Query 003472
Match_columns 817
No_of_seqs 300 out of 3158
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:25:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003472.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1520-1524//hhsearch_pdb/003472hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0g_A Adenosylmethionine-8-am 1.0 1 1 1042.8 47.1 774 7-816 4-793 (831)
2 4e3q_A Pyruvate transaminase; 1.0 1 1 654.5 31.3 406 347-816 21-433 (473)
3 4atq_A 4-aminobutyrate transam 1.0 1 1 605.3 36.4 366 374-816 45-417 (456)
4 4ao9_A Beta-phenylalanine amin 1.0 1 1 559.8 38.5 382 331-816 25-414 (454)
5 3hmu_A Aminotransferase, class 1.0 1 1 505.3 28.9 397 352-816 14-417 (472)
6 3i5t_A Aminotransferase; pyrid 1.0 1 1 502.4 35.3 402 350-816 11-419 (476)
7 3gju_A Putative aminotransfera 1.0 1 1 473.4 31.6 403 352-816 8-419 (460)
8 4a6r_A Omega transaminase; tra 1.0 1 1 471.2 33.4 400 351-816 8-414 (459)
9 3tfu_A Adenosylmethionine-8-am 1.0 1 1 462.5 30.6 383 352-816 32-418 (457)
10 3dod_A Adenosylmethionine-8-am 1.0 1 1 453.6 30.4 398 352-816 4-408 (448)
No 1
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=1.00 E-value=1 Score=1042.80 Aligned_cols=774 Identities=67% Similarity=1.117 Sum_probs=628.2
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCCEEEECCCC
Q ss_conf 8992248999998711356799889868888937998089998189999999999513999789-----98534883002
Q 003472 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQ 81 (817)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~t~~GKT~vs~~L~~~l~~~~~~~~-----g~~v~~~KPi~ 81 (817)
||-..|..-..-|..|+++-.+.++.+|.++++|||+||+|++|||+||+|||++|+ ++ |++|+|||||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~ 78 (831)
T 4a0g_A 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQ 78 (831)
T ss_dssp -----------------------CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEECCCC
T ss_conf 654434567665523147888997567666341799978899878999999999998-----441234795278871032
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59999981799997577874345898631011100011378864202479999887566721001000001235677777
Q 003472 82 TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDS 161 (817)
Q Consensus 82 ~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (817)
+|+..++|..++.+.+.++..+| .|++.+++.+... .....|+ +.++++-+...+.+.
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~n---------------~da~~~~~~~~~~------~~~~~~~-~~l~~~~~~~~~~~~ 136 (831)
T 4a0g_A 79 TGFPSDSDSRFVFSKLDSLSLRR---------------QIPISISNSVLHS------SLPAAKS-LGLNVEVSESGMCSL 136 (831)
T ss_dssp CSTTTCCHHHHHHHHHHHHHHHH---------------TCCCEEEEEEEEE------EHHHHHH-HTCCCCBCTTSEEEE
T ss_pred CCCCCCCCHHHHHHHHCCCCCCC---------------HHHHHHHHHHCCC------CHHHHHH-CCCCCCCCCCCEEEE
T ss_conf 68986751388887630355543---------------2689999987287------7546765-135886567734753
Q ss_pred C---------CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 5---------4433000006424665968898472499999589999999998515765311012577778999589987
Q 003472 162 S---------VSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGV 232 (817)
Q Consensus 162 ~---------~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~iiEGagg~ 232 (817)
+ .....+.+++.|++|+|||++++++ +..+..+.+.+.|.+..+...+ .+......+|++||||+||+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~p~sp~~aa~~~-~~~~~~~~i~~~~~~~l~~~a~--~~~~~~~~~D~vvVEGaGGl 213 (831)
T 4a0g_A 137 NFRDEKTVTGAPELLCKTLYAWEAAISPHLAAERE-NATVEDSVVLQMIEKCLKEEME--CGVKSEKSDLLCLVETAGGV 213 (831)
T ss_dssp EEEEEECCTTSCEEEEEEEEECSSSSCHHHHHHHT-TCCCCHHHHHHHHHHHHHHHC-----------CEEEEEECCSST
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHH--CCCCCCCCCCEEEEECCCCC
T ss_conf 36423344334665645406506776878999872-9987999999999999986420--02455666888999899984
Q ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEECCC
Q ss_conf 78789997034675317999999975998829999999999995799289999915899997989985308996986599
Q 003472 233 ASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPP 312 (817)
Q Consensus 233 ~~p~~~~~~~~~la~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlgip~ 312 (817)
++|+..+.+++|+|+.+++|||||+++++|++|++++++++++.++++|.|||+|+....+.+.+.+++++++|+..||.
T Consensus 214 ~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~ 293 (831)
T 4a0g_A 214 ASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPP 293 (831)
T ss_dssp TCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECC
T ss_pred CCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 67878886289999974999899978998189999999999997899679999828866679999999973898316189
Q ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEC
Q ss_conf 99999510123210000336438999999999998852050056148532347779878999729999105860389837
Q 003472 313 LPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD 392 (817)
Q Consensus 313 ~~~~~~~~~~~~l~~~~~~ls~l~~~l~~~~~~~~~~~~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~ 392 (817)
+|.+...++.+|++.....++.+++.+...+.+|+.+++++.+++.+++||||++++.+....|.+|++++|.++++||.
T Consensus 294 lP~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~ 373 (831)
T 4a0g_A 294 VPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKA 373 (831)
T ss_dssp CCCCTTCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEH
T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEC
T ss_conf 99998899999986313468999999999999989999999987660424786675434678975899744464599978
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 66754451220356522357899899799999999887315558999999679999999983119998661999078678
Q 003472 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472 (817)
Q Consensus 393 dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGse 472 (817)
||+.++++|||++||||++++||++||+|++|+++|++++.|+++.+++++++++|+++|++++|.+++++|||++||||
T Consensus 374 dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSe 453 (831)
T 4a0g_A 374 SDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGST 453 (831)
T ss_dssp HHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHH
T ss_pred CCCCCCHHEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHH
T ss_conf 99841011024323476427887778799999999876325002455577799999999998679887777997788237
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999853024410002487764555520899981874478642111248998877677887568765558984
Q 003472 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (817)
Q Consensus 473 AvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~ 552 (817)
|||+|||+|+|+|++++|...+ +....++|.+||+++++|||+|++++++|+...|+..+..+|+.+.++++++|.
T Consensus 454 A~E~AlK~A~r~~~~~~g~~~~----~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~ 529 (831)
T 4a0g_A 454 AIEIALKMAFRKFCVDHNFCEA----TEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPT 529 (831)
T ss_dssp HHHHHHHHHHHHHHHTTTC-------------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999999851388765----434456761899964873657514451458654443223433367765667863
Q ss_pred CCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 22247621214871111000234444456730122102691168999999999997419998888807999994533468
Q 003472 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (817)
Q Consensus 553 ~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~ 632 (817)
..+.+++++++.|+.++... ..+.+|++.++.|....+.+.+...|.+.+++.|++.....+++++||||+|||+||+
T Consensus 530 ~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~ 607 (831)
T 4a0g_A 530 VFLSNGSWNISLPESFSEIA--PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGA 607 (831)
T ss_dssp EEEETTEEEEECCTTSCCCC--SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETT
T ss_pred CCCCCCCEEECCCCCCCCCC--CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 33568713744882103344--4432212134430222221034579999999999864431379967999996655368
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHC
Q ss_conf 97312898899999999762399399851100656556310230008999622004334788875118982257774112
Q 003472 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (817)
Q Consensus 633 gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~ 712 (817)
||++++|++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+|||||+|+|++++++++++.|.
T Consensus 608 gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~ 687 (831)
T 4a0g_A 608 GGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFS 687 (831)
T ss_dssp TTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHH
T ss_conf 99852888999999999998198699875763612478731467609997679982112367557189998799999985
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEE
Q ss_conf 88865300001589987899999999999951967012089999999999999999998739992419755169999971
Q 003472 713 GDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQ 792 (817)
Q Consensus 713 ~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~ 792 (817)
...+.+.+.|++||++||++||+++++|++++++++.+++.+++++++++|.+.+.+.+++++.|.+|||.|+|++||+.
T Consensus 688 ~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~ 767 (831)
T 4a0g_A 688 GDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELK 767 (831)
T ss_dssp SSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC
T ss_pred CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEE
T ss_conf 44666664042477606999999999999998658999999999999999999999998638984267415528999983
Q ss_pred CCCCCCCC--CHHHHHHHHHHHCCCC
Q ss_conf 07977771--1299999999982989
Q 003472 793 AAGCNAGY--CLIELFLYNFLTTGMH 816 (817)
Q Consensus 793 ~~~~~~~~--~~~~~~~~~~l~~G~~ 816 (817)
++.....+ .....+...++++||+
T Consensus 768 ~~~~~~~~~~~~a~~~~~~l~e~Gv~ 793 (831)
T 4a0g_A 768 ADASNSGYASLYAKSLLIMLREDGIF 793 (831)
T ss_dssp ---------CHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 47555666658999999999978968
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=1.00 E-value=1 Score=654.48 Aligned_cols=406 Identities=18% Similarity=0.244 Sum_probs=338.6
Q ss_pred HHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88520500561485323477798789997299991058603898376675445122035652235789989979999999
Q 003472 347 IQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426 (817)
Q Consensus 347 ~~~~~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~ 426 (817)
+.+...+..++.+++||||++++.+....|++|++++|.| +||+||| +|||+++|+|++++||+ ||+|++|++
T Consensus 21 ~~~~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~ 93 (473)
T 4e3q_A 21 MNKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPY--IVDVNGR----RYLDANSGLWNMVAGFD-HKGLIDAAK 93 (473)
T ss_dssp -CCCCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTE--EEETTCC----EEEETTTTTTTCTTCSC-CHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCE--EEECCCC----EEEECCCCHHHHHCCCC-CHHHHHHHH
T ss_conf 8984158999865057788871230568997999602188--9969989----99982217987302679-899999999
Q ss_pred HHHHHCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9887315558-999999679999999983119998661999078678999999999998530244100024877645555
Q 003472 427 YTAARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (817)
Q Consensus 427 ~q~~~~~~~~-~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~ 505 (817)
+|++++.+.. +....+++.++||++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++
T Consensus 94 ~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~------------~~ 159 (473)
T 4e3q_A 94 AQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGK------------PQ 159 (473)
T ss_dssp HHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TT
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CC
T ss_conf 9997545622456656889999999999638987-057997683488999999999-987774089------------87
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCH
Q ss_conf 20899981874478642111248998877677887568765558984222476212148711110002344444567301
Q 003472 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (817)
Q Consensus 506 r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~ 585 (817)
|.+||+|+++|||+|++++++|+.. ++.. +.+|. .+..+++.|++++.. +.
T Consensus 160 r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~------------~~~~~----~~~~~~~~p~~~~~~----------~~-- 210 (473)
T 4e3q_A 160 KRKILTRWNAYHGVTAVSASMTGKP-YNSV------------FGLPL----PGFVHLTCPHYWRYG----------EE-- 210 (473)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSCCG-GGGG------------GTCSC----TTEEEECCCCHHHHS----------CT--
T ss_pred CCEEEEEECEECCCCCCCCCCCCCC-CCCC------------CCCCC----CCCCCCCCCCCCCCC----------CC--
T ss_conf 5248986050778764335433332-3345------------67888----765446777534566----------54--
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 22102691168999999999997419998888807999994533468973128988999999997623993998511006
Q 003472 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (817)
Q Consensus 586 ~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TG 665 (817)
....+.....+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++||++|++||++||+||||||
T Consensus 211 ----~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tG 281 (473)
T 4e3q_A 211 ----GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICG 281 (473)
T ss_dssp ----TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTS
T ss_pred ----CCHHHHHHHHHHHHHHHHHHH----HCCCCEEEEEECCC-CCCCCCEECCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf ----312567899999999999986----28986579996775-477872528879978999874166469841576335
Q ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCC-CCCCEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5655631023000899962200433478887511898225777411288-865300001589987899999999999951
Q 003472 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFK 744 (817)
Q Consensus 666 fGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~-~~~~~~~h~~T~~gnPla~Aaala~L~ile 744 (817)
|||||++|+++++|++|||+|+||+|+|||+|+||+++++++++.+... ....++.|++||+|||++||||+++|++++
T Consensus 282 fGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~ 361 (473)
T 4e3q_A 282 FGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVM 361 (473)
T ss_dssp SSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 77355304887468999858862556577777641014689998760345545545667777888403355555566650
Q ss_pred CCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCC-----CHHHHHHHHHHHCCCC
Q ss_conf 96701208999999999999999999873999241975516999997107977771-----1299999999982989
Q 003472 745 DPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 745 ~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~G~~ 816 (817)
+ +++.++++.++++|.+++.++ .+++.|++|||.|+|++|||+++.....+ .....+...++++|++
T Consensus 362 ~----~~l~~~~~~~g~~l~~~L~~l-~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 433 (473)
T 4e3q_A 362 N----EGLAENVRRLAPRFEERLKHI-AERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLI 433 (473)
T ss_dssp H----SSHHHHHHHHHHHHHHHHHHH-TTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEE
T ss_pred C----CCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 4----409999999999999999997-43898268842334999998447544666642289999999999978918
No 3
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=1.00 E-value=1 Score=605.27 Aligned_cols=366 Identities=24% Similarity=0.267 Sum_probs=302.1
Q ss_pred CCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 97299991058603898376675445122035652235789989979999999988731555899999967999999998
Q 003472 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (817)
Q Consensus 374 ~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~ 453 (817)
..|+++++++|.+ +||+||| +||||++|+|++++||+ ||+|++|+++|++++.|+.+....+++..+|+++|+
T Consensus 45 ~~P~~i~~a~G~~--l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~ 117 (456)
T 4atq_A 45 GVPVYVEDADGGI--IRDVDGN----SFIDLGSGIAVTSVGAS-DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLN 117 (456)
T ss_dssp SCSSCEEEEETTE--EEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCE--EEECCCC----EEEECCCCHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9888699612398--9969979----99894534897750789-999999999998616673467667679999999999
Q ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-C
Q ss_conf 311999866199907867899999999999853024410002487764555520899981874478642111248998-8
Q 003472 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-Y 532 (817)
Q Consensus 454 ~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~-~ 532 (817)
+++|...+++|+|+||||||||+|||+| |++++| ++||+|+++|||+|.+++++++... +
T Consensus 118 ~~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~r------------------~~ii~~~~~yHG~t~~als~t~~~~~~ 178 (456)
T 4atq_A 118 RLTPGDHAKRTVLFNSGAEAVENAVKVA-RLATGR------------------DAVVAFDHAYHGRTNLTMALTAKAMPY 178 (456)
T ss_dssp HHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHH-HHHHCC------------------CEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 8579777758999487589999999998-663057------------------718997136678611112234575433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 77677887568765558984222476212148711110002344444567301221026911689999999999974199
Q 003472 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (817)
Q Consensus 533 r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~ 612 (817)
+.. .++ +.+++.++|.|++++... ++ ....+......+.+++.
T Consensus 179 ~~~--------~~p--------~~~~~~~~p~~~~~~~~~--------~~--------~~~~~~~~~~~~~~e~~----- 221 (456)
T 4atq_A 179 KTN--------FGP--------FAPEVYRMPMSYPFREEN--------PE--------ITGAEAAKRAITMIEKQ----- 221 (456)
T ss_dssp TTT--------SCS--------CCSSEEEECCCCGGGCSS--------TT--------CCHHHHHHHHHHHHHHH-----
T ss_pred CCC--------CCC--------CCCCCEECCCCCCCCCCC--------CC--------CCHHHHHHHHHHHHHHH-----
T ss_conf 467--------788--------656633225434544578--------76--------35899999899999975-----
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf 98888807999994533468973128988999999997623993998511006565563102300089996220043347
Q 003472 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (817)
Q Consensus 613 ~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~Lg 692 (817)
.+++++||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+||++|
T Consensus 222 --~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg 298 (456)
T 4atq_A 222 --IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIA 298 (456)
T ss_dssp --TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGG
T ss_pred --HCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf --26786689996356-577884166043437799998633883674141246677636542001598996433332235
Q ss_pred CCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88875118982257774112888653000015899878999999999999519670120899999999999999999987
Q 003472 693 GGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQIS 772 (817)
Q Consensus 693 gGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~ 772 (817)
|| +|+|++++++++++.+.. ..|++||+|||++||||+++|+++++ +++.++++.++++|.++|.++.+
T Consensus 299 gg-~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~----~~l~~~~~~~g~~l~~~L~~l~~ 367 (456)
T 4atq_A 299 GG-LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQ----HDLNGRARHIEELALGKLRELAA 367 (456)
T ss_dssp TT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCEEEEECHHHHHCCCC------CCCCCCCCCCHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75-774236740888732266------67777899886788766777889863----53999999999999999999998
Q ss_pred C-----CCCCCEEEEEEEEEEEEEECCCCCC-CCCHHHHHHHHHHHCCCC
Q ss_conf 3-----9992419755169999971079777-711299999999982989
Q 003472 773 S-----HRTVQRVVALGTLCAIELQAAGCNA-GYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 773 ~-----~p~I~~VrG~Glm~gIel~~~~~~~-~~~~~~~~~~~~l~~G~~ 816 (817)
+ ++.|++|||.|+|++|||+++.... +.+....+...++++|++
T Consensus 368 ~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl 417 (456)
T 4atq_A 368 ELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVI 417 (456)
T ss_dssp HCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 60002699068765344499999811777785799999999999978988
No 4
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=1.00 E-value=1 Score=559.82 Aligned_cols=382 Identities=16% Similarity=0.184 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf 36438999999999998852050056148532347779878999729999105860389837667544512203565223
Q 003472 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (817)
Q Consensus 331 ~ls~l~~~l~~~~~~~~~~~~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~ 410 (817)
.++..+.....+|.++.++++.+.+++.+.+..-.+....+-...|+++++++|.+ +||+||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~--l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAA--LWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTE--EEETTCC----EEEESSGGGGT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCE--EEECCCC----EEEECCCCHHH
T ss_conf 45666788998876559076999999761488998977340489995189826498--9979999----99896633886
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57899899799999999887315558999999679999999983119998661999078678999999999998530244
Q 003472 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (817)
Q Consensus 411 ~~lGh~~~p~I~~Ai~~q~~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G 490 (817)
+++||+ ||+|++|+.+|+++..+.. ..+....+|+++|++.++. +++|+|+|||+||||+|||+| |.|++|
T Consensus 99 ~~lGH~-hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~tgr-- 169 (454)
T 4ao9_A 99 GVYGHS-APEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHFTGR-- 169 (454)
T ss_dssp TTTCSC-CHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHTC--
T ss_pred HCCCCC-CHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHH-HHCCCC--
T ss_conf 302489-8999999999986388864---7817799999999986789--887999696399999999998-860467--
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHH
Q ss_conf 10002487764555520899981874478642111248998877677887568765558984222476212148711110
Q 003472 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (817)
Q Consensus 491 ~~~~~~~~~~~~~~~r~~II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~ 570 (817)
.+||+|+++|||+|.++++.+++..... . ...
T Consensus 170 ----------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~-----------------------~--~~~------- 201 (454)
T 4ao9_A 170 ----------------RKIVVFSGGYHGGVLGFGARPSPTTVPF-----------------------D--FLV------- 201 (454)
T ss_dssp ----------------CEEEEETTCBCSTTCBBSSSBCTTSCCS-----------------------E--EEE-------
T ss_pred ----------------CEEEEEECCCCCCCCCCCCCCCCCCCCC-----------------------C--CCC-------
T ss_conf ----------------7699981776775322333456766777-----------------------7--636-------
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 00234444456730122102691168999999999997419998888807999994533468973128988999999997
Q 003472 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (817)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc 650 (817)
.+|||. +.+++.+++ .++++||||+||| ||++|+++|+++||++||++|
T Consensus 202 -------~p~nd~------------------~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 202 -------LPYNDA------------------QTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------ECTTCH------------------HHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------CCCCHH------------------HHHHHHHHH-----CCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHH
T ss_conf -------797639------------------999998863-----6885689970450-177786588446678898877
Q ss_pred HHCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCH
Q ss_conf 62399399851100656556310230008999622004334788875118982257774112888653000015899878
Q 003472 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHA 730 (817)
Q Consensus 651 ~~~gilLI~DEV~TGfGRtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnP 730 (817)
++||++||+||||| ||||++|+++++||+|||+|+||+|||| +|++|+++++++++.+.... .++.|++||++||
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~~--~~~~h~~T~~gnP 325 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRT--GPLAHSGTFNNNV 325 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTTT--CSCCCCCTTTTCH
T ss_pred HHCCCEEEEECCCC--CCCCCCCCHHCCCCCCCEEEECCCCCCC-CCCEEEEEHHHHHHHHHHCC--CCCCCCCCCCCCH
T ss_conf 63598799977876--8773102021159998689864225789-85224556799999986225--7765567888898
Q ss_pred HHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCC--------CH
Q ss_conf 9999999999995196701208999999999999999999873999241975516999997107977771--------12
Q 003472 731 LGCAAAAKSIKWFKDPQTNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY--------CL 802 (817)
Q Consensus 731 la~Aaala~L~ile~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~--------~~ 802 (817)
++|||++++|++++++ ++.++.+.++++|.++|.++.++++.+.+|||.|+|++++|++.. ..++ ..
T Consensus 326 la~AAala~L~~l~~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~-~~~~~~~~~~d~~~ 400 (454)
T 4ao9_A 326 MTMAAGYAGLTKLFTP----EAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGD-VRSSEDLAAVDGRL 400 (454)
T ss_dssp HHHHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSC-CCSGGGGTTCCHHH
T ss_pred HHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEECCC-CCCHHHHHHHHHHH
T ss_conf 9999999999999655----756899999999999999998658997799612509999985688-78889987655999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999982989
Q 003472 803 IELFLYNFLTTGMH 816 (817)
Q Consensus 803 ~~~~~~~~l~~G~~ 816 (817)
...+...++++||+
T Consensus 401 ~~~~~~~ll~~Gv~ 414 (454)
T 4ao9_A 401 RQLLFFHLLNEDIY 414 (454)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHCCEE
T ss_conf 99999999979889
No 5
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=1.00 E-value=1 Score=505.33 Aligned_cols=397 Identities=18% Similarity=0.273 Sum_probs=318.9
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50056148532347779878999729999105860389837667544512203565223578998997999999998873
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~ 431 (817)
++.+++.+++|+||++++.+....|+++++++|.+ +||.||+ +||||++|+|++++||+ ||+|++|+.+|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~--l~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~ 86 (472)
T 3hmu_A 14 ELQALDAAHHLHPFSANNALGEEGTRVITRARGVW--LNDSEGE----EILDAMAGLWCVNIGYG-RDELAEVAARQMRE 86 (472)
T ss_dssp HHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTE--EEETTCC----EEECTTHHHHTCTTCBC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCE--EEECCCC----EEEECCCCHHHCCCCCC-CHHHHHHHHHHHHH
T ss_conf 89987775535775454444557980699865398--9979999----99988875642217889-89999999999985
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 155-5899999967999999998311999866199907867899999999999853024410002487764555520899
Q 003472 432 FGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (817)
Q Consensus 432 ~~~-~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II 510 (817)
+.+ ..+..+.+++..+|+++|++..+.+ .++++|++||+|||+.|+|++ +.|+..+|. +++.+||
T Consensus 87 ~~~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~------------~~~~~ii 152 (472)
T 3hmu_A 87 LPYYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQ------------PEKTVII 152 (472)
T ss_dssp CSCCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CCCCEEE
T ss_conf 46520356558999999999999857788-787999598899999999999-998874389------------8887899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHC
Q ss_conf 98187447864211124899887767788756876555898422247621214871111000234444456730122102
Q 003472 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (817)
Q Consensus 511 ~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~ 590 (817)
+++++|||.+.+++++++...++..+ . + ..++.+++.|+.|+. ++.
T Consensus 153 ~~~~~yHg~t~~~~~~~~~~~~~~~~------------~-~----~~~~~~v~~p~~~~~----------~~~------- 198 (472)
T 3hmu_A 153 SRKNAYHGSTVASSALGGMAGMHAQS------------G-L----IPDVHHINQPNWWAE----------GGD------- 198 (472)
T ss_dssp EETTCCCCSSHHHHHHSCCHHHHHTT------------C-C----CSSEEEECCCCHHHH----------CTT-------
T ss_pred EECCCCCCCCHHHHHCCCCHHHCCCC------------C-C----CCCCEEECCCCCCCC----------CCC-------
T ss_conf 98585787657762036971222555------------7-8----899579578754467----------765-------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 69116899999999999741999888880799999453346897312898899999999762399399851100656556
Q 003472 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (817)
Q Consensus 591 ~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG 670 (817)
.+.+.....+.+.+++.+++ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||+|
T Consensus 199 ~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G 273 (472)
T 3hmu_A 199 MDPEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG 273 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHH----CCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 67777889999999999986----18997799997675-37888556998999999999998198899971654875357
Q ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 31023000899962200433478887511898225777411288865300001589987899999999999951967012
Q 003472 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTNH 750 (817)
Q Consensus 671 ~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~~ 750 (817)
++|+++++++.|||+|+||++|||++|+|++++++++++.+.. ..+.|++||++||++|+|++++|++++++++.+
T Consensus 274 ~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~ 349 (472)
T 3hmu_A 274 NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAAAVALENLRILEEENILD 349 (472)
T ss_dssp SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHCCCCCEEEECHHHHCCCCCEEEEEECHHHHHHCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6215487399976322001432587564999999999974066----875205788888899999999999998757999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCC------CCHHHHHHHHHHHCCCC
Q ss_conf 0899999999999999999987399924197551699999710797777------11299999999982989
Q 003472 751 NIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG------YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 751 ~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~------~~~~~~~~~~~l~~G~~ 816 (817)
++. +..++++++.+ +.+.+++.+.+||+.|+|+++++.++..... ......+...++++||+
T Consensus 350 ~~~---~~~~~~l~~~L-~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 417 (472)
T 3hmu_A 350 HVR---NVAAPYLKEKW-EALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLI 417 (472)
T ss_dssp HHH---HTHHHHHHHHH-HGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBC
T ss_pred HHH---HHHHHHHHHHH-HHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 999---99999999999-988628982789832756899993574435665400699999999999988968
No 6
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=1.00 E-value=1 Score=502.40 Aligned_cols=402 Identities=19% Similarity=0.226 Sum_probs=324.8
Q ss_pred HCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 20500561485323477798789997299991058603898376675445122035652235789989979999999988
Q 003472 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (817)
Q Consensus 350 ~~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~ 429 (817)
+.++.+++.+++||||++++.+....|+++++++|.+ +||.||+ +||||++|+|++++||+ ||+|++|+.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~--~~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l 83 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIY--VHTEDGR----RLIDGPAGMWCAQVGYG-RREIVDAMAHQA 83 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTE--EEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCE--EEECCCC----EEEECCCCHHHCCCCCC-CHHHHHHHHHHH
T ss_conf 0478862414240576553322447980699734188--9989999----99988876320337889-889999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 73155589999996799999999831199986619990786789999999999985302441000248776455552089
Q 003472 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (817)
Q Consensus 430 ~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~I 509 (817)
+++.+.....+.++...+|+++|++..+.+ .++++|++||+|||+.|||++ +.+...+|. ++|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~------------~~~~~v 149 (476)
T 3i5t_A 84 MVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGR------------PQKKRI 149 (476)
T ss_dssp HHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CCCCEE
T ss_conf 743575567668989999999997328888-587999686599999999999-999875489------------999789
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 99818744786421112489988776778875687655589842224762121487111100023444445673012210
Q 003472 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (817)
Q Consensus 510 I~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (817)
|+++++|||.+.+++++++...++..+ .++ ..++.+++.|..++. |+
T Consensus 150 i~~~~~yHg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~---------~~-------- 196 (476)
T 3i5t_A 150 IVRYDGYHGSTALTAACTGRTGNWPNF------------DIA----QDRISFLSSPNPRHA---------GN-------- 196 (476)
T ss_dssp EEETTCCCCSSHHHHHTCCCGGGCTTS------------CCC----CTTEEEECCCCGGGC---------TT--------
T ss_pred EEECCCCCCCCHHHCCCCCCHHHCCCC------------CCC----CCCCEEECCCCCCCC---------CC--------
T ss_conf 999188676774314236870012355------------788----999279578765466---------78--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 26911689999999999974199988888079999945334689731289889999999976239939985110065655
Q 003472 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (817)
Q Consensus 590 ~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRt 669 (817)
.+.+.....+.+.+++.+++ .+++++++||+||+ ++++|+++++++||++|+++|++||++||+|||||||||+
T Consensus 197 -~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 197 -RSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred -CCHHHHHHHHHHHHHHHHHH----CCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf -76577789999999999986----18998799997783-6889852698899999999999829989997054487654
Q ss_pred CCCCHHH-HCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCC-CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6310230-008999622004334788875118982257774112888-65300001589987899999999999951967
Q 003472 670 GVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS-KLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 670 G~~~a~e-~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~-~~~~~~h~~T~~gnPla~Aaala~L~ile~~~ 747 (817)
|++|+++ ++++.|||+|+||++++||+|+|++++++++++.+.... ..+.+.|++||++||++|+|++++|+++++++
T Consensus 271 G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~ 350 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREG 350 (476)
T ss_dssp SSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 27314420038896552320342378757699999999999874378656532104787858999999999999987379
Q ss_pred CHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCC-----CHHHHHHHHHHHCCCC
Q ss_conf 01208999999999999999999873999241975516999997107977771-----1299999999982989
Q 003472 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY-----CLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 ~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~-----~~~~~~~~~~l~~G~~ 816 (817)
+.++ .+..++++++.+. .+.+++.+.++|+.|+|+++++.++...... .....+...++++|++
T Consensus 351 ~~~~----~~~~~~~l~~~L~-~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 419 (476)
T 3i5t_A 351 IVDQ----AREMADYFAAALA-SLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLI 419 (476)
T ss_dssp HHHH----HHHHHHHHHHHHH-TTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHH----HHHHHHHHHHHHH-HHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 9999----9999999999999-9853898379972486268998247444566530269999999999978988
No 7
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=1.00 E-value=1 Score=473.41 Aligned_cols=403 Identities=20% Similarity=0.281 Sum_probs=320.8
Q ss_pred CCHHHHCCCCCCCCCCCCCCCC--CCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5005614853234777987899--97299991058603898376675445122035652235789989979999999988
Q 003472 352 DMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~~~~~~--~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~ 429 (817)
++.+.+.+++||||++++.+.. ..|+++++++|.+ +||.||+ +||||++++|++++||+ ||+|++|+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~--~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVT--VWDNNGR----KSIDAFAGLYCVNVGYG-RQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTE--EEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCE--EEECCCC----EEEECCCCHHHCCCCCC-CHHHHHHHHHHH
T ss_conf 8997544000467434444333688861899722068--9979999----99988866652657889-999999999999
Q ss_pred HHCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 73155-58999999679999999983119998661999078678999999999998530244100024877645555208
Q 003472 430 ARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (817)
Q Consensus 430 ~~~~~-~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~ 508 (817)
+++.+ .....+.++...+|+++|++..+.+ .++++|++||+|||+.|+|++ +.++..+|. +++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~------------~~~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGR------------PEKKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CCCCE
T ss_conf 8564433556658899999999999638898-687999596499999999999-998874388------------88878
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99981874478642111248998877677887568765558984222476212148711110002344444567301221
Q 003472 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (817)
Q Consensus 509 II~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (817)
||+++++|||.+.+++++++...++..+ .+. ..++.+++.|..|++ ++.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~----------~~~----- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNAF------------DLP----RAPVLHTEAPYYFRR----------TDR----- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTTT------------TCS----CTTEEEECCCCGGGC----------SCT-----
T ss_pred EEEECCCCCCCCHHHHHCCCCCCCCCCC------------CCC----CCCCEEECCCCCCCC----------CCC-----
T ss_conf 9998997698878876515981212355------------778----899779379754467----------765-----
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 02691168999999999997419998888807999994533468973128988999999997623993998511006565
Q 003472 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (817)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGR 668 (817)
+.+.+.....+.+.+++.+++ .+++++++||+||+ ++++|+++++++|+++|+++|++||+++|+|||+|||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -CCCHHHHHHHHHHHHHHHHHH----CCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf -667667789999999999986----08997799998874-378997569889999999999981988999621007884
Q ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCC-CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 5631023000899962200433478887511898225777411288-865300001589987899999999999951967
Q 003472 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 669 tG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~-~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~ 747 (817)
+|++|+++++++.||++|+||+|++||+|+|++++++++++.+... .....+.|++||++||++|++++++|+++++++
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHCCCCCCEEEEEHHHCCCCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 14621576529998756320231478887499998999999875155556655567888989899999999999987155
Q ss_pred CHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCC-----CCHHHHHHHHHHHCCCC
Q ss_conf 0120899999999999999999987399924197551699999710797777-----11299999999982989
Q 003472 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 ~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~G~~ 816 (817)
+.++ .+..++++++.+.+.+++++.+.++|+.|+|+++++.++..... ......+...++++||+
T Consensus 350 ~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 419 (460)
T 3gju_A 350 LVTN----AGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVI 419 (460)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEE
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 9999----999999999999999865997688862568999998257554566651479999999999979938
No 8
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=1.00 E-value=1 Score=471.22 Aligned_cols=400 Identities=17% Similarity=0.271 Sum_probs=322.9
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 05005614853234777987899972999910586038983766754451220356522357899899799999999887
Q 003472 351 CDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (817)
Q Consensus 351 ~~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~ 430 (817)
.++.+++.+++||||++++.+....|.++++++|.+ +||.||+ +||||++++|++++||+ ||+|++|+.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~--~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~ 80 (459)
T 4a6r_A 8 SQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVY--LWDSEGN----KIIDGMAGLWCVNVGYG-RKDFAEAARRQME 80 (459)
T ss_dssp --------------------------CCEEEEEBTE--EEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCE--EEECCCC----EEEECCCCHHCCCCCCC-CHHHHHHHHHHHH
T ss_conf 999987664436774333232336982699843388--9979999----99988875111438989-8899999999998
Q ss_pred HCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 315-5589999996799999999831199986619990786789999999999985302441000248776455552089
Q 003472 431 RFG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (817)
Q Consensus 431 ~~~-~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~I 509 (817)
++. +.....+.++...+++++|++..+.+ .++++|++||+||++.|+|++ +.+++.+|. +++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~v 146 (459)
T 4a6r_A 81 ELPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGK------------PEKKTL 146 (459)
T ss_dssp HCSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CCCCEE
T ss_conf 546532335558899999999999858898-798999395499999999999-999875389------------888879
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 99818744786421112489988776778875687655589842224762121487111100023444445673012210
Q 003472 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (817)
Q Consensus 510 I~~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (817)
|+++++|||.+.+++++++...++..+ .+. ..+..+++.|.+|+. ++.
T Consensus 147 i~~~~~yhg~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~~p~~~~~----------~~~------ 194 (459)
T 4a6r_A 147 IGRWNGYHGSTIGGASLGGMKYMHEQG------------DLP----IPGMAHIEQPWWYKH----------GKD------ 194 (459)
T ss_dssp EEETTCCCCSSHHHHHHSCCTTTC---------------CCS----CSSEEEECCCCHHHH----------CTT------
T ss_pred EEECCCCCCCCHHHHHHCCCHHHCCCC------------CCC----CCCCEEECCCCCCCC----------CCC------
T ss_conf 998998287638777624971120256------------777----899778379754567----------865------
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 26911689999999999974199988888079999945334689731289889999999976239939985110065655
Q 003472 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (817)
Q Consensus 590 ~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRt 669 (817)
.|.+.....+.+.+++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||+++|+|||||||||+
T Consensus 195 -~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 268 (459)
T 4a6r_A 195 -MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT 268 (459)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred -CCHHHHHHHHHHHHHHHHHH----CCCCCEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf -68777889999999999997----19997799998785-5888855598899999999999809989996431178715
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 63102300089996220043347888751189822577741128886530000158998789999999999995196701
Q 003472 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 670 G~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~ 749 (817)
|++|+++++++.||++|+||++++|++|+|++++++++++.+... ..+.|++||++||++|++++++|+.++++++.
T Consensus 269 G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 269 GEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG---GDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH---CTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHCCCCCCEEEHHHHHCCCCCCCCCEEECHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
T ss_conf 662067652999773202245107877763102579999986137---87455778887989999999999998613499
Q ss_pred HCHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCC-----CCHHHHHHHHHHHCCCC
Q ss_conf 20899999-999999999999987399924197551699999710797777-----11299999999982989
Q 003472 750 HNIIPERR-ILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAG-----YCLIELFLYNFLTTGMH 816 (817)
Q Consensus 750 ~~l~~~~~-~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~-----~~~~~~~~~~~l~~G~~ 816 (817)
++ .+ ..++++++.+.+.+.+++.+.++|+.|+|+++++.++..... ......+...++++||+
T Consensus 346 ~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 414 (459)
T 4a6r_A 346 QR----VKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLI 414 (459)
T ss_dssp HH----HHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEE
T ss_pred HH----HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 99----9999999999999999861897489987889999998247433456662279999999999979908
No 9
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=1.00 E-value=1 Score=462.47 Aligned_cols=383 Identities=27% Similarity=0.394 Sum_probs=304.9
Q ss_pred CCHHHHCCCCCCCCCCC-CCCCCCCEEEEEEECCCEEEEEEC-CCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 50056148532347779-878999729999105860389837-6675445122035652235789989979999999988
Q 003472 352 DMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~-~~~~~~~p~~i~~~~G~~~~i~D~-dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~ 429 (817)
++.+++.+++|+||+++ +. ...|.++++++|.+ +||. ||+. .+||||++|+|++++||+ ||+|++|+.+|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~--l~d~~dG~~--~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~ 104 (457)
T 3tfu_A 32 QIIAVDGAHLWHPYSSIGRE--AVSPVVAVAAHGAW--LTLIRDGQP--IEVLDAMSSWWTAIHGHG-HPALDQALTTQL 104 (457)
T ss_dssp HHHHHHHHHBCCTTCCSSCC--SSCCEEEEEEEBTE--EEEEETTEE--EEEEETTHHHHTCTTCBT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCC--CCCCCEEEEEECCE--EEECCCCCE--EEEEECCCCHHHHCCCCC-CHHHHHHHHHHH
T ss_conf 99998886448665455446--78981499603388--998259975--179977775765126889-899999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 73155589999996799999999831199986619990786789999999999985302441000248776455552089
Q 003472 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (817)
Q Consensus 430 ~~~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~I 509 (817)
+++.+..+..+.+++..+|+++|++..+.+ .++++|++||+|||+.|+|++ +.|+..+|. +++.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~------------~g~~~i 170 (457)
T 3tfu_A 105 RVMNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGL------------PGKRRL 170 (457)
T ss_dssp HHCSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHCCC------------CCCCEE
T ss_conf 754676556557899999999999758888-687999485899999999999-999985489------------988369
Q ss_pred EEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 9981874478642111248-998877677887568765558984222476212148711110002344444567301221
Q 003472 510 LALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (817)
Q Consensus 510 I~~~gsyHG~t~galslt~-~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (817)
|+++++|||.+.+++++++ ...++.. +. + ...+..+++.|... |.
T Consensus 171 i~~~~~yhg~~~~~~~~~~~~~~~~~~-----~~---~--------~~~~~~~~~~p~~~-----------~~------- 216 (457)
T 3tfu_A 171 MTWRGGYHGDTFLAMSICDPHGGMHSL-----WT---D--------VLAAQVFAPQVPRD-----------YD------- 216 (457)
T ss_dssp EEETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS-----------CC-------
T ss_pred EEECCCCCCCCHHHHCCCCCCCCCCCC-----CC---C--------CCCCCEEECCCCCC-----------CC-------
T ss_conf 998688577527763046886421245-----66---7--------78986570699755-----------47-------
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 026911689999999999974199988888079999945-3346897312898899999999762399399851100656
Q 003472 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP-VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (817)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEP-V~qg~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfG 667 (817)
....+.+++.+++ .++++++||+|| + |+++|+++++++|+++|+++|++||++||+||||||||
T Consensus 217 ---------~~d~~~le~~l~~-----~~~~~aavi~ep~~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g 281 (457)
T 3tfu_A 217 ---------PAYSAAFEAQLAQ-----HAGELAAVVVEPVV-QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFG 281 (457)
T ss_dssp ---------HHHHHHHHHHHHH-----HGGGEEEEEECSSE-ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ---------HHHHHHHHHHHHH-----CCCCEEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf ---------7799999999971-----89978999996987-67898625988999999999998298899973762876
Q ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 55631023000899962200433478887511898225777411288865300001589987899999999999951967
Q 003472 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQ 747 (817)
Q Consensus 668 RtG~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~ 747 (817)
|+|++|+++++++.||++|+||+|+|||+|+|++++++++++.+... ....+.|++||++||++|++++++|+++++++
T Consensus 282 r~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~-~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~ 360 (457)
T 3tfu_A 282 RTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG-AAGALMHGPTFMANPLACAVSVASVELLLGQD 360 (457)
T ss_dssp TTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS-SSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHCCCCCEEEEECHHHHCCCCCEEEEEECHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 46434576752997529998725538873538889869999986336-88854671577757999999999999986558
Q ss_pred CHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 012089999999999999999998739992419755169999971079777711299999999982989
Q 003472 748 TNHNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGYCLIELFLYNFLTTGMH 816 (817)
Q Consensus 748 ~~~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~~~~~~~~~~~l~~G~~ 816 (817)
+.++.+.+++++.+.+.++ .+++.+.++|+.|+|+++++.+.. ....+...++++||+
T Consensus 361 ----~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~l~~~~------~~~~~~~~l~~~Gv~ 418 (457)
T 3tfu_A 361 ----WRTRITELAAGLTAGLDTA-RALPAVTDVRVCGAIGVIECDRPV------DLAVATPAALDRGVW 418 (457)
T ss_dssp ----HHHHHHHHHHHHHHHHGGG-GGSTTEEEEEECSSCEEEEESSCC------CHHHHHHHHHHTTEE
T ss_pred ----HHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCEEEEEEECCCC------CHHHHHHHHHHCCEE
T ss_conf ----9999999999999999987-439982366227728999979833------499999999979958
No 10
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=1.00 E-value=1 Score=453.62 Aligned_cols=398 Identities=27% Similarity=0.392 Sum_probs=314.3
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50056148532347779878999729999105860389837667544512203565223578998997999999998873
Q 003472 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (817)
Q Consensus 352 ~l~~~~~~~l~~P~~~~~~~~~~~p~~i~~~~G~~~~i~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~I~~Ai~~q~~~ 431 (817)
++.+.+.+++||||++++.+ ...|+++++++|.+ +||.||+ +|||+++++|++++||+ ||+|++|+.+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~~--v~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~ 75 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDY-DENPLIIESGTGIK--VKDINGK----EYYDGFSSVWLNVHGHR-KKELDDAIKKQLGK 75 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHH-HHSCCEEEEEEBTE--EEETTSC----EEEETTHHHHTCSSCBS-CHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCCCCC-CCCCCEEEEEEECE--EEECCCC----EEEECCCCHHHCCCCCC-CHHHHHHHHHHHHH
T ss_conf 78876441135664455545-67882699832088--9989999----99988855651407889-89999999999974
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 15558999999679999999983119998661999078678999999999998530244100024877645555208999
Q 003472 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (817)
Q Consensus 432 ~~~~~~~~~~~~~~~eLae~L~~~~~~~~~~~v~f~~SGseAvE~ALKlA~r~~t~~~G~~~~~~~~~~~~~~~r~~II~ 511 (817)
+.+.....+.++...+++++|++..+.+ .++++|++||+|||+.|+|++ +.+....|. +++.+||+
T Consensus 76 ~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~------------~~~~~vi~ 141 (448)
T 3dod_A 76 IAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGK------------PEKQKFIA 141 (448)
T ss_dssp CSCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCHHHHHHHHHHHH-HHHHHHHCC------------CCCCEEEE
T ss_conf 6675566569999999999999757888-788999195499999999999-999986298------------77888999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 81874478642111248998877677887568765558984222476212148711110002344444567301221026
Q 003472 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (817)
Q Consensus 512 ~~gsyHG~t~galslt~~~~~r~~~~~~~~~~~g~~~~~p~~~~~~~~~~v~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (817)
++++|||.+.+++++++...++..+ . + ...++.+++.|++++.. . .
T Consensus 142 ~~~~yhg~~~~~~~~~~~~~~~~~~--------~----~----~~~~~~~~~~~~~~~~~-~-----------------~ 187 (448)
T 3dod_A 142 MKNGYHGDTIGAVSVGSIELFHHVY--------G----P----LMFESYKAPIPYVYRSE-S-----------------G 187 (448)
T ss_dssp EC---------------------------------------------CEEECCCCCTTSS-S-----------------C
T ss_pred ECCCCCCCCHHHHHHCCCCCCCCCC--------C----C----CCCCCEEECCCCCCCCC-C-----------------C
T ss_conf 8998788538888755981003455--------6----7----78996682897544687-6-----------------5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 911689999999999974199988888079999945334-6897312898899999999762399399851100656556
Q 003472 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (817)
Q Consensus 592 d~~~~~~~~~~~le~~L~~~~~~~~~~~iAAiIvEPV~q-g~gG~~~~~~~fl~~Lr~lc~~~gilLI~DEV~TGfGRtG 670 (817)
+.........+.+++.++. +++++++||+||+ + +++|+++++++|+++|+++|++||+++|+|||||||||+|
T Consensus 188 ~~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g 261 (448)
T 3dod_A 188 DPDECRDQCLRELAQLLEE-----HHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG 261 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHH-----CCCCEEEEEEECC-CCCCCCEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 4024568999999999973-----8997799999576-158898254987999999999998099899951100898544
Q ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHCCC-CCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 31023000899962200433478887511898225777411288-86530000158998789999999999995196701
Q 003472 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD-SKLKALLHGHSYSAHALGCAAAAKSIKWFKDPQTN 749 (817)
Q Consensus 671 ~~~a~e~~gv~PDIitlgK~LggGy~Plsavl~~~~i~e~~~~~-~~~~~~~h~~T~~gnPla~Aaala~L~ile~~~~~ 749 (817)
++|+++++++.||++|+||++++||+|+|++++++++++.+... .....+.|++||++||++|++++++|+.++++++.
T Consensus 262 ~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 262 KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 02145542999878975122468867538999889999876431356776653688985889999999999998605499
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCCCC---C--HHHHHHHHHHHCCCC
Q ss_conf 208999999999999999999873999241975516999997107977771---1--299999999982989
Q 003472 750 HNIIPERRILRELWDLELIQQISSHRTVQRVVALGTLCAIELQAAGCNAGY---C--LIELFLYNFLTTGMH 816 (817)
Q Consensus 750 ~~l~~~~~~l~~~l~~~l~~~~~~~p~I~~VrG~Glm~gIel~~~~~~~~~---~--~~~~~~~~~l~~G~~ 816 (817)
+++. ..++++++.+.+ +..++.+.++++.|+++++++.++...... . ....+...++++||+
T Consensus 342 ~~~~----~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 408 (448)
T 3dod_A 342 EQVA----EKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGML 408 (448)
T ss_dssp HHHH----HHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEE
T ss_pred HHHH----HHHHHHHHHHHH-HHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 9999----999999999998-851997479986517999997667443566633457999999999978948
Done!