789999984322 22222
Q ss_pred H--------hhcCCCcEEe-cC
Q 003472 299 S--------YLRNRVPVLV-LP 311 (817)
Q Consensus 299 ~--------~~~~~~pvlg-iP 311 (817)
+ +...++|++| ||
T Consensus 118 ~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 118 KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHHhCCChhhceecC
Confidence 2 2222789999 87
No 400
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=96.83 E-value=0.12 Score=58.23 Aligned_cols=276 Identities=13% Similarity=0.016 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
+...+|.+.|+++.| ++.|.+ -|+|+..=-+.|-+. |+|+..+|. ...+++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~-------------~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE-------------GHRNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCC-------------CcCcEEEeeccccCCCh
Confidence 445689999999998 667665 789999988888888 888877764 24577788899999765
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.+.++.|-. .|..+..-. .+. + +
T Consensus 172 ASAam~G~~------------------------------VV~V~~~~~-----------G~V-----------D-----l 194 (496)
T COG1003 172 ASAAMAGFK------------------------------VVVVKCDEN-----------GNV-----------D-----L 194 (496)
T ss_pred hhHhhcCce------------------------------EEEEecCCC-----------CCc-----------c-----H
Confidence 555554321 111111000 000 0 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEE-EccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee----eeccccccccch-h
Q 003472 602 SYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-A 675 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvI-vEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV----~TGfGRtG~~~a-~ 675 (817)
+.|+..++ +++||+. .-| +.-|+. ++-.+++.++.+++|..|..|=+ +-|.-|-|.+++ .
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvF---E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVF---EEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccc---hhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 45555443 5666654 455 334443 34477888888999999999976 557767777543 2
Q ss_pred hhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcC----CCcc---------ceeecccCCCCCHHHHHHHHHHHH
Q 003472 676 DLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVG----DSKL---------KALLHGHSYSAHALGCAAAAKSIK 741 (817)
Q Consensus 676 e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~----~~~~---------~~~~h~~T~~gnPla~AAAlA~L~ 741 (817)
.|+++.- ||+-.=||| -| .|-|.+++.+..++.. .... ....-..+|-||..-...+.+-+.
T Consensus 261 ~HlNLHK---TF~iPHGGG-GPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~ 336 (496)
T COG1003 261 VHLNLHK---TFCIPHGGG-GPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIR 336 (496)
T ss_pred EEeeccc---ccccCCCCC-CCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHH
Confidence 3444321 444444554 23 3456677887777654 1110 122346688899999999999998
Q ss_pred HhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeEEEEEEecCCC---CCCcchHHHHHHHHHHcCCCC
Q 003472 742 WFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGC---NAGYCLIELFLYNFLTTGMHP 817 (817)
Q Consensus 742 ~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~---~~~~~~~~~~~~~~l~~Gv~~ 817 (817)
.|-.+++. .+-+.+-.-..|+.++|.. .+++.- .|.+ ..+-|++-+.. ...-....-+.+++++.|+||
T Consensus 337 ~mG~~GL~-~ase~AvLNANYia~rL~~---~y~~~y--~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHa 408 (496)
T COG1003 337 MMGADGLK-QASEVAVLNANYIARRLKG---YYPVPY--TGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHA 408 (496)
T ss_pred HHhHHHHH-HHHHHHHHhHHHHHHHhhh---cCcccc--CCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCC
Confidence 88664442 2223332333444333321 444421 2222 44555544420 011156777899999999996
No 401
>PHA02518 ParA-like protein; Provisional
Probab=96.83 E-value=0.036 Score=56.81 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|-|++.-.||||||+|..|..+|. ++|++|...-
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 46789999999999999999999994 7899987765
No 402
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.021 Score=63.10 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T 664 (817)
++.+|.++++ .++|.||+-|- .-.| .+ .+..-|++|.++|+++|+++|.|||..
T Consensus 189 L~~veal~DE-------NT~AivviNP~-NPcG-nV-ys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 189 LDGVEALADE-------NTVAIVVINPN-NPCG-NV-YSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred hHHHHHhhcc-------CeeEEEEeCCC-CCCc-cc-ccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 3667777663 57899999995 4444 33 389999999999999999999999973
No 403
>PRK14974 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.022 Score=63.38 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++++| -+|+||||+++.|+..|. .+|++|+..-
T Consensus 140 ~~vi~~~G-~~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVG-VNGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEc-CCCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 46788888 599999999999999994 6788887743
No 404
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.79 E-value=0.021 Score=61.82 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|++|.|.| -.||||||+|..|+.+|. ++|+||..+=
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 68899998 899999999999999995 8899998774
No 405
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.73 E-value=0.026 Score=60.90 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|.|.| -.||||||+|..|+.+|. ++|+||..+=
T Consensus 1 ~~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred CeeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3578888 899999999999999995 7899998864
No 406
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.71 E-value=0.0044 Score=70.44 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
|+.|-|+|- +|+||||+...|+..|+ ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 678999998 69999999999999994 89999999994
No 407
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=96.70 E-value=0.053 Score=61.41 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=73.8
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCCCcceEEEechHHHh
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy~PlsAvl~s~~i~d 709 (817)
..|.+.| +++|.+ +++|+++|+|=+|+ +|-. -+-.+. -|++++ -|.|++- .=+|.+.++++..+
T Consensus 148 ~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~~----iD~~~~s~~K~l~~P-~G~g~l~v~~~~~~ 213 (378)
T PRK03080 148 TTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWSK----LDVYTFSWQKVLGGE-GGHGMAILSPRAVE 213 (378)
T ss_pred ccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHHH----CcEEEEehhhhCCCC-CceEEEEECHHHHH
Confidence 3578887 777777 78999999999995 4321 121221 388855 5888762 11688999999887
Q ss_pred hhcCCCc------cc---------e-eecccCCCC-CHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHH
Q 003472 710 SFVGDSK------LK---------A-LLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLEL 767 (817)
Q Consensus 710 ~~~~~~~------~~---------~-~~h~~T~~g-nPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l 767 (817)
.+..... .. . ..-..|+.- +-.+..+..++|+.+.+.+-.+++.++.+.+.+++.+.+
T Consensus 214 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l 288 (378)
T PRK03080 214 RLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWA 288 (378)
T ss_pred hhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 6542100 00 0 011223322 334455558899999775234666777777777665543
No 408
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=96.69 E-value=0.087 Score=59.20 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCcEEEeeeeeccccccccchh-hhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCCCccce
Q 003472 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGDSKLKA 719 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~-e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~~~~~~ 719 (817)
++++.++|+++|+++|+|-.- |. +.-+.... +.+..-+|+|++| |.|||= --|-+++++++++.+....
T Consensus 176 ~~~l~~ia~~~~lpvivD~aS-g~-~v~~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~---- 247 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLAS-GA-LVDKEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHP---- 247 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCC-cc-ccccccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhh----
Confidence 788999999999999999876 43 32232222 3344568999884 778761 1234899999998886542
Q ss_pred eecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 720 LLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 720 ~~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
.+.-.--.+...|+-.++|+.+..++
T Consensus 248 --l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 248 --LKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred --hhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 33445567899999999999997743
No 409
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.64 E-value=0.08 Score=56.81 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.|-|++.-.||||||+|+.|+.+|. ++|++|...=
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 588999999999999999999999994 7799988765
No 410
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.60 E-value=0.005 Score=60.98 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g 83 (817)
+.|+|. +|+||||++..|++.|+ ++|++|+++|+...+
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHD 39 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEeccccc
Confidence 567887 69999999999999994 779999999986544
No 411
>PLN02590 probable tyrosine decarboxylase
Probab=96.60 E-value=0.33 Score=57.55 Aligned_cols=97 Identities=9% Similarity=-0.084 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv- 680 (817)
+.|++.|++.. +.+....+|+.-- ....-|.+-| +++|.++|++||+.|=+|=+..|+...-...-.-..|+
T Consensus 272 ~~L~~~I~~d~--~~g~~P~~VvaTa-GTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie 344 (539)
T PLN02590 272 ESLEEAISHDL--AKGFIPFFICATV-GTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344 (539)
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEEe-CCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCc
Confidence 44555554310 1123344444443 2445577777 99999999999999999988877643322222222365
Q ss_pred CCceeec--ccccCCCCCcceEEEechH
Q 003472 681 VPDIACY--GKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 681 ~PDivtl--gK~LggGy~PlsAvl~s~~ 706 (817)
..|=+++ -|-|.-. ++.|+++++..
T Consensus 345 ~ADSit~D~HK~l~~p-~~cg~llvr~~ 371 (539)
T PLN02590 345 NADSFNMNAHKWLFAN-QTCSPLWVKDR 371 (539)
T ss_pred cCCEEEECchhhcCcC-cCEEEEEecCH
Confidence 3676654 6777666 68888998864
No 412
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.60 E-value=0.014 Score=58.18 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g 83 (817)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+.+|.-..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 678999999 59999999999999994 789999999965443
No 413
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=96.59 E-value=0.13 Score=57.67 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=95.6
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCC
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy 695 (817)
.-|+.+-.|.. .|+..+ ++++.+|+++|+|=||+ +|- .-.-.+.+ |++++ -|.+|
T Consensus 132 ~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g~--~~id~~~~----d~~~~ssqK~lg--- 188 (349)
T TIGR01364 132 AYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-ILS--RPIDVSKF----GLIYAGAQKNIG--- 188 (349)
T ss_pred CEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-ccC--ccCCHHHc----cEEEEecccccC---
Confidence 34666666664 355442 77888999999999996 321 12222222 46654 48884
Q ss_pred Cc-ceEEEechHHHhhhcCCCc-ccee----ecccCC-CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IP-LAATLATNAVFDSFVGDSK-LKAL----LHGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~-~~~~----~h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
-| +|.+.++++..+.+..... ...+ ....++ +-|-....+..++|+++.+++-.+++.++.+.+.+++.+.+.
T Consensus 189 P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 189 PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35 8899999999876643211 0000 012334 334555666668999998763257777878888877665443
Q ss_pred HHHHcCC-C--c-c--eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCC
Q 003472 769 QQISSHR-T--V-Q--RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 769 ~~l~~~p-~--V-~--~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv 815 (817)
+.+ + . . +.|. ....+|.+.+. .....++..+.++|+
T Consensus 269 ----~~~gl~~~~~~~~~rs-~~v~sf~~~~~------~~~~~~~~~~~~~Gi 310 (349)
T TIGR01364 269 ----NSNGFYRNPVDPRNRS-RMNVVFTLGNE------ELEKRFLKEAEERGL 310 (349)
T ss_pred ----hCCCeeccCCCHHHcC-CeEEEEecCCh------hHhHHHHHHHHHCCC
Confidence 333 1 1 1 1232 35566665433 123566677777875
No 414
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.59 E-value=0.031 Score=59.86 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC-CHHHHH
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-NEVPLM 298 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~-~~~~l~ 298 (817)
++|+|||-+.|++.... .. ..++...---+|+|+....-++..+-..++.++.-+..+.|+|.|..... ..+.++
T Consensus 113 ~yD~ViIDt~~~~~~~~---~~-~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGG---FS-VPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCCEEEEecCCCceEcc---cc-ccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 49999999966432110 00 00000111257777888777777777777777654445778888876322 223333
Q ss_pred HhhcC-CCcEEe-cCCCCCCC
Q 003472 299 SYLRN-RVPVLV-LPPLPQDS 317 (817)
Q Consensus 299 ~~~~~-~~pvlg-iP~~~~~~ 317 (817)
+..+. +.++++ ||......
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v~ 209 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLVQ 209 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHHH
Confidence 32222 788888 88765543
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.057 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.++|+|. +||||||+++.|+..+. ++|++|.++-
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3578889997 69999999999999884 6788888754
No 416
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.54 E-value=0.035 Score=59.90 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~-~g~~v~~~K 78 (817)
++.|-|+ --.||||||+|.-|+.+|. + +|+||..+=
T Consensus 2 ~~vIav~-~KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred ceEEEEE-cCCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 4778888 4899999999999999994 4 599998764
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.03 Score=64.42 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.|. +||||||+++.|+..+.+ . +.|++|.++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~--~-~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYAL--L-YGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCeEEEEE
Confidence 468889999 899999999999988730 1 4578999886
No 418
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.51 E-value=0.12 Score=56.09 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=41.0
Q ss_pred CCchh---HHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 8 HYPDH---HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 8 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|+| -+.+|.++.-|. + +...|=|||+ .|+||||+.-.|.+.|. ++|+||+..-
T Consensus 29 ~~~~h~~~a~~ll~~l~p~t-G---------~a~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 29 RRPDHRALARELLRALYPRT-G---------NAHVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred CCchhhhHHHHHHHHHhhcC-C---------CCcEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 45555 445666665442 2 2348899998 89999999999999994 8999988775
No 419
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.51 E-value=0.039 Score=60.41 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+|+.+-|.| -.|||||++++-|+.+|. ++|+||..+=
T Consensus 5 ~~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred CceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 567888888 789999999999999995 7899999885
No 420
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.085 Score=61.75 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.+.|+|. +|+||||++..|+..+.. + ..|++|.++-
T Consensus 348 ~~G~vIaLVGP-tGvGKTTtaakLAa~la~--~-~~gkkVaLId 387 (559)
T PRK12727 348 ERGGVIALVGP-TGAGKTTTIAKLAQRFAA--Q-HAPRDVALVT 387 (559)
T ss_pred cCCCEEEEECC-CCCCHHHHHHHHHHHHHH--h-cCCCceEEEe
Confidence 45678889997 699999999999988741 1 1256777664
No 421
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.48 E-value=0.091 Score=55.53 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|.|++.-.||||||++..|+.+|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678999999999999999999999994 8899998776
No 422
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=96.45 E-value=0.19 Score=58.49 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=45.7
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchh--h-hcCC-CCceeec-ccccCCCCCcceEEEechH
Q 003472 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D-LLGC-VPDIACY-GKLLTGGVIPLAATLATNA 706 (817)
Q Consensus 632 ~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~--e-~~gv-~PDivtl-gK~LggGy~PlsAvl~s~~ 706 (817)
.-|.+-| +++|.++|++||+.+-+|=...||=. .+.-. . .+++ ..|-+|+ +-.+|.-.+|.|+++.+++
T Consensus 219 ~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~--pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 219 DTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLL--PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred CCCccCC----HHHHHHHHHHcCCcEEEEccccceee--cccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence 3455555 99999999999999999999987622 11111 1 1344 3455544 3455555577888999887
No 423
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.45 E-value=0.016 Score=62.67 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
|+.|.|+|. +|+||||++..|++.|. ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 678999999 59999999999999994 789 8999994
No 424
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=96.43 E-value=0.16 Score=57.01 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcCCCc-cc--e--ee
Q 003472 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LK--A--LL 721 (817)
Q Consensus 648 ~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~~~~-~~--~--~~ 721 (817)
++++.||+++++|=+|+ +|-. -.-.+.+++ ++..--|.+ | .| +|.+.+++++.+.+..... .. . ..
T Consensus 157 ~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~l--G-P~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd00611 157 EVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNL--G-PAGVTVVIVRKDLLGKARKITPSMLNYKTHAD 228 (355)
T ss_pred eecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeeccccc--C-CCceEEEEECHHHHhhcccCCCCcccHHHHHh
Confidence 56677999999999997 3221 222233332 222234766 3 34 7889999998876542110 00 0 00
Q ss_pred cccCC-CCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHcC-CCcc--eEEeeeeEEEEEEecCCCC
Q 003472 722 HGHSY-SAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSH-RTVQ--RVVALGTLCAIELQAAGCN 797 (817)
Q Consensus 722 h~~T~-~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~~-p~V~--~VrG~Glm~gIel~~~~~~ 797 (817)
...++ +-|-.+..+..++|+++++++-.+++.++.+.+.+++.+.+.++ ... ..+. ..|. +..++|.+...
T Consensus 229 ~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~-~gl~~~~~~~~~rs-~~vvsf~~~~~--- 303 (355)
T cd00611 229 NNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS-NGFYRGPVDKRARS-RMNVPFRLGKE--- 303 (355)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-ccccccCCCHHHcC-ceEEEEEcCCh---
Confidence 11123 33455677777899999876224777777788888776654432 111 0111 1222 35566665432
Q ss_pred CCcchHHHHHHHHHHcCCC
Q 003472 798 AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 798 ~~~~~~~~~~~~~l~~Gv~ 816 (817)
.....++..+.++|++
T Consensus 304 ---~l~~~~~~~~~r~G~~ 319 (355)
T cd00611 304 ---ELEKEFLKEAEAAGMI 319 (355)
T ss_pred ---hhhHHHHHHHHHCCCc
Confidence 2224555677778875
No 425
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=96.43 E-value=0.14 Score=57.67 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=94.2
Q ss_pred CcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCCCC
Q 003472 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGV 695 (817)
Q Consensus 618 ~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~LggGy 695 (817)
.-|+.+-.|.. .|+..++ +++ + +|+++|+|=||+ +| +.-.-.+.+ |++++ -|.+|
T Consensus 143 ~~V~~th~eTs----tGv~~~~---i~~---i---~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg--- 199 (360)
T PRK05355 143 AYVHYTSNETI----DGTEFHE---LPD---T---GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG--- 199 (360)
T ss_pred CEEEEccCCCc----ceEecCc---ccc---c---CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc---
Confidence 34555556654 4666532 333 3 899999999996 42 222222222 57655 48874
Q ss_pred Cc-ceEEEechHHHhhhcCCCc-cce----eecccC-CCCCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHH
Q 003472 696 IP-LAATLATNAVFDSFVGDSK-LKA----LLHGHS-YSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 696 ~P-lsAvl~s~~i~d~~~~~~~-~~~----~~h~~T-~~gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
-| +|.+.++++..+.+..... ... .....| ++-|-....+..++|+++.+++-.+++.++.+.+.+++.+.+
T Consensus 200 P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l- 278 (360)
T PRK05355 200 PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI- 278 (360)
T ss_pred CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-
Confidence 34 7889999999877643100 000 001122 234556666677899999876224677777777777666543
Q ss_pred HHHHcCCCcc-----eEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHcCCC
Q 003472 769 QQISSHRTVQ-----RVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 769 ~~l~~~p~V~-----~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~Gv~ 816 (817)
++.+.+. ..| .+....|.+... .....++..+.++|++
T Consensus 279 ---~~~~~~~~~~~~~~r-s~~v~sf~~~~~------~~~~~~~~~~~~~Gi~ 321 (360)
T PRK05355 279 ---DSSDFYRNPVAPEDR-SRMNVPFTLADE------ELDKKFLAEAKAAGLV 321 (360)
T ss_pred ---HhCCCcccCCChhhc-CCcEEEEEcCCh------HHHHHHHHHHHHCCCc
Confidence 3334321 123 235566665432 2235676788888875
No 426
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.33 E-value=0.032 Score=58.76 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCC--CCCCCchhhHhhhCCCC-EEEEE-----c---CCCCh
Q 003472 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLP-GILVG-----D---GRLGG 263 (817)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p--~~~~~~~~~la~~l~~p-vilV~-----~---~~~g~ 263 (817)
++|.+++.+..+. ...|+||||=-|-+.+. ++.-...-++...++-. +++|- - .+.--
T Consensus 118 ~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~K 186 (255)
T cd03113 118 DEIKERIRRVAEK-----------SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELK 186 (255)
T ss_pred HHHHHHHHHhhcc-----------CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccc
Confidence 5666666665532 34899999986655443 11112334444444422 32221 1 11112
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccC---CCCCHHHHHHhhcCCCcEEe-cCCC
Q 003472 264 ISGTISAYESLKLRGYDVVAVVFEDH---GLVNEVPLMSYLRNRVPVLV-LPPL 313 (817)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~n~~---~~~~~~~l~~~~~~~~pvlg-iP~~ 313 (817)
---|-++++.|+++|+++.++|+|.- ...+.+.|.... ++|+.+ +|..
T Consensus 187 TKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFc--nVpve~VI~~~ 238 (255)
T cd03113 187 TKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC--DVPPEAVISAP 238 (255)
T ss_pred cCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhc--CCCHHHeeecC
Confidence 34567899999999999999999985 334556666666 999988 5543
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.099 Score=59.39 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCC--chhhHhhhCCC--CEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCC-CC
Q 003472 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGL-VN 293 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~--~~~~la~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~n~~~~-~~ 293 (817)
++|+|||-++|.. +.+... -...+....+. .++||.+...+. +... +.+.. ..+.+-|+|+.+.+. ..
T Consensus 254 ~~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~---~~~~~~~~~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVK---EIFHQFSPFSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHH---HHHHHhcCCCCCEEEEEeccCCCc
Confidence 3899999999954 321100 11233333333 489999987663 2222 33332 346789999999833 22
Q ss_pred ---HHHHHHhhcCCCcEEec
Q 003472 294 ---EVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 294 ---~~~l~~~~~~~~pvlgi 310 (817)
.-.+...+ ++|+.-+
T Consensus 328 ~G~~l~~~~~~--~~Pi~yi 345 (388)
T PRK12723 328 VGNLISLIYEM--RKEVSYV 345 (388)
T ss_pred chHHHHHHHHH--CCCEEEE
Confidence 22233344 7887554
No 428
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.26 E-value=0.14 Score=53.83 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-+.++-.|+||||.+++|+..|. ++|.+|..+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678899999999999999999999994 7899998876
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.20 E-value=0.28 Score=54.66 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=38.5
Q ss_pred HHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 13 HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.|+.++..| +.+ ...+-|+|. .|+||||++..|...|. .+|++|+.+.
T Consensus 42 ~~~l~~~~~~~-~~~---------~~~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 42 AQELLDALLPH-TGN---------ALRIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred HHHHHHHHhhc-CCC---------cEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 45577776554 222 247888888 99999999999999994 6799998887
No 430
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.18 E-value=0.071 Score=57.53 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-|++ -.||||||+|..|..+|. ++|+||..+=
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 56788886 899999999999999994 8899998874
No 431
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=96.15 E-value=0.0091 Score=63.60 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCEEEEeCC-----CCCCCCCCCCCchhhHhhhCCCCEEEEEcCCCChH---HHHHHHHHHHHhCC-CcEEEEEEccCC
Q 003472 220 MEILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG-YDVVAVVFEDHG 290 (817)
Q Consensus 220 ~~d~vivEGa-----gg~~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~-~~v~gvi~n~~~ 290 (817)
+.|+|+-.-. ||++.|+.++. --.|++|+++...++ |.+..+++.+..++ .++.|+|.|.-.
T Consensus 116 ~~D~v~yDVLGDVVCGGFamPir~g~---------a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~ 186 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGGFAMPIREGY---------AQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN 186 (273)
T ss_dssp TSSEEEEEEESSSSCTTTTHHHHTTS----------SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS
T ss_pred CCceEEEEEEeeeEEeeeehhhhhcc---------CCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC
Confidence 4788776543 55666654332 236889999887665 55555666665554 589999999653
Q ss_pred -CCCHHHHHHhhcC-CCcEEe-cCCCCCCC-----cchhhhhhccch--hhhhhHHHHHH
Q 003472 291 -LVNEVPLMSYLRN-RVPVLV-LPPLPQDS-----SNDLMEWFDESH--NVFDSLKNIML 340 (817)
Q Consensus 291 -~~~~~~l~~~~~~-~~pvlg-iP~~~~~~-----~~~~~~~l~~~~--~~f~~l~~~l~ 340 (817)
+...+.++++.+. +.|+++ ||..+... ..++.|+.-.+. ..|..|.+.+.
T Consensus 187 ~~~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~P~s~~a~~yr~LA~~I~ 246 (273)
T PF00142_consen 187 VDDEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAAPDSEQAQEYRELARKIL 246 (273)
T ss_dssp STTHHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-TTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 3334444444444 999999 99876543 235555444442 23555444443
No 432
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=96.13 E-value=0.4 Score=56.66 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=52.2
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhhc--CCcEEEeeeeeccccccccchhhhcCCCCc-e---eecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-I---ACYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~--GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i---vtlgK~Lg-g 693 (817)
+.+|+-|- .=-|.+. +++-+++|.++|++| ++++|.|||..-|- ..+- ......|| + .++||.+| .
T Consensus 243 ai~l~nP~--NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~--sl~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 243 ALFVVNPS--NPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFR--SLFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhc--cccc--chhhhCCCCEEEEEcchhhccCc
Confidence 44556883 3345544 788999999999987 99999999996562 2211 11122354 2 27999987 5
Q ss_pred CCCcceEEEechH
Q 003472 694 GVIPLAATLATNA 706 (817)
Q Consensus 694 Gy~PlsAvl~s~~ 706 (817)
| +=+|.+++.++
T Consensus 316 G-~RlG~i~~~~~ 327 (521)
T TIGR03801 316 G-WRLGTIALHKD 327 (521)
T ss_pred h-hhhhhhhcCch
Confidence 6 67777888754
No 433
>PLN02397 aspartate transaminase
Probab=96.11 E-value=0.088 Score=60.56 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=50.8
Q ss_pred ccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc----cchhhhcCCCC-cee---ecccccC-CCCCcceE
Q 003472 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVP-DIA---CYGKLLT-GGVIPLAA 700 (817)
Q Consensus 630 qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~----~~a~e~~gv~P-Div---tlgK~Lg-gGy~PlsA 700 (817)
+.=-|.+. +.+.+++|.++|++||+++|.||+..+|. .+. ......+--.. .++ +|||.++ .| +=+|.
T Consensus 204 ~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~-~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~ 280 (423)
T PLN02397 204 HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFA-SGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGA 280 (423)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCcc-CCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceE
Confidence 34346655 78899999999999999999999998883 221 11111111122 344 7899999 57 67887
Q ss_pred EE--e-chHHHh
Q 003472 701 TL--A-TNAVFD 709 (817)
Q Consensus 701 vl--~-s~~i~d 709 (817)
++ + .+++++
T Consensus 281 ~v~~~~~~~~~~ 292 (423)
T PLN02397 281 LSVVCKSADVAV 292 (423)
T ss_pred EEEEeCCHHHHH
Confidence 74 3 555444
No 434
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=96.03 E-value=0.089 Score=57.60 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+|+.|-|. --.||||||++.-|..+|. ++|+||..+=
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 57788787 6889999999999999994 8899998874
No 435
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.00 E-value=0.015 Score=63.30 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+.+.+.||+..+||-|.++.|.++|+ ++|+++.+.-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4689999999999999999999999995 8899998865
No 436
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.97 E-value=0.31 Score=53.48 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.+.|+|. +|+||||++..|+..+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 568889987 99999999999999994 7799998776
No 437
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.11 Score=57.90 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCCCCcee--ecccccCCCCCcceEEEech-HHHhhhc
Q 003472 637 MVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (817)
Q Consensus 637 ~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv~PDiv--tlgK~LggGy~PlsAvl~s~-~i~d~~~ 712 (817)
.+-+--++++|++|++-|+.|++|=.|- |+ --|..+- .-.. ..|++ |.=|.|-|- --|.+++++ ++.+.+.
T Consensus 177 Y~r~id~~~~reIad~VGA~L~~DmAHiaGL-VA~G~~p-~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kkin 251 (413)
T COG0112 177 YSRPIDFKRFREIADEVGAYLMVDMAHVAGL-IAGGVHP-NPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKKIN 251 (413)
T ss_pred cccccCHHHHHHHHHHhCceEEehHHHHHHH-HhcccCC-CCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHHhh
Confidence 3334449999999999999999999983 44 1111111 1111 25888 567888751 012466774 7777775
Q ss_pred CCCccceeecccCCCCCHHHHHH--HHHHHHHhcC--cCchhcHHHHHHHHHHHHHHHHHHHH
Q 003472 713 GDSKLKALLHGHSYSAHALGCAA--AAKSIKWFKD--PQTNHNIIPERRILRELWDLELIQQI 771 (817)
Q Consensus 713 ~~~~~~~~~h~~T~~gnPla~AA--AlA~L~~l~~--~~l~~~l~~~~~~lg~~l~~~l~~~l 771 (817)
.. .+..+.+|+-+-.-| |.|.-+.++- .+..+++.+|++.|.+.|.++..+.+
T Consensus 252 ~a------VFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vv 308 (413)
T COG0112 252 SA------VFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVV 308 (413)
T ss_pred hh------cCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 32 233344443222222 2233333322 24568889999998887665444333
No 438
>PLN02263 serine decarboxylase
Probab=95.88 E-value=0.84 Score=53.15 Aligned_cols=180 Identities=9% Similarity=-0.024 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHHhhcCCCCcc-eEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~-~v~f~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
++...++-+.++++++-+.-+ .-+++++|||||-.||..| |.+.. ..++.....-|-+.
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aA-Re~~~-------------------~~vvy~S~~aH~Sv 191 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVG-REVFP-------------------DGILYASRESHYSV 191 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHH-HhhcC-------------------CcEEEEcCCccHHH
Confidence 444556666666666532101 3588999999999999999 55421 13566666666544
Q ss_pred cccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHH
Q 003472 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (817)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~ 600 (817)
.=+..+-|-. +..+|....+ -+ |
T Consensus 192 ~KAa~llgi~----------------------------~~~Vp~d~~g-------------~m--------D-------- 214 (470)
T PLN02263 192 FKAARMYRME----------------------------CVKVDTLVSG-------------EI--------D-------- 214 (470)
T ss_pred HHHHHhcCCc----------------------------ceEeccCCCC-------------cC--------c--------
Confidence 4343333221 1122211110 01 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCC-----cEEEeeeeeccccccccch-
Q 003472 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT- 674 (817)
Q Consensus 601 ~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~Gi-----lLI~DEV~TGfGRtG~~~a- 674 (817)
.+.|++.|++ ...+...|+.-- ....-|.+-| +++|.++|+++|+ .|=+|=...|+- -.+.-
T Consensus 215 ~~aL~~aI~~-----d~~~P~iVvata-GTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~--lPf~~~ 282 (470)
T PLN02263 215 CADFKAKLLA-----NKDKPAIINVNI-GTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLM--MPFVKR 282 (470)
T ss_pred HHHHHHHHHh-----CCCCcEEEEEEe-cCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhH--hhhccc
Confidence 2566777763 123344444332 2445577777 9999999999997 888998887651 11110
Q ss_pred hhhcC--CCCceeec--ccccCCCCCcceEEEechHHHhhh
Q 003472 675 ADLLG--CVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (817)
Q Consensus 675 ~e~~g--v~PDivtl--gK~LggGy~PlsAvl~s~~i~d~~ 711 (817)
...++ ...|=+++ =|-++.- +|.|+++.++...+.+
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~ 322 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVL 322 (470)
T ss_pred ccccCCCcCccEEEECCccccCCC-cCEEEEEEehhhHhhh
Confidence 00111 12454444 3655556 7889999998766555
No 439
>PRK09275 aspartate aminotransferase; Provisional
Probab=95.84 E-value=0.22 Score=58.94 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=52.1
Q ss_pred EEEEEccccccCCCcccCCHHHHHHHHHHHhh--cCCcEEEeeeeeccccccccchhhhcCCCCc-e---eecccccC-C
Q 003472 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I---ACYGKLLT-G 693 (817)
Q Consensus 621 AAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~--~GilLI~DEV~TGfGRtG~~~a~e~~gv~PD-i---vtlgK~Lg-g 693 (817)
+.+|+-| +.=-|.+. +++-+++|.++|++ +|+++|.|||..-|. +... ......|| + .+|||.+| .
T Consensus 244 ai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~--s~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 244 ALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFR--SLFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred EEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhc--cccc--CHHHhCCCCEEEEeehhhhccCc
Confidence 3455677 34446555 78999999999964 599999999997662 2211 11122344 2 27899987 5
Q ss_pred CCCcceEEEechH
Q 003472 694 GVIPLAATLATNA 706 (817)
Q Consensus 694 Gy~PlsAvl~s~~ 706 (817)
| +=+|.+++.++
T Consensus 317 G-~RlG~i~~~~~ 328 (527)
T PRK09275 317 G-WRLGVIALHED 328 (527)
T ss_pred H-hHHhhhhcCch
Confidence 6 57777888875
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.19 Score=57.41 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.++|+|. +||||||+++-|+..+. . ++|.+|..+-
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~---~-~~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYF---L-HMGKSVSLYT 259 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCeEEEec
Confidence 46888885 89999999999997552 1 6688887654
No 441
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=95.76 E-value=0.15 Score=61.95 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SG-seA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
+.+..+..+..++.+| .++.+|...| |.+|.+++..+ ..+.+.|.++...|=|.
T Consensus 194 ~G~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv 248 (714)
T PRK15400 194 SGPHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTVLIDRNCHKSL 248 (714)
T ss_pred ChHHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 4456666666667787 5789888878 45555555444 22346788999999999
Q ss_pred cccccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCC-chhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P-~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..++.++|.. .|-.+ -+..+|... ++| .. |.
T Consensus 249 ~haLilsga~PVYl~P----~rn~~Gi~g--------------~I~~~~------------~~----------------- 281 (714)
T PRK15400 249 THLMMMSDVTPIYFRP----TRNAYGILG--------------GIPQSE------------FQ----------------- 281 (714)
T ss_pred HHHHHHcCCeEEEecc----cccccCCcc--------------CCCccc------------cC-----------------
Confidence 9999999853 22211 001111100 000 00 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecccccccc
Q 003472 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (817)
Q Consensus 599 ~~~~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~ 672 (817)
.+.+++.|++... .....++||.-|-. .|+..- ++.|.++|+.++ ++|||++-|.-+....
T Consensus 282 --~e~i~~~i~~~p~--ak~p~~~vit~pTY---dG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 282 --HATIAKRVKETPN--ATWPVHAVITNSTY---DGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred --HHHHHHHHHhCcc--ccCccEEEEECCCC---ccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 1567777764210 01113588888853 456555 789999999888 6899999765455543
No 442
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=95.72 E-value=0.38 Score=54.50 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=48.8
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccccchhhhcCC-CCceeec--ccccCCCC
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGV 695 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gK~LggGy 695 (817)
.+-.+|+=.......|.+-+ +++|.++|++|++.|=+|=...|..-.-+..-.-..|+ ..|=+++ -|-++--
T Consensus 193 ~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P- 267 (373)
T PF00282_consen 193 KTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP- 267 (373)
T ss_dssp EEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-
T ss_pred ccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-
Confidence 33333443432444577766 99999999999999999998866322222222222344 2465543 6777666
Q ss_pred CcceEEEechH
Q 003472 696 IPLAATLATNA 706 (817)
Q Consensus 696 ~PlsAvl~s~~ 706 (817)
++.|.++++.+
T Consensus 268 ~~~~~~l~r~~ 278 (373)
T PF00282_consen 268 YGCGVLLVRDK 278 (373)
T ss_dssp SS-EEEEESSG
T ss_pred ccceeEEeecc
Confidence 58888888875
No 443
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.71 E-value=0.15 Score=52.61 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+++.|. |||||||..+-|+..++ .+|++|...=
T Consensus 2 ~vi~lvGp-tGvGKTTt~aKLAa~~~-----~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGP-TGVGKTTTIAKLAARLK-----LKGKKVALIS 36 (196)
T ss_dssp EEEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred EEEEEECC-CCCchHhHHHHHHHHHh-----hccccceeec
Confidence 46777887 89999999999999995 4488887765
No 444
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.63 E-value=0.085 Score=56.25 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhccccCCCCCCCcCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 11 DHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+..+.+|.+++.|.- +...|=|||+ .|+||||+.-.|.+.|. ++|++|+..-
T Consensus 13 ~~~~~ll~~l~~~~g----------~a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 13 PEARELLKRLYPHTG----------RAHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHHhhcC----------CceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 356678888886632 1247889998 89999999999999995 6799988765
No 445
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.55 E-value=0.035 Score=62.69 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
+|+.+.|+|. +|+||||+...|++.|+ ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 4788999995 99999999999999994 78999999993
No 446
>PLN02452 phosphoserine transaminase
Probab=95.46 E-value=0.89 Score=51.40 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=90.2
Q ss_pred CcEEEeeeeeccccccccchhhhcCCCCceeecccccCCCCCc-ceEEEechHHHhhhcCCCc-cce----eecccCC-C
Q 003472 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP-LAATLATNAVFDSFVGDSK-LKA----LLHGHSY-S 727 (817)
Q Consensus 655 ilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~LggGy~P-lsAvl~s~~i~d~~~~~~~-~~~----~~h~~T~-~ 727 (817)
+++|+|=+++-. +.-.-.+.+|+ |+..--|.+| .| ++.+++++++.+....... ... .-..++| +
T Consensus 171 ~~lvVDa~Ss~g---~~pidv~~~~v--~~~saqK~lG---P~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSNFL---SKPVDVSKYGV--IYAGAQKNVG---PSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcccc---CcccCHHHcCE--EEEecccccC---CCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 899999999632 33444566676 7777788884 34 7889999999876532211 000 0123444 4
Q ss_pred CCHHHHHHHHHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHH-cCCCcc-eEEeeeeEEEEEEecCCCCCCcchHHH
Q 003472 728 AHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS-SHRTVQ-RVVALGTLCAIELQAAGCNAGYCLIEL 805 (817)
Q Consensus 728 gnPla~AAAlA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~-~~p~V~-~VrG~Glm~gIel~~~~~~~~~~~~~~ 805 (817)
.+-.++.+..++|+++++++-.+++.++-+.+.+++.+.+.+... -.+.+. +.| ....+.+.+.+. +....
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~r-s~~~vsF~~~~~------~~~~~ 315 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVR-SLMNVPFTLGGS------ELEAE 315 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHh-CCeEEEEEcCCc------hhHHH
Confidence 455667777799999987533567777777777766654433210 001121 123 234555555443 47889
Q ss_pred HHHHHHHcCCC
Q 003472 806 FLYNFLTTGMH 816 (817)
Q Consensus 806 ~~~~~l~~Gv~ 816 (817)
|+..+.++|+.
T Consensus 316 f~~~~~~~g~~ 326 (365)
T PLN02452 316 FVKEAAKAGMV 326 (365)
T ss_pred HHHHHHHCCCc
Confidence 99999999974
No 447
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.45 Score=51.51 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
..+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 74 ~~~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 74 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 4468888888 99999999999999983 5577777765
No 448
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=95.39 E-value=0.14 Score=58.20 Aligned_cols=142 Identities=10% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeee-ccccccccchhhhcCC
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC 680 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~T-GfGRtG~~~a~e~~gv 680 (817)
+.+++.+++ .+...||+-+- ..+-+.+ ++++|++|++.|++|++|=.|+ |+ -.|..+ -.-+..
T Consensus 159 d~l~~~a~~-------~kPklIi~G~S------~y~~~~d-~~~~reIad~vga~l~~D~sH~~GL-Ia~g~~-~~P~~~ 222 (399)
T PF00464_consen 159 DELEKLAKE-------HKPKLIICGAS------SYPRPID-FKRFREIADEVGAYLMADISHIAGL-IAGGLF-PNPFPY 222 (399)
T ss_dssp HHHHHHHHH-------H--SEEEEE-S------STSS----HHHHHHHHHHTT-EEEEE-TTTHHH-HHTTSS---GCCT
T ss_pred HHHHHHHhh-------cCCCEEEECch------hccCccC-HHHHHHHHHhcCcEEEecccccccc-eehhee-cCcccc
Confidence 556666664 13345666553 1222333 5999999999999999999996 44 222222 122332
Q ss_pred CCcee--ecccccCCCCCcceEEEec--------------hHHHhhhcCCCccceeecccCCCCCHHHHHHHH-HHHHHh
Q 003472 681 VPDIA--CYGKLLTGGVIPLAATLAT--------------NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAA-KSIKWF 743 (817)
Q Consensus 681 ~PDiv--tlgK~LggGy~PlsAvl~s--------------~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAl-A~L~~l 743 (817)
.|++ +.-|.|.|= .-|.++++ +++.+.+... .+....+++-..-.||+ .+|...
T Consensus 223 -ADvvt~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a------vfP~~qg~~h~~~iaalAval~ea 293 (399)
T PF00464_consen 223 -ADVVTGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSA------VFPGLQGGPHMHRIAALAVALKEA 293 (399)
T ss_dssp -SSEEEEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH------HTTTT-SS--HHHHHHHHHHHHHH
T ss_pred -ceEEEeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccc------cCCCcccCcchhHHHHHHHHHhcc
Confidence 6998 457999861 12346677 6777666432 12222233222222222 233333
Q ss_pred cC---cCchhcHHHHHHHHHHHHHHHHH
Q 003472 744 KD---PQTNHNIIPERRILRELWDLELI 768 (817)
Q Consensus 744 ~~---~~l~~~l~~~~~~lg~~l~~~l~ 768 (817)
.+ .++..++.+|++.|.+.|.+...
T Consensus 294 ~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 294 LSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 33 35668888999998886665433
No 449
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.37 E-value=0.056 Score=64.84 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (817)
++|+.|-|.|. +|+||||+...|+..|+ ++|+||+..|=
T Consensus 8 ~~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh 46 (597)
T PRK14491 8 LSIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKH 46 (597)
T ss_pred CCccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEc
Confidence 45789999997 99999999999999994 88999999994
No 450
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.3 Score=59.73 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhC----CCCEEEEEcCCCCh--HHHHHHHHHHHHhC-CCcEEEEEEccCCCC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLGG--ISGTISAYESLKLR-GYDVVAVVFEDHGLV 292 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l----~~pvilV~~~~~g~--i~~~~~~~~~l~~~-~~~v~gvi~n~~~~~ 292 (817)
++|+|||.++| .++.+. ..+-++.+.. ...++||.+.-.+. ++.++ +.++.. +.++-|+||.|++..
T Consensus 263 ~~D~VLIDTAG--Rs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVG--MSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCC--CCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCCCCEEEEeccCCC
Confidence 38999999999 344322 2333333322 23489999865432 33333 334322 346889999998432
Q ss_pred -C---HHHHHHhhcCCCcEEecC
Q 003472 293 -N---EVPLMSYLRNRVPVLVLP 311 (817)
Q Consensus 293 -~---~~~l~~~~~~~~pvlgiP 311 (817)
. .-.+...+ ++|+.-|-
T Consensus 337 ~~~G~iL~i~~~~--~lPI~yit 357 (767)
T PRK14723 337 THLGPALDTVIRH--RLPVHYVS 357 (767)
T ss_pred CCccHHHHHHHHH--CCCeEEEe
Confidence 2 22233444 78876643
No 451
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.61 Score=52.11 Aligned_cols=67 Identities=19% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCCCCCCCchhhHhhhCCC-CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL-PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 220 ~~d~vivEGagg~~~p~~~~~~~~~la~~l~~-pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
.+|++||.++|-.---..--.-..++++.++- .||+|.|...|- +.......-..-+.|-+||+.+.
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEec
Confidence 49999999988321110000234677777763 389999976553 33322222234578999999997
No 452
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.17 E-value=0.021 Score=60.52 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
||.|.|.|+-.||||||+|+.|+.+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999994 8899988765
No 453
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.4 Score=52.35 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.||+.-+||=|.+.-|-++++ .+|+++.+.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 579999999999999999999999995 8899998865
No 454
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.93 E-value=0.51 Score=46.16 Aligned_cols=62 Identities=19% Similarity=0.020 Sum_probs=46.6
Q ss_pred CchhhHhhhCCCCEEEEEc-CCCC-hHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhc
Q 003472 240 SLQCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (817)
Q Consensus 240 ~~~~~la~~l~~pvilV~~-~~~g-~i~~~~~~~~~l~~~~~~v~gvi~n~~~~~~~~~l~~~~~ 302 (817)
...-.+++.++.|||=|+. .++- .-...-.+.+.|+..|.+=. +.++-+..+..+.|++|++
T Consensus 79 ~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 79 VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 3445677888999998777 6665 34555567788888898644 7777778889999999874
No 455
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.91 E-value=0.029 Score=54.60 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccccc
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~ 82 (817)
|.++|.|. +++||||++..|+..|+ ++|++|+++|=...
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-ST
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccC
Confidence 57899997 79999999999999995 89999999996544
No 456
>PRK13578 ornithine decarboxylase; Provisional
Probab=94.81 E-value=0.17 Score=61.48 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHhhcCCCCcceEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCc
Q 003472 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (817)
Q Consensus 442 ~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA-~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t 520 (817)
..+..+..+..++.+| .++.+|...||.+ |.+++..+ ..+.+.|.++...|=+.
T Consensus 173 eG~i~eAq~~AA~~fg---Ad~tyFlvNGTS~gn~a~i~a~----------------------~~~Gd~VLvdRN~HKSv 227 (720)
T PRK13578 173 EGAAKDAQKHAAKVFN---ADKTYFVLNGTSASNKVVTNAL----------------------LTPGDLVLFDRNNHKSN 227 (720)
T ss_pred ChHHHHHHHHHHHHhC---CCceEEEeCChhHHHHHHHHHh----------------------cCCCCEEEeecccHHHH
Confidence 3455566666666788 5788887666654 44444433 22346788999999998
Q ss_pred ccc-ccccCCC-CCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHH
Q 003472 521 LGA-MEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (817)
Q Consensus 521 ~ga-lslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~ 598 (817)
..+ +-++|.. .|-.+ -+..+|... +++ . ++..
T Consensus 228 ~hgaLiLsGa~PVYl~P----~~n~~Gi~g--------------~I~--------------~-------------~~~~- 261 (720)
T PRK13578 228 HHGALIQAGATPVYLET----ARNPFGFIG--------------GID--------------A-------------HCFD- 261 (720)
T ss_pred HHHHHHHcCCeEEEeec----cccccCCcC--------------CCC--------------h-------------HHcc-
Confidence 864 8888742 22211 000111100 000 0 0000
Q ss_pred HHHHHHHHHHhcCC-CC--CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHH-HhhcCCcEEEeeeeecccccccc--
Q 003472 599 IYSSYISQNLLQNP-GL--KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVE-- 672 (817)
Q Consensus 599 ~~~~~Le~~L~~~~-~~--~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~L-c~~~GilLI~DEV~TGfGRtG~~-- 672 (817)
.+.+++.|++.. .+ ....--++||.-|-. .|+..- ++.|.++ |+.++ .|+|||++-|.-+....
T Consensus 262 --~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY---dG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~ 331 (720)
T PRK13578 262 --EEYLREQIREVAPERADEARPFRLAVIQLGTY---DGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMA 331 (720)
T ss_pred --HHHHHHHHHhcCccccccccCceEEEEECCCC---cceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccc
Confidence 145666666420 00 001124677777753 456665 7888887 78888 99999999766555553
Q ss_pred -chhhhcCCCCc----eeec--ccccCC
Q 003472 673 -TTADLLGCVPD----IACY--GKLLTG 693 (817)
Q Consensus 673 -~a~e~~gv~PD----ivtl--gK~Lgg 693 (817)
+--.....-|| ++|- =|-|++
T Consensus 332 ~~p~~al~~GaD~p~i~v~QStHKtL~a 359 (720)
T PRK13578 332 DCSPLLLELNENDPGIFVTQSVHKQQAG 359 (720)
T ss_pred cCChhhhhcCCCCCCeEEEEChhhcchh
Confidence 11112334566 6543 455553
No 457
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.59 E-value=0.04 Score=54.89 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv 80 (817)
+|+.|.|+|. +++||||+.--|++.|+ .+|++|+..|=-
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEec
Confidence 4789999998 89999999999999994 899999999943
No 458
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.54 E-value=0.18 Score=54.92 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-C-CceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~-g-~~v~~~K 78 (817)
..+.+.|.|. |||||||+++.|+..+. .+ | ++|.++.
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 4568889997 89999999999999984 33 4 8898887
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.6 Score=51.51 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.-.+++.|. .|+||||..+-|++.|+ ++|++|..--
T Consensus 139 p~Vil~vGV-NG~GKTTTIaKLA~~l~-----~~g~~VllaA 174 (340)
T COG0552 139 PFVILFVGV-NGVGKTTTIAKLAKYLK-----QQGKSVLLAA 174 (340)
T ss_pred cEEEEEEec-CCCchHhHHHHHHHHHH-----HCCCeEEEEe
Confidence 567889999 59999999999999995 8899988654
No 460
>PLN02724 Molybdenum cofactor sulfurase
Probab=94.34 E-value=3.2 Score=51.90 Aligned_cols=164 Identities=13% Similarity=0.046 Sum_probs=91.1
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhh---c-----CCcEEEeeeeeccccccccchhhhcCCCCceeec--c
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN---R-----KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--G 688 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~---~-----GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--g 688 (817)
++..|.+--+ ....|.+.| ++.+.++++. + ++++++|=+|+ +|.. . .+.-.+.+|++++ =
T Consensus 192 ~t~LVa~~~v-sN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-p---iDv~~~~~Dfl~~S~H 261 (805)
T PLN02724 192 AYNLFAFPSE-CNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-P---PDLSRYPADFVVVSFY 261 (805)
T ss_pred CcceEEEEcc-ccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-C---CChhhcCCCEEEEecc
Confidence 3445666665 677889887 5555544443 2 36899999994 4321 1 1222346899866 3
Q ss_pred cccCCCCCcceEEEechHHHhhhcCC---Cccceeeccc-CC--------------CCCHHHHHHHHHHHHHhcCcCchh
Q 003472 689 KLLTGGVIPLAATLATNAVFDSFVGD---SKLKALLHGH-SY--------------SAHALGCAAAAKSIKWFKDPQTNH 750 (817)
Q Consensus 689 K~LggGy~PlsAvl~s~~i~d~~~~~---~~~~~~~h~~-T~--------------~gnPla~AAAlA~L~~l~~~~l~~ 750 (817)
|-+| |=.-+|++.++++..+.+... .......... .| +-|.+++++..++|+++++-+ .+
T Consensus 262 K~~G-gP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig-~~ 339 (805)
T PLN02724 262 KIFG-YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLT-IS 339 (805)
T ss_pred eecc-CCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhC-hH
Confidence 6554 201268899999887655321 0000000000 01 246778888888999986633 25
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHc--CCCc---ce------EEeeeeEEEEEEecC
Q 003472 751 NIIPERRILRELWDLELIQQISS--HRTV---QR------VVALGTLCAIELQAA 794 (817)
Q Consensus 751 ~l~~~~~~lg~~l~~~l~~~l~~--~p~V---~~------VrG~Glm~gIel~~~ 794 (817)
++.++...|.++|.+.|.++-.. .|.| +. ...+|-++++.+...
T Consensus 340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~ 394 (805)
T PLN02724 340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRA 394 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcC
Confidence 66677777777766655433110 1111 11 123567888888654
No 461
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.19 E-value=0.046 Score=60.37 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 35 ~~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+..|+|-|+||.|++|||+||..++|.|+ .+|+||+...
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~-----ergyrv~vVr 162 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLR-----ERGYRVCVVR 162 (449)
T ss_pred hcCceEEEEEeccccchhHHHHHHHHHHH-----HcCCceEEEe
Confidence 45789999999999999999999999994 8899999887
No 462
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.17 E-value=1.3 Score=47.19 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
++.++|.+.-.|||||++++.|+.+|. ++|++|..+-
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 467889999999999999999999994 7788887654
No 463
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.03 E-value=0.069 Score=46.71 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.|+|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999994 7799999998
No 464
>PRK05636 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.48 Score=55.80 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.+..+|+|||++++-+++... . +.|++|.+|=
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a---~-~~g~~v~~fS 301 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSAS---I-KHNKASVIFS 301 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 3467888899999999999999988653 2 5688999884
No 465
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=93.82 E-value=2.7 Score=47.38 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCcEE-EEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeecc--ccccccchhhhc---CCCCce----ee
Q 003472 617 SGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLL---GCVPDI----AC 686 (817)
Q Consensus 617 ~~~iA-AvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGf--GRtG~~~a~e~~---gv~PDi----vt 686 (817)
+-+|. .+|+-| +.--|... +++-+..|...+.++++.+|+|||..|- +..+-....+.. ...||- ..
T Consensus 224 ~~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivys 300 (471)
T KOG0256|consen 224 GLKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYS 300 (471)
T ss_pred CCceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEE
Confidence 34565 556665 34446655 7888999999999999999999999763 322111122211 226774 37
Q ss_pred cccccC-CCCCcceEEEec-hHHHhhhcCCCccceeecccCCCCCHHHHHHHHHHHHHhcCcCch-hcHHHHHHHHHHHH
Q 003472 687 YGKLLT-GGVIPLAATLAT-NAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN-HNIIPERRILRELW 763 (817)
Q Consensus 687 lgK~Lg-gGy~PlsAvl~s-~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~~~l~-~~l~~~~~~lg~~l 763 (817)
++|=+| -| +-.|++-.. +++..+... -+.|+. ++.-.-.-....+.++.+. .-+.++..+++.+-
T Consensus 301 lSKD~GlpG-fRvGviYS~ne~VvsaA~k---------mssf~~--vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh 368 (471)
T KOG0256|consen 301 LSKDFGLPG-FRVGVIYSNNEDVVSAATK---------MSSFGL--VSSQTQYLLASLLSDEEFTREYLRENNKRLRIRH 368 (471)
T ss_pred eccccCCCc-eEEEEEEecChHHHHHHHH---------HhhccC--CcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 899888 47 566666644 344443321 122221 1111111112234343332 22444555554433
Q ss_pred HHHHHHHHHcCCCcceEEeeeeEEEEEEecCCCCCCcchHHHHHHHHHHc
Q 003472 764 DLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTT 813 (817)
Q Consensus 764 ~~~l~~~l~~~p~V~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~ 813 (817)
+ .+.+-+++..+.---++-|++.-++|.+--...+++.--.+..+.+++
T Consensus 369 ~-~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~ 417 (471)
T KOG0256|consen 369 R-YIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDN 417 (471)
T ss_pred H-HHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHh
Confidence 2 234445555555556889999999997653234444433444444443
No 466
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=93.77 E-value=6.4 Score=44.85 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=119.6
Q ss_pred HHHHHHHhcCCCC-CCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeeeeccccccc---------
Q 003472 602 SYISQNLLQNPGL-KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--------- 671 (817)
Q Consensus 602 ~~Le~~L~~~~~~-~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~TGfGRtG~--------- 671 (817)
+.|++.++..... .+..+.-.+-.=|-.|.--|... +.+--++|.+|+++|++++|-||+. +|=..+.
T Consensus 185 E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpY-y~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 185 ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPY-YFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCcc-ceeeccccCCCccccC
Confidence 4566666543111 11122334444565455567766 7888999999999999999999997 4433332
Q ss_pred ------cchhhh------cCCCCcee---ecccccCCCCCcceEEEechHHHhhhcCCCccceeecccCCCCCHHHHHHH
Q 003472 672 ------ETTADL------LGCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAA 736 (817)
Q Consensus 672 ------~~a~e~------~gv~PDiv---tlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~~~~h~~T~~gnPla~AAA 736 (817)
.|.-+. .+..--++ +|+|-++-| +=+|-+.+.+-..+.....+ -..|-+.+-++-...
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~~a------e~~t~~pSg~sq~iv 335 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILDLA------EVATSGPSGFSQGIV 335 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhhhc------ceeecCcccccHHHH
Confidence 111110 12222233 899999999 89999999997777664432 223444455666777
Q ss_pred HHHHHHhcCcCchhcHHHHHHHHHHHHHHHHHHHHHc-CCC---cceEEeeeeEEEEEEecCCC--CCCc-chHHHHHHH
Q 003472 737 AKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISS-HRT---VQRVVALGTLCAIELQAAGC--NAGY-CLIELFLYN 809 (817)
Q Consensus 737 lA~L~~l~~~~l~~~l~~~~~~lg~~l~~~l~~~l~~-~p~---V~~VrG~Glm~gIel~~~~~--~~~~-~~~~~~~~~ 809 (817)
-+.|+..-++++.+-+.+....--++ +..+...+.+ .|. ...+---|+++-|++.-... ..+. +..+.+...
T Consensus 336 ~a~l~~wgqeG~~~wi~~l~~~Yt~R-rn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~ 414 (472)
T KOG0634|consen 336 YAMLKRWGQEGFLRWIQHLRSSYTER-RNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIK 414 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHH
Confidence 77887776655544443332221111 1223334433 342 22345579999999961111 1223 466677778
Q ss_pred HHHcCCC
Q 003472 810 FLTTGMH 816 (817)
Q Consensus 810 ~l~~Gv~ 816 (817)
+.++||.
T Consensus 415 ~vk~gV~ 421 (472)
T KOG0634|consen 415 AVKNGVK 421 (472)
T ss_pred HHHCCeE
Confidence 8889985
No 467
>PRK05367 glycine dehydrogenase; Provisional
Probab=93.49 E-value=4.2 Score=51.66 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=48.3
Q ss_pred cEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeeee---eccccccccchhhhcCCCCceee-----cccc
Q 003472 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF---TGFWRLGVETTADLLGCVPDIAC-----YGKL 690 (817)
Q Consensus 619 ~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV~---TGfGRtG~~~a~e~~gv~PDivt-----lgK~ 690 (817)
+++++++ .+ .+..|.+.+ +++|.++|+++|+++++|=.+ +.+=+-|.+ -.||++ +|=.
T Consensus 206 ~~~~vlv-q~-p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~--------GaDi~vgs~qkfg~P 271 (954)
T PRK05367 206 DVFGVLL-QY-PGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLLTPPGEM--------GADIAVGSAQRFGVP 271 (954)
T ss_pred cEEEEEE-ec-CCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCCCChhhc--------CCCEEEeeCcccCCC
Confidence 5655544 33 456788876 999999999999999999744 322222222 236653 3323
Q ss_pred cCCCCCc-ceEEEechHHHhhhc
Q 003472 691 LTGGVIP-LAATLATNAVFDSFV 712 (817)
Q Consensus 691 LggGy~P-lsAvl~s~~i~d~~~ 712 (817)
+|.| -| .|.+.+++++.+.+.
T Consensus 272 ~g~G-GP~aGflavr~~~~r~lp 293 (954)
T PRK05367 272 MGFG-GPHAAYFAVRDAYKRSMP 293 (954)
T ss_pred CCCC-CCCEEEEEECHHHHhhCC
Confidence 3433 24 455667777766653
No 468
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=93.49 E-value=2.5 Score=49.94 Aligned_cols=275 Identities=13% Similarity=0.029 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHhhcCCCCcceEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccccceEEEEEcCCccCCcc
Q 003472 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (817)
Q Consensus 443 ~~~~eLae~L~~~~~~~~~~~v~f-~~SGseA~E~AlklA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~ 521 (817)
....+|++.|++++| ++.+.| -|||+..--+.|+.. |.|...+|. +...|....-|-||.--
T Consensus 582 ~lf~~Le~~Lc~iTG---~D~~s~QPNsGA~GEYaGL~~I-RaY~~~kge-------------~hRnvClIPvSAHGTNP 644 (1001)
T KOG2040|consen 582 QLFTELEKDLCEITG---FDSFSLQPNSGAQGEYAGLRVI-RAYLESKGE-------------GHRNVCLIPVSAHGTNP 644 (1001)
T ss_pred HHHHHHHHHhheeec---ccceeecCCCCcccchhhHHHH-HHHHHhccC-------------CcceeEEEeecccCCCh
Confidence 445689999999998 677766 789998888888888 888777654 34467778889999765
Q ss_pred ccccccCCCCCCCcCCCCCccCCccccCCCcccccCcceeecCCchhhhcccccccccccCcchhhhhccCchhHHHHHH
Q 003472 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (817)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~d~~~~d~~~~~~~~~~~~~~~~~~~ 601 (817)
.+.++.|-.. +|.- +. -+.++| .
T Consensus 645 ASA~Magmkv------------------------------vpV~-~~----------~~G~id----------------~ 667 (1001)
T KOG2040|consen 645 ASAAMAGMKV------------------------------VPVG-CD----------ANGNID----------------M 667 (1001)
T ss_pred hhHHhcCCEE------------------------------EEee-cc----------CCCCcc----------------H
Confidence 5544443211 1100 00 012221 1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCCcccCCHHHHHHHHHHHhhcCCcEEEeee----eeccccccccch-hh
Q 003472 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVETT-AD 676 (817)
Q Consensus 602 ~~Le~~L~~~~~~~~~~~iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~~GilLI~DEV----~TGfGRtG~~~a-~e 676 (817)
..|+..-+ ++.++.||++|-= -+.-|+..+ -.+.+.++.++||.-+.+|-+ |.|+.|-|..++ ..
T Consensus 668 ~dLk~kae-----kh~~~Laa~MvTY--PST~GvfE~---~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~ 737 (1001)
T KOG2040|consen 668 VDLKAKAE-----KHKDNLAALMVTY--PSTHGVFEE---GIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVC 737 (1001)
T ss_pred HHHHHHHH-----HhhhhhheeEEec--ccccccccc---cHHHHHHHHHhcCCEEEecCCCccceecccCCccccccce
Confidence 34444444 4567888877753 244555443 367778888999999999975 779888887554 23
Q ss_pred hcCCCCceeecccccCCCCCcceEEEechHHHhhhcCCCccc--------ee-ecccCCCCCHHHHHHHHHHHHHhcCcC
Q 003472 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLK--------AL-LHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 677 ~~gv~PDivtlgK~LggGy~PlsAvl~s~~i~d~~~~~~~~~--------~~-~h~~T~~gnPla~AAAlA~L~~l~~~~ 747 (817)
|+++.- ||.=.=|||=--+|-+.+++.++..+.++.-.. ++ ..++.=.|+.+-.....|-++.|-..+
T Consensus 738 HLNLHK---TFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G 814 (1001)
T KOG2040|consen 738 HLNLHK---TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG 814 (1001)
T ss_pred eecccc---eeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc
Confidence 444432 222222332122344567888877776542110 00 111122345555566778888886655
Q ss_pred chhc---HHHHHHHHHHHHHHHHHHHHHcCCCc-ceEEeeeeEEEEEEecCCCCCCc-----chHHHHHHHHHHcCCC
Q 003472 748 TNHN---IIPERRILRELWDLELIQQISSHRTV-QRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 l~~~---l~~~~~~lg~~l~~~l~~~l~~~p~V-~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~Gv~ 816 (817)
+.+. ..-+++++.. +| -..|+++ .+.+| ..+-||.-| .+.| -...-..+++++.|+|
T Consensus 815 L~~as~~AiLNaNYMak----RL---e~hYkil~~~~~~---~vaHEFIlD--~r~fK~~agieavDvAKRL~DYgFH 880 (1001)
T KOG2040|consen 815 LKDASKIAILNANYMAK----RL---ESHYKILFRGENG---LVAHEFILD--LRPFKKTAGIEAVDVAKRLMDYGFH 880 (1001)
T ss_pred cchhhHHHhhhhHHHHH----HH---hhccceeEecCCc---ceeeeeeee--chhhccccCCcHHHHHHHHHhccCC
Confidence 5433 1223333332 22 1244543 23333 667777554 2333 3445677888898887
No 469
>PRK05595 replicative DNA helicase; Provisional
Probab=93.37 E-value=0.57 Score=54.40 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.|..+|+|||++++-++..+. . ++|.+|.+|=
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a---~-~~g~~vl~fS 237 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAA---L-REGKSVAIFS 237 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHH---H-HcCCcEEEEe
Confidence 3467889999999999999999998642 1 5699999995
No 470
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.35 E-value=0.51 Score=46.29 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 40 ~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
+.+.|. .|+|||+++..|...+. ++|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 456666 79999999999999994 7788888776
No 471
>PHA02542 41 41 helicase; Provisional
Probab=93.30 E-value=0.86 Score=53.29 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++.... +.|++|.+|=
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fS 225 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYIS 225 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 457899999999999999999998873 6799999995
No 472
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=93.29 E-value=0.21 Score=55.13 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
-|+++|.|. +++||||+|..|+.+.. |+|+++.|.-
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 103 GPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred CCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 478999997 89999999999999985 7899888876
No 473
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.26 E-value=2.2 Score=48.41 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g-~~v~~~K 78 (817)
....+.+.|. ||+||||+.+.|+..+. . +.| .+|.++-
T Consensus 136 ~g~ii~lvGp-tGvGKTTtiakLA~~~~---~-~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGP-TGVGKTTTTAKLAARCV---M-RFGASKVALLT 174 (374)
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCCeEEEEe
Confidence 3467788887 89999999999998763 2 445 5676654
No 474
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=93.26 E-value=4.5 Score=45.73 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHhhcCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC-CCCcceEEEechHHHhhhcCCCc-cce----e
Q 003472 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG-GVIPLAATLATNAVFDSFVGDSK-LKA----L 720 (817)
Q Consensus 649 Lc~~~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg-Gy~PlsAvl~s~~i~d~~~~~~~-~~~----~ 720 (817)
+.+.+++++|+|=+=+ + .+.-+-.+.| |++.. =|+||- | ++.++++++..+....... ... .
T Consensus 163 ~~~~~~~llvvD~sS~-~--~s~pid~~~~----dvi~agsQKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~ 232 (364)
T PRK12462 163 AAGLPDSPLIADMSSD-F--MSRPFDVEAY----GMVYAHAQKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHV 232 (364)
T ss_pred ccccCCCeEEEEcCch-h--hCCCCChHHc----cEEEeeccccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHH
Confidence 3444799999998764 4 2333444444 77754 488873 5 5778899998876543110 000 0
Q ss_pred ecccCCC-CCHHHHHHHHHHHHHhcCc-CchhcHHHHHHHHHHHHHHHHHHHHHcCCCcceEEeeeeE-EEEEEecCCCC
Q 003472 721 LHGHSYS-AHALGCAAAAKSIKWFKDP-QTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTL-CAIELQAAGCN 797 (817)
Q Consensus 721 ~h~~T~~-gnPla~AAAlA~L~~l~~~-~l~~~l~~~~~~lg~~l~~~l~~~l~~~p~V~~VrG~Glm-~gIel~~~~~~ 797 (817)
-..+||. -+-...-+...+|++|.++ +-.+++.++.++..+.+.+.+.+.-.=+..+.+-.-+-.| +.+.+.++
T Consensus 233 ~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~--- 309 (364)
T PRK12462 233 EHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP--- 309 (364)
T ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH---
Confidence 0235654 3445556677899999776 3346677777777775555332221012223333333333 22333333
Q ss_pred CCcchHHHHHHHHHHcCCC
Q 003472 798 AGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 798 ~~~~~~~~~~~~~l~~Gv~ 816 (817)
+....|+..+.++|+.
T Consensus 310 ---~l~~~f~~~a~~~gl~ 325 (364)
T PRK12462 310 ---RLDTLFKEQSTEAGFC 325 (364)
T ss_pred ---HHHHHHHHHHHHCCCc
Confidence 6889999999999985
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=93.18 E-value=0.75 Score=53.86 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a---~-~~g~~V~~fS 265 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAA---I-KSKKGVAVFS 265 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHH---H-hcCCceEEEe
Confidence 467889999999999999999998663 2 5588999995
No 476
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=93.09 E-value=3.7 Score=46.65 Aligned_cols=174 Identities=10% Similarity=0.101 Sum_probs=92.4
Q ss_pred EEEEEEccccccCCCcccCCHHHHHHHHHHHhh-cCCcEEEeeeeeccccccccchhhhcCCCCceeec--ccccCC--C
Q 003472 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--G 694 (817)
Q Consensus 620 iAAvIvEPV~qg~gG~~~pp~~yl~~Lr~Lc~~-~GilLI~DEV~TGfGRtG~~~a~e~~gv~PDivtl--gK~Lgg--G 694 (817)
+..+-.|.. .|+..| + .+++++ +++++|+|=|=+ +| |.-+-.+ .-|+++. -|+|++ |
T Consensus 131 v~~vhnETS----TGv~np----v---~~i~~~~~~~lliVDavSs-~g--~~~l~~d----~iDv~~tgsQK~L~~ppG 192 (374)
T TIGR01365 131 VVFTWNGTT----SGVRVP----N---GDFIPADREGLTICDATSA-AF--AQDLDYH----KLDVVTFSWQKVLGGEGA 192 (374)
T ss_pred EEEecCCCc----hheecc----c---cccccccCCCcEEEEccch-hc--CCCCChh----HCcEEEEechhccCCCCc
Confidence 555555653 456655 2 344444 589999998764 53 3333333 2687754 599986 6
Q ss_pred CCcceEEEechHHHhhhcCCCcc----c--e----------eecccCCCC-CHHHHHHHHHHHHHhcCcCchhcHHHHHH
Q 003472 695 VIPLAATLATNAVFDSFVGDSKL----K--A----------LLHGHSYSA-HALGCAAAAKSIKWFKDPQTNHNIIPERR 757 (817)
Q Consensus 695 y~PlsAvl~s~~i~d~~~~~~~~----~--~----------~~h~~T~~g-nPla~AAAlA~L~~l~~~~l~~~l~~~~~ 757 (817)
+|.++.+++..+........ . . ...++|..- +-.+.-+++.+|+++++++-.++..++-+
T Consensus 193 ---ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~ 269 (374)
T TIGR01365 193 ---HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARAD 269 (374)
T ss_pred ---eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 57788999988765421100 0 0 001234333 33444556677777766533466667777
Q ss_pred HHHHHHHHHHHHHHHcCCCcc--eEEeeeeEEEEEEecCCC-----CCCcchHHHHHHHHHHcCC
Q 003472 758 ILRELWDLELIQQISSHRTVQ--RVVALGTLCAIELQAAGC-----NAGYCLIELFLYNFLTTGM 815 (817)
Q Consensus 758 ~lg~~l~~~l~~~l~~~p~V~--~VrG~Glm~gIel~~~~~-----~~~~~~~~~~~~~~l~~Gv 815 (817)
++.+.+++.+.++---..... ..|. -.+.++.+..++- +..++....|...+.++||
T Consensus 270 ~~a~~l~~~l~~lg~l~~~~~~~~~rS-~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 333 (374)
T TIGR01365 270 DNLAVLEAFVAKNNWIHFLAETPEIRS-NTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGV 333 (374)
T ss_pred HHHHHHHHHHHHCCCcccCCCChhhcC-CCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCE
Confidence 777766654433210112221 2343 3334555533210 1122335667777778885
No 477
>PRK08506 replicative DNA helicase; Provisional
Probab=93.01 E-value=1.2 Score=52.07 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++|.|..+|+|||++++-++.... ++|.+|.+|=
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 467999999999999999999998874 6799999994
No 478
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.99 E-value=0.98 Score=52.14 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a---~-~~g~~vl~~S 231 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAA---I-KEGKPVAFFS 231 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 456889999999999999999987753 2 4688999995
No 479
>PRK08006 replicative DNA helicase; Provisional
Probab=92.84 E-value=0.76 Score=53.72 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....+.|.|..+++|||++++-++.... . ++|++|.+|= .+.+..+.+.+..
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a---~-~~g~~V~~fS------lEM~~~ql~~Rll 273 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAA---M-LQDKPVLIFS------LEMPGEQIMMRML 273 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCeEEEEe------ccCCHHHHHHHHH
Confidence 4578999999999999999999987763 2 5688999995 2334445555554
No 480
>PRK09165 replicative DNA helicase; Provisional
Probab=92.68 E-value=1 Score=52.98 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhccCcccccccccCCCCEEEEeCCCCCCCCCC---CC---------CchhhHhhhCCCCEEEEEc
Q 003472 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD 258 (817)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagg~~~p~~---~~---------~~~~~la~~l~~pvilV~~ 258 (817)
.++..+|+..++++.++ .+.|+|||---+-+..+.. .. ...-.+|+.+++|||+++.
T Consensus 323 ~~ti~~i~~~ir~l~~~-----------~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 323 ALSISQLRARARRLKRQ-----------HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQ 391 (497)
T ss_pred CCCHHHHHHHHHHHHHh-----------cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 46778888888876544 3478999988765544432 11 1225678889999999887
Q ss_pred CCCC
Q 003472 259 GRLG 262 (817)
Q Consensus 259 ~~~g 262 (817)
-.++
T Consensus 392 LnR~ 395 (497)
T PRK09165 392 LSRQ 395 (497)
T ss_pred ccch
Confidence 5443
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.67 E-value=3 Score=48.81 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeEE
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVYL 77 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g-~~v~~~ 77 (817)
...+.+.|. +||||||..+.|+..+. . ++| ++|...
T Consensus 256 g~Vi~LvGp-nGvGKTTTiaKLA~~~~---~-~~G~~kV~LI 292 (484)
T PRK06995 256 GGVFALMGP-TGVGKTTTTAKLAARCV---M-RHGASKVALL 292 (484)
T ss_pred CcEEEEECC-CCccHHHHHHHHHHHHH---H-hcCCCeEEEE
Confidence 368889998 89999999999998884 2 445 467643
No 482
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.43 E-value=5.2 Score=41.23 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+.|+|. .|+||||+...|++.+ ..+.+++..+
T Consensus 22 ~~~i~~~G~-~gsGKTTli~~l~~~~------~~~~~v~v~~ 56 (207)
T TIGR00073 22 LVVLNFMSS-PGSGKTTLIEKLIDNL------KDEVKIAVIE 56 (207)
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHH------hcCCeEEEEE
Confidence 568888887 8999999999999987 4467899888
No 483
>PRK06904 replicative DNA helicase; Validated
Probab=92.38 E-value=1.2 Score=52.13 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....++|.|..+|+|||++++-+++... . +.|..|.+|= .+.+..+.+.+..
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a---~-~~g~~Vl~fS------lEMs~~ql~~Rll 270 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAA---M-ASEKPVLVFS------LEMPAEQIMMRML 270 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHH---H-hcCCeEEEEe------ccCCHHHHHHHHH
Confidence 4567999999999999999999988663 1 4688999985 2344445555544
No 484
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.38 E-value=1.1 Score=50.93 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCCCCCCCchhhHhhh----CCCCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCCC---
Q 003472 221 EILCIVETAGGVASPGPSGSLQCDLYRP----FRLPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHGL--- 291 (817)
Q Consensus 221 ~d~vivEGagg~~~p~~~~~~~~~la~~----l~~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~n~~~~--- 291 (817)
+|+|+|.++| .++.+. ....++... ..+.+.||.+...- .+-++ ++.+ +-+++.|+||.+.++
T Consensus 282 ~d~ILVDTaG--rs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei---~~~f--~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAG--RSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI---IKQF--SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCC--CCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHH---HHHh--ccCCcceeEEEcccccCc
Confidence 8999999999 344321 222222222 46678888884321 12222 2222 346899999999833
Q ss_pred -CCHHHHHHhhcCCCcEEec
Q 003472 292 -VNEVPLMSYLRNRVPVLVL 310 (817)
Q Consensus 292 -~~~~~l~~~~~~~~pvlgi 310 (817)
.+.-.+.... ++||.-+
T Consensus 354 ~G~~~s~~~e~--~~PV~Yv 371 (407)
T COG1419 354 LGNLFSLMYET--RLPVSYV 371 (407)
T ss_pred hhHHHHHHHHh--CCCeEEE
Confidence 3444455555 7887543
No 485
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.96 E-value=2 Score=49.50 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a---~-~~g~~v~~fS 230 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVA---L-REGKPVLFFS 230 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 3567899999999999999999997662 2 5689999995
No 486
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.91 E-value=0.19 Score=50.96 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.+.+++.|. +|+|||.++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 468999996 89999999999999885 7899999998
No 487
>PRK06749 replicative DNA helicase; Provisional
Probab=91.83 E-value=1.6 Score=50.53 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
...+.|.|..+++|||++++-+++... ++|++|.+|= .+.+..+.+.+..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a-----~~g~~v~~fS------lEMs~~ql~~R~l 234 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAA-----KSGAAVGLFS------LEMSSKQLLKRMA 234 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHH-----hcCCCEEEEE------eeCCHHHHHHHHH
Confidence 467999999999999999999998884 6688999994 2334445555543
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.08 E-value=0.24 Score=54.52 Aligned_cols=38 Identities=32% Similarity=0.175 Sum_probs=34.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 003472 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (817)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~n~~ 289 (817)
-+++|+....-.+..+--.++.|+..|+++.+||+|++
T Consensus 209 ~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrv 246 (305)
T PF02374_consen 209 SFRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRV 246 (305)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred EEEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEcc
Confidence 47999999999999999999999999999999999998
No 489
>PRK05748 replicative DNA helicase; Provisional
Probab=91.06 E-value=2.3 Score=49.45 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
....+.|.|..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a---~-~~g~~v~~fS 239 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVA---T-KTDKNVAIFS 239 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 3457889999999999999999988753 2 5689999984
No 490
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=91.00 E-value=14 Score=47.02 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCC-----CCChHHHHHHHHHHhhcCCCCcceEEEeCChHHHHHHHHHH
Q 003472 412 GPDATLQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480 (817)
Q Consensus 412 ~LGh~~hP~V~~Ai~~q~~~~~~~~~~~-----~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseA~E~Alkl 480 (817)
+.+|-.++.|.+++.+..+-+..++... +.-+...++-..+++++|-. ...+.+..+++.+.|+++..
T Consensus 112 ~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~-~anaSL~d~aTAaaea~~~a 184 (993)
T PLN02414 112 YYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLP-MSNASLLDEGTAAAEAMAMC 184 (993)
T ss_pred CCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCC-hhhEeecCChHHHHHHHHHH
Confidence 3444414555588887665444322111 11233456777788888743 34688999999999966643
No 491
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.90 E-value=1 Score=48.19 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
...++|.|..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a---~-~~~~~vly~S 55 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAA---L-NGGYPVLYFS 55 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHH---H-TTSSEEEEEE
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHH---H-hcCCeEEEEc
Confidence 357899999999999999999999885 2 3479999997
No 492
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=90.59 E-value=0.84 Score=48.56 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.|.|.+--.|+||||+|.-|+-+|. ++|+||+.+-
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa-----~~G~kVg~lD 36 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALA-----RMGKKVGLLD 36 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHH-----CTT--EEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3567777789999999999999995 8999999887
No 493
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.46 E-value=1.7 Score=44.66 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-CCCCcHHHHHH
Q 003472 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-PHDSDSRFLFT 95 (817)
Q Consensus 38 ~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~-~~~~d~~~~~~ 95 (817)
..+=|.| ..|+|||++...+++.|+ +.++++..+ +- -...|+.++.+
T Consensus 14 ~~i~v~G-p~GSGKTaLie~~~~~L~------~~~~~aVI~----~Di~t~~Da~~l~~ 61 (202)
T COG0378 14 LRIGVGG-PPGSGKTALIEKTLRALK------DEYKIAVIT----GDIYTKEDADRLRK 61 (202)
T ss_pred EEEEecC-CCCcCHHHHHHHHHHHHH------hhCCeEEEe----ceeechhhHHHHHh
Confidence 3444444 489999999999999993 348888877 21 12356565555
No 494
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.39 E-value=0.36 Score=48.78 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
.++.+.|+|. +|+||||+...|++.|. .+|++|+..|
T Consensus 5 ~~~ii~ivG~-sgsGKTTLi~~li~~l~-----~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (173)
T ss_pred CceEEEEECC-CCChHHHHHHHHHHHHh-----hcCCeEEEEE
Confidence 3567788885 99999999999999993 7799999999
No 495
>PRK08840 replicative DNA helicase; Provisional
Probab=90.37 E-value=2 Score=50.20 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 36 ~~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
....++|.|..+|+|||++++-+++... . ++|+.|.+|= -+.+..+.+.+..
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a---~-~~~~~v~~fS------lEMs~~ql~~Rll 266 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAA---M-DQDKPVLIFS------LEMPAEQLMMRML 266 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHH---H-hCCCeEEEEe------ccCCHHHHHHHHH
Confidence 4578999999999999999999988763 2 4688999995 2344445555543
No 496
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=90.37 E-value=0.36 Score=53.93 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCcEEEeeeee------ccccccccchhhhcCCCCceeecc--cccCCCCCcceEEEechHHHhhhcCC
Q 003472 643 QRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVGD 714 (817)
Q Consensus 643 l~~Lr~Lc~~~GilLI~DEV~T------GfGRtG~~~a~e~~gv~PDivtlg--K~LggGy~PlsAvl~s~~i~d~~~~~ 714 (817)
++++.+++++|++++|.|=--- -+|-.++.-..+...--.|++||| |.|||= --|.+++++++++.+..+
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP--QaGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP--QAGIIVGKKELIEKLKKH 236 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS---S-EEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC--CeEEEEeCHHHHHHHhhC
Confidence 8999999999999999996431 112222333333344458999994 778772 235688999999988643
Q ss_pred CccceeecccCCCCCHHHHHHHHHHHHHhcC
Q 003472 715 SKLKALLHGHSYSAHALGCAAAAKSIKWFKD 745 (817)
Q Consensus 715 ~~~~~~~h~~T~~gnPla~AAAlA~L~~l~~ 745 (817)
. .+-.+--+-+..|+-.++|+.+.+
T Consensus 237 p------l~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 237 P------LGRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp H------HTTT-B--HHHHHHHHHHHHH---
T ss_pred C------CcceEeeCHHHHHHHHHHHHHHHH
Confidence 1 334555678999999999998754
No 497
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=90.11 E-value=5.5 Score=41.06 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 003472 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (817)
Q Consensus 39 ~~~i~gt~t~~GKT~vs~~L~~~l 62 (817)
.+-|+|. .|+||||+...|++.+
T Consensus 3 ~i~i~G~-~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGP-VGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 3556665 8999999999999998
No 498
>PRK10037 cell division protein; Provisional
Probab=90.00 E-value=0.39 Score=51.06 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|+.|-|.+.-.||||||++..|+.+|. ++|+||...=
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQ-----MLGENVLVID 37 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 678999999999999999999999994 8899988764
No 499
>PRK13768 GTPase; Provisional
Probab=89.95 E-value=0.37 Score=51.58 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (817)
|..++|+|. .|+||||++..+..++. ++|++|..+.
T Consensus 2 ~~~i~v~G~-~G~GKTt~~~~~~~~l~-----~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGT-AGSGKTTLTKALSDWLE-----EQGYDVAIVN 37 (253)
T ss_pred cEEEEEECC-CCccHHHHHHHHHHHHH-----hcCCceEEEE
Confidence 457888898 99999999999999994 7799988876
No 500
>PRK07004 replicative DNA helicase; Provisional
Probab=89.86 E-value=2.4 Score=49.51 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCCcHHHHHHhC
Q 003472 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL 97 (817)
Q Consensus 37 ~~~~~i~gt~t~~GKT~vs~~L~~~l~~~~~~~~g~~v~~~KPv~~g~~~~~d~~~~~~~~ 97 (817)
...+.|.+..+|+|||++++-++.... . +.|+.|.+|= -+.+..+.+.+.+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a---~-~~~~~v~~fS------lEM~~~ql~~R~l 262 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVA---V-EYGLPVAVFS------MEMPGTQLAMRML 262 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHH---H-HcCCeEEEEe------CCCCHHHHHHHHH
Confidence 467899999999999999999987652 1 5688999994 2344445555553
Done!