Query 003473
Match_columns 817
No_of_seqs 740 out of 4099
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 7E-108 2E-112 935.4 48.1 569 181-788 23-594 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 1E-105 2E-110 881.9 43.3 439 325-785 296-735 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 1.4E-99 3E-104 878.9 55.2 462 325-800 303-765 (774)
4 CHL00176 ftsH cell division pr 100.0 7.3E-93 1.6E-97 830.8 55.0 574 178-785 47-626 (638)
5 PRK10733 hflB ATP-dependent me 100.0 3.3E-88 7.2E-93 797.3 58.6 563 182-785 31-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 2E-80 4.4E-85 713.1 47.9 456 316-783 38-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 9.7E-58 2.1E-62 488.1 26.6 254 324-580 142-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.6E-56 3.4E-61 547.4 25.5 319 356-706 1620-1995(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.8E-53 6.1E-58 480.7 28.3 323 243-578 323-676 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.8E-51 8.3E-56 457.0 32.1 334 243-580 332-773 (802)
11 KOG0729 26S proteasome regulat 100.0 2E-45 4.4E-50 378.9 19.0 258 324-584 168-426 (435)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 8.5E-45 1.8E-49 406.2 22.0 228 326-559 183-414 (802)
13 KOG0727 26S proteasome regulat 100.0 4.2E-44 9E-49 367.0 22.9 251 325-578 147-398 (408)
14 KOG0728 26S proteasome regulat 100.0 6.1E-44 1.3E-48 365.4 21.7 251 325-578 139-390 (404)
15 KOG0736 Peroxisome assembly fa 100.0 1.6E-43 3.6E-48 404.0 24.6 250 324-578 663-934 (953)
16 KOG0652 26S proteasome regulat 100.0 1.2E-43 2.6E-48 365.0 19.6 251 325-578 163-414 (424)
17 KOG0726 26S proteasome regulat 100.0 5.8E-44 1.2E-48 371.9 16.5 252 325-579 177-429 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 4.4E-43 9.6E-48 361.1 20.9 241 325-575 113-354 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-42 3.5E-47 372.9 21.1 245 326-578 205-471 (491)
20 PTZ00454 26S protease regulato 100.0 2.9E-41 6.2E-46 378.0 28.3 252 325-579 137-389 (398)
21 PRK03992 proteasome-activating 100.0 5.4E-40 1.2E-44 367.7 27.9 254 325-581 123-377 (389)
22 PF01434 Peptidase_M41: Peptid 100.0 1.7E-41 3.7E-46 350.8 13.6 212 565-781 1-213 (213)
23 COG0464 SpoVK ATPases of the A 100.0 1E-39 2.2E-44 375.7 25.5 249 323-575 232-482 (494)
24 PTZ00361 26 proteosome regulat 100.0 1.1E-39 2.3E-44 368.1 24.7 251 325-578 175-426 (438)
25 TIGR01243 CDC48 AAA family ATP 100.0 4.7E-39 1E-43 386.1 30.6 249 325-578 445-712 (733)
26 KOG0735 AAA+-type ATPase [Post 100.0 3.4E-39 7.4E-44 365.7 22.6 226 328-559 662-888 (952)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 4.7E-38 1E-42 359.4 25.5 244 327-578 222-465 (489)
28 TIGR01242 26Sp45 26S proteasom 100.0 2.5E-37 5.4E-42 343.2 27.2 249 325-576 114-363 (364)
29 KOG0739 AAA+-type ATPase [Post 100.0 5.9E-39 1.3E-43 335.4 12.5 229 323-559 123-353 (439)
30 KOG0737 AAA+-type ATPase [Post 100.0 1.1E-37 2.4E-42 335.8 20.1 229 323-559 82-314 (386)
31 KOG0651 26S proteasome regulat 100.0 9.7E-38 2.1E-42 328.5 13.6 249 326-577 125-374 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 1.6E-35 3.4E-40 338.7 25.3 266 323-592 172-494 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-32 3.8E-37 311.9 21.2 236 328-577 180-417 (693)
34 KOG0732 AAA+-type ATPase conta 100.0 1.6E-32 3.4E-37 327.1 18.7 249 326-579 258-528 (1080)
35 PLN00020 ribulose bisphosphate 100.0 4.8E-32 1E-36 295.0 20.7 260 328-606 110-393 (413)
36 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-31 2.3E-36 322.8 25.3 245 327-577 172-436 (733)
37 KOG0741 AAA+-type ATPase [Post 100.0 2.8E-32 6.1E-37 301.9 14.3 249 327-577 213-491 (744)
38 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-30 3.2E-35 289.2 15.8 228 324-559 144-374 (428)
39 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-21 3.5E-26 210.6 21.2 212 332-557 22-255 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 1.3E-21 2.9E-26 208.1 19.9 212 331-557 4-239 (261)
41 KOG0742 AAA+-type ATPase [Post 99.9 1.8E-21 3.8E-26 211.3 19.0 237 328-576 350-612 (630)
42 KOG0743 AAA+-type ATPase [Post 99.9 1.2E-21 2.5E-26 217.2 16.3 207 329-548 197-412 (457)
43 TIGR02880 cbbX_cfxQ probable R 99.9 3.3E-21 7.2E-26 207.9 18.9 211 334-558 23-255 (284)
44 PF00004 AAA: ATPase family as 99.9 2E-21 4.4E-26 182.3 12.9 130 369-503 1-132 (132)
45 COG0466 Lon ATP-dependent Lon 99.8 9.5E-20 2.1E-24 210.1 15.9 211 332-560 322-545 (782)
46 PRK00080 ruvB Holliday junctio 99.8 5.3E-19 1.2E-23 194.1 19.1 219 326-575 18-249 (328)
47 TIGR00635 ruvB Holliday juncti 99.8 7.8E-19 1.7E-23 189.9 20.0 211 331-575 2-228 (305)
48 PF05496 RuvB_N: Holliday junc 99.8 3.4E-19 7.3E-24 184.2 15.4 196 324-553 15-226 (233)
49 KOG0744 AAA+-type ATPase [Post 99.8 5.6E-19 1.2E-23 188.0 12.3 239 332-574 141-412 (423)
50 COG0464 SpoVK ATPases of the A 99.8 1.3E-17 2.8E-22 192.7 20.9 219 352-578 4-228 (494)
51 COG2256 MGS1 ATPase related to 99.8 5.1E-18 1.1E-22 185.9 16.2 209 325-577 16-239 (436)
52 TIGR00763 lon ATP-dependent pr 99.8 5.8E-18 1.3E-22 205.2 17.5 164 333-517 320-505 (775)
53 KOG0736 Peroxisome assembly fa 99.8 1.2E-17 2.6E-22 193.0 18.8 204 364-576 429-653 (953)
54 KOG0735 AAA+-type ATPase [Post 99.8 1.6E-17 3.4E-22 190.4 18.7 232 333-577 408-649 (952)
55 TIGR02639 ClpA ATP-dependent C 99.8 7.6E-18 1.6E-22 203.1 17.0 224 328-577 177-430 (731)
56 TIGR02902 spore_lonB ATP-depen 99.8 1.1E-17 2.4E-22 194.8 16.6 218 322-575 54-331 (531)
57 COG2255 RuvB Holliday junction 99.7 3.6E-17 7.7E-22 172.4 18.3 217 327-577 20-252 (332)
58 PRK14956 DNA polymerase III su 99.7 1.4E-16 3E-21 181.4 19.5 213 324-573 9-243 (484)
59 KOG2004 Mitochondrial ATP-depe 99.7 3E-17 6.6E-22 188.5 14.2 174 333-518 411-597 (906)
60 PRK14962 DNA polymerase III su 99.7 1.5E-16 3.2E-21 182.6 19.4 207 325-574 6-240 (472)
61 PRK04195 replication factor C 99.7 3.1E-16 6.8E-21 180.9 20.3 210 325-573 6-222 (482)
62 PRK11034 clpA ATP-dependent Cl 99.7 2.6E-16 5.6E-21 189.0 18.7 221 331-577 184-434 (758)
63 PRK00149 dnaA chromosomal repl 99.7 3.7E-16 8E-21 178.8 18.3 222 327-577 116-350 (450)
64 PRK14961 DNA polymerase III su 99.7 7E-16 1.5E-20 172.0 19.9 213 324-573 7-241 (363)
65 PRK12323 DNA polymerase III su 99.7 2.1E-16 4.6E-21 183.9 15.8 210 325-571 8-244 (700)
66 PRK07003 DNA polymerase III su 99.7 4.1E-16 9E-21 183.5 18.0 211 324-571 7-239 (830)
67 PRK14960 DNA polymerase III su 99.7 6.6E-16 1.4E-20 180.2 19.1 206 325-573 7-240 (702)
68 PRK06645 DNA polymerase III su 99.7 1E-15 2.2E-20 176.7 20.4 216 324-573 12-253 (507)
69 PRK13342 recombination factor 99.7 8.1E-16 1.8E-20 174.2 18.7 203 326-576 5-219 (413)
70 TIGR00362 DnaA chromosomal rep 99.7 1.2E-15 2.5E-20 172.4 19.4 222 328-577 105-338 (405)
71 TIGR02928 orc1/cdc6 family rep 99.7 5.9E-15 1.3E-19 163.4 24.4 223 330-576 12-274 (365)
72 PRK14958 DNA polymerase III su 99.7 8.8E-16 1.9E-20 177.8 18.1 207 324-573 7-241 (509)
73 PRK06893 DNA replication initi 99.7 2E-15 4.4E-20 158.0 18.9 212 327-573 10-227 (229)
74 PRK14088 dnaA chromosomal repl 99.7 1.3E-15 2.7E-20 174.0 17.7 224 327-577 99-333 (440)
75 PRK00411 cdc6 cell division co 99.7 8.9E-15 1.9E-19 163.7 24.2 226 329-577 26-283 (394)
76 PRK07994 DNA polymerase III su 99.7 2.1E-15 4.7E-20 177.6 19.8 212 325-573 8-241 (647)
77 PRK14949 DNA polymerase III su 99.7 2.3E-15 5E-20 180.1 20.1 197 324-553 7-225 (944)
78 PRK08691 DNA polymerase III su 99.7 1.8E-15 3.8E-20 178.0 17.9 212 325-573 8-241 (709)
79 PRK10787 DNA-binding ATP-depen 99.7 1.3E-15 2.9E-20 184.0 17.3 164 333-518 322-507 (784)
80 PRK14964 DNA polymerase III su 99.7 2.6E-15 5.7E-20 172.3 18.7 205 326-573 6-238 (491)
81 PRK14963 DNA polymerase III su 99.7 4.7E-15 1E-19 171.5 20.7 206 324-573 5-237 (504)
82 PRK12402 replication factor C 99.6 6.8E-15 1.5E-19 160.7 20.7 211 325-574 7-247 (337)
83 TIGR03345 VI_ClpV1 type VI sec 99.6 2.6E-15 5.6E-20 183.2 18.0 218 328-572 182-427 (852)
84 PRK05563 DNA polymerase III su 99.6 5.9E-15 1.3E-19 172.9 20.3 212 325-573 8-241 (559)
85 PRK14951 DNA polymerase III su 99.6 5E-15 1.1E-19 174.1 19.6 212 325-573 8-246 (618)
86 TIGR03420 DnaA_homol_Hda DnaA 99.6 3.8E-15 8.3E-20 153.8 16.2 206 328-573 10-225 (226)
87 PLN03025 replication factor C 99.6 3.7E-15 8E-20 163.3 16.8 203 325-572 5-219 (319)
88 PRK13341 recombination factor 99.6 5.2E-15 1.1E-19 177.2 18.9 214 323-576 18-247 (725)
89 TIGR02397 dnaX_nterm DNA polym 99.6 7.8E-15 1.7E-19 161.7 18.4 207 325-574 6-240 (355)
90 PHA02544 44 clamp loader, smal 99.6 1.2E-14 2.7E-19 158.0 19.7 207 324-571 12-226 (316)
91 KOG2028 ATPase related to the 99.6 1.1E-14 2.3E-19 157.3 17.6 214 324-576 129-368 (554)
92 PRK14969 DNA polymerase III su 99.6 9.1E-15 2E-19 170.3 18.3 212 325-573 8-241 (527)
93 PRK08903 DnaA regulatory inact 99.6 1.8E-14 3.8E-19 149.9 17.9 203 327-574 12-224 (227)
94 PRK14086 dnaA chromosomal repl 99.6 1.7E-14 3.7E-19 168.3 19.6 221 327-577 282-516 (617)
95 PRK14957 DNA polymerase III su 99.6 1.9E-14 4.2E-19 167.2 19.3 212 325-573 8-241 (546)
96 PRK12422 chromosomal replicati 99.6 1.8E-14 4E-19 164.5 18.7 226 327-577 105-344 (445)
97 PRK14959 DNA polymerase III su 99.6 1.4E-14 3.1E-19 169.6 17.7 207 324-573 7-241 (624)
98 PRK08084 DNA replication initi 99.6 4.7E-14 1E-18 148.4 19.9 206 328-573 17-233 (235)
99 PRK07764 DNA polymerase III su 99.6 2E-14 4.3E-19 174.1 18.6 209 325-571 7-241 (824)
100 PRK14952 DNA polymerase III su 99.6 2.3E-14 5E-19 167.9 18.6 214 324-573 4-241 (584)
101 PRK14970 DNA polymerase III su 99.6 2.2E-14 4.8E-19 159.7 17.6 213 324-573 8-230 (367)
102 PTZ00112 origin recognition co 99.6 4.8E-14 1E-18 166.7 20.8 218 333-578 755-1008(1164)
103 PRK07133 DNA polymerase III su 99.6 3.2E-14 7E-19 168.8 19.5 213 324-573 9-240 (725)
104 PRK14965 DNA polymerase III su 99.6 2E-14 4.2E-19 169.2 17.7 211 325-572 8-240 (576)
105 PRK10865 protein disaggregatio 99.6 2E-14 4.3E-19 175.9 18.1 166 328-519 173-356 (857)
106 PRK08451 DNA polymerase III su 99.6 6.7E-14 1.5E-18 162.1 20.1 212 324-572 5-238 (535)
107 CHL00095 clpC Clp protease ATP 99.6 2.2E-14 4.7E-19 175.3 16.9 201 329-556 175-401 (821)
108 PRK09111 DNA polymerase III su 99.6 6.7E-14 1.5E-18 164.7 20.2 213 324-573 15-254 (598)
109 PRK05896 DNA polymerase III su 99.6 3.3E-14 7.2E-19 165.8 17.2 212 324-572 7-240 (605)
110 PRK14953 DNA polymerase III su 99.6 7.7E-14 1.7E-18 161.0 19.4 212 325-573 8-241 (486)
111 TIGR03346 chaperone_ClpB ATP-d 99.6 6E-14 1.3E-18 172.0 19.1 203 328-557 168-397 (852)
112 PRK07940 DNA polymerase III su 99.6 4.9E-14 1.1E-18 158.6 16.9 190 331-548 3-214 (394)
113 PRK05342 clpX ATP-dependent pr 99.6 5.5E-14 1.2E-18 159.0 17.2 181 331-514 68-322 (412)
114 PRK06647 DNA polymerase III su 99.6 8.3E-14 1.8E-18 163.1 19.2 212 325-573 8-241 (563)
115 KOG0989 Replication factor C, 99.6 2.8E-14 6E-19 152.1 13.4 195 323-554 26-236 (346)
116 PRK14955 DNA polymerase III su 99.6 6E-14 1.3E-18 158.4 16.9 217 324-573 7-254 (397)
117 PRK06305 DNA polymerase III su 99.6 1.2E-13 2.6E-18 158.3 19.1 213 324-573 8-243 (451)
118 PRK08727 hypothetical protein; 99.5 4.2E-13 9.2E-18 141.0 20.2 208 328-575 14-230 (233)
119 PRK00440 rfc replication facto 99.5 3.5E-13 7.7E-18 145.9 20.0 205 325-574 9-224 (319)
120 PRK05642 DNA replication initi 99.5 2.9E-13 6.4E-18 142.3 18.4 180 366-573 45-232 (234)
121 COG2812 DnaX DNA polymerase II 99.5 1E-13 2.2E-18 159.2 15.5 198 326-556 9-228 (515)
122 PRK14948 DNA polymerase III su 99.5 3.2E-13 6.8E-18 159.9 20.0 209 325-571 8-240 (620)
123 PRK14087 dnaA chromosomal repl 99.5 2.3E-13 5E-18 155.8 18.2 192 366-576 141-348 (450)
124 PRK14950 DNA polymerase III su 99.5 3.9E-13 8.3E-18 158.7 19.8 213 324-573 7-242 (585)
125 PRK14954 DNA polymerase III su 99.5 3.4E-13 7.4E-18 159.1 19.2 216 325-573 8-254 (620)
126 COG1224 TIP49 DNA helicase TIP 99.5 5.6E-13 1.2E-17 144.3 18.8 98 474-575 322-431 (450)
127 PF00308 Bac_DnaA: Bacterial d 99.5 2.8E-13 6E-18 141.3 15.1 201 328-556 3-216 (219)
128 TIGR00390 hslU ATP-dependent p 99.5 3.5E-13 7.5E-18 151.0 16.6 175 334-513 13-342 (441)
129 PF05673 DUF815: Protein of un 99.5 8E-13 1.7E-17 138.7 18.0 195 326-551 20-244 (249)
130 PRK06620 hypothetical protein; 99.5 4E-13 8.7E-18 139.6 15.4 196 327-573 10-213 (214)
131 TIGR02903 spore_lon_C ATP-depe 99.5 1.7E-12 3.6E-17 154.0 20.5 221 325-575 146-429 (615)
132 TIGR00382 clpX endopeptidase C 99.5 6.3E-13 1.4E-17 150.0 16.0 179 334-515 78-329 (413)
133 PRK13407 bchI magnesium chelat 99.5 3.2E-13 7E-18 148.9 13.3 220 328-577 3-307 (334)
134 PRK11034 clpA ATP-dependent Cl 99.5 8.5E-13 1.8E-17 159.0 17.7 165 334-518 459-667 (758)
135 TIGR02640 gas_vesic_GvpN gas v 99.5 1.3E-12 2.8E-17 139.6 17.1 187 367-578 22-259 (262)
136 PRK05201 hslU ATP-dependent pr 99.4 3.3E-13 7.1E-18 151.2 11.7 176 334-514 16-345 (443)
137 TIGR02639 ClpA ATP-dependent C 99.4 2E-12 4.3E-17 156.4 17.9 166 333-519 454-664 (731)
138 COG0593 DnaA ATPase involved i 99.4 4.3E-12 9.3E-17 142.3 18.8 229 326-581 80-318 (408)
139 PRK14971 DNA polymerase III su 99.4 4.4E-12 9.6E-17 150.2 19.8 212 325-573 9-243 (614)
140 COG1474 CDC6 Cdc6-related prot 99.4 1.2E-11 2.6E-16 138.2 21.5 219 333-576 17-265 (366)
141 CHL00081 chlI Mg-protoporyphyr 99.4 2.1E-12 4.5E-17 143.1 13.5 221 328-578 12-324 (350)
142 PRK09087 hypothetical protein; 99.4 3E-12 6.5E-17 134.2 13.4 171 368-575 46-221 (226)
143 TIGR02030 BchI-ChlI magnesium 99.4 4.6E-12 9.9E-17 140.0 15.0 216 331-578 2-311 (337)
144 TIGR02442 Cob-chelat-sub cobal 99.3 1.1E-11 2.4E-16 147.7 16.0 215 331-578 2-306 (633)
145 cd00009 AAA The AAA+ (ATPases 99.3 1.9E-11 4E-16 114.4 13.8 124 365-502 18-150 (151)
146 TIGR03345 VI_ClpV1 type VI sec 99.3 2.3E-11 5E-16 148.9 17.7 196 333-553 566-827 (852)
147 TIGR01650 PD_CobS cobaltochela 99.3 9.1E-12 2E-16 136.3 12.7 137 366-517 64-233 (327)
148 COG0714 MoxR-like ATPases [Gen 99.3 9.2E-11 2E-15 129.3 17.6 130 367-517 44-202 (329)
149 PF06068 TIP49: TIP49 C-termin 99.3 8.6E-11 1.9E-15 129.3 16.3 67 331-404 22-90 (398)
150 TIGR00764 lon_rel lon-related 99.3 2.4E-10 5.2E-15 135.5 21.0 104 471-577 267-392 (608)
151 PRK09112 DNA polymerase III su 99.3 1.3E-10 2.9E-15 129.2 17.3 190 327-551 17-243 (351)
152 TIGR03346 chaperone_ClpB ATP-d 99.2 1.1E-10 2.3E-15 143.7 18.0 202 333-555 565-824 (852)
153 smart00350 MCM minichromosome 99.2 9.4E-11 2E-15 136.5 16.2 224 333-576 203-504 (509)
154 CHL00095 clpC Clp protease ATP 99.2 1.3E-10 2.8E-15 142.5 18.1 166 333-519 509-734 (821)
155 PRK10865 protein disaggregatio 99.2 1.5E-10 3.3E-15 142.1 18.7 167 332-519 567-781 (857)
156 TIGR00368 Mg chelatase-related 99.2 1.3E-10 2.7E-15 134.7 16.3 211 330-574 189-497 (499)
157 COG2607 Predicted ATPase (AAA+ 99.2 4.5E-10 9.7E-15 116.9 17.9 197 325-552 52-277 (287)
158 PF05621 TniB: Bacterial TniB 99.2 2E-10 4.2E-15 124.2 15.9 221 331-571 32-284 (302)
159 smart00382 AAA ATPases associa 99.2 2.9E-11 6.3E-16 111.6 8.0 127 366-504 2-147 (148)
160 COG0542 clpA ATP-binding subun 99.2 5.3E-11 1.2E-15 141.7 12.1 161 333-519 491-707 (786)
161 PRK13531 regulatory ATPase Rav 99.2 4.6E-10 1E-14 128.3 18.5 214 333-579 20-286 (498)
162 PRK07471 DNA polymerase III su 99.2 2.2E-10 4.8E-15 128.2 15.5 186 327-549 13-239 (365)
163 TIGR02329 propionate_PrpR prop 99.2 5.8E-11 1.3E-15 138.4 11.1 213 329-570 208-464 (526)
164 PRK15424 propionate catabolism 99.2 4.9E-11 1.1E-15 139.0 10.2 211 330-568 216-477 (538)
165 COG0542 clpA ATP-binding subun 99.2 3.6E-10 7.8E-15 134.8 17.5 209 324-558 161-395 (786)
166 KOG1942 DNA helicase, TBP-inte 99.2 7.9E-10 1.7E-14 117.4 17.6 100 473-576 326-438 (456)
167 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.5E-14 116.1 17.9 190 367-575 44-265 (269)
168 TIGR00602 rad24 checkpoint pro 99.1 6.5E-10 1.4E-14 131.6 16.8 257 323-606 74-388 (637)
169 PRK05564 DNA polymerase III su 99.1 4.1E-10 8.9E-15 123.2 14.0 170 330-539 1-182 (313)
170 PHA02244 ATPase-like protein 99.1 1.2E-09 2.6E-14 121.2 17.6 124 367-508 120-265 (383)
171 COG3829 RocR Transcriptional r 99.1 7.7E-11 1.7E-15 134.3 7.5 213 327-570 239-491 (560)
172 TIGR01817 nifA Nif-specific re 99.1 1.5E-10 3.3E-15 135.5 9.4 209 327-570 190-439 (534)
173 PRK07399 DNA polymerase III su 99.1 1.2E-09 2.5E-14 120.1 15.5 183 331-550 2-223 (314)
174 PRK11331 5-methylcytosine-spec 99.1 7.5E-10 1.6E-14 125.7 14.0 155 332-503 174-357 (459)
175 TIGR00678 holB DNA polymerase 99.1 1.2E-09 2.6E-14 110.6 13.8 145 363-539 11-183 (188)
176 PRK09862 putative ATP-dependen 99.1 1.3E-09 2.8E-14 126.2 15.6 210 330-574 188-490 (506)
177 KOG1969 DNA replication checkp 99.1 4.2E-09 9.2E-14 122.8 19.6 209 324-560 262-519 (877)
178 PF01078 Mg_chelatase: Magnesi 99.1 1E-10 2.2E-15 120.4 5.9 119 331-481 1-158 (206)
179 PRK05022 anaerobic nitric oxid 99.1 3.8E-10 8.3E-15 131.5 11.3 198 331-557 185-421 (509)
180 COG1219 ClpX ATP-dependent pro 99.1 7.9E-10 1.7E-14 118.8 12.4 127 335-467 63-203 (408)
181 PRK10820 DNA-binding transcrip 99.1 4.3E-10 9.2E-15 131.4 11.4 210 328-569 199-447 (520)
182 PF07728 AAA_5: AAA domain (dy 99.1 1.7E-10 3.7E-15 110.7 6.3 113 368-495 1-139 (139)
183 PRK11388 DNA-binding transcrip 99.1 5E-10 1.1E-14 133.8 11.2 213 329-573 321-568 (638)
184 PRK04132 replication factor C 99.1 1.6E-09 3.5E-14 131.4 15.5 171 369-572 567-750 (846)
185 TIGR02031 BchD-ChlD magnesium 99.1 2E-09 4.4E-14 127.4 16.0 192 367-578 17-260 (589)
186 PRK11608 pspF phage shock prot 99.1 7.1E-10 1.5E-14 122.3 11.5 196 331-556 4-240 (326)
187 COG0470 HolB ATPase involved i 99.1 1.6E-09 3.4E-14 117.5 13.8 146 333-510 1-174 (325)
188 COG1220 HslU ATP-dependent pro 99.1 1E-09 2.2E-14 118.6 11.9 83 427-514 252-346 (444)
189 COG1221 PspF Transcriptional r 99.0 3.5E-10 7.5E-15 126.8 8.5 198 328-557 73-310 (403)
190 TIGR02974 phageshock_pspF psp 99.0 6.3E-10 1.4E-14 122.9 10.4 193 335-556 1-233 (329)
191 COG0606 Predicted ATPase with 99.0 2.9E-10 6.2E-15 128.3 7.3 212 329-574 175-483 (490)
192 PRK15429 formate hydrogenlyase 99.0 1.7E-09 3.6E-14 130.4 14.2 199 329-556 372-609 (686)
193 KOG0991 Replication factor C, 99.0 1.1E-09 2.4E-14 113.3 9.7 205 323-572 17-233 (333)
194 KOG2680 DNA helicase TIP49, TB 99.0 1.1E-08 2.4E-13 109.2 16.7 92 482-577 339-430 (454)
195 PRK08058 DNA polymerase III su 99.0 5.1E-09 1.1E-13 115.8 14.0 154 331-515 3-180 (329)
196 smart00763 AAA_PrkA PrkA AAA d 99.0 1.2E-08 2.6E-13 113.3 15.7 83 332-421 49-144 (361)
197 PF07724 AAA_2: AAA domain (Cd 99.0 1.3E-09 2.7E-14 109.9 7.4 112 366-483 3-131 (171)
198 PRK05707 DNA polymerase III su 98.9 8.4E-09 1.8E-13 114.0 13.5 135 363-517 19-178 (328)
199 KOG0741 AAA+-type ATPase [Post 98.9 7.1E-09 1.5E-13 117.2 11.7 156 347-515 525-684 (744)
200 COG3604 FhlA Transcriptional r 98.9 2.9E-09 6.4E-14 120.3 8.4 203 328-556 218-456 (550)
201 COG2204 AtoC Response regulato 98.9 6.2E-09 1.3E-13 118.7 10.9 205 330-569 138-384 (464)
202 PTZ00111 DNA replication licen 98.9 1.4E-08 3.1E-13 123.0 14.3 160 334-515 451-655 (915)
203 PRK08116 hypothetical protein; 98.8 1.5E-08 3.2E-13 109.1 11.5 124 365-506 113-251 (268)
204 TIGR02915 PEP_resp_reg putativ 98.8 7E-09 1.5E-13 118.3 9.1 207 331-569 137-382 (445)
205 PRK13765 ATP-dependent proteas 98.8 5.8E-08 1.3E-12 115.5 14.6 102 471-575 276-399 (637)
206 PF00158 Sigma54_activat: Sigm 98.8 8.6E-09 1.9E-13 103.5 6.5 123 335-482 1-144 (168)
207 PRK06964 DNA polymerase III su 98.8 3.8E-08 8.3E-13 109.3 11.8 135 362-516 17-203 (342)
208 PRK10923 glnG nitrogen regulat 98.7 7E-08 1.5E-12 111.0 12.4 210 331-572 136-384 (469)
209 COG1239 ChlI Mg-chelatase subu 98.7 1.2E-07 2.5E-12 106.2 13.5 160 329-518 13-233 (423)
210 KOG2227 Pre-initiation complex 98.7 3.7E-07 8.1E-12 102.8 17.6 207 333-561 150-384 (529)
211 PRK11361 acetoacetate metaboli 98.7 7.6E-08 1.7E-12 110.0 12.6 209 331-571 141-388 (457)
212 PRK07952 DNA replication prote 98.7 1E-07 2.2E-12 101.3 12.6 133 327-482 66-205 (244)
213 PF13177 DNA_pol3_delta2: DNA 98.7 3.7E-08 8E-13 98.3 8.5 136 337-503 1-160 (162)
214 KOG0745 Putative ATP-dependent 98.7 4.5E-08 9.7E-13 108.9 9.9 97 367-466 227-331 (564)
215 PRK12377 putative replication 98.7 1.1E-07 2.4E-12 101.3 12.4 101 366-482 101-206 (248)
216 KOG0990 Replication factor C, 98.7 2.5E-08 5.4E-13 107.7 7.4 166 323-522 31-208 (360)
217 KOG1514 Origin recognition com 98.7 5.1E-07 1.1E-11 105.7 17.6 220 335-578 398-657 (767)
218 PRK06871 DNA polymerase III su 98.7 4E-07 8.6E-12 100.6 15.6 134 363-516 21-178 (325)
219 PRK08939 primosomal protein Dn 98.7 1.7E-07 3.7E-12 102.7 12.7 132 329-482 123-261 (306)
220 PF01637 Arch_ATPase: Archaeal 98.6 2.8E-07 6.1E-12 94.2 11.8 184 336-546 2-232 (234)
221 PRK06526 transposase; Provisio 98.6 1.3E-07 2.8E-12 101.1 9.0 101 365-482 97-201 (254)
222 PRK13406 bchD magnesium chelat 98.6 2.7E-07 5.8E-12 109.1 12.3 191 367-578 26-252 (584)
223 PRK15115 response regulator Gl 98.6 5.2E-07 1.1E-11 103.0 13.7 206 334-571 135-379 (444)
224 KOG2035 Replication factor C, 98.6 4.8E-07 1E-11 96.2 12.2 180 327-539 7-220 (351)
225 PRK08769 DNA polymerase III su 98.6 5.7E-07 1.2E-11 99.2 13.4 133 363-515 23-183 (319)
226 TIGR01818 ntrC nitrogen regula 98.6 1.9E-07 4.1E-12 107.1 10.0 210 332-573 133-381 (463)
227 PF03215 Rad17: Rad17 cell cyc 98.6 1.2E-06 2.6E-11 102.3 16.5 209 324-557 10-269 (519)
228 PRK08181 transposase; Validate 98.6 3.6E-07 7.9E-12 98.5 11.3 100 366-482 106-209 (269)
229 PF07726 AAA_3: ATPase family 98.5 1.5E-08 3.3E-13 97.2 0.4 111 368-495 1-129 (131)
230 PRK07993 DNA polymerase III su 98.5 4.5E-07 9.7E-12 100.6 11.6 133 363-515 21-178 (334)
231 KOG1051 Chaperone HSP104 and r 98.5 5.7E-07 1.2E-11 109.2 12.5 128 333-482 562-711 (898)
232 COG1484 DnaC DNA replication p 98.5 9.1E-07 2E-11 94.7 12.1 73 365-438 104-180 (254)
233 PRK10365 transcriptional regul 98.5 3.2E-07 7E-12 104.3 8.4 202 334-570 140-383 (441)
234 PRK06090 DNA polymerase III su 98.5 1.5E-06 3.2E-11 95.8 12.8 134 362-515 21-178 (319)
235 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3.1E-11 83.1 10.9 118 367-508 3-126 (128)
236 KOG0478 DNA replication licens 98.4 1.5E-06 3.2E-11 101.4 12.8 161 334-507 430-616 (804)
237 PRK06921 hypothetical protein; 98.4 1.9E-06 4.1E-11 92.8 12.9 69 365-436 116-188 (266)
238 PRK06835 DNA replication prote 98.4 1.3E-06 2.7E-11 96.9 11.8 69 367-437 184-258 (329)
239 PF14532 Sigma54_activ_2: Sigm 98.4 2E-07 4.3E-12 90.0 4.7 81 336-440 1-84 (138)
240 PRK09183 transposase/IS protei 98.4 8.9E-07 1.9E-11 94.9 10.1 73 365-438 101-177 (259)
241 PF13401 AAA_22: AAA domain; P 98.4 9.3E-07 2E-11 83.2 8.8 98 366-479 4-125 (131)
242 COG1241 MCM2 Predicted ATPase 98.4 8.8E-07 1.9E-11 105.4 10.0 223 332-577 285-593 (682)
243 PRK08699 DNA polymerase III su 98.4 1.1E-06 2.3E-11 97.3 9.9 133 363-515 18-183 (325)
244 PF01695 IstB_IS21: IstB-like 98.4 6.3E-07 1.4E-11 90.9 7.0 70 365-436 46-119 (178)
245 PF00493 MCM: MCM2/3/5 family 98.4 1.4E-07 3.1E-12 104.5 1.9 216 334-575 25-325 (331)
246 KOG0480 DNA replication licens 98.3 5.5E-06 1.2E-10 96.2 12.5 221 332-575 344-642 (764)
247 KOG1970 Checkpoint RAD17-RFC c 98.2 3.9E-05 8.4E-10 88.3 17.8 207 324-556 73-320 (634)
248 PF05729 NACHT: NACHT domain 98.2 1.4E-05 3.1E-10 77.5 12.1 142 368-519 2-165 (166)
249 PF12775 AAA_7: P-loop contain 98.2 6.9E-06 1.5E-10 88.8 10.7 139 366-519 33-195 (272)
250 PF03969 AFG1_ATPase: AFG1-lik 98.2 7.2E-06 1.6E-10 92.0 11.0 142 363-533 59-207 (362)
251 cd01120 RecA-like_NTPases RecA 98.2 9E-06 2E-10 78.2 10.0 110 369-483 2-138 (165)
252 PLN03210 Resistant to P. syrin 98.1 1.7E-05 3.7E-10 101.2 13.4 179 328-541 179-389 (1153)
253 TIGR02237 recomb_radB DNA repa 98.0 1.6E-05 3.5E-10 81.6 9.2 113 364-480 10-148 (209)
254 KOG0482 DNA replication licens 98.0 1.4E-05 3.1E-10 90.6 9.1 233 333-575 342-637 (721)
255 COG3283 TyrR Transcriptional r 98.0 2.5E-05 5.4E-10 85.8 10.3 202 328-556 199-432 (511)
256 PF00931 NB-ARC: NB-ARC domain 98.0 7E-05 1.5E-09 80.1 12.6 174 344-548 4-202 (287)
257 COG3267 ExeA Type II secretory 98.0 0.00025 5.4E-09 75.4 16.1 185 369-570 54-267 (269)
258 COG3284 AcoR Transcriptional a 97.9 1.7E-05 3.7E-10 92.7 7.2 206 336-573 316-554 (606)
259 PRK05917 DNA polymerase III su 97.8 5.9E-05 1.3E-09 82.2 9.3 122 363-504 16-154 (290)
260 cd01124 KaiC KaiC is a circadi 97.8 0.00014 2.9E-09 72.9 11.1 102 369-482 2-140 (187)
261 PRK07276 DNA polymerase III su 97.8 0.00026 5.6E-09 77.3 13.8 129 363-514 21-172 (290)
262 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00016 3.5E-09 76.5 11.8 136 366-522 32-182 (231)
263 KOG0477 DNA replication licens 97.8 0.00015 3.4E-09 84.2 12.1 169 334-518 450-651 (854)
264 TIGR01618 phage_P_loop phage n 97.8 5.5E-05 1.2E-09 79.5 7.9 74 364-439 10-95 (220)
265 PRK05818 DNA polymerase III su 97.8 0.00049 1.1E-08 73.9 14.9 121 364-504 5-147 (261)
266 KOG1051 Chaperone HSP104 and r 97.7 0.00023 4.9E-09 87.2 13.1 201 332-557 185-411 (898)
267 PRK07132 DNA polymerase III su 97.7 0.00052 1.1E-08 75.4 14.7 128 363-515 15-160 (299)
268 COG1485 Predicted ATPase [Gene 97.7 0.00014 3E-09 80.4 10.1 127 338-482 30-171 (367)
269 PF00910 RNA_helicase: RNA hel 97.7 8.5E-05 1.9E-09 69.0 7.2 23 369-391 1-23 (107)
270 PF06480 FtsH_ext: FtsH Extrac 97.7 1.2E-05 2.6E-10 73.4 1.0 31 178-208 25-55 (110)
271 KOG0481 DNA replication licens 97.7 0.00019 4E-09 82.0 10.6 208 334-552 332-581 (729)
272 PRK09361 radB DNA repair and r 97.7 0.00015 3.3E-09 75.4 9.4 116 362-480 19-160 (225)
273 KOG1968 Replication factor C, 97.7 5E-05 1.1E-09 93.1 6.5 207 325-555 312-535 (871)
274 TIGR02858 spore_III_AA stage I 97.7 0.00011 2.5E-09 79.4 8.3 113 367-502 112-256 (270)
275 PRK00131 aroK shikimate kinase 97.7 0.00015 3.3E-09 71.4 8.5 35 364-398 2-36 (175)
276 TIGR02012 tigrfam_recA protein 97.6 0.0002 4.4E-09 79.2 9.9 117 363-479 52-189 (321)
277 cd01394 radB RadB. The archaea 97.6 0.00036 7.8E-09 72.2 10.5 38 363-400 16-56 (218)
278 PRK11823 DNA repair protein Ra 97.6 0.00031 6.8E-09 81.1 11.0 79 362-440 76-171 (446)
279 PF13207 AAA_17: AAA domain; P 97.6 5.4E-05 1.2E-09 70.6 3.9 30 369-398 2-31 (121)
280 PRK08118 topology modulation p 97.5 0.00014 3E-09 73.0 6.4 32 368-399 3-34 (167)
281 PRK08533 flagellar accessory p 97.5 0.00072 1.6E-08 71.4 12.0 76 363-438 21-130 (230)
282 PHA00729 NTP-binding motif con 97.5 0.00018 3.8E-09 75.8 6.9 25 367-391 18-42 (226)
283 cd03283 ABC_MutS-like MutS-lik 97.5 0.00046 1E-08 71.3 9.8 104 367-485 26-151 (199)
284 COG1618 Predicted nucleotide k 97.5 0.00075 1.6E-08 67.4 10.6 26 365-390 4-29 (179)
285 COG1373 Predicted ATPase (AAA+ 97.5 0.0014 3E-08 74.7 14.4 135 368-523 39-186 (398)
286 cd01121 Sms Sms (bacterial rad 97.5 0.00047 1E-08 77.9 10.5 78 363-440 79-173 (372)
287 PRK15455 PrkA family serine pr 97.5 0.00012 2.6E-09 85.8 5.7 63 331-399 74-137 (644)
288 PRK06067 flagellar accessory p 97.5 0.00063 1.4E-08 71.4 10.4 39 362-400 21-62 (234)
289 PRK12723 flagellar biosynthesi 97.5 0.0011 2.3E-08 75.3 12.9 131 364-510 172-328 (388)
290 cd00983 recA RecA is a bacter 97.5 0.00042 9.1E-09 76.8 9.2 116 364-479 53-189 (325)
291 PRK00771 signal recognition pa 97.4 0.0016 3.5E-08 75.0 14.2 37 364-400 93-132 (437)
292 TIGR02688 conserved hypothetic 97.4 0.002 4.4E-08 73.4 14.6 62 366-439 209-274 (449)
293 PF05707 Zot: Zonular occluden 97.4 0.00017 3.8E-09 73.8 5.7 124 369-505 3-147 (193)
294 PF13671 AAA_33: AAA domain; P 97.4 0.00043 9.3E-09 66.2 7.9 36 369-406 2-37 (143)
295 PRK07261 topology modulation p 97.4 0.00024 5.3E-09 71.4 6.1 33 369-401 3-35 (171)
296 PRK14722 flhF flagellar biosyn 97.4 0.00033 7E-09 79.0 7.5 110 364-489 135-266 (374)
297 cd01128 rho_factor Transcripti 97.4 0.0019 4.2E-08 69.1 12.6 27 366-392 16-42 (249)
298 cd01131 PilT Pilus retraction 97.3 0.00067 1.4E-08 69.9 8.6 66 369-434 4-83 (198)
299 PRK09376 rho transcription ter 97.3 0.00085 1.8E-08 75.9 9.6 73 369-441 172-272 (416)
300 PF00437 T2SE: Type II/IV secr 97.3 0.00019 4.2E-09 76.8 4.3 100 327-436 98-208 (270)
301 PF06745 KaiC: KaiC; InterPro 97.3 0.0012 2.6E-08 68.8 9.9 108 362-480 15-159 (226)
302 KOG2170 ATPase of the AAA+ sup 97.3 0.003 6.5E-08 68.7 12.8 93 334-438 83-191 (344)
303 cd00046 DEXDc DEAD-like helica 97.3 0.0014 3.1E-08 60.3 9.0 24 367-390 1-24 (144)
304 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00084 1.8E-08 70.1 8.4 116 362-479 15-167 (235)
305 PRK06762 hypothetical protein; 97.3 0.001 2.3E-08 65.8 8.6 40 366-405 2-41 (166)
306 cd01393 recA_like RecA is a b 97.3 0.00072 1.6E-08 70.1 7.7 116 362-479 15-166 (226)
307 PRK14974 cell division protein 97.2 0.0015 3.2E-08 72.9 10.5 73 365-437 139-234 (336)
308 COG5271 MDN1 AAA ATPase contai 97.2 0.0016 3.4E-08 82.2 11.2 136 366-517 1543-1703(4600)
309 cd03216 ABC_Carb_Monos_I This 97.2 0.0007 1.5E-08 67.4 6.9 106 363-483 23-143 (163)
310 PRK04040 adenylate kinase; Pro 97.2 0.0041 8.9E-08 63.8 12.6 31 366-396 2-34 (188)
311 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0027 5.9E-08 67.1 11.6 40 362-401 17-59 (237)
312 COG1116 TauB ABC-type nitrate/ 97.2 0.00044 9.4E-09 73.4 5.5 22 368-389 31-52 (248)
313 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0025 5.5E-08 66.5 11.0 112 366-488 29-160 (213)
314 PRK13948 shikimate kinase; Pro 97.2 0.0013 2.7E-08 67.3 8.6 35 364-398 8-42 (182)
315 PF14516 AAA_35: AAA-like doma 97.2 0.019 4.2E-07 63.9 18.6 172 366-549 31-240 (331)
316 PRK10536 hypothetical protein; 97.2 0.0014 3.1E-08 70.3 9.2 45 331-389 53-97 (262)
317 PF07693 KAP_NTPase: KAP famil 97.2 0.0075 1.6E-07 65.9 15.0 28 364-391 18-45 (325)
318 cd00464 SK Shikimate kinase (S 97.1 0.00075 1.6E-08 65.4 6.1 39 368-408 1-39 (154)
319 PF13191 AAA_16: AAA ATPase do 97.1 0.00029 6.3E-09 69.9 3.2 59 335-402 2-63 (185)
320 PRK13947 shikimate kinase; Pro 97.1 0.00042 9.1E-09 68.7 4.3 31 368-398 3-33 (171)
321 PF06309 Torsin: Torsin; Inte 97.1 0.0012 2.7E-08 63.5 7.0 52 333-390 25-77 (127)
322 cd01130 VirB11-like_ATPase Typ 97.1 0.00055 1.2E-08 69.6 5.0 71 365-435 24-110 (186)
323 KOG2383 Predicted ATPase [Gene 97.1 0.003 6.6E-08 70.9 11.0 161 363-553 111-297 (467)
324 PF13604 AAA_30: AAA domain; P 97.1 0.00094 2E-08 68.7 6.7 98 367-481 19-132 (196)
325 PRK13946 shikimate kinase; Pro 97.1 0.0013 2.8E-08 66.8 7.6 35 365-399 9-43 (184)
326 TIGR01420 pilT_fam pilus retra 97.1 0.0011 2.4E-08 74.1 7.6 70 366-435 122-205 (343)
327 TIGR02782 TrbB_P P-type conjug 97.1 0.00044 9.6E-09 75.9 4.3 68 366-435 132-214 (299)
328 PF03266 NTPase_1: NTPase; In 97.1 0.0009 1.9E-08 67.5 6.0 27 368-394 1-30 (168)
329 COG0703 AroK Shikimate kinase 97.1 0.0014 2.9E-08 66.4 7.2 32 367-398 3-34 (172)
330 cd01122 GP4d_helicase GP4d_hel 97.1 0.0022 4.7E-08 68.6 9.2 38 362-399 26-67 (271)
331 PRK03839 putative kinase; Prov 97.1 0.00048 1E-08 69.3 3.9 30 369-398 3-32 (180)
332 KOG2228 Origin recognition com 97.0 0.0036 7.9E-08 69.0 10.6 159 335-517 26-219 (408)
333 PRK09354 recA recombinase A; P 97.0 0.0022 4.7E-08 71.8 9.2 76 364-439 58-152 (349)
334 TIGR00416 sms DNA repair prote 97.0 0.0029 6.2E-08 73.4 10.5 78 362-439 90-184 (454)
335 PRK00625 shikimate kinase; Pro 97.0 0.00059 1.3E-08 69.1 4.2 31 368-398 2-32 (173)
336 cd02020 CMPK Cytidine monophos 97.0 0.0017 3.7E-08 62.2 7.2 30 369-398 2-31 (147)
337 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0035 7.6E-08 67.7 10.3 94 330-436 57-160 (264)
338 cd03238 ABC_UvrA The excision 97.0 0.0049 1.1E-07 62.6 10.8 118 364-503 19-163 (176)
339 PRK13949 shikimate kinase; Pro 97.0 0.0012 2.6E-08 66.4 6.1 31 368-398 3-33 (169)
340 KOG2543 Origin recognition com 97.0 0.009 1.9E-07 66.9 13.2 62 333-403 6-67 (438)
341 PRK05973 replicative DNA helic 97.0 0.0093 2E-07 63.5 12.8 39 362-400 60-101 (237)
342 cd00227 CPT Chloramphenicol (C 97.0 0.00077 1.7E-08 67.7 4.5 38 367-404 3-40 (175)
343 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00067 1.5E-08 68.0 4.0 35 369-405 2-36 (183)
344 PRK11889 flhF flagellar biosyn 97.0 0.0064 1.4E-07 69.1 12.1 72 365-436 240-331 (436)
345 PRK04296 thymidine kinase; Pro 97.0 0.0023 5.1E-08 65.5 8.0 70 368-437 4-90 (190)
346 PRK10867 signal recognition pa 97.0 0.011 2.4E-07 68.2 14.2 75 363-437 97-195 (433)
347 PRK12339 2-phosphoglycerate ki 96.9 0.008 1.7E-07 62.2 11.8 30 366-395 3-32 (197)
348 PRK04841 transcriptional regul 96.9 0.0099 2.2E-07 73.8 14.9 151 367-541 33-219 (903)
349 smart00534 MUTSac ATPase domai 96.9 0.004 8.6E-08 63.4 9.4 102 369-483 2-123 (185)
350 TIGR02525 plasmid_TraJ plasmid 96.9 0.0035 7.6E-08 70.9 9.8 68 368-435 151-235 (372)
351 PRK14532 adenylate kinase; Pro 96.9 0.00078 1.7E-08 68.1 4.2 36 368-405 2-37 (188)
352 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0034 7.3E-08 66.7 9.2 36 369-404 2-40 (249)
353 PF00448 SRP54: SRP54-type pro 96.9 0.002 4.4E-08 66.5 7.2 108 366-486 1-131 (196)
354 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0076 1.6E-07 62.8 11.6 39 362-400 12-53 (224)
355 cd00984 DnaB_C DnaB helicase C 96.9 0.0033 7.1E-08 65.9 8.8 38 362-399 9-50 (242)
356 PRK12724 flagellar biosynthesi 96.9 0.0073 1.6E-07 69.1 12.1 70 365-434 222-308 (432)
357 cd03247 ABCC_cytochrome_bd The 96.9 0.0039 8.5E-08 62.7 8.9 107 363-485 25-160 (178)
358 PRK05800 cobU adenosylcobinami 96.9 0.0045 9.9E-08 62.5 9.3 91 368-466 3-114 (170)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0047 1E-07 60.4 9.1 101 363-483 23-128 (144)
360 KOG0479 DNA replication licens 96.9 0.0053 1.1E-07 71.5 10.7 153 334-501 302-481 (818)
361 PLN02200 adenylate kinase fami 96.9 0.0012 2.5E-08 70.1 5.2 42 362-405 39-80 (234)
362 PRK13900 type IV secretion sys 96.9 0.0019 4.1E-08 72.0 7.0 71 365-435 159-245 (332)
363 COG2274 SunT ABC-type bacterio 96.9 0.0026 5.6E-08 77.4 8.6 69 412-503 614-682 (709)
364 cd03228 ABCC_MRP_Like The MRP 96.9 0.003 6.5E-08 63.2 7.7 107 363-485 25-158 (171)
365 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0092 2E-07 62.2 11.7 38 362-399 16-56 (229)
366 PRK14531 adenylate kinase; Pro 96.9 0.001 2.3E-08 67.4 4.5 36 367-404 3-38 (183)
367 PRK13764 ATPase; Provisional 96.9 0.0014 3.1E-08 78.0 6.1 70 366-436 257-335 (602)
368 COG3854 SpoIIIAA ncharacterize 96.8 0.0028 6.1E-08 66.7 7.4 71 366-436 137-229 (308)
369 COG4619 ABC-type uncharacteriz 96.8 0.006 1.3E-07 61.6 9.3 26 364-389 27-52 (223)
370 PRK13894 conjugal transfer ATP 96.8 0.0013 2.9E-08 72.8 5.1 70 366-435 148-229 (319)
371 COG4178 ABC-type uncharacteriz 96.8 0.0025 5.5E-08 75.4 7.6 28 362-389 415-442 (604)
372 cd03243 ABC_MutS_homologs The 96.8 0.0035 7.6E-08 64.4 7.9 22 367-388 30-51 (202)
373 PRK06217 hypothetical protein; 96.8 0.0011 2.5E-08 67.0 4.2 31 368-398 3-33 (183)
374 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0056 1.2E-07 61.1 9.0 103 363-483 24-149 (166)
375 cd02021 GntK Gluconate kinase 96.8 0.0011 2.4E-08 64.4 3.9 28 369-396 2-29 (150)
376 PRK13833 conjugal transfer pro 96.8 0.0016 3.4E-08 72.3 5.6 70 366-435 144-225 (323)
377 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.4E-08 66.8 4.0 35 369-405 2-36 (194)
378 TIGR02788 VirB11 P-type DNA tr 96.8 0.0017 3.6E-08 71.5 5.7 73 361-435 139-228 (308)
379 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0084 1.8E-07 64.4 10.9 39 362-400 32-73 (259)
380 PRK13851 type IV secretion sys 96.8 0.0014 3E-08 73.4 5.0 73 363-435 159-246 (344)
381 KOG3347 Predicted nucleotide k 96.8 0.0011 2.4E-08 65.4 3.6 32 367-398 8-39 (176)
382 PHA02774 E1; Provisional 96.8 0.0071 1.5E-07 71.3 10.9 32 367-398 435-467 (613)
383 PRK08154 anaerobic benzoate ca 96.8 0.0046 1E-07 68.2 8.9 36 363-398 130-165 (309)
384 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0072 1.6E-07 62.1 9.8 21 367-387 29-49 (200)
385 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0042 9E-08 61.1 7.4 108 364-486 23-144 (157)
386 PRK14530 adenylate kinase; Pro 96.7 0.0014 3E-08 68.1 4.3 35 368-404 5-39 (215)
387 PRK04328 hypothetical protein; 96.7 0.012 2.6E-07 62.8 11.5 38 362-399 19-59 (249)
388 cd00544 CobU Adenosylcobinamid 96.7 0.0061 1.3E-07 61.6 8.7 94 369-466 2-114 (169)
389 PRK09519 recA DNA recombinatio 96.7 0.0055 1.2E-07 74.9 9.8 117 363-479 57-194 (790)
390 PRK06696 uridine kinase; Valid 96.7 0.003 6.5E-08 66.1 6.7 40 364-403 20-62 (223)
391 PRK06547 hypothetical protein; 96.7 0.0017 3.6E-08 65.8 4.5 36 363-398 12-47 (172)
392 cd03246 ABCC_Protease_Secretio 96.7 0.0087 1.9E-07 60.0 9.7 105 365-484 27-158 (173)
393 cd02027 APSK Adenosine 5'-phos 96.7 0.0053 1.2E-07 60.4 8.0 36 369-404 2-40 (149)
394 PRK10416 signal recognition pa 96.7 0.012 2.6E-07 65.3 11.6 27 364-390 112-138 (318)
395 PTZ00202 tuzin; Provisional 96.7 0.013 2.9E-07 67.2 12.0 64 329-401 258-321 (550)
396 PF10236 DAP3: Mitochondrial r 96.7 0.063 1.4E-06 59.4 17.1 132 414-547 142-308 (309)
397 PRK04301 radA DNA repair and r 96.7 0.0059 1.3E-07 67.4 9.1 117 362-480 98-251 (317)
398 TIGR01313 therm_gnt_kin carboh 96.7 0.0013 2.8E-08 64.9 3.6 28 369-396 1-28 (163)
399 TIGR02655 circ_KaiC circadian 96.7 0.0097 2.1E-07 69.6 11.3 78 362-439 259-367 (484)
400 PTZ00088 adenylate kinase 1; P 96.7 0.0018 4E-08 68.5 4.8 38 365-404 5-42 (229)
401 TIGR02236 recomb_radA DNA repa 96.7 0.0077 1.7E-07 66.1 9.8 116 362-479 91-244 (310)
402 TIGR03499 FlhF flagellar biosy 96.7 0.0052 1.1E-07 66.9 8.2 37 365-401 193-234 (282)
403 PRK03731 aroL shikimate kinase 96.6 0.0019 4E-08 64.3 4.3 32 367-398 3-34 (171)
404 PRK05057 aroK shikimate kinase 96.6 0.002 4.3E-08 64.9 4.5 34 366-399 4-37 (172)
405 PF04665 Pox_A32: Poxvirus A32 96.6 0.023 5E-07 60.6 12.7 133 364-516 11-169 (241)
406 PF05272 VirE: Virulence-assoc 96.6 0.0058 1.3E-07 63.3 7.9 125 342-503 34-169 (198)
407 PF13521 AAA_28: AAA domain; P 96.6 0.0037 7.9E-08 61.9 6.2 35 369-404 2-36 (163)
408 PRK00279 adk adenylate kinase; 96.6 0.0042 9.2E-08 64.5 6.9 29 369-397 3-31 (215)
409 COG2805 PilT Tfp pilus assembl 96.6 0.0096 2.1E-07 65.0 9.7 113 366-507 124-251 (353)
410 COG0563 Adk Adenylate kinase a 96.6 0.0028 6.1E-08 64.6 5.4 35 368-404 2-36 (178)
411 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0044 9.5E-08 63.1 6.6 72 365-436 24-100 (177)
412 PHA02530 pseT polynucleotide k 96.6 0.0062 1.3E-07 66.1 8.1 39 366-405 2-40 (300)
413 TIGR02238 recomb_DMC1 meiotic 96.6 0.008 1.7E-07 66.5 9.0 115 363-479 93-243 (313)
414 PRK13695 putative NTPase; Prov 96.6 0.012 2.7E-07 58.8 9.6 22 369-390 3-24 (174)
415 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0055 1.2E-07 68.1 7.6 70 366-437 162-243 (325)
416 cd03227 ABC_Class2 ABC-type Cl 96.5 0.0087 1.9E-07 59.5 8.3 22 366-387 21-42 (162)
417 COG1936 Predicted nucleotide k 96.5 0.0042 9E-08 62.8 5.8 34 368-404 2-35 (180)
418 PRK14528 adenylate kinase; Pro 96.5 0.0023 5E-08 65.2 4.2 30 368-397 3-32 (186)
419 COG5245 DYN1 Dynein, heavy cha 96.5 0.018 3.9E-07 72.8 12.2 181 363-558 1491-1718(3164)
420 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0023 5E-08 64.1 4.0 34 368-403 5-38 (188)
421 PRK14527 adenylate kinase; Pro 96.5 0.0022 4.8E-08 65.3 3.9 39 364-404 4-42 (191)
422 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0078 1.7E-07 60.3 7.7 104 365-483 25-156 (173)
423 PRK08233 hypothetical protein; 96.5 0.0061 1.3E-07 60.7 6.8 32 367-398 4-36 (182)
424 PTZ00035 Rad51 protein; Provis 96.5 0.0095 2E-07 66.6 8.9 115 362-478 114-264 (337)
425 COG4650 RtcR Sigma54-dependent 96.5 0.0034 7.5E-08 67.8 5.1 79 363-441 205-298 (531)
426 PRK05541 adenylylsulfate kinas 96.5 0.0082 1.8E-07 60.1 7.7 41 364-404 5-48 (176)
427 PRK02496 adk adenylate kinase; 96.5 0.0024 5.1E-08 64.5 3.8 30 368-397 3-32 (184)
428 PRK08099 bifunctional DNA-bind 96.4 0.0072 1.6E-07 69.0 7.9 40 365-404 218-257 (399)
429 COG1102 Cmk Cytidylate kinase 96.4 0.0024 5.2E-08 63.9 3.5 28 369-396 3-30 (179)
430 TIGR01351 adk adenylate kinase 96.4 0.0026 5.6E-08 65.9 3.9 34 369-404 2-35 (210)
431 PHA02624 large T antigen; Prov 96.4 0.0079 1.7E-07 71.2 8.3 38 363-400 428-465 (647)
432 PLN03187 meiotic recombination 96.4 0.0073 1.6E-07 67.6 7.8 114 363-478 123-272 (344)
433 cd02019 NK Nucleoside/nucleoti 96.4 0.0057 1.2E-07 52.4 5.4 30 369-398 2-32 (69)
434 TIGR02655 circ_KaiC circadian 96.4 0.021 4.5E-07 66.9 11.8 39 362-400 17-59 (484)
435 cd03215 ABC_Carb_Monos_II This 96.4 0.012 2.5E-07 59.5 8.5 27 364-390 24-50 (182)
436 PRK05703 flhF flagellar biosyn 96.4 0.016 3.5E-07 66.7 10.6 36 366-401 221-261 (424)
437 COG4088 Predicted nucleotide k 96.4 0.0045 9.7E-08 64.3 5.3 22 369-390 4-25 (261)
438 PF01745 IPT: Isopentenyl tran 96.4 0.0042 9E-08 64.9 5.1 133 368-518 3-140 (233)
439 cd03115 SRP The signal recogni 96.4 0.018 3.9E-07 57.4 9.6 32 369-400 3-37 (173)
440 cd03213 ABCG_EPDR ABCG transpo 96.4 0.018 3.9E-07 58.9 9.7 28 363-390 32-59 (194)
441 TIGR01425 SRP54_euk signal rec 96.4 0.027 5.8E-07 64.9 12.0 72 364-435 98-192 (429)
442 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.013 2.8E-07 66.1 9.3 69 367-435 135-222 (358)
443 PRK13541 cytochrome c biogenes 96.3 0.028 6.1E-07 57.3 10.9 27 364-390 24-50 (195)
444 PRK13808 adenylate kinase; Pro 96.3 0.012 2.7E-07 65.5 8.8 34 369-404 3-36 (333)
445 PF08423 Rad51: Rad51; InterP 96.3 0.0064 1.4E-07 65.4 6.3 116 369-486 41-192 (256)
446 cd03232 ABC_PDR_domain2 The pl 96.3 0.022 4.7E-07 58.1 10.0 26 364-389 31-56 (192)
447 TIGR00064 ftsY signal recognit 96.3 0.075 1.6E-06 57.7 14.6 37 363-399 69-108 (272)
448 TIGR00767 rho transcription te 96.3 0.017 3.7E-07 65.8 9.8 25 367-391 169-193 (415)
449 cd01125 repA Hexameric Replica 96.3 0.015 3.2E-07 61.5 8.9 21 369-389 4-24 (239)
450 PF09848 DUF2075: Uncharacteri 96.3 0.01 2.2E-07 66.4 8.2 23 368-390 3-25 (352)
451 PF13481 AAA_25: AAA domain; P 96.3 0.0071 1.5E-07 61.0 6.2 73 368-440 34-156 (193)
452 PRK09302 circadian clock prote 96.3 0.03 6.5E-07 65.8 12.2 112 362-483 27-178 (509)
453 PF08298 AAA_PrkA: PrkA AAA do 96.3 0.0076 1.7E-07 67.3 6.8 83 332-420 59-143 (358)
454 PLN03186 DNA repair protein RA 96.3 0.011 2.4E-07 66.3 8.1 115 363-479 120-270 (342)
455 TIGR02239 recomb_RAD51 DNA rep 96.3 0.0098 2.1E-07 65.9 7.6 116 362-479 92-243 (316)
456 PRK14730 coaE dephospho-CoA ki 96.3 0.017 3.7E-07 59.5 8.9 36 368-405 3-38 (195)
457 COG2804 PulE Type II secretory 96.3 0.0083 1.8E-07 69.5 7.1 92 328-436 233-338 (500)
458 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0099 2.2E-07 61.0 7.1 43 363-405 12-55 (199)
459 cd02022 DPCK Dephospho-coenzym 96.3 0.017 3.6E-07 58.4 8.6 34 369-405 2-35 (179)
460 smart00487 DEXDc DEAD-like hel 96.3 0.023 5.1E-07 55.5 9.4 24 367-390 25-49 (201)
461 PF13238 AAA_18: AAA domain; P 96.2 0.0032 6.9E-08 58.6 3.1 22 369-390 1-22 (129)
462 PRK01184 hypothetical protein; 96.2 0.0039 8.4E-08 62.8 3.9 29 368-397 3-31 (184)
463 cd03214 ABC_Iron-Siderophores_ 96.2 0.014 3E-07 58.9 7.8 107 364-484 23-160 (180)
464 PLN02674 adenylate kinase 96.2 0.0054 1.2E-07 65.6 5.1 40 364-405 29-68 (244)
465 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.023 5E-07 59.9 9.7 23 366-388 31-53 (222)
466 PRK11174 cysteine/glutathione 96.2 0.017 3.7E-07 68.8 9.7 28 363-390 373-400 (588)
467 COG2874 FlaH Predicted ATPases 96.2 0.025 5.4E-07 59.2 9.5 126 353-491 13-176 (235)
468 PRK04182 cytidylate kinase; Pr 96.2 0.0045 9.7E-08 61.5 4.0 29 368-396 2-30 (180)
469 TIGR01069 mutS2 MutS2 family p 96.2 0.068 1.5E-06 66.0 14.9 23 367-389 323-345 (771)
470 cd03229 ABC_Class3 This class 96.2 0.012 2.6E-07 59.2 7.1 26 365-390 25-50 (178)
471 PF12780 AAA_8: P-loop contain 96.2 0.025 5.4E-07 61.3 10.0 171 333-519 8-212 (268)
472 TIGR02533 type_II_gspE general 96.2 0.0098 2.1E-07 69.6 7.3 94 328-435 217-321 (486)
473 TIGR00152 dephospho-CoA kinase 96.2 0.031 6.8E-07 56.7 10.1 35 369-405 2-36 (188)
474 PF00406 ADK: Adenylate kinase 96.2 0.0036 7.8E-08 61.2 3.0 35 371-407 1-35 (151)
475 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.025 5.4E-07 58.8 9.3 22 367-388 30-51 (204)
476 PRK14737 gmk guanylate kinase; 96.1 0.01 2.2E-07 60.8 6.3 26 365-390 3-28 (186)
477 PRK12608 transcription termina 96.1 0.032 7E-07 63.1 10.7 23 368-390 135-157 (380)
478 PRK13539 cytochrome c biogenes 96.1 0.041 8.8E-07 56.8 10.7 27 364-390 26-52 (207)
479 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0052 1.1E-07 60.6 3.9 29 369-397 3-31 (171)
480 KOG0058 Peptide exporter, ABC 96.1 0.019 4E-07 68.9 9.1 28 362-389 490-517 (716)
481 PRK12338 hypothetical protein; 96.1 0.067 1.5E-06 59.4 12.8 31 365-395 3-33 (319)
482 TIGR03819 heli_sec_ATPase heli 96.1 0.0068 1.5E-07 67.8 5.1 70 366-435 178-263 (340)
483 PRK11176 lipid transporter ATP 96.1 0.018 3.9E-07 68.4 9.0 28 363-390 366-393 (582)
484 TIGR03375 type_I_sec_LssB type 96.0 0.021 4.6E-07 69.5 9.5 27 364-390 489-515 (694)
485 PF13245 AAA_19: Part of AAA d 96.0 0.0091 2E-07 52.5 4.5 31 369-399 13-50 (76)
486 TIGR03796 NHPM_micro_ABC1 NHPM 96.0 0.017 3.7E-07 70.4 8.5 28 363-390 502-529 (710)
487 TIGR03797 NHPM_micro_ABC2 NHPM 96.0 0.023 5E-07 69.1 9.5 28 363-390 476-503 (686)
488 TIGR01448 recD_rel helicase, p 96.0 0.024 5.2E-07 69.5 9.6 97 368-482 340-455 (720)
489 TIGR02868 CydC thiol reductant 96.0 0.026 5.6E-07 66.4 9.5 28 363-390 358-385 (529)
490 PRK00889 adenylylsulfate kinas 96.0 0.027 5.8E-07 56.3 8.3 39 365-403 3-44 (175)
491 PF13479 AAA_24: AAA domain 96.0 0.0086 1.9E-07 62.4 4.9 68 366-437 3-80 (213)
492 TIGR01846 type_I_sec_HlyB type 96.0 0.027 5.8E-07 68.7 9.9 27 364-390 481-507 (694)
493 TIGR00959 ffh signal recogniti 95.9 0.055 1.2E-06 62.4 11.8 73 364-436 97-193 (428)
494 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.025 5.4E-07 59.3 8.2 22 367-388 31-52 (216)
495 cd03218 ABC_YhbG The ABC trans 95.9 0.02 4.4E-07 59.8 7.4 27 364-390 24-50 (232)
496 PRK09302 circadian clock prote 95.9 0.051 1.1E-06 63.9 11.6 107 362-479 269-406 (509)
497 TIGR00150 HI0065_YjeE ATPase, 95.9 0.012 2.6E-07 57.4 5.2 29 365-393 21-49 (133)
498 PRK13657 cyclic beta-1,2-gluca 95.9 0.024 5.2E-07 67.6 8.9 28 363-390 358-385 (588)
499 PF02562 PhoH: PhoH-like prote 95.9 0.0048 1E-07 64.3 2.6 23 368-390 21-43 (205)
500 COG2884 FtsE Predicted ATPase 95.9 0.018 4E-07 59.2 6.6 30 361-390 21-52 (223)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-108 Score=935.36 Aligned_cols=569 Identities=48% Similarity=0.686 Sum_probs=493.1
Q ss_pred eeeehHHHHHHHHcCCccEEEEeCc--EEEEEEeCCCcccchhhhhhhchhhhhhhhccCCCcceEEEecCCCCCcchHH
Q 003473 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (817)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (817)
..++|++|++.++.++|++|.+++. .+.++.+++.. ...|.+....|.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGSK-------------------------NTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCcc-------------------------eEEeecCCcccHH-HHH
Confidence 3589999999999999999999874 45555555411 1233333323332 456
Q ss_pred HHHhCCcEeccCCCCCCChHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCCCCCCccccCCCccccccccCc
Q 003473 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGV 338 (817)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ 338 (817)
.+..+++.+....+...++|..++.+++|+.++++++.++..+.++...+.. .+.++++.+....+....++|+||+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~-~~~~gkskak~~~~~~~~v~F~DVAG~ 155 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGG-AFSFGKSKAKLYLEDQVKVTFADVAGV 155 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-ccCCChHHHHHhcccccCcChhhhcCc
Confidence 6777776654443344556666677777777766654443222222222221 344555554455566788999999999
Q ss_pred hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHH
Q 003473 339 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLF 418 (817)
Q Consensus 339 eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF 418 (817)
+++|++|.|+|+||++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|.+++++|++|
T Consensus 156 dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF 235 (596)
T COG0465 156 DEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLF 235 (596)
T ss_pred HHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceE
Q 003473 419 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 498 (817)
Q Consensus 419 ~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~ 498 (817)
++|++++||||||||||++++.|+.+ .++++++++|++||||.+||||..+.+|+||++|||||.|||||+|||||||+
T Consensus 236 ~qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRq 314 (596)
T COG0465 236 EQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQ 314 (596)
T ss_pred HHhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCccee
Confidence 99999999999999999999999766 56789999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHhc
Q 003473 499 VMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 499 I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 578 (817)
|.++.||..+|++|++.|++++ ++++++|+..+|+.|+||+|+||+|++|+|++.|.|+++..|++.||++|++|+++
T Consensus 315 I~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 315 ILVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIA 392 (596)
T ss_pred eecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhc
Confidence 9999999999999999999764 67899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccchhhHHHHHhhhhhh
Q 003473 579 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTL 658 (817)
Q Consensus 579 g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~t~~~l~~~i~~l 658 (817)
|+++++..+++.+|+.+||||+|||+++ .++|+.++|+|+||+||+ .++||++..|++|++++++++++++|+++
T Consensus 393 G~erks~vise~ek~~~AYhEaghalv~----~~l~~~d~v~KvtIiPrG-~alG~t~~~Pe~d~~l~sk~~l~~~i~~~ 467 (596)
T COG0465 393 GPERKSRVISEAEKKITAYHEAGHALVG----LLLPDADPVHKVTIIPRG-RALGYTLFLPEEDKYLMSKEELLDRIDVL 467 (596)
T ss_pred CcCcCCcccChhhhcchHHHHHHHHHHH----HhCCCCcccceeeeccCc-hhhcchhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999997 589999999999999995 89999999999999999999999999999
Q ss_pred cchhhHHHHhcCC-CcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 003473 659 LGGRAAEEVAYSG-RISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQRE 737 (817)
Q Consensus 659 LgGraAEel~f~~-~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~E 737 (817)
||||||||++| + ++||||+|||++||++|+.||++|||++.+|++.+...+...+........+ ++++++.||.|
T Consensus 468 lgGRaAEel~~-g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~---Se~ta~~ID~e 543 (596)
T COG0465 468 LGGRAAEELIF-GYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNY---SEETAQEIDRE 543 (596)
T ss_pred hCCcHhhhhhh-cccccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCc---cHHHHHHHHHH
Confidence 99999999999 6 9999999999999999999999999999999999987543111111111123 45678899999
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCcCCC
Q 003473 738 VKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMVVAP 788 (817)
Q Consensus 738 v~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~~~~~p 788 (817)
|++++++||++|++||.+|++.++.+++.|+|+|||+++++++|+.....|
T Consensus 544 vk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~~~ 594 (596)
T COG0465 544 VKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRKLP 594 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999999999999875444
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-105 Score=881.87 Aligned_cols=439 Identities=47% Similarity=0.711 Sum_probs=415.2
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+...+++|+||.|+|++|++|+|+|+||++|++|.++|++.|+||||+||||||||+||||+|+|+++|||++++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
+|+|+++.++|++|..|++.+||||||||||+++.+|... ...+.++++||||.+||||..+.+||||+|||+|+.
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999998643 223889999999999999999999999999999999
Q ss_pred CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 564 (817)
Q Consensus 485 LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 564 (817)
||+||.||||||++|.|+.||..+|.+||+.|+.+ ++++.++|+..||+-|+||+|+||+|+||.|++.|+..+...|
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999976 5788999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccc
Q 003473 565 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 644 (817)
Q Consensus 565 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 644 (817)
+|.|++.|-+|+++|.++++..++++.++++||||+|||+|+ .+..++.|++|+||.|| |.++|.+.+.|+.|++
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA----~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D~~ 604 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA----LYTKGAMPLHKATIMPR-GPSLGHTSQLPEKDRY 604 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE----eecCCCccccceeeccC-CccccceeecCccchh
Confidence 999999999999999999999999999999999999999997 57889999999999999 7899999999999999
Q ss_pred hhhHHHHHhhhhhhcchhhHHHHhcC-CCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCC
Q 003473 645 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 723 (817)
Q Consensus 645 ~~t~~~l~~~i~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 723 (817)
..||.+|++++.||||||+|||++|| +.+|+||++||++||++|++||+.||||+++|++++....+.
T Consensus 605 ~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~----------- 673 (752)
T KOG0734|consen 605 SITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNS----------- 673 (752)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCC-----------
Confidence 99999999999999999999999997 579999999999999999999999999999999998653220
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003473 724 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 785 (817)
Q Consensus 724 ~~~~~~~~~~i~~Ev~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~~~ 785 (817)
.....++...||.||+++|+++|+||+.||+.|...|++||++|+|+|||+++||++++.+.
T Consensus 674 ~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 674 SSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 11123456789999999999999999999999999999999999999999999999999764
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-99 Score=878.85 Aligned_cols=462 Identities=53% Similarity=0.778 Sum_probs=424.9
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+...+|+|+||+|++++|++|.|+|.||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 55567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
+++|.+++++|++|..|+.++||||||||||++++.|++....+.+++++++|||||.+||||....+|||+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997545567899999999999999999999999999999999999
Q ss_pred CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 564 (817)
Q Consensus 485 LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 564 (817)
||+||+|||||||+|.+++|+..+|.+|+++|+++.++. .+++|+..+|..|+||+|+||.|+||+|++.|+|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999886554 5788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccc
Q 003473 565 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 644 (817)
Q Consensus 565 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 644 (817)
+..||++|++|++.|++++...++.++++.+||||||||++++ ++++.+++.|++|+| |+++||+++.|.++ +
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiP--GqalG~a~~~P~~~-~ 614 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIP--GQALGYAQYLPTDD-Y 614 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEecc--CCccceEEECCccc-c
Confidence 9999999999999999999999999999999999999999984 679999999999999 45999999999877 9
Q ss_pred hhhHHHHHhhhhhhcchhhHHHHhcCCCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCCC
Q 003473 645 LLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWG 724 (817)
Q Consensus 645 ~~t~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~~ 724 (817)
++++++|+++|+++||||||||++||+++||||++||++||++|++||++|||++++|++++.....+ + ..++.
T Consensus 615 l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~--~----~~~~~ 688 (774)
T KOG0731|consen 615 LLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPG--D----ESFRK 688 (774)
T ss_pred cccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccc--c----ccccC
Confidence 99999999999999999999999997689999999999999999999999999999999999432211 1 12223
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCcCCCc-cccccccCCcC
Q 003473 725 RDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMVVAPI-ELSNFVAGRQE 800 (817)
Q Consensus 725 ~~~~~~~~~i~~Ev~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~~~~~p~-~l~~~~~~~~~ 800 (817)
.....+++.||.||++|+..||++|.++|++|++.|+.||+.|+|||+|+++|+.++++..+... +...+.+..++
T Consensus 689 p~s~~~~~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~~~ 765 (774)
T KOG0731|consen 689 PYSEKTAQLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQKIG 765 (774)
T ss_pred ccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhccc
Confidence 33345678899999999999999999999999999999999999999999999999998765444 24444444444
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.3e-93 Score=830.81 Aligned_cols=574 Identities=40% Similarity=0.621 Sum_probs=473.6
Q ss_pred CcceeeehHHHHHHHHcCCccEEEEeCcEEEEEEeCCCcccchhhhhhhchhhhhhhhccCCCcceEEEecCCCCCcchH
Q 003473 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (817)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (817)
....+++||+|++++++|+|++|.+.++.+...+....... ......|.+..|.....++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 44557999999999999999999998765543221110000 0001134454553224567
Q ss_pred HHHHhCCcEeccCCCCCCChHHHHH-HHHHHHHHHHHHHhhcccccc-cccccccccccCCCCCCCccccCCCccccccc
Q 003473 258 EKMLENQVEFGSPDKRSGGFLNSAL-IALFYVAVLAGLLHRFPVSFS-QQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 335 (817)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV 335 (817)
..|.+++|++...+....++|...+ .+++|++++.+++..+..... ....++ ....++++...........++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhc
Confidence 8899999999865554444444444 444566666555433211110 011111 1122333332223345567999999
Q ss_pred cCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHH
Q 003473 336 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 415 (817)
Q Consensus 336 ~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr 415 (817)
+|++++|+++.++++++++++.|..+|.+.|+|+||+||||||||++|+++|+++++||+.+++++|.++++|.+..+++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCcc
Q 003473 416 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 495 (817)
Q Consensus 416 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRF 495 (817)
++|..|+..+||||||||||+++..|+... .+.+++.++++++||.+||++..+.+|+||+|||+++.||++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 999999999999999999999998775432 3467888999999999999999889999999999999999999999999
Q ss_pred ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 496 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 496 dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
|++|.+++|+.++|.+||+.|+++. ++.+++++..+|..|.||+|+||+++|++|++.|.++++..|+++||++|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999874 45678899999999999999999999999999999999999999999999999
Q ss_pred HhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccchhhHHHHHhhh
Q 003473 576 SIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRL 655 (817)
Q Consensus 576 vi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~t~~~l~~~i 655 (817)
++.|.+++. ..++.+++++||||||||+|+ +++++.++|++|||+|| |+++||++..|+++++++++.+|+++|
T Consensus 423 v~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~----~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~~~~~t~~~l~~~i 496 (638)
T CHL00176 423 VIAGLEGTP-LEDSKNKRLIAYHEVGHAIVG----TLLPNHDPVQKVTLIPR-GQAKGLTWFTPEEDQSLVSRSQILARI 496 (638)
T ss_pred HHhhhccCc-cccHHHHHHHHHHhhhhHHHH----hhccCCCceEEEEEeec-CCCCCceEecCCcccccccHHHHHHHH
Confidence 999998764 457788999999999999997 46888899999999999 579999999999999999999999999
Q ss_pred hhhcchhhHHHHhcC-CCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCC-C-CCCCC-CCCCCCCcchHHHH
Q 003473 656 VTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSS-G-GIDES-GGGVPWGRDQGQLV 731 (817)
Q Consensus 656 ~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~ 731 (817)
+++|||||||+++|| +++|+||+|||++||+||+.||++||||+ +|++++..... . .+... .....+ .++++
T Consensus 497 ~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~ 572 (638)
T CHL00176 497 VGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEY---SEEIA 572 (638)
T ss_pred HHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCc---CHHHH
Confidence 999999999999996 37999999999999999999999999995 99999865332 1 01000 001122 34567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003473 732 DLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 785 (817)
Q Consensus 732 ~~i~~Ev~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~~~ 785 (817)
..||+||+++|++||++|++||++|++.|++||++|+|+|||+++||++|++..
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~ 626 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSY 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhc
Confidence 889999999999999999999999999999999999999999999999999764
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.3e-88 Score=797.29 Aligned_cols=563 Identities=43% Similarity=0.670 Sum_probs=477.5
Q ss_pred eeehHHHHHHHHcCCccEEEEeCcEEEEEEeCCCcccchhhhhhhchhhhhhhhccCCCcceEEEecCCCCCcchHHHHH
Q 003473 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (817)
Q Consensus 182 ~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (817)
.++|+.|.+.+.++.|.++.+....|.+..+++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998888777654431 244444433334577888
Q ss_pred hCCcEeccCCCCCCChHHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCCCCCCccccCCCccccccccCchHh
Q 003473 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEA 341 (817)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~eea 341 (817)
++++.+...+.....++..++..+++++++++++..+... ++.+.+ .....+.........+.....+|+|+.|.+.+
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~-mt~G~~-~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~ 160 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQ-MQGGGG-KGAMSFGKSKARMLTEDQIKTTFADVAGCDEA 160 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCC-ceeEEeccccccccCchhhhCcHHHHcCHHHH
Confidence 8999887655544455555555555555555555333211 111111 11112223323333344557889999999999
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHH
Q 003473 342 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 421 (817)
Q Consensus 342 KeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A 421 (817)
++++.+++++++.+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.++..++++|..|
T Consensus 161 ~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a 240 (644)
T PRK10733 161 KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240 (644)
T ss_pred HHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEe
Q 003473 422 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V 501 (817)
+..+||||||||||+++..++... .+.+++.++++|+||.+||++..+.+++||+|||+|+.||++++||||||++|.|
T Consensus 241 ~~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 241 KKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred HhcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEc
Confidence 999999999999999998876543 3456788999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHhcchh
Q 003473 502 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 581 (817)
Q Consensus 502 ~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e 581 (817)
++|+.++|.+||+.|+.+ .++.+++++..+|+.|.||||+||.++|++|+..|.++++..|++.||++|++++..|++
T Consensus 320 ~~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~ 397 (644)
T PRK10733 320 GLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAE 397 (644)
T ss_pred CCCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccc
Confidence 999999999999999976 467788999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccchhhHHHHHhhhhhhcch
Q 003473 582 KKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGG 661 (817)
Q Consensus 582 ~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~~~t~~~l~~~i~~lLgG 661 (817)
++...+++++++.+||||+|||+|+ +++++.+++++|+|+|| |.++||+++.|.++++..|+.+|+++|+++|||
T Consensus 398 ~~~~~~~~~~~~~~a~he~gha~~~----~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgG 472 (644)
T PRK10733 398 RRSMVMTEAQKESTAYHEAGHAIIG----RLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDAISASRQKLESQISTLYGG 472 (644)
T ss_pred cccccccHHHHHHHHHHHHHHHHHH----HHccCCCceeEEEEecc-CCCcceeEECCCcccccccHHHHHHHHHHHHhh
Confidence 8888888999999999999999997 46888899999999999 569999999999998899999999999999999
Q ss_pred hhHHHHhcC-CCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCCC-CCCC-CCCCCCCcchHHHHHHHHHHH
Q 003473 662 RAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGG-IDES-GGGVPWGRDQGQLVDLVQREV 738 (817)
Q Consensus 662 raAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~Ev 738 (817)
||||+++|| +++||||+|||++||+||+.||++||||+++|++.+....... +... .....+ ++++...||+||
T Consensus 473 raAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~---s~~~~~~id~ev 549 (644)
T PRK10733 473 RLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHM---SDETARIIDQEV 549 (644)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccccccccccccccccccc---CHHHHHHHHHHH
Confidence 999999996 4799999999999999999999999999999999986532211 1000 001122 345678899999
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHcCc
Q 003473 739 KALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 785 (817)
Q Consensus 739 ~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~~~ 785 (817)
++||++||++|++||++|++.|++||++|+|+|||+++||++|+...
T Consensus 550 ~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 550 KALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2e-80 Score=713.10 Aligned_cols=456 Identities=53% Similarity=0.790 Sum_probs=410.9
Q ss_pred CCCCCCccccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 003473 316 RGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 395 (817)
Q Consensus 316 ~~~~~~~~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi 395 (817)
+++......+..+.++|+||+|++++|+++.++++++++++.|..+|.++|+|+||+||||||||++|+++|+++++||+
T Consensus 38 ~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~ 117 (495)
T TIGR01241 38 GKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF 117 (495)
T ss_pred CCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 33433444566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003473 396 SCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 475 (817)
Q Consensus 396 ~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 475 (817)
.++++++.+.+.|.+...++++|+.|+..+||||||||||.++.+++... ...+++..+++++||.+||++..+.+++|
T Consensus 118 ~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 118 SISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred eccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc-CCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 99999999999999999999999999999999999999999998876532 23467788999999999999998889999
Q ss_pred EEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 476 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 476 IaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
|+|||+|+.|||+++||||||++|.+++|+.++|.+|++.++.+. ++..++++..++..|.|||++||+++|++|+..
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~ 274 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALL 274 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999764 445788999999999999999999999999999
Q ss_pred HHHhCCccccHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeE
Q 003473 556 AGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFT 635 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~ 635 (817)
|.++++..|+.+||..|++++..|.+++...+++.+++.+||||+|||+|+ ++++...++++++|.|| +.++||+
T Consensus 275 a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~----~~l~~~~~v~~vsi~pr-g~~~G~~ 349 (495)
T TIGR01241 275 AARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG----LLLKDADPVHKVTIIPR-GQALGYT 349 (495)
T ss_pred HHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH----HhcCCCCceEEEEEeec-CCccceE
Confidence 999999999999999999999999888878888999999999999999997 46777789999999999 5699999
Q ss_pred EeccCcccchhhHHHHHhhhhhhcchhhHHHHhcCCCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCC-CC
Q 003473 636 YTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG-GI 714 (817)
Q Consensus 636 ~~~~~~~~~~~t~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~-~~ 714 (817)
+..|.++.+..++++++++|+++|||||||+++| |++|+|+++||++||++|+.||.+|||++.+|++++...... .+
T Consensus 350 ~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~-G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l 428 (495)
T TIGR01241 350 QFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIF-GEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFL 428 (495)
T ss_pred EecCccccccCCHHHHHHHHHHHhhHHHHHHHHh-cCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCcccccc
Confidence 9888777889999999999999999999999999 689999999999999999999999999999999998653211 01
Q ss_pred CC-CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHHHc
Q 003473 715 DE-SGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLG 783 (817)
Q Consensus 715 ~~-~~~~~~~~~~~~~~~~~i~~Ev~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~il~ 783 (817)
.. .....+++ ..+...+|+||+++|++||++|++||++|+++|++||++|+++|+|+++||++|++
T Consensus 429 ~~~~~~~~~~s---~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 429 GRGFAKAKEYS---EETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred ccccccccccC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 00 00012233 34567899999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-58 Score=488.07 Aligned_cols=254 Identities=47% Similarity=0.759 Sum_probs=243.5
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
.++.|.+|++||.|+++.+++|+|.|+. |++|+.|..+|..||+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3567899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
+.+|+|+++..+|++|..|+.++||||||||||+++.+|-... .+++.|..+|+-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999886543 457889999999999999999999999999999999
Q ss_pred CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 562 (817)
Q Consensus 483 d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 562 (817)
|.|||||+|||||||.|+|++||.++|.+||+.|.++ +.+.+++|++.||+.|+|+|||||.++|.+|.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999977 56789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcch
Q 003473 563 VVEKIDFIHAVERSIAGI 580 (817)
Q Consensus 563 ~It~~d~~~Al~rvi~g~ 580 (817)
.|+++||.+|+++++...
T Consensus 379 ~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred eecHHHHHHHHHHHHhcc
Confidence 999999999999998643
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.6e-56 Score=547.45 Aligned_cols=319 Identities=20% Similarity=0.272 Sum_probs=274.7
Q ss_pred hHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh-----------------------------
Q 003473 356 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 406 (817)
Q Consensus 356 ~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~----------------------------- 406 (817)
..+.++|.++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345788999999999999999999999999999999999999999998643
Q ss_pred --------------hccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---C
Q 003473 407 --------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 469 (817)
Q Consensus 407 --------------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---~ 469 (817)
++.+..+++++|+.|++++||||||||||+++.+. ....++++|+.+||+.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 12234459999999999999999999999998542 22356899999999874 4
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCHHHHHhhcCCCCHHHHHHH
Q 003473 470 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 548 (817)
Q Consensus 470 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~LA~~t~G~SgaDL~~L 548 (817)
..+|+||||||+|+.|||||+||||||++|.|+.|+..+|++++..++..+++++.++ +|++.+|+.|.|||||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999987665556666654 689999999999999999999
Q ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccC--
Q 003473 549 VNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILP-- 626 (817)
Q Consensus 549 v~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~p-- 626 (817)
|++|+..|.++++..|+++++..|++|+++|++.+.. +..++ .+|+||+|||||+ .++++.++|++|||+|
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq----~~L~~~~pv~kISIy~~~ 1922 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQ----NVLLSNCPIDPISIYMKK 1922 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHH----HhccCCCCcceEEEecCC
Confidence 9999999999999999999999999999999876532 33343 3699999999997 4678899999999964
Q ss_pred ---CCcccceeEEeccCcccchhhHHHHHhhhhhhcchhhHHHHhcCCCcCCCcchHHHHHHHHHHHHHHHhcccCC---
Q 003473 627 ---RTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRT--- 700 (817)
Q Consensus 627 ---r~g~alG~~~~~~~~~~~~~t~~~l~~~i~~lLgGraAEel~f~~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~--- 700 (817)
+++.+.||+|+.|.+ +++++.+++.+|++||||||||+++|. ..+ .|+.||+.|||.+.
T Consensus 1923 ~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~-~~~------------~~~n~It~yg~vEnD~~ 1987 (2281)
T CHL00206 1923 KSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSL-PGP------------DEKNGITSYGLVENDSD 1987 (2281)
T ss_pred ccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccC-cch------------hhhcCcccccchhhhhH
Confidence 346678999998765 699999999999999999999999993 222 58999999999998
Q ss_pred --CCccee
Q 003473 701 --IGPVSI 706 (817)
Q Consensus 701 --lg~~~~ 706 (817)
.|.+.+
T Consensus 1988 La~glLe~ 1995 (2281)
T CHL00206 1988 LVHGLLEV 1995 (2281)
T ss_pred HhHhHHHh
Confidence 565553
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-53 Score=480.71 Aligned_cols=323 Identities=39% Similarity=0.651 Sum_probs=280.7
Q ss_pred eEEEecCCCCCcchHHH-HHhCCcEeccCCC---------------------------CCCChHHHHHHHHHHHHHHHHH
Q 003473 243 IVYTTTRPSDIKTPYEK-MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAGL 294 (817)
Q Consensus 243 ~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~ 294 (817)
++.+|++|..++..+++ ..++.|+++.|.. .++||++++|..+|..+.+-.+
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQAT 402 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHh
Confidence 35677888877765553 6677888887763 2578999999999998887766
Q ss_pred HhhcccccccccccccccccCCCCCCCccccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEc
Q 003473 295 LHRFPVSFSQQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVG 373 (817)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~G 373 (817)
.+.+. .+ +...++ .+.+.-+....+.++++|+||.|++++|.+|++.|.+ +++|++|.++|..+|+||||||
T Consensus 403 r~~~~-~~-~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyG 475 (693)
T KOG0730|consen 403 RRTLE-IF-QEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYG 475 (693)
T ss_pred hhhHH-HH-HHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEEC
Confidence 54110 00 111111 2223333445678899999999999999999999998 9999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHH
Q 003473 374 LPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 453 (817)
Q Consensus 374 PPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 453 (817)
|||||||++|||+|++++++|+++++.++.++|+|++++.++++|.+|++.+|||||+||||+++..|++. .+...
T Consensus 476 PPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v~ 551 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGVT 551 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999754 23677
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHH
Q 003473 454 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 533 (817)
Q Consensus 454 ~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~L 533 (817)
++++++||++|||+....+|+||||||||+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|++.|
T Consensus 552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~L 629 (693)
T KOG0730|consen 552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999976 688999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhC--CccccHHHHHHHHHHHhc
Q 003473 534 ASMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 534 A~~t~G~SgaDL~~Lv~eAal~A~r~~--~~~It~~d~~~Al~rvi~ 578 (817)
|..|+|||||||.++|++|++.|.+++ -..|+..||++|+..+..
T Consensus 630 a~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 999999999999999999999999985 467899999999976543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-51 Score=457.01 Aligned_cols=334 Identities=37% Similarity=0.587 Sum_probs=278.4
Q ss_pred eEEEecCCCCCcchHHH--HHhCCcEeccCCC---------------------------CCCChHHHHHHHHHHHHHHHH
Q 003473 243 IVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLAG 293 (817)
Q Consensus 243 ~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~ 293 (817)
++-+|++|+.+++.+++ .+++.|.++.|+. .++||++++|.+++..+.+.+
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 46789999888766653 4566677776653 378999999999999999888
Q ss_pred HHhhcccccc-cccc----c---------c--ccc---cc---------------CCC----------------------
Q 003473 294 LLHRFPVSFS-QQTA----G---------Q--VGH---RK---------------TRG---------------------- 317 (817)
Q Consensus 294 ~~~~~~~~~~-~~~~----~---------~--~~~---~~---------------~~~---------------------- 317 (817)
+-+.|..... .... + + +.. .. ...
T Consensus 412 ikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~ 491 (802)
T KOG0733|consen 412 IKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS 491 (802)
T ss_pred HHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH
Confidence 7654421110 0000 0 0 000 00 000
Q ss_pred ----CCCCccccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 003473 318 ----PGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV 392 (817)
Q Consensus 318 ----~~~~~~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv 392 (817)
+..+......|.|+|+||.|+++++.+|...|.+ .++|+.|.++|...|.|||||||||||||+||||+|+|+|.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 0001112234889999999999999999987776 99999999999999999999999999999999999999999
Q ss_pred cEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003473 393 PFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 472 (817)
Q Consensus 393 pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 472 (817)
+|+++.+.+++++|+|+++..+|.+|.+|+..+|||||+||||+|.+.|+.. ......+++||||++|||...+.+
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999754 355678999999999999999999
Q ss_pred EEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcC--CCCHHHHHHHHH
Q 003473 473 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLVN 550 (817)
Q Consensus 473 VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~ 550 (817)
|.|||||||||.+|||++||||||+.++|++|+.++|.+||+.+.++...++.+|+|++.||+.+. |||||||..+|+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999877789999999999999776 999999999999
Q ss_pred HHHHHHHHhC----------------CccccHHHHHHHHHHHhcch
Q 003473 551 EAALLAGRLN----------------KVVVEKIDFIHAVERSIAGI 580 (817)
Q Consensus 551 eAal~A~r~~----------------~~~It~~d~~~Al~rvi~g~ 580 (817)
+|.+.|.++. ...+++.||++|+.++....
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9999998752 12467789999998875443
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-45 Score=378.86 Aligned_cols=258 Identities=41% Similarity=0.676 Sum_probs=243.7
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
.++.|.+|+.||.|+.+..+.|+|+|+. |.+|++|..+|..||+|||||||||||||++|+|+|+..+.-|+.+-+|++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4778999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
+.+|+|+++..+|++|+.|+....||||+||||+++..|-... .+++.|..+++-.|++++|||+.+.+|-|+.|||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999998874432 356788899999999999999999999999999999
Q ss_pred CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCc
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 562 (817)
Q Consensus 483 d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 562 (817)
+.|||||+||||+||.++|.+||.+.|..|++.|.+. +....|+-++.||+.++.-+|++|+.+|.+|.+.|.+..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 56788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhh
Q 003473 563 VVEKIDFIHAVERSIAGIEKKT 584 (817)
Q Consensus 563 ~It~~d~~~Al~rvi~g~e~k~ 584 (817)
..|+.||.+|+.+++.|..+-+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998876543
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-45 Score=406.24 Aligned_cols=228 Identities=45% Similarity=0.760 Sum_probs=215.3
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
...+++|.|+.|++....+|.+++.++++|+.|..+|..||+||||+||||||||+||+|+|+|+++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC----CcEEEEEEcCC
Q 003473 406 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNR 481 (817)
Q Consensus 406 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~----~~VIVIaATN~ 481 (817)
+.|++++++|++|++|+..+|||+||||||+++++|.. +..+..++++.|||+.||++... .+|+||+||||
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR 338 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR 338 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC
Confidence 99999999999999999999999999999999999874 34556678999999999988654 67999999999
Q ss_pred CCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 003473 482 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 482 pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 559 (817)
||.|||||+|+||||+.|.+..|+..+|.+||+..+++ +.++.++|+..||+.|+||.||||..+|.+|+..|.++
T Consensus 339 PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 339 PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999965 56788999999999999999999999999999999875
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=367.01 Aligned_cols=251 Identities=44% Similarity=0.700 Sum_probs=236.9
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
.+.|.+++.||.|++-.|++++|.|+. |.+.+.|.+.|..||+|||||||||||||+||||+|+.....|+.+.+|+|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456889999999999999999999998 8888999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.+|.|++...+|++|..|+.++|+||||||||++..+|-+.. .+.+.+..+++-.||++||||+...+|-||.|||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 999999999999999999999999999999999998875432 4667888999999999999999999999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.|||||+||||+||.|+|++||..+++-++.....+ +.+.+++|++.+..+.+..||+||..+|++|.+.|.|+++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 999999999999999999999999999999988876 467899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003473 564 VEKIDFIHAVERSIA 578 (817)
Q Consensus 564 It~~d~~~Al~rvi~ 578 (817)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999977653
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-44 Score=365.42 Aligned_cols=251 Identities=41% Similarity=0.663 Sum_probs=238.9
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
+..|..|++-|.|++...++++|+++. .++|+.|..+|...|+|+|||||||||||+||+|+|....+.|+.+|+++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445677899999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.+|.|++...+|++|-.|+.++|+|||.||||+++..|..+. .+++.+..+++-.||+++|||+...++-||.|||+.|
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999886553 4578889999999999999999999999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.|||||+||||.||.|+|++|+.+.|.+||+.|.++. .+...+++..+|....|.||+++..+|.+|.++|.|+.+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 9999999999999999999999999999999999774 56789999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003473 564 VEKIDFIHAVERSIA 578 (817)
Q Consensus 564 It~~d~~~Al~rvi~ 578 (817)
+|++||+-|+.+++.
T Consensus 376 vtqedfemav~kvm~ 390 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQ 390 (404)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999999874
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=403.98 Aligned_cols=250 Identities=40% Similarity=0.651 Sum_probs=225.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
.++.|+|+|+||.|++++|.++.+-+.. |++|+.|. .|.++-.|||||||||||||++|||+|.|+...|+++.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3567899999999999999999999988 88888764 478888899999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--CCCcEEEEEEcC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATN 480 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~~~~VIVIaATN 480 (817)
.+||+|++++++|++|++||..+|||||+||+|.+++.|+... .+.....+++.|||.||||.. +...|.||+|||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 9999999999999999999999999999999999999998653 345578899999999999998 467899999999
Q ss_pred CCCCCCcccCCCCccceEEEeeCCC-HHHHHHHHHHHHhcCCCCCcccCCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHH
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMT-TGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 481 ~pd~LDpALlRpGRFdr~I~V~~Pd-~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t-~G~SgaDL~~Lv~eAal~A~r 558 (817)
|||.|||||+||||||..+++..++ .+.+..+|+...++ +.++++||+.+||+.+ +.|||||+..+|..|.+.|.+
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Aik 897 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIK 897 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999885 56677889888866 5789999999999998 579999999999999999987
Q ss_pred hC-----------------CccccHHHHHHHHHHHhc
Q 003473 559 LN-----------------KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 559 ~~-----------------~~~It~~d~~~Al~rvi~ 578 (817)
+. .-.|+++||.+|+++...
T Consensus 898 R~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 898 RTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 62 235889999999987543
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=364.97 Aligned_cols=251 Identities=38% Similarity=0.648 Sum_probs=235.5
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
...|+-+++||.|++...++|.|.+-. +.++++|..+|.++|+|+|+|||||||||++|+|.|...+..|..+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456778899999999999999876655 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.||.|.+++.+|+.|..|+..+|+||||||+|+++.+|-.+- ..++.+..+++-.||+++|||.++..|-||||||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999885542 3567788999999999999999999999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.|||||+|.||+||.|+|+.|+.+.|.+|++.|.++. ...+|++++++|+.|++|+|+++..+|-+|.+.|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 9999999999999999999999999999999999874 56899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003473 564 VEKIDFIHAVERSIA 578 (817)
Q Consensus 564 It~~d~~~Al~rvi~ 578 (817)
|+.+||.+++..+.+
T Consensus 400 v~heDfmegI~eVqa 414 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQA 414 (424)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999876653
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=371.91 Aligned_cols=252 Identities=41% Similarity=0.680 Sum_probs=239.2
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
+..|.-||+|+.|++...++++|.|+. |.+|+.|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 556778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.+|.|.+++.+|++|.-|..++|+|+||||||+++.+|-+.. .++..|..+++-.||+++|||+++..|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 999999999999999999999999999999999999885542 4567788899999999999999999999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.|||||+||||+||.|.|+.||...+..|+..|..+ +.+..+++++.+...-..+|||||..+|.+|.++|.|+.+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999876 467899999999998899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 003473 564 VEKIDFIHAVERSIAG 579 (817)
Q Consensus 564 It~~d~~~Al~rvi~g 579 (817)
++++||..|.++++..
T Consensus 414 vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998753
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.4e-43 Score=361.09 Aligned_cols=241 Identities=39% Similarity=0.622 Sum_probs=221.1
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+..+.+||+||+|++++|...+-++.+|.+|++|.. =.|++||||||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 556789999999999999999999999999998754 46899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
.|+|.++.+++++|+.|++.+|||+||||+|+++-+|.-.. .-.....++|.||++|||...+.+|+.|||||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe---lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE---LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH---hcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 99999999999999999999999999999999987764221 122346789999999999999999999999999999
Q ss_pred CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHH-HHHHHHHHHHHHhCCcc
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 563 (817)
Q Consensus 485 LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~-~Lv~eAal~A~r~~~~~ 563 (817)
||+|+++ ||...|+|.+|+.++|..|++.++++ +|++-+.+++.++..|.||||+||. .++..|...|..+++..
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~--~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKK--FPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHh--CCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 99999999999999999999999976 4666678899999999999999995 67788889999999999
Q ss_pred ccHHHHHHHHHH
Q 003473 564 VEKIDFIHAVER 575 (817)
Q Consensus 564 It~~d~~~Al~r 575 (817)
|+.+|++.|+.+
T Consensus 343 v~~edie~al~k 354 (368)
T COG1223 343 VEREDIEKALKK 354 (368)
T ss_pred hhHHHHHHHHHh
Confidence 999999999987
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=372.89 Aligned_cols=245 Identities=38% Similarity=0.589 Sum_probs=222.0
Q ss_pred CCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
..+.++|+||+|++++|+-|+|.|.. +.-|+.| +-..+|.+|||++||||||||+||||||.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 45779999999999999999998877 6666644 446788999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC----CcEEEEEEcC
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATN 480 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~----~~VIVIaATN 480 (817)
+|-|++++.+|-+|+.|+.++|++|||||||+|+.+|++. ..++..+++-++||.+|||.... .-|.|+||||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999864 57788899999999999998652 2389999999
Q ss_pred CCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 481 ~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 560 (817)
.|+.||+||+| ||...|+|++|+.++|..+|+..++. .+++++++++.|+..++||||+||.++|++|.+.+.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999965 578899999999999999999999999999999998852
Q ss_pred -----------------CccccHHHHHHHHHHHhc
Q 003473 561 -----------------KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 561 -----------------~~~It~~d~~~Al~rvi~ 578 (817)
+..|++.||++|+.++-.
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 234788999999987643
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=377.99 Aligned_cols=252 Identities=42% Similarity=0.671 Sum_probs=234.0
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
+..|.++|+||+|++.+|++|++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999985 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
..|.|.++..++++|..|+..+||||||||||+++.++.+.. .+.+.+..+++.+++..||++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764321 2334566788999999999998888999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.|||+++||||||+.|+|++|+.++|..|++.++.+. .+..++++..++..|.||||+||.++|++|++.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 003473 564 VEKIDFIHAVERSIAG 579 (817)
Q Consensus 564 It~~d~~~Al~rvi~g 579 (817)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998754
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.4e-40 Score=367.72 Aligned_cols=254 Identities=47% Similarity=0.760 Sum_probs=234.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
...+.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455789999999999999999999877 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
..|.|.++..++.+|+.|+..+||||||||+|+++..+.+.. ...+.+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987775432 2234567788999999999998888999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.||++++||||||+.|.|++|+.++|.+||+.++.+. ++..++++..+|..|.||+|+||+++|++|++.|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~--~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999754 56678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchh
Q 003473 564 VEKIDFIHAVERSIAGIE 581 (817)
Q Consensus 564 It~~d~~~Al~rvi~g~e 581 (817)
|+.+||.+|++++..+..
T Consensus 360 i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred cCHHHHHHHHHHHhcccc
Confidence 999999999999876543
No 22
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.7e-41 Score=350.81 Aligned_cols=212 Identities=39% Similarity=0.530 Sum_probs=172.4
Q ss_pred cHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeeehhhhhhCCCCCccccccccCCCcccceeEEeccCcccc
Q 003473 565 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRY 644 (817)
Q Consensus 565 t~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~~~l~~~l~~~~~v~kvsi~pr~g~alG~~~~~~~~~~~ 644 (817)
|++||++|+++++.|.+++...+++++++++||||||||+|+ +++|..++|.++||+||+. ++||+.+.|.++.+
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva----~~l~~~~~v~~vsi~prg~-~~G~~~~~~~~~~~ 75 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVA----YLLPPADPVSKVSIVPRGS-ALGFTQFTPDEDRY 75 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHH----HHSSS---EEEEESSTTCC-CCHCCEECHHTT-S
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHH----HHhcccccEEEEEEecCCC-cceeEEeccchhcc
Confidence 689999999999999998888899999999999999999997 4678888999999999955 99999998888888
Q ss_pred hhhHHHHHhhhhhhcchhhHHHHhcC-CCcCCCcchHHHHHHHHHHHHHHHhcccCCCCcceecccCCCCCCCCCCCCCC
Q 003473 645 LLFIDELCGRLVTLLGGRAAEEVAYS-GRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPW 723 (817)
Q Consensus 645 ~~t~~~l~~~i~~lLgGraAEel~f~-~~~stGa~~Dl~~AT~lA~~mv~~~Gm~~~lg~~~~~~~~~~~~~~~~~~~~~ 723 (817)
..|+++|+++|+++|||||||+++|| +++|+|+++||++||+||+.||.+||||+++|++++.................
T Consensus 76 ~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~ 155 (213)
T PF01434_consen 76 IRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSR 155 (213)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EE
T ss_pred cccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeecccccccccccccccc
Confidence 89999999999999999999999995 48999999999999999999999999999999998865433110000000001
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhcccCHHHHHHH
Q 003473 724 GRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEW 781 (817)
Q Consensus 724 ~~~~~~~~~~i~~Ev~~ll~~a~~~A~~iL~~nr~~L~~lA~~LlekEtl~g~e~~~i 781 (817)
......+.+.+++||+++|++||++|++||++|++.|++||++|+++|+|+++||++|
T Consensus 156 ~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 156 RPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 1123456788999999999999999999999999999999999999999999999986
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=375.71 Aligned_cols=249 Identities=49% Similarity=0.777 Sum_probs=233.4
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~ 401 (817)
+....+.++|+|+.|++++|+.+++.+.+ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 44567889999999999999999999999 88899999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
+.++|+|++++.++.+|..|+..+||||||||+|++...|+.. .+....+++++||.+|++.....+|+||+|||+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999999999999999999988643 222336899999999999999999999999999
Q ss_pred CCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-
Q 003473 482 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN- 560 (817)
Q Consensus 482 pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~- 560 (817)
|+.||+|++||||||+.++|++||.++|.+|++.|+.+...++..++++..+++.|.||+|+||..+|++|++.+.++.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998766666789999999999999999999999999999999988
Q ss_pred CccccHHHHHHHHHH
Q 003473 561 KVVVEKIDFIHAVER 575 (817)
Q Consensus 561 ~~~It~~d~~~Al~r 575 (817)
...|+++||.+|+.+
T Consensus 468 ~~~~~~~~~~~a~~~ 482 (494)
T COG0464 468 RREVTLDDFLDALKK 482 (494)
T ss_pred cCCccHHHHHHHHHh
Confidence 788999999999987
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=368.10 Aligned_cols=251 Identities=42% Similarity=0.686 Sum_probs=233.1
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
+..|.++|+||.|+++++++|++++.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
..|.|.++..++++|..|+...||||||||||+++.++.... .+.+.+..+++.++|.+||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999998765432 2345566788899999999998888999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.||++++||||||+.|+|++|+.++|.+||+.++.+. .+.++++++.++..+.||||+||.++|++|++.|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 003473 564 VEKIDFIHAVERSIA 578 (817)
Q Consensus 564 It~~d~~~Al~rvi~ 578 (817)
|+++||..|+++++.
T Consensus 412 Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 412 VTQADFRKAKEKVLY 426 (438)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999864
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.7e-39 Score=386.14 Aligned_cols=249 Identities=46% Similarity=0.806 Sum_probs=228.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
...+.++|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
++|+|.++..++.+|..|+...||||||||||+++..++... .+...++++++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999998876432 23456789999999999998888999999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC---
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 560 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~--- 560 (817)
.||++++||||||+.|++++|+.++|.+||+.++++ .++.++++++.+|..|.||||+||.++|++|++.|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999865 567889999999999999999999999999999998742
Q ss_pred ---------------CccccHHHHHHHHHHHhc
Q 003473 561 ---------------KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 561 ---------------~~~It~~d~~~Al~rvi~ 578 (817)
...|+++||.+|+.++..
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987543
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-39 Score=365.70 Aligned_cols=226 Identities=42% Similarity=0.663 Sum_probs=213.3
Q ss_pred CccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 003473 328 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 406 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~ 406 (817)
..++|+||.|+.++|+.|++++++ -+.|.-|...+.+.+.|||||||||||||+||-|+|..++..|+++.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 349999999999999999999999 7889999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 407 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 407 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
.|.++..+|++|.+|+..+|||+|+||+|.++++|+.+ +.....+++||||++|||.+.-.+|.|+|||.|||.||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 99999999999999999999999999999999999764 33445789999999999999999999999999999999
Q ss_pred cccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 003473 487 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 487 pALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 559 (817)
|||+||||+|+.++.+.|+..+|.+|++...+. +.++.++|++.+|..|+|||||||..++..|.+.|..+
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998865 36788999999999999999999999999999888653
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.7e-38 Score=359.35 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=215.0
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 406 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~ 406 (817)
.+.++|+||+|++.+|++|.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+...|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35688999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 407 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 407 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
+|.++.+++++|..|+..+||||||||||.+...++.. +......+++++++..|+. .+.+|+||||||+++.||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999988654321 2345567889999999984 356799999999999999
Q ss_pred cccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccH
Q 003473 487 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 566 (817)
Q Consensus 487 pALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~ 566 (817)
++++|+||||+.++|++|+.++|.+||+.|+.+.......+.+++.+|..|.||||+||+++|++|+..|..++ ..++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 99999999999999999999999999999998754333457899999999999999999999999999998766 45899
Q ss_pred HHHHHHHHHHhc
Q 003473 567 IDFIHAVERSIA 578 (817)
Q Consensus 567 ~d~~~Al~rvi~ 578 (817)
+||..|+.++..
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999987653
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.5e-37 Score=343.25 Aligned_cols=249 Identities=50% Similarity=0.774 Sum_probs=229.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
...+.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456789999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
..|.|.+...++.+|+.++...||||||||+|.++..+.+.. ...+.+..+++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2335566788999999999988778899999999999
Q ss_pred CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcc
Q 003473 484 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 563 (817)
Q Consensus 484 ~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 563 (817)
.+|++++||||||+.|.|+.|+.++|.+|++.++.+. .+.+++++..++..|.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~--~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC--CCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999998653 55677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 003473 564 VEKIDFIHAVERS 576 (817)
Q Consensus 564 It~~d~~~Al~rv 576 (817)
|+.+||..|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=335.43 Aligned_cols=229 Identities=37% Similarity=0.624 Sum_probs=206.5
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~ 401 (817)
+..+.|+|.|+||+|++.+|+.|+|.|-. ++-|+.|. -..+|.+|+||||||||||++||+|+|.|++..||++|.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 34557899999999999999999998876 67776654 35567899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC-CCcEEEEEEcC
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 480 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN 480 (817)
++++|.|++++.++.+|+.|+.+.|+||||||||.++..|.. ..++..+++-..||.+|.|... +.+|+|++|||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 999999999999999999999999999999999999988864 3566778899999999999865 57899999999
Q ss_pred CCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 481 ~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 559 (817)
-|+.||.|++| ||++.|++++|+...|..+++.|+..-...+. +.|+..|++.|+||||+||.-+|+.|.+.-.|+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT-~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLT-EQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccc-hhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 99999999999999999999999987665554 448999999999999999999999998887664
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=335.83 Aligned_cols=229 Identities=41% Similarity=0.633 Sum_probs=210.0
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 400 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s 400 (817)
+.+..-.|+|+||.|+++++++|++.|.. ++.|+.|...+ .++|+|||||||||||||++|+|+|.++|.+|+.++.+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 34556689999999999999999998887 89999885332 47899999999999999999999999999999999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc--EEEEEE
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGA 478 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~--VIVIaA 478 (817)
.+.++|.|++.+.++.+|..|.+-.||||||||+|.+.+.|+ ...++.....-+++....||+.++.+ |+|+||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 999999999999999999999999999999999999998884 24677778888999999999988665 999999
Q ss_pred cCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 003473 479 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 479 TN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 558 (817)
||+|..||.|++| |+.++++|+.|+.++|.+||+..+++. ++.+++|+..+|..|.||||.||.++|..|+....|
T Consensus 238 TNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ir 313 (386)
T KOG0737|consen 238 TNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIR 313 (386)
T ss_pred CCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHH
Confidence 9999999999999 999999999999999999999999875 567999999999999999999999999999988776
Q ss_pred h
Q 003473 559 L 559 (817)
Q Consensus 559 ~ 559 (817)
+
T Consensus 314 e 314 (386)
T KOG0737|consen 314 E 314 (386)
T ss_pred H
Confidence 3
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-38 Score=328.55 Aligned_cols=249 Identities=42% Similarity=0.668 Sum_probs=232.3
Q ss_pred CCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
....++|+.+.|.-+...++++.++. +.+|+.|.++|.++|+|++||||||||||++|+++|..+|+.|+.++.+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999998887 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
.|.|+.+..+|+.|..|+...|||||+||||+++..+-. .....+.+..+||..|+++||+|+...+|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 999999999999999999999999999999999987732 2345678899999999999999999999999999999999
Q ss_pred CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccc
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 564 (817)
Q Consensus 485 LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 564 (817)
|||+|+||||+|+.+++++|+...|..|++.|... +.....+|.+.+.+.++||.|+|+++.|.||-+.|.++.+..+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 99999999999999999999999999999999864 4556678899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHh
Q 003473 565 EKIDFIHAVERSI 577 (817)
Q Consensus 565 t~~d~~~Al~rvi 577 (817)
-++|+..++.++-
T Consensus 362 l~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 362 LHEDFMKLVRKQA 374 (388)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999987653
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.6e-35 Score=338.74 Aligned_cols=266 Identities=34% Similarity=0.561 Sum_probs=216.3
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 393 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------- 393 (817)
+.+..|.++|+||+|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 44667899999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred --EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC
Q 003473 394 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 467 (817)
Q Consensus 394 --fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 467 (817)
|+.++++++..+|+|.++..++.+|+.|+.. .||||||||+|+++++|+.. ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999999864 69999999999999877532 23444567889999999999
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc---------CCHHHHHh---
Q 003473 468 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 535 (817)
Q Consensus 468 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~d---------vdl~~LA~--- 535 (817)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++.. .+++.++ .++..++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999865 2344211 11222211
Q ss_pred --------------------------hcCCCCHHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHHHhcchhhhhh
Q 003473 536 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIEKKTA 585 (817)
Q Consensus 536 --------------------------~t~G~SgaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi~g~e~k~~ 585 (817)
.++.+||++|+++|.+|...|.++ +...|+++|+..|+......-+.-..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~ 487 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPN 487 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCC
Confidence 245678888888888888777754 34577888888888776654444333
Q ss_pred hhccchh
Q 003473 586 KLKGSEK 592 (817)
Q Consensus 586 ~ls~~ek 592 (817)
.-.+++-
T Consensus 488 ~~~~~~w 494 (512)
T TIGR03689 488 TTNPDDW 494 (512)
T ss_pred CCCHHHH
Confidence 3333333
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=311.91 Aligned_cols=236 Identities=44% Similarity=0.667 Sum_probs=219.9
Q ss_pred CccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 003473 328 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 406 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~ 406 (817)
+.++ +++.|.......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++|+|++.++.++.+++++++..|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcC-CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003473 407 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 485 (817)
Q Consensus 407 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 485 (817)
.|++++.+|..|++|.+++ |+||||||||+++++|... ++...++..+|++.||+.....+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988542 224578899999999999988999999999999999
Q ss_pred CcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 003473 486 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 565 (817)
Q Consensus 486 DpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It 565 (817)
|++++| ||||+.+.+..|+..+|.+|++.+.++.+ +.+++++..+|..|.||.|+||..+|.+|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999998754 457899999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHh
Q 003473 566 KIDFIHAVERSI 577 (817)
Q Consensus 566 ~~d~~~Al~rvi 577 (817)
+++|..|...+.
T Consensus 406 ~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 406 LEIFQEALMGIR 417 (693)
T ss_pred HHHHHHHHhcCC
Confidence 888888886643
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=327.13 Aligned_cols=249 Identities=41% Similarity=0.644 Sum_probs=221.3
Q ss_pred CCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 399 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~ 399 (817)
....++|++|+|++.++.+|+|.|.+ |..|+.|..++..+|+||||+||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34578999999999999999999998 999999999999999999999999999999999999987 578888899
Q ss_pred hhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 400 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 400 s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.+..++|+|+.+..++.+|+.|++..|+|||+||||-|.+.|... .......++..||..|||...++.|+||+||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk----qEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK----QEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch----HHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 999999999999999999999999999999999999999887532 3445567889999999999999999999999
Q ss_pred CCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 003473 480 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 480 N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 559 (817)
|||+.+||||+||||||+.+++++|+.+.|.+|+..|-++..-++.. .-+..+|..|.||-|+||+.+|.+|++.+.++
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~-~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR-ELLLWLAEETSGYGGADLKALCTEAALIALRR 492 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCH-HHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999998876533333 34788999999999999999999999999886
Q ss_pred CC----------------ccccHHHHHHHHHHHhcc
Q 003473 560 NK----------------VVVEKIDFIHAVERSIAG 579 (817)
Q Consensus 560 ~~----------------~~It~~d~~~Al~rvi~g 579 (817)
.- ..|...||..|+.+....
T Consensus 493 ~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 493 SFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred ccCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 42 235667777777665543
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.8e-32 Score=295.05 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=192.9
Q ss_pred Cccccccc-cCchHhHHHHHHHHHHhcChhHH-hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 328 DTITFADV-AGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 328 ~~vtf~DV-~G~eeaKeeL~eiV~~Lk~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
..-+|+++ .|+--++.-+..++..+. +.| ...+.++|++++||||||||||++|+++|+++|++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 566666666665553321 112 23678999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHh-----cCCeEEEEccccchhhccCCccccccchHHHHHH-HHHHhhccCC------------
Q 003473 406 YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------ 467 (817)
Q Consensus 406 ~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-n~LL~emdg~------------ 467 (817)
|+|++++.+|++|..|+. .+||||||||||++++.++.. ......+.+ .+|++.||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999999999976 469999999999999887532 222334454 7888888753
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCC----CCHH
Q 003473 468 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGA 543 (817)
Q Consensus 468 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G----~Sga 543 (817)
....+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+..++| |.||
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhH
Confidence 34567999999999999999999999999865 589999999999999987654 3 4678888888877 5676
Q ss_pred HHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHhcchhhhhhhhccchhhHHHhhhccceeee
Q 003473 544 DLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVG 606 (817)
Q Consensus 544 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~e~k~~~ls~~ek~~vA~HEaGHAlv~ 606 (817)
--..+..++...-..+- ..+. +.+.+....++...+..-...+-..-|+||.++.
T Consensus 339 lrar~yd~~v~~~i~~~----g~~~----~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 339 LRARVYDDEVRKWIAEV----GVEN----LGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHHHHHHh----hHHH----HHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 66677666665443321 1111 2222222222233344444455666788888875
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-31 Score=322.75 Aligned_cols=245 Identities=50% Similarity=0.803 Sum_probs=221.1
Q ss_pred CCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
.+.++|+||+|++++++.|++++.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003473 406 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 485 (817)
Q Consensus 406 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 485 (817)
|.|.....++.+|+.|....||||||||||.+..+++.. ..+...+++++|+..|+++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999876532 2233457889999999999888899999999999999
Q ss_pred CcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-----
Q 003473 486 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 560 (817)
Q Consensus 486 DpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~----- 560 (817)
|++++|+|||++.+.++.|+.++|.+||+.+.+. .++.++++++.++..+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988864 566778899999999999999999999999998887642
Q ss_pred --------------CccccHHHHHHHHHHHh
Q 003473 561 --------------KVVVEKIDFIHAVERSI 577 (817)
Q Consensus 561 --------------~~~It~~d~~~Al~rvi 577 (817)
...++++||..|+..+.
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhcc
Confidence 12477889999987654
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=301.88 Aligned_cols=249 Identities=35% Similarity=0.567 Sum_probs=211.7
Q ss_pred CCccccccc--cCchHhHHHHH-H-HHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeechh
Q 003473 327 GDTITFADV--AGVDEAKEELE-E-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASE 401 (817)
Q Consensus 327 ~~~vtf~DV--~G~eeaKeeL~-e-iV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-pfi~is~s~ 401 (817)
.|...|+++ .|++..-..+- + ++...-.|+.-.++|.+.-+|+|||||||||||++||.+..-++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 466778775 57776666552 2 333366678888999999999999999999999999999998863 445689999
Q ss_pred hHHHhhccchHHHHHHHHHHHhc--------CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003473 402 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 473 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 473 (817)
+.++|+|++++.+|++|..|.+. .--||++||||+++++|+.. .++.....+++||||.-|||.+.-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998642 12399999999999999753 344556678999999999999998999
Q ss_pred EEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHHhhcCCCCHHHHHHHHHH
Q 003473 474 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGFTGADLANLVNE 551 (817)
Q Consensus 474 IVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 551 (817)
+||+-|||.|.||+||+|||||.-++++.+||...|.+||+.|.++. +-.+.+|+|+.+||.+|..||||+|+.+|+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998652 2348899999999999999999999999999
Q ss_pred HHHHHHHhC---------------CccccHHHHHHHHHHHh
Q 003473 552 AALLAGRLN---------------KVVVEKIDFIHAVERSI 577 (817)
Q Consensus 552 Aal~A~r~~---------------~~~It~~d~~~Al~rvi 577 (817)
|.-.|..+. +-.|+++||..|++.+-
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 988886541 24588999999998754
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=289.21 Aligned_cols=228 Identities=38% Similarity=0.598 Sum_probs=200.8
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
....+.|.|+|++|++.+|..+.+++.+ +..|+.|..+ ..+++|+||.||||||||+|++|||.|.+..|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3455679999999999999999999988 5557776543 3567899999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC--CCcEEEEEEcC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATN 480 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--~~~VIVIaATN 480 (817)
.++|+|.+++.++.+|+-|+...|+||||||||.+..+|.. ..++...+...++|.++++... +.+|+||+|||
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999988843 3455566788888888887654 46899999999
Q ss_pred CCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 481 ~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 559 (817)
+|+.+|.+++| ||.+.++|++|+.+.|..+++..+.+.+..+ .+.|++.|++.|+|||+.||.++|.+|++.-.+.
T Consensus 299 ~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 299 RPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred CchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 99999999999 9999999999999999999999998864433 3458999999999999999999999998655443
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=1.6e-21 Score=210.58 Aligned_cols=212 Identities=20% Similarity=0.290 Sum_probs=164.8
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeechh
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 401 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkALA~e~-------gvpfi~is~s~ 401 (817)
+++++|++++|+++++++.++..+..+...|..+| .++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999998777777777777554 348999999999999999999875 23799999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
+...|+|..+..++.+|+.|. ++||||||+|.+.+.++ .++.....++.|+..|+... .+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 999999998888888888864 46999999999975432 12233567788888887433 45788888764
Q ss_pred CC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHh----h--cCCCC-HHHHHHHH
Q 003473 482 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS----M--TTGFT-GADLANLV 549 (817)
Q Consensus 482 pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~----~--t~G~S-gaDL~~Lv 549 (817)
.. .++|+|.+ ||+.+|.|++|+.+++.+|++.++.+.+..+.++. ...+.. . .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999988776666654 222322 1 23344 89999999
Q ss_pred HHHHHHHH
Q 003473 550 NEAALLAG 557 (817)
Q Consensus 550 ~eAal~A~ 557 (817)
+.|...-.
T Consensus 248 e~~~~~~~ 255 (287)
T CHL00181 248 DRARMRQA 255 (287)
T ss_pred HHHHHHHH
Confidence 98875543
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=1.3e-21 Score=208.08 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=162.6
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeech
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 400 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi~is~s 400 (817)
.+++++|++++|+++++++.+..........|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36899999999999999999876655555566653 3468999999999999999999864 2478999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
++...|+|.....++++|+.|. ++||||||+|.|.+.. ..+.....++.|+..|+... ..+++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998874 4699999999996421 12223557888899888643 4456666654
Q ss_pred CCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh---------cCCCCHHHHH
Q 003473 481 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 546 (817)
Q Consensus 481 ~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~---------t~G~SgaDL~ 546 (817)
..+ .++|+|.+ ||+..|.++.++.+++.+|++.++...+..+++++ ++.++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 47889988 99999999999999999999999987766666654 3444221 1123678888
Q ss_pred HHHHHHHHHHH
Q 003473 547 NLVNEAALLAG 557 (817)
Q Consensus 547 ~Lv~eAal~A~ 557 (817)
++++.|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 99888776553
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-21 Score=211.34 Aligned_cols=237 Identities=26% Similarity=0.369 Sum_probs=181.6
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 407 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~v 407 (817)
.+-.|++|+-....+..|+++...-.|.+. ...+-++||||||||||||++|+-||...|..+-.+.+.++.-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998877655443 34566889999999999999999999999999998888876532 2
Q ss_pred ccchHHHHHHHHHHHhcCCe-EEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 408 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 408 G~~~~~vr~lF~~A~~~aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
.++...+.++|+.|++.... +|||||.|++...|... ..++..+..||.||-.-. +....++++.+||+|..||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt---ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh---hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34556789999999876544 88999999998887642 356677889999987643 2335688888999999999
Q ss_pred cccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC----------------------CCccc---CCHHHHHhhcCCCC
Q 003473 487 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL----------------------PLAKD---IDLGDIASMTTGFT 541 (817)
Q Consensus 487 pALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l----------------------~l~~d---vdl~~LA~~t~G~S 541 (817)
.|+-. |||..|+|++|..++|..||..++.+.-. .+..+ -.+.+.|+.|.|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99988 99999999999999999999999876311 11111 12456789999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 576 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 576 (817)
|++|..|+-.....+.-+....++..-|++.++-.
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 99999998654433333444555665566555443
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=217.23 Aligned_cols=207 Identities=29% Similarity=0.379 Sum_probs=162.2
Q ss_pred ccccccccCchHhHHHHH-HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 003473 329 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 407 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~-eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~v 407 (817)
+-||+.|+-..+.|++|. ++.+|++..+-|.+.|..--+|.|||||||||||+++.|+|++++..++-++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 389999999999999985 577789999999999999999999999999999999999999999999888776542
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccc--cccc-hHHHHHHHHHHhhccCCCCCC--cEEEEEEcCCC
Q 003473 408 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR--IVSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 482 (817)
Q Consensus 408 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~--~~~~-~e~~~~Ln~LL~emdg~~~~~--~VIVIaATN~p 482 (817)
.... ++.++..+. ..+||+|.+||+-..-+..... ...+ ....-+|..||+.+||..+.+ --|||.|||++
T Consensus 273 -~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2233 777776653 3479999999997543322111 0111 123468999999999997766 46888899999
Q ss_pred CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCC-CCCcccCCHHHHHhhcCC--CCHHHHHHH
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-LPLAKDIDLGDIASMTTG--FTGADLANL 548 (817)
Q Consensus 483 d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~-l~l~~dvdl~~LA~~t~G--~SgaDL~~L 548 (817)
+.|||||+||||.|.+|++...+..+-..+++.++.-.. .++ .+++.+...+ .|+||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L-----~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL-----FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch-----hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999986532 223 3344433333 589998544
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=3.3e-21 Score=207.89 Aligned_cols=211 Identities=20% Similarity=0.305 Sum_probs=165.7
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhhCCCC---CCeEEEEcCCCCcHHHHHHHHHHhcC-------CcEEEeechhhH
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 403 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkALA~e~g-------vpfi~is~s~~~ 403 (817)
+++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|..+. .+|+.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999988762 379999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 482 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p- 482 (817)
..+.|..+..++++|++|. ++||||||+|.+.+.++ ..+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC------ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888899998874 46999999999864332 1223345677888888743 3567888887643
Q ss_pred -C---CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh-------cCCCCHHHHHHHHHH
Q 003473 483 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 551 (817)
Q Consensus 483 -d---~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgaDL~~Lv~e 551 (817)
+ .++|+|.+ ||+..|.|+.++.+++..|++.++.+.+..+.++. +..+..+ ..--++++++++++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988665555443 3344433 222368999999999
Q ss_pred HHHHHHH
Q 003473 552 AALLAGR 558 (817)
Q Consensus 552 Aal~A~r 558 (817)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8765543
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2e-21 Score=182.27 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC-CeEEEEccccchhhccCCcccc
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 447 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 447 (817)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.....++++|.+++... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998889999999999999999988 99999999999998762 2
Q ss_pred ccchHHHHHHHHHHhhccCCCCC-CcEEEEEEcCCCCCCCcccCCCCccceEEEeeC
Q 003473 448 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 503 (817)
Q Consensus 448 ~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~ 503 (817)
..+......+++|+..++..... .+++||++||.++.++++++| +||++.|++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 35566778899999999987765 569999999999999999998 89999999874
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.5e-20 Score=210.11 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=161.7
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-------
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE------- 404 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~------- 404 (817)
=.|..|++++|+++.|.+.-.+.... ....-+||+||||+|||+|++++|..+|.+|+.++...+.+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 36899999999999887766433211 12235899999999999999999999999999999876554
Q ss_pred --HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCc----cccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 405 --LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 405 --~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
.|+|..+.++-+-+++|...+| +++|||||.++.+-++. +++..++|++..++.-+-+++ |+ -+.|+||||
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~-yD-LS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP-YD-LSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc-cc-hhheEEEee
Confidence 6999999999999999999999 99999999999876554 345556666666666555554 33 267999999
Q ss_pred cCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 003473 479 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 479 TN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 558 (817)
+|..+.|+.+|+. |.. .|.+.-+..++..+|.+.|+-.+ .+.-..|....--++...|..+++...+.|.-
T Consensus 473 ANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk------~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 473 ANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPK------QLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred cCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchH------HHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 9999999999998 764 88999999999999999997332 11111111112236667788888887777765
Q ss_pred hC
Q 003473 559 LN 560 (817)
Q Consensus 559 ~~ 560 (817)
|+
T Consensus 544 R~ 545 (782)
T COG0466 544 RN 545 (782)
T ss_pred hH
Confidence 54
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.81 E-value=5.3e-19 Score=194.10 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=165.6
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
..++.+|+|++|+++.++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 345668999999999999999888654322 34577899999999999999999999999998877665332
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc------cC-CC------CCCc
Q 003473 406 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM------DG-FD------SNSA 472 (817)
Q Consensus 406 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em------dg-~~------~~~~ 472 (817)
....+..++... ..++||||||||.+.... .+.+..++... +. .. .-.+
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122344444433 346799999999985321 11222222211 10 00 0134
Q ss_pred EEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHH
Q 003473 473 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 552 (817)
Q Consensus 473 VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 552 (817)
+.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...++.+++++ ++.|+..+.| +++.+.++++.+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHHH
Confidence 7889999999999999987 99989999999999999999999988777776664 7889999987 568999999988
Q ss_pred HHHHHHhCCccccHHHHHHHHHH
Q 003473 553 ALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 553 al~A~r~~~~~It~~d~~~Al~r 575 (817)
...|..++...|+.+++..+++.
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 88887777778999999998865
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=7.8e-19 Score=189.94 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=158.2
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccc
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 410 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~ 410 (817)
+|+|++|++++++.|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998887543321 235667999999999999999999999999887766543211
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC----------------CCCcEE
Q 003473 411 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 474 (817)
Q Consensus 411 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------------~~~~VI 474 (817)
...+...+... ..+.||||||+|.+....+ .. |+..|+.+. ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~------------e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE------------EL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH------------HH---hhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 3467999999999864321 11 222222111 113478
Q ss_pred EEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 003473 475 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 554 (817)
Q Consensus 475 VIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 554 (817)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...++.++++ .++.+++.+.| +++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 9988999999999999999999988766666655 37788999888 55888899998887
Q ss_pred HHHHhCCccccHHHHHHHHHH
Q 003473 555 LAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 555 ~A~r~~~~~It~~d~~~Al~r 575 (817)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 887777777999999988876
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=3.4e-19 Score=184.18 Aligned_cols=196 Identities=26% Similarity=0.366 Sum_probs=133.6
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
.+.-++.+|+|++|++++++.++-++...+.. .....++|||||||+|||+||+.+|++++++|...++..+.
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 34456779999999999999998877664331 23455799999999999999999999999999998886432
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CC-----
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SN----- 470 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~----- 470 (817)
. ...+..++...+ ...||||||||.+.+..+ ..|+..|+.+. .+
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEeccccccceee
Confidence 1 233444444443 346999999999975432 33455555431 11
Q ss_pred ---CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHH
Q 003473 471 ---SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 547 (817)
Q Consensus 471 ---~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 547 (817)
.++.+|+||++...|.+.|+. ||.....+..++.++..+|++......+++++++. ...||+++.| +++-..+
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAnr 220 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIANR 220 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHHH
Confidence 358899999999999999998 99988899999999999999998877777766653 6789999988 8888888
Q ss_pred HHHHHH
Q 003473 548 LVNEAA 553 (817)
Q Consensus 548 Lv~eAa 553 (817)
+++.+.
T Consensus 221 ll~rvr 226 (233)
T PF05496_consen 221 LLRRVR 226 (233)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877654
No 49
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.6e-19 Score=188.01 Aligned_cols=239 Identities=24% Similarity=0.299 Sum_probs=176.4
Q ss_pred cccccCchHhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeech
Q 003473 332 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 400 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s 400 (817)
|+.++--...|++|...+.. +.-.++-..-. ....+-+||+||||||||+|+||+|+.+ ...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66777777888888776654 32222211111 2234569999999999999999999976 3567899999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcC---Ce--EEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEA---PS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 475 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 475 (817)
.+.++|.+++.+.+..+|++..... .+ .++|||+++|+..|............-+++|.+|++||......+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999886532 22 566899999998875443333334456899999999999999999999
Q ss_pred EEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc---CCCCCccc--------C-----CHHHHHh-hcC
Q 003473 476 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK---KELPLAKD--------I-----DLGDIAS-MTT 538 (817)
Q Consensus 476 IaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~---~~l~l~~d--------v-----dl~~LA~-~t~ 538 (817)
++|+|-.+.||.|+.. |-|-+.+|++|+...+.+|++..+.+ .++-+... + ....+.. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 99999999999999999999987654 12211111 1 1222233 358
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 539 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 539 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
|.||+.|+.+=-.|-.. --....|+.++|..|+-
T Consensus 379 gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALL 412 (423)
T ss_pred CCccchHhhhhHHHHHh--ccCCCccChHHHHHHHH
Confidence 99999998875544322 22335788888887764
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-17 Score=192.69 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=194.7
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEE
Q 003473 352 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 431 (817)
Q Consensus 352 Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 431 (817)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+...++.|......+.+|..++..+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 35567788999999999999999999999999999999 77678899999999999999999999999999999999999
Q ss_pred ccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHH
Q 003473 432 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 511 (817)
Q Consensus 432 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ 511 (817)
||+|.+.+.+.. .........+.+++..|++..... +++++.||++..+|+++++||||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455678899999999988444 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC------CccccHHHHHHHHHHHhc
Q 003473 512 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 512 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~------~~~It~~d~~~Al~rvi~ 578 (817)
|+..+... +.+..+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99999854 455667899999999999999999999999998888875 355788999999988643
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=5.1e-18 Score=185.88 Aligned_cols=209 Identities=30% Similarity=0.419 Sum_probs=147.0
Q ss_pred cCCCccccccccCchHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003473 325 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKee---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~ 401 (817)
..-++.+|+|++|+++...+ |.++++ .....+++||||||||||+||+.||+..+.+|..+|+
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA-- 81 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA-- 81 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc--
Confidence 34456789999999987743 333332 2234469999999999999999999999999999988
Q ss_pred hHHHhhccchHHHHHHHHHHHhcC----CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003473 402 FVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 477 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 477 (817)
+-.+.+.+|++|+.|++.. ..||||||||.+.+..|+ .||-.|+ +..|++|+
T Consensus 82 -----v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD---------------~lLp~vE----~G~iilIG 137 (436)
T COG2256 82 -----VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD---------------ALLPHVE----NGTIILIG 137 (436)
T ss_pred -----ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh---------------hhhhhhc----CCeEEEEe
Confidence 3456688999999996543 469999999999876653 4555555 56788898
Q ss_pred Ec--CCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc------ccCCHHHHHhhcCCCCHHHHHHHH
Q 003473 478 AT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA------KDIDLGDIASMTTGFTGADLANLV 549 (817)
Q Consensus 478 AT--N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~------~dvdl~~LA~~t~G~SgaDL~~Lv 549 (817)
|| |..-.|.+||+++. +++.+.+.+.++...+++..+......+. ++-.++.++..+.| ..+-.-|++
T Consensus 138 ATTENPsF~ln~ALlSR~---~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~L 213 (436)
T COG2256 138 ATTENPSFELNPALLSRA---RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLL 213 (436)
T ss_pred ccCCCCCeeecHHHhhhh---heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHH
Confidence 88 66789999999943 47899999999999999985543322232 12235667777766 333333444
Q ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHh
Q 003473 550 NEAALLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 550 ~eAal~A~r~~~~~It~~d~~~Al~rvi 577 (817)
..+...+ +.+. .+..+++.+.+.+..
T Consensus 214 E~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 214 ELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred HHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 4444444 2232 333667776665543
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=5.8e-18 Score=205.17 Aligned_cols=164 Identities=28% Similarity=0.392 Sum_probs=127.4
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH---------
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 403 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~--------- 403 (817)
+|++|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 45999999999999876643211 112234799999999999999999999999999999876442
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccC-----CC--------CC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 470 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 470 (817)
..|+|....++.+.|..+....| ||||||||.+.+..++. ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24677778888889998877777 89999999998643321 12344554442 11 12
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHH
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 517 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l 517 (817)
+++++|+|||.++.|+++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999998 885 78999999999999998886
No 53
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=192.99 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=171.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCC
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 443 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 443 (817)
..-..+||+|+||||||++++++|.++|.+++.++|.++...-.+..+..+...|.+|+...|+|||+-++|.++.++.+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 44456999999999999999999999999999999999999888889999999999999999999999999999866543
Q ss_pred ccccccchHHHHHHHHHHhhccCCC-CCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC
Q 003473 444 RFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 522 (817)
Q Consensus 444 ~~~~~~~~e~~~~Ln~LL~emdg~~-~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l 522 (817)
+.+-...+.++.++. .|-+. ...+++||++|+..+.|++.+++ -|-..|.++.|+.++|.+||+.++...
T Consensus 509 ----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~-- 579 (953)
T KOG0736|consen 509 ----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL-- 579 (953)
T ss_pred ----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc--
Confidence 334445566777666 33333 45789999999999999999988 666789999999999999999999764
Q ss_pred CCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH---hC-----------------CccccHHHHHHHHHHH
Q 003473 523 PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR---LN-----------------KVVVEKIDFIHAVERS 576 (817)
Q Consensus 523 ~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r---~~-----------------~~~It~~d~~~Al~rv 576 (817)
.+..++.+..++.+|.||+.+|+..++..+-+.+.. +. ...++++||..|+.+.
T Consensus 580 ~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 580 PLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred ccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 678899999999999999999999998876333321 11 2578999999999874
No 54
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=190.42 Aligned_cols=232 Identities=24% Similarity=0.242 Sum_probs=177.3
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHHhhc
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVG 408 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~~~vG 408 (817)
.|++-...+|++..+ ....| .-.+.++||+||+|||||.|+++++.++ .+.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666777766544 22222 3345679999999999999999999987 456778899988776666
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhh-ccCC-CCCCcEEEEEEcCCCCCCC
Q 003473 409 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGF-DSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 409 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mdg~-~~~~~VIVIaATN~pd~LD 486 (817)
...+.++.+|..|.+++|+||++|++|.|....+.. .+..+...+.++.++.+ ++.| ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e--~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE--NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc--CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 667788999999999999999999999998732211 22333444444444432 2223 3345679999999999999
Q ss_pred cccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh----CCc
Q 003473 487 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 562 (817)
Q Consensus 487 pALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~----~~~ 562 (817)
|-|.+|++|+.++.++.|+..+|.+||+..+.+..... ..-|++.++..|+||...|+..++.+|...|..+ +.+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999998753211 1225666999999999999999999999888732 334
Q ss_pred cccHHHHHHHHHHHh
Q 003473 563 VVEKIDFIHAVERSI 577 (817)
Q Consensus 563 ~It~~d~~~Al~rvi 577 (817)
.++.++|.++++...
T Consensus 635 lltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFV 649 (952)
T ss_pred cchHHHHHHHHHhcC
Confidence 889999999998744
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=7.6e-18 Score=203.10 Aligned_cols=224 Identities=22% Similarity=0.283 Sum_probs=165.0
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 397 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~i 397 (817)
.+-++++++|.++..+.+.+++. .+...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 44578999999988886655442 2334579999999999999999999987 7789999
Q ss_pred echhhHH--HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003473 398 SASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 475 (817)
Q Consensus 398 s~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 475 (817)
+++.+.. .|.|..+.+++++|+.+....|+||||||||.+.+..... +++.. .-+.|...+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---~~~~~---~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---GGSMD---ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---CccHH---HHHHHHHHHh----CCCeEE
Confidence 9988874 7899999999999999988889999999999998654211 11111 1233444443 467999
Q ss_pred EEEcCCC-----CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHhhcCCCC-----
Q 003473 476 LGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT----- 541 (817)
Q Consensus 476 IaATN~p-----d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S----- 541 (817)
|+|||.. ..+|++|.| ||. .|.|+.|+.+++.+||+..... .++.+.++ .+..++..+..|-
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 9999864 357999999 997 7999999999999999976654 22334433 3566666555543
Q ss_pred HHHHHHHHHHHHHHHHHh----CCccccHHHHHHHHHHHh
Q 003473 542 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi 577 (817)
+.-...++++|+.....+ .+..|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 444567788876544322 245699999999998753
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=1.1e-17 Score=194.81 Aligned_cols=218 Identities=24% Similarity=0.305 Sum_probs=154.8
Q ss_pred ccccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------C
Q 003473 322 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------E 391 (817)
Q Consensus 322 ~~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------g 391 (817)
.+.+..++.+|+|++|++++.+.|+..+ . ...+.++||+||||||||++|++++.++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 4556778899999999999988887542 1 2345689999999999999999998642 4
Q ss_pred CcEEEeechhh-------HHHhhccch----------------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccc
Q 003473 392 VPFISCSASEF-------VELYVGMGA----------------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 448 (817)
Q Consensus 392 vpfi~is~s~~-------~~~~vG~~~----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 448 (817)
.+|+.++|... .+...+... .....++.+| ...+|||||||.+....+
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q------ 192 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM------ 192 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH------
Confidence 68999988631 111111100 0001122222 345999999999865432
Q ss_pred cchHHHHHHHHHHhhccCC--------------------------CCCCcE-EEEEEcCCCCCCCcccCCCCccceEEEe
Q 003473 449 SNDEREQTLNQLLTEMDGF--------------------------DSNSAV-IVLGATNRSDVLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 449 ~~~e~~~~Ln~LL~emdg~--------------------------~~~~~V-IVIaATN~pd~LDpALlRpGRFdr~I~V 501 (817)
+.|+..|+.. .....+ ++++|||.|+.|+|++++ |+. .+.+
T Consensus 193 ---------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f 260 (531)
T TIGR02902 193 ---------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFF 260 (531)
T ss_pred ---------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeC
Confidence 2333322110 001223 445566789999999998 764 7889
Q ss_pred eCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 502 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 502 ~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
++++.+++.+|++..+++.++.+++++ ++.++..+. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999999999988777776654 677777664 89999999999999998888889999999999854
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.6e-17 Score=172.40 Aligned_cols=217 Identities=23% Similarity=0.279 Sum_probs=171.5
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 406 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~ 406 (817)
-++-+|+|.+|++++|+.|+-++..-+. .....-++|||||||.|||+||..+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3467899999999999999988766433 2456778999999999999999999999999999888765532
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------C--------C
Q 003473 407 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 470 (817)
Q Consensus 407 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~--------~ 470 (817)
+..+-.++..... -+|+||||||++.+.- + .-|+-.|+.|. + -
T Consensus 91 ----~gDlaaiLt~Le~--~DVLFIDEIHrl~~~v------------E---E~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNLEE--GDVLFIDEIHRLSPAV------------E---EVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcCCc--CCeEEEehhhhcChhH------------H---HHhhhhhhheeEEEEEccCCccceEeccC
Confidence 2333344444333 3699999999986432 2 23344455442 1 1
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHH
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 550 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 550 (817)
.++-+|+||.+...|...|+. ||.....+..++.++..+|++......++.+.++ ...++|+++.| +++-...+++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 358899999999999999988 9999999999999999999999887766666655 36779999988 8899999999
Q ss_pred HHHHHHHHhCCccccHHHHHHHHHHHh
Q 003473 551 EAALLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 551 eAal~A~r~~~~~It~~d~~~Al~rvi 577 (817)
+..-.|.-++...|+.+-...|+....
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 999999989999999988888887643
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=181.40 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=156.2
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~ 396 (817)
++..++.+|+||+|++.+...|+..+.. .+.+..+||+||||||||++|+++|+.+++. +..
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4556778999999999999988877642 3456679999999999999999999998763 111
Q ss_pred e-echhhHH----------HhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|..+.. .....+...+|++.+.+.. ....|+||||+|.+.. ..+|.||
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALL 142 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALL 142 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHH
Confidence 1 1111111 0012234566777665542 2356999999999853 3568888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+. +...+++|.+|+.++.|.+++++ |+ .++.|..++.++..+.++..+...++.++++ .+..|++.+.| +
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d 215 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-S 215 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-h
Confidence 88874 34678999999999999999998 65 3788999999999999999998877766655 48889998887 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.++..++++.+...+ ...|+.+++.+.+
T Consensus 216 ~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 216 VRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 888888888766432 2347777765554
No 59
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3e-17 Score=188.54 Aligned_cols=174 Identities=24% Similarity=0.358 Sum_probs=134.4
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 404 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-------- 404 (817)
+|..|++++|+++.|++.--+- .|....+-++|+||||+|||+++|+||..+|..||.+|...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 6899999999999988765221 12334566999999999999999999999999999999765543
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCc----cccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 405 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR----FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 405 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~----~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.|+|....++-+.++..+..+| +++|||||.+++.-+++ +++..++|++..++.-+ ||---.-+.|+||||+
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHY--LdVp~DLSkVLFicTA 561 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHY--LDVPVDLSKVLFICTA 561 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhc--cccccchhheEEEEec
Confidence 6999999999999999999999 99999999999644443 12222333332222211 1111123679999999
Q ss_pred CCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 003473 480 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 518 (817)
Q Consensus 480 N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~ 518 (817)
|..+.|+++|+. |.. .|.++-+..++...|.+.||-
T Consensus 562 N~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 562 NVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 999999999998 764 888888999999999999874
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.5e-16 Score=182.60 Aligned_cols=207 Identities=19% Similarity=0.240 Sum_probs=151.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC------------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 392 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv------------ 392 (817)
+..++.+|+||+|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 455778999999999998888776542 346777999999999999999999998865
Q ss_pred ------------cEEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 393 ------------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 393 ------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
.++.++++. ..+...+|.+.+.+... ...||||||+|.+.. ..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a 133 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EA 133 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HH
Confidence 233333321 12345567666655432 346999999999852 23
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh
Q 003473 457 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 536 (817)
Q Consensus 457 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 536 (817)
++.|+..++.. ...+++|++|+.+..+++++++ |+ ..+.+.+++.++...+++..+...++.++++ .++.|+..
T Consensus 134 ~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~e-al~~Ia~~ 207 (472)
T PRK14962 134 FNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDRE-ALSFIAKR 207 (472)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 46777777743 3457777777778899999998 66 4899999999999999999988777777665 37888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 537 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 537 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
+.| +.+++.+.+..+...+ + ..|+.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 765 6666666666544432 2 2499999888774
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.71 E-value=3.1e-16 Score=180.90 Aligned_cols=210 Identities=23% Similarity=0.279 Sum_probs=152.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+...+.+|+||+|++++++.|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 456778899999999999999998865432 345789999999999999999999999999999999887542
Q ss_pred HhhccchHHHHHHHHHHHh------cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 405 LYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
. ..++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|++
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli 136 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILT 136 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEe
Confidence 1 223333333322 2467999999999864211 1233455555542 23346667
Q ss_pred cCCCCCCCc-ccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 003473 479 TNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 557 (817)
Q Consensus 479 TN~pd~LDp-ALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 557 (817)
||.+..+++ .|++ | ...|.|+.|+..+...+++..+...++.++++ .++.|+..+.| |++.+++.....+
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a- 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA- 207 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh-
Confidence 888888877 5554 3 45899999999999999999998888777655 47888887654 8888887766544
Q ss_pred HhCCccccHHHHHHHH
Q 003473 558 RLNKVVVEKIDFIHAV 573 (817)
Q Consensus 558 r~~~~~It~~d~~~Al 573 (817)
.+...|+.+++....
T Consensus 208 -~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 -EGYGKLTLEDVKTLG 222 (482)
T ss_pred -cCCCCCcHHHHHHhh
Confidence 345567777776544
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.70 E-value=2.6e-16 Score=189.02 Aligned_cols=221 Identities=22% Similarity=0.292 Sum_probs=157.7
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeech
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 400 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~is~s 400 (817)
.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... ++.++.++.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 577899999888877765532 234578999999999999999999864 5566666666
Q ss_pred hhH--HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 401 EFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 401 ~~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
.+. ..|.|..+.+++.+|..++...++||||||||.|...+... +.......++..++ .+..+.||+|
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d~~nlLkp~L-------~~g~i~vIgA 321 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPLL-------SSGKIRVIGS 321 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHHHHHHHHHHH-------hCCCeEEEec
Confidence 665 36788899999999999988889999999999998654311 11222222233322 2467999999
Q ss_pred cCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHhh-----cCCCCHHH
Q 003473 479 TNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTGAD 544 (817)
Q Consensus 479 TN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~-----t~G~SgaD 544 (817)
||.++ .+|++|.| ||+ .|.|+.|+.+++..||+.+..+. ++.+.++. +...+.. ...+-+..
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a-l~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA-VRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH-HHHHHHHhhccccCccChHH
Confidence 99865 57999999 997 79999999999999999876543 22222221 2222222 23345668
Q ss_pred HHHHHHHHHHHHH----HhCCccccHHHHHHHHHHHh
Q 003473 545 LANLVNEAALLAG----RLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 545 L~~Lv~eAal~A~----r~~~~~It~~d~~~Al~rvi 577 (817)
...++++|+.... ...+..|+.+|+.+.+.+..
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 8899999885442 22345688899998887754
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.69 E-value=3.7e-16 Score=178.83 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=152.4
Q ss_pred CCcccccccc-CchH--hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee
Q 003473 327 GDTITFADVA-GVDE--AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 398 (817)
Q Consensus 327 ~~~vtf~DV~-G~ee--aKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is 398 (817)
.+..||++.+ |... +...++++. .+| .....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~---~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVA---ENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHH---hCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566899954 5332 333333332 222 1233569999999999999999999987 56789999
Q ss_pred chhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 399 ASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 399 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
+.+|...+.........+-|..... .+++|+|||+|.+..+.. ...+.-.++|.+.. ....+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~~~~l~~~~n~l~~-------~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER------TQEEFFHTFNALHE-------AGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH------HHHHHHHHHHHHHH-------CCCcEEEEC
Confidence 9988776544322211222332222 467999999999854321 11122222333322 233466666
Q ss_pred cCCCCC---CCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 003473 479 TNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 553 (817)
Q Consensus 479 TN~pd~---LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 553 (817)
+..|.. ++++|.+ ||. ..+.+..|+.++|.+||+..+...++.+++++ ++.||....| +.++|..+++...
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHH
Confidence 666554 6788887 885 58999999999999999999988777777775 8889988876 8999999999988
Q ss_pred HHHHHhCCccccHHHHHHHHHHHh
Q 003473 554 LLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 554 l~A~r~~~~~It~~d~~~Al~rvi 577 (817)
..|...+ ..|+.+.+.+++....
T Consensus 328 ~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 328 AYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHhhC-CCCCHHHHHHHHHHhh
Confidence 7776555 5589999999987654
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7e-16 Score=172.01 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=151.5
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------- 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~------- 396 (817)
.+..++.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|+++.+....
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456778999999999999998876642 3456778999999999999999999998643110
Q ss_pred e-echhhHHH-----h-----hccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVEL-----Y-----VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~~-----~-----vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|.++... + .......++++.+.+... ...|++|||+|.+.. ...|.|+
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLL 140 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALL 140 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHH
Confidence 0 11111110 0 012334566766655422 235999999998842 2346777
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..++.. ...+.+|.+|+.++.+.+++++ |+ ..+.+.+|+.++..++++..+++.+..++++ .++.++..+.| +
T Consensus 141 k~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~ 213 (363)
T PRK14961 141 KTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-S 213 (363)
T ss_pred HHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 777743 3456677778888889999887 65 4789999999999999999988777666554 46778888876 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.+++.++++.+... +...|+.+++.+++
T Consensus 214 ~R~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 214 MRDALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 88888888776543 35678888877766
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.1e-16 Score=183.90 Aligned_cols=210 Identities=17% Similarity=0.238 Sum_probs=152.9
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC------------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 392 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv------------ 392 (817)
.+.++.+|+||+|++++++.|++.+.. .+.+..+||+||+|||||++|+.+|+.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456778999999999999999887753 345677899999999999999999999876
Q ss_pred cEEEee-ch--------hhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHH
Q 003473 393 PFISCS-AS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 457 (817)
Q Consensus 393 pfi~is-~s--------~~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 457 (817)
|+-.|. |. ++++. -...+...+|++.+.+.. ....|+||||+|.|.. ...
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~Aa 141 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAF 141 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHH
Confidence 221121 11 11110 011234567777776643 2356999999999853 346
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhc
Q 003473 458 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 537 (817)
Q Consensus 458 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 537 (817)
|.||..|+. ...+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+.+.++.++++ .++.|++.+
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A 215 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAA 215 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 889998884 34567888999999999999998 64 5889999999999999998887766655433 367788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 538 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 538 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
.| +.++..++++.+.... ...|+.+++.+
T Consensus 216 ~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 77 8889989888766432 23455554443
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=4.1e-16 Score=183.48 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=153.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~ 396 (817)
.++.++-+|+||+|++++++.|+..++. .+.+..+||+||+|||||++|+++|+.+++. +-.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 3556778999999999999998887642 3567778999999999999999999988752 111
Q ss_pred e-echhhHH--------H--hhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVE--------L--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~--------~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|..+.+ . ....+...++++++.+.. ....|+||||+|.|.. ...|.||
T Consensus 76 C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALL 140 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAML 140 (830)
T ss_pred cHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHH
Confidence 1 1111110 0 011234567777776643 2346999999999852 2457888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+.. ..+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+.+.++.++++ .+..|++.+.| +
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-s 213 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-S 213 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 888743 3468889999999999999988 65 5889999999999999999998877766554 47888899887 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
.++..+++.++..+. ...|+.+++..
T Consensus 214 mRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 214 MRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 888888888776443 22355554433
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.6e-16 Score=180.24 Aligned_cols=206 Identities=19% Similarity=0.237 Sum_probs=153.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 393 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp----------- 393 (817)
...++.+|+||+|++.+++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 44567899999999999999888765 24567789999999999999999999998762
Q ss_pred -------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 394 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 394 -------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
++.+++++ ..+...+|++...+.. ....|+||||+|.|.. ..
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A 134 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HS 134 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HH
Confidence 22222211 1234567777766532 2346999999998853 24
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh
Q 003473 457 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 536 (817)
Q Consensus 457 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 536 (817)
.|.|+..|+.. ...+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++....++..+.+.++.+.++ .+..|+..
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~ 208 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAES 208 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57788888743 3456777788888888888876 65 4889999999999999999998877776655 47888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 537 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 537 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.| +.+++.+++..+... +...|+.+++...+
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 876 888888888776543 34568887776643
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1e-15 Score=176.68 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=160.1
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE---------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--------- 394 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf--------- 394 (817)
....++-+|+|++|++.++..|+..+.. .+.|.++||+||||||||++|+++|+.+++.-
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 3456778999999999999988775532 45677899999999999999999999987631
Q ss_pred --EEe-echhhHHH----------hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHH
Q 003473 395 --ISC-SASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 457 (817)
Q Consensus 395 --i~i-s~s~~~~~----------~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 457 (817)
..| +|..+.+. ....+...++++++.+... ...|++|||+|.+.. ..+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~ 145 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAF 145 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHH
Confidence 111 12122110 0123456788888877543 345999999998842 346
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhc
Q 003473 458 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 537 (817)
Q Consensus 458 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 537 (817)
|.|+..|+. +...+++|.+|+.++.+.+++++ |+ ..+.+..++.++...+++..+++.++.++++ .++.|+..+
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s 219 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKS 219 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 778887773 34567888888888899999987 55 4788999999999999999998877766554 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 538 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 538 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.| +.+++.++++.++.++... ...|+.+++.+.+
T Consensus 220 ~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 76 8999999999887766422 2368888877665
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=8.1e-16 Score=174.22 Aligned_cols=203 Identities=29% Similarity=0.416 Sum_probs=147.4
Q ss_pred CCCccccccccCchHhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 326 QGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKee---L~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
..++.+|+|++|++++... |.+++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456789999999999766 6665531 223479999999999999999999999999999987532
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 403 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
+...++.+++.+.. ....||||||+|.+.... .+.|+..++. ..+++|++
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~---------------q~~LL~~le~----~~iilI~a 126 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ---------------QDALLPHVED----GTITLIGA 126 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH---------------HHHHHHHhhc----CcEEEEEe
Confidence 33456777776642 256799999999885321 2445555542 45677766
Q ss_pred c--CCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC--CC-CCcccCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 003473 479 T--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAA 553 (817)
Q Consensus 479 T--N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~--~l-~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 553 (817)
| |....+++++++ |+ ..+.+.+++.++...+++..+... ++ .++++ .++.+++.+.| ..+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 344578999998 76 588999999999999999887642 22 34433 36677887754 6777777777765
Q ss_pred HHHHHhCCccccHHHHHHHHHHH
Q 003473 554 LLAGRLNKVVVEKIDFIHAVERS 576 (817)
Q Consensus 554 l~A~r~~~~~It~~d~~~Al~rv 576 (817)
.. ...|+.+++.+++...
T Consensus 202 ~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKR 219 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhh
Confidence 43 4568999998888654
No 70
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.68 E-value=1.2e-15 Score=172.39 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=149.1
Q ss_pred Ccccccc-ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 003473 328 DTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 401 (817)
Q Consensus 328 ~~vtf~D-V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~ 401 (817)
+..||++ ++|.+.. .....+.....+| .....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4668999 5564432 1222222222222 2234569999999999999999999886 67899999998
Q ss_pred hHHHhhccchH-HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 402 FVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 402 ~~~~~vG~~~~-~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
|...+...... .+..+.+..+ .+.+|+|||+|.+..+. .....+..++..+- .+...+||+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE----------RTQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 87655432211 1222222222 35799999999986432 11122223333221 123346666665
Q ss_pred CCCC---CCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 481 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 481 ~pd~---LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
.|.. +++.+.+ ||. ..+.++.|+.++|..|++..+...++.+++++ ++.||....+ +.++|+.+++.....
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 5643 5688887 775 57999999999999999999988888777664 8888988765 899999999998877
Q ss_pred HHHhCCccccHHHHHHHHHHHh
Q 003473 556 AGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi 577 (817)
|...+ ..|+.+.+.+++....
T Consensus 318 a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 318 ASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHhC-CCCCHHHHHHHHHHhc
Confidence 76544 5689988888886643
No 71
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.68 E-value=5.9e-15 Score=163.38 Aligned_cols=223 Identities=23% Similarity=0.248 Sum_probs=153.1
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeech
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 400 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g---------vpfi~is~s 400 (817)
...++++|.++..++|...+..... ...+.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3456899999999888877654221 24456799999999999999999997652 578888875
Q ss_pred hhHH----------Hhh--cc-------c-hHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHH
Q 003473 401 EFVE----------LYV--GM-------G-ASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 459 (817)
Q Consensus 401 ~~~~----------~~v--G~-------~-~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 459 (817)
.... ... |. . ...+..+++.... ..+.||+|||+|.+.... ...+.+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~ 151 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQ 151 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHh
Confidence 4321 111 11 1 1223445554432 457799999999996221 124566
Q ss_pred HHhhccC-CCCCCcEEEEEEcCCCC---CCCcccCCCCccc-eEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHH
Q 003473 460 LLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGD 532 (817)
Q Consensus 460 LL~emdg-~~~~~~VIVIaATN~pd---~LDpALlRpGRFd-r~I~V~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~ 532 (817)
|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... ...+++++ ++.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~~ 228 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IPL 228 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HHH
Confidence 6554221 12236789999999885 57888876 664 679999999999999999988621 11233322 333
Q ss_pred H---HhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003473 533 I---ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 576 (817)
Q Consensus 533 L---A~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 576 (817)
+ +..+.| ..+.+.++|..|+..|..++...|+.+|+..|++..
T Consensus 229 i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 229 CAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3 344445 567777899999999988888999999999998775
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=8.8e-16 Score=177.84 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=154.2
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 393 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---------- 393 (817)
.+..++-+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 3456778999999999999999887753 3456679999999999999999999998763
Q ss_pred --------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHH
Q 003473 394 --------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 455 (817)
Q Consensus 394 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 455 (817)
++.++++ ...+...+|++.+.+.. ....|++|||+|.|.. .
T Consensus 76 C~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~ 134 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------H 134 (509)
T ss_pred CHHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------H
Confidence 2222221 12344567777776543 2345999999999853 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHh
Q 003473 456 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 535 (817)
Q Consensus 456 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 535 (817)
..|.||..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+.+..++.++....++..+.+.++.+.++ .+..++.
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~ 208 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLAR 208 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 357888888854 3457777788888888888887 54 4778999999999999999988877776554 4778888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 536 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 536 ~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 8866 889999999877543 34567887776654
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=2e-15 Score=157.99 Aligned_cols=212 Identities=12% Similarity=0.140 Sum_probs=139.2
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
.+..+|++.+|.+... .+..+... +. ......++||||||||||+|++|+|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~------~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKN------FI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHH------hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899999876532 11111111 11 1122358999999999999999999885 3444555543221
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.. ..++++..+ ...+|+|||+|.+... ...+..+..++..+. .....++|++++..|.
T Consensus 80 ~~--------~~~~~~~~~--~~dlLilDDi~~~~~~----------~~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENLE--QQDLVCLDDLQAVIGN----------EEWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhcc--cCCEEEEeChhhhcCC----------hHHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 11 112233322 3569999999988532 223334555555443 1223355666666676
Q ss_pred CCC---cccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC
Q 003473 484 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 484 ~LD---pALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 560 (817)
.++ ++|.++.++...+.++.|+.++|.+|++..+..+++.+++++ ++.|+.+..| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 654 889886667789999999999999999999988788887775 7888998876 88899888887654443 33
Q ss_pred CccccHHHHHHHH
Q 003473 561 KVVVEKIDFIHAV 573 (817)
Q Consensus 561 ~~~It~~d~~~Al 573 (817)
+..||...+.+++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3468888777665
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=1.3e-15 Score=174.00 Aligned_cols=224 Identities=17% Similarity=0.228 Sum_probs=151.2
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 401 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~ 401 (817)
.+..||++.+--+.-......+.....+|. ...+++||||||||||+|++|+|+++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456789998733333323333333322221 13469999999999999999999985 46788999999
Q ss_pred hHHHhhccch-HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 402 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 402 ~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
|...+..... ..+.+ |.......+.+|+|||+|.+..+.. ...+.-.+++.+.. ....+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~------~q~elf~~~n~l~~-------~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG------VQTELFHTFNELHD-------SGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH------HHHHHHHHHHHHHH-------cCCeEEEECCC
Confidence 8776543211 12222 3333334578999999998753311 11222223333322 23456666656
Q ss_pred CCCC---CCcccCCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 481 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 481 ~pd~---LDpALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
.|.. +++.+.+ || ...+.+.+||.+.|.+|++..+...++.+++++ ++.||....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567777 55 468889999999999999999988778887775 8888988876 889999999988777
Q ss_pred HHHhCCccccHHHHHHHHHHHh
Q 003473 556 AGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi 577 (817)
+...+ ..|+.+...+++...+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHh
Confidence 76555 5689988888887654
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=8.9e-15 Score=163.74 Aligned_cols=226 Identities=22% Similarity=0.239 Sum_probs=154.7
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhH
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 403 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~~~ 403 (817)
....+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34567899999988888777643211 2345679999999999999999999876 5788999885432
Q ss_pred H----------Hhhc-------cc-hHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc
Q 003473 404 E----------LYVG-------MG-ASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 464 (817)
Q Consensus 404 ~----------~~vG-------~~-~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 464 (817)
. ...+ .. ...+..+.+.... ..+.||+|||+|.+....+ .+.+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 1 1111 01 1122333333332 3568999999999972211 23566676666
Q ss_pred cCCCCCCcEEEEEEcCCCC---CCCcccCCCCcc-ceEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHHhhcC
Q 003473 465 DGFDSNSAVIVLGATNRSD---VLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 538 (817)
Q Consensus 465 dg~~~~~~VIVIaATN~pd---~LDpALlRpGRF-dr~I~V~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~ 538 (817)
+.... .++.+|+++|..+ .+++.+.+ || ...|.+++++.++..+|++.++... ...++++ .++.+++.+.
T Consensus 167 ~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 54432 4788888888763 56777765 45 3578999999999999999988642 1123333 3566777664
Q ss_pred CC--CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHh
Q 003473 539 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 539 G~--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 577 (817)
+. ..+.+.+++..|+..|..++...|+.+|+..|+++..
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 32 3466678899999999988999999999999998763
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.1e-15 Score=177.60 Aligned_cols=212 Identities=20% Similarity=0.272 Sum_probs=151.9
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~i 397 (817)
...++.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++. +-.|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 445678999999999999988877653 3456678999999999999999999998763 1111
Q ss_pred e-chhh--------HHHh--hccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 S-ASEF--------VELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 s-~s~~--------~~~~--vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
. |..+ .+.. ...+...+|++.+.+.. ....|+||||+|.|.. ...|.||.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLK 141 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLK 141 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHH
Confidence 0 1111 1000 01234557777666542 2345999999999853 35688999
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.|+. +...+++|.+|+.+..|.+.+++ |+ .++.|..++.++....|+..+...++.+.++ .+..|+..+.| +.
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAADG-SM 214 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8884 34567888888889999999988 63 6899999999999999999887766655443 47778888877 88
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
++..+++..|... +...|+.+++...+
T Consensus 215 R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 215 RDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888888776533 22346665555443
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.3e-15 Score=180.12 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=144.5
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~ 396 (817)
.++.++.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 3456778999999999999998877642 3567778999999999999999999998764 211
Q ss_pred e-echhhHHH-h-----h----ccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVEL-Y-----V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~~-~-----v----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|-.+.+. + + ..+...+|++.+.+.. ....|+||||+|.|.. ..+|.||
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALL 140 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALL 140 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHH
Confidence 1 11111110 0 0 1233456777665542 2345999999999852 4568899
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+.. ...+++|++|+.+..|.+.+++ |+ .++.|..++.++....|+..+...++.+.++ .+..|+..+.| +
T Consensus 141 KtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d 213 (944)
T PRK14949 141 KTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-S 213 (944)
T ss_pred HHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 999843 3567777788888889889887 54 5889999999999999999888766655443 47788888877 7
Q ss_pred HHHHHHHHHHHH
Q 003473 542 GADLANLVNEAA 553 (817)
Q Consensus 542 gaDL~~Lv~eAa 553 (817)
.+++.+++..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 889989988776
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.8e-15 Score=178.01 Aligned_cols=212 Identities=18% Similarity=0.248 Sum_probs=155.1
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf-------i~i 397 (817)
.+.++.+|+||+|++.+++.|+..+.. .+.+.++||+||+|||||++|+++|++++++- -.|
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456778999999999999999887653 35678899999999999999999999886531 111
Q ss_pred e-chhhHH----------HhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 S-ASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 s-~s~~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
. |..+.. .....+...++++++.+.. ....||||||+|.+.. ..+|.||.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLK 141 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLK 141 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHH
Confidence 1 111100 0112344568888876542 2346999999998742 34578888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.|+.. ...+++|.+||.+..+.+.+++ |+ ..+.|..++.++....|+..+.+.++.++++ .+..|++.+.| +.
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-sl 214 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SM 214 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CH
Confidence 88743 3456778888888888888876 65 4678889999999999999998887776554 47888888866 88
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.++++.+..+ +...|+.+++...+
T Consensus 215 RdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 215 RDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9999999887654 23457777766654
No 79
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.65 E-value=1.3e-15 Score=184.04 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=126.2
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 404 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-------- 404 (817)
+|+.|++++|+.+.+.+...... +......++|+||||||||++++++|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 45999999999998877754322 1122346999999999999999999999999999988765432
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccC-----CC--------CC
Q 003473 405 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 470 (817)
Q Consensus 405 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg-----~~--------~~ 470 (817)
.|.|....++...+..+...+| ||||||||.+....++. ..+.|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-----------~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-----------PASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-----------HHHHHHHHhccccEEEEecccccccccC
Confidence 4677777788777877776667 89999999998654321 22455555542 11 12
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 518 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~ 518 (817)
++|++|||+|.. .|+++|+. ||. .|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 679999999987 59999998 985 789999999999999999884
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.6e-15 Score=172.31 Aligned_cols=205 Identities=18% Similarity=0.215 Sum_probs=156.0
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 392 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv------------- 392 (817)
..++.+|+||+|++.+++.|+..+.. .+.|.++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 45678999999999999988876542 456788999999999999999999997643
Q ss_pred -----------cEEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHH
Q 003473 393 -----------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 457 (817)
Q Consensus 393 -----------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 457 (817)
.++.+++++ ..+...+|++.+.+... ...|++|||+|.+.. ..+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~ 133 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAF 133 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHH
Confidence 223333221 23446788888777532 345999999998842 356
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhc
Q 003473 458 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 537 (817)
Q Consensus 458 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 537 (817)
|.|+..|+... ..+++|.+|+.++.|.+.+++ |+ ..+.+..++.++....++..+.+.++.++++ .+..|++.+
T Consensus 134 NaLLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s 207 (491)
T PRK14964 134 NALLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENS 207 (491)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 88888888533 457777788888889999987 54 4789999999999999999998887777665 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 538 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 538 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.| +.+++.++++.+..++. ..|+.+++.+.+
T Consensus 208 ~G-slR~alslLdqli~y~~----~~It~e~V~~ll 238 (491)
T PRK14964 208 SG-SMRNALFLLEQAAIYSN----NKISEKSVRDLL 238 (491)
T ss_pred CC-CHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Confidence 76 88999999988876542 368888877653
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.7e-15 Score=171.54 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=151.2
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 393 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---------- 393 (817)
....++.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3556788999999999999999887753 3456678999999999999999999988541
Q ss_pred -------------EEEeechhhHHHhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 394 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 394 -------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
++.++.+ ...+...++++.+.+.. ..+.||+|||+|.+. ...
T Consensus 74 ~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a 132 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSA 132 (504)
T ss_pred hhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHH
Confidence 2222221 11234556776555543 345699999999763 234
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh
Q 003473 457 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 536 (817)
Q Consensus 457 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 536 (817)
++.|+..|+.. ...+++|.+||.+..+.+.+.+ |+ ..+.|..|+.++....++..+.+.++.++++ .++.|+..
T Consensus 133 ~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~ 206 (504)
T PRK14963 133 FNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARL 206 (504)
T ss_pred HHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 67888888753 2456777788888999999987 54 3789999999999999999998877776554 47788888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 537 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 537 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.| +.+++.++++.+... ...|+.+++.+.+
T Consensus 207 s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 207 ADG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred cCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 876 667777777765432 2368888777664
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=6.8e-15 Score=160.68 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=139.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeec
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 399 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g-----vpfi~is~ 399 (817)
+...+.+|++++|++++++.|...+.. ....++||+||||||||++|+++|+++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 455677899999999999998886642 1123699999999999999999999873 45788888
Q ss_pred hhhHHHh-------------hcc-------chHHHHHHHHHHHhc-----CCeEEEEccccchhhccCCccccccchHHH
Q 003473 400 SEFVELY-------------VGM-------GASRVRDLFARAKKE-----APSIIFIDEIDAVAKSRDGRFRIVSNDERE 454 (817)
Q Consensus 400 s~~~~~~-------------vG~-------~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 454 (817)
+++.... .+. ....++.+.+..... .+.+|+|||+|.+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------~- 141 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------A- 141 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------H-
Confidence 8764321 011 122333333333222 2459999999987421 1
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHH
Q 003473 455 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 534 (817)
Q Consensus 455 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 534 (817)
.+.|...++..... ..+|.+|+.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+.+.++.++++ .++.++
T Consensus 142 --~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~ 213 (337)
T PRK12402 142 --QQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIA 213 (337)
T ss_pred --HHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 22344444433332 3344566666677778876 54 4789999999999999999998877776555 477788
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 535 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 535 ~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
..+.| + ++.+++.....+. +...|+.+++.+++.
T Consensus 214 ~~~~g-d---lr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 214 YYAGG-D---LRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHcCC-C---HHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 87744 4 4444444443332 223689988877653
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=2.6e-15 Score=183.25 Aligned_cols=218 Identities=21% Similarity=0.285 Sum_probs=152.0
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 397 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~i 397 (817)
.+-++++++|+++... .++..|.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4567999999998644 44443332 233478999999999999999999875 3457788
Q ss_pred echhhHH--HhhccchHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEE
Q 003473 398 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 474 (817)
Q Consensus 398 s~s~~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 474 (817)
+.+.+.. .|.|..+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+..+. ++.+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 8877663 5888999999999999875 468899999999998654321 1112 1233443333 56799
Q ss_pred EEEEcCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHhhcCCCC----
Q 003473 475 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT---- 541 (817)
Q Consensus 475 VIaATN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S---- 541 (817)
+|+||+..+ .+|+||.| ||. .|.|+.|+.+++..||+.+... .++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 999998643 48999999 996 8999999999999997665543 22334433 4667777776653
Q ss_pred -HHHHHHHHHHHHHHHHHh-CCccccHHHHHHH
Q 003473 542 -GADLANLVNEAALLAGRL-NKVVVEKIDFIHA 572 (817)
Q Consensus 542 -gaDL~~Lv~eAal~A~r~-~~~~It~~d~~~A 572 (817)
+.....++++|+.....+ ....+..+++.+.
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 455678888887655432 3333444444433
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=5.9e-15 Score=172.93 Aligned_cols=212 Identities=20% Similarity=0.257 Sum_probs=154.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~i 397 (817)
...++.+|+||+|++++++.|+..+.. .+.++.+||+||+|||||++|+.+|+.++++ +-.|
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 445678999999999999998887653 3456779999999999999999999987542 1111
Q ss_pred e-chhhHH----------HhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 S-ASEFVE----------LYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 s-~s~~~~----------~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
. |..+.+ ...+.+...+|++.+.+... ...|++|||+|.|.. ..+|.|+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLK 141 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLK 141 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHH
Confidence 1 111110 00123456788888877532 245999999998842 34678888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.++. +...+++|.+|+.++.|.+.+++ |+. .+.|.+|+.++....++..+.+.++.++++ .+..++..+.| +.
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s~G-~~ 214 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAAEG-GM 214 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8874 34567777788889999999987 654 688999999999999999998877776654 47778888876 88
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.+++..+...+ ...|+.+++...+
T Consensus 215 R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 215 RDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 88888888776543 3457777666543
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5e-15 Score=174.07 Aligned_cols=212 Identities=16% Similarity=0.234 Sum_probs=153.2
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 393 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp----------- 393 (817)
...++.+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 445678999999999999988887653 3456678999999999999999999998752
Q ss_pred -EEEe-echhh--------HHH--hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHH
Q 003473 394 -FISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 457 (817)
Q Consensus 394 -fi~i-s~s~~--------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 457 (817)
+-.| +|..+ .+. ....+...+|++.+.+... .-.|++|||+|.|.. ...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~ 141 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAF 141 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHH
Confidence 1111 11111 111 0112345678887766432 235999999999853 236
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhc
Q 003473 458 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 537 (817)
Q Consensus 458 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 537 (817)
|.||..|+. ....+++|.+|+.+..+.+.+++ |+ .++.+..++.++....|+..+.+.++.++++ .+..|+..+
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s 215 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAA 215 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 788888874 33567777788888888888887 54 5889999999999999999998877776554 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 538 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 538 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.| +.+++.++++.+.... ...|+.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 76 8888888887766542 3457777666554
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.64 E-value=3.8e-15 Score=153.78 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=138.5
Q ss_pred CccccccccC--chHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003473 328 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 402 (817)
Q Consensus 328 ~~vtf~DV~G--~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~ 402 (817)
...+|++.+. .+.+.+.+++++. ...+.+++|+||||||||++|++++.++ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467888873 4456666665432 2346689999999999999999999876 578999999887
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
.... .+++.... .+.+|+|||+|.+.... +....+..++..+.. ....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~---~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVRE---AGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHH---cCCeEEEECCCCh
Confidence 6432 23333322 24599999999875321 112233444443321 1223444444344
Q ss_pred CCCC---cccCCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 003473 483 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 557 (817)
Q Consensus 483 d~LD---pALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 557 (817)
..++ +.|.+ || ..+|.+++|+.+++..+++.++.+.++++++++ +..|+... +-+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~-~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHG-SRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 3332 66666 55 578999999999999999998877777776654 67788864 4599999999999887665
Q ss_pred HhCCccccHHHHHHHH
Q 003473 558 RLNKVVVEKIDFIHAV 573 (817)
Q Consensus 558 r~~~~~It~~d~~~Al 573 (817)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 568877766654
No 87
>PLN03025 replication factor C subunit; Provisional
Probab=99.64 E-value=3.7e-15 Score=163.29 Aligned_cols=203 Identities=21% Similarity=0.220 Sum_probs=138.8
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----cEEEeec
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSA 399 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-----pfi~is~ 399 (817)
+..++.+|+|++|++++++.|+.++.. .+.| ++||+||||||||++|+++|+++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456788999999999999988876542 1233 5999999999999999999999732 3556666
Q ss_pred hhhHHHhhccchHHHHHHHHHHHh-------cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003473 400 SEFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 472 (817)
Q Consensus 400 s~~~~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 472 (817)
++.. +...+++..+.... ..+.||+|||+|.+.... .+.|+..|+.+.. .
T Consensus 73 sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~--~ 129 (319)
T PLN03025 73 SDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSN--T 129 (319)
T ss_pred cccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccC--C
Confidence 5432 12234444332211 235699999999986432 2445555554333 3
Q ss_pred EEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHH
Q 003473 473 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 552 (817)
Q Consensus 473 VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 552 (817)
..+|.+||.++.+.++|++ |. ..+.++.|+.++....++..+++.++.++++ .++.++..+.| +.+.+.+.++
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq-- 202 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQ-- 202 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHH--
Confidence 4566688888888899987 54 4789999999999999999998888877765 47778877665 4444444444
Q ss_pred HHHHHHhCCccccHHHHHHH
Q 003473 553 ALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 553 al~A~r~~~~~It~~d~~~A 572 (817)
..+ .+...|+.+++...
T Consensus 203 -~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 203 -ATH--SGFGFVNQENVFKV 219 (319)
T ss_pred -HHH--hcCCCCCHHHHHHH
Confidence 222 13346777776543
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.63 E-value=5.2e-15 Score=177.18 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=146.5
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
..+..++.+|+|++|++++..+...+...+.. ....++|||||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 34555678999999999988643332222221 123469999999999999999999999999998887531
Q ss_pred HHHhhccchHHHHHHHHHHHh-----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003473 403 VELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 477 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 477 (817)
+...+++.++.+.. ....||||||||.+.... .+.|+..++ +..+++|+
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI~ 142 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLIG 142 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEEE
Confidence 12334445544421 245699999999985322 134555554 24577777
Q ss_pred EcC--CCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh-------cCCCCCcccCCHHHHHhhcCCCCHHHHHHH
Q 003473 478 ATN--RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANL 548 (817)
Q Consensus 478 ATN--~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 548 (817)
+|+ ....+++++++ |. ..+.+++++.+++..+++..+. ..++.++++ .++.|+..+.| +.+++.++
T Consensus 143 aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~ 217 (725)
T PRK13341 143 ATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNA 217 (725)
T ss_pred ecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHH
Confidence 663 33568899988 43 4789999999999999999887 334455554 37788888865 78888888
Q ss_pred HHHHHHHHHHhC--CccccHHHHHHHHHHH
Q 003473 549 VNEAALLAGRLN--KVVVEKIDFIHAVERS 576 (817)
Q Consensus 549 v~eAal~A~r~~--~~~It~~d~~~Al~rv 576 (817)
++.++..+...+ ...|+.+++.+++.+.
T Consensus 218 Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 218 LELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 888775442222 2347778888777653
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=7.8e-15 Score=161.66 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=151.4
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 393 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp----------- 393 (817)
+..++.+|+|++|++++++.|.+.+.. .+.|..+|||||||+|||++|+++|+.+.++
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 455778999999999999998886642 3456789999999999999999999987543
Q ss_pred -------------EEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 394 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 394 -------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
++.+++. ...+...++++++.+... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~ 133 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SA 133 (355)
T ss_pred HHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HH
Confidence 1222211 012344577788776542 235999999998742 24
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh
Q 003473 457 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 536 (817)
Q Consensus 457 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 536 (817)
.+.|+..++.. ...+++|.+||.++.+.+++++ |+ ..+.+++|+.++..++++.++++.++.++++ .+..++..
T Consensus 134 ~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~ 207 (355)
T TIGR02397 134 FNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARA 207 (355)
T ss_pred HHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57778887743 3456777788888888889887 66 4789999999999999999998877766654 36677777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 537 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 537 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
+.| +.+.+.+.++.+...+ ...|+.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 765 7777777777766553 23489988887663
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=1.2e-14 Score=158.02 Aligned_cols=207 Identities=19% Similarity=0.267 Sum_probs=135.6
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
.+..++.+|+|++|++++++.+...+. ..+.|..+||+||||+|||++|++++++.+.+++.+++++ .
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~ 79 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C 79 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c
Confidence 466778899999999999998888764 1345667778999999999999999999999999998876 1
Q ss_pred HHhhccchHHHHHHHHHHH-hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 404 ELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
. .......+.+...... ...++||+|||+|.+... +....+..+ ++... .++.+|++||.+
T Consensus 80 ~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~~~---le~~~--~~~~~Ilt~n~~ 141 (316)
T PHA02544 80 R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLRSF---MEAYS--KNCSFIITANNK 141 (316)
T ss_pred c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHHHH---HHhcC--CCceEEEEcCCh
Confidence 1 1111111222111111 134789999999987321 122333333 44332 456778899999
Q ss_pred CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh-------cCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 483 d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
+.+++++++ ||. .+.++.|+.+++.++++.++. +.+.++.++ .+..++....| |++.+++.....
T Consensus 142 ~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~ 213 (316)
T PHA02544 142 NGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRY 213 (316)
T ss_pred hhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHH
Confidence 999999998 774 788999999999877665432 234555443 25666665543 555555554444
Q ss_pred HHHhCCccccHHHHHH
Q 003473 556 AGRLNKVVVEKIDFIH 571 (817)
Q Consensus 556 A~r~~~~~It~~d~~~ 571 (817)
+. ...++..++..
T Consensus 214 ~~---~~~i~~~~l~~ 226 (316)
T PHA02544 214 AS---TGKIDAGILSE 226 (316)
T ss_pred Hc---cCCCCHHHHHH
Confidence 32 23466555443
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=1.1e-14 Score=157.34 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=145.6
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeech
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSAS 400 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---fi~is~s 400 (817)
.+.-++-+++|.+|++++..+ ..++..+-. ..+.| .++||||||||||+||+.|+....-+ |+.+++.
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ie-------q~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIE-------QNRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHH-------cCCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 445567789999999988765 333322111 12334 49999999999999999999988776 7777763
Q ss_pred hhHHHhhccchHHHHHHHHHHHh-----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEE
Q 003473 401 EFVELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 475 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIV 475 (817)
......+|++|++++. ....|||||||+.+.+.+|+. ||-.++ ++.|++
T Consensus 200 -------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~---------------fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 200 -------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDT---------------FLPHVE----NGDITL 253 (554)
T ss_pred -------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhc---------------ccceec----cCceEE
Confidence 3455789999999975 346799999999998766532 233332 467889
Q ss_pred EEEc--CCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh---c---CCCCCcc------cCCHHHHHhhcCCCC
Q 003473 476 LGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---K---KELPLAK------DIDLGDIASMTTGFT 541 (817)
Q Consensus 476 IaAT--N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~---~---~~l~l~~------dvdl~~LA~~t~G~S 541 (817)
|+|| |..-.|..+|++++| ++.+.....+....||.+.+. + ...+++. +--++.++..+.|-.
T Consensus 254 IGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9888 666789999998544 788899999999999988554 1 1112222 112567788888855
Q ss_pred HHHHHHHHHHH-HHHHHHhC---CccccHHHHHHHHHHH
Q 003473 542 GADLANLVNEA-ALLAGRLN---KVVVEKIDFIHAVERS 576 (817)
Q Consensus 542 gaDL~~Lv~eA-al~A~r~~---~~~It~~d~~~Al~rv 576 (817)
.+.|.. ++.+ .+...|.+ +..++.+|+.+++.+.
T Consensus 331 R~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 331 RAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 444433 3333 23333333 4578888888888654
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.1e-15 Score=170.28 Aligned_cols=212 Identities=18% Similarity=0.246 Sum_probs=151.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~i 397 (817)
...++.+|+||+|++++++.|...+.. .+.+..+||+||||+|||++|+++|+.+++. +-.|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345667999999999999988887653 3456678999999999999999999998663 2111
Q ss_pred e-chhhH-----H---H--hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 S-ASEFV-----E---L--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 s-~s~~~-----~---~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
+ |..+. + . -...+...+|++.+.+... ...|++|||+|.+.. ...|.||.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK 141 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLK 141 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHH
Confidence 1 10000 0 0 0012345678887776432 245999999998852 34578888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..++.++....++..+.+.++.++++ .+..++..+.| +.
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-sl 214 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SM 214 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8885 33567777788888888888876 54 5889999999999999998888777665443 46778888765 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.++++.+... +...|+.+++...+
T Consensus 215 r~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 215 RDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888888877654 34567777766654
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.61 E-value=1.8e-14 Score=149.89 Aligned_cols=203 Identities=17% Similarity=0.177 Sum_probs=137.2
Q ss_pred CCccccccccC--chHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 003473 327 GDTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 401 (817)
Q Consensus 327 ~~~vtf~DV~G--~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~ 401 (817)
.++.+|+++++ .+.+...++++.. +...+.+++|+||||||||+||+++++++ +.+++.+++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34578999773 3455555554332 22345679999999999999999999875 67888888877
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
+.+.. . ......+|+|||+|.+... ....+..++..+. .+...++|.+++.
T Consensus 81 ~~~~~------------~--~~~~~~~liiDdi~~l~~~------------~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 81 PLLAF------------D--FDPEAELYAVDDVERLDDA------------QQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred hHHHH------------h--hcccCCEEEEeChhhcCch------------HHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 64321 1 1223569999999987421 1223334444332 2333334444443
Q ss_pred -CC--CCCcccCCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 482 -SD--VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 482 -pd--~LDpALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
|. .+.+.|.+ || ...+.+++|+.+++..+++.++.+.++.+++++ ++.|+...+| +.+++.++++.-...|
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 31 34566665 55 579999999999999999988877778777664 7888886555 8999999999866656
Q ss_pred HHhCCccccHHHHHHHHH
Q 003473 557 GRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 557 ~r~~~~~It~~d~~~Al~ 574 (817)
... +..|+...+.+++.
T Consensus 208 ~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHh-CCCCCHHHHHHHHh
Confidence 444 46888887777663
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=1.7e-14 Score=168.27 Aligned_cols=221 Identities=21% Similarity=0.252 Sum_probs=150.4
Q ss_pred CCccccccccCchHh---HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee
Q 003473 327 GDTITFADVAGVDEA---KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS 398 (817)
Q Consensus 327 ~~~vtf~DV~G~eea---KeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is 398 (817)
.+..||++.+.-+.- ...+..+++ ++ ....+.++|||++|||||+|++|+++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~-------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---AP-------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Cc-------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 356789998743332 223333332 21 1122349999999999999999999976 57889999
Q ss_pred chhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 399 ASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 399 ~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
+.+|.+.+.........+.|.+-. ..+++|+||||+.+..+. .....+..+++.+. .+.+-+|| |
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke----------~tqeeLF~l~N~l~---e~gk~III-T 416 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE----------STQEEFFHTFNTLH---NANKQIVL-S 416 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH----------HHHHHHHHHHHHHH---hcCCCEEE-e
Confidence 999987765443322223344332 346799999999986432 11222333333332 12233444 5
Q ss_pred cCC-C---CCCCcccCCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHH
Q 003473 479 TNR-S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 552 (817)
Q Consensus 479 TN~-p---d~LDpALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 552 (817)
+|. | ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+....+ +.++|+.+++..
T Consensus 417 Sd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 417 SDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHH
Confidence 554 3 357888988 66 567789999999999999999998888888775 7888888765 789999999988
Q ss_pred HHHHHHhCCccccHHHHHHHHHHHh
Q 003473 553 ALLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 553 al~A~r~~~~~It~~d~~~Al~rvi 577 (817)
...|...+ ..|+.+.+.++++..+
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 77775544 5688888888876544
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.9e-14 Score=167.22 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=148.8
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~i 397 (817)
+..++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+ |+-.|
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 455678999999999999988876642 345677999999999999999999998764 21111
Q ss_pred e-ch--------hhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 S-AS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 s-~s--------~~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
. |. ++.+. ....+...++++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK 141 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLK 141 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHH
Confidence 1 10 00000 011233456666666543 2345999999998853 24578888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.|+.. ...+++|++|+.+..+.+.+++ |. ..+.+..++.++....++..+.+.++.+.++ .+..++..+.| +.
T Consensus 142 ~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~G-dl 214 (546)
T PRK14957 142 TLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAKG-SL 214 (546)
T ss_pred HHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3456677777778888888877 54 5899999999999999999888777665544 46778888865 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.++++.++.... ..|+.+++.+++
T Consensus 215 R~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 215 RDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 888888887765432 457777777654
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=1.8e-14 Score=164.49 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=148.6
Q ss_pred CCcccccccc-CchHh--HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 327 GDTITFADVA-GVDEA--KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 327 ~~~vtf~DV~-G~eea--KeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
.+..||++.+ |.... ...++++.. ++. .......++++||||||+|||+|++|+++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---ccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4567899987 53322 223333322 110 0111233579999999999999999999875 6889999998
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
+|...+.......-.+.|..... .+++|+|||++.+..+.. ..++.-.++|.+.. ....+|+++++
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCC
Confidence 88765443221111223444333 456999999999864321 22333444454442 12345555555
Q ss_pred CCC---CCCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHH-
Q 003473 481 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL- 554 (817)
Q Consensus 481 ~pd---~LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal- 554 (817)
.|. .++++|.+ ||. ..+.+.+|+.++|..||+..+...++.+++++ ++.|+....+ +.++|.+.++..+.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 553 56788888 885 78899999999999999999988877777664 6778887765 78888888888753
Q ss_pred --HHHHhCCccccHHHHHHHHHHHh
Q 003473 555 --LAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 555 --~A~r~~~~~It~~d~~~Al~rvi 577 (817)
.+.. ....|+.+++.+++...+
T Consensus 321 ~a~~~~-~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 321 VAYKKL-SHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHh-hCCCCCHHHHHHHHHHhh
Confidence 2222 235689999999887654
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.4e-14 Score=169.57 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=148.8
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc----------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 393 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---------- 393 (817)
.+..++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 4556788999999999999998887743 2446679999999999999999999998763
Q ss_pred --------------EEEeechhhHHHhhccchHHHHHHHHHHH----hcCCeEEEEccccchhhccCCccccccchHHHH
Q 003473 394 --------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 455 (817)
Q Consensus 394 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 455 (817)
++.+++.. ..+...++.+.+.+. .....||||||+|.+.. .
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~ 134 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------E 134 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------H
Confidence 22222110 112344555443332 22346999999999852 2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHh
Q 003473 456 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 535 (817)
Q Consensus 456 ~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~ 535 (817)
..|.|+..|+.. ...+++|++||.++.+.+.+++ |+ .++.|..++.++...+|+..+.+.++.++++ .++.|+.
T Consensus 135 a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~ 208 (624)
T PRK14959 135 AFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIAR 208 (624)
T ss_pred HHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 357788888743 3467888888888888888887 65 3789999999999999999888777666555 4777888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 536 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 536 ~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.+.| +.+++.++++.++ + .+...|+.+++..++
T Consensus 209 ~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 7765 6677777776543 2 244578888877665
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.60 E-value=4.7e-14 Score=148.36 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=135.8
Q ss_pred Ccccccccc-C-chHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003473 328 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 402 (817)
Q Consensus 328 ~~vtf~DV~-G-~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~ 402 (817)
+..+|++.+ | ...+...++.+.. . ..+..++||||||||||+|++++++++ +..+.+++..++
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788887 4 3445554444332 1 123479999999999999999999875 344555655543
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc-EEEEEEcCC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 481 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~-VIVIaATN~ 481 (817)
... ..++++.... ..+|+|||+|.+..+ ...+..+..++..+- .+.+ .+++++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~----------~~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD----------ELWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCC----------HHHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222221 248999999988532 223334444444432 1222 355555566
Q ss_pred CCC---CCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 482 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 482 pd~---LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
|.. +.|+|++ |+. ..+.+.+|+.+++.++++.++..+++.+++++ ++.|+....| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5789988 764 78999999999999999998887788887775 8889998886 8899999998864344
Q ss_pred HHhCCccccHHHHHHHH
Q 003473 557 GRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 557 ~r~~~~~It~~d~~~Al 573 (817)
.. .+..||...+.+++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34558887777665
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2e-14 Score=174.13 Aligned_cols=209 Identities=22% Similarity=0.208 Sum_probs=148.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~i 397 (817)
.+++..+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.++|. +-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456778999999999999998887652 3566679999999999999999999998762 2111
Q ss_pred echhhHHHhhc---------------cchHHHHHHHHHHH----hcCCeEEEEccccchhhccCCccccccchHHHHHHH
Q 003473 398 SASEFVELYVG---------------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 458 (817)
Q Consensus 398 s~s~~~~~~vG---------------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 458 (817)
..+..+..| .+...+|++.+.+. .....|+||||+|.|.. ...|
T Consensus 76 --~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~N 138 (824)
T PRK07764 76 --DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFN 138 (824)
T ss_pred --HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHH
Confidence 111111111 12345666554443 23456999999999853 3457
Q ss_pred HHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcC
Q 003473 459 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 538 (817)
Q Consensus 459 ~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 538 (817)
.||..|+... ..++||++|+.++.|.+.|++ |. .++.|..++.++...+|+..+++.++.++++ .+..|++.+.
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sg 212 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGG 212 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 8888888533 467777788888889888887 53 4889999999999999999998877765544 3667777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 539 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 539 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
| +.+++.++++..+..+ +...|+.+++..
T Consensus 213 G-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 213 G-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred C-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 6 7788888887765332 234566665544
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.3e-14 Score=167.90 Aligned_cols=214 Identities=20% Similarity=0.208 Sum_probs=152.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~ 396 (817)
+...++-+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++. +-.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 3456778999999999999998887642 3567778999999999999999999988752 211
Q ss_pred e-echhhHH----------H--hhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHH
Q 003473 397 C-SASEFVE----------L--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 459 (817)
Q Consensus 397 i-s~s~~~~----------~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 459 (817)
| +|-.+.. . -...+...+|++.+.+.. ....|++|||+|.+.. ...|.
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NA 137 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNA 137 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHH
Confidence 1 1111110 0 001134556666655532 2235999999999853 25678
Q ss_pred HHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCC
Q 003473 460 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 539 (817)
Q Consensus 460 LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 539 (817)
||..|+. ....+++|.+|+.++.|.+.+++ | ..++.|..++.++..+.++..+.+.++.++++ .+..++..+.|
T Consensus 138 LLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G 211 (584)
T PRK14952 138 LLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG 211 (584)
T ss_pred HHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 8888884 33567888888888999999987 5 35899999999999999999998877766544 36667776655
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 540 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 540 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.+++.++++..+..+ +...|+.+++...+
T Consensus 212 -dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 212 -SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred -CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 7888888888776443 24457776666553
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.2e-14 Score=159.74 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=148.1
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh-
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF- 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~- 402 (817)
.+..++.+|+||+|++.+++.+...+.. .+.|.++|||||||+|||++|+++|+.+.++.....+..+
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3556788999999999999888776642 3467789999999999999999999987653211111000
Q ss_pred -----HHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003473 403 -----VELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 473 (817)
Q Consensus 403 -----~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 473 (817)
.+.....+...++++++.+... .+.||+|||+|.+.. ..++.|+..++.. ....
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~ 139 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHA 139 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCce
Confidence 0011112345677888776532 346999999997742 2356677767642 2345
Q ss_pred EEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 003473 474 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 553 (817)
Q Consensus 474 IVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 553 (817)
++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++.++++ .++.++..+.| +.+.+.+.++...
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 666667777888899887 54 3689999999999999999888877777665 47778887765 6677777776665
Q ss_pred HHHHHhCCccccHHHHHHHH
Q 003473 554 LLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 554 l~A~r~~~~~It~~d~~~Al 573 (817)
.++ +.. |+.+++...+
T Consensus 215 ~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENL 230 (367)
T ss_pred Hhc---CCC-CCHHHHHHHh
Confidence 554 223 7877776655
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.59 E-value=4.8e-14 Score=166.72 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=142.8
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhc-------C---CcEEEeechh
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA-------E---VPFISCSASE 401 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~e~-------g---vpfi~is~s~ 401 (817)
+.|.|.++..++|..++..... + ..|.+ ++|+|+||||||++++.+..++ + +.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5677888777777766654211 2 23444 5699999999999999998765 2 5678999854
Q ss_pred hHHH-------h--h-------c-cchHHHHHHHHHHH--hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 402 FVEL-------Y--V-------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 402 ~~~~-------~--v-------G-~~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
+... + + | .....+..+|.... ....+||+|||||.|.... ..+|..|+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH
Confidence 3321 1 0 1 11234566666552 2345799999999997431 245666666
Q ss_pred hccCCCCCCcEEEEEEcCC---CCCCCcccCCCCccce-EEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcC
Q 003473 463 EMDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 538 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~---pd~LDpALlRpGRFdr-~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 538 (817)
... .....++|||++|. ++.|+|.+.+ ||.. .|.|++++.+++.+||+..+......+++++ ++.+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA-IELIArkVA 969 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA-IQLCARKVA 969 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhhh
Confidence 433 23467999999986 5677888887 4432 4788999999999999999875322244443 666676443
Q ss_pred CC--CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHhc
Q 003473 539 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 539 G~--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 578 (817)
.. ..+....+|+.|+.. ++...|+.+|+.+|+.+...
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 22 334444556666554 34568999999999977643
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.2e-14 Score=168.76 Aligned_cols=213 Identities=21% Similarity=0.279 Sum_probs=155.2
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE---eech
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS---CSAS 400 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~---is~s 400 (817)
+...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|..+.++-.. -.|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 4556788999999999999998887753 3567779999999999999999999988764210 1122
Q ss_pred hhHHH-------hh-----ccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc
Q 003473 401 EFVEL-------YV-----GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 464 (817)
Q Consensus 401 ~~~~~-------~v-----G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 464 (817)
.+... +. ..+...+|++.+.+... ...|++|||+|.+.. ...+.||..|
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtL 142 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTL 142 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHh
Confidence 22110 00 12345688888777643 346999999998852 2468888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHH
Q 003473 465 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 544 (817)
Q Consensus 465 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaD 544 (817)
+. +...+++|.+|+.++.|.+.+++ |+. ++.|.+|+.++....|+..+.+.++.+.++ .+..++..+.| +.++
T Consensus 143 EE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~ 215 (725)
T PRK07133 143 EE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRD 215 (725)
T ss_pred hc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 34567888888889999999988 653 889999999999999998888777655544 36778888776 7788
Q ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 545 LANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 545 L~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.++++.++... ...|+.+++.+.+
T Consensus 216 AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 888887765443 2338887776654
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2e-14 Score=169.19 Aligned_cols=211 Identities=19% Similarity=0.256 Sum_probs=152.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~i 397 (817)
...++.+|+||+|++++++.|...+.. .+.|..+|||||+|+|||++|+++|+.++++ +-.|
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 455678999999999999999887642 3567789999999999999999999998653 1111
Q ss_pred -echh--------hHHH--hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 -SASE--------FVEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 -s~s~--------~~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
+|.+ +.+. ....+...++++.+.+... ...|++|||+|.+.. ...|.|+.
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk 141 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLK 141 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHH
Confidence 1111 1100 0112345678877766532 234999999998853 24588888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.|+. +...+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....++..+.+.++.++++ .+..++..+.| +.
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a~G-~l 214 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKGDG-SM 214 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CH
Confidence 8884 34567888888889999999987 54 3788999999999999998888877776655 47788888876 77
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~A 572 (817)
+++.++++.+..+.. ..|+.+|+...
T Consensus 215 r~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 215 RDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 888888876665542 34777776654
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=2e-14 Score=175.88 Aligned_cols=166 Identities=26% Similarity=0.372 Sum_probs=126.7
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 397 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~i 397 (817)
.+-++++|+|.++..+.+.++ |.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~i---L~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQV---LQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHH---Hhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 445789999999864444443 332 233569999999999999999999987 7889999
Q ss_pred echhhHH--HhhccchHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEE
Q 003473 398 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 474 (817)
Q Consensus 398 s~s~~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 474 (817)
+.+.+.. +|.|..+.+++.+|+.+.. ..|+||||||+|.+.+...+. +..+. -|.|...+ .++.+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~----~~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDA----GNMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhH----HHHhcchh----hcCCCe
Confidence 8888763 5889999999999998644 568999999999998654321 12121 12222222 357799
Q ss_pred EEEEcCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 003473 475 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 519 (817)
Q Consensus 475 VIaATN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~ 519 (817)
+||||+..+ .+|+|+.| ||+ .|.+..|+.+++..||+.+..+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 998 6889999999999999877644
No 106
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=6.7e-14 Score=162.11 Aligned_cols=212 Identities=21% Similarity=0.260 Sum_probs=151.4
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~ 396 (817)
.+..++.+|+||+|++.+++.|+..+.. .+.|..+|||||||+|||++|+++|+.+.+ |+..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456778999999999999999887642 356777899999999999999999998743 1111
Q ss_pred e-echhhHHH-----hh-----ccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVEL-----YV-----GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~~-----~v-----G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|..+.+. +. ..+...++++.+.+... ...|++|||+|.+.. ...|.||
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALL 138 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALL 138 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHH
Confidence 1 11111000 00 11235677777654322 124999999998852 3457888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+... ..+.+|.+|+.+..|.+++++ |. .++.|.+++.++....++..+.+.++.+.++ .+..|+..+.| +
T Consensus 139 K~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s~G-d 211 (535)
T PRK08451 139 KTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSGNG-S 211 (535)
T ss_pred HHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 8888543 456677777888999999988 63 5889999999999999999998887776654 57788888776 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 572 (817)
.+++.+++..+...+ ...|+.+++.+.
T Consensus 212 lR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 212 LRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 888888888877665 234666665544
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=2.2e-14 Score=175.26 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=147.2
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEee
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 398 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~is 398 (817)
.-.+++|+|.++..+.+.+++. .+.+++++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3468899999999888777652 3455689999999999999999999976 47899999
Q ss_pred chhhHH--HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEE
Q 003473 399 ASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 476 (817)
Q Consensus 399 ~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVI 476 (817)
.+.+.. .|.|+.+.+++.+|+.++...++||||||||.+.+..+.. +.. ..-|-|...+. +..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~----~~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAI----DAANILKPALA----RGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Ccc----cHHHHhHHHHh----CCCcEEE
Confidence 988873 6888899999999999988889999999999998654321 111 11222333332 4668999
Q ss_pred EEcCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc----CCCCCcccCCHHHHHhhcCCCC-----H
Q 003473 477 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 542 (817)
Q Consensus 477 aATN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S-----g 542 (817)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.++++ .+..++..+.+|. +
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCccccCc
Confidence 9998764 47999999 997 5799999999999998765432 23334444 3566666666553 3
Q ss_pred HHHHHHHHHHHHHH
Q 003473 543 ADLANLVNEAALLA 556 (817)
Q Consensus 543 aDL~~Lv~eAal~A 556 (817)
...-.++++|+...
T Consensus 388 dkaidlld~a~a~~ 401 (821)
T CHL00095 388 DKAIDLLDEAGSRV 401 (821)
T ss_pred hHHHHHHHHHHHHH
Confidence 44556777766544
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=6.7e-14 Score=164.67 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=155.8
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------ 397 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~i------ 397 (817)
..+.++.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+++.....
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 4556778999999999999998886642 45678899999999999999999999987642111
Q ss_pred -------echhhHH--------Hh--hccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 398 -------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 398 -------s~s~~~~--------~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
+|..+.+ .. ...+...+|++++.++.. ...|++|||+|.+.. ..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a 148 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AA 148 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HH
Confidence 1111111 00 012345788888777543 246999999998842 24
Q ss_pred HHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhh
Q 003473 457 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 536 (817)
Q Consensus 457 Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 536 (817)
.|.||..|+... ..+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..+.+.++.++++ .++.|+..
T Consensus 149 ~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~ 222 (598)
T PRK09111 149 FNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARA 222 (598)
T ss_pred HHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 678888887433 456676777878888888887 54 4789999999999999999998877776654 47777888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 537 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 537 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.| +.+++.++++.+.... ...|+.+++.+.+
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 866 8888888888766442 3458888887665
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.3e-14 Score=165.79 Aligned_cols=212 Identities=18% Similarity=0.262 Sum_probs=150.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFIS 396 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~ 396 (817)
.+..++.+|+|++|++.+++.|...+.. .+.|+++||+||||+|||++|+++|..+.+ |+-.
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4556778999999999999988876532 356778999999999999999999998754 1111
Q ss_pred ee-ch--------hhHHH--hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 CS-AS--------EFVEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 is-~s--------~~~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
|. |. ++.+. ....+...+|++.+.+... ...|++|||+|.+.. ...+.|+
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLL 140 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALL 140 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHH
Confidence 11 00 00000 0012345677777766542 235999999998842 2347788
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+. +...+++|.+|+.++.|.+++++ |+. .+.+.+|+.++....++..+.+.+..++++ .+..++..+.| +
T Consensus 141 KtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~lS~G-d 213 (605)
T PRK05896 141 KTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIADLADG-S 213 (605)
T ss_pred HHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 88874 33467888888889999999987 654 789999999999999999888777666655 37778888766 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 572 (817)
.+++.++++.+...+ +. .|+.+++.+.
T Consensus 214 lR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 214 LRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 788888887755443 22 2777776664
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.7e-14 Score=160.96 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=149.2
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~i 397 (817)
...++.+|+|++|++.+++.|+..+.. .+.+..+|||||||+|||++|+.+|..+++ |+-.|
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 345677999999999999988877643 345667899999999999999999998764 22111
Q ss_pred -echhhHH-----Hh-----hccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 -SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 -s~s~~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
+|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+.. ...|.|+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk 141 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLK 141 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHH
Confidence 1111111 00 11234456676665543 2346999999998752 23577777
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.+++..++.++++ .+..++..+.| +.
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~l 214 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GM 214 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 77743 3345666667778888888887 553 789999999999999999998877766554 36778888765 67
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.++++.+...+ ...|+.+++.+++
T Consensus 215 r~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 88888888776442 3468888877755
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=6e-14 Score=171.97 Aligned_cols=203 Identities=22% Similarity=0.336 Sum_probs=144.4
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEe
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 397 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~i 397 (817)
..-.++.++|.++..+.+.+++ .. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l---~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVL---SR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHH---hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 4457899999998655544443 22 334568999999999999999999975 6788998
Q ss_pred echhhH--HHhhccchHHHHHHHHHHHhc-CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEE
Q 003473 398 SASEFV--ELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 474 (817)
Q Consensus 398 s~s~~~--~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 474 (817)
+.+.+. ..|.|..+.+++.+|+.+... .|+||||||||.|.+..... +. ....|.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~----~d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GA----MDAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---ch----hHHHHHhchhh----hcCceE
Confidence 888776 468899999999999998654 58999999999997543211 11 11223333222 356799
Q ss_pred EEEEcCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCC----CCCcccCCHHHHHhhcCCC-----
Q 003473 475 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMTTGF----- 540 (817)
Q Consensus 475 VIaATN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~----l~l~~dvdl~~LA~~t~G~----- 540 (817)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..+.. +.+.+ ..+...+..+.+|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d-~~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITD-PAIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCH-HHHHHHHHhccccccccC
Confidence 999998764 47999999 997 589999999999999988765432 22222 2344555555444
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003473 541 TGADLANLVNEAALLAG 557 (817)
Q Consensus 541 SgaDL~~Lv~eAal~A~ 557 (817)
-+.-.-.++++|+..+.
T Consensus 381 lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIR 397 (852)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34556677888776553
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=4.9e-14 Score=158.64 Aligned_cols=190 Identities=20% Similarity=0.288 Sum_probs=129.7
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE------EEe-echhhH
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF------ISC-SASEFV 403 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf------i~i-s~s~~~ 403 (817)
.|++|+|++.+++.|++.+..-+.+ +...+.+.|.++||+||||+|||++|+++|+.+.+.- -.| +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999998764432 3334566788999999999999999999999875531 000 011110
Q ss_pred H----------H-hhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC
Q 003473 404 E----------L-YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 468 (817)
Q Consensus 404 ~----------~-~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~ 468 (817)
. . -...+...+|++++.+... ...|+||||+|.+... ..|.||..|+...
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep~ 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEPP 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcCC
Confidence 0 0 0112345688888887642 3469999999998532 3477888887543
Q ss_pred CCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHH
Q 003473 469 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 548 (817)
Q Consensus 469 ~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 548 (817)
.++++|.+|+.++.|.|++++ |+ ..+.|++|+.++..++|.... + +.+ .....++..+.|..++.+.-+
T Consensus 146 --~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~-~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 146 --PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDP-ETARRAARASQGHIGRARRLA 214 (394)
T ss_pred --CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCH-HHHHHHHHHcCCCHHHHHHHh
Confidence 344555555558999999998 64 589999999998877776322 2 222 235678888888766555443
No 113
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=5.5e-14 Score=158.96 Aligned_cols=181 Identities=29% Similarity=0.362 Sum_probs=117.3
Q ss_pred cccc-ccCchHhHHHHHHHHHH-hcChhHHhh---hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-
Q 003473 331 TFAD-VAGVDEAKEELEEIVEF-LRSPDKYIR---LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 404 (817)
Q Consensus 331 tf~D-V~G~eeaKeeL~eiV~~-Lk~p~~~~~---lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~- 404 (817)
.+++ |+|++++|+.|...+.. ++.-..... -......++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4554 89999999999766532 111100000 01123467999999999999999999999999999999988764
Q ss_pred HhhccchHH-HHHHHHHH----HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------
Q 003473 405 LYVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 468 (817)
Q Consensus 405 ~~vG~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------- 468 (817)
.|+|..... +..++..+ ....++||||||||.+..+..+. ....+-..+.+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~-~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP-SITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC-CcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 577765443 34444432 23467899999999998763221 01111111345567777776421
Q ss_pred CCCcEEEEEEcCCCC----------------------------------------------------CCCcccCCCCccc
Q 003473 469 SNSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFD 496 (817)
Q Consensus 469 ~~~~VIVIaATN~pd----------------------------------------------------~LDpALlRpGRFd 496 (817)
.....++|.|+|-.. -+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345566655410 0234443 5999
Q ss_pred eEEEeeCCCHHHHHHHHH
Q 003473 497 RVVMVETPDKIGREAILK 514 (817)
Q Consensus 497 r~I~V~~Pd~~eR~~ILk 514 (817)
..+.+.+.+.++..+|+.
T Consensus 305 ~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 305 VVATLEELDEEALVRILT 322 (412)
T ss_pred eeeecCCCCHHHHHHHHH
Confidence 999999999999999887
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.3e-14 Score=163.09 Aligned_cols=212 Identities=18% Similarity=0.213 Sum_probs=152.2
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~i 397 (817)
...++.+|+||+|++.+++.|+..+.. .+.|..+|||||||+|||++|+++|+.+.+ |+-.|
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 445678999999999999998887642 346778999999999999999999999865 22222
Q ss_pred -echhhHHH-------hhc---cchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 398 -SASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 398 -s~s~~~~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
+|..+.+. +-| .+...++++.+.+.. ....|++|||+|.+.. ...|.||.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK 141 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLK 141 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHH
Confidence 11111110 011 223456666655432 3346999999998842 34678888
Q ss_pred hccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH
Q 003473 463 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 463 emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 542 (817)
.++. +...+++|.+|+.+..|.+++++ |+. .+.+.+++.++...+++..+.+.+++++++ .+..|+..+.| +.
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dl 214 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SV 214 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8884 34567888888888899999987 654 789999999999999999988877776655 47778888776 78
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+++.++++.+...+ ...|+.+++.+++
T Consensus 215 R~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 215 RDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 88888888766543 2347777666644
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.56 E-value=2.8e-14 Score=152.12 Aligned_cols=195 Identities=22% Similarity=0.223 Sum_probs=139.0
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------EEE
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FIS 396 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp------fi~ 396 (817)
..+...+.+|+|++|++.++..|+..+.- +.-.++|||||||||||+.|+++|.++..| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 45778889999999999999999886643 223369999999999999999999998762 122
Q ss_pred eechhhHHHhhccchHHHHHHHHHHHhc------CC----eEEEEccccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003473 397 CSASEFVELYVGMGASRVRDLFARAKKE------AP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 466 (817)
Q Consensus 397 is~s~~~~~~vG~~~~~vr~lF~~A~~~------aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 466 (817)
.+.|+....- .....+ .-|.+.... .| .||+|||.|.+..+. -+.|...|+.
T Consensus 94 lnaSderGis--vvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda---------------q~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDERGIS--VVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA---------------QAALRRTMED 155 (346)
T ss_pred hccccccccc--chhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHH---------------HHHHHHHHhc
Confidence 2333332211 111111 123333221 12 499999999997543 3677788887
Q ss_pred CCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHH
Q 003473 467 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 546 (817)
Q Consensus 467 ~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~ 546 (817)
+.. .+.+|..||..+.|...+.+ |.. .+.|+..+.+.....|+..+.+.++++++++ ++.|+..+.| +-++..
T Consensus 156 ~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 FSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHH
Confidence 554 46777889999999988887 643 6778888888888899999999999887774 8888988877 555555
Q ss_pred HHHHHHHH
Q 003473 547 NLVNEAAL 554 (817)
Q Consensus 547 ~Lv~eAal 554 (817)
..++.++.
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 66665554
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6e-14 Score=158.35 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=150.4
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE--------
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-------- 395 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi-------- 395 (817)
.+..++.+|+||+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4556788999999999999988776642 456778999999999999999999999876310
Q ss_pred --Eeech------hhHH-------Hhhc---cchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHH
Q 003473 396 --SCSAS------EFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 453 (817)
Q Consensus 396 --~is~s------~~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 453 (817)
.-.|. .+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------------
Confidence 01111 1110 0111 124566776665532 1235999999998852
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHH
Q 003473 454 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 533 (817)
Q Consensus 454 ~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~L 533 (817)
...+.|+..++... ...++|.+|+.+..+-+++.+ |.. .+.+.+++.++....++..+.+.+..++++ .++.+
T Consensus 142 -~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l 214 (397)
T PRK14955 142 -AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLI 214 (397)
T ss_pred -HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence 23466777776432 345666666777888888876 543 788999999999989988887766666655 37778
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHH-hCCccccHHHHHHHH
Q 003473 534 ASMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 573 (817)
Q Consensus 534 A~~t~G~SgaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 573 (817)
+..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 888765 777888888877766532 234578888887766
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.2e-13 Score=158.26 Aligned_cols=213 Identities=22% Similarity=0.272 Sum_probs=146.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------EE
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FI 395 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp--------fi 395 (817)
.+..++.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|+.+.++ +.
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3456678999999999999988887643 3567789999999999999999999987542 11
Q ss_pred Ee-echhhHHH-------hhc---cchHHHHHHHHHHH----hcCCeEEEEccccchhhccCCccccccchHHHHHHHHH
Q 003473 396 SC-SASEFVEL-------YVG---MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 460 (817)
Q Consensus 396 ~i-s~s~~~~~-------~vG---~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 460 (817)
.| +|..+... +.| .+...++++-+.+. .....||+|||+|.+.. ...|.|
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~L 141 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSL 141 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHH
Confidence 11 11111100 011 12344555444332 23467999999998852 235778
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCC
Q 003473 461 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 540 (817)
Q Consensus 461 L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 540 (817)
+..|+.. ...+++|++||.+..|.+++++ |+ ..+.+..++.++....++..+.+.++.++++ .++.|+..+.|
T Consensus 142 Lk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g- 214 (451)
T PRK06305 142 LKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG- 214 (451)
T ss_pred HHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 8888853 3466777788888899999987 54 3789999999999999998887777666544 47778888765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 541 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 541 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.+++.+.++..... .+ ..|+.+++.+++
T Consensus 215 dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 215 SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 666666666654433 22 348888776665
No 118
>PRK08727 hypothetical protein; Validated
Probab=99.54 E-value=4.2e-13 Score=140.98 Aligned_cols=208 Identities=19% Similarity=0.218 Sum_probs=135.5
Q ss_pred CccccccccCchH-hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 328 DTITFADVAGVDE-AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 328 ~~vtf~DV~G~ee-aKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
+..||++.++.+. +...+..+. . ......++|+||+|||||+|++|++.++ +....+++..++.
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~---~---------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALA---A---------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHH---h---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 4568998876544 222222211 1 1223459999999999999999997764 6677777766544
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 404 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 404 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.. +.+.++... ...+|+|||+|.+.... .....+..++..+. .+..-+|+.+.+.|.
T Consensus 82 ~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 82 GR--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---AAGITLLYTARQMPD 138 (233)
T ss_pred hh--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChh
Confidence 32 233444332 34599999999875322 12334445555442 112224444444565
Q ss_pred CC---CcccCCCCcc--ceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 003473 484 VL---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 484 ~L---DpALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 558 (817)
.+ +++|.+ || ...+.++.|+.+++.+|++.++..+++.+++++ ++.|+..+.| +.+.+.++++.....+..
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLA 214 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 55 789988 76 568899999999999999998877777777664 7888888875 667777777766554544
Q ss_pred hCCccccHHHHHHHHHH
Q 003473 559 LNKVVVEKIDFIHAVER 575 (817)
Q Consensus 559 ~~~~~It~~d~~~Al~r 575 (817)
.+ ..||...+.+.+.+
T Consensus 215 ~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 215 AK-RRVTVPFLRRVLEE 230 (233)
T ss_pred hC-CCCCHHHHHHHHhh
Confidence 44 46888887777643
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.53 E-value=3.5e-13 Score=145.94 Aligned_cols=205 Identities=23% Similarity=0.274 Sum_probs=138.4
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeec
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 399 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g-----vpfi~is~ 399 (817)
+...+.+|+|++|.+++++.|...+.. ...| ++||+||||||||++++++++++. .+++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 556678999999999999988876632 1122 589999999999999999999863 34555544
Q ss_pred hhhHHHhhccchHHHHHHHHHHHh------cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcE
Q 003473 400 SEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 473 (817)
Q Consensus 400 s~~~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~V 473 (817)
++-. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++....+ .
T Consensus 77 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~ 133 (319)
T PRK00440 77 SDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--T 133 (319)
T ss_pred cccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--C
Confidence 3321 11122222222211 23569999999988421 123455555544433 3
Q ss_pred EEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 003473 474 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 553 (817)
Q Consensus 474 IVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 553 (817)
.+|.++|.+..+.+++.+ |+. .+.+++++.++...+++.++.+.++.++++ .++.++..+.| +.+.+.+.++.++
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 455567777777777776 654 689999999999999999998887777665 47888887765 5555555555443
Q ss_pred HHHHHhCCccccHHHHHHHHH
Q 003473 554 LLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 554 l~A~r~~~~~It~~d~~~Al~ 574 (817)
.. ...|+.+++..++.
T Consensus 209 ~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 AT-----GKEVTEEAVYKITG 224 (319)
T ss_pred Hc-----CCCCCHHHHHHHhC
Confidence 32 35789988887763
No 120
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=2.9e-13 Score=142.33 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=126.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccC
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 442 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 442 (817)
..+++|+||+|||||+|++|+++++ +..+++++..++.... ..+.+..+. ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 4679999999999999999998764 6778888888876531 122333322 2489999999875321
Q ss_pred CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC---CCcccCCCCcc--ceEEEeeCCCHHHHHHHHHHHH
Q 003473 443 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 517 (817)
Q Consensus 443 ~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRF--dr~I~V~~Pd~~eR~~ILk~~l 517 (817)
..+..+..+++.+ ..+...++|+++..|.. +.|+|++ || ...+.+..|+.+++.++++..+
T Consensus 114 ---------~~~~~Lf~l~n~~---~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ---------DWEEALFHLFNRL---RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ---------HHHHHHHHHHHHH---HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1223344444433 23345677777766643 3688888 76 4678889999999999999777
Q ss_pred hcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 518 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 518 ~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
...++.+++++ ++.|+....+ +.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 77777777664 7888888876 889999999887654433 34568877666654
No 121
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.52 E-value=1e-13 Score=159.22 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=156.1
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS 398 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~is 398 (817)
..++.+|+||+|++.+...|...+..- +.+.+.||+||.|||||++||.+|+.++|. +..|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 356778999999999999999988763 345568999999999999999999988653 22221
Q ss_pred -c--------hhhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhh
Q 003473 399 -A--------SEFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 463 (817)
Q Consensus 399 -~--------s~~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e 463 (817)
| .++++. -...+...+|++.+++.- ....|.+|||+|.|. .+.+|.||..
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKT 142 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKT 142 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcc
Confidence 1 112211 123355778888888753 335599999999985 3567999999
Q ss_pred ccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHH
Q 003473 464 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 543 (817)
Q Consensus 464 mdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 543 (817)
++ ++...|++|.||..++.+++.+++ |. .++.+..-+.++....|...+.++++..+++ .+..+|+...| |.+
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R 215 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR 215 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-Chh
Confidence 98 556789999999999999999988 43 3677999999999999999999988877665 48888999988 899
Q ss_pred HHHHHHHHHHHHH
Q 003473 544 DLANLVNEAALLA 556 (817)
Q Consensus 544 DL~~Lv~eAal~A 556 (817)
|..++++.|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999999987665
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.2e-13 Score=159.86 Aligned_cols=209 Identities=19% Similarity=0.222 Sum_probs=146.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE------Ee-
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI------SC- 397 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi------~i- 397 (817)
+..++.+|++++|++++++.|...+.. .+.+.++||+||||||||++|+++|+.+++... .|
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 455678999999999999999887753 234567999999999999999999999876311 00
Q ss_pred echhhH-------------HHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHH
Q 003473 398 SASEFV-------------ELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 460 (817)
Q Consensus 398 s~s~~~-------------~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 460 (817)
.|..+. +.....+...+|++++.+... ...|++|||+|.|.. ...|.|
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naL 141 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNAL 141 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHH
Confidence 011000 011224456788888877532 235999999998842 345788
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCC
Q 003473 461 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 540 (817)
Q Consensus 461 L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 540 (817)
|..|+. ....+++|++|+.++.|.+.+++ |+ ..+.|..++.++....++..+.+.++.+.++. +..++..+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-
Confidence 888884 33557788888888888889887 54 47889999998888888887777666665553 7778888776
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 541 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 541 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
+.+++.++++...++. ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 5577777776544331 2355555443
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=2.3e-13 Score=155.81 Aligned_cols=192 Identities=13% Similarity=0.210 Sum_probs=132.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHhhccchH---HHHHHHHHHHhcCCeEEEEccccch
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 437 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~~~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 437 (817)
..+++||||+|||||+|++|+++++ +..++++++.+|...+...... .+.++.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999854 5788999999988766543221 222222222 24569999999988
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC---CCCcccCCCCccc--eEEEeeCCCHHHHHHH
Q 003473 438 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAI 512 (817)
Q Consensus 438 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---~LDpALlRpGRFd--r~I~V~~Pd~~eR~~I 512 (817)
..+. .....+..++..+. ...+.+||++...|. .+++.|.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~k~----------~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SYKE----------KTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cCCH----------HHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 5321 12223333333322 122334554444443 45788887 774 6788999999999999
Q ss_pred HHHHHhcCCC--CCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC-CccccHHHHHHHHHHH
Q 003473 513 LKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERS 576 (817)
Q Consensus 513 Lk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-~~~It~~d~~~Al~rv 576 (817)
|+.++...++ .++++ .++.|+..+.| +.+.|.++++.+...+.... ...|+.+.+.+++...
T Consensus 284 L~~~~~~~gl~~~l~~e-vl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEE-AINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHH-HHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999987654 35554 37778888876 89999999999886665542 3679999988888654
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.9e-13 Score=158.74 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=147.5
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE-----Eee
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS 398 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi-----~is 398 (817)
++..++.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4566788999999999999998877643 245667899999999999999999998865321 111
Q ss_pred -chhhHHHh-------------hccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHH
Q 003473 399 -ASEFVELY-------------VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 460 (817)
Q Consensus 399 -~s~~~~~~-------------vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L 460 (817)
|..+.... ...+...++++.+.+.. ....||+|||+|.|.. ..+|.|
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naL 140 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNAL 140 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHH
Confidence 11111000 01223456666554432 2245999999998742 345778
Q ss_pred HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCC
Q 003473 461 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 540 (817)
Q Consensus 461 L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 540 (817)
+..|+... ..+++|.+|+..+.+.+.+.+ |+. .+.|..++..+...+++..+.+.++.++++ .+..|+..+.|
T Consensus 141 Lk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G- 213 (585)
T PRK14950 141 LKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG- 213 (585)
T ss_pred HHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88887543 346666677777778888876 543 688999999999999998888777766655 36778888766
Q ss_pred CHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 541 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 541 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.+++.+.++..+.+ +...|+.+++...+
T Consensus 214 dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 788888887765443 23458887776544
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.4e-13 Score=159.10 Aligned_cols=216 Identities=16% Similarity=0.233 Sum_probs=149.6
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 394 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf---------- 394 (817)
...++.+|+||+|++.+++.|+..+.. .+.+.++||+||||||||++|+++|+.+.+.-
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 455778999999999999988876532 46677899999999999999999999987631
Q ss_pred -----EEe-echhhHH-------Hhhc---cchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHH
Q 003473 395 -----ISC-SASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 454 (817)
Q Consensus 395 -----i~i-s~s~~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 454 (817)
-.| +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 000 1111110 0111 124567777666632 2345999999998852
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHH
Q 003473 455 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 534 (817)
Q Consensus 455 ~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 534 (817)
...|.|+..|+... ..+++|.+|+.++.|.+.+.+ |. ..+.+..++.++....++..+.+.+..++++ .++.|+
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La 215 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIA 215 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 23577888887533 345666666777888888887 43 4899999999999988888887766666555 477788
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH-HhCCccccHHHHHHHH
Q 003473 535 SMTTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 573 (817)
Q Consensus 535 ~~t~G~SgaDL~~Lv~eAal~A~-r~~~~~It~~d~~~Al 573 (817)
..+.| +.+++.+.++....++. ......|+.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88865 67777777776665552 1224568877776655
No 126
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=5.6e-13 Score=144.33 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=81.7
Q ss_pred EEEEEcCC------------CCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 474 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 474 IVIaATN~------------pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
++|.|||+ |+-++..|+. |. ..|...+++.++.++|++..+...++.++++ .++.|+....--|
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~etS 397 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEETS 397 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhhh
Confidence 67778886 6677777776 53 3677788999999999999999888887766 4888888877777
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
-+-..+|+.-|...|.++++..|..+|+++|.+-
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 8888899999999999999999999999998754
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.50 E-value=2.8e-13 Score=141.26 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=126.0
Q ss_pred Ccccccccc-Cc--hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeec
Q 003473 328 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 399 (817)
Q Consensus 328 ~~vtf~DV~-G~--eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~ 399 (817)
+..||++.+ |. +.+...++.+.+. + ...-..++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~---~-------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN---P-------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS---T-------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc---C-------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899986 52 3333333333322 2 1123358999999999999999999874 678999999
Q ss_pred hhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 400 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 400 s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.+|...+..........-|..... ...+|+||++|.+..+ ......+..++..+- .+.+.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~---~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK----------QRTQEELFHLFNRLI---ESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHH---HTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc----------hHHHHHHHHHHHHHH---hhCCeEEEEeC
Confidence 999876654322211122322222 3459999999998633 222333444444432 23445677666
Q ss_pred CCCCCC---CcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 003473 480 NRSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 554 (817)
Q Consensus 480 N~pd~L---DpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 554 (817)
..|..| ++.|.+ ||. ..+.+..|+.+.|.+|++..+..+++.+++++ ++.|+....+ +.++|..+++.-..
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 666544 567766 654 58899999999999999999999999888775 7778888764 88999998887665
Q ss_pred HH
Q 003473 555 LA 556 (817)
Q Consensus 555 ~A 556 (817)
.+
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 128
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=3.5e-13 Score=150.96 Aligned_cols=175 Identities=33% Similarity=0.459 Sum_probs=127.3
Q ss_pred cccCchHhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhc-c
Q 003473 334 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 409 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~-Lk~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~~vG-~ 409 (817)
-|+|++++|+.+...+.. .+.......+ ....|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999766653 1111100001 1235799999999999999999999999999999999988875 5777 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003473 410 GASRVRDLFARAK------------------------------------------------------------------- 422 (817)
Q Consensus 410 ~~~~vr~lF~~A~------------------------------------------------------------------- 422 (817)
.+..++++|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566777766650
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 003473 423 ------------------------------------------------------------------------KEAPSIIF 430 (817)
Q Consensus 423 ------------------------------------------------------------------------~~aP~ILf 430 (817)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEcC----CCCCCCcccCCCCccceE
Q 003473 431 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 498 (817)
Q Consensus 431 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaATN----~pd~LDpALlRpGRFdr~ 498 (817)
|||||.++.+.... +.+-..+.+-+.||..++|-. ...+|++||+-- .|+.|-|.|. |||...
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999999765221 223333456678888888742 246788998763 4666777886 699999
Q ss_pred EEeeCCCHHHHHHHH
Q 003473 499 VMVETPDKIGREAIL 513 (817)
Q Consensus 499 I~V~~Pd~~eR~~IL 513 (817)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=8e-13 Score=138.71 Aligned_cols=195 Identities=23% Similarity=0.350 Sum_probs=137.5
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 402 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~ 402 (817)
....+.+++++|++..|+.|.+-...+.. +.+..++||+|++|||||+++||+..+. |..++.++..++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34578999999999999999876544332 5678899999999999999999999876 788898887766
Q ss_pred HHHhhccchHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC--CCCCcEEEEEEc
Q 003473 403 VELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 479 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~~~~~VIVIaAT 479 (817)
.. +.++++..+. ..+-|||+|++- +. .+ +.....|...|||- ....+|++.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe----------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-FE----------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-CC----------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 43 4455665553 345699999863 11 11 12235555666654 235789999999
Q ss_pred CCCCCCCcccC---------------------CCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCH--HHHHh
Q 003473 480 NRSDVLDPALR---------------------RPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDL--GDIAS 535 (817)
Q Consensus 480 N~pd~LDpALl---------------------RpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl--~~LA~ 535 (817)
|+-+.+.+... -..||...|.|..|+.++-.+|++.++.+.+++++.+ ... -..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 98554432211 1248999999999999999999999998887766532 111 12244
Q ss_pred hcCCCCHHHHHHHHHH
Q 003473 536 MTTGFTGADLANLVNE 551 (817)
Q Consensus 536 ~t~G~SgaDL~~Lv~e 551 (817)
.-.|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5566777766666553
No 130
>PRK06620 hypothetical protein; Validated
Probab=99.49 E-value=4e-13 Score=139.64 Aligned_cols=196 Identities=14% Similarity=0.208 Sum_probs=129.6
Q ss_pred CCccccccccCch---HhHHHHHHHHHHhcChhHHhhhCCCC-CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 327 GDTITFADVAGVD---EAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 327 ~~~vtf~DV~G~e---eaKeeL~eiV~~Lk~p~~~~~lg~~~-pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
.+..||++++--+ .+...++++.+ .+ +..+ -+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 3556898887544 34444444322 11 1222 1679999999999999999999988764433 1111
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
. .+.+ . ...+|+|||||.+. + ..+-.+++.+. .+.+.++|+++..|
T Consensus 79 ~-----------~~~~----~-~~d~lliDdi~~~~-----------~----~~lf~l~N~~~---e~g~~ilits~~~p 124 (214)
T PRK06620 79 N-----------EEIL----E-KYNAFIIEDIENWQ-----------E----PALLHIFNIIN---EKQKYLLLTSSDKS 124 (214)
T ss_pred c-----------hhHH----h-cCCEEEEeccccch-----------H----HHHHHHHHHHH---hcCCEEEEEcCCCc
Confidence 0 0111 1 23589999999441 1 12333333332 23457888887666
Q ss_pred CC--CCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 003473 483 DV--LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 483 d~--LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r 558 (817)
.. + |+|++ |+. ..+.+..|+.+++..+++.++...++.+++++ ++.|+....+ +.+.+.++++.....+..
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 54 5 78887 664 47899999999999999999987778777775 7888888876 889999999886544443
Q ss_pred hCCccccHHHHHHHH
Q 003473 559 LNKVVVEKIDFIHAV 573 (817)
Q Consensus 559 ~~~~~It~~d~~~Al 573 (817)
.+..||...+.+++
T Consensus 200 -~~~~it~~~~~~~l 213 (214)
T PRK06620 200 -SKRKITISLVKEVL 213 (214)
T ss_pred -cCCCCCHHHHHHHh
Confidence 33568887777664
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=1.7e-12 Score=153.96 Aligned_cols=221 Identities=23% Similarity=0.307 Sum_probs=139.3
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcE
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPF 394 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpf 394 (817)
+..++-+|++++|++.+...+...+. ...+.+++|+||||||||++|+++++.. +.+|
T Consensus 146 ~~~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 146 SLLRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hhcCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 33456789999999999887654431 1235579999999999999999998755 4689
Q ss_pred EEeechhhH-------HHhhccchHH----HHHHHHH----------HHhcCCeEEEEccccchhhccCCccccccchHH
Q 003473 395 ISCSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 453 (817)
Q Consensus 395 i~is~s~~~-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 453 (817)
+.++|..+. ....|..... .+..+.. .......+|||||++.|....+
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q----------- 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ----------- 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------
Confidence 999987541 1112211110 1111110 0012245999999998754322
Q ss_pred HHHHHHHHhhc-----c------------------CCCCCCcEEEEEEc-CCCCCCCcccCCCCccceEEEeeCCCHHHH
Q 003473 454 EQTLNQLLTEM-----D------------------GFDSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIGR 509 (817)
Q Consensus 454 ~~~Ln~LL~em-----d------------------g~~~~~~VIVIaAT-N~pd~LDpALlRpGRFdr~I~V~~Pd~~eR 509 (817)
..+..++..- + .-.....+++|++| +.++.++++|++ ||. .+.+++++.++.
T Consensus 283 -~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi 358 (615)
T TIGR02903 283 -NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDI 358 (615)
T ss_pred -HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHH
Confidence 1122222110 0 00112345666554 668889999987 886 678889999999
Q ss_pred HHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh--------CCccccHHHHHHHHHH
Q 003473 510 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------NKVVVEKIDFIHAVER 575 (817)
Q Consensus 510 ~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~--------~~~~It~~d~~~Al~r 575 (817)
..|++..+.+.++.+.++ .++.|+..+. .++...+++..+...+..+ ....|+.+|+.+++..
T Consensus 359 ~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999999998765555544 3666777653 5666666666665444221 2347899999988854
No 132
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.47 E-value=6.3e-13 Score=150.02 Aligned_cols=179 Identities=30% Similarity=0.377 Sum_probs=115.3
Q ss_pred cccCchHhHHHHHHHHHH----hcCh-hHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hh
Q 003473 334 DVAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 406 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~----Lk~p-~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~~ 406 (817)
-|+|++++++.+...+.. +... .....-+. ..+.++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 369999999999776632 1110 00000000 12457999999999999999999999999999999887653 47
Q ss_pred hccc-hHHHHHHHHHH----HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------CC
Q 003473 407 VGMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 470 (817)
Q Consensus 407 vG~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~ 470 (817)
+|.. ...+..++..+ ....++||||||||.+.+++.+.. ...+-..+.+.+.||..|+|.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 7764 33344444322 234678999999999987543211 0111111245566666665532 12
Q ss_pred CcEEEEEEcCCCC--------------------------------------------------CCCcccCCCCccceEEE
Q 003473 471 SAVIVLGATNRSD--------------------------------------------------VLDPALRRPGRFDRVVM 500 (817)
Q Consensus 471 ~~VIVIaATN~pd--------------------------------------------------~LDpALlRpGRFdr~I~ 500 (817)
.+.++|.|+|-.. -+.|+|+ ||+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 3467777777510 0224444 59999999
Q ss_pred eeCCCHHHHHHHHHH
Q 003473 501 VETPDKIGREAILKV 515 (817)
Q Consensus 501 V~~Pd~~eR~~ILk~ 515 (817)
+.+.+.++..+|+..
T Consensus 315 f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 315 LEKLDEEALIAILTK 329 (413)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998876
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=3.2e-13 Score=148.86 Aligned_cols=220 Identities=22% Similarity=0.313 Sum_probs=133.8
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeech
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 400 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi~is~s 400 (817)
....|++|+|++++++.|.-.+. + ....++||+||||||||++|+++|+-+ ++|+-..+..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---c---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45679999999999998764221 0 112469999999999999999999987 4432211100
Q ss_pred ---hh---------------HHHhhccchHHHHH--HHHHH-------------HhcCCeEEEEccccchhhccCCcccc
Q 003473 401 ---EF---------------VELYVGMGASRVRD--LFARA-------------KKEAPSIIFIDEIDAVAKSRDGRFRI 447 (817)
Q Consensus 401 ---~~---------------~~~~vG~~~~~vr~--lF~~A-------------~~~aP~ILfIDEIDaL~~~r~~~~~~ 447 (817)
++ ++...+.++.++-. .|+.+ ......+||||||+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 00 11111111111100 01111 0011249999999987533
Q ss_pred ccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCCC-CCCcccCCCCccceEEEeeCCCH-HHHHHHHH
Q 003473 448 VSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 514 (817)
Q Consensus 448 ~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~V~~Pd~-~eR~~ILk 514 (817)
+.+.|+..|+.- ....++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 334444444321 1235789999999754 68899998 9999999998876 89999998
Q ss_pred HHHhcCC-----------------------------CCCcccC--CHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHhCCc
Q 003473 515 VHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRLNKV 562 (817)
Q Consensus 515 ~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~-G~SgaDL~~Lv~eAal~A~r~~~~ 562 (817)
....... +.+++++ -+..++..+. .-.-+++. +++.|...|..+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7543210 0011100 0111222332 12345665 999999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 003473 563 VVEKIDFIHAVERSI 577 (817)
Q Consensus 563 ~It~~d~~~Al~rvi 577 (817)
.|+.+|+..+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999987774443
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=8.5e-13 Score=158.98 Aligned_cols=165 Identities=22% Similarity=0.320 Sum_probs=116.2
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-----Hhhc
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 408 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-----~~vG 408 (817)
.|+|++++++.|.+.+...+..-. -..+|...+||+||||||||++|+++|..++.+|+.++++++.+ ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998865432100 01123345999999999999999999999999999999998854 2333
Q ss_pred cchHH-----HHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC--C-------CCCcEE
Q 003473 409 MGASR-----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D-------SNSAVI 474 (817)
Q Consensus 409 ~~~~~-----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~-------~~~~VI 474 (817)
..... -..+.+..+....|||||||||.+.+ .+.+.|+..||.- . .-.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 22111 11233334555668999999999752 2456666666522 1 114688
Q ss_pred EEEEcCCC-------------------------CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 003473 475 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 518 (817)
Q Consensus 475 VIaATN~p-------------------------d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~ 518 (817)
||+|||.- ..+.|+++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 124567766 9999999999999999999987765
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=1.3e-12 Score=139.64 Aligned_cols=187 Identities=24% Similarity=0.252 Sum_probs=115.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh------hHHHhhccchHHHHH--------------------HHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVELYVGMGASRVRD--------------------LFAR 420 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~------~~~~~vG~~~~~vr~--------------------lF~~ 420 (817)
..+||+||||||||++|+++|..+|.||+.++|.. ++..+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999987753 332222211111111 1122
Q ss_pred HHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc----cCCC-------CCCcEEEEEEcCCCC-----C
Q 003473 421 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM----DGFD-------SNSAVIVLGATNRSD-----V 484 (817)
Q Consensus 421 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em----dg~~-------~~~~VIVIaATN~pd-----~ 484 (817)
|.. ...+|+|||||.+..+ ....|..++.+- .+.. .+.++.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~~~~------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKPE------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhCCHH------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 2359999999986432 223333333321 0000 224678999999762 5
Q ss_pred CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHH---Hh--h----cCCCCHHHHHHHHHHHHHH
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---AS--M----TTGFTGADLANLVNEAALL 555 (817)
Q Consensus 485 LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~L---A~--~----t~G~SgaDL~~Lv~eAal~ 555 (817)
++++|++ || ..+.++.|+.++..+|++.+.. ++++. .+.+ +. + ....+ ++..+.-|...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~~-~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~ 236 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAEDS-AATIVRLVREFRASGDEITSG---LRASLMIAEVA 236 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHHH-HHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHH
Confidence 6889998 88 5889999999999999998752 22221 2222 11 1 11223 44445545444
Q ss_pred HHHhCCccccHHHHHHHHHHHhc
Q 003473 556 AGRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi~ 578 (817)
+....+..++.+||.+.+..++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHhc
Confidence 55556778888888888776654
No 136
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=3.3e-13 Score=151.25 Aligned_cols=176 Identities=30% Similarity=0.431 Sum_probs=128.9
Q ss_pred cccCchHhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhc-c
Q 003473 334 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 409 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~-Lk~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~~vG-~ 409 (817)
.|+|++++|+.+...+.. ++.......+ ....|+++||+||||||||++|+++|..+++||+.++++.|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999876632 1111000000 0123789999999999999999999999999999999999987 5888 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003473 410 GASRVRDLFARAK------------------------------------------------------------------- 422 (817)
Q Consensus 410 ~~~~vr~lF~~A~------------------------------------------------------------------- 422 (817)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4677777777771
Q ss_pred ---h--------------------------------------------------------------------cCCeEEEE
Q 003473 423 ---K--------------------------------------------------------------------EAPSIIFI 431 (817)
Q Consensus 423 ---~--------------------------------------------------------------------~aP~ILfI 431 (817)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12349999
Q ss_pred ccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEc----CCCCCCCcccCCCCccceEE
Q 003473 432 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGRFDRVV 499 (817)
Q Consensus 432 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpGRFdr~I 499 (817)
||||.++.+.+.. +.+-..+.+-..||..++|-. ...+|+|||+- ..|+.|-|.|. |||..++
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 9999999765321 223333456678888888732 24678898876 34667778887 5999999
Q ss_pred EeeCCCHHHHHHHHH
Q 003473 500 MVETPDKIGREAILK 514 (817)
Q Consensus 500 ~V~~Pd~~eR~~ILk 514 (817)
.+..++.++...||.
T Consensus 331 ~L~~L~~~dL~~ILt 345 (443)
T PRK05201 331 ELDALTEEDFVRILT 345 (443)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999988883
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=2e-12 Score=156.44 Aligned_cols=166 Identities=26% Similarity=0.334 Sum_probs=117.6
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH-----h
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-----Y 406 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~-----~ 406 (817)
+.|+|++++++.+.+.+...+..- .....|. .+||+||||||||++|+++|..++.+++.++++++.+. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~----~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGL----GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCC----CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 468899999998888776532110 0012344 48999999999999999999999999999999988652 2
Q ss_pred hccc-----hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---------CCCc
Q 003473 407 VGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSA 472 (817)
Q Consensus 407 vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~ 472 (817)
.|.. ......+.+..+....+||+|||||.+.+ .+.+.|++.||... .-.+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 2221 11223344555666678999999998742 24466666666421 1235
Q ss_pred EEEEEEcCCCC-------------------------CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 003473 473 VIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 519 (817)
Q Consensus 473 VIVIaATN~pd-------------------------~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~ 519 (817)
++||+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 78999998631 24566664 99999999999999999999988753
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.3e-12 Score=142.27 Aligned_cols=229 Identities=21% Similarity=0.259 Sum_probs=164.4
Q ss_pred CCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeech
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 400 (817)
Q Consensus 326 ~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s 400 (817)
-.+..||++.+.-+.-.....-....-.+| +..-..++||||.|+|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~-------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP-------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc-------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 356789999876554433333333333332 1233459999999999999999999876 3468999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 401 ~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
+|...++......-.+-|+.-. +-.+++||+|+.+..+.. ...+.-.++|.+.. +.+-||+.+..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l~~-------~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNALLE-------NGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHHHh-------cCCEEEEEcCC
Confidence 9988777665444445566655 345899999999975431 23444445555443 24457777767
Q ss_pred CCCCC---CcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 481 RSDVL---DPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 481 ~pd~L---DpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
.|..| +|.|.+ ||. ..+.+.+||.+.|..||+..+...++.+++++ +..++..... +.++|+.+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 77654 588887 775 57788899999999999999988888888775 6777777654 889999999998888
Q ss_pred HHHhCCccccHHHHHHHHHHHhcchh
Q 003473 556 AGRLNKVVVEKIDFIHAVERSIAGIE 581 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi~g~e 581 (817)
|...++ .||.+.+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 876665 8999999998877665433
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.4e-12 Score=150.15 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=146.7
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE--------E
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------S 396 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi--------~ 396 (817)
...++.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|..+.|.-. .
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 345678999999999999988887642 356778999999999999999999998764211 1
Q ss_pred e-echhhHHH-------hh---ccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 397 C-SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 397 i-s~s~~~~~-------~v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
| +|..+.+. +- ..+...++++.+.+... ...|++|||+|.+.. ...+.|+
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLL 142 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFL 142 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHH
Confidence 1 11111110 00 11235677777766432 234999999998842 2457888
Q ss_pred hhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 462 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 462 ~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
..|+... ..+++|.+|+.+..|-++|++ |. ..+.|..++.++....++..+.+.++.++++ .++.|+..+.| +
T Consensus 143 K~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-d 215 (614)
T PRK14971 143 KTLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-G 215 (614)
T ss_pred HHHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8888533 455677777777888899987 54 3799999999999999999888877766554 47778888755 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 542 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 542 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
.+++.++++....++ +.. |+.+++.+.+
T Consensus 216 lr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 216 MRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 777777776655444 222 6665555443
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-11 Score=138.18 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=153.2
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----EEEeechhhHHHh-
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY- 406 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-----fi~is~s~~~~~~- 406 (817)
+.+.+.++..+.|..++...- ....|.++++|||||||||.+++.++.++.-+ +++++|-...+.|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 448899998888887754422 24456679999999999999999999987433 8999986554321
Q ss_pred --------------hccchHH-HHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003473 407 --------------VGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 470 (817)
Q Consensus 407 --------------vG~~~~~-vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 470 (817)
.|..... ...+++.... ...-||++||+|.|..+.+ .+|..|+...+.. .
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~--~ 154 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--c
Confidence 1122222 2222222222 3456999999999975432 5677777776654 5
Q ss_pred CcEEEEEEcCCC---CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC--CCCCcccCCHHHHH---hhcCCCCH
Q 003473 471 SAVIVLGATNRS---DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIA---SMTTGFTG 542 (817)
Q Consensus 471 ~~VIVIaATN~p---d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA---~~t~G~Sg 542 (817)
.+|.+|+.+|.. +.+||.+.+.-. ...|.|++++.++...|++...... ...+++++ ++.+| ....| +.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-DA 231 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-DA 231 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-cH
Confidence 778999999876 578888877322 3458999999999999999988642 11223332 33333 33333 55
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 576 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 576 (817)
+-...+++.|+..|.+++...++.+++..|.+..
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 6677899999999999999999999999995443
No 141
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=2.1e-12 Score=143.07 Aligned_cols=221 Identities=21% Similarity=0.275 Sum_probs=139.9
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEeec-
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSA- 399 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi~is~- 399 (817)
+...|.+|+|++++|..|.-.+ .+| ...|+||.||+|||||++|++++..+ +.||. +..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 4568999999999999876533 222 33589999999999999999997765 23443 111
Q ss_pred ------hhhHHH-------------------hhccchHH------HHHHHHHHH---------hcCCeEEEEccccchhh
Q 003473 400 ------SEFVEL-------------------YVGMGASR------VRDLFARAK---------KEAPSIIFIDEIDAVAK 439 (817)
Q Consensus 400 ------s~~~~~-------------------~vG~~~~~------vr~lF~~A~---------~~aP~ILfIDEIDaL~~ 439 (817)
+++... -.|..+.+ +...|.... .....+||||||+.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 011100 01222222 111222111 11234999999999864
Q ss_pred ccCCccccccchHHHHHHHHHHhhcc---------CC--CCCCcEEEEEEcCCCC-CCCcccCCCCccceEEEeeCCC-H
Q 003473 440 SRDGRFRIVSNDEREQTLNQLLTEMD---------GF--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-K 506 (817)
Q Consensus 440 ~r~~~~~~~~~~e~~~~Ln~LL~emd---------g~--~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~V~~Pd-~ 506 (817)
..+ +.|+..|+ |. ....++++|++.|..+ .+.++|+. ||..++.+..|+ .
T Consensus 159 ~~Q---------------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 HLV---------------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred HHH---------------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 322 23344332 11 1235789998888665 68999998 999999999997 5
Q ss_pred HHHHHHHHHHHhcCC-----------------------------CCCcccC--CHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 003473 507 IGREAILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 507 ~eR~~ILk~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~G~SgaDL~~Lv~eAal~ 555 (817)
+.+.+|++....... +.+++++ -+..++..+.--|.+--..+++.|...
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 899999987543110 0111110 012223333333566667888889999
Q ss_pred HHHhCCccccHHHHHHHHHHHhc
Q 003473 556 AGRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 556 A~r~~~~~It~~d~~~Al~rvi~ 578 (817)
|.-+++..|+.+|+..+..-++.
T Consensus 302 Aal~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999876664
No 142
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=3e-12 Score=134.18 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=118.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCcccc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 447 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 447 (817)
.++|+||+|+|||+|+++++...++.++ +..++...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 4999999999999999999998776644 3333332221 11111 3789999997631
Q ss_pred ccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC---CCcccCCCCccc--eEEEeeCCCHHHHHHHHHHHHhcCCC
Q 003473 448 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKEL 522 (817)
Q Consensus 448 ~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~---LDpALlRpGRFd--r~I~V~~Pd~~eR~~ILk~~l~~~~l 522 (817)
...+ +-.+++.+. .....+||+++..|.. ..++|++ ||. ..+.+..|+.++|.+|++.++...++
T Consensus 102 -~~~~----lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 -DETG----LFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred -CHHH----HHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1122 333333322 2244577766655543 3678887 664 78999999999999999999998888
Q ss_pred CCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 523 PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 523 ~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
.+++++ ++.|++...+ +.+.+..+++.....+...+ ..||...+.+++..
T Consensus 172 ~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 172 YVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred CCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 887775 7888888875 77777777777666665544 55888888887754
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=4.6e-12 Score=140.03 Aligned_cols=216 Identities=24% Similarity=0.309 Sum_probs=136.1
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEE--------
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 395 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi-------- 395 (817)
.|..|+|++++|..|.-.+ -+| ...+++|.|+||+|||++++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999998764322 122 23579999999999999999999866 33332
Q ss_pred Ee-echh----------------hHHHhhccchHHH------HH------------HHHHHHhcCCeEEEEccccchhhc
Q 003473 396 SC-SASE----------------FVELYVGMGASRV------RD------------LFARAKKEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 396 ~i-s~s~----------------~~~~~vG~~~~~v------r~------------lF~~A~~~aP~ILfIDEIDaL~~~ 440 (817)
.+ +|.. |.++-.|..+.++ .. ++.+| ...+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 10 1110 0111111111111 11 11111 2359999999987543
Q ss_pred cCCccccccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCCC-CCCcccCCCCccceEEEeeCCCH-H
Q 003473 441 RDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 507 (817)
Q Consensus 441 r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~pd-~LDpALlRpGRFdr~I~V~~Pd~-~ 507 (817)
. .+.|+..|+.- ....++++|+++|..+ .+.++|+. ||..++.++.|+. +
T Consensus 147 ~---------------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 L---------------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred H---------------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 2 23344444311 1235689999988655 68999998 9999999999975 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCcccC--CHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 508 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 508 eR~~ILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
+|.+|++...... .+.+++++ -+..++..+..-|.+--..+++.|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8899998743221 01111111 0222333443335677778899999999
Q ss_pred HHhCCccccHHHHHHHHHHHhc
Q 003473 557 GRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 557 ~r~~~~~It~~d~~~Al~rvi~ 578 (817)
..+++..|+.+|+..+..-++.
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998876654
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=1.1e-11 Score=147.72 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=138.6
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 390 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------------------- 390 (817)
-|.+|+|++++|..|.-.. .+| ...||||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999997765332 121 12469999999999999999999877
Q ss_pred ---------------CCcEEEeechhhHHHhhccch--HHH--------HHHHHHHHhcCCeEEEEccccchhhccCCcc
Q 003473 391 ---------------EVPFISCSASEFVELYVGMGA--SRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 445 (817)
Q Consensus 391 ---------------gvpfi~is~s~~~~~~vG~~~--~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 445 (817)
..||+.+.++...+..+|... ..+ ..++.+| ...|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 356776655543333333210 000 1111111 2249999999998643
Q ss_pred ccccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCC-CCCCcccCCCCccceEEEeeCCC-HHHHHHH
Q 003473 446 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 512 (817)
Q Consensus 446 ~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~V~~Pd-~~eR~~I 512 (817)
+.+.|+..|+.- ....++++|+|+|.. ..|.++|+. ||+.+|.++.|. .+++.+|
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 334555555421 112468999999954 368889998 999999988774 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCcccCCHHHHHhhc--CCC-CHHHHHHHHHHHHHHHHHhC
Q 003473 513 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 513 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~G~-SgaDL~~Lv~eAal~A~r~~ 560 (817)
++..+... .+.++++ .++.++..+ .|. +.+-...+++-|...|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 0111111 123333322 244 45666678888889999999
Q ss_pred CccccHHHHHHHHHHHhc
Q 003473 561 KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 561 ~~~It~~d~~~Al~rvi~ 578 (817)
+..|+.+|+.+|+.-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999987764
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.33 E-value=1.9e-11 Score=114.39 Aligned_cols=124 Identities=40% Similarity=0.610 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccchHH---HHHHHHHHHhcCCeEEEEccccchh
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 438 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 438 (817)
..++++++||||||||++++.+++.+ +.+++.+++.++........... ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887765433222111 1222334445668899999999873
Q ss_pred hccCCccccccchHHHHHHHHHHhhccCC-CCCCcEEEEEEcCCCC--CCCcccCCCCccceEEEee
Q 003473 439 KSRDGRFRIVSNDEREQTLNQLLTEMDGF-DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 502 (817)
Q Consensus 439 ~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~V~ 502 (817)
.. ....+..++..+... ....++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 111222222222111 1235788889998876 67777776 888776664
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=2.3e-11 Score=148.90 Aligned_cols=196 Identities=26% Similarity=0.337 Sum_probs=128.0
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 405 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~--- 405 (817)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4789999999988887755321100 0134665 7999999999999999999988 468899999988753
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------
Q 003473 406 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 468 (817)
Q Consensus 406 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-------- 468 (817)
|+|.... ..+.+..+.+..|||+|||||...+ .+.+.|++.+|...
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3333221 1234445667779999999986532 24455565555321
Q ss_pred -CCCcEEEEEEcCCCC-----------------------------CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHh
Q 003473 469 -SNSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 518 (817)
Q Consensus 469 -~~~~VIVIaATN~pd-----------------------------~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~ 518 (817)
.-.+.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 014688999998521 13466665 887 889999999999999988775
Q ss_pred cC--------CCC--CcccCCHHHHHhhcCC--CCHHHHHHHHHHHH
Q 003473 519 KK--------ELP--LAKDIDLGDIASMTTG--FTGADLANLVNEAA 553 (817)
Q Consensus 519 ~~--------~l~--l~~dvdl~~LA~~t~G--~SgaDL~~Lv~eAa 553 (817)
+. ++. ++++ ..+.|+....+ +-.+.|.++++.-.
T Consensus 782 ~l~~rl~~~~gi~l~i~d~-a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEA-LVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHH-HHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 41 221 2222 24455555432 34566766665543
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=9.1e-12 Score=136.33 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=99.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH--hhccchHH----------HHHHHHHHHhcCCeEEEEcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 433 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~--~vG~~~~~----------vr~lF~~A~~~aP~ILfIDE 433 (817)
.++|||.||||||||++|+.+|.+++.|++.++++..... .+|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4569999999999999999999999999999998766554 34432111 1123444443 467999999
Q ss_pred ccchhhccCCccccccchHHHHHHHHHHhh-----cc----CCCCCCcEEEEEEcCCCC------------CCCcccCCC
Q 003473 434 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 492 (817)
Q Consensus 434 IDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----md----g~~~~~~VIVIaATN~pd------------~LDpALlRp 492 (817)
||...++ ....|+.+|.. +. .+..+..+.||||+|..+ .|++|++.
T Consensus 143 in~a~p~------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPD------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHH------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9986432 23445556552 11 122445789999999854 46888888
Q ss_pred CccceEEEeeCCCHHHHHHHHHHHH
Q 003473 493 GRFDRVVMVETPDKIGREAILKVHV 517 (817)
Q Consensus 493 GRFdr~I~V~~Pd~~eR~~ILk~~l 517 (817)
||-..+.+++|+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998888999999999999998765
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=9.2e-11 Score=129.26 Aligned_cols=130 Identities=32% Similarity=0.426 Sum_probs=89.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHH--------------HHHHHHhcCCeEEEEc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRD--------------LFARAKKEAPSIIFID 432 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~--------------lF~~A~~~aP~ILfID 432 (817)
+++||.||||||||++|+++|..++.+|+.+.|.......-..+...+.. +|...+ +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 45999999999999999999999999999999976544221111111111 111111 499999
Q ss_pred cccchhhccCCccccccchHHHHHHHHHHhhccC----------CCCCCcEEEEEEcC-----CCCCCCcccCCCCccce
Q 003473 433 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDR 497 (817)
Q Consensus 433 EIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg----------~~~~~~VIVIaATN-----~pd~LDpALlRpGRFdr 497 (817)
||+...+. +.+.|+..|+. +.-..+++||+|+| ....|++|+++ ||..
T Consensus 120 EInra~p~---------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 120 EINRAPPE---------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred ccccCCHH---------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 99876432 33555555543 33456789999999 45678999998 9988
Q ss_pred EEEeeCCCHHHHHHHHHHHH
Q 003473 498 VVMVETPDKIGREAILKVHV 517 (817)
Q Consensus 498 ~I~V~~Pd~~eR~~ILk~~l 517 (817)
.+.++.|+.++-+.++..+.
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 183 RIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEecCCCCchHHHHHHHHhC
Confidence 99999995554444444433
No 149
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.26 E-value=8.6e-11 Score=129.34 Aligned_cols=67 Identities=39% Similarity=0.577 Sum_probs=53.6
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHH
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 404 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g--vpfi~is~s~~~~ 404 (817)
..+.++|+.++++.+--+++..+..+ -..+++||.||||||||.||-++|+++| +||..++++++.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45789999999999999998877632 3567999999999999999999999996 9999999987754
No 150
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=2.4e-10 Score=135.51 Aligned_cols=104 Identities=24% Similarity=0.370 Sum_probs=68.7
Q ss_pred CcEEEEEEcCCC--CCCCcccCCCCccc---eEEEeeC--CC-HHHHHHHHHH---HHhcCC-CC-CcccCCHHHHHh--
Q 003473 471 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKV---HVSKKE-LP-LAKDIDLGDIAS-- 535 (817)
Q Consensus 471 ~~VIVIaATN~p--d~LDpALlRpGRFd---r~I~V~~--Pd-~~eR~~ILk~---~l~~~~-l~-l~~dvdl~~LA~-- 535 (817)
..+.||+++|.. ..+||+|+. ||+ ..+.++. |+ .+.+.++++. .+++.+ .+ ++++ .+..+.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~ 343 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREA 343 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHH
Confidence 368899999975 578999998 998 6666543 44 4555544443 333331 22 2222 1233321
Q ss_pred -hcC------CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHh
Q 003473 536 -MTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 577 (817)
Q Consensus 536 -~t~------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 577 (817)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 245799999999998888888889999999999987654
No 151
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=1.3e-10 Score=129.24 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=125.3
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEe--
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-- 397 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~i-- 397 (817)
..+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3456899999999999999887643 456778999999999999999999998755 21110
Q ss_pred --echhhHHH--------h-h-------------ccchHHHHHHHHHHH----hcCCeEEEEccccchhhccCCcccccc
Q 003473 398 --SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVS 449 (817)
Q Consensus 398 --s~s~~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~ 449 (817)
.|..+... + + .-+...+|++-+... .....|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 11111110 0 0 011234555444332 23456999999999853
Q ss_pred chHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC
Q 003473 450 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID 529 (817)
Q Consensus 450 ~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvd 529 (817)
...|.||..++... .+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++|+...... .++++ .
T Consensus 156 -----~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~ 222 (351)
T PRK09112 156 -----NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-I 222 (351)
T ss_pred -----HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-H
Confidence 34577888888533 345666667888889899987 65 599999999999999998743221 12222 2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHH
Q 003473 530 LGDIASMTTGFTGADLANLVNE 551 (817)
Q Consensus 530 l~~LA~~t~G~SgaDL~~Lv~e 551 (817)
+..++..+.| +++...++++.
T Consensus 223 ~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 223 TEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHHcCC-CHHHHHHHHhc
Confidence 5566666665 55555555543
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=1.1e-10 Score=143.66 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=128.7
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 405 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~---- 405 (817)
+.|+|++++.+.+.+.+......- .-..+|...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 569999999999988776532100 0011334458999999999999999999976 568999999887542
Q ss_pred -hhccch-----HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---------CC
Q 003473 406 -YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 470 (817)
Q Consensus 406 -~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~ 470 (817)
..|... .....+.+..+....+||||||||.+.+ .+.+.|+..|+.-. .-
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 122111 1112334444555567999999997642 23455555554211 11
Q ss_pred CcEEEEEEcCCCCC-------------------------CCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc------
Q 003473 471 SAVIVLGATNRSDV-------------------------LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 519 (817)
Q Consensus 471 ~~VIVIaATN~pd~-------------------------LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~------ 519 (817)
.+.+||+|||.... +.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999997321 3355665 99999999999999999998877642
Q ss_pred -CCC--CCcccCCHHHHHhhcC--CCCHHHHHHHHHHHHHH
Q 003473 520 -KEL--PLAKDIDLGDIASMTT--GFTGADLANLVNEAALL 555 (817)
Q Consensus 520 -~~l--~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~ 555 (817)
.++ .++++ .++.|+.... .+..+.|+++++.....
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 111 12222 2444555422 45567777777665543
No 153
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.24 E-value=9.4e-11 Score=136.53 Aligned_cols=224 Identities=20% Similarity=0.182 Sum_probs=133.1
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEe---echhhHHHhhc
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVG 408 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-pfi~i---s~s~~~~~~vG 408 (817)
-+|.|.+.+|..|.-.+---..+..-.....+...+|||+|+||||||++|+++++.... +|... ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 357899998876643332111111000112234457999999999999999999997753 33321 22222110000
Q ss_pred c---chHHHH-HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CCCCcE
Q 003473 409 M---GASRVR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAV 473 (817)
Q Consensus 409 ~---~~~~vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~V 473 (817)
. +.-.++ ..+..| ...+++|||+|.+.... ...|+..|+.- .-+.++
T Consensus 283 ~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~---------------q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 283 DPETREFTLEGGALVLA---DNGVCCIDEFDKMDDSD---------------RTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred ccCcceEEecCccEEec---CCCEEEEechhhCCHHH---------------HHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 0 000000 011112 23499999999985332 22333334321 113568
Q ss_pred EEEEEcCCCC-------------CCCcccCCCCccceEEEe-eCCCHHHHHHHHHHHHhcCC---------C--C-----
Q 003473 474 IVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE---------L--P----- 523 (817)
Q Consensus 474 IVIaATN~pd-------------~LDpALlRpGRFdr~I~V-~~Pd~~eR~~ILk~~l~~~~---------l--~----- 523 (817)
.||||+|..+ .|++++++ |||..+.+ +.|+.+...+|+++.+.... . .
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEF 422 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHH
Confidence 9999999752 58999999 99986654 68999998888887543210 0 0
Q ss_pred -----------CcccCC---HHHHH-----hh----------cCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 524 -----------LAKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 524 -----------l~~dvd---l~~LA-----~~----------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
+.+.+. .+.+. .+ ..+.|.+.++.+++-|...|..+.+..|+.+|+.+|++
T Consensus 423 l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 423 LRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 001111 11110 01 23568999999999999999999999999999999986
Q ss_pred HH
Q 003473 575 RS 576 (817)
Q Consensus 575 rv 576 (817)
-+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 43
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.24 E-value=1.3e-10 Score=142.46 Aligned_cols=166 Identities=22% Similarity=0.308 Sum_probs=114.6
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH---
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 405 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~--- 405 (817)
+.|+|++++++.+...+...+..- .....|. .+||+||||||||++|+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL----KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc----cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 578999999999988775422100 0112343 47999999999999999999987 468999999887542
Q ss_pred --hhccch-----HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---------C
Q 003473 406 --YVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 469 (817)
Q Consensus 406 --~vG~~~-----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 469 (817)
..|... .....+.+..+....+||+|||+|.+.+ .+.+.|+..|+... .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 222111 1123455556666668999999998642 34566666666321 1
Q ss_pred CCcEEEEEEcCCCCC-------------------------------------CCcccCCCCccceEEEeeCCCHHHHHHH
Q 003473 470 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 512 (817)
Q Consensus 470 ~~~VIVIaATN~pd~-------------------------------------LDpALlRpGRFdr~I~V~~Pd~~eR~~I 512 (817)
-.+.+||+|||.... +.|+++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246899999985321 1244555 8999999999999999999
Q ss_pred HHHHHhc
Q 003473 513 LKVHVSK 519 (817)
Q Consensus 513 Lk~~l~~ 519 (817)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 9887754
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.5e-10 Score=142.07 Aligned_cols=167 Identities=24% Similarity=0.329 Sum_probs=110.9
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh-
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 406 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~- 406 (817)
++.|+|++++.+.+.+.+...+..-. ....| ..+||+||||||||++|+++|..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 45799999999999888865431100 01123 358999999999999999999876 5689999999886531
Q ss_pred ----hccc-----hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC--C-------
Q 003473 407 ----VGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D------- 468 (817)
Q Consensus 407 ----vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--~------- 468 (817)
.|.. ...-..+.+..+....+||||||++.+.+ .+.+.|+..++.. .
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEE
Confidence 2211 01111122233334448999999987642 2345555555421 1
Q ss_pred CCCcEEEEEEcCCC-------------------------CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 003473 469 SNSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 519 (817)
Q Consensus 469 ~~~~VIVIaATN~p-------------------------d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~ 519 (817)
.-.+.+||+|||.. ..+.|+|+. |+|..+.+.+++.++...|++..+.+
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11346788999973 123467776 99999999999999999998887754
No 156
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.23 E-value=1.3e-10 Score=134.70 Aligned_cols=211 Identities=22% Similarity=0.301 Sum_probs=131.9
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------------------
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------- 390 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~------------------- 390 (817)
..|+||.|++.+++.+.-.+ ....+++|+||||||||++|+++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 48999999999977655432 233579999999999999999998632
Q ss_pred ---------CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 391 ---------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 391 ---------gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
..||...+++......+|.+...-...+..|.. .+|||||++.+.+. ++..|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~~---------------~~~~L~ 316 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKRS---------------VLDALR 316 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCHH---------------HHHHHH
Confidence 234544443332222333332222223444433 49999999987532 233344
Q ss_pred hhccCCC-----------CCCcEEEEEEcCCC------C-----------------CCCcccCCCCccceEEEeeCCCHH
Q 003473 462 TEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDKI 507 (817)
Q Consensus 462 ~emdg~~-----------~~~~VIVIaATN~p------d-----------------~LDpALlRpGRFdr~I~V~~Pd~~ 507 (817)
..|+... -..++.+|+++|.- + .|...|+. |||.++.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 4343211 12468999999862 1 47788888 99999999977554
Q ss_pred HH-------------HHHHHHHHhc----CCC---CCcccCCHHH--------------H--HhhcCCCCHHHHHHHHHH
Q 003473 508 GR-------------EAILKVHVSK----KEL---PLAKDIDLGD--------------I--ASMTTGFTGADLANLVNE 551 (817)
Q Consensus 508 eR-------------~~ILk~~l~~----~~l---~l~~dvdl~~--------------L--A~~t~G~SgaDL~~Lv~e 551 (817)
+. ..+.+.+-.. .+. .+..++.-.. + +....++|.+....+++-
T Consensus 395 ~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrv 474 (499)
T TIGR00368 395 KLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKV 474 (499)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 32 2222211110 010 1111111111 1 223346899999999999
Q ss_pred HHHHHHHhCCccccHHHHHHHHH
Q 003473 552 AALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 552 Aal~A~r~~~~~It~~d~~~Al~ 574 (817)
|.-+|..++.+.|+.+|+.+|+.
T Consensus 475 ArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 475 ARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999999974
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.22 E-value=4.5e-10 Score=116.85 Aligned_cols=197 Identities=22% Similarity=0.315 Sum_probs=138.1
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 401 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~ 401 (817)
...+.+.+.+++|++.+|+.|.+-...+.. +.+.++|||+|..|||||+|+||+-++. +..++.|+-.+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 345679999999999999998775544332 5677899999999999999999998876 67789998887
Q ss_pred hHHHhhccchHHHHHHHHHHHhc-CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--CCCcEEEEEE
Q 003473 402 FVELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGA 478 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--~~~~VIVIaA 478 (817)
+.. +-++++..+.. ..-|||+|++-- . .+ +.....|-..|||-- ...+|+|.||
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---e--------~g---d~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF---E--------EG---DDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC---C--------CC---chHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 753 45566666553 346999998621 0 11 123345555666543 2468999999
Q ss_pred cCCCCCCCccc--------------------CCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CCHHH--HHh
Q 003473 479 TNRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGD--IAS 535 (817)
Q Consensus 479 TN~pd~LDpAL--------------------lRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~--LA~ 535 (817)
+|+-+.|+... .-..||...+.|.+++.++-..|+..++++.++++.++ .+.+. .|.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99976554221 12359999999999999999999999998877766432 22222 244
Q ss_pred hcCCCCHHHHHHHHHHH
Q 003473 536 MTTGFTGADLANLVNEA 552 (817)
Q Consensus 536 ~t~G~SgaDL~~Lv~eA 552 (817)
.-.|-||+-..+.++..
T Consensus 261 ~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 261 TRGGRSGRVAWQFIRDL 277 (287)
T ss_pred hcCCCccHhHHHHHHHH
Confidence 44566776666665543
No 158
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.22 E-value=2e-10 Score=124.16 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=141.6
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeech-
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS- 400 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s- 400 (817)
.=+.-+|+..+++.|..+-+.+..|.. .+ +.++||+|++|.|||++++.++... .+|++.+...
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~-----~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKR-----HR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcc-----cC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 335568999999999998888888865 34 4469999999999999999998754 3577777542
Q ss_pred -----hhHH-----Hhh----cc-chHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc
Q 003473 401 -----EFVE-----LYV----GM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 465 (817)
Q Consensus 401 -----~~~~-----~~v----G~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 465 (817)
.|.. .+. .. ....-.......+...+.+|+|||+|.+.. +....++.++|.|-...+
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhh
Confidence 1211 000 11 112223334555667788999999999753 234455666666554433
Q ss_pred CCCCCCcEEEEEEcCCCC--CCCcccCCCCccceEEEeeCCC-HHHHHHHHHHHHhcCCCCCcccCCH----HHHHhhcC
Q 003473 466 GFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTT 538 (817)
Q Consensus 466 g~~~~~~VIVIaATN~pd--~LDpALlRpGRFdr~I~V~~Pd-~~eR~~ILk~~l~~~~l~l~~dvdl----~~LA~~t~ 538 (817)
.-.-.++.+|+-.-.. .-|+.+.+ ||+ .+.++.-. .++...++..+-..-.+.-..++.. ..|-..+.
T Consensus 178 --eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 178 --ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred --ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 2224456666543222 23677766 887 44555432 2455566666554332222333333 33445677
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 539 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 539 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
|. -+++.++++.|+..|.+.|.+.|+.+.++.
T Consensus 253 G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 253 GL-IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred Cc-hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 74 469999999999999999999999988765
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.21 E-value=2.9e-11 Score=111.62 Aligned_cols=127 Identities=34% Similarity=0.454 Sum_probs=83.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhhHHH--------------hhccchHHHHHHHHHHHhcCCeE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 428 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvp---fi~is~s~~~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 428 (817)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.+++.++...|+|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 888887754331 22345567788899998888899
Q ss_pred EEEccccchhhccCCccccccchHHHHHHHHH--HhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCC
Q 003473 429 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 504 (817)
Q Consensus 429 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~L--L~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~P 504 (817)
|||||++.+....... ..... ..............+|+++|......+..+++ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999986443210 00000 00001112235578888888633333444443 88888887655
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.3e-11 Score=141.72 Aligned_cols=161 Identities=29% Similarity=0.428 Sum_probs=119.1
Q ss_pred ccccCchHhHHHHHHHHHH----hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHH
Q 003473 333 ADVAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 405 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~----Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g---vpfi~is~s~~~~~ 405 (817)
+.|+|++++.+.+.+.+.. |++|. +|-..+||.||+|+|||.|||+||..+. ..++.++.|+|++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4699999999999888765 33321 2334578899999999999999999986 89999999999984
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC----
Q 003473 406 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---- 469 (817)
Q Consensus 406 ------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---- 469 (817)
|+|-.+. -.+-+..+.+..|||++|||+.-. ..++|-||+.||.-.-
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCC
Confidence 4444332 234455566667999999998753 2477888888874321
Q ss_pred -----CCcEEEEEEcCCCC----------------------------CCCcccCCCCccceEEEeeCCCHHHHHHHHHHH
Q 003473 470 -----NSAVIVLGATNRSD----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVH 516 (817)
Q Consensus 470 -----~~~VIVIaATN~pd----------------------------~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~ 516 (817)
=.+.++|+|||--. ...|+++. |+|.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 13579999998421 12355555 89999999999999999888887
Q ss_pred Hhc
Q 003473 517 VSK 519 (817)
Q Consensus 517 l~~ 519 (817)
+.+
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 754
No 161
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=4.6e-10 Score=128.32 Aligned_cols=214 Identities=17% Similarity=0.138 Sum_probs=124.9
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-hHHHhhcc
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGM 409 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~-~~~~~vG~ 409 (817)
+.++|.+++.+.+...+. ...+|||+||||||||++|++++..++. +|....+.- ......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 347788887776554332 2346999999999999999999987643 555444321 11112221
Q ss_pred c-hHHH--HHHHHHHHhc---CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---------CCCcEE
Q 003473 410 G-ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVI 474 (817)
Q Consensus 410 ~-~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VI 474 (817)
. .... ..-|...... ...+||+|||..+.+ .+.+.||..|+.-. -..+ +
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~r-f 149 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMR-L 149 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCc-E
Confidence 1 0000 1122222111 223999999986643 34466666663111 1123 4
Q ss_pred EEEEcCCCC---CCCcccCCCCccceEEEeeCCC-HHHHHHHHHHHHhc--CCCCCcccCC-------------------
Q 003473 475 VLGATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSK--KELPLAKDID------------------- 529 (817)
Q Consensus 475 VIaATN~pd---~LDpALlRpGRFdr~I~V~~Pd-~~eR~~ILk~~l~~--~~l~l~~dvd------------------- 529 (817)
+++|||... ...+++.. ||-..+.+++|+ .++..+||...... ...+..+-+.
T Consensus 150 iv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~ 227 (498)
T PRK13531 150 LVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDH 227 (498)
T ss_pred EEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHH
Confidence 445557422 12348887 998889999997 45557787664321 1111111111
Q ss_pred -H---HHHHhh---c---CCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHhcc
Q 003473 530 -L---GDIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 579 (817)
Q Consensus 530 -l---~~LA~~---t---~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 579 (817)
. -.|... + ...|++--..+++-|...|...|+..|+.+|+. .+..+++.
T Consensus 228 v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 228 VFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1 112221 2 237888889999999999999999999999999 55555543
No 162
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.2e-10 Score=128.16 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=124.4
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------E----
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I---- 395 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf-------i---- 395 (817)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3467899999999999999886653 46777899999999999999999999763211 0
Q ss_pred E---e-echhh--HH---------Hhh---cc--------chHHHHHHHHHHH----hcCCeEEEEccccchhhccCCcc
Q 003473 396 S---C-SASEF--VE---------LYV---GM--------GASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF 445 (817)
Q Consensus 396 ~---i-s~s~~--~~---------~~v---G~--------~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~ 445 (817)
. + .|... +. ... +. ....+|++-+.+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0 11111 10 000 11 1244666655543 24577999999998742
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCc
Q 003473 446 RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA 525 (817)
Q Consensus 446 ~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~ 525 (817)
...|.||..++. ...+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++..++|..+... .
T Consensus 156 ---------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~- 216 (365)
T PRK07471 156 ---------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L- 216 (365)
T ss_pred ---------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-
Confidence 355788888874 33456777789999999988877 54 48999999999999888876421 1
Q ss_pred ccCCHHHHHhhcCCCCHHHHHHHH
Q 003473 526 KDIDLGDIASMTTGFTGADLANLV 549 (817)
Q Consensus 526 ~dvdl~~LA~~t~G~SgaDL~~Lv 549 (817)
.+..+..++..+.| ++....+++
T Consensus 217 ~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 217 PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 11122456666665 554444443
No 163
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.19 E-value=5.8e-11 Score=138.36 Aligned_cols=213 Identities=21% Similarity=0.290 Sum_probs=129.7
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHHH
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL 405 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~s~~~~~ 405 (817)
..+|+|++|...+.+.+.+.+..+.. .+..|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 36799999999998888887754322 3456999999999999999999865 4679999999866432
Q ss_pred -----hhccch--------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CCCC-
Q 003473 406 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS- 469 (817)
Q Consensus 406 -----~vG~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~- 469 (817)
..|... ..-..+|+.|.. ..|||||||.|....+ .-|-.+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q------------~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ------------TRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH------------HHHHHHHhcCcEEecCCC
Confidence 112100 012335555543 4899999999864432 12222333211 1111
Q ss_pred ---CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHH----HHHHHHHhc----CCCCCcccCCHH
Q 003473 470 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSK----KELPLAKDIDLG 531 (817)
Q Consensus 470 ---~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~----~ILk~~l~~----~~l~l~~dvdl~ 531 (817)
...+.+|++||..- . .+...|+|.. .+.+..|...+|. .++.+++.+ .+.++.++. +.
T Consensus 343 ~~~~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~ 418 (526)
T TIGR02329 343 EPVPVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQ 418 (526)
T ss_pred ceeeecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HH
Confidence 12468899998751 1 1122233331 4677888887775 244444443 223333332 23
Q ss_pred H-------HHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 532 D-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 532 ~-------LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
. |..+...-+-++|++++++++..+.......|+.+++.
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 3 55666556779999999999877642233567776654
No 164
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.19 E-value=4.9e-11 Score=139.04 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=128.0
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh-----------cCCcEEEee
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 398 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e-----------~gvpfi~is 398 (817)
.+|+|++|.+.+.+.+.+.+..+. ..+..|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 469999999999988888775432 23446999999999999999999876 467999999
Q ss_pred chhhHHH-----hhccc------h--HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc
Q 003473 399 ASEFVEL-----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 465 (817)
Q Consensus 399 ~s~~~~~-----~vG~~------~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd 465 (817)
|+.+.+. ..|.. + ..-..+|+.|.. ..||||||+.|....| ..|-.+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q------------~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ------------TRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH------------HHHHhhhhcCe
Confidence 9876432 11211 1 011235555543 3899999999864432 12222332211
Q ss_pred --CCCC----CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHH----HHHHHHHhc----CCCCC
Q 003473 466 --GFDS----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSK----KELPL 524 (817)
Q Consensus 466 --g~~~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~----~ILk~~l~~----~~l~l 524 (817)
.... ...+.+|++||.. |. .+...|+|.. .+.+..|...+|. .++.+++.+ .+.++
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 1111 2346899999875 22 2223344432 5677888887775 344555543 33344
Q ss_pred cccCC------HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHH
Q 003473 525 AKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKID 568 (817)
Q Consensus 525 ~~dvd------l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d 568 (817)
.+++- ++.|..+...-+-++|++++++++..+.......|+.++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~ 477 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQF 477 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHH
Confidence 43321 134455555557799999999988765322223444443
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.6e-10 Score=134.77 Aligned_cols=209 Identities=24% Similarity=0.330 Sum_probs=146.3
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCc
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVP 393 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvp 393 (817)
++....-.++-|+|.++..+.+.+++. .+..++-+|+|+||+|||.++..+|.+. +..
T Consensus 161 t~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~ 228 (786)
T COG0542 161 TELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKR 228 (786)
T ss_pred HHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCE
Confidence 344455678999999988777766653 2334567999999999999999999864 567
Q ss_pred EEEeechhhHH--HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCC
Q 003473 394 FISCSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 471 (817)
Q Consensus 394 fi~is~s~~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~ 471 (817)
+++.+.+.++. +|-|+.+.+++.+.+..++..+.||||||||.+.+..... +. .-..-|-|.-.+. +.
T Consensus 229 i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~---a~DAaNiLKPaLA----RG 298 (786)
T COG0542 229 IYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GG---AMDAANLLKPALA----RG 298 (786)
T ss_pred EEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---cc---ccchhhhhHHHHh----cC
Confidence 88888888875 6999999999999999998889999999999997553221 10 1112233333332 45
Q ss_pred cEEEEEEcCCCC-----CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC----CCCCcccCCHHHHHhh-----c
Q 003473 472 AVIVLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----T 537 (817)
Q Consensus 472 ~VIVIaATN~pd-----~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~-----t 537 (817)
.+-+|+||...+ .-|+||-| ||. .|.|.-|+.++-..||+-.-.+. ++.+.+++ +..-+.. +
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-l~aAv~LS~RYI~ 374 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-LVAAVTLSDRYIP 374 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-HHHHHHHHHhhcc
Confidence 688999885432 45999999 997 88999999999999998655432 23333221 2222222 2
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 003473 538 TGFTGADLANLVNEAALLAGR 558 (817)
Q Consensus 538 ~G~SgaDL~~Lv~eAal~A~r 558 (817)
.-|=+.-...++.+|+.....
T Consensus 375 dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 375 DRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred cCCCCchHHHHHHHHHHHHHh
Confidence 334444556788887765544
No 166
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.18 E-value=7.9e-10 Score=117.38 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=75.9
Q ss_pred EEEEEEcCC-------------CCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCC
Q 003473 473 VIVLGATNR-------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 539 (817)
Q Consensus 473 VIVIaATN~-------------pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 539 (817)
-+||.|||+ |.-+++.|+. |+ ..|..-+++.++.++|++......++.+.++ .++.++.....
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~ 401 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTS 401 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccc
Confidence 367778886 5566777775 43 2556667888999999999998888877655 47777776666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHH
Q 003473 540 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 576 (817)
Q Consensus 540 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 576 (817)
-|-+-..+++.-|.+.|...++..|..+|++++-+-.
T Consensus 402 tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 402 TSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred hhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 6667777788888899999999999999999876543
No 167
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=1.1e-09 Score=116.05 Aligned_cols=190 Identities=14% Similarity=0.210 Sum_probs=118.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCC-cEEE---e----echhhHHH---hhccc---h---H---HHHHHH-HHHHhcC
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFIS---C----SASEFVEL---YVGMG---A---S---RVRDLF-ARAKKEA 425 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gv-pfi~---i----s~s~~~~~---~vG~~---~---~---~vr~lF-~~A~~~a 425 (817)
..++|+||+|+|||++++.+++++.. .+.. + +..++... ..|.. . . .+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34889999999999999999998752 2221 1 11122211 11211 1 1 122222 2233566
Q ss_pred CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC---CCC----cccCCCCccceE
Q 003473 426 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLD----PALRRPGRFDRV 498 (817)
Q Consensus 426 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd---~LD----pALlRpGRFdr~ 498 (817)
+++|+|||+|.+... ....+..+..... .....+.|+.+ ..++ .+. ..+.+ |+...
T Consensus 124 ~~vliiDe~~~l~~~------------~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~ 186 (269)
T TIGR03015 124 RALLVVDEAQNLTPE------------LLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIAS 186 (269)
T ss_pred CeEEEEECcccCCHH------------HHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeee
Confidence 789999999987421 1223333322211 11222333333 2222 221 12333 67778
Q ss_pred EEeeCCCHHHHHHHHHHHHhcCCC----CCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHH
Q 003473 499 VMVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 499 I~V~~Pd~~eR~~ILk~~l~~~~l----~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 574 (817)
+.+++.+.++..+++...+...+. .+.++ .++.|.+.+.|. ++.|..+++.+...|..++...|+.+++.+++.
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~-~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEG-AFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHH-HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 899999999999999988865332 23333 477889999886 566999999999999999999999999999986
Q ss_pred H
Q 003473 575 R 575 (817)
Q Consensus 575 r 575 (817)
.
T Consensus 265 ~ 265 (269)
T TIGR03015 265 E 265 (269)
T ss_pred H
Confidence 5
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=6.5e-10 Score=131.61 Aligned_cols=257 Identities=12% Similarity=0.115 Sum_probs=143.0
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-ee---
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CS--- 398 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~-is--- 398 (817)
..+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++++|++++..++. .+
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 45667788999999999999988877655322 22334459999999999999999999998765432 11
Q ss_pred chhhH----------HH--hhccchHHHHHHHHHHHh----------cCCeEEEEccccchhhccCCccccccchHHHHH
Q 003473 399 ASEFV----------EL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 456 (817)
Q Consensus 399 ~s~~~----------~~--~vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 456 (817)
+.... +. ........+++++..+.. ....||||||||.+... . ...
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~ 214 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRA 214 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHH
Confidence 10000 00 001223445555555542 24569999999987532 1 123
Q ss_pred HHHHHh-hccCCCCCCcEEEEEEcC-CCC--------------CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcC
Q 003473 457 LNQLLT-EMDGFDSNSAVIVLGATN-RSD--------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 520 (817)
Q Consensus 457 Ln~LL~-emdg~~~~~~VIVIaATN-~pd--------------~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~ 520 (817)
+..+|. ... ....+.+|++++ .+. .|.++++...|. .+|.|.+.........|+..+...
T Consensus 215 lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 215 LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 444444 211 122333333332 111 134677743344 378999999999888888777654
Q ss_pred CCCCccc------CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-------hCCccccHHHHHHHHHHHhc--chhh-hh
Q 003473 521 ELPLAKD------IDLGDIASMTTGFTGADLANLVNEAALLAGR-------LNKVVVEKIDFIHAVERSIA--GIEK-KT 584 (817)
Q Consensus 521 ~l~l~~d------vdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r-------~~~~~It~~d~~~Al~rvi~--g~e~-k~ 584 (817)
......+ -.+..|+... .+|++.+++.-...+.+ .+...++..+...+..+... ..++ ..
T Consensus 291 ~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l 366 (637)
T TIGR00602 291 AKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEI 366 (637)
T ss_pred hhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHH
Confidence 3222111 2355566544 44888887766555432 22334555444444332210 0000 01
Q ss_pred hhhccchhhHHHhhhccceeee
Q 003473 585 AKLKGSEKAVVARHEAGHAVVG 606 (817)
Q Consensus 585 ~~ls~~ek~~vA~HEaGHAlv~ 606 (817)
..+...+.-+.++|-.|..+..
T Consensus 367 ~~~~~rd~sl~lfhalgkily~ 388 (637)
T TIGR00602 367 QALGGKDVSLFLFRALGKILYC 388 (637)
T ss_pred HhhccccchhHHHHHhChhhcc
Confidence 1123334456677777776653
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=4.1e-10 Score=123.23 Aligned_cols=170 Identities=16% Similarity=0.314 Sum_probs=116.7
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--------EEEeechh
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASE 401 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp--------fi~is~s~ 401 (817)
.+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+-+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 369999999999999887663 24667789999999999999999999976432 22222100
Q ss_pred hHHHhhccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEE
Q 003473 402 FVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 477 (817)
Q Consensus 402 ~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIa 477 (817)
. ...+...+|++.+.+.. ....|++||++|.+.. ...|.||..++. +..++++|.
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCeEEEE
Confidence 0 11123457777765532 2345999999998742 245788888884 345566666
Q ss_pred EcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCC
Q 003473 478 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 539 (817)
Q Consensus 478 ATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 539 (817)
+|+.++.|.|.+++ |. ..+.+..|+.++....+...+.. ++++ .++.++..+.|
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND----IKEE-EKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC----CCHH-HHHHHHHHcCC
Confidence 77788999999988 43 48999999999888777665421 1221 24456666655
No 170
>PHA02244 ATPase-like protein
Probab=99.14 E-value=1.2e-09 Score=121.22 Aligned_cols=124 Identities=26% Similarity=0.336 Sum_probs=81.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh--hc---cchHHHHHHHHHHHhcCCeEEEEccccchhhcc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--VG---MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 441 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~--vG---~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 441 (817)
.+|||+||||||||++|+++|..++.||+.++.. .+.+ .| ....-...-|-.|.. ..++|+|||++.+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH
Confidence 4599999999999999999999999999999842 2211 11 110111112333332 35699999999875332
Q ss_pred CCccccccchHHHHHHHHHHhh-----ccC-CCCCCcEEEEEEcCCC-----------CCCCcccCCCCccceEEEeeCC
Q 003473 442 DGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGATNRS-----------DVLDPALRRPGRFDRVVMVETP 504 (817)
Q Consensus 442 ~~~~~~~~~~e~~~~Ln~LL~e-----mdg-~~~~~~VIVIaATN~p-----------d~LDpALlRpGRFdr~I~V~~P 504 (817)
...|+.++.. .++ +..+.++.+|+|+|.+ ..|++|++. ||- .|.++.|
T Consensus 197 ------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 197 ------------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ------------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2334444431 111 1234678999999973 578999998 995 7999999
Q ss_pred CHHH
Q 003473 505 DKIG 508 (817)
Q Consensus 505 d~~e 508 (817)
+..+
T Consensus 262 ~~~E 265 (383)
T PHA02244 262 EKIE 265 (383)
T ss_pred cHHH
Confidence 8433
No 171
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.12 E-value=7.7e-11 Score=134.32 Aligned_cols=213 Identities=24% Similarity=0.357 Sum_probs=134.2
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
....+|+||+|..++..++.+.+.. .++.+..|||.|.+||||.++|+++.+.. +-||+.++|..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457899999999998888776643 34556689999999999999999998765 6799999998654
Q ss_pred HH-------------hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhh--ccCCC
Q 003473 404 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFD 468 (817)
Q Consensus 404 ~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mdg~~ 468 (817)
+. |.|....--..+|+.|... .||+|||..+...-|. -|-..|++ +....
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQa------------KLLRVLQEkei~rvG 373 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQA------------KLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHHH------------HHHHHHhhceEEecC
Confidence 42 2222111134566666554 8999999888643221 12222332 11111
Q ss_pred C----CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHHH----HHHHHHhc----CC--CC-Ccc
Q 003473 469 S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE--LP-LAK 526 (817)
Q Consensus 469 ~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~~----ILk~~l~~----~~--l~-l~~ 526 (817)
+ ...|.||||||+. |-. +..-|+|-. ++.+..|...+|.+ +..+++.+ .+ ++ +.+
T Consensus 374 ~t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~ 450 (560)
T COG3829 374 GTKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSP 450 (560)
T ss_pred CCCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCH
Confidence 1 2469999999985 222 222344432 66777788877752 33333332 21 11 333
Q ss_pred cCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 527 DIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 527 dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
++ +..|.+....-+-++|+|++..+...+. ....|+..|+.
T Consensus 451 ~a-~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp 491 (560)
T COG3829 451 DA-LALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLP 491 (560)
T ss_pred HH-HHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcc
Confidence 32 5556666655578999999999987553 33346665554
No 172
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.11 E-value=1.5e-10 Score=135.49 Aligned_cols=209 Identities=23% Similarity=0.321 Sum_probs=128.0
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
.+..+|++++|.+.+.+++.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4457899999999998888887765432 34469999999999999999998864 5799999998764
Q ss_pred HHh-----hccchH-------HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccC--CC-
Q 003473 404 ELY-----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD- 468 (817)
Q Consensus 404 ~~~-----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~- 468 (817)
+.. .|.... .....|+.| ...+|||||||.|....+ ..|+..++. +.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 111100 001123333 245999999999864422 223333321 11
Q ss_pred --C----CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHH----HHHHHHHHhc----CC--CCCc
Q 003473 469 --S----NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGR----EAILKVHVSK----KE--LPLA 525 (817)
Q Consensus 469 --~----~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR----~~ILk~~l~~----~~--l~l~ 525 (817)
. ...+.+|++|+.. +.. +...|+|.. .+.+..|...+| ..|+.+++.+ .+ ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1247889998764 111 222334421 445666666555 3445555542 11 2233
Q ss_pred ccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 526 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 526 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
++ .++.|..+...-+.++|+++++.|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 33 2556666665567899999999988665 34567777754
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.2e-09 Score=120.11 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=123.4
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----------------
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------------- 394 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf---------------- 394 (817)
.|+||+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|..+-+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999987753 45677899999999999999999998763321
Q ss_pred --EEeechhhHH------H---hhc--------cchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccch
Q 003473 395 --ISCSASEFVE------L---YVG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 451 (817)
Q Consensus 395 --i~is~s~~~~------~---~vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 451 (817)
+.+......+ . ..| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1111100000 0 000 112356666555532 2346999999998853
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHH
Q 003473 452 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 531 (817)
Q Consensus 452 e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~ 531 (817)
...|.||..|+... +.++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|+....... .+.+..
T Consensus 139 ---~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 34588888888654 33566677889999999998 53 4899999999999998887643211 112246
Q ss_pred HHHhhcCCCCHHHHHHHHH
Q 003473 532 DIASMTTGFTGADLANLVN 550 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~ 550 (817)
.++....| +++...++++
T Consensus 206 ~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHcCC-CHHHHHHHHH
Confidence 67777766 5555555544
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=7.5e-10 Score=125.66 Aligned_cols=155 Identities=26% Similarity=0.418 Sum_probs=91.9
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEee----ch
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 400 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~is----~s 400 (817)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 7788888777666544332 2457999999999999999999988742 122222 23
Q ss_pred hhHHHhh--ccch----HHHHHHHHHHHhc--CCeEEEEccccchhhcc-CCcccc-ccchHHHHHHHH--HHhh--ccC
Q 003473 401 EFVELYV--GMGA----SRVRDLFARAKKE--APSIIFIDEIDAVAKSR-DGRFRI-VSNDEREQTLNQ--LLTE--MDG 466 (817)
Q Consensus 401 ~~~~~~v--G~~~----~~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r-~~~~~~-~~~~e~~~~Ln~--LL~e--mdg 466 (817)
+|+..+. +.+- ..+.++...|+.. .|+|||||||+.-...+ -+.+.. ...+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443331 1111 2344556677653 58999999999854332 010000 001100000000 0011 123
Q ss_pred CCCCCcEEEEEEcCCCC----CCCcccCCCCccceEEEeeC
Q 003473 467 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 503 (817)
Q Consensus 467 ~~~~~~VIVIaATN~pd----~LDpALlRpGRFdr~I~V~~ 503 (817)
+....++.||||+|..| .+|.||+| ||. .|.+.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55567899999999987 89999999 985 455654
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=1.2e-09 Score=110.59 Aligned_cols=145 Identities=18% Similarity=0.266 Sum_probs=98.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------------------------EEEeechhhHHHhhccchHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 418 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp------------------------fi~is~s~~~~~~vG~~~~~vr~lF 418 (817)
.+.|..+||+||+|+|||++|++++.++.+. +..+.... ...+...++++.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHH
Confidence 3567789999999999999999999987432 11111100 012235667667
Q ss_pred HHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCc
Q 003473 419 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 494 (817)
Q Consensus 419 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 494 (817)
+.+.. ....||+|||+|.+... ..+.|+..|+... ...++|.+||.++.|.+++.+ |
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--h
Confidence 66654 23469999999988532 3467788887533 345566667777999999988 5
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCC
Q 003473 495 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 539 (817)
Q Consensus 495 Fdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 539 (817)
+ ..+.+.+|+.++..++++.+ + ++++ .+..++..+.|
T Consensus 147 ~-~~~~~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 147 C-QVLPFPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred c-EEeeCCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 5 48999999999998888775 2 2332 35666666655
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.09 E-value=1.3e-09 Score=126.18 Aligned_cols=210 Identities=24% Similarity=0.300 Sum_probs=129.3
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 391 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g------------------ 391 (817)
..|.++.|+..+++.+.- ......+++|+||||||||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhe--------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 478999999887765432 123345799999999999999999987542
Q ss_pred ----------CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHH
Q 003473 392 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 461 (817)
Q Consensus 392 ----------vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL 461 (817)
.||.....+.-....+|.+...-...+..|... +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 112111111111112333322223455665554 999999987643 2334444
Q ss_pred hhccCCC-----------CCCcEEEEEEcCCCC---------------------CCCcccCCCCccceEEEeeCCCHHH-
Q 003473 462 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 508 (817)
Q Consensus 462 ~emdg~~-----------~~~~VIVIaATN~pd---------------------~LDpALlRpGRFdr~I~V~~Pd~~e- 508 (817)
..|+.-. ...++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4442211 135689999999752 46778888 999999999885321
Q ss_pred ---------HHHHHHHHH-------hcCCCCCcccCCH--------------H--HHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 509 ---------REAILKVHV-------SKKELPLAKDIDL--------------G--DIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 509 ---------R~~ILk~~l-------~~~~l~l~~dvdl--------------~--~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
...|-+... ...+ .+...+.- . .-+....|+|.+....+++-|...|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111221100 0000 01111110 1 1122445789999999999999999
Q ss_pred HHhCCccccHHHHHHHHH
Q 003473 557 GRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 557 ~r~~~~~It~~d~~~Al~ 574 (817)
..++++.|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999985
No 177
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=4.2e-09 Score=122.81 Aligned_cols=209 Identities=22% Similarity=0.328 Sum_probs=133.1
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcC---hhHHhhh-------------------CCCCCCeEEEEcCCCCcHHH
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRS---PDKYIRL-------------------GARPPRGVLLVGLPGTGKTL 381 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~---p~~~~~l-------------------g~~~pkgVLL~GPPGTGKT~ 381 (817)
.++..+-.|.|+.|-+.+-..+...+....- .+++.++ +.++.+-+||+||||-|||+
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4566778899999999887766554433110 0011111 12233558899999999999
Q ss_pred HHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHh--------cCCeEEEEccccchhhccCCccccccchHH
Q 003473 382 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKK--------EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 453 (817)
Q Consensus 382 LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~--------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 453 (817)
||+.+|+++|..++.|++|+=.. +..++.-++.|-. ..|..|+|||||--.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 99999999999999999987432 3334444444432 468899999999532
Q ss_pred HHHHHHHHhhcc-------CCCC---------CC---cEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHH
Q 003473 454 EQTLNQLLTEMD-------GFDS---------NS---AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 514 (817)
Q Consensus 454 ~~~Ln~LL~emd-------g~~~---------~~---~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk 514 (817)
...++.++..+. |-.. +. .--|||.||.. --|||+----|...|.|.+|...-..+-|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 112233332222 1100 00 12466777753 456763222377899999999988888888
Q ss_pred HHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhC
Q 003473 515 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 515 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 560 (817)
..+.+.++..+.. .+..|+..| ..||++.+|.-...|.+..
T Consensus 479 ~IC~rE~mr~d~~-aL~~L~el~----~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 479 EICHRENMRADSK-ALNALCELT----QNDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHhhhcCCCCHH-HHHHHHHHh----cchHHHHHHHHHHHHHhcc
Confidence 8888877754322 244455544 4599999999888876543
No 178
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.08 E-value=1e-10 Score=120.42 Aligned_cols=119 Identities=28% Similarity=0.461 Sum_probs=68.7
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 390 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------------------- 390 (817)
.|+||+|++.+|..|.-.+. | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 38999999999998876443 2 3589999999999999999999743
Q ss_pred --------CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHh
Q 003473 391 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 462 (817)
Q Consensus 391 --------gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~ 462 (817)
..||....-+.-....+|.+....-..+..|.. .|||+||+-.+- ..+++.|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhcC---------------HHHHHHHHH
Confidence 124444333222222333322111112233332 399999997663 356777777
Q ss_pred hccCCC-----------CCCcEEEEEEcCC
Q 003473 463 EMDGFD-----------SNSAVIVLGATNR 481 (817)
Q Consensus 463 emdg~~-----------~~~~VIVIaATN~ 481 (817)
-|+.-. -..++++|+|+|.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 665321 1246899999985
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.08 E-value=3.8e-10 Score=131.49 Aligned_cols=198 Identities=22% Similarity=0.292 Sum_probs=123.1
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 405 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-- 405 (817)
++.+++|.....+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 68899999999988888776533 234579999999999999999998764 579999999876432
Q ss_pred ---hhccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CCC----C
Q 003473 406 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----S 469 (817)
Q Consensus 406 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~ 469 (817)
..|... ......|+.|. ...|||||||.|....+ .-|-.++..-. ... .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ------------AKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH------------HHHHHHHhcCCEeeCCCCcce
Confidence 112110 00112344443 34899999999864322 12222332211 011 1
Q ss_pred CCcEEEEEEcCCCC-------CCCcccCCCCccceEEEeeCCCHHHHHH----HHHHHHhc----CC---CCCcccCCHH
Q 003473 470 NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDIDLG 531 (817)
Q Consensus 470 ~~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~V~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dvdl~ 531 (817)
...+.+|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++++++.+ .+ ..+.++ .+.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~-a~~ 395 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA-AQA 395 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-HHH
Confidence 23678999998751 12222222 222 56688888887752 33333332 11 223333 256
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLAG 557 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A~ 557 (817)
.|..+...-+.++|+++++.|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 66667666688999999999998874
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.9e-10 Score=118.80 Aligned_cols=127 Identities=34% Similarity=0.513 Sum_probs=87.1
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCC--------CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-H
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGAR--------PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 405 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~--------~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~ 405 (817)
|+|++.+|+.|.=.|-. .|.++... .-.+|||.||.|||||+||+.+|+.+++||...++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 78999999877644422 23333221 2356999999999999999999999999999999998887 5
Q ss_pred hhccchHHH-HHHHHHHH----hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC
Q 003473 406 YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 467 (817)
Q Consensus 406 ~vG~~~~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 467 (817)
|+|+...++ ..++..|. +....||+|||||.+.++..+.. ...+-.-+.+-..||..|+|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~S-ITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCC-cccccCchHHHHHHHHHHcCc
Confidence 899876554 44444331 12345999999999998764331 111111234456677777764
No 181
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.08 E-value=4.3e-10 Score=131.41 Aligned_cols=210 Identities=20% Similarity=0.244 Sum_probs=124.5
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
...+|++++|.+....++.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999887777665543221 23459999999999999999996653 57999999987643
Q ss_pred H-----hhccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCC---
Q 003473 405 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGF--- 467 (817)
Q Consensus 405 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~--- 467 (817)
. ..|... .....+|+.|. ...|||||||.+....+ ..|-.++..- ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ------------AKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH------------HHHHHHHhcCCcccCCCC
Confidence 1 112111 11123455543 34899999999864332 2222333321 001
Q ss_pred -CCCCcEEEEEEcCCCC-------CCCcccCCCCccceEEEeeCCCHHHHHH----HHHHH----HhcCCC---CCcccC
Q 003473 468 -DSNSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVH----VSKKEL---PLAKDI 528 (817)
Q Consensus 468 -~~~~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~V~~Pd~~eR~~----ILk~~----l~~~~l---~l~~dv 528 (817)
.....+.||+||+.+- .+.+.|.. |+. .+.+..|...+|.+ ++..+ ..+.+. .+.++
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~- 409 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD- 409 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 1123578899887641 22333433 433 47788888877752 22333 333332 23333
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 003473 529 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 569 (817)
Q Consensus 529 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 569 (817)
.+..|..+...-+-++|++++..|+..+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2455555555456788999988887655 3345666554
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.07 E-value=1.7e-10 Score=110.70 Aligned_cols=113 Identities=33% Similarity=0.375 Sum_probs=69.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--HhhccchHH------HHHHHHHHHhcCCeEEEEccccchhh
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR------VRDLFARAKKEAPSIIFIDEIDAVAK 439 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~--~~vG~~~~~------vr~lF~~A~~~aP~ILfIDEIDaL~~ 439 (817)
+|||+||||||||++|+.+|..++.+++.++++...+ ...|.-.-. ....+.++. ..++|++||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999998876433 112211000 000000111 147899999999753
Q ss_pred ccCCccccccchHHHHHHHHHHhhccCC-------C-CCC------cEEEEEEcCCCC----CCCcccCCCCcc
Q 003473 440 SRDGRFRIVSNDEREQTLNQLLTEMDGF-------D-SNS------AVIVLGATNRSD----VLDPALRRPGRF 495 (817)
Q Consensus 440 ~r~~~~~~~~~~e~~~~Ln~LL~emdg~-------~-~~~------~VIVIaATN~pd----~LDpALlRpGRF 495 (817)
.+....++.++..-.-. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 22233344444431100 0 011 489999999988 89999998 76
No 183
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=5e-10 Score=133.85 Aligned_cols=213 Identities=21% Similarity=0.294 Sum_probs=128.1
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 404 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~- 404 (817)
..+|++++|.+.+..++.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999998887777665432 223459999999999999999998764 57999999986532
Q ss_pred ----Hhhccc----hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCCCC----C
Q 003473 405 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS----N 470 (817)
Q Consensus 405 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~~----~ 470 (817)
...|.. .......|+.| ...+|||||||.+....+ ..|-.+|..- ..... .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q------------~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ------------SALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH------------HHHHHHHhcCcEEeCCCCceEE
Confidence 122211 00001123333 345999999999864432 1222233210 00011 1
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHH----HHHHHHHhc----CC--CCCcccCCHHHH
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSK----KE--LPLAKDIDLGDI 533 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~----~ILk~~l~~----~~--l~l~~dvdl~~L 533 (817)
..+.+|+|||.. + ..+...|+|.. .+.+..|...+|. .++..++.+ .+ +.+.++ .+..|
T Consensus 456 ~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~~~L 531 (638)
T PRK11388 456 VDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALARL 531 (638)
T ss_pred eeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HHHHH
Confidence 257899999864 1 12222234321 5678888888884 234444432 11 223333 35666
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 534 ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 534 A~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
..+...-+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 67775567899999999887654 34467777665443
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=99.06 E-value=1.6e-09 Score=131.43 Aligned_cols=171 Identities=21% Similarity=0.226 Sum_probs=127.2
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC------CeEEEEcccc
Q 003473 369 VLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEID 435 (817)
Q Consensus 369 VLL~G--PPGTGKT~LAkALA~e~-----gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEID 435 (817)
-+..| |++.|||++|+++|+++ +.+++.+++++.. +...+|++.+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46668 99999999999999997 5689999998752 2346777776654332 2599999999
Q ss_pred chhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHH
Q 003473 436 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 515 (817)
Q Consensus 436 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~ 515 (817)
.|... ..+.|+..|+.+. ..+.+|++||.+..+.+++++ |+ ..+.|++|+.++....|+.
T Consensus 641 ~Lt~~---------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQD---------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCHH---------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 98632 3477888888543 467888899999999999988 63 5889999999999999998
Q ss_pred HHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003473 516 HVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 516 ~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 572 (817)
.+.+.++.++++ .+..++..+.| +.+...++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 888777766554 58888888887 556666666554422 134666655443
No 185
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=2e-09 Score=127.38 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=125.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccchHHHHHHHHHHH---------hcCCeEEEEcccc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAK---------KEAPSIIFIDEID 435 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g--vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~---------~~aP~ILfIDEID 435 (817)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. .+...+.... .....+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999874 4798887643333333331 1111111000 0122499999999
Q ss_pred chhhccCCccccccchHHHHHHHHHHhhccCCC-----------CCCcEEEEEEcCCCC---CCCcccCCCCccceEEEe
Q 003473 436 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 436 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~pd---~LDpALlRpGRFdr~I~V 501 (817)
.+... +.+.|+..|+.-. ....+.||||+|..+ .|.++|+. ||+.+|.+
T Consensus 95 rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 98643 3345555554211 124688999999765 78899998 99988877
Q ss_pred e-CCCHHHHHHHHHHHHhcC-----------------------CCCCcccCCHHHHHhhc--CCCC-HHHHHHHHHHHHH
Q 003473 502 E-TPDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASMT--TGFT-GADLANLVNEAAL 554 (817)
Q Consensus 502 ~-~Pd~~eR~~ILk~~l~~~-----------------------~l~l~~dvdl~~LA~~t--~G~S-gaDL~~Lv~eAal 554 (817)
. .|+.++|.+|++.++... .+.+++++ ++.++..+ .|.+ .+....+++-|..
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ArA 236 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRAAKA 236 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 6 467788899988765211 11122221 22332221 2443 4555677888889
Q ss_pred HHHHhCCccccHHHHHHHHHHHhc
Q 003473 555 LAGRLNKVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 555 ~A~r~~~~~It~~d~~~Al~rvi~ 578 (817)
.|..+++..|+.+|+..|+.-++.
T Consensus 237 ~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 237 HAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999977663
No 186
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.06 E-value=7.1e-10 Score=122.34 Aligned_cols=196 Identities=22% Similarity=0.255 Sum_probs=119.7
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH---
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE--- 404 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~--- 404 (817)
-|++++|.+.....+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999999888887766543 234569999999999999999997654 57999999987632
Q ss_pred --Hhhccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC-------
Q 003473 405 --LYVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 468 (817)
Q Consensus 405 --~~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~------- 468 (817)
...|... ......|+.|. ...|||||||.|....+ ..|..++..-. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q------------~~L~~~l~~~~-~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ------------EKLLRVIEYGE-LERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH------------HHHHHHHhcCc-EEeCCCCce
Confidence 1112110 01122344433 35899999999864322 22223332211 11
Q ss_pred CCCcEEEEEEcCCC-------CCCCcccCCCCccceEEEeeCCCHHHHH----HHHHHHHh----cCCCC----CcccCC
Q 003473 469 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVS----KKELP----LAKDID 529 (817)
Q Consensus 469 ~~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~V~~Pd~~eR~----~ILk~~l~----~~~l~----l~~dvd 529 (817)
....+.||++|+.. ..+.+.|.. ||. .+.+..|...+|. .++.+++. +.+.+ ++++ .
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~-a 213 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER-A 213 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH-H
Confidence 12358889988764 234445544 453 4567778877774 34444432 22222 2222 2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 530 LGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 530 l~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
+..|..+..--+-++|+++++.|+..+
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 455666665557799999999887654
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.6e-09 Score=117.50 Aligned_cols=146 Identities=23% Similarity=0.326 Sum_probs=98.3
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------------------
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--------------------- 391 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g--------------------- 391 (817)
++++|.+++...+...+.. ..+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3677888887777665542 124555799999999999999999999886
Q ss_pred ---CcEEEeechhhHHHhhccchHHHHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc
Q 003473 392 ---VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 464 (817)
Q Consensus 392 ---vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em 464 (817)
-.++.++.++-... ......++++-+..... ...||+|||+|.+.. ...|.++..|
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~---------------~A~nallk~l 133 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE---------------DAANALLKTL 133 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHh
Confidence 34555555543221 11234455554444322 346999999999864 3457888888
Q ss_pred cCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHH
Q 003473 465 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 510 (817)
Q Consensus 465 dg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~ 510 (817)
+.. ..+..+|.+||.++.+-+.+++ |. ..+.|.+|+.....
T Consensus 134 Eep--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i 174 (325)
T COG0470 134 EEP--PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAI 174 (325)
T ss_pred ccC--CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHH
Confidence 744 3556788889999999888887 42 36777765544433
No 188
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1e-09 Score=118.60 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=63.0
Q ss_pred eEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC--------CCCcEEEEEEc----CCCCCCCcccCCCCc
Q 003473 427 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGR 494 (817)
Q Consensus 427 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~--------~~~~VIVIaAT----N~pd~LDpALlRpGR 494 (817)
.||||||||.++.+.+.+ +.+-.++.+-..||-.++|-. ....+++||+- ..|++|-|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999999765421 224445666677887777642 24578999887 56888889986 69
Q ss_pred cceEEEeeCCCHHHHHHHHH
Q 003473 495 FDRVVMVETPDKIGREAILK 514 (817)
Q Consensus 495 Fdr~I~V~~Pd~~eR~~ILk 514 (817)
|.-.|++...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999887774
No 189
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=3.5e-10 Score=126.80 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=127.5
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhH
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 403 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e----~gvpfi~is~s~~~ 403 (817)
....+++++|.+...+++.+-+..+ .+....||++|++||||+++|++|... .+.||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3457999999999988888776552 233456999999999999999999643 46799999999876
Q ss_pred HH-------------hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC---
Q 003473 404 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--- 467 (817)
Q Consensus 404 ~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~--- 467 (817)
+. |.| ....-..+|++|... +||+|||+.+...-+ ..|+..||.-
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~ 203 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYR 203 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceE
Confidence 52 222 223344567766554 999999999865322 2344444421
Q ss_pred ------CCCCcEEEEEEcCCC--CCCCc--ccCCCCccceEEEeeCCCHHHHH----HH----HHHHHhcCCCCCcccC-
Q 003473 468 ------DSNSAVIVLGATNRS--DVLDP--ALRRPGRFDRVVMVETPDKIGRE----AI----LKVHVSKKELPLAKDI- 528 (817)
Q Consensus 468 ------~~~~~VIVIaATN~p--d~LDp--ALlRpGRFdr~I~V~~Pd~~eR~----~I----Lk~~l~~~~l~l~~dv- 528 (817)
.....|.+|+|||.. +.+-. .+.+. |+ .+.|..|+..+|. .+ ++.++++.+.++..+.
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 123568999999753 22222 34331 22 4567778877774 23 3444455555544433
Q ss_pred -CHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 003473 529 -DLGDIASMTTGFTGADLANLVNEAALLAG 557 (817)
Q Consensus 529 -dl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 557 (817)
.+..+-.+..--+-++|+|+|..++..+.
T Consensus 281 ~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 281 EALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 23344444433377999999999998874
No 190
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.04 E-value=6.3e-10 Score=122.93 Aligned_cols=193 Identities=21% Similarity=0.238 Sum_probs=114.6
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----h
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 406 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-----~ 406 (817)
++|...+.+.+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777777766665432 234569999999999999999997654 579999999865321 1
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CC----CCCCcE
Q 003473 407 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GF----DSNSAV 473 (817)
Q Consensus 407 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~----~~~~~V 473 (817)
.|... .....+|+.|. ..+|||||||.|....+ ..|-.++..-. .. .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ------------EKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH------------HHHHHHHHcCcEEecCCCceeccce
Confidence 12110 01122344443 45999999999864322 12222332211 00 112458
Q ss_pred EEEEEcCCC-------CCCCcccCCCCccceEEEeeCCCHHHHH----HHHHHHHhc----CCC----CCcccCCHHHHH
Q 003473 474 IVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KEL----PLAKDIDLGDIA 534 (817)
Q Consensus 474 IVIaATN~p-------d~LDpALlRpGRFdr~I~V~~Pd~~eR~----~ILk~~l~~----~~l----~l~~dvdl~~LA 534 (817)
.+|++||.. ..+.+.|.. ||. .+.+..|...+|. .++.+++.+ .+. .+.++ .+..|.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~~L~ 211 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-AREQLL 211 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHHHHH
Confidence 899999764 123344443 443 4567788887774 333443332 222 23333 255666
Q ss_pred hhcCCCCHHHHHHHHHHHHHHH
Q 003473 535 SMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 535 ~~t~G~SgaDL~~Lv~eAal~A 556 (817)
.+...-+.++|+++++.|+..+
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC
Confidence 6665557799999999888765
No 191
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.9e-10 Score=128.27 Aligned_cols=212 Identities=23% Similarity=0.295 Sum_probs=123.8
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 391 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g----------------- 391 (817)
...|.||.|++.+|+.|..... ..+|+||+||||||||++|+-+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4589999999999999876543 345699999999999999999876431
Q ss_pred ------------CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHH
Q 003473 392 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 459 (817)
Q Consensus 392 ------------vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~ 459 (817)
.||..-.-+.-....+|.+...--.-...| + -.||||||+-.+- +++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA--H-~GVLFLDElpef~---------------~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA--H-NGVLFLDELPEFK---------------RSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee--c-CCEEEeeccchhh---------------HHHHHH
Confidence 112111111001111222100000001111 1 2399999986542 467888
Q ss_pred HHhhccCCC-----------CCCcEEEEEEcCCC-----------------------CCCCcccCCCCccceEEEeeCCC
Q 003473 460 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 505 (817)
Q Consensus 460 LL~emdg~~-----------~~~~VIVIaATN~p-----------------------d~LDpALlRpGRFdr~I~V~~Pd 505 (817)
|.+-|+.-. -..++.+|+|+|.. ..|...|++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 887776421 12457888888852 134445556 999999999877
Q ss_pred HHHHH--------------HHHHHH----HhcCCCCCcccC----------------CHHHHHhhcCCCCHHHHHHHHHH
Q 003473 506 KIGRE--------------AILKVH----VSKKELPLAKDI----------------DLGDIASMTTGFTGADLANLVNE 551 (817)
Q Consensus 506 ~~eR~--------------~ILk~~----l~~~~l~l~~dv----------------dl~~LA~~t~G~SgaDL~~Lv~e 551 (817)
..++. .+++.+ .+...+.....+ ++-..+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43331 111111 111111001111 12222334456777888888888
Q ss_pred HHHHHHHhCCccccHHHHHHHHH
Q 003473 552 AALLAGRLNKVVVEKIDFIHAVE 574 (817)
Q Consensus 552 Aal~A~r~~~~~It~~d~~~Al~ 574 (817)
|.-+|--++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888888888888888888874
No 192
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.03 E-value=1.7e-09 Score=130.43 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=122.8
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 405 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~ 405 (817)
..+|++++|...+.+.+.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35789999999999988877765432 23469999999999999999998754 679999999865321
Q ss_pred -----hhccc-------hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCC----
Q 003473 406 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGF---- 467 (817)
Q Consensus 406 -----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~---- 467 (817)
..|.. .......|+.|. ..+|||||||.+....+ .-|-.++..- ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q------------~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ------------PKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH------------HHHHHHHHhCCEEeCCCCC
Confidence 12210 011123444443 45999999999864322 1222223221 101
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHHH----HHHHHHhc----CCCC---CcccCC
Q 003473 468 DSNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KELP---LAKDID 529 (817)
Q Consensus 468 ~~~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~~----ILk~~l~~----~~l~---l~~dvd 529 (817)
....++.+|++|+..- . .+...|+|.. .+.+..|...+|.+ +++.++.+ .+.+ ++++ .
T Consensus 507 ~~~~~~RiI~~t~~~l--~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~-a 582 (686)
T PRK15429 507 IIQTDVRLIAATNRDL--K-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE-T 582 (686)
T ss_pred cccceEEEEEeCCCCH--H-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH-H
Confidence 1124688999998751 1 1111223322 56788888888853 34444332 2222 2333 3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 530 LGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 530 l~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
++.|.....--+-++|+++++.|+..+
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 566667766667899999999998765
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.01 E-value=1.1e-09 Score=113.29 Aligned_cols=205 Identities=22% Similarity=0.281 Sum_probs=126.5
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-C----CcEEEe
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E----VPFISC 397 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-g----vpfi~i 397 (817)
..+.+++..+.|++|.++..+.|+-+... +..| +++|.||||||||+-+.++|.++ | --+...
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 35778889999999999999998877654 2333 59999999999999999999986 3 123445
Q ss_pred echhhHHHhhccchHHHH---HHHHHHHhcC-C---eEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003473 398 SASEFVELYVGMGASRVR---DLFARAKKEA-P---SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 470 (817)
Q Consensus 398 s~s~~~~~~vG~~~~~vr---~lF~~A~~~a-P---~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 470 (817)
++|+= .+-.-+| ..|.+-+-.- | .||++||.|++.... .| .|-..|+=+...
T Consensus 85 NASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA------------QQ---AlRRtMEiyS~t 143 (333)
T KOG0991|consen 85 NASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA------------QQ---ALRRTMEIYSNT 143 (333)
T ss_pred cCccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH------------HH---HHHHHHHHHccc
Confidence 55542 2223333 3444444322 2 499999999986322 12 222334433433
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHH
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 550 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 550 (817)
. .+..++|..+.+-+.+.+ |.. .+.+...+..+...-|....+..+++..++ -++.+.-...| |+++.+|
T Consensus 144 t--RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 144 T--RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred c--hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHH
Confidence 3 566688888877777766 322 344445555555444444455556666555 36666655555 7777777
Q ss_pred HHHHHHHHhCCccccHHHHHHH
Q 003473 551 EAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 551 eAal~A~r~~~~~It~~d~~~A 572 (817)
... |...+-..|+.+.+...
T Consensus 214 nLQ--st~~g~g~Vn~enVfKv 233 (333)
T KOG0991|consen 214 NLQ--STVNGFGLVNQENVFKV 233 (333)
T ss_pred HHH--HHhccccccchhhhhhc
Confidence 543 33445556666554433
No 194
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.99 E-value=1.1e-08 Score=109.19 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=72.6
Q ss_pred CCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 003473 482 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 561 (817)
Q Consensus 482 pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 561 (817)
|.-++-.|+. |. ..|...+++.++.++||+..+...++.+.++. ++.|......-|-+-..+++..|.+.+.+++.
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~ 414 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATSLRYAIHLITAASLVCLKRKG 414 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 5667767765 43 36677788999999999999988877776663 66666666666777888999999999999999
Q ss_pred ccccHHHHHHHHHHHh
Q 003473 562 VVVEKIDFIHAVERSI 577 (817)
Q Consensus 562 ~~It~~d~~~Al~rvi 577 (817)
..++.+|+..+..-.+
T Consensus 415 ~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 KVVEVDDIERVYRLFL 430 (454)
T ss_pred ceeehhHHHHHHHHHh
Confidence 9999999999886443
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=5.1e-09 Score=115.77 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=106.8
Q ss_pred ccccccC-chHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-------EEee-chh
Q 003473 331 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS-ASE 401 (817)
Q Consensus 331 tf~DV~G-~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf-------i~is-~s~ 401 (817)
.|++|+| ++.+++.|+..+.. .+.|..+||+||+|+|||++|+++|+.+-++- -.|. |..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 88899988877642 46777899999999999999999999864321 0110 000
Q ss_pred hHH--------H-hhc--cchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccC
Q 003473 402 FVE--------L-YVG--MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 466 (817)
Q Consensus 402 ~~~--------~-~vG--~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg 466 (817)
+.. . ..| .....+|++.+.+.. ....|++|||+|.+.. ...|.||..|+.
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHHHHhcC
Confidence 000 0 001 123466776665542 2345999999998853 345889999984
Q ss_pred CCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHH
Q 003473 467 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 515 (817)
Q Consensus 467 ~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~ 515 (817)
+...+++|.+|+.+..|.|++++ |. ..+.+.+|+.++..++|+.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 34566777788888899999988 53 4889999999887766653
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.95 E-value=1.2e-08 Score=113.25 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=63.4
Q ss_pred cc-cccCchHhHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEeec---
Q 003473 332 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 399 (817)
Q Consensus 332 f~-DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~is~--- 399 (817)
|+ |++|++++++++.+ +++... .|. ...+.++|+||||||||+||++||+.++. |++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 66 99999999776554 444332 122 23467899999999999999999999977 9999998
Q ss_pred -hhhHHHhhccchHHHHHHHHHH
Q 003473 400 -SEFVELYVGMGASRVRDLFARA 421 (817)
Q Consensus 400 -s~~~~~~vG~~~~~vr~lF~~A 421 (817)
+.+.+..++.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7777777777777777766544
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.95 E-value=1.3e-09 Score=109.87 Aligned_cols=112 Identities=31% Similarity=0.353 Sum_probs=74.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeechhhHHHhhccchHHHHHHHHHH----HhcCCeEEEEccccch
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAV 437 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gv----pfi~is~s~~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL 437 (817)
-..+||+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 346899999999999999999999997 9999999998761 11112222222211 0111129999999999
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCC---------CCCcEEEEEEcCCCC
Q 003473 438 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 483 (817)
Q Consensus 438 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~~~~VIVIaATN~pd 483 (817)
.+... ...+-....+.+.||..||+-. .-.+++||+|+|.-.
T Consensus 81 ~~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 87522 2344455667777888776321 125689999999753
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=8.4e-09 Score=114.01 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=96.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee-chhhHH--------Hh-----hccchHHHHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS-ASEFVE--------LY-----VGMGASRVRDLFARA 421 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~is-~s~~~~--------~~-----vG~~~~~vr~lF~~A 421 (817)
.+.|..+||+||+|+|||++|+++|+.+.+. +-.|. |..+.. .. ..-+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999999987542 11110 100000 00 012346778777666
Q ss_pred Hh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccce
Q 003473 422 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 497 (817)
Q Consensus 422 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 497 (817)
.. ....|++|||+|.+.. ...|.||..|+. +..++++|.+|+.++.|.|.+++ |..
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred hhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 43 2345999999999853 355889999984 34578888999999999999998 643
Q ss_pred EEEeeCCCHHHHHHHHHHHH
Q 003473 498 VVMVETPDKIGREAILKVHV 517 (817)
Q Consensus 498 ~I~V~~Pd~~eR~~ILk~~l 517 (817)
.+.|.+|+.++..+.|....
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhc
Confidence 68999999998888877653
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.1e-09 Score=117.24 Aligned_cols=156 Identities=24% Similarity=0.389 Sum_probs=109.2
Q ss_pred HHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHhhccchHHHHHHHHHHHhcC
Q 003473 347 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEA 425 (817)
Q Consensus 347 eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~i-s~s~~~~~~vG~~~~~vr~lF~~A~~~a 425 (817)
.+|...+++++ .+-..+||.||||+|||.||..+|...+.||+.+ |..+++.+.....-..++..|+.|.+..
T Consensus 525 llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 525 LLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 34444555543 4456799999999999999999999999999975 5545543332333356899999999998
Q ss_pred CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC-CcEEEEEEcCCCCCCC-cccCCCCccceEEEeeC
Q 003473 426 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLD-PALRRPGRFDRVVMVET 503 (817)
Q Consensus 426 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LD-pALlRpGRFdr~I~V~~ 503 (817)
-+||++|+|+.|..- ...+....+-++..|+..+....+. .+.+|++||.+.+.|. -.++. .|+-.+.|+.
T Consensus 599 lsiivvDdiErLiD~-----vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpn 671 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDY-----VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPN 671 (744)
T ss_pred ceEEEEcchhhhhcc-----cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCc
Confidence 899999999998632 2233445566777777777766554 3578888888765553 23344 7888888886
Q ss_pred CCH-HHHHHHHHH
Q 003473 504 PDK-IGREAILKV 515 (817)
Q Consensus 504 Pd~-~eR~~ILk~ 515 (817)
... ++..+++..
T Consensus 672 l~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 672 LTTGEQLLEVLEE 684 (744)
T ss_pred cCchHHHHHHHHH
Confidence 654 455544443
No 200
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.89 E-value=2.9e-09 Score=120.29 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=128.0
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
+...+.+|+|...+..++.+.|+.... ....|||.|.+||||-.+||+|.... +.||+.++|+.+-+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 367789999999999999988876443 34579999999999999999998765 68999999987755
Q ss_pred Hhhc-cchHHHHHHHHHHHhcC--------CeEEEEccccchhhccCCccccccchHHHHHHHHHHhh--ccCCCCC---
Q 003473 405 LYVG-MGASRVRDLFARAKKEA--------PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDSN--- 470 (817)
Q Consensus 405 ~~vG-~~~~~vr~lF~~A~~~a--------P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e--mdg~~~~--- 470 (817)
.... +--...+..|.-|.... -..||+|||..|.-.-|.. |-..|++ ++....+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaK------------LLRvLQegEieRvG~~r~i 355 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAK------------LLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHH------------HHHHHhhcceeecCCCcee
Confidence 3110 00111222333332221 2389999998886443321 1222222 3333222
Q ss_pred -CcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHHH----HHHHHHhc----CC---CCCcccCCHH
Q 003473 471 -SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDIDLG 531 (817)
Q Consensus 471 -~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dvdl~ 531 (817)
-.|.||||||+. |-.++ +.|+|-. ++.+..|...+|.+ +.++++.+ .+ +.++++ .++
T Consensus 356 kVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~-Al~ 431 (550)
T COG3604 356 KVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE-ALE 431 (550)
T ss_pred EEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-HHH
Confidence 358999999984 32222 3355531 55666788887752 22333322 12 223333 256
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
.|..+..--+.++|+++|++|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 6666665557799999999999988
No 201
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.89 E-value=6.2e-09 Score=118.72 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=128.6
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 405 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~- 405 (817)
..+.+++|...+.+++.+.+..+... .-.|||+|++||||-++|++|.... +-||+.++|..+-+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 46789999999999999988775543 3469999999999999999998765 569999999765432
Q ss_pred ----hhccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc-----CCCC
Q 003473 406 ----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GFDS 469 (817)
Q Consensus 406 ----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g~~~ 469 (817)
..|... .+-...|+.|... .||||||..+...-| ..||..+. ....
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecCC
Confidence 222111 1122356665444 999999998864332 22333322 1211
Q ss_pred ----CCcEEEEEEcCCCCCCCcccCCCCccc-------eEEEeeCCCHHHHHH----HHHHHH----hcCCCCCcccCCH
Q 003473 470 ----NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHV----SKKELPLAKDIDL 530 (817)
Q Consensus 470 ----~~~VIVIaATN~pd~LDpALlRpGRFd-------r~I~V~~Pd~~eR~~----ILk~~l----~~~~l~l~~dvdl 530 (817)
+-.|.||+|||+. |.. ....|+|- .++.+..|...+|.+ ++.+++ .+.+.+ ...++-
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~~-~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LEE-EVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcC--HHH-HHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCH
Confidence 2368999999975 222 12234443 277888899988863 333333 333322 233444
Q ss_pred HHH---HhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 003473 531 GDI---ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 569 (817)
Q Consensus 531 ~~L---A~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 569 (817)
+.+ ..+..--+.++|+|++..++..+ ....|+.+++
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 444 44443335588888888887766 3344555443
No 202
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.88 E-value=1.4e-08 Score=123.01 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=90.4
Q ss_pred cccCchHhHHHHHHHHHHhcChhH-----------HhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEE
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI 395 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~-----------~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi 395 (817)
.|.|.+.+|..|.- ..+....+ |.....+...+|||+|+||||||.+|++++.-. |.++.
T Consensus 451 ~I~G~e~vK~ailL--~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLLC--QLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHHH--HHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 57888888876632 22221111 000123455579999999999999999999854 24555
Q ss_pred EeechhhHHHh-hccchHHH-HHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC------
Q 003473 396 SCSASEFVELY-VGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 467 (817)
Q Consensus 396 ~is~s~~~~~~-vG~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~------ 467 (817)
.+.+..+.... ...+.-.+ ...+..| ...+++|||+|.+.... . ..|+..|+.-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms~~~------------Q---~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCHNES------------R---LSLYEVMEQQTVTIAK 590 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCCHHH------------H---HHHHHHHhCCEEEEec
Confidence 54444332100 00010000 0011112 23499999999985332 1 2333333321
Q ss_pred -----CCCCcEEEEEEcCCCC-------------CCCcccCCCCccceEEE-eeCCCHHHHHHHHHH
Q 003473 468 -----DSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVM-VETPDKIGREAILKV 515 (817)
Q Consensus 468 -----~~~~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~-V~~Pd~~eR~~ILk~ 515 (817)
.-+.++.||||+|... .|+++|++ |||..+. ++.|+.+.-..|..+
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 1245789999999742 46799999 9998764 556776554444333
No 203
>PRK08116 hypothetical protein; Validated
Probab=98.85 E-value=1.5e-08 Score=109.11 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhc----cchHHHHHHHHHHHhcCCeEEEEccccch
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG----MGASRVRDLFARAKKEAPSIIFIDEIDAV 437 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 437 (817)
.+.|++|+||||||||+||.|+|+++ +.+++.++.+++...+.. .......++++... . ..+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-~-~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-N-ADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-C-CCEEEEecccCC
Confidence 34689999999999999999999985 789999999887764322 11112223333332 2 349999999652
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-CC----CCcccCCCCcc---ceEEEeeCCCH
Q 003473 438 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 506 (817)
Q Consensus 438 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~----LDpALlRpGRF---dr~I~V~~Pd~ 506 (817)
. ..+.....+..++... .. .+..+|.|||.+ +. ++.++.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~~~l~~iin~r---~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAREKVYNIIDSR---YR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1223333344444332 11 223466688865 22 4556655 43 23456666665
No 204
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=7e-09 Score=118.32 Aligned_cols=207 Identities=19% Similarity=0.258 Sum_probs=121.3
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh-
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 406 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~- 406 (817)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888888777766554332 223469999999999999999998765 5799999998764321
Q ss_pred ----hccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCCC----C
Q 003473 407 ----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFD----S 469 (817)
Q Consensus 407 ----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~----~ 469 (817)
.|... .....+|+.| ...+|||||||.|....+ ..|-.++..- .... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q------------~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ------------AKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH------------HHHHHHHhhCeEEeCCCCcee
Confidence 11100 0011122222 345999999999864322 1222233221 0001 1
Q ss_pred CCcEEEEEEcCCC-------CCCCcccCCCCccceEEEeeCCCHHHHHH----HHHHHHhc----CCC---CCcccCCHH
Q 003473 470 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 531 (817)
Q Consensus 470 ~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~V~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dvdl~ 531 (817)
...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD-ALR 347 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-HHH
Confidence 2357888898765 223333322 332 46777888887764 34444332 121 23332 356
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 569 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 569 (817)
.|..+...-+.++|+++++.|+..+. ...|+.+++
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 66666655678999999999887652 345555443
No 205
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.78 E-value=5.8e-08 Score=115.48 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=64.8
Q ss_pred CcEEEEEEcCCC--CCCCcccCCCCccc---eEEEeeC--CC-HHHHHHHHHHHHhcC----CC-CCcccCCHHHHHh--
Q 003473 471 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--PD-KIGREAILKVHVSKK----EL-PLAKDIDLGDIAS-- 535 (817)
Q Consensus 471 ~~VIVIaATN~p--d~LDpALlRpGRFd---r~I~V~~--Pd-~~eR~~ILk~~l~~~----~l-~l~~dvdl~~LA~-- 535 (817)
..+.||+++|+. ..+||+|.. ||. ..+.++. ++ .+.+..+++...+.. .. +++++. +..|.+
T Consensus 276 ~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~ 352 (637)
T PRK13765 276 CDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREA 352 (637)
T ss_pred eeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHH
Confidence 357899999885 567899987 775 4454442 22 455555555433221 11 222221 222222
Q ss_pred -hcCC------CCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 536 -MTTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 536 -~t~G------~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
+..| +.-++|.+++++|...|..+++..|+.+|+.+|+.+
T Consensus 353 ~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 353 KRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 1122 346899999999999999999999999999999865
No 206
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.78 E-value=8.6e-09 Score=103.54 Aligned_cols=123 Identities=28% Similarity=0.406 Sum_probs=76.0
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-----h
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 406 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-----~ 406 (817)
++|.+.+..++.+.+..+. ..+..|||+|++||||+++|+++.+.. +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5788888777777665432 334679999999999999999998865 579999999876432 2
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CCCC----CCcE
Q 003473 407 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFDS----NSAV 473 (817)
Q Consensus 407 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~~----~~~V 473 (817)
.|... .....+|++|... +||||||+.|...-| .-|..++..-. .... ...+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q------------~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ------------AKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH------------HHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH------------HHHHHHHhhchhccccccccccccc
Confidence 33211 1123677777665 999999999865432 22333333211 1111 2368
Q ss_pred EEEEEcCCC
Q 003473 474 IVLGATNRS 482 (817)
Q Consensus 474 IVIaATN~p 482 (817)
.||++|+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999864
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.8e-08 Score=109.26 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=96.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE---Eeechhh-----HH-------Hhh-------------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSASEF-----VE-------LYV------------------- 407 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi---~is~s~~-----~~-------~~v------------------- 407 (817)
..+.|.++||+||+|+||+++|+++|+.+.+..- .-.|... +. .++
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 4588999999999999999999999998754220 0011110 00 000
Q ss_pred --------------ccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC
Q 003473 408 --------------GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 469 (817)
Q Consensus 408 --------------G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~ 469 (817)
.-+...+|++.+.+.. ..-.|++||++|.+.. ..-|.||..++ ++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EP 159 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EP 159 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CC
Confidence 0123567777665532 2234999999999853 35589999998 56
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHH
Q 003473 470 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 516 (817)
Q Consensus 470 ~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~ 516 (817)
..++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 6788999999999999999998 64 58999999998888777653
No 208
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.72 E-value=7e-08 Score=110.99 Aligned_cols=210 Identities=21% Similarity=0.279 Sum_probs=125.5
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH--
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 405 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-- 405 (817)
.+.+++|.......+.+.+..+. .....+|++|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 36689999888777776654322 234469999999999999999998875 579999999876331
Q ss_pred ---hhccchH-------HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc-----CC-CC
Q 003473 406 ---YVGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GF-DS 469 (817)
Q Consensus 406 ---~vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd-----g~-~~ 469 (817)
..|.... .....|+.| ....|||||||.+....+ ..|-.++..-. +. ..
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q------------~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ------------TRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH------------HHHHHHHhcCcEEeCCCCCeE
Confidence 1111100 001112222 245899999999864322 12222332211 00 01
Q ss_pred CCcEEEEEEcCCC-------CCCCcccCCCCccceEEEeeCCCHHHHH----HHHHHHHhc----CCCC---CcccCCHH
Q 003473 470 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KELP---LAKDIDLG 531 (817)
Q Consensus 470 ~~~VIVIaATN~p-------d~LDpALlRpGRFdr~I~V~~Pd~~eR~----~ILk~~l~~----~~l~---l~~dvdl~ 531 (817)
...+.+|+||+.. ..+.+.|.. ||. .+.+..|...+|. .++.+++.+ .+.+ +.++ .+.
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 346 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE-TEA 346 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHH
Confidence 2357888898764 123344443 443 4667777766664 345555432 2211 2332 356
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 572 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 572 (817)
.|..+...-+-++|+++++.|+..+ ....|+.+|+...
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~ 384 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGE 384 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHh
Confidence 6777776667899999999988766 3456777776433
No 209
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.72 E-value=1.2e-07 Score=106.23 Aligned_cols=160 Identities=26% Similarity=0.402 Sum_probs=102.2
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCcEEEe----
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 397 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvpfi~i---- 397 (817)
...|.-++|+|..|..|--- --+| .-.|+||.|+.|||||+++||||.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P---------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDP---------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hccc---------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46789999999998876432 1222 23579999999999999999999865 4433210
Q ss_pred --echhhHH-------------------HhhccchHHH------HHHHH----------HHHhcCCeEEEEccccchhhc
Q 003473 398 --SASEFVE-------------------LYVGMGASRV------RDLFA----------RAKKEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 398 --s~s~~~~-------------------~~vG~~~~~v------r~lF~----------~A~~~aP~ILfIDEIDaL~~~ 440 (817)
.|..+.. .-.|.++.++ ....+ .|+.+ -.|++|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 1111111 1123333322 11111 11122 2499999998774
Q ss_pred cCCccccccchHHHHHHHHHHhhcc---------CC--CCCCcEEEEEEcCCC-CCCCcccCCCCccceEEEeeCC-CHH
Q 003473 441 RDGRFRIVSNDEREQTLNQLLTEMD---------GF--DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 507 (817)
Q Consensus 441 r~~~~~~~~~~e~~~~Ln~LL~emd---------g~--~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~V~~P-d~~ 507 (817)
.++.+.||..+. |+ ....++++|+|+|.- ..|-|.|+. ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 234455555443 22 234579999999975 467788888 99999999876 578
Q ss_pred HHHHHHHHHHh
Q 003473 508 GREAILKVHVS 518 (817)
Q Consensus 508 eR~~ILk~~l~ 518 (817)
+|.+|++..+.
T Consensus 223 ~rv~Ii~r~~~ 233 (423)
T COG1239 223 ERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHH
Confidence 88888887664
No 210
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=3.7e-07 Score=102.80 Aligned_cols=207 Identities=19% Similarity=0.249 Sum_probs=132.6
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHH---
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE--- 404 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~~~~--- 404 (817)
..+.|.+..+..+++++.. .+...-+..+.+.|-||||||.+..-+-... ....++++|..+.+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 3477888888888876643 2234567779999999999999998775543 22347777764322
Q ss_pred -------Hh----hccch-HHHHHHHHHH-Hhc-CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003473 405 -------LY----VGMGA-SRVRDLFARA-KKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 470 (817)
Q Consensus 405 -------~~----vG~~~-~~vr~lF~~A-~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 470 (817)
.+ .+.+. ......|+.- ... .+-|+++||+|.|+...+. +|..+. ++..+ .+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lF-ewp~l-p~ 287 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLF-EWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeeh-hcccC-Cc
Confidence 11 11111 2223334332 222 3679999999999855432 222222 23322 35
Q ss_pred CcEEEEEEcCCCCCCCcccCC----CCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH--HH
Q 003473 471 SAVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--AD 544 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlR----pGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg--aD 544 (817)
.++++|+.+|..|.-|..|.| .+--...+.|++++.++..+||...+........-+..+...|+...|.|| +.
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHH
Confidence 788999999988766655532 222346889999999999999999997653322223346777888888887 44
Q ss_pred HHHHHHHHHHHHHHhCC
Q 003473 545 LANLVNEAALLAGRLNK 561 (817)
Q Consensus 545 L~~Lv~eAal~A~r~~~ 561 (817)
+-.+|+.|..+|..+.+
T Consensus 368 aLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEKR 384 (529)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667777777766543
No 211
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.72 E-value=7.6e-08 Score=110.04 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=121.4
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh-
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 406 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~- 406 (817)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 455688887776666554443322 23469999999999999999997754 5799999998764321
Q ss_pred ----hccchH-------HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCCCC----
Q 003473 407 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS---- 469 (817)
Q Consensus 407 ----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~~---- 469 (817)
.|.... .....|..| ...+|||||||.+....+ ..|..++..- .....
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q------------~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ------------AKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH------------HHHHHHHhcCcEEeCCCCcee
Confidence 111000 001122222 235999999999864322 1222222221 10011
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHHH----HHHHHHhcC----CC---CCcccCCHH
Q 003473 470 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDIDLG 531 (817)
Q Consensus 470 ~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~~----ILk~~l~~~----~l---~l~~dvdl~ 531 (817)
..++.+|+|||..- ..+.+.|+|.. .+.+..|...+|.+ ++..++.+. +. .+.++ .++
T Consensus 276 ~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 351 (457)
T PRK11361 276 KVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM-AMS 351 (457)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHH
Confidence 23578999998641 12233344432 56778888887753 333333321 11 12322 255
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
.|..+...-+.++|+++++.|+..+ ....|+.+|+..
T Consensus 352 ~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 352 LLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 6666665667899999999988654 344677666543
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.72 E-value=1e-07 Score=101.27 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=80.9
Q ss_pred CCcccccccc-CchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhh
Q 003473 327 GDTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 402 (817)
Q Consensus 327 ~~~vtf~DV~-G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~ 402 (817)
....+|++.. +.+..+..+..+..+..+. . ....+++|+||||||||+||.++|.++ +..++.++..++
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 3456788775 3333333344444343321 1 123489999999999999999999987 788899999888
Q ss_pred HHHhhcc---chHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 403 VELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 403 ~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
....... ......++++... ..++|+|||++... ..+....++.+++..- +.. .-.+|.+|
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~R--y~~--~~~tiitS 202 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRR--SSS--KRPTGMLT 202 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHH--HhC--CCCEEEeC
Confidence 8644321 1112234444433 46699999998753 2234445666666542 111 22455588
Q ss_pred CCC
Q 003473 480 NRS 482 (817)
Q Consensus 480 N~p 482 (817)
|..
T Consensus 203 Nl~ 205 (244)
T PRK07952 203 NSN 205 (244)
T ss_pred CCC
Confidence 864
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=3.7e-08 Score=98.26 Aligned_cols=136 Identities=22% Similarity=0.326 Sum_probs=86.8
Q ss_pred CchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEE----eechhhHHH-------
Q 003473 337 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS----CSASEFVEL------- 405 (817)
Q Consensus 337 G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~----is~s~~~~~------- 405 (817)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-+.-.. -.|......
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 778888888876643 4667789999999999999999999976321111 111111100
Q ss_pred --h---h----ccchHHHHHHHHHHHh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCc
Q 003473 406 --Y---V----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 472 (817)
Q Consensus 406 --~---v----G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~ 472 (817)
+ . .-....++++.+.+.. ....|++|||+|.+.. ...|.||..|+. +..+
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe--pp~~ 132 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE--PPEN 132 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS--TTTT
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC--CCCC
Confidence 0 0 1234667776666533 2356999999999853 355899999984 4467
Q ss_pred EEEEEEcCCCCCCCcccCCCCccceEEEeeC
Q 003473 473 VIVLGATNRSDVLDPALRRPGRFDRVVMVET 503 (817)
Q Consensus 473 VIVIaATN~pd~LDpALlRpGRFdr~I~V~~ 503 (817)
+++|.+|+.++.|-|.+++ |. ..+.+++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8888899999999999988 53 3555554
No 214
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.5e-08 Score=108.92 Aligned_cols=97 Identities=37% Similarity=0.616 Sum_probs=70.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-Hhhccch-HHHHHHHHHHH----hcCCeEEEEccccchhhc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGA-SRVRDLFARAK----KEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~~vG~~~-~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 440 (817)
.+|||.||+|+|||+||+.||+-+++||..++|..+.. .|+|+.. ..+..++..|. +....||||||+|.|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999998876 5888754 45666666553 223459999999999854
Q ss_pred cCCc--cccccchHHHHHHHHHHhhccC
Q 003473 441 RDGR--FRIVSNDEREQTLNQLLTEMDG 466 (817)
Q Consensus 441 r~~~--~~~~~~~e~~~~Ln~LL~emdg 466 (817)
..+. .+..+. +.+-..||..++|
T Consensus 307 ~~~i~~~RDVsG---EGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSG---EGVQQALLKLLEG 331 (564)
T ss_pred Cccccccccccc---hhHHHHHHHHhcc
Confidence 3221 011222 3344556666664
No 215
>PRK12377 putative replication protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=101.26 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccc--hHHHHHHHHHHHhcCCeEEEEccccchhhc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 440 (817)
..+++|+||||||||+||.|+|+++ |..++.++..++.......- .....++++.. ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3689999999999999999999987 67888888888876432110 01122333333 345699999997642
Q ss_pred cCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 441 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 441 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
.++....++.+++..-- . ...-+|.|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~--~--~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRT--A--SMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHH--h--cCCCEEEEcCCC
Confidence 12333455665555422 1 112345578865
No 216
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.70 E-value=2.5e-08 Score=107.67 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=111.8
Q ss_pred cccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 323 ~~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~ 402 (817)
..+.+++-+++||++.++....+.++.+.- +.| +.|+|||||||||....+.|..+..|.-. .+-+
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~~m~ 96 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPT--TSML 96 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCc--hhHH
Confidence 456778889999999999998888763322 233 79999999999999999999998775111 1112
Q ss_pred HHHh----hccchHH-HHHHHHHHHh-------cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC
Q 003473 403 VELY----VGMGASR-VRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 470 (817)
Q Consensus 403 ~~~~----vG~~~~~-vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~ 470 (817)
.++- .|-+.-+ -...|..++. ..+..|++||.|++..+.| |+|-..+..+..+
T Consensus 97 lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n 161 (360)
T KOG0990|consen 97 LELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTAN 161 (360)
T ss_pred HHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccc
Confidence 2211 1111111 2234555542 2677999999999976543 4444566656555
Q ss_pred CcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC
Q 003473 471 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL 522 (817)
Q Consensus 471 ~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l 522 (817)
.. |+..+|.+..+.|++++ ||. .+.+.+-+.......+.+++.....
T Consensus 162 ~r--F~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 162 TR--FATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred eE--EEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 44 44568999999999987 665 4566677777778888888865433
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.68 E-value=5.1e-07 Score=105.71 Aligned_cols=220 Identities=17% Similarity=0.276 Sum_probs=135.5
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechhhHH
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 404 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~is~s~~~~ 404 (817)
|.+.+....++..+++..-.++ .....+++.|-||||||.+++.+-.++ ..+|+.|++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 4455555555555444322210 122368999999999999999998755 35677888765543
Q ss_pred ---Hhh-------cc------chHHHHHHHHHH-HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC
Q 003473 405 ---LYV-------GM------GASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 467 (817)
Q Consensus 405 ---~~v-------G~------~~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~ 467 (817)
.|. |. +...+..-|... -...+|||+|||+|.|....| .++..++..-.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt-- 536 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT-- 536 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--
Confidence 222 21 112233333311 124578999999999986542 35555555432
Q ss_pred CCCCcEEEEEEcCCCCCCCcccCC---CCccc-eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCH-
Q 003473 468 DSNSAVIVLGATNRSDVLDPALRR---PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG- 542 (817)
Q Consensus 468 ~~~~~VIVIaATN~pd~LDpALlR---pGRFd-r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg- 542 (817)
..+.+++||+..|..+. ++.++- ..|.+ +.|.|.+++..+.++|+...+.... .+..+ ..+.+|+.....||
T Consensus 537 ~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSGD 613 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSGD 613 (767)
T ss_pred CCCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhcccc
Confidence 34577888888887543 222221 11333 4788999999999999999886531 12222 23444554444444
Q ss_pred -HHHHHHHHHHHHHHHHhCC-------ccccHHHHHHHHHHHhc
Q 003473 543 -ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIA 578 (817)
Q Consensus 543 -aDL~~Lv~eAal~A~r~~~-------~~It~~d~~~Al~rvi~ 578 (817)
+-...+|++|+..|..+.. ..|++.|+.+|+...+.
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhh
Confidence 5566889999999877665 56788888888876543
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=4e-07 Score=100.58 Aligned_cols=134 Identities=17% Similarity=0.296 Sum_probs=95.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee-ch--------hhH--HHhhc--cchHHHHHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS-AS--------EFV--ELYVG--MGASRVRDLFARAK 422 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~is-~s--------~~~--~~~vG--~~~~~vr~lF~~A~ 422 (817)
.+.|.++||+||+|+||+++|+++|+.+-+. +-.|. |. ++. ....| -+...+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 5678889999999999999999999976431 11110 10 110 00001 24566777766654
Q ss_pred hc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceE
Q 003473 423 KE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 498 (817)
Q Consensus 423 ~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~ 498 (817)
.. .-.|++||++|.+.. ..-|.||..++. +..++++|.+|+.++.|.|.+++ |. ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 32 335999999999853 345899999984 55678888899999999999988 53 48
Q ss_pred EEeeCCCHHHHHHHHHHH
Q 003473 499 VMVETPDKIGREAILKVH 516 (817)
Q Consensus 499 I~V~~Pd~~eR~~ILk~~ 516 (817)
+.+.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999998888777664
No 219
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.66 E-value=1.7e-07 Score=102.74 Aligned_cols=132 Identities=23% Similarity=0.329 Sum_probs=77.6
Q ss_pred ccccccccCch-HhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 329 TITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 329 ~vtf~DV~G~e-eaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
..+|+++...+ +.+..+..+.+++.+ |.. .+..+|++|+||+|||||+||.|+|+++ |.++..++.++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35666665433 222233333444432 221 2346799999999999999999999987 78888888888766
Q ss_pred Hhhcc-chHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchH-HHHHHHHHHhh-ccCCCCCCcEEEEEEcCC
Q 003473 405 LYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDE-REQTLNQLLTE-MDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 405 ~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e-~~~~Ln~LL~e-mdg~~~~~~VIVIaATN~ 481 (817)
..... ....+.+.++..+ ...+|+||||.+-. .+++ +..++..++.. +. .+.-+|.|||.
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~----------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl 260 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ----------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNF 260 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc----------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCC
Confidence 43221 1112334444432 34599999997642 2222 23455555542 32 22345668886
Q ss_pred C
Q 003473 482 S 482 (817)
Q Consensus 482 p 482 (817)
+
T Consensus 261 ~ 261 (306)
T PRK08939 261 D 261 (306)
T ss_pred C
Confidence 5
No 220
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.61 E-value=2.8e-07 Score=94.19 Aligned_cols=184 Identities=28% Similarity=0.351 Sum_probs=93.1
Q ss_pred cCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeec-h-hhH---HHh-
Q 003473 336 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-S-EFV---ELY- 406 (817)
Q Consensus 336 ~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv---pfi~is~-s-~~~---~~~- 406 (817)
+|.++..+.|.+++.. .....++|+||.|+|||+|++.+.....- ..+++.. . ... ..+
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4566665656554432 23457999999999999999999998832 1111111 0 000 000
Q ss_pred ------------h-----------------ccchHHHHHHHHHHHhcC-CeEEEEccccchh-hccCCccccccchHHHH
Q 003473 407 ------------V-----------------GMGASRVRDLFARAKKEA-PSIIFIDEIDAVA-KSRDGRFRIVSNDEREQ 455 (817)
Q Consensus 407 ------------v-----------------G~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~ 455 (817)
. ......+..+++...... ..||+|||+|.+. ... +...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~ 139 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKD 139 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHH
Confidence 0 112345666666665543 4899999999997 211 1123
Q ss_pred HHHHHHhhccCCCCCCcE-EEEEEcCCC---C--CCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCC-cccC
Q 003473 456 TLNQLLTEMDGFDSNSAV-IVLGATNRS---D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDI 528 (817)
Q Consensus 456 ~Ln~LL~emdg~~~~~~V-IVIaATN~p---d--~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l-~~dv 528 (817)
.+..|...++......++ +|+++++.. + .-...+. +|+.. +.+++.+.++..++++..+.+. ..+ .++.
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 334444444432233343 444444321 1 1122233 47776 9999999999999999987664 333 2344
Q ss_pred CHHHHHhhcCCCCHHHHH
Q 003473 529 DLGDIASMTTGFTGADLA 546 (817)
Q Consensus 529 dl~~LA~~t~G~SgaDL~ 546 (817)
+++.+...+.| .|+-|.
T Consensus 216 ~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCC-CHHHHh
Confidence 67778888877 454443
No 221
>PRK06526 transposase; Provisional
Probab=98.59 E-value=1.3e-07 Score=101.09 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEccccchhhc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 440 (817)
.+.+++|+||||||||+||.+++.++ |..+..++..++++..... ........+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 35679999999999999999998875 7777777787777654211 111222333332 3457999999987642
Q ss_pred cCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 441 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 441 r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
+......+.+++..... +. .+|.+||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 22333455666654321 12 256688876
No 222
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.59 E-value=2.7e-07 Score=109.07 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=129.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccch--HHH--------HHHHHHHHhcCCeEEEEccc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGA--SRV--------RDLFARAKKEAPSIIFIDEI 434 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g--vpfi~is~s~~~~~~vG~~~--~~v--------r~lF~~A~~~aP~ILfIDEI 434 (817)
.||||.|++||+|++++++++.-+. .||+.+..+--.+..+|... ..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58888766555555555431 100 12222222 249999999
Q ss_pred cchhhccCCccccccchHHHHHHHHHHhhccCC-----------CCCCcEEEEEEcCCC---CCCCcccCCCCccceEEE
Q 003473 435 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 500 (817)
Q Consensus 435 DaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~~~VIVIaATN~p---d~LDpALlRpGRFdr~I~ 500 (817)
..+. ..+++.|+.-|+.- .-..++++||+-|.. ..|.++++. ||+.+|.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8774 34667778777632 113568888874432 458899998 9999999
Q ss_pred eeCCCHHHH-------HHHHHHHHhcCCCCCcccCCHHHHHhh--cCCC-CHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 501 VETPDKIGR-------EAILKVHVSKKELPLAKDIDLGDIASM--TTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 501 V~~Pd~~eR-------~~ILk~~l~~~~l~l~~dvdl~~LA~~--t~G~-SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
++.|+..+. ..|....-.-.++.+++. .+..++.. ..|. |.+-...+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 998876542 133322221123334333 23443332 2355 778888899999999999999999999999
Q ss_pred HHHHHHhc
Q 003473 571 HAVERSIA 578 (817)
Q Consensus 571 ~Al~rvi~ 578 (817)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99977653
No 223
>PRK15115 response regulator GlrR; Provisional
Probab=98.57 E-value=5.2e-07 Score=103.01 Aligned_cols=206 Identities=22% Similarity=0.330 Sum_probs=118.0
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh---
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 407 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~v--- 407 (817)
.++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46666655444444333221 123359999999999999999998764 57999999986633211
Q ss_pred --ccch-------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhc--cCCCC----CCc
Q 003473 408 --GMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFDS----NSA 472 (817)
Q Consensus 408 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~em--dg~~~----~~~ 472 (817)
|... .....+|+.+ ...+|||||||.|....+ ..|-.++..- ..... ...
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q------------~~L~~~l~~~~~~~~g~~~~~~~~ 269 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPLQ------------VKLLRVLQERKVRPLGSNRDIDID 269 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHHH------------HHHHHHHhhCCEEeCCCCceeeee
Confidence 1100 0001122222 245999999999865432 1222222211 11111 136
Q ss_pred EEEEEEcCCCCCCCcccCCCCccc-------eEEEeeCCCHHHHHH----HHHHHHhc----CCC---CCcccCCHHHHH
Q 003473 473 VIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLGDIA 534 (817)
Q Consensus 473 VIVIaATN~pd~LDpALlRpGRFd-------r~I~V~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dvdl~~LA 534 (817)
+.+|+||+.. ++..+ ..|+|. ..+.+..|...+|.+ +++.++.+ .+. .+.++ .+..|.
T Consensus 270 ~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~ 345 (444)
T PRK15115 270 VRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLM 345 (444)
T ss_pred EEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHH
Confidence 7899999864 33332 234542 156777888888842 33444432 111 13333 366677
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHH
Q 003473 535 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 571 (817)
Q Consensus 535 ~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 571 (817)
.+...-+.++|+++++.|+..+ ....|+.+++..
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 7775668899999999987654 345677666543
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.57 E-value=4.8e-07 Score=96.24 Aligned_cols=180 Identities=18% Similarity=0.273 Sum_probs=123.6
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEee-----
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS----- 398 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is----- 398 (817)
..+-+|+.+.+.++....|+.+... ...| ++|+|||+|+||-+.+.++.+++ |++=..+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-----------~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-----------GDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-----------CCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 4455788888888888888775541 1223 59999999999999999999886 22211111
Q ss_pred -------------chhhHHH---hhcc-chHHHHHHHHHHHhcCC---------eEEEEccccchhhccCCccccccchH
Q 003473 399 -------------ASEFVEL---YVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIVSNDE 452 (817)
Q Consensus 399 -------------~s~~~~~---~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~~~~e 452 (817)
....++. -.|. ..--+++++++..+..| .+++|.|.|.|.++.|
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ---------- 144 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ---------- 144 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH----------
Confidence 1111110 0111 22346777777655443 4999999999986644
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHH
Q 003473 453 REQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGD 532 (817)
Q Consensus 453 ~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~ 532 (817)
..|-..|+.+..+. .+|..+|....+-+++++ | ...|.++.|+.++...++...+.+.++.++.++ +..
T Consensus 145 -----~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~-l~r 213 (351)
T KOG2035|consen 145 -----HALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL-LKR 213 (351)
T ss_pred -----HHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH-HHH
Confidence 34555677666655 455567888888888987 4 246889999999999999999999988887554 677
Q ss_pred HHhhcCC
Q 003473 533 IASMTTG 539 (817)
Q Consensus 533 LA~~t~G 539 (817)
+|..+.|
T Consensus 214 Ia~kS~~ 220 (351)
T KOG2035|consen 214 IAEKSNR 220 (351)
T ss_pred HHHHhcc
Confidence 7777655
No 225
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=5.7e-07 Score=99.16 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE----EEeechhhHH-------Hhh-------c------cchHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVE-------LYV-------G------MGASRVRDLF 418 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf----i~is~s~~~~-------~~v-------G------~~~~~vr~lF 418 (817)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+..++. .++ | -+...||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 56788899999999999999999998764321 0111111111 001 1 1245667776
Q ss_pred HHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCc
Q 003473 419 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 494 (817)
Q Consensus 419 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGR 494 (817)
+.+... .-.|++||++|.+.. ..-|.||..|+. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999853 345899999984 44567788888999999999998 5
Q ss_pred cceEEEeeCCCHHHHHHHHHH
Q 003473 495 FDRVVMVETPDKIGREAILKV 515 (817)
Q Consensus 495 Fdr~I~V~~Pd~~eR~~ILk~ 515 (817)
. ..+.|..|+.++..+.|..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 4 3788999998877766653
No 226
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.56 E-value=1.9e-07 Score=107.09 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=120.1
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh--
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 406 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~-- 406 (817)
+.+++|...+..++.+.+..+. .....+++.|.+||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3468888887777766554432 223469999999999999999998764 5799999997663321
Q ss_pred ---hccchHH-------HHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CCC----CC
Q 003473 407 ---VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GFD----SN 470 (817)
Q Consensus 407 ---vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~~----~~ 470 (817)
.|..... ....|+ ....++|||||||.+.... ...|..++..-. ... ..
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~~~~------------q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMPLDA------------QTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCCHHH------------HHHHHHHHhcCcEEECCCCceee
Confidence 1210000 001122 2235689999999986432 222333333211 001 12
Q ss_pred CcEEEEEEcCCCC-------CCCcccCCCCccceEEEeeCCCHHHH----HHHHHHHHhcC----CC---CCcccCCHHH
Q 003473 471 SAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSKK----EL---PLAKDIDLGD 532 (817)
Q Consensus 471 ~~VIVIaATN~pd-------~LDpALlRpGRFdr~I~V~~Pd~~eR----~~ILk~~l~~~----~l---~l~~dvdl~~ 532 (817)
.++.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..++..++... +. .+.++ .+..
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 343 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-ALER 343 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHH
Confidence 3577888887641 22223322 332 345666665544 34555544321 11 12222 2555
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 533 IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 533 LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
|......-+-++|+++++.|+..+. ...|+.+|+...+
T Consensus 344 L~~~~wpgNvreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 344 LKQLRWPGNVRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 5666544466999999999987662 3567777765444
No 227
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.56 E-value=1.2e-06 Score=102.31 Aligned_cols=209 Identities=18% Similarity=0.214 Sum_probs=118.8
Q ss_pred ccCCCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhh
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is-~s~~ 402 (817)
.+...+.+.+||+-...-.++++..+.... .+....+-+||+||||||||+++++||+++|..+..-. ...+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 456678889999998766666666554311 12333456889999999999999999999987666532 2111
Q ss_pred H------HHhhccc---------hHHHHHH-HHHHHh-----------cCCeEEEEccccchhhccCCccccccchHHHH
Q 003473 403 V------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 455 (817)
Q Consensus 403 ~------~~~vG~~---------~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 455 (817)
. ..|.+.. .....++ +..++. ..+.||+|||+-.+... .......
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~ 154 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFRE 154 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHH
Confidence 0 0111110 0112222 122221 24669999999866422 1133344
Q ss_pred HHHHHHhhccCCCCCC-cEEEEEE-c------CCC--------CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 003473 456 TLNQLLTEMDGFDSNS-AVIVLGA-T------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 519 (817)
Q Consensus 456 ~Ln~LL~emdg~~~~~-~VIVIaA-T------N~p--------d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~ 519 (817)
.|.+++.. ... ++|+|.+ + |.. ..+++.++...+. .+|.|.+-...-....|+..+..
T Consensus 155 ~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 155 ALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 44444432 223 6777766 1 111 1456666554344 47888887776665555555543
Q ss_pred C-----CC-CCcccCC-HHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 003473 520 K-----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 557 (817)
Q Consensus 520 ~-----~l-~l~~dvd-l~~LA~~t~G~SgaDL~~Lv~eAal~A~ 557 (817)
. +. ..+.... ++.|+..+. +||+.+++.-...+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 2 11 1222122 566766654 499999998887776
No 228
>PRK08181 transposase; Validated
Probab=98.56 E-value=3.6e-07 Score=98.47 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEccccchhhcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 441 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 441 (817)
..+++|+||||||||+||.|++.++ |..++.++..++++.+... ........++.. ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4579999999999999999998754 7888888988888754221 112233344433 3456999999987642
Q ss_pred CCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 442 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 442 ~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
++.....+.+++..... +. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 23334455566554321 12 355578765
No 229
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.55 E-value=1.5e-08 Score=97.17 Aligned_cols=111 Identities=28% Similarity=0.378 Sum_probs=55.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech-hhHH-HhhccchHHHH-HHHHHHHh-cCCeEEEEccccchhhccCC
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE-LYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 443 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s-~~~~-~~vG~~~~~vr-~lF~~A~~-~aP~ILfIDEIDaL~~~r~~ 443 (817)
+|||.|+||+|||++|+++|+.++..|..|.+. ++.- ...|...-... ..|+-.+. --..|+++|||....++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 589999999999999999999999999988764 3322 12221100000 00000000 00139999999886543
Q ss_pred ccccccchHHHHHHHHHHhhccC---------CCCCCcEEEEEEcCCCC-----CCCcccCCCCcc
Q 003473 444 RFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRF 495 (817)
Q Consensus 444 ~~~~~~~~e~~~~Ln~LL~emdg---------~~~~~~VIVIaATN~pd-----~LDpALlRpGRF 495 (817)
+.+.||..|.. +.-...++||||-|..+ .|+++++. ||
T Consensus 78 ------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 78 ------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33445555432 12245689999999865 67777776 66
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=4.5e-07 Score=100.64 Aligned_cols=133 Identities=17% Similarity=0.282 Sum_probs=94.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------cEEEeechhhHH---------Hhh-----ccchHHHHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSASEFVE---------LYV-----GMGASRVRDLFARA 421 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------pfi~is~s~~~~---------~~v-----G~~~~~vr~lF~~A 421 (817)
.+.|..+||+||+|+||+++|.++|..+-+ ++-.|.....+. ... .-+...+|++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 577889999999999999999999997643 111111000110 000 12345677776655
Q ss_pred Hh----cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccce
Q 003473 422 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 497 (817)
Q Consensus 422 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 497 (817)
.. ....|++||++|.+.. +.-|.||..|+ ++..++++|..|+.++.|.|.+++ |..
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 43 3345999999999853 45589999998 455678999999999999999998 543
Q ss_pred EEEeeCCCHHHHHHHHHH
Q 003473 498 VVMVETPDKIGREAILKV 515 (817)
Q Consensus 498 ~I~V~~Pd~~eR~~ILk~ 515 (817)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 689999998887766654
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.7e-07 Score=109.18 Aligned_cols=128 Identities=32% Similarity=0.375 Sum_probs=92.9
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCC-CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 404 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~---- 404 (817)
+.|+|++++...+.+.|..-+.. ++. .++--+||.||.|+|||-||+|+|..+ .-.|+.++.++|.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 36899999999988888664321 111 355669999999999999999999986 46789999998776
Q ss_pred -----HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC---------C
Q 003473 405 -----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------N 470 (817)
Q Consensus 405 -----~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~---------~ 470 (817)
.|+|. ...-.+.+..+...-|||+|||||.-. ..++|.|++.+|...- -
T Consensus 637 igsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 637 IGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred cCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeec
Confidence 13333 334466777777777999999999742 2356666666664421 2
Q ss_pred CcEEEEEEcCCC
Q 003473 471 SAVIVLGATNRS 482 (817)
Q Consensus 471 ~~VIVIaATN~p 482 (817)
.++|||.|+|.-
T Consensus 700 kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 700 KNAIFIMTSNVG 711 (898)
T ss_pred cceEEEEecccc
Confidence 468999999863
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.49 E-value=9.1e-07 Score=94.65 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhccch-HHHHHHHHHHHhcCCeEEEEccccchh
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVA 438 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~ 438 (817)
.+.+++|+||||||||+||-|+++++ |.++..++..+++...-..-. .....-+.... ....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCcc
Confidence 46789999999999999999999886 889999999998864221111 11111122211 233599999997753
No 233
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.46 E-value=3.2e-07 Score=104.35 Aligned_cols=202 Identities=21% Similarity=0.298 Sum_probs=116.8
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhh---
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 407 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~v--- 407 (817)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46666666555544333322 234569999999999999999997654 57999999986543211
Q ss_pred --ccchHH-------HHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC---------C
Q 003473 408 --GMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 469 (817)
Q Consensus 408 --G~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~---------~ 469 (817)
|..... ...+|.. ...++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 110000 0011222 2356999999999865432 22333332110 0
Q ss_pred CCcEEEEEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHH----HHHHHHHhc----CCC---CCcccCCHH
Q 003473 470 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE----AILKVHVSK----KEL---PLAKDIDLG 531 (817)
Q Consensus 470 ~~~VIVIaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~----~ILk~~l~~----~~l---~l~~dvdl~ 531 (817)
...+.+|+||+.+- ..+..+|+|.+ .+.+..|...+|. .++..++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12467888887642 22334455543 5677788887764 344444433 111 12322 355
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 532 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 532 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
.|......-+.++|+++++.|+..+ ....|+.+++.
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~ 383 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELP 383 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCc
Confidence 6666664457789999999887654 34556666654
No 234
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.5e-06 Score=95.85 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=93.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc------EEEee-ch--------hhHHHhh---c--cchHHHHHHHHHH
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISCS-AS--------EFVELYV---G--MGASRVRDLFARA 421 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp------fi~is-~s--------~~~~~~v---G--~~~~~vr~lF~~A 421 (817)
..+.|..+||+||.|+||+.+|+++|..+-+. .-.|. |. |+..... | -+...+|++-+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 35778899999999999999999999876331 11110 00 1100000 1 1335667765555
Q ss_pred Hhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccce
Q 003473 422 KKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 497 (817)
Q Consensus 422 ~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 497 (817)
... .-.|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|-|.+++ |. .
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q 160 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-Q 160 (319)
T ss_pred hhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-e
Confidence 332 245999999999853 345899999984 55678899999999999999998 53 3
Q ss_pred EEEeeCCCHHHHHHHHHH
Q 003473 498 VVMVETPDKIGREAILKV 515 (817)
Q Consensus 498 ~I~V~~Pd~~eR~~ILk~ 515 (817)
.+.|+.|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999998887776653
No 235
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=1.4e-06 Score=83.08 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=69.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 444 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g--vpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 444 (817)
+.++|+||.|||||++++.++.... -.++++++.+......... . +.+.+.+.....+++|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 7778888776554221111 0 2233333222256799999998873
Q ss_pred cccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC----CcccCCCCccceEEEeeCCCHHH
Q 003473 445 FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL----DPALRRPGRFDRVVMVETPDKIG 508 (817)
Q Consensus 445 ~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L----DpALlRpGRFdr~I~V~~Pd~~e 508 (817)
.....+..+...- . ++-||.|+.....+ ...+ +||.. .+.+.+.+..|
T Consensus 75 -------~~~~~lk~l~d~~----~--~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLVDNG----P--NIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHHHhc----c--CceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 1334455554421 1 23333333322222 2333 46765 67777777655
No 236
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.44 E-value=1.5e-06 Score=101.37 Aligned_cols=161 Identities=27% Similarity=0.285 Sum_probs=83.9
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhhC-CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec--hhhHHHhhccc
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA--SEFVELYVGMG 410 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~--s~~~~~~vG~~ 410 (817)
.|.|.|++|+-|.-.+---. ...+...| .+..-+|||+|.||||||-+.+.+++-+..-.+ .|+ +.- +|..
T Consensus 430 sIye~edvKkglLLqLfGGt-~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa----vGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT-RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA----VGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhcCC-cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch----hcce
Confidence 46667777765532221111 11222222 344567999999999999999999987643332 222 111 1111
Q ss_pred hH-----HHHHHHHHHH---hcCCeEEEEccccchhhccCCccccccchHHH-HHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 411 AS-----RVRDLFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 411 ~~-----~vr~lF~~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
+. .-+++.-+.- ...-.|.+|||+|++...... +.++..+ |+++--..-+- ..-+.+.-|||++|.
T Consensus 504 ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS----vLhEvMEQQTvSIAKAGII-~sLNAR~SVLAaANP 578 (804)
T KOG0478|consen 504 AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS----VLHEVMEQQTLSIAKAGII-ASLNARCSVLAAANP 578 (804)
T ss_pred eeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH----HHHHHHHHhhhhHhhccee-eeccccceeeeeecc
Confidence 10 0111111111 012348899999998533211 1222221 12211111100 012455678999985
Q ss_pred CC-------------CCCcccCCCCccceEE-EeeCCCHH
Q 003473 482 SD-------------VLDPALRRPGRFDRVV-MVETPDKI 507 (817)
Q Consensus 482 pd-------------~LDpALlRpGRFdr~I-~V~~Pd~~ 507 (817)
.. .|+|.|++ |||.++ .++.||..
T Consensus 579 ~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 579 IRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 32 57899999 999766 46677776
No 237
>PRK06921 hypothetical protein; Provisional
Probab=98.43 E-value=1.9e-06 Score=92.83 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
...+++|+||||||||+|+.|+|+++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45689999999999999999999975 6778888877765543211 11122222222 2346999999954
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.43 E-value=1.3e-06 Score=96.90 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=49.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc---chHHHHHHHHHHHhcCCeEEEEccccch
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 437 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL 437 (817)
.+++|+||||||||+||.|+|+++ |..+++++..++....... ........++... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999986 7888999998887754221 1111122233322 3459999999765
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.43 E-value=2e-07 Score=90.05 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=56.0
Q ss_pred cCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHHHhhccchH
Q 003473 336 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 412 (817)
Q Consensus 336 ~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g---vpfi~is~s~~~~~~vG~~~~ 412 (817)
+|...+.+++++-+..+.. ....|||+|+|||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4666777777776665443 234599999999999999999998764 477777776532
Q ss_pred HHHHHHHHHHhcCCeEEEEccccchhhc
Q 003473 413 RVRDLFARAKKEAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 413 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 440 (817)
.++++.+ ....|||+|||.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 4455555 4559999999998643
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=98.43 E-value=8.9e-07 Score=94.93 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhc-cchHHHHHHHHHHHhcCCeEEEEccccchh
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVG-MGASRVRDLFARAKKEAPSIIFIDEIDAVA 438 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 438 (817)
...+++|+||||||||+||.+++.++ |..+..+++.++...+.. .....+...|... ...+++++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 34579999999999999999997654 777778888877754321 1112244455543 2456799999998753
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=9.3e-07 Score=83.24 Aligned_cols=98 Identities=26% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeechhhHH------H----h--h--c-cchHHHHHHHHHH-
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------L----Y--V--G-MGASRVRDLFARA- 421 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~--------gvpfi~is~s~~~~------~----~--v--G-~~~~~vr~lF~~A- 421 (817)
.+.++++||||+|||++++.++... ..+++.+++..... . + . . .....+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 77888887654331 1 0 0 1 1223333444443
Q ss_pred HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 422 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
......+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 33434599999999974 1 345666655555 333345555543
No 242
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.40 E-value=8.8e-07 Score=105.36 Aligned_cols=223 Identities=26% Similarity=0.267 Sum_probs=129.9
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhh--CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEe-echhhHHHhhc
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVG 408 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~l--g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~i-s~s~~~~~~vG 408 (817)
.-.|.|.+++|+.+.-.+ +.-..+...- ..+..-+|||+|.||||||.|.|.+++-+-.-++.- .++. -+|
T Consensus 285 aPsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 345889999998764322 2222221111 134456799999999999999999998875544331 1111 123
Q ss_pred cchHHHHHHH--H---HHH---hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CC
Q 003473 409 MGASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DS 469 (817)
Q Consensus 409 ~~~~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~ 469 (817)
.++..+++-+ + .|- -..+.|.+|||+|.+.... -+.+...|+.. .-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeec
Confidence 3333333322 1 111 1235699999999875321 12333333321 11
Q ss_pred CCcEEEEEEcCCCC-------------CCCcccCCCCccceEEEee-CCCHHHHH----HHHHHHHhc------------
Q 003473 470 NSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMVE-TPDKIGRE----AILKVHVSK------------ 519 (817)
Q Consensus 470 ~~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~V~-~Pd~~eR~----~ILk~~l~~------------ 519 (817)
+.+.-|+||+|... .|+++|++ |||..+.+. .|+.+.-+ .|+..|...
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~ 501 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVD 501 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccc
Confidence 34567888998754 57888999 999877654 56665333 344444210
Q ss_pred ------------------CCC-CCcccCCHHHHH------h---------hcCCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 003473 520 ------------------KEL-PLAKDIDLGDIA------S---------MTTGFTGADLANLVNEAALLAGRLNKVVVE 565 (817)
Q Consensus 520 ------------------~~l-~l~~dvdl~~LA------~---------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It 565 (817)
+.+ |.-.+...+.|. + .+...|.++|+.+++-|-..|..+-+..|+
T Consensus 502 ~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~ 581 (682)
T COG1241 502 EVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVE 581 (682)
T ss_pred ccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCC
Confidence 001 111110111111 0 123367899999999999999888899999
Q ss_pred HHHHHHHHHHHh
Q 003473 566 KIDFIHAVERSI 577 (817)
Q Consensus 566 ~~d~~~Al~rvi 577 (817)
.+|+.+|+.-+.
T Consensus 582 ~eD~~eAi~lv~ 593 (682)
T COG1241 582 EEDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.1e-06 Score=97.32 Aligned_cols=133 Identities=24% Similarity=0.379 Sum_probs=89.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--------cEEEee-ch--------hhHHHhh-------c-----cchHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------PFISCS-AS--------EFVELYV-------G-----MGASR 413 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--------pfi~is-~s--------~~~~~~v-------G-----~~~~~ 413 (817)
.+.|..+||+||+|+|||++|+++|+.+.+ |+-.|. |. +|..... | -+...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 478889999999999999999999998643 111110 00 1100000 1 13466
Q ss_pred HHHHHHHHHhc----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCccc
Q 003473 414 VRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 489 (817)
Q Consensus 414 vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpAL 489 (817)
+|++.+.+... ...|++||++|.+.. +..|.|+..++... .++.+|.+|+.++.+.+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHH
Confidence 78887777542 235999999998853 23466667666543 3456777888888999998
Q ss_pred CCCCccceEEEeeCCCHHHHHHHHHH
Q 003473 490 RRPGRFDRVVMVETPDKIGREAILKV 515 (817)
Q Consensus 490 lRpGRFdr~I~V~~Pd~~eR~~ILk~ 515 (817)
.+ |. ..+.|++|+.++..+.|..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 87 43 4788999998887766643
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=6.3e-07 Score=90.91 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
...|++|+||||||||+||.|++.++ |.++..++.+++++..... ......++++... .+.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 45789999999999999999999875 8899999999988754322 1122334444443 345899999864
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.35 E-value=1.4e-07 Score=104.48 Aligned_cols=216 Identities=25% Similarity=0.245 Sum_probs=112.7
Q ss_pred cccCchHhHHHHHHHHHHhcChhHH---hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccc
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKY---IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 410 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~---~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~ 410 (817)
+|.|.+.+|..+.- .|-..... .....+..-++||+|.||||||.|.+.++.-+...+ ++++..... .|.+
T Consensus 25 ~i~g~~~iK~aill---~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~--~gLt 98 (331)
T PF00493_consen 25 SIYGHEDIKKAILL---QLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSA--AGLT 98 (331)
T ss_dssp TTTT-HHHHHHHCC---CCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTC--CCCC
T ss_pred cCcCcHHHHHHHHH---HHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCccc--CCcc
Confidence 57788888775532 11111100 001124456799999999999999999876554333 232221100 0000
Q ss_pred hHH----------HH-HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC-----------
Q 003473 411 ASR----------VR-DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 468 (817)
Q Consensus 411 ~~~----------vr-~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~----------- 468 (817)
+.. +. ..+-.|. ..|++|||+|.+... ....|+..|+.-.
T Consensus 99 a~~~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 99 ASVSRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp EEECCCGGTSSECEEE-HHHHCT---TSEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEE
T ss_pred ceeccccccceeEEeCCchhccc---Cceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhccc
Confidence 000 00 1122332 349999999997531 1245555555321
Q ss_pred CCCcEEEEEEcCCCC-------------CCCcccCCCCccceEEEe-eCCCHHHHHHHHHHHHhcCCC------------
Q 003473 469 SNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL------------ 522 (817)
Q Consensus 469 ~~~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I~V-~~Pd~~eR~~ILk~~l~~~~l------------ 522 (817)
-+.+.-|+||+|... .+++.|++ |||..+.+ +.|+.+.-..|.++.+.....
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~ 238 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKN 238 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SS
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecccccccccccccccc
Confidence 134678999998754 47889998 99988764 677766555555544433210
Q ss_pred --CCcccCC-------------------HHHHHh-------------hcCCCCHHHHHHHHHHHHHHHHHhCCccccHHH
Q 003473 523 --PLAKDID-------------------LGDIAS-------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKID 568 (817)
Q Consensus 523 --~l~~dvd-------------------l~~LA~-------------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d 568 (817)
.++.+.- .+.|.. .....|.+.|+.+++-|...|.-+-+..|+.+|
T Consensus 239 ~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~D 318 (331)
T PF00493_consen 239 DKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEED 318 (331)
T ss_dssp S-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHH
T ss_pred CCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHH
Confidence 1111110 111110 112356788999999999999999999999999
Q ss_pred HHHHHHH
Q 003473 569 FIHAVER 575 (817)
Q Consensus 569 ~~~Al~r 575 (817)
+..|+.-
T Consensus 319 v~~Ai~L 325 (331)
T PF00493_consen 319 VEEAIRL 325 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 246
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.28 E-value=5.5e-06 Score=96.15 Aligned_cols=221 Identities=21% Similarity=0.229 Sum_probs=128.7
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHh--hhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhcc
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYI--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 409 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~--~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~ 409 (817)
|-.|.|.+.+|.-|.-.+ +---.++. ....+..-+||++|.|||||+-+.+++++-+-..++.. +.. +.-.|.
T Consensus 344 ~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-Gka--SSaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKA--SSAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Ccc--cccccc
Confidence 667899999998764322 22222222 23345566799999999999999999998876554432 110 000111
Q ss_pred chHHHHH-----HHHHHHh---cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCC-----------CCC
Q 003473 410 GASRVRD-----LFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 470 (817)
Q Consensus 410 ~~~~vr~-----lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~-----------~~~ 470 (817)
++.-+++ .--+|-+ ..-.|-.|||+|.+..+.+ ..++..|+.- .-+
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEeec
Confidence 1111111 0001110 1134899999999865332 1233333321 113
Q ss_pred CcEEEEEEcCCCC-------------CCCcccCCCCccceEE-EeeCCCHHHHHHHHHHHHhcCCCCCcccC------CH
Q 003473 471 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDI------DL 530 (817)
Q Consensus 471 ~~VIVIaATN~pd-------------~LDpALlRpGRFdr~I-~V~~Pd~~eR~~ILk~~l~~~~l~l~~dv------dl 530 (817)
.+--||||+|... .+++++++ |||..+ -++.|+...-..|-++.+..+. .+++.+ .+
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYTL 560 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-cccccccccccccH
Confidence 4456888998642 56899998 999755 4677887666555555443311 011110 00
Q ss_pred HHH-------------------------------------HhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 531 GDI-------------------------------------ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 531 ~~L-------------------------------------A~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
+.+ .+-+.+.|.++|+.+++-+-.+|..+-+..|+.+|+.+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 110 0113467788999999988888887778888999988887
Q ss_pred HH
Q 003473 574 ER 575 (817)
Q Consensus 574 ~r 575 (817)
+-
T Consensus 641 eL 642 (764)
T KOG0480|consen 641 EL 642 (764)
T ss_pred HH
Confidence 54
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=3.9e-05 Score=88.27 Aligned_cols=207 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred ccCCCccccccccCc----hHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003473 324 SEQGDTITFADVAGV----DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 399 (817)
Q Consensus 324 ~~~~~~vtf~DV~G~----eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~ 399 (817)
+++..+-|.+||+=. ++++++|+ .+.++.. .-..+-+||+||+|||||+.++.++.++|..++.-+-
T Consensus 73 ~eKy~P~t~eeLAVHkkKI~eVk~WL~-~~~~~~~--------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 73 VEKYKPRTLEELAVHKKKISEVKQWLK-QVAEFTP--------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred HHhcCcccHHHHhhhHHhHHHHHHHHH-HHHHhcc--------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 344455567777654 34444444 2222221 1123458899999999999999999999987765431
Q ss_pred -------------hhhHHHhhccchHHHHHHHHHHHh------------cCCeEEEEccccchhhccCCccccccchHHH
Q 003473 400 -------------SEFVELYVGMGASRVRDLFARAKK------------EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 454 (817)
Q Consensus 400 -------------s~~~~~~vG~~~~~vr~lF~~A~~------------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 454 (817)
+.+...+...--..+......+.+ ..|.+|+|||+-...... ..
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-----------~~ 212 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-----------DS 212 (634)
T ss_pred CccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-----------hH
Confidence 111111111111122222333311 246699999997765321 12
Q ss_pred HHHHHHHhhccCCCCCCcEEEE-EEcCCCCCCCcccCCC------CccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcc-
Q 003473 455 QTLNQLLTEMDGFDSNSAVIVL-GATNRSDVLDPALRRP------GRFDRVVMVETPDKIGREAILKVHVSKKELPLAK- 526 (817)
Q Consensus 455 ~~Ln~LL~emdg~~~~~~VIVI-aATN~pd~LDpALlRp------GRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~- 526 (817)
..+..+|.+.-... ...+|+| .-++.++..++..+.+ .|.+ .|.|.+-...-....|+..+.....+...
T Consensus 213 ~~f~evL~~y~s~g-~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~ 290 (634)
T KOG1970|consen 213 ETFREVLRLYVSIG-RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGI 290 (634)
T ss_pred HHHHHHHHHHHhcC-CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCC
Confidence 23333333322222 2233333 3233334444333221 2433 67777766666667777777654444432
Q ss_pred ----cCCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 003473 527 ----DIDLGDIASMTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 527 ----dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 556 (817)
...++.++.. +++||+.+++...+.+
T Consensus 291 k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 291 KVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred cCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 2233444443 4559999999888776
No 248
>PF05729 NACHT: NACHT domain
Probab=98.21 E-value=1.4e-05 Score=77.49 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=75.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc------C--Cc-EEEeechhhHH------------HhhccchHHHHHHH-HHHHhcC
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA------E--VP-FISCSASEFVE------------LYVGMGASRVRDLF-ARAKKEA 425 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~------g--vp-fi~is~s~~~~------------~~vG~~~~~vr~lF-~~A~~~a 425 (817)
-++|+|+||+|||++++.++..+ + .+ ++.+++.++.. .........+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999998764 1 12 23333333222 11111112222222 2334456
Q ss_pred CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCC
Q 003473 426 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 505 (817)
Q Consensus 426 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd 505 (817)
+.+|+||.+|.+....+. .........+.+++.. ....+.+++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 779999999998753221 0011122333444432 12223344443332222222222222 1478899999
Q ss_pred HHHHHHHHHHHHhc
Q 003473 506 KIGREAILKVHVSK 519 (817)
Q Consensus 506 ~~eR~~ILk~~l~~ 519 (817)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.20 E-value=6.9e-06 Score=88.79 Aligned_cols=139 Identities=20% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC-c--EEEeechhhHHHhhccchHHHHHHHHHH----H-------hcCCeEEEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA----K-------KEAPSIIFI 431 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gv-p--fi~is~s~~~~~~vG~~~~~vr~lF~~A----~-------~~aP~ILfI 431 (817)
.+++||+||+|||||++++..-.++.- . ...++++... .+..++.+.+.. + ....+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 346999999999999999998776542 2 2233333221 112222222211 0 123469999
Q ss_pred ccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC-------CcEEEEEEcCCCC---CCCcccCCCCccceEEEe
Q 003473 432 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-------SAVIVLGATNRSD---VLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 432 DEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-------~~VIVIaATN~pd---~LDpALlRpGRFdr~I~V 501 (817)
||+..-..+.- +.. ..-+.|.|++..---++.. .++.+|||+|.+. .|++.++| .|. .+.+
T Consensus 107 DDlN~p~~d~y-----gtq-~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKY-----GTQ-PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp ETTT-S---TT-----S---HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred cccCCCCCCCC-----CCc-CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 99987544331 111 1234555555442212211 3588889888542 46777777 553 7889
Q ss_pred eCCCHHHHHHHHHHHHhc
Q 003473 502 ETPDKIGREAILKVHVSK 519 (817)
Q Consensus 502 ~~Pd~~eR~~ILk~~l~~ 519 (817)
+.|+.+....|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999988887776653
No 250
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.20 E-value=7.2e-06 Score=92.02 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-cEEEeechhhHHHh------hccchHHHHHHHHHHHhcCCeEEEEcccc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELY------VGMGASRVRDLFARAKKEAPSIIFIDEID 435 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-pfi~is~s~~~~~~------vG~~~~~vr~lF~~A~~~aP~ILfIDEID 435 (817)
...|+|++||||+|+|||+|.-.+...+.. .-..+.-.+|+... .......+..+-+...... .||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~-~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKES-RLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcC-CEEEEeeee
Confidence 457999999999999999999999888754 11222223333210 0011122333333333332 399999986
Q ss_pred chhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHH
Q 003473 436 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 515 (817)
Q Consensus 436 aL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~ 515 (817)
-- +-.....+..|+..+= ..+|++|+|+|++ +..|. ++.+.+... .--.++|+.
T Consensus 138 V~------------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~---P~~Ly-~~gl~r~~F------lp~I~~l~~ 191 (362)
T PF03969_consen 138 VT------------DIADAMILKRLFEALF----KRGVVLVATSNRP---PEDLY-KNGLQRERF------LPFIDLLKR 191 (362)
T ss_pred cc------------chhHHHHHHHHHHHHH----HCCCEEEecCCCC---hHHHc-CCcccHHHH------HHHHHHHHh
Confidence 42 1111334555655543 3678999999985 22332 223222111 112455666
Q ss_pred HHhcCCCCCcccCCHHHH
Q 003473 516 HVSKKELPLAKDIDLGDI 533 (817)
Q Consensus 516 ~l~~~~l~l~~dvdl~~L 533 (817)
++.- +.++..+|....
T Consensus 192 ~~~v--v~ld~~~DyR~~ 207 (362)
T PF03969_consen 192 RCDV--VELDGGVDYRRR 207 (362)
T ss_pred ceEE--EEecCCCchhhh
Confidence 6643 345555666543
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=9e-06 Score=78.20 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=63.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh----------------------hcc--chHHHHHHHHHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----------------------VGM--GASRVRDLFARA 421 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~----------------------vG~--~~~~vr~lF~~A 421 (817)
++|+||||+|||++++.++..+ +.+++.++........ ... .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5666666654322210 000 011112234455
Q ss_pred HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 422 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
....|.+|+|||+..+....... .........+.+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 66778899999999886432100 01122333455555555544 23555666665443
No 252
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=1.7e-05 Score=101.23 Aligned_cols=179 Identities=20% Similarity=0.297 Sum_probs=101.1
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE---EEeec---hh
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSA---SE 401 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf---i~is~---s~ 401 (817)
+...+++++|.++..++|.+++.. .....+-+-|+||+|+|||+||+++++.....| +.++. ..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999998888876632 223355688999999999999999988764433 11110 00
Q ss_pred hHHHhh-----------ccchHHHH-------------HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHH
Q 003473 402 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 457 (817)
Q Consensus 402 ~~~~~v-----------G~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 457 (817)
..+.+. ......+. ...++.-...+.+|++|++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000001 1122222355778999998742 123
Q ss_pred HHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCccc-CC-HHHHHh
Q 003473 458 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-ID-LGDIAS 535 (817)
Q Consensus 458 n~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~d-vd-l~~LA~ 535 (817)
..+....+.+.. +..||.||...+ +++....++.+.++.|+.++..+++..++-+...+ .++ .+ ...+++
T Consensus 312 ~~L~~~~~~~~~--GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFGS--GSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCCC--CcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 334333333332 234444666443 22223457789999999999999999887543322 111 01 234566
Q ss_pred hcCCCC
Q 003473 536 MTTGFT 541 (817)
Q Consensus 536 ~t~G~S 541 (817)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 777765
No 253
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.05 E-value=1.6e-05 Score=81.65 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-HHhhc----------------------cchHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVG----------------------MGASRVRDL 417 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~-~~~vG----------------------~~~~~vr~l 417 (817)
+...-++++||||+|||+++..++.+. +.+.++++..++. +.... .....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 334448899999999999999988643 6677777775421 10000 001123444
Q ss_pred HHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 418 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 418 F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
.+.+.+..|++|+||-|.++....... ....+.+.+..++..|..+....++.+|.+..
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 444555679999999999986422110 11122223333333343333345666666644
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.03 E-value=1.4e-05 Score=90.61 Aligned_cols=233 Identities=21% Similarity=0.195 Sum_probs=124.4
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 412 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~ 412 (817)
-+|.|.+++|+.|.-++---.+...-..+-.+..-+|+|.|.||+-|+-|.+.+.+-+-.-.+...-. +.-+|.++.
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAA 418 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAA 418 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchh
Confidence 47899999999887655332111111122244556799999999999999999998775544432111 011333333
Q ss_pred HHHHHHHH-------HH-hcCCeEEEEccccchhhccCCccccccchHHHH-HHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 413 RVRDLFAR-------AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ-TLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 413 ~vr~lF~~-------A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~-~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
-+++-..- |. -..-.|.+|||+|.+..... ..-++..+| ++.---.-+. -.-+.+.-|+||+|...
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR----tAIHEVMEQQTISIaKAGI~-TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR----TAIHEVMEQQTISIAKAGIN-TTLNARTSILAAANPAY 493 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh----HHHHHHHHhhhhhhhhhccc-cchhhhHHhhhhcCccc
Confidence 33321110 00 01124889999999864321 122222222 2211111110 11245677888888632
Q ss_pred -------------CCCcccCCCCccceEEE-eeCCCHHHHHHHHHHH----HhcCCCCCc-ccCCHHHH------HhhcC
Q 003473 484 -------------VLDPALRRPGRFDRVVM-VETPDKIGREAILKVH----VSKKELPLA-KDIDLGDI------ASMTT 538 (817)
Q Consensus 484 -------------~LDpALlRpGRFdr~I~-V~~Pd~~eR~~ILk~~----l~~~~l~l~-~dvdl~~L------A~~t~ 538 (817)
.|++||++ |||...- .+.||.+.-+.+.++. ...+.-++. +.++.+.+ ++...
T Consensus 494 GRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~ 571 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKN 571 (721)
T ss_pred cccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcC
Confidence 57899999 9996553 4578776555444432 222111100 00121111 11111
Q ss_pred -----------------------------CCCHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHH
Q 003473 539 -----------------------------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 575 (817)
Q Consensus 539 -----------------------------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 575 (817)
-.|++-|-.+++.+...|..+-...|+.+|+.+|+.-
T Consensus 572 P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 572 PVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 2356667777777777776666677777777777743
No 255
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.02 E-value=2.5e-05 Score=85.82 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=119.3
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
+...|+.+++.....+.+.+-..- +.- ..-.+||.|..||||-++||+..... ..||+.++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k------~Am----lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK------LAM----LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH------hhc----cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 345688888877766655443222 111 11238999999999999999986644 68999999987654
Q ss_pred H-----hhccc--hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC-------CC
Q 003473 405 L-----YVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------SN 470 (817)
Q Consensus 405 ~-----~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~-------~~ 470 (817)
. ..|.. ...-..+|++|... .+|+|||..+.+.-| .-+-.+|+.-. |. -.
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ------------aKLLRFL~DGt-FRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ------------AKLLRFLNDGT-FRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH------------HHHHHHhcCCc-eeecCCcceEE
Confidence 2 22222 23456788888665 799999988764332 22233333210 11 12
Q ss_pred CcEEEEEEcCCC--CCCCcccCCCCccc--eEEEeeCCCHHHHH--------HHHHHHHhcCCCCCcccCC---HHHHHh
Q 003473 471 SAVIVLGATNRS--DVLDPALRRPGRFD--RVVMVETPDKIGRE--------AILKVHVSKKELPLAKDID---LGDIAS 535 (817)
Q Consensus 471 ~~VIVIaATN~p--d~LDpALlRpGRFd--r~I~V~~Pd~~eR~--------~ILk~~l~~~~l~l~~dvd---l~~LA~ 535 (817)
-.|.||+||..+ +..+..-.|..-|. .++.+..|...+|. -.+..+..+.+++.+ ..+ +..+.+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p-kl~~~~~~~L~~ 411 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP-KLAADLLTVLTR 411 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC-ccCHHHHHHHHH
Confidence 358999999765 22222222211121 26677778877764 233444555454432 222 344555
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 003473 536 MTTGFTGADLANLVNEAALLA 556 (817)
Q Consensus 536 ~t~G~SgaDL~~Lv~eAal~A 556 (817)
+-..-+.++|.|++-+|+-..
T Consensus 412 y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 412 YAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred cCCCccHHHHHHHHHHHHHHh
Confidence 554456789999988887554
No 256
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=7e-05 Score=80.10 Aligned_cols=174 Identities=22% Similarity=0.315 Sum_probs=89.1
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh--cCCc-----EEEeech----hhHHH---hhcc
Q 003473 344 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVEL---YVGM 409 (817)
Q Consensus 344 eL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e--~gvp-----fi~is~s----~~~~~---~vG~ 409 (817)
+++++.+.|.... ...+-|.|+|++|+|||+||+.++.. .... ++.++.. ++... ..+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4455555554421 34566899999999999999999977 3222 2232211 11111 1111
Q ss_pred ---------chHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 410 ---------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 410 ---------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
......+.+...-...+++|+||+++... .+..+...+..+. .+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 12223334444444559999999987642 1122222222111 2345555776
Q ss_pred CCCCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCC-CCcc-cCCHHHHHhhcCCCCHHHHHHH
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PLAK-DIDLGDIASMTTGFTGADLANL 548 (817)
Q Consensus 481 ~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l-~l~~-dvdl~~LA~~t~G~SgaDL~~L 548 (817)
...... ... .-+..+.++..+.++-.++++..+..... .... +-....|+..+.| .|-.|.-+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 543221 111 11468899999999999999998765431 0011 1124678888876 45444444
No 257
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00025 Score=75.37 Aligned_cols=185 Identities=23% Similarity=0.259 Sum_probs=113.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC---CcEEEeec-----hhhHHHhhccc------------hHHHHHHHHHHHh-cCCe
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-----SEFVELYVGMG------------ASRVRDLFARAKK-EAPS 427 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~g---vpfi~is~-----s~~~~~~vG~~------------~~~vr~lF~~A~~-~aP~ 427 (817)
+.++|+-|+|||+++||+...++ +-.++++. +.+.+.++.+. +..-+.+.+..++ ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 67899999999999998776653 22234433 33333222211 1222333443333 4568
Q ss_pred EEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCC------CccceEEEe
Q 003473 428 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVMV 501 (817)
Q Consensus 428 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRp------GRFdr~I~V 501 (817)
++++||.+.+..+. . ..+.-|.+.-+.+...-.|+.|+-. .|.+.+++| -|++-.|.+
T Consensus 134 ~l~vdEah~L~~~~---------l---e~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 134 VLMVDEAHDLNDSA---------L---EALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred EEeehhHhhhChhH---------H---HHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEec
Confidence 99999999885321 1 2222222222223333446666543 233333211 267766888
Q ss_pred eCCCHHHHHHHHHHHHhcCCC--CCcccCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhCCccccHHHHH
Q 003473 502 ETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 570 (817)
Q Consensus 502 ~~Pd~~eR~~ILk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 570 (817)
++.+.++-...++.+++.-+. ++..+-.+..+...+.| .++-+.+++..|...|...++..|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 888888889999999876432 33334346777888888 688999999999999998898888776543
No 258
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.92 E-value=1.7e-05 Score=92.73 Aligned_cols=206 Identities=23% Similarity=0.329 Sum_probs=118.7
Q ss_pred cCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc--CCcEEEeechhhHHH-----hhc
Q 003473 336 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVEL-----YVG 408 (817)
Q Consensus 336 ~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~--gvpfi~is~s~~~~~-----~vG 408 (817)
++.+...+.+...+..+... .-.+|+.|.|||||-.|||++-... .-||+.++|.-+-+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45555555554444333221 2249999999999999999996654 579999999765442 222
Q ss_pred cch--------HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhh-----ccCCCCCCcEEE
Q 003473 409 MGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDGFDSNSAVIV 475 (817)
Q Consensus 409 ~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-----mdg~~~~~~VIV 475 (817)
-.+ +-.+..+++|... .+|+|||..+.-.-| .-|-..|.+ +.+-...-.|-|
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~~Q------------s~LLrVl~e~~v~p~g~~~~~vdirv 450 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLALQ------------SRLLRVLQEGVVTPLGGTRIKVDIRV 450 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhchHHHH------------HHHHHHHhhCceeccCCcceeEEEEE
Confidence 211 2223334444333 899999988753221 112222222 222232345899
Q ss_pred EEEcCCCCCCCcccCCCCccce-------EEEeeCCCHHHHH---HHHHHHHhcCC---CCCcccCCHHHHHhhcCCCCH
Q 003473 476 LGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGRE---AILKVHVSKKE---LPLAKDIDLGDIASMTTGFTG 542 (817)
Q Consensus 476 IaATN~pd~LDpALlRpGRFdr-------~I~V~~Pd~~eR~---~ILk~~l~~~~---l~l~~dvdl~~LA~~t~G~Sg 542 (817)
|+||+++ -..|.+-|||.+ ...+.+|...+|. ..|..++.+++ +.++++. +..|...-..-+-
T Consensus 451 i~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WPGNi 526 (606)
T COG3284 451 IAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWPGNI 526 (606)
T ss_pred EeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCCCcH
Confidence 9999986 245667778764 3456678877764 34444444332 2333332 3333333333377
Q ss_pred HHHHHHHHHHHHHHHHhCCccccHHHHHHHH
Q 003473 543 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 573 (817)
Q Consensus 543 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 573 (817)
++|.+++..++..+ ....|...|+...+
T Consensus 527 rel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 527 RELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred HHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 89999988887665 33445555554444
No 259
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=5.9e-05 Score=82.18 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH--------Hh-hc----cchHHHHHHHHHHHhc----C
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--------LY-VG----MGASRVRDLFARAKKE----A 425 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~--------~~-vG----~~~~~vr~lF~~A~~~----a 425 (817)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+.. .+ .+ -+...+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 567888999999999999999999998754210111111100 00 11 1345667766665432 2
Q ss_pred CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCC
Q 003473 426 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 504 (817)
Q Consensus 426 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~P 504 (817)
..|++||++|.+.. +.-|.||..++. +..++++|..|+.++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 35999999999863 345889999884 55678888888889999999887 53 25555543
No 260
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.82 E-value=0.00014 Score=72.90 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=58.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----Hh--hccc-----------------------hH----
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LY--VGMG-----------------------AS---- 412 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~----~~--vG~~-----------------------~~---- 412 (817)
+|++||||||||+++..++.+. |.++++++..+-.+ .. .|.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 66777776532211 10 0100 00
Q ss_pred -HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 413 -RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 413 -~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
.+..+...+....|.+|+|||+..+... ........+..++..+... ++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~~~----g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALKRF----GVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHHHC----CCEEEEEeccc
Confidence 1233444445667999999999887532 1122233445555555422 34555555543
No 261
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00026 Score=77.33 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-------EEEee-chhhHH------Hhh---c--cchHHHHHHHHHHHh
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS-ASEFVE------LYV---G--MGASRVRDLFARAKK 423 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-------fi~is-~s~~~~------~~v---G--~~~~~vr~lF~~A~~ 423 (817)
.+.|..+||+|| +||+++|+++|..+-+. +-.|. |..+.. .++ | -....+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467888999996 68999999999876432 11111 111111 011 1 134567777766643
Q ss_pred c----CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEE
Q 003473 424 E----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 499 (817)
Q Consensus 424 ~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I 499 (817)
. ...|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|-|.+++ |. .+|
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2 235999999999853 345899999984 44567888888889999999988 53 377
Q ss_pred EeeCCCHHHHHHHHH
Q 003473 500 MVETPDKIGREAILK 514 (817)
Q Consensus 500 ~V~~Pd~~eR~~ILk 514 (817)
.|+. +.+...+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7755 4444444443
No 262
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.80 E-value=0.00016 Score=76.47 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 445 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 445 (817)
..|..++||+|||||..+|++|..+|.+++.++|++-.+ ...+..+|.-+... -+-+++||++.+...-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v---- 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV---- 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH----
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH----
Confidence 356789999999999999999999999999999987544 35667777666554 4589999999885321
Q ss_pred ccccchHHHHHHHHHHhhccCCC-----------CCCcEEEEEEcCC----CCCCCcccCCCCccceEEEeeCCCHHHHH
Q 003473 446 RIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGRE 510 (817)
Q Consensus 446 ~~~~~~e~~~~Ln~LL~emdg~~-----------~~~~VIVIaATN~----pd~LDpALlRpGRFdr~I~V~~Pd~~eR~ 510 (817)
...- .+.+..+...+..-. -+..+-++.|.|. ...|++.|+. +=|.|.+..||.....
T Consensus 101 LS~i----~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 101 LSVI----SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp HHHH----HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred HHHH----HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 0011 111222222221110 0122334445553 2467887765 3468999999976555
Q ss_pred HHHHHHHhcCCC
Q 003473 511 AILKVHVSKKEL 522 (817)
Q Consensus 511 ~ILk~~l~~~~l 522 (817)
+..+-..++
T Consensus 174 ---ei~L~s~GF 182 (231)
T PF12774_consen 174 ---EILLLSQGF 182 (231)
T ss_dssp ---HHHHHCCCT
T ss_pred ---HHHHHHcCc
Confidence 444444443
No 263
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.79 E-value=0.00015 Score=84.17 Aligned_cols=169 Identities=21% Similarity=0.291 Sum_probs=88.8
Q ss_pred cccCchHhHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccch
Q 003473 334 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 411 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~--Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~ 411 (817)
.|.|.+++|..+.-.+-- -+++.. .-..+.-.+|||+|.|||||+-+.|.+++-....++...-.. .-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeE
Confidence 477888888776543321 222211 111334556999999999999999999998877666532110 0112211
Q ss_pred HHH-----HHHHHHHHh---cCCeEEEEccccchhhccCCccccccchHHHHH-H----HHHHhhccCCCCCCcEEEEEE
Q 003473 412 SRV-----RDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-L----NQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 412 ~~v-----r~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-L----n~LL~emdg~~~~~~VIVIaA 478 (817)
... +++--+|-+ ....|.+|||+|.+...... .-++..+|. + ..+.+.+. .++.||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRt----SIHEAMEQQSISISKAGIVtsLq-----ArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRT----SIHEAMEQQSISISKAGIVTSLQ-----ARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccc----hHHHHHHhcchhhhhhhHHHHHH-----hhhhhhee
Confidence 111 111111110 11348899999998643221 122222221 0 01222222 45689999
Q ss_pred cCCC-----------C--CCCcccCCCCccceEEEeeC---CCHHHHH--HHHHHHHh
Q 003473 479 TNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGRE--AILKVHVS 518 (817)
Q Consensus 479 TN~p-----------d--~LDpALlRpGRFdr~I~V~~---Pd~~eR~--~ILk~~l~ 518 (817)
+|.. + .|-..+++ |||-...|.. |-.+++. -++..|.+
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 9862 1 34455666 9997666653 4444443 23444443
No 264
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.79 E-value=5.5e-05 Score=79.45 Aligned_cols=74 Identities=26% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh----------HHHhhccchHHHHHHHHHHHh--cCCeEEEE
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF----------VELYVGMGASRVRDLFARAKK--EAPSIIFI 431 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~----------~~~~vG~~~~~vr~lF~~A~~--~aP~ILfI 431 (817)
+.|..+||||+||+|||++|+.+++. ..++..+.+.- .+.-.......+.+.+..+.. ....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34667999999999999999999742 22233332110 000001112233343433332 34579999
Q ss_pred ccccchhh
Q 003473 432 DEIDAVAK 439 (817)
Q Consensus 432 DEIDaL~~ 439 (817)
|.|+.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99998765
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00049 Score=73.86 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCc-----EEEe-echhhHH------Hh--h---ccchHHHHHHHHHHHh---
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SASEFVE------LY--V---GMGASRVRDLFARAKK--- 423 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvp-----fi~i-s~s~~~~------~~--v---G~~~~~vr~lF~~A~~--- 423 (817)
.+|..+||+||+|+||..+|.++|..+-+. .-.| +|..+.. .+ . .-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999876332 1111 1111111 01 0 1234556666655432
Q ss_pred --cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEe
Q 003473 424 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 424 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V 501 (817)
....|++||++|.+.. ...|.||..++ ++..++++|..|+.++.|.|.+++ |.. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 2246999999999853 45689999998 455678899999999999999998 532 4555
Q ss_pred eCC
Q 003473 502 ETP 504 (817)
Q Consensus 502 ~~P 504 (817)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 554
No 266
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00023 Score=87.16 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=125.4
Q ss_pred cccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc----------CCcEEEeechh
Q 003473 332 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASE 401 (817)
Q Consensus 332 f~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~----------gvpfi~is~s~ 401 (817)
++-++|. .-++++.+++-|.. +..++-+|+|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 4566676 22334444444433 223678999999999999999999864 34566666654
Q ss_pred hHH--HhhccchHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 402 FVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 402 ~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
++. ++.|..+.+++++.+.+.. ...-||||||++-+...... .-.....|-|--.+. +.++-+|+|
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-------~~~~d~~nlLkp~L~----rg~l~~IGa 322 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-------YGAIDAANLLKPLLA----RGGLWCIGA 322 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-------chHHHHHHhhHHHHh----cCCeEEEec
Confidence 443 6778889999999999884 45568999999998755432 112223333333222 344889988
Q ss_pred cCCC-----CCCCcccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccC------CHHHHH--hhcCCCCHHHH
Q 003473 479 TNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI------DLGDIA--SMTTGFTGADL 545 (817)
Q Consensus 479 TN~p-----d~LDpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dv------dl~~LA--~~t~G~SgaDL 545 (817)
|..- -.=||++-| ||+ .+.|+.|+.+....||...-.+..++....+ ....+. ..+..|-+.-.
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~a 399 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCA 399 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhc
Confidence 8532 244899999 998 6678899988777777665544222111111 111122 23344555666
Q ss_pred HHHHHHHHHHHH
Q 003473 546 ANLVNEAALLAG 557 (817)
Q Consensus 546 ~~Lv~eAal~A~ 557 (817)
..++++|+....
T Consensus 400 idl~dEa~a~~~ 411 (898)
T KOG1051|consen 400 IDLEDEAAALVK 411 (898)
T ss_pred ccHHHHHHHHHh
Confidence 778888775553
No 267
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00052 Score=75.38 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=87.3
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------c--EEEeechhhHHHhhccchHHHHHHHHHHHh-----c
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----E 424 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-----------p--fi~is~s~~~~~~vG~~~~~vr~lF~~A~~-----~ 424 (817)
.+.+..+||+|+.|.||+.+|+++++.+-| | ++.++... .......++++.+.+.. .
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccC
Confidence 356677999999999999999999988632 1 22222000 01123456666665532 2
Q ss_pred CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCC
Q 003473 425 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 504 (817)
Q Consensus 425 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~P 504 (817)
...|++||++|.+.. +..|.||..++. +...+++|..|+.++.|-|.+++ | ..++.+.+|
T Consensus 90 ~~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~~~~f~~l 149 (299)
T PRK07132 90 QKKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQVFNVKEP 149 (299)
T ss_pred CceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eEEEECCCC
Confidence 456999999988742 345788888885 34556777777788899999887 4 347899999
Q ss_pred CHHHHHHHHHH
Q 003473 505 DKIGREAILKV 515 (817)
Q Consensus 505 d~~eR~~ILk~ 515 (817)
+.++..+.|..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 88887766553
No 268
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.73 E-value=0.00014 Score=80.36 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred chHhHHHHHHHHHHhcChhHH----hhhC---CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE-EEeechhhHHH----
Q 003473 338 VDEAKEELEEIVEFLRSPDKY----IRLG---ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVEL---- 405 (817)
Q Consensus 338 ~eeaKeeL~eiV~~Lk~p~~~----~~lg---~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf-i~is~s~~~~~---- 405 (817)
+..+.+.|.++.+.+..+..- ..+. ..+|+|+.||||-|.|||+|.-.....+..+- ..+.-..|+..
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 455556666666643333211 1122 34789999999999999999999988775433 33333344321
Q ss_pred ---hhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 406 ---YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 406 ---~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
..|.. .-+..+-+...+. -.||+|||+.- .+-....+|..|+.++= ..+|++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAAE-TRVLCFDEFEV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHhc-CCEEEeeeeee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 22222 1111111222222 23999999853 11112345666666654 2589999999974
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.72 E-value=8.5e-05 Score=68.96 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAE 391 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~g 391 (817)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 270
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.69 E-value=1.2e-05 Score=73.39 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.1
Q ss_pred CcceeeehHHHHHHHHcCCccEEEEeCcEEE
Q 003473 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (817)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (817)
+...+++||+|+++|++|+|++|++.++.+.
T Consensus 25 ~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp -SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 4566899999999999999999999987666
No 271
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.69 E-value=0.00019 Score=81.99 Aligned_cols=208 Identities=24% Similarity=0.333 Sum_probs=103.3
Q ss_pred cccCchHhHHHHHHHHHHhcChhHH-hhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 412 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~ 412 (817)
.|.|.+++|+.+.-++-- -..+.+ ..+-.+..-+|||-|.|||-|+-|.|-+-.-+-+-++. |+.. +.-.|.+++
T Consensus 332 SIfG~~DiKkAiaClLFg-GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG-GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhc-CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceee
Confidence 477888888876544321 111100 01123445569999999999999999987655443332 2110 000111111
Q ss_pred HHHHH-----HHH--HH-hcCCeEEEEccccchhhccCCccccccchHHH-HHHHHHHhhccCCCCCCcEEEEEEcCCC-
Q 003473 413 RVRDL-----FAR--AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE-QTLNQLLTEMDGFDSNSAVIVLGATNRS- 482 (817)
Q Consensus 413 ~vr~l-----F~~--A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~-~~Ln~LL~emdg~~~~~~VIVIaATN~p- 482 (817)
-+|+- +-+ |. -..-.|++|||+|.+-.... -.-++..+ |++.---.-+- -.-+++.-|+||+|.+
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR----VAIHEAMEQQTISIAKAGIT-T~LNSRtSVLAAANpvf 482 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR----VAIHEAMEQQTISIAKAGIT-TTLNSRTSVLAAANPVF 482 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCchhh----hHHHHHHHhhhHHHhhhcce-eeecchhhhhhhcCCcc
Confidence 11110 000 00 01134999999999843211 11222222 23322111111 1124667788999864
Q ss_pred ----------CCCC--cccCCCCccceEEEeeCCCHHHHH-----HHHHHHHhcCCCCCc------ccCCHHHHHh----
Q 003473 483 ----------DVLD--PALRRPGRFDRVVMVETPDKIGRE-----AILKVHVSKKELPLA------KDIDLGDIAS---- 535 (817)
Q Consensus 483 ----------d~LD--pALlRpGRFdr~I~V~~Pd~~eR~-----~ILk~~l~~~~l~l~------~dvdl~~LA~---- 535 (817)
+.|| +.+++ |||..+-|..-..++|- .++..|..+.+..-+ ..+.++.+-+
T Consensus 483 GRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Y 560 (729)
T KOG0481|consen 483 GRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQY 560 (729)
T ss_pred ccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHH
Confidence 2343 77888 99998888765555443 344445542222111 1233333322
Q ss_pred ----hcCCCCHHHHHHHHHHH
Q 003473 536 ----MTTGFTGADLANLVNEA 552 (817)
Q Consensus 536 ----~t~G~SgaDL~~Lv~eA 552 (817)
-.+.+|...-++|.+..
T Consensus 561 cR~kc~PrLs~~AaekL~~~y 581 (729)
T KOG0481|consen 561 CRLKCGPRLSAEAAEKLSSRY 581 (729)
T ss_pred HHhccCCCCCHHHHHHHHHHH
Confidence 23456776666666554
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.69 E-value=0.00015 Score=75.44 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH----HHhhcc-------------------chHHHH
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVGM-------------------GASRVR 415 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~----~~~vG~-------------------~~~~vr 415 (817)
|.+...-++++||||+|||++|..+|.+. +.++++++...+. ...... ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 34444558999999999999999998744 6777777776221 100000 001122
Q ss_pred HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 416 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 416 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
.+..... ..+++|+||-+.++.+..... .....+..+.+..++..+..+....++.||.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~--~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED--EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222222 578899999999886432100 0122233334444443333333344566665543
No 273
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.68 E-value=5e-05 Score=93.14 Aligned_cols=207 Identities=17% Similarity=0.231 Sum_probs=125.0
Q ss_pred cCCCccccccccCchHhHHHHHHHHHHhcChhH--HhhhCCCC-CC-eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003473 325 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDK--YIRLGARP-PR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 400 (817)
Q Consensus 325 ~~~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~--~~~lg~~~-pk-gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s 400 (817)
+........++.|.......+.+-++..++++. |...+-.. -. .+|++||||+|||+.|.++|.+.|..++..+.+
T Consensus 312 ~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas 391 (871)
T KOG1968|consen 312 EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNAS 391 (871)
T ss_pred cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcc
Confidence 444555567777776665555554444433211 11111111 11 369999999999999999999999999999988
Q ss_pred hhHHHhhc-----c--chHHHHHHHH---HHHh-cCC-eEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCC
Q 003473 401 EFVELYVG-----M--GASRVRDLFA---RAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 468 (817)
Q Consensus 401 ~~~~~~vG-----~--~~~~vr~lF~---~A~~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~ 468 (817)
+....+.. . +...+...|. .... +.+ -||++||+|.+.....+ .-+.+.++..
T Consensus 392 ~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg---------~v~~l~~l~~------ 456 (871)
T KOG1968|consen 392 DVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRG---------GVSKLSSLCK------ 456 (871)
T ss_pred ccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhh---------hHHHHHHHHH------
Confidence 66543211 1 1222333331 1111 112 28999999998751110 0122333333
Q ss_pred CCCcEEEEEEcCCCCCCCc-ccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHH
Q 003473 469 SNSAVIVLGATNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 547 (817)
Q Consensus 469 ~~~~VIVIaATN~pd~LDp-ALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 547 (817)
...+-+|+++|..+.... ++. |-+..++|..|+...+..-+...+....+.+.++ .++.+...+ ++||++
T Consensus 457 -ks~~Piv~~cndr~~p~sr~~~---~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 457 -KSSRPLVCTCNDRNLPKSRALS---RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQ 527 (871)
T ss_pred -hccCCeEEEecCCCCccccchh---hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHH
Confidence 233456677776654444 333 3335689999999999988888887777766655 467777665 668888
Q ss_pred HHHHHHHH
Q 003473 548 LVNEAALL 555 (817)
Q Consensus 548 Lv~eAal~ 555 (817)
+++.-...
T Consensus 528 ~i~~lq~~ 535 (871)
T KOG1968|consen 528 IIMQLQFW 535 (871)
T ss_pred HHHHHhhh
Confidence 88776555
No 274
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.67 E-value=0.00011 Score=79.39 Aligned_cols=113 Identities=23% Similarity=0.374 Sum_probs=67.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC----------CcEEEee-chhhHHHhhc-------------cchHHHHHHHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVG-------------MGASRVRDLFARAK 422 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g----------vpfi~is-~s~~~~~~vG-------------~~~~~vr~lF~~A~ 422 (817)
++++|.||||+|||+|.+++++... .++..++ ..++...+.+ ........++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2222222 1233221111 11122345666777
Q ss_pred hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcc--------cCCCCc
Q 003473 423 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 494 (817)
Q Consensus 423 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA--------LlRpGR 494 (817)
.+.|.||++||+.. ...+..++..+. .++.+|++|+.++. ... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCc
Confidence 78999999999621 122344444443 35677888875432 222 233456
Q ss_pred cceEEEee
Q 003473 495 FDRVVMVE 502 (817)
Q Consensus 495 Fdr~I~V~ 502 (817)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77777764
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.66 E-value=0.00015 Score=71.38 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
.++..|+|+||||||||++|+++|..++.+|+..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999998643
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.0002 Score=79.16 Aligned_cols=117 Identities=20% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH----hhc------------cchHHHHHHHHHHHh
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVG------------MGASRVRDLFARAKK 423 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~----~vG------------~~~~~vr~lF~~A~~ 423 (817)
.+..+-++++||||||||+||-.++.++ |.++++++..+..+. ..| ..+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3444458899999999999988876554 667777766443221 011 112223333333456
Q ss_pred cCCeEEEEccccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 424 EAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 424 ~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
..+++|+||-+.++.+... +...........+.+++++..+.+.-...++.+|.+.
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7789999999999875321 1100001112234445555555554445666777664
No 277
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.60 E-value=0.00036 Score=72.23 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
.....-++++||||+|||+++..+|.+. +.++++++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3344448999999999999999998764 5677777553
No 278
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.59 E-value=0.00031 Score=81.11 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc--------chHHHHHHHHHHHhc
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 424 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 424 (817)
|..+..-++|+||||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+..+++..+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444558999999999999999998765 6788888876543321 111 122356677777778
Q ss_pred CCeEEEEccccchhhc
Q 003473 425 APSIIFIDEIDAVAKS 440 (817)
Q Consensus 425 aP~ILfIDEIDaL~~~ 440 (817)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 279
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=5.4e-05 Score=70.58 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
|+|+||||+||||+|+.||..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877554
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=0.00014 Score=73.00 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 399 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~ 399 (817)
.|+++||||+||||+|+.|++.+++|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988775
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.54 E-value=0.00072 Score=71.38 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechh----hHHHh--hcc------------------------
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELY--VGM------------------------ 409 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~----~~~~~--vG~------------------------ 409 (817)
.+...-++++||||||||++|..++... |.+.++++..+ +.... .|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4445569999999999999986554432 56666666432 11110 000
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEccccchh
Q 003473 410 -GASRVRDLFARAKKEAPSIIFIDEIDAVA 438 (817)
Q Consensus 410 -~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 438 (817)
....+..+...+....|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233445555555678899999998764
No 282
>PHA00729 NTP-binding motif containing protein
Probab=97.51 E-value=0.00018 Score=75.83 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE 391 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g 391 (817)
.+++|+|+||||||+||.++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 283
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.51 E-value=0.00046 Score=71.27 Aligned_cols=104 Identities=21% Similarity=0.361 Sum_probs=59.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh-----cCCcE-------------EEeechhhHH----HhhccchHHHHHHHHHHHhc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKKE 424 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e-----~gvpf-------------i~is~s~~~~----~~vG~~~~~vr~lF~~A~~~ 424 (817)
+-++|.||+|+|||+|.|.++.. .|.++ ..++..+-+. .+. ....++.++++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 56899999999999999999853 34432 1111111111 111 1124567777776656
Q ss_pred CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003473 425 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 485 (817)
Q Consensus 425 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 485 (817)
.|.+|++||.-+=. ...........++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT----------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC----------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 89999999974311 112222334445555531 234666778776543
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00075 Score=67.43 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.+.-++++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 44569999999999999999999865
No 285
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0014 Score=74.74 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=80.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCcccc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 447 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 447 (817)
-++|+||.+||||++++.+.....-.++.++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888775556666555544322111 112222222222244699999998763
Q ss_pred ccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHHHHHH-------------HHH
Q 003473 448 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 514 (817)
Q Consensus 448 ~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~eR~~-------------ILk 514 (817)
.+...+..+..... . .|++.+++...-....+-.=+|| ...+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 34566666654432 1 34444443322222333334678 4577888888888754 466
Q ss_pred HHHhcCCCC
Q 003473 515 VHVSKKELP 523 (817)
Q Consensus 515 ~~l~~~~l~ 523 (817)
.++...++|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666655554
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.50 E-value=0.00047 Score=77.87 Aligned_cols=78 Identities=28% Similarity=0.407 Sum_probs=54.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH------hhcc--------chHHHHHHHHHHHhcC
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL------YVGM--------GASRVRDLFARAKKEA 425 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~------~vG~--------~~~~vr~lF~~A~~~a 425 (817)
..+..-++|+||||+|||+|+..+|... +.++++++..+-.+. ..|. .+..+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4444558999999999999999998764 457777776542221 1111 1233566777777788
Q ss_pred CeEEEEccccchhhc
Q 003473 426 PSIIFIDEIDAVAKS 440 (817)
Q Consensus 426 P~ILfIDEIDaL~~~ 440 (817)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.49 E-value=0.00012 Score=85.80 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=44.6
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeec
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 399 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~-gvpfi~is~ 399 (817)
-|+|+.|++++++.+.+.+. .. ...++. ..+-++|+||||+|||+||++||.-+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~---~A--a~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR---HA--AQGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH---HH--HHhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 48999999999987766542 21 111222 23468999999999999999999866 346666544
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.47 E-value=0.00063 Score=71.43 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 400 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~s 400 (817)
|.+.+..++++||||||||+++..++.+ .|.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4555666999999999999999999754 36677777653
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0011 Score=75.34 Aligned_cols=131 Identities=14% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc-------CCc--EEEeechhh-----HHHh---------hccchHHHHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVP--FISCSASEF-----VELY---------VGMGASRVRDLFAR 420 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~-------gvp--fi~is~s~~-----~~~~---------vG~~~~~vr~lF~~ 420 (817)
..|+.++|+||+|+|||+++..+|..+ +.. ++.+++-.. ...| .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 233 444443211 1111 11122333444433
Q ss_pred HHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCC-CcEEEEEEcCCCCCCCcccCCC--Cccce
Q 003473 421 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRP--GRFDR 497 (817)
Q Consensus 421 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~-~~VIVIaATN~pd~LDpALlRp--GRFdr 497 (817)
. ....+|+||++..... +.. .+..+...++..... ..++|+.+|.....+...+.+- -.++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------DFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------CHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3456999999976531 111 133444444433322 5678888887766665444321 1234
Q ss_pred EEEeeCCCHHHHH
Q 003473 498 VVMVETPDKIGRE 510 (817)
Q Consensus 498 ~I~V~~Pd~~eR~ 510 (817)
.+.+...|...+.
T Consensus 316 ~~I~TKlDet~~~ 328 (388)
T PRK12723 316 TVIFTKLDETTCV 328 (388)
T ss_pred EEEEEeccCCCcc
Confidence 3445555554443
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.46 E-value=0.00042 Score=76.80 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-h---hc------------cchHHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAKKE 424 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-~---vG------------~~~~~vr~lF~~A~~~ 424 (817)
+..+-+.++||||||||+||-.++.++ |.++++++...-.+. + .| ..+..+..+-..++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 334448899999999999999887543 667777776432221 0 11 1122222222334567
Q ss_pred CCeEEEEccccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 425 APSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 425 aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.+++|+||-+-++.+... +...........+.+.+.+..+.+.....++.+|.+.
T Consensus 133 ~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 133 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred CCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 789999999999875321 1100000111223344555544444344556666553
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.45 E-value=0.0016 Score=74.97 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 467889999999999999999998765 4555555543
No 292
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.45 E-value=0.002 Score=73.40 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccchhh
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK 439 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e----~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 439 (817)
..++++.||||||||++|.+++.. .| -.++.+.++.... . ..+.. -....+|+|||+..+.-
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcC
Confidence 357999999999999999998776 24 2223333332110 1 11111 13456999999988653
No 293
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.45 E-value=0.00017 Score=73.80 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred EEEEcCCCCcHHHHHHHH-HHh---cCCcEEEeechhhH-HHhhc---cchH-------------HHHHHHHHHHhcCCe
Q 003473 369 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFV-ELYVG---MGAS-------------RVRDLFARAKKEAPS 427 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkAL-A~e---~gvpfi~is~s~~~-~~~vG---~~~~-------------~vr~lF~~A~~~aP~ 427 (817)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988666 433 3777665 433221 11000 0000 001112221112467
Q ss_pred EEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCC
Q 003473 428 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 505 (817)
Q Consensus 428 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd 505 (817)
+|+|||++.+.+.+... .......+ +.+.+.. ..++-||.+|..+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998876531 01112233 3344333 4567888899999999999976 778888776653
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.44 E-value=0.00043 Score=66.22 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHh
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 406 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~ 406 (817)
|+++||||+|||++|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 78999999999999999999999 4556666665543
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00024 Score=71.45 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=29.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~ 401 (817)
|+++|+||+|||+||+.++...+.|++..+.-.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 899999999999999999999999988876533
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00033 Score=79.04 Aligned_cols=110 Identities=18% Similarity=0.344 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechhh-------HHH---hhcc------chHHHHHHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARAK 422 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~----g-vpfi~is~s~~-------~~~---~vG~------~~~~vr~lF~~A~ 422 (817)
.....++|+||+|+|||+++..+|..+ | ..+..++...+ ... ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 345679999999999999999999763 3 23433443332 111 1121 111222323322
Q ss_pred hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC-CCcEEEEEEcCCCCCCCccc
Q 003473 423 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPAL 489 (817)
Q Consensus 423 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIVIaATN~pd~LDpAL 489 (817)
...++|+||....... + ..+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 214 -~~~DlVLIDTaG~~~~----------d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQR----------D----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -cCCCEEEEcCCCCCcc----------c----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 3457999998854321 1 223444444443332 34578888888776665443
No 297
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.36 E-value=0.0019 Score=69.14 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEV 392 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gv 392 (817)
..-++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345999999999999999999987754
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.35 E-value=0.00067 Score=69.86 Aligned_cols=66 Identities=24% Similarity=0.421 Sum_probs=42.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC----cEEEeec-hhhHH---------HhhccchHHHHHHHHHHHhcCCeEEEEccc
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDEI 434 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gv----pfi~is~-s~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 434 (817)
++++||+|+|||++++++++.... .++.+.. .++.. .-+|.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 789999999999999999887642 2222211 11110 011222234556667777778999999998
No 299
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.32 E-value=0.00085 Score=75.86 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeechhh-------HHH---------hhccchHHHH---HHHHHHHh-
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VEL---------YVGMGASRVR---DLFARAKK- 423 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~g-----vpfi~is~s~~-------~~~---------~vG~~~~~vr---~lF~~A~~- 423 (817)
.||+||||+|||+|++.|++... +.++.+-..+. ... +......+++ ..++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998663 33332222222 111 1111222333 34444433
Q ss_pred ---cCCeEEEEccccchhhcc
Q 003473 424 ---EAPSIIFIDEIDAVAKSR 441 (817)
Q Consensus 424 ---~aP~ILfIDEIDaL~~~r 441 (817)
....+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 356799999999987643
No 300
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.31 E-value=0.00019 Score=76.82 Aligned_cols=100 Identities=23% Similarity=0.327 Sum_probs=63.1
Q ss_pred CCccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeec-hhh
Q 003473 327 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSA-SEF 402 (817)
Q Consensus 327 ~~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---fi~is~-s~~ 402 (817)
....+++++.-.....+.+.+++.... +...++++.||+|+|||++++++..+..-. ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 345688888877777666666655431 223579999999999999999999987433 333321 111
Q ss_pred HHH------hh-ccchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 403 VEL------YV-GMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 403 ~~~------~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
.-. +. ........+++..+....|++|+|+||..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 00 12344577888888889999999999953
No 301
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.29 E-value=0.0012 Score=68.82 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhH----HH----------hh------------c---
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV----EL----------YV------------G--- 408 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~----~~----------~v------------G--- 408 (817)
|.+....+|++||||||||+|+..++.+. |-++++++..+-. +. +. .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 45556669999999999999999876433 7787777653221 10 00 0
Q ss_pred ----cchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 409 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 409 ----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
.....+..+.+..+...+++++||-+..+. .. .........+..+...+. ..++.+|.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~------~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY------DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS------SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc------CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011223334444455678899999999982 21 123344556666766664 23444444544
No 302
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.28 E-value=0.003 Score=68.71 Aligned_cols=93 Identities=26% Similarity=0.325 Sum_probs=59.8
Q ss_pred cccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh-----
Q 003473 334 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV----- 407 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~v----- 407 (817)
.+.|+.-+++.+-..+.. +.++. -+.|--+=|+|+|||||.+.++.||+.+...- .-|.++.+|+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccC
Confidence 478999998887666654 44432 34566666899999999999999999762111 1123333332
Q ss_pred ----------ccchHHHHHHHHHHHhcCCeEEEEccccchh
Q 003473 408 ----------GMGASRVRDLFARAKKEAPSIIFIDEIDAVA 438 (817)
Q Consensus 408 ----------G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 438 (817)
.+-...+++ .+.....+|+++||.|.+.
T Consensus 154 P~~~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred CChHHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 222233333 3345556699999999985
No 303
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.27 E-value=0.0014 Score=60.29 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887765
No 304
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.26 E-value=0.00084 Score=70.05 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh------HHHh--hc---------------c
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VG---------------M 409 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~~------~~~~--vG---------------~ 409 (817)
|.+...-+.|+||||||||+++..+|... +...++++..+- .+.. .+ .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34445558899999999999999998543 256677765431 1100 00 0
Q ss_pred ch----HHHHHHHHHHHhc-CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 410 GA----SRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 410 ~~----~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.. ..+..+-...... .+++|+||-+.++....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 01 1112222223345 78999999999875421100 001134445566666666555444556666554
No 305
>PRK06762 hypothetical protein; Provisional
Probab=97.26 E-value=0.001 Score=65.76 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5668999999999999999999998666777777666553
No 306
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.00072 Score=70.12 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---C------CcEEEeechhh------HHHhh--c---------------c
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEF------VELYV--G---------------M 409 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---g------vpfi~is~s~~------~~~~v--G---------------~ 409 (817)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+- ..... + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34445558899999999999999998753 2 55666665431 11000 0 0
Q ss_pred chHHHHHHHHHH----HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 410 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 410 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24578899999999886532110 001234445666666666655445566666554
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=97.24 E-value=0.0015 Score=72.93 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHh---hc----------cchHHHHHHHHHH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARA 421 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~-------~~~---vG----------~~~~~vr~lF~~A 421 (817)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+. ..| .| .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888754 4455445443221 111 11 0112234445555
Q ss_pred HhcCCeEEEEccccch
Q 003473 422 KKEAPSIIFIDEIDAV 437 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL 437 (817)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999988655
No 308
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.24 E-value=0.0016 Score=82.21 Aligned_cols=136 Identities=29% Similarity=0.351 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH---HHhh----cc--chHHHH-HHHHHHHhcCCeEEEEcccc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV---ELYV----GM--GASRVR-DLFARAKKEAPSIIFIDEID 435 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~---~~~v----G~--~~~~vr-~lF~~A~~~aP~ILfIDEID 435 (817)
.+++||.|.||+|||+|..|+|++.|-.++.|+.++-. +.+- ++ |+-+.+ .-|-.|.+..- -|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~-WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG-WVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC-EEEeehhh
Confidence 45699999999999999999999999999999987533 3221 11 111221 22444444333 78999996
Q ss_pred chhhccCCccccccchHHHHHHHHHHh--------hcc-CCCCCCcEEEEEEcCCC------CCCCcccCCCCccceEEE
Q 003473 436 AVAKSRDGRFRIVSNDEREQTLNQLLT--------EMD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 500 (817)
Q Consensus 436 aL~~~r~~~~~~~~~~e~~~~Ln~LL~--------emd-g~~~~~~VIVIaATN~p------d~LDpALlRpGRFdr~I~ 500 (817)
--..+ .-.-||..|. ++| .|.-+.+..|+||-|.. ..|+..++. ||. +|.
T Consensus 1622 LaSQS------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LASQS------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhHHH------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 43211 1122333333 232 23446678899888864 368888887 897 788
Q ss_pred eeCCCHHHHHHHHHHHH
Q 003473 501 VETPDKIGREAILKVHV 517 (817)
Q Consensus 501 V~~Pd~~eR~~ILk~~l 517 (817)
++....++...|+....
T Consensus 1687 ~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1687 MDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ecccccchHHHHHHhhC
Confidence 88888888887777654
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.22 E-value=0.0007 Score=67.39 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=62.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHHhhc-----cchHHHHHHHHHHHhcCCe
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVELYVG-----MGASRVRDLFARAKKEAPS 427 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~--------~~~~~vG-----~~~~~vr~lF~~A~~~aP~ 427 (817)
..+...+.|.||+|+|||+|.+.+++.... --+.++..+ .....++ .+..+.+-.+..|-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 344556899999999999999999987521 012222111 1111111 1123445556677778899
Q ss_pred EEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 428 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 428 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
|+++||-.. +.+....+.+.+++.++.. . +..+|.+|+..+
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 999999753 2344555666666666531 2 334555666554
No 310
>PRK04040 adenylate kinase; Provisional
Probab=97.21 E-value=0.0041 Score=63.77 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--CCcEEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 396 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~--gvpfi~ 396 (817)
|+-++++|+||||||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5679999999999999999999999 666543
No 311
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.21 E-value=0.0027 Score=67.09 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechh
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 401 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~s~ 401 (817)
|.++...+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5556667999999999999999876554 367777776543
No 312
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00044 Score=73.44 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e 389 (817)
-|-|.||+|||||||.+.+|+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999984
No 313
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.20 E-value=0.0025 Score=66.52 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH-----hcCCcEEE--------------eechhhHHHhhccchHHHHHHHHH-HHhcC
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAG-----EAEVPFIS--------------CSASEFVELYVGMGASRVRDLFAR-AKKEA 425 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~-----e~gvpfi~--------------is~s~~~~~~vG~~~~~vr~lF~~-A~~~a 425 (817)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-...........++.+-.. +....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999983 33432211 111111111111222233333222 22356
Q ss_pred CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcc
Q 003473 426 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 488 (817)
Q Consensus 426 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpA 488 (817)
|++++|||+..-. ...+....+..++..+-.. ...+..+|.+|+..+.+...
T Consensus 109 ~slvllDE~~~gt----------d~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGT----------DTEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhh
Confidence 8899999986421 1122233444455544211 11234666788876654443
No 314
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.0013 Score=67.30 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
++|..|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 46788999999999999999999999999998665
No 315
>PF14516 AAA_35: AAA-like domain
Probab=97.19 E-value=0.019 Score=63.90 Aligned_cols=172 Identities=12% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH-------Hhh-----------c-------------cch
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LYV-----------G-------------MGA 411 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~-------~~v-----------G-------------~~~ 411 (817)
..-+.+.||..+|||++...+...+ |...+++++..+-. .+. + ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4458999999999999999987654 67777777654211 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc-CCCCCCCc
Q 003473 412 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-NRSDVLDP 487 (817)
Q Consensus 412 ~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT-N~pd~LDp 487 (817)
......|+.. ....|-||+|||||.+..... ..+..-..+..+...-........+.+|.+. ..+.....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2233444432 224688999999999974321 1111112222222211111111233333332 22222222
Q ss_pred ccCCCCccceEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCCHHHHHHHH
Q 003473 488 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 549 (817)
Q Consensus 488 ALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv 549 (817)
.-.+|-.+...|.++..+.++...+++.|- ..+.... ++.|-..|.|. |.=+..+|
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh-P~Lv~~~~ 240 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH-PYLVQKAC 240 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC-HHHHHHHH
Confidence 224554455577777788888888877763 2333333 78888888884 43333333
No 316
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.0014 Score=70.32 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred ccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003473 331 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 331 tf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e 389 (817)
.+.-+.+.......+...+ .+. .-+++.||+|||||+||.++|.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al---~~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAI---ESK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHH---hcC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 3444555666555544433 221 25899999999999999999885
No 317
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.18 E-value=0.0075 Score=65.91 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 391 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~g 391 (817)
..|..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999987663
No 318
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.15 E-value=0.00075 Score=65.39 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 408 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG 408 (817)
+|+|+||||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999988554 44444333
No 319
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.14 E-value=0.00029 Score=69.93 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=36.8
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc---EEEeechhh
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 402 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp---fi~is~s~~ 402 (817)
++|.++..++|...+.. . ....++.++|+|++|+|||++.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888887777776641 1 23456789999999999999999997766333 777776655
No 320
>PRK13947 shikimate kinase; Provisional
Probab=97.14 E-value=0.00042 Score=68.75 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
+|+|.|+||||||++|+.+|..+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 321
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.11 E-value=0.0012 Score=63.51 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=40.3
Q ss_pred ccccCchHhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 333 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~-Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
..|.|++-|++.+...+.. +.++ .-+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5789999999988777655 4442 23445556699999999999999999985
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.11 E-value=0.00055 Score=69.61 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcC--CcEEEeech-hhHH---Hh----------hccchHHHHHHHHHHHhcCCeE
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFVE---LY----------VGMGASRVRDLFARAKKEAPSI 428 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~g--vpfi~is~s-~~~~---~~----------vG~~~~~vr~lF~~A~~~aP~I 428 (817)
....++|.||+|+|||++++++++... ...+.+... ++.- .+ .+.....+.++++.+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 455799999999999999999998753 122222111 1100 00 0112234667777888889999
Q ss_pred EEEcccc
Q 003473 429 IFIDEID 435 (817)
Q Consensus 429 LfIDEID 435 (817)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999993
No 323
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.11 E-value=0.003 Score=70.87 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--EEeechhhHHHh--------hccch-----------HHHHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASEFVELY--------VGMGA-----------SRVRDLFARA 421 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf--i~is~s~~~~~~--------vG~~~-----------~~vr~lF~~A 421 (817)
-.+|+|++|||.-|||||+|.-..-..+.... -.+...+|+... ...++ .-+.-+-.+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e- 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE- 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH-
Confidence 45699999999999999999998875542100 112222332210 00000 000001111
Q ss_pred HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-CCCCcccCCCCccceEEE
Q 003473 422 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVM 500 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~LDpALlRpGRFdr~I~ 500 (817)
-....++|++||+.-- +-...-+|+.|...+= +.+|+++||+||. +.|-..=+ .|...
T Consensus 190 Ia~ea~lLCFDEfQVT------------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGl-----QR~~F 248 (467)
T KOG2383|consen 190 IAEEAILLCFDEFQVT------------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGL-----QRENF 248 (467)
T ss_pred Hhhhceeeeechhhhh------------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcch-----hhhhh
Confidence 1123469999998532 1111234555555543 2589999999985 44432211 22333
Q ss_pred eeCCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcC---CCCH-HHHHHHHHHHH
Q 003473 501 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT---GFTG-ADLANLVNEAA 553 (817)
Q Consensus 501 V~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~---G~Sg-aDL~~Lv~eAa 553 (817)
++ -..+|+.++.- +.++..+|....+.... -|.+ .|...++++-.
T Consensus 249 ~P------fI~~L~~rc~v--i~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKV--IQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheE--EecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 32 35677777754 45677788883332211 1333 38888887766
No 324
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.10 E-value=0.00094 Score=68.74 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=52.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH----HhhccchHHHHHHHHHHH---------hcCCeEEE
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMGASRVRDLFARAK---------KEAPSIIF 430 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~----~~vG~~~~~vr~lF~~A~---------~~aP~ILf 430 (817)
+-+++.||||||||++++.++..+ +..++.+..+.-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999986543 66776665532211 111222222333222211 12236999
Q ss_pred EccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 431 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 431 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
|||+-.+.. ..+..++..+.. ...++++++=.+.
T Consensus 99 VDEasmv~~---------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS---------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH---------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH---------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999987642 245566666553 2456777776553
No 325
>PRK13946 shikimate kinase; Provisional
Probab=97.10 E-value=0.0013 Score=66.79 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 399 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~ 399 (817)
.++.|+|.|+||||||++++.+|..+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45679999999999999999999999999987653
No 326
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.10 E-value=0.0011 Score=74.11 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC----cEEEeec-hhhHH---------HhhccchHHHHHHHHHHHhcCCeEEEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFI 431 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gv----pfi~is~-s~~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfI 431 (817)
...++++||+|+|||++.+++.+...- .++.+.- .++.. .-+|.......+.++.+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 345899999999999999999986642 2333211 11110 112222234566777778889999999
Q ss_pred cccc
Q 003473 432 DEID 435 (817)
Q Consensus 432 DEID 435 (817)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
No 327
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.09 E-value=0.00044 Score=75.88 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechhhHHH----------hhccchHHHHHHHHHHHhcCCeEEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVEL----------YVGMGASRVRDLFARAKKEAPSIIF 430 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~~~~~----------~vG~~~~~vr~lF~~A~~~aP~ILf 430 (817)
.++++++||+|+|||++++++++.. +..++.+. +-.+. ........+.++++.+..+.|..|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE--d~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~ii 209 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE--DTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRII 209 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC--CchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEE
Confidence 3579999999999999999999876 22333332 22221 1122222577888899999999999
Q ss_pred Ecccc
Q 003473 431 IDEID 435 (817)
Q Consensus 431 IDEID 435 (817)
+.|+-
T Consensus 210 vGEiR 214 (299)
T TIGR02782 210 VGEVR 214 (299)
T ss_pred EeccC
Confidence 99984
No 328
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.07 E-value=0.0009 Score=67.50 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcE
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA---EVPF 394 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~---gvpf 394 (817)
+++|+|+||+||||+++.++.++ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999887 5553
No 329
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0014 Score=66.42 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
+.++|+|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998764
No 330
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.06 E-value=0.0022 Score=68.60 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 399 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~ 399 (817)
|..+..-++|.||||+|||+++..+|..+ |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555568999999999999999887653 667766665
No 331
>PRK03839 putative kinase; Provisional
Probab=97.06 E-value=0.00048 Score=69.27 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999997653
No 332
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.04 E-value=0.0036 Score=68.98 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=92.5
Q ss_pred ccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHH---HHhcCCcEEEeechhhHH-------
Q 003473 335 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV---AGEAEVPFISCSASEFVE------- 404 (817)
Q Consensus 335 V~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAL---A~e~gvpfi~is~s~~~~------- 404 (817)
+.|..+....+.+++..-- -......|++.||.|+|||++.... +++.|-.|+.|....+..
T Consensus 26 l~g~~~~~~~l~~~lkqt~--------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI--------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred eeehHHHHHHHHHHHHHHH--------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHH
Confidence 5677777777777775411 0123456999999999999876655 336677776664432221
Q ss_pred --------------HhhccchHHHHHHHHHHHh-----cCCeEEEEccccchhhccCCccccccchHHHHH-HHHHHhhc
Q 003473 405 --------------LYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LNQLLTEM 464 (817)
Q Consensus 405 --------------~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~-Ln~LL~em 464 (817)
+..|.....+..++...+. ..|.|.++||||-+.+.. +|+ +..++..-
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDis 165 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHHH
Confidence 1123333444444444432 123344457999876421 233 33343332
Q ss_pred cCCCCCCcEEEEEEcCCCCCC---CcccCCCCccceE-EEeeCC-CHHHHHHHHHHHH
Q 003473 465 DGFDSNSAVIVLGATNRSDVL---DPALRRPGRFDRV-VMVETP-DKIGREAILKVHV 517 (817)
Q Consensus 465 dg~~~~~~VIVIaATN~pd~L---DpALlRpGRFdr~-I~V~~P-d~~eR~~ILk~~l 517 (817)
. ....+|.||+-|.+-+.+ .....+ ||... |++.++ ...+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 235678889888776554 466666 88755 665543 4677777887776
No 333
>PRK09354 recA recombinase A; Provisional
Probab=97.04 E-value=0.0022 Score=71.81 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHH-h---hc------------cchHHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAKKE 424 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~-~---vG------------~~~~~vr~lF~~A~~~ 424 (817)
+..+-++++||||||||+||-.++.++ |...++++...-.+. + .| ..+..+..+-...+..
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 334448899999999999999876543 667777765442221 0 01 1112222222334556
Q ss_pred CCeEEEEccccchhh
Q 003473 425 APSIIFIDEIDAVAK 439 (817)
Q Consensus 425 aP~ILfIDEIDaL~~ 439 (817)
.+.+|+||-+-++.+
T Consensus 138 ~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 138 AVDLIVVDSVAALVP 152 (349)
T ss_pred CCCEEEEeChhhhcc
Confidence 789999999998875
No 334
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.03 E-value=0.0029 Score=73.41 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc--------chHHHHHHHHHHHhc
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 424 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 424 (817)
|..+..-+||+|+||+|||+|+..+|... +.++++++..+-.+.. .|. .+..+.++...+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444558999999999999999997754 4577787765433211 111 112345666667777
Q ss_pred CCeEEEEccccchhh
Q 003473 425 APSIIFIDEIDAVAK 439 (817)
Q Consensus 425 aP~ILfIDEIDaL~~ 439 (817)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 335
>PRK00625 shikimate kinase; Provisional
Probab=97.03 E-value=0.00059 Score=69.13 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
.|+|+|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 336
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.02 E-value=0.0017 Score=62.19 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
|.++|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 337
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.02 E-value=0.0035 Score=67.66 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=57.0
Q ss_pred cccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeec-hhhHH-
Q 003473 330 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEFVE- 404 (817)
Q Consensus 330 vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g---vpfi~is~-s~~~~- 404 (817)
.+++++.-.++..+.|++++. ..-..++++||+|+|||++++++..+.. ..++.+.- .++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467777655555555544432 1122489999999999999999987663 23444321 11110
Q ss_pred ----Hhhc-cchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 405 ----LYVG-MGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 405 ----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
..+. .......+++..+....|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0001 1112356777778888999999999953
No 338
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.0049 Score=62.64 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC-------------cEEEeechhhHHHhh------c------cchHHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDLF 418 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gv-------------pfi~is~s~~~~~~v------G------~~~~~vr~lF 418 (817)
.+..-+.|.||+|+|||+|.++++...|- ++..+.-.++.+.+- . .+..+.+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 34445889999999999999999743321 122221111222110 0 0112345556
Q ss_pred HHHHhcC--CeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccc
Q 003473 419 ARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 496 (817)
Q Consensus 419 ~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFd 496 (817)
..|.... |.++++||--+ +.+....+.+.+++.++. . .+..||.+|+.++.+ + ..|
T Consensus 99 aral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~d 156 (176)
T cd03238 99 ASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SAD 156 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hCC
Confidence 6666778 89999999754 233444455555555543 1 233555577665432 2 356
Q ss_pred eEEEeeC
Q 003473 497 RVVMVET 503 (817)
Q Consensus 497 r~I~V~~ 503 (817)
+.+.+..
T Consensus 157 ~i~~l~~ 163 (176)
T cd03238 157 WIIDFGP 163 (176)
T ss_pred EEEEECC
Confidence 6766643
No 339
>PRK13949 shikimate kinase; Provisional
Probab=97.00 E-value=0.0012 Score=66.41 Aligned_cols=31 Identities=45% Similarity=0.662 Sum_probs=29.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
.|+|+||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999998865
No 340
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.99 E-value=0.009 Score=66.90 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=48.1
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
..|.+.+.....|..++-. .....|..+.|||-.|||||.+.+.+-+..+.|.+.++|-+..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF 67 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc
Confidence 4566677777766665421 1235788899999999999999999999999999999886544
No 341
>PRK05973 replicative DNA helicase; Provisional
Probab=96.97 E-value=0.0093 Score=63.54 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
|..+..-+++.|+||+|||+++-.+|.+. |-+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 34444558999999999999998887654 7777666654
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.97 E-value=0.00077 Score=67.67 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=32.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+-++|.||||+|||++|++++.+++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 45899999999999999999999998888776665544
No 343
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.97 E-value=0.00067 Score=68.02 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
|+++||||+|||++|+.+|...+++. ++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 78999999999999999999998654 555555543
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0064 Score=69.06 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH----H---Hh---------hccchHHHHHHHHHHHh-c
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 424 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~----~---~~---------vG~~~~~vr~lF~~A~~-~ 424 (817)
.|+-++|+||+|+|||+++..||..+ |..+..+++..+. + .| +......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46779999999999999999999865 3344444442221 1 11 12344556666666654 2
Q ss_pred CCeEEEEccccc
Q 003473 425 APSIIFIDEIDA 436 (817)
Q Consensus 425 aP~ILfIDEIDa 436 (817)
...+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 356999987644
No 345
>PRK04296 thymidine kinase; Provisional
Probab=96.96 E-value=0.0023 Score=65.48 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=41.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech----hhHH---Hhhccc-----hHHHHHHHHHHH--hcCCeEEE
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 430 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s----~~~~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 430 (817)
-++++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 5555545321 1100 111110 112344454443 34567999
Q ss_pred Eccccch
Q 003473 431 IDEIDAV 437 (817)
Q Consensus 431 IDEIDaL 437 (817)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999654
No 346
>PRK10867 signal recognition particle protein; Provisional
Probab=96.96 E-value=0.011 Score=68.20 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=47.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH----------------hh---c-cchHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 418 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~~----------------~v---G-~~~~~vr~lF 418 (817)
..+|.-++++||+|+|||+++..+|..+ |..+..+++..+... +. + ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3557889999999999999887777643 555666665432210 10 0 1122334555
Q ss_pred HHHHhcCCeEEEEccccch
Q 003473 419 ARAKKEAPSIIFIDEIDAV 437 (817)
Q Consensus 419 ~~A~~~aP~ILfIDEIDaL 437 (817)
+.++.....+|+||=.-.+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 6666666779998866443
No 347
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.94 E-value=0.008 Score=62.20 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 395 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi 395 (817)
|.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 348
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.94 E-value=0.0099 Score=73.85 Aligned_cols=151 Identities=20% Similarity=0.290 Sum_probs=83.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech--h-----hHHH----h----hcc---c------------hHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS--E-----FVEL----Y----VGM---G------------ASRVRD 416 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s--~-----~~~~----~----vG~---~------------~~~vr~ 416 (817)
+-++++||+|.|||+++...+...+ ++.-++.. + |... . .+. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999987766 55444432 1 1110 0 000 0 011223
Q ss_pred HHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC-cccCCCCc
Q 003473 417 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGR 494 (817)
Q Consensus 417 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD-pALlRpGR 494 (817)
++..... ..|.+|+|||+|.+. +....+.+..|+..+. ....+|| ++.....+. ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~-----------~~~~~~~l~~l~~~~~----~~~~lv~-~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT-----------NPEIHEAMRFFLRHQP----ENLTLVV-LSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC-----------ChHHHHHHHHHHHhCC----CCeEEEE-EeCCCCCCchHhHHhc--
Confidence 3333332 578999999999863 2233445566665432 2333444 453321121 111111
Q ss_pred cceEEEee----CCCHHHHHHHHHHHHhcCCCCCcccCCHHHHHhhcCCCC
Q 003473 495 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 541 (817)
Q Consensus 495 Fdr~I~V~----~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 541 (817)
+..+.+. ..+.++-.+++...+. .+++++ +...+...|.|+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~-~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEAA-ESSRLCDDVEGWA 219 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCHH-HHHHHHHHhCChH
Confidence 2234455 5677888888776543 234333 4677888888854
No 349
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.94 E-value=0.004 Score=63.37 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH-----hcCCcE--------------EEeechhhHHHhhccchHHHHHHHHHHH-hcCCeE
Q 003473 369 VLLVGLPGTGKTLLAKAVAG-----EAEVPF--------------ISCSASEFVELYVGMGASRVRDLFARAK-KEAPSI 428 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~-----e~gvpf--------------i~is~s~~~~~~vG~~~~~vr~lF~~A~-~~aP~I 428 (817)
++|+||.|.|||++.|.++- .+|.++ ..+...+......+.....++.+-..+. ...|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 334322 1122222222212222223333222222 237889
Q ss_pred EEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 429 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 429 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
+++||.-+-. ...+....+..++..+.. ..+..+|.+|+..+
T Consensus 82 lllDEp~~g~----------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT----------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999986421 112233344555555432 11335666777654
No 350
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.93 E-value=0.0035 Score=70.87 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CcEEEeech-hhH-----------HHhhccchHHHHHHHHHHHhcCCeEEE
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 430 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~g-----vpfi~is~s-~~~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 430 (817)
.+|++||+|+|||+++++++++.. ...+.+.-. ++. ..-+|.......++++.+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988762 334444211 111 111222223456677778888999999
Q ss_pred Ecccc
Q 003473 431 IDEID 435 (817)
Q Consensus 431 IDEID 435 (817)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 351
>PRK14532 adenylate kinase; Provisional
Probab=96.93 E-value=0.00078 Score=68.11 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
.++|.||||+|||++|+.+|...|++++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 55555554
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.93 E-value=0.0034 Score=66.69 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777776654433
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.002 Score=66.53 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HHh---hc----------cchHHHHHHHHHHH
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARAK 422 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~-------~~~---vG----------~~~~~vr~lF~~A~ 422 (817)
|+-++|+||+|+|||+.+-.+|..+ +..+--+++..+. ..| .+ ......++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999999888765 3333333332111 111 11 11233455666666
Q ss_pred hcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 423 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 423 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
...-.+|+||-..... .+.+.-+-+..++..+. +...++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~~---~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP----------RDEELLEELKKLLEALN---PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHHS---SSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhcC---CccceEEEecccChHHHH
Confidence 6555699998653321 22233344445555542 334456666665555444
No 354
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.93 E-value=0.0076 Score=62.80 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
|.+...-+++.|+||+|||+++..++.+. |-+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44445568999999999999999887543 6677777654
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.91 E-value=0.0033 Score=65.94 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeec
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 399 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~ 399 (817)
|.++..-++|.|+||+|||+++..++..+ +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 55566668999999999999999886643 778777764
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0073 Score=69.11 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH-------Hh---hc---cchHHHHHHHHHHHhcCCe
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---VG---MGASRVRDLFARAKKEAPS 427 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~-------~~---vG---~~~~~vr~lF~~A~~~aP~ 427 (817)
.+.-++|+||+|+|||+++..+|.++ |..+..+++..+.. .| .| .....+.++.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568899999999999999999754 33343344332211 11 11 1122244445555445567
Q ss_pred EEEEccc
Q 003473 428 IIFIDEI 434 (817)
Q Consensus 428 ILfIDEI 434 (817)
+|+||=.
T Consensus 302 ~VLIDTa 308 (432)
T PRK12724 302 LILIDTA 308 (432)
T ss_pred EEEEeCC
Confidence 8888853
No 357
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.90 E-value=0.0039 Score=62.68 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhH------HH---hhc------------------cchHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFV------EL---YVG------------------MGASR 413 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~~~------~~---~vG------------------~~~~~ 413 (817)
..+...+.|.||+|+|||+|++.+++.... --+.+++.+.. .. |+. .+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 344556899999999999999999987521 11222221110 00 000 01123
Q ss_pred HHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003473 414 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 485 (817)
Q Consensus 414 vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 485 (817)
.+-.+..|-...|.++++||-.+ +.+....+.+.+++.++. . . ..+|.+|+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~-----------~LD~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 160 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV-----------GLDPITERQLLSLIFEVL---K-D-KTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc-----------cCCHHHHHHHHHHHHHHc---C-C-CEEEEEecCHHHH
Confidence 34455666667899999999754 233444556666666653 1 2 3455566665443
No 358
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.90 E-value=0.0045 Score=62.51 Aligned_cols=91 Identities=12% Similarity=0.191 Sum_probs=55.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH--------------------HHHHHHHHHHhcCCe
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS--------------------RVRDLFARAKKEAPS 427 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~--------------------~vr~lF~~A~~~aP~ 427 (817)
-+|+.||||+|||++|..++.+.+.+++++......+ .+... .+..+++.. ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~---~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD---DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh---HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 4899999999999999999999888877776543211 11111 223333221 12356
Q ss_pred EEEEccccchhhccCCccccccc-hHHHHHHHHHHhhccC
Q 003473 428 IIFIDEIDAVAKSRDGRFRIVSN-DEREQTLNQLLTEMDG 466 (817)
Q Consensus 428 ILfIDEIDaL~~~r~~~~~~~~~-~e~~~~Ln~LL~emdg 466 (817)
+|+||-+..+....-. ..+ +.....+..++..+..
T Consensus 79 ~VlID~Lt~~~~n~l~----~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLF----EEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhc----ccchHHHHHHHHHHHHHHHc
Confidence 8999998887643211 011 2234456667666653
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0047 Score=60.37 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeech---hhHHHhhccchHHHHHHHHHHHhcCCeEEEEccccch
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 437 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp--fi~is~s---~~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 437 (817)
..+...+.|.||+|+|||+|++++++..... -+.++.. .++.. ... ..+-+-.+..|-...|.++++||-..=
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~-G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSG-GEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCH-HHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 3445568999999999999999999975210 0111110 00000 111 123344456666678899999997542
Q ss_pred hhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 438 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 438 ~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.+......+..++.++. . .+|.+|+.++
T Consensus 101 -----------LD~~~~~~l~~~l~~~~------~-til~~th~~~ 128 (144)
T cd03221 101 -----------LDLESIEALEEALKEYP------G-TVILVSHDRY 128 (144)
T ss_pred -----------CCHHHHHHHHHHHHHcC------C-EEEEEECCHH
Confidence 23333444555555541 1 4555666654
No 360
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.89 E-value=0.0053 Score=71.46 Aligned_cols=153 Identities=24% Similarity=0.285 Sum_probs=81.8
Q ss_pred cccCchHhHHHHHHHHHHhcChhHHhhh--CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee-chhh------HH
Q 003473 334 DVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEF------VE 404 (817)
Q Consensus 334 DV~G~eeaKeeL~eiV~~Lk~p~~~~~l--g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is-~s~~------~~ 404 (817)
.|.|.+.+|+.+.-++.- --++-..- ..+..-+|||+|.|-|-|+-|.|.+.+-+...+-... +|.= +.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 578999999987655432 11111111 1344567999999999999999999886633221110 0000 00
Q ss_pred HhhccchHHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhcc--CC--CCCCcEEEEEEc
Q 003473 405 LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--GF--DSNSAVIVLGAT 479 (817)
Q Consensus 405 ~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emd--g~--~~~~~VIVIaAT 479 (817)
.-...|+.++. .-|.- ....|++|||+|.+..-.. ..-+ .++.|--..+. |+ .-+.++-|+||.
T Consensus 380 tD~eTGERRLE---AGAMVLADRGVVCIDEFDKMsDiDR----vAIH----EVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 380 TDQETGERRLE---AGAMVLADRGVVCIDEFDKMSDIDR----VAIH----EVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred eccccchhhhh---cCceEEccCceEEehhcccccchhH----HHHH----HHHhcceEEeEeccchhhhccceeeeeec
Confidence 00112333321 11110 1235999999999853210 0111 11111111111 11 235678999999
Q ss_pred CCCC-------------CCCcccCCCCccceEEEe
Q 003473 480 NRSD-------------VLDPALRRPGRFDRVVMV 501 (817)
Q Consensus 480 N~pd-------------~LDpALlRpGRFdr~I~V 501 (817)
|... .|+..|++ |||..+.+
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 9742 46778888 99976654
No 361
>PLN02200 adenylate kinase family protein
Probab=96.88 E-value=0.0012 Score=70.08 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
+.+.|.-+++.||||+|||++|+.+|.++|++ .++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34567779999999999999999999999875 4666666653
No 362
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.88 E-value=0.0019 Score=71.99 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEee-chhhHH--------Hh-----hccchHHHHHHHHHHHhcCCeE
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE--------LY-----VGMGASRVRDLFARAKKEAPSI 428 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is-~s~~~~--------~~-----vG~~~~~vr~lF~~A~~~aP~I 428 (817)
..+++|++||+|+|||+++++++.+..- .++.+. ..++.- .. .|...-...++++.+....|++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4567999999999999999999987642 222221 111110 00 1122234678899999999999
Q ss_pred EEEcccc
Q 003473 429 IFIDEID 435 (817)
Q Consensus 429 LfIDEID 435 (817)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 363
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.87 E-value=0.0026 Score=77.36 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCC
Q 003473 412 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR 491 (817)
Q Consensus 412 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlR 491 (817)
.+-|-.+.+|--..|.||++||.-+ ..+.+.++.+.+-|.++.+ +..+|..|+|+..+ +
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti-----~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTI-----R 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHh-----h
Confidence 3445556666668899999999743 3456667777777777662 23455567776443 3
Q ss_pred CCccceEEEeeC
Q 003473 492 PGRFDRVVMVET 503 (817)
Q Consensus 492 pGRFdr~I~V~~ 503 (817)
++|+.+.++.
T Consensus 673 --~adrIiVl~~ 682 (709)
T COG2274 673 --SADRIIVLDQ 682 (709)
T ss_pred --hccEEEEccC
Confidence 5677776654
No 364
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.003 Score=63.19 Aligned_cols=107 Identities=24% Similarity=0.330 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechhh--------HH----------Hhh-------ccchHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF--------VE----------LYV-------GMGASRVR 415 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvp--fi~is~s~~--------~~----------~~v-------G~~~~~vr 415 (817)
..+..-+.|.||+|+|||+|.+.+++..... -+.+++... .. .+. =.+..+-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 3445569999999999999999999975210 011211111 00 000 00112233
Q ss_pred HHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCC
Q 003473 416 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 485 (817)
Q Consensus 416 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~L 485 (817)
-.+..|-...|.++++||--+ +.+......+..++.++. . . ..+|.+|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~-----------gLD~~~~~~l~~~l~~~~---~-~-~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATS-----------ALDPETEALILEALRALA---K-G-KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCc-----------CCCHHHHHHHHHHHHHhc---C-C-CEEEEEecCHHHH
Confidence 345556667899999999653 233344555666666553 1 2 4555677766544
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.87 E-value=0.0092 Score=62.24 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeec
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 399 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~ 399 (817)
|......++++||||+|||+|+..++.+ .+-+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4555666999999999999999987643 2556666654
No 366
>PRK14531 adenylate kinase; Provisional
Probab=96.87 E-value=0.001 Score=67.35 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+.++++||||+|||++++.+|...|+++++ .++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 359999999999999999999999987655 445543
No 367
>PRK13764 ATPase; Provisional
Probab=96.86 E-value=0.0014 Score=77.99 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=42.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEee-chhh-----HHHhhccchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~g---vpfi~is-~s~~-----~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
..++|++||||+||||+++|++.++. ..+..+. ..++ +..|... ..........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998764 2222221 1111 1111100 01122333344567899999999853
No 368
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.0028 Score=66.70 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc--------CCcEEEeec-hhhHHHhhcc-------------chHHHHHHHHHHHh
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSA-SEFVELYVGM-------------GASRVRDLFARAKK 423 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~--------gvpfi~is~-s~~~~~~vG~-------------~~~~vr~lF~~A~~ 423 (817)
..+.|+.||||||||++.|-+|.-+ +..+..++- +++.....|. ..-.-.-+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4468999999999999999998754 233333432 2222222221 11122345667788
Q ss_pred cCCeEEEEccccc
Q 003473 424 EAPSIIFIDEIDA 436 (817)
Q Consensus 424 ~aP~ILfIDEIDa 436 (817)
++|.|+++|||..
T Consensus 217 m~PEViIvDEIGt 229 (308)
T COG3854 217 MSPEVIIVDEIGT 229 (308)
T ss_pred cCCcEEEEecccc
Confidence 9999999999954
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.84 E-value=0.006 Score=61.64 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e 389 (817)
++.--++|.||+||||++|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 33445999999999999999999984
No 370
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.81 E-value=0.0013 Score=72.78 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=46.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhH---H---HhhccchHHHHHHHHHHHhcCCeEEEEcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFV---E---LYVGMGASRVRDLFARAKKEAPSIIFIDE 433 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is-~s~~~---~---~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 433 (817)
.++++++||+|+|||+++++++.+. ...++.+. ..++. . .+.....-...++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4679999999999999999999863 12233221 11111 0 01111123467889999999999999999
Q ss_pred cc
Q 003473 434 ID 435 (817)
Q Consensus 434 ID 435 (817)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 371
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.81 E-value=0.0025 Score=75.41 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e 389 (817)
..++...+|+.||+|||||+|.||+|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456667999999999999999999984
No 372
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.81 E-value=0.0035 Score=64.45 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAG 388 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~ 388 (817)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999983
No 373
>PRK06217 hypothetical protein; Validated
Probab=96.81 E-value=0.0011 Score=67.01 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
.|+|.|+||+|||++|++|+..+++|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 374
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.80 E-value=0.0056 Score=61.14 Aligned_cols=103 Identities=29% Similarity=0.443 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC-----------cEEEee---------chhhHHH-hhc--cchHHHHHHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCS---------ASEFVEL-YVG--MGASRVRDLFA 419 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv-----------pfi~is---------~s~~~~~-~vG--~~~~~vr~lF~ 419 (817)
..+..-+.|.||+|+|||+|++.+++.... .+.++. ..+.... ... .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 344556899999999999999999987521 011111 1111100 011 11233445566
Q ss_pred HHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 420 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 420 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.|-...|.++++||-.+- .+....+.+.+++.++ +..+|.+|++++
T Consensus 104 ral~~~p~~lllDEPt~~-----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATSA-----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCccc-----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 666778999999997542 3344445555666554 124555666653
No 375
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.80 E-value=0.0011 Score=64.35 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 396 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~ 396 (817)
++|+|+||+|||++|+.++...+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998887654
No 376
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.80 E-value=0.0016 Score=72.28 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEee-chhhHHH------hhccchHHHHHHHHHHHhcCCeEEEEcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 433 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is-~s~~~~~------~vG~~~~~vr~lF~~A~~~aP~ILfIDE 433 (817)
.+++|++|++|+|||+++++++.+. +..++.+. ..++.-. +.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22333332 1111100 0011223467888888899999999999
Q ss_pred cc
Q 003473 434 ID 435 (817)
Q Consensus 434 ID 435 (817)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 377
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.80 E-value=0.0011 Score=66.83 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
|+|.||||+|||++|+.||...|++++. ..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHHH
Confidence 7999999999999999999999877654 4555443
No 378
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.79 E-value=0.0017 Score=71.54 Aligned_cols=73 Identities=22% Similarity=0.428 Sum_probs=49.2
Q ss_pred hCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechhhHHHh---------------hccchHHHHHHHHHHHh
Q 003473 361 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVELY---------------VGMGASRVRDLFARAKK 423 (817)
Q Consensus 361 lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~~~~~~---------------vG~~~~~vr~lF~~A~~ 423 (817)
+-.+...+++++||+|+|||++++++++.... ..+.+ .+..+.. .+...-.+.+++..+..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhc
Confidence 34455678999999999999999999987632 22222 1111100 01112346778888888
Q ss_pred cCCeEEEEcccc
Q 003473 424 EAPSIIFIDEID 435 (817)
Q Consensus 424 ~aP~ILfIDEID 435 (817)
..|.+|++||+-
T Consensus 217 ~~pd~ii~gE~r 228 (308)
T TIGR02788 217 MRPDRIILGELR 228 (308)
T ss_pred CCCCeEEEeccC
Confidence 999999999985
No 379
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.79 E-value=0.0084 Score=64.43 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeech
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 400 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~s 400 (817)
|.....-++++||||||||++|..+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3444555999999999999999988664 25566666643
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.78 E-value=0.0014 Score=73.37 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeec-hhhHH-------H-h----hccchHHHHHHHHHHHhcCCe
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------L-Y----VGMGASRVRDLFARAKKEAPS 427 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~-s~~~~-------~-~----vG~~~~~vr~lF~~A~~~aP~ 427 (817)
.+..+++|++||+|+|||++++++++.... .++.+.- .++.- . + .+...-...++++.+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345568999999999999999999987632 2222211 11100 0 0 112223467888889999999
Q ss_pred EEEEcccc
Q 003473 428 IIFIDEID 435 (817)
Q Consensus 428 ILfIDEID 435 (817)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999984
No 381
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0011 Score=65.41 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=28.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
.+||++|-||||||+++..+|...+.+++.|+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 35999999999999999999999999988764
No 382
>PHA02774 E1; Provisional
Probab=96.77 E-value=0.0071 Score=71.32 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEE-ee
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CS 398 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~-is 398 (817)
++++|+||||||||++|.+|++.++-..+. ++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 479999999999999999999998644433 44
No 383
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.77 E-value=0.0046 Score=68.16 Aligned_cols=36 Identities=36% Similarity=0.648 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
..++..|+|+|+||||||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456677999999999999999999999999999543
No 384
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.77 E-value=0.0072 Score=62.12 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVA 387 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA 387 (817)
+-++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 385
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0042 Score=61.07 Aligned_cols=108 Identities=26% Similarity=0.360 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcE--EEeechhhH-------HHhhc-----cchHHHHHHHHHHHhcCCeEE
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASEFV-------ELYVG-----MGASRVRDLFARAKKEAPSII 429 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpf--i~is~s~~~-------~~~vG-----~~~~~vr~lF~~A~~~aP~IL 429 (817)
.+...+.|.||+|+|||+|++++++.....- +.++..... ...++ .+....+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445689999999999999999999764211 222221110 01111 111233344556666678899
Q ss_pred EEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 430 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 430 fIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
++||...= .+......+..++.++.. . +..+|.+|+..+.+.
T Consensus 103 ilDEp~~~-----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 103 LLDEPTSG-----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred EEeCCCcC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 99998642 233334455555555432 1 234555676654433
No 386
>PRK14530 adenylate kinase; Provisional
Probab=96.73 E-value=0.0014 Score=68.06 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
.|+|.||||+|||++|+.||..++++++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 499999999999999999999999876654 44444
No 387
>PRK04328 hypothetical protein; Provisional
Probab=96.73 E-value=0.012 Score=62.80 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeec
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 399 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~ 399 (817)
|.++...+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4455566999999999999999877543 3667777665
No 388
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.0061 Score=61.57 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhh-----HHH---h---------hccchHHHHHHHHHHHhcCCeEEEE
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-----VEL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 431 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~-----~~~---~---------vG~~~~~vr~lF~~A~~~aP~ILfI 431 (817)
+|+.|+||+|||++|..++.+.+.+.+++....- .+. + ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887777777754422 111 1 0112223344332221 4669999
Q ss_pred ccccchhhccCCcccccc--chHHHHHHHHHHhhccC
Q 003473 432 DEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDG 466 (817)
Q Consensus 432 DEIDaL~~~r~~~~~~~~--~~e~~~~Ln~LL~emdg 466 (817)
|-+..+....-.. ... .+...+.+..|+..+..
T Consensus 80 Dclt~~~~n~l~~--~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFA--DLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCC--ccccchhHHHHHHHHHHHHHHc
Confidence 9988876543210 000 02223455667776653
No 389
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.73 E-value=0.0055 Score=74.88 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh---cCCcEEEeechhhHH----Hhhc------------cchHHHHHHHHHHHh
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE----LYVG------------MGASRVRDLFARAKK 423 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e---~gvpfi~is~s~~~~----~~vG------------~~~~~vr~lF~~A~~ 423 (817)
.....-++++||||||||+|+..++.+ .|-++++++..+-.. .-.| ..+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 344455889999999999999765443 366666666543222 0011 111212222222345
Q ss_pred cCCeEEEEccccchhhccC--CccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 424 EAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 424 ~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
..+.+|+||-|.++..... +......-....+.++++|..|..+....++.+|.+-
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6789999999999985211 1100011123344556666666655555667777664
No 390
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.003 Score=66.07 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
..|.-|.+.|+||+|||++|+.|+..+ |.+++.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346679999999999999999999988 7888888877765
No 391
>PRK06547 hypothetical protein; Provisional
Probab=96.72 E-value=0.0017 Score=65.79 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
...+.-|++.|++|+|||++|+.+++.++++++.++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 345667899999999999999999999998887653
No 392
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.71 E-value=0.0087 Score=59.99 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHH--hh---------------ccchHHHHHH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVEL--YV---------------GMGASRVRDL 417 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~--------~~~~--~v---------------G~~~~~vr~l 417 (817)
+..-+.|.||+|+|||+|.+.+++.... --+.+++.+ +... |+ =.+..+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3445899999999999999999986521 001111111 1000 00 0112234455
Q ss_pred HHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 418 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 418 F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
+..|-...|.++++||--+ +.+....+.+.+++..+.. .+..+|.+|+..+.
T Consensus 107 la~al~~~p~~lllDEPt~-----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 107 LARALYGNPRILVLDEPNS-----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHHHHhcCCCEEEEECCcc-----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 6666778899999999753 2344445556666666532 13345556665543
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.71 E-value=0.0053 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 404 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~ 404 (817)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777655543
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.70 E-value=0.012 Score=65.27 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
..|.-++|+||+|+|||+++..+|..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456779999999999999999999865
No 395
>PTZ00202 tuzin; Provisional
Probab=96.70 E-value=0.013 Score=67.15 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=50.8
Q ss_pred ccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechh
Q 003473 329 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 329 ~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~ 401 (817)
+-...+.+|.++...+|.+++..+. ...|+-+.|+||+|||||++++.++..++.+.+.++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3446789999999999988875422 234567899999999999999999999998777766553
No 396
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.70 E-value=0.063 Score=59.37 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHHHHHHh--c-CCeEEEEccccchhhccC---CccccccchHHHHHHHHHHhhccCCCC-CCcEEE--EEEcCC---
Q 003473 414 VRDLFARAKK--E-APSIIFIDEIDAVAKSRD---GRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR--- 481 (817)
Q Consensus 414 vr~lF~~A~~--~-aP~ILfIDEIDaL~~~r~---~~~~~~~~~e~~~~Ln~LL~emdg~~~-~~~VIV--IaATN~--- 481 (817)
+..++++... . .|.++-||++.++..... ... ..-+...-.+...|+..+.+-.. ..+.+| +++|..
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~-~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDF-KPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCC-ccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 3444554443 2 477888999999986521 111 11223333445555554333222 233343 555532
Q ss_pred CC--CCCcccCCCCc------cc-------------eEEEeeCCCHHHHHHHHHHHHhcCCCCC--cccCCHHHHHhhcC
Q 003473 482 SD--VLDPALRRPGR------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTT 538 (817)
Q Consensus 482 pd--~LDpALlRpGR------Fd-------------r~I~V~~Pd~~eR~~ILk~~l~~~~l~l--~~dvdl~~LA~~t~ 538 (817)
+. .++.+|...-- |. ..|.|+..+.+|-..++..+....-+.- .+..-.+.+...+
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s- 299 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS- 299 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-
Confidence 22 45555543211 11 1678899999999999999887643221 1111123333333
Q ss_pred CCCHHHHHH
Q 003473 539 GFTGADLAN 547 (817)
Q Consensus 539 G~SgaDL~~ 547 (817)
|.+++++..
T Consensus 300 ~GNp~el~k 308 (309)
T PF10236_consen 300 NGNPRELEK 308 (309)
T ss_pred CCCHHHhcc
Confidence 447777653
No 397
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.70 E-value=0.0059 Score=67.40 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechhh------HHH--hhccch-------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VEL--YVGMGA------------- 411 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~~------~~~--~vG~~~------------- 411 (817)
|.+...-++|+||||||||.++-.+|-.+ +...++++..+- .+. ..|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34455558899999999999999998653 236677765441 110 001100
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcC
Q 003473 412 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 412 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN 480 (817)
..+..+...... ..+++|+||-|-++.+..-.. .....++.+.+++++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 467799999999886531110 0112234455666666555444445666666543
No 398
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.70 E-value=0.0013 Score=64.86 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 396 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~ 396 (817)
++|+||||+|||++|+.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999877653
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.69 E-value=0.0097 Score=69.61 Aligned_cols=78 Identities=26% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc----------------------c
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------G 410 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~------vG~----------------------~ 410 (817)
|..+..-+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+ .|. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 34444559999999999999999998754 6677777654332211 110 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccccchhh
Q 003473 411 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 439 (817)
Q Consensus 411 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 439 (817)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33455666677777899999999988753
No 400
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.68 E-value=0.0018 Score=68.47 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
.|..++|.||||+|||++|+.+|..+|++++++ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 345599999999999999999999999877665 44443
No 401
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.67 E-value=0.0077 Score=66.08 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh-h-----HHH--hhccchH------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMGAS------------ 412 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~-~-----~~~--~vG~~~~------------ 412 (817)
|.+...-++++||||+|||+++-.+|..+ +-..++++..+ | .+. ..|....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34445557899999999999999998663 23677776544 1 110 0111100
Q ss_pred -------HHHHHHHHHHhc--CCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 413 -------RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 413 -------~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.+.++.+..... .+++|+||-|-++.+..-.. .....++.+.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 122223333333 36799999988875432110 011223445566665655544445566666554
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.0052 Score=66.91 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc----C-CcEEEeechh
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 401 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~----g-vpfi~is~s~ 401 (817)
.++.++|+||+|+|||+++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46679999999999999999998765 3 4555555544
No 403
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.65 E-value=0.0019 Score=64.28 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcCCcEEEee
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 398 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~gvpfi~is 398 (817)
+.++|+|+||+|||++++.+|..+|.||+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998653
No 404
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.64 E-value=0.002 Score=64.94 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeec
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 399 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~ 399 (817)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999987654
No 405
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.64 E-value=0.023 Score=60.64 Aligned_cols=133 Identities=16% Similarity=0.265 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC---cEEEeech--hhHHHh-----hcc--chH-------HHHH----HHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS--EFVELY-----VGM--GAS-------RVRD----LFAR 420 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gv---pfi~is~s--~~~~~~-----vG~--~~~-------~vr~----lF~~ 420 (817)
..|-.+++.|++|||||++++.+.....- .++.++.. .....| +.. ... +... ....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34556999999999999999999876532 22222211 111111 100 000 1111 1111
Q ss_pred HHh---cCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccce
Q 003473 421 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 497 (817)
Q Consensus 421 A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr 497 (817)
... ..+++|++|++-. + ....+.+.+++.. ..+-++-+|..+...-.|++.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~----------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K----------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c----------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999998632 1 1123456666653 234567888888888899999865 5666
Q ss_pred EEEeeCCCHHHHHHHHHHH
Q 003473 498 VVMVETPDKIGREAILKVH 516 (817)
Q Consensus 498 ~I~V~~Pd~~eR~~ILk~~ 516 (817)
.+.+. -+..+..-|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66554 4566665555544
No 406
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.63 E-value=0.0058 Score=63.31 Aligned_cols=125 Identities=27% Similarity=0.424 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHH
Q 003473 342 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 421 (817)
Q Consensus 342 KeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A 421 (817)
+..|..+|....+| |.+....++|+|+.|+|||++.+.|+.+ ++.-+.... ........ .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----H
Confidence 44444555444443 4556667889999999999999999766 222111110 00111111 1
Q ss_pred HhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhh-ccCCCC---------CCcEEEEEEcCCCCCC-CcccC
Q 003473 422 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 490 (817)
Q Consensus 422 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~e-mdg~~~---------~~~VIVIaATN~pd~L-DpALl 490 (817)
... -|+.|||++.+.++. ...+..+++. .+.+.. ....++|||||..+.| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~~------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKKD------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchhh------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 289999999876321 1233334433 222211 2357899999998765 44445
Q ss_pred CCCccceEEEeeC
Q 003473 491 RPGRFDRVVMVET 503 (817)
Q Consensus 491 RpGRFdr~I~V~~ 503 (817)
| ||= .|.+..
T Consensus 160 R--Rf~-~v~v~~ 169 (198)
T PF05272_consen 160 R--RFW-PVEVSK 169 (198)
T ss_pred e--EEE-EEEEcC
Confidence 5 663 444443
No 407
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.62 E-value=0.0037 Score=61.85 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
|.|+|+||||||+|+++|+.. |.+++.-.+..+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999999 98888554545544
No 408
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.62 E-value=0.0042 Score=64.48 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 397 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~i 397 (817)
|+++||||+|||++|+.+|..++++.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777664
No 409
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.62 E-value=0.0096 Score=64.97 Aligned_cols=113 Identities=23% Similarity=0.424 Sum_probs=70.6
Q ss_pred CCe-EEEEcCCCCcHHHHHHHHHHhcCC----cEEEe---------echhhHH-HhhccchHHHHHHHHHHHhcCCeEEE
Q 003473 366 PRG-VLLVGLPGTGKTLLAKAVAGEAEV----PFISC---------SASEFVE-LYVGMGASRVRDLFARAKKEAPSIIF 430 (817)
Q Consensus 366 pkg-VLL~GPPGTGKT~LAkALA~e~gv----pfi~i---------s~s~~~~-~~vG~~~~~vr~lF~~A~~~aP~ILf 430 (817)
|+| ||++||.|+|||+...|+-.+.+. +.+.+ |-..++. .-+|..-..+...++.|-...|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 455 777899999999999998887642 23332 2222222 34566556666777788888999999
Q ss_pred EccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCCcccCCCCccceEEEeeCCCHH
Q 003473 431 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 507 (817)
Q Consensus 431 IDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~V~~Pd~~ 507 (817)
+-|+-.+ ++++.-|..-+ .+-+|++|-...+ |.. -.||.|.+-++..+
T Consensus 204 vGEmRD~-----------------ETi~~ALtAAE-----TGHLV~~TLHT~s----A~~---ti~RiidvFp~~ek 251 (353)
T COG2805 204 VGEMRDL-----------------ETIRLALTAAE-----TGHLVFGTLHTNS----AAK---TIDRIIDVFPAEEK 251 (353)
T ss_pred EeccccH-----------------HHHHHHHHHHh-----cCCEEEEeccccc----HHH---HHHHHHHhCChhhh
Confidence 9998432 35555555443 5668887754322 222 23556666565543
No 410
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0028 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
.|+|.||||+||||+|+.||+.+ ++.+++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHhH
Confidence 48999999999999999999994 455666555543
No 411
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.0044 Score=63.05 Aligned_cols=72 Identities=25% Similarity=0.221 Sum_probs=42.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCc--EEEeechh--hHHHhh-ccchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASE--FVELYV-GMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvp--fi~is~s~--~~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
+..-+.|.||.|+|||+|.+.+++..... -+.+++.. +..... =.+..+.+-.+..|-...|.++++||--.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 34458899999999999999999865210 11111110 000000 11122344455666677899999999753
No 412
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.58 E-value=0.0062 Score=66.08 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
++-++|.||||||||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 45689999999999999999999983 3445555556544
No 413
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.56 E-value=0.008 Score=66.54 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh-h-----HHH--hhccc---------------
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMG--------------- 410 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~-~-----~~~--~vG~~--------------- 410 (817)
.....-+.|+||||+|||.|+..+|-.+ +...++++... | .+. -.|..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 3444458899999999999998877422 34666766543 1 110 00110
Q ss_pred h----HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 411 A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 411 ~----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
. ..+..+-.......+.+|+||-|-++.+..-.. .+.-.++.+.+++++..|..+....++.||.+.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 1 111222222334568899999999886532111 111223444566666665555445566666543
No 414
>PRK13695 putative NTPase; Provisional
Probab=96.56 E-value=0.012 Score=58.85 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~ 390 (817)
++|+|+||+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 415
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.55 E-value=0.0055 Score=68.11 Aligned_cols=70 Identities=29% Similarity=0.299 Sum_probs=47.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhc-cc-----------hHHHHHHHHHHHhcCCeEEEEcc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG-MG-----------ASRVRDLFARAKKEAPSIIFIDE 433 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG-~~-----------~~~vr~lF~~A~~~aP~ILfIDE 433 (817)
.+.++|.|+||||||+|++++++..+.+++.-.+.++.....+ .. ...... ...+...++.|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC
Confidence 3469999999999999999999999999987776666654321 10 111112 2333344567999995
Q ss_pred ccch
Q 003473 434 IDAV 437 (817)
Q Consensus 434 IDaL 437 (817)
+.+
T Consensus 241 -~~~ 243 (325)
T TIGR01526 241 -DFI 243 (325)
T ss_pred -ChH
Confidence 544
No 416
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.55 E-value=0.0087 Score=59.51 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVA 387 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA 387 (817)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 417
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0042 Score=62.84 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
-++++|.||||||++++.|+ ++|.++++++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 38999999999999999999 9998887765 5543
No 418
>PRK14528 adenylate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=65.21 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 397 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~i 397 (817)
.+++.||||+|||++|+.+|...+++++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887654
No 419
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.52 E-value=0.018 Score=72.80 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=99.7
Q ss_pred CCCCCeEEEEcCCCCcHHHH-HHHHHHhcCCcEEEeechhhHHHhhccchHHHHHHHHHHHhcC---------C------
Q 003473 363 ARPPRGVLLVGLPGTGKTLL-AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P------ 426 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~L-AkALA~e~gvpfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~a---------P------ 426 (817)
...-++++++||||+|||+| .-++-.+.-..++.++-+.-. .++..+ ..+++-...- |
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~l-s~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKL-SVLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHH-HHHHhhceeeccCCeEEEccCcchhh
Confidence 34567899999999999996 456677777777776654221 111122 2222221111 1
Q ss_pred eEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCC--------CCcEEEEEEcCCCCCCCcccCCCCccc--
Q 003473 427 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVLDPALRRPGRFD-- 496 (817)
Q Consensus 427 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~--------~~~VIVIaATN~pd~LDpALlRpGRFd-- 496 (817)
-|||.|||. +...+.-. ..+. --.+.+| .+-.||-. -.++++.+|+|.+..... .--+.||-
T Consensus 1565 lVLFcDeIn-Lp~~~~y~----~~~v-I~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~ 1636 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYY----PPTV-IVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRK 1636 (3164)
T ss_pred eEEEeeccC-CccccccC----CCce-EEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcC
Confidence 299999998 55433210 0000 0011122 22234432 257999999998854321 11122333
Q ss_pred -eEEEeeCCCHHHHHHHHHHHHhcCCCCCcccCC--HHHH------------------HhhcCCCCHHHHHHHHHHHHHH
Q 003473 497 -RVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDI------------------ASMTTGFTGADLANLVNEAALL 555 (817)
Q Consensus 497 -r~I~V~~Pd~~eR~~ILk~~l~~~~l~l~~dvd--l~~L------------------A~~t~G~SgaDL~~Lv~eAal~ 555 (817)
-.+++..|.......|...++.+..+ +-++.. ...+ .....||+|+||...++...-+
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~l~~s~l-~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~y 1715 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAVLMGSYL-CFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGY 1715 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhH
Confidence 36788899999998888877654221 111110 0001 1133689999999988766655
Q ss_pred HHH
Q 003473 556 AGR 558 (817)
Q Consensus 556 A~r 558 (817)
|..
T Consensus 1716 aeT 1718 (3164)
T COG5245 1716 AET 1718 (3164)
T ss_pred Hhc
Confidence 543
No 420
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.52 E-value=0.0023 Score=64.09 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 403 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~ 403 (817)
-+++.||||+|||++|+.++.++|.+.+ +.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4889999999999999999999986654 444544
No 421
>PRK14527 adenylate kinase; Provisional
Probab=96.51 E-value=0.0022 Score=65.30 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
+.|.-++++||||+|||++|+.+|.+.+.+.++ ..+++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~r 42 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDILR 42 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHHH
Confidence 456679999999999999999999999876544 444443
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0078 Score=60.30 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh-------hHH----------Hhhc---------cchHHHHH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-------FVE----------LYVG---------MGASRVRD 416 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~-------~~~----------~~vG---------~~~~~vr~ 416 (817)
+...+.|.||+|+|||+|.+.+++.... --+.+++.. +.. .+.+ .+..+.+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 3445899999999999999999986410 001111100 000 0111 11223344
Q ss_pred HHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCC
Q 003473 417 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 483 (817)
Q Consensus 417 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd 483 (817)
.+..|-...|.|+++||-.+- .+......+.+++..+.. . +..+|.+|+.++
T Consensus 105 ~laral~~~p~illlDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSG-----------LDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccC-----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 566666788999999997542 334444555566655531 2 234555666554
No 423
>PRK08233 hypothetical protein; Provisional
Probab=96.48 E-value=0.0061 Score=60.70 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEee
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCS 398 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g-vpfi~is 398 (817)
.-|.+.|+||+||||+|+.|+..++ .+++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477889999999999999999985 4455443
No 424
>PTZ00035 Rad51 protein; Provisional
Probab=96.47 E-value=0.0095 Score=66.61 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=62.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechh------hHHHh--hccc--------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE------FVELY--VGMG-------------- 410 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~g---------vpfi~is~s~------~~~~~--vG~~-------------- 410 (817)
|.....-+.|+||||+|||+|+..++.... -..++++... +.... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 344444588999999999999999975432 3455555432 11110 0100
Q ss_pred --h---HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 411 --A---SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 411 --~---~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
+ ..+..+........+.+|+||-|-++.+..-.. .+...++.+.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0 111122222234567899999999876542110 11223445556776666655544456666644
No 425
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.47 E-value=0.0034 Score=67.78 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHH------hcCCcEEEeechhhHHH-hhccchHHHHHHHHHHHh--------cCCe
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKK--------EAPS 427 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~------e~gvpfi~is~s~~~~~-~vG~~~~~vr~lF~~A~~--------~aP~ 427 (817)
.+.-..+||.||.|.||+.||+-+-. .+.-+|+.++|..+... -+..--..++..|.-|+. ....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34444599999999999999999854 35679999999876421 000001122233332221 2235
Q ss_pred EEEEccccchhhcc
Q 003473 428 IIFIDEIDAVAKSR 441 (817)
Q Consensus 428 ILfIDEIDaL~~~r 441 (817)
.+|+|||..++.+.
T Consensus 285 mlfldeigelgade 298 (531)
T COG4650 285 MLFLDEIGELGADE 298 (531)
T ss_pred eEehHhhhhcCccH
Confidence 99999999887543
No 426
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0082 Score=60.11 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcC---CcEEEeechhhHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 404 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~g---vpfi~is~s~~~~ 404 (817)
..|.-++|+|+||+|||++|+++++.+. ...+.++...+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4566799999999999999999999875 2345556555544
No 427
>PRK02496 adk adenylate kinase; Provisional
Probab=96.46 E-value=0.0024 Score=64.46 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 397 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~i 397 (817)
-+++.||||+|||++|+.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999999776554
No 428
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.45 E-value=0.0072 Score=69.05 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
..+.|.|+|++|||||+|+++||..+|.+++.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 4567999999999999999999999998876655555543
No 429
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0024 Score=63.92 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 396 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~ 396 (817)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5689999999999999999999999976
No 430
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.44 E-value=0.0026 Score=65.86 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
|++.||||+|||++|+.+|...|++.++ .++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7999999999999999999999977665 444443
No 431
>PHA02624 large T antigen; Provisional
Probab=96.44 E-value=0.0079 Score=71.23 Aligned_cols=38 Identities=24% Similarity=0.180 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeech
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 400 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s 400 (817)
.+.-+.++|+||||||||+++++|++.++-..+.++++
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP 465 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP 465 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC
Confidence 34445899999999999999999999995556667654
No 432
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.44 E-value=0.0073 Score=67.64 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHH--hhccch--------------
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVEL--YVGMGA-------------- 411 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~------~~~~--~vG~~~-------------- 411 (817)
.....-..|+||||||||.|+..+|-.. +...++++... +.+. ..|...
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3344447799999999999999887432 24566666533 1111 011110
Q ss_pred -----HHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 003473 412 -----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 478 (817)
Q Consensus 412 -----~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaA 478 (817)
..+..+-.......+++|+||-|-++.+..-.. .+.-.++.+.+++++..|..+....++.||.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 111222222334568899999999886542111 11123445556666666654444455566554
No 433
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.44 E-value=0.0057 Score=52.37 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc-CCcEEEee
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 398 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~-gvpfi~is 398 (817)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 23444443
No 434
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.43 E-value=0.021 Score=66.85 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh----cCCcEEEeech
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 400 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e----~gvpfi~is~s 400 (817)
|....+.+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4555667999999999999999988543 26787777654
No 435
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.42 E-value=0.012 Score=59.53 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999864
No 436
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.016 Score=66.69 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-----CCcEEEeechh
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 401 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~-----gvpfi~is~s~ 401 (817)
++.++|+||+|+|||+++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999998887643 34555555544
No 437
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0045 Score=64.25 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~ 390 (817)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 438
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.40 E-value=0.0042 Score=64.90 Aligned_cols=133 Identities=26% Similarity=0.346 Sum_probs=60.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH-HhhccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 446 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~-~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 446 (817)
-++|+||+|||||.+|-++|+..|.|++..+.-.... .-+|.+.. ... +.+ ..+ =+|+||-.---
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp-~~~---el~-~~~-RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRP-TPS---ELK-GTR-RIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SG---GGT-T-E-EEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCC-CHH---HHc-ccc-eeeeccccccC--------
Confidence 3789999999999999999999999999988655443 23333211 111 111 112 37777643211
Q ss_pred cccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC-CCC--CcccCCCCccce-EEEeeCCCHHHHHHHHHHHHh
Q 003473 447 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVL--DPALRRPGRFDR-VVMVETPDKIGREAILKVHVS 518 (817)
Q Consensus 447 ~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p-d~L--DpALlRpGRFdr-~I~V~~Pd~~eR~~ILk~~l~ 518 (817)
+.-..++....|+..++......++|+=+-+... ..+ |+-... .|.- ...++.||.+.-..-.+...+
T Consensus 69 --G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 69 --GIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp ---S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHH
Confidence 1112234556677777777775666665554210 000 111111 2222 445677877655544444443
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.39 E-value=0.018 Score=57.41 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 400 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s 400 (817)
++++||||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998764 5666666654
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.38 E-value=0.018 Score=58.92 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445569999999999999999999976
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.38 E-value=0.027 Score=64.89 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH-------HH--------hhc----cc-hHHHHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------EL--------YVG----MG-ASRVRDLFAR 420 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~-------~~--------~vG----~~-~~~vr~lF~~ 420 (817)
.+|.-++|+||+|+||||++..+|..+ |..+.-+++..+. .. +.+ .. ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457779999999999999999998765 5555555553322 10 010 01 1223445666
Q ss_pred HHhcCCeEEEEcccc
Q 003473 421 AKKEAPSIIFIDEID 435 (817)
Q Consensus 421 A~~~aP~ILfIDEID 435 (817)
++...-.+||||=.-
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 666556789988654
No 442
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.38 E-value=0.013 Score=66.12 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC------CcEEEeec-hhhHH------------HhhccchHHHHHHHHHHHhcCCe
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCSA-SEFVE------------LYVGMGASRVRDLFARAKKEAPS 427 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g------vpfi~is~-s~~~~------------~~vG~~~~~vr~lF~~A~~~aP~ 427 (817)
..++++||+|+|||+++++++++.. ..++.+.- -++.- .-++.........++.+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 3489999999999999999998752 22332211 01100 00111112345556667778999
Q ss_pred EEEEcccc
Q 003473 428 IIFIDEID 435 (817)
Q Consensus 428 ILfIDEID 435 (817)
++++.|+-
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 443
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.028 Score=57.34 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568999999999999999999864
No 444
>PRK13808 adenylate kinase; Provisional
Probab=96.35 E-value=0.012 Score=65.51 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~ 404 (817)
|+|.||||+|||++++.||..+|++++. ..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHHH
Confidence 8999999999999999999999875554 455553
No 445
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.33 E-value=0.0064 Score=65.38 Aligned_cols=116 Identities=20% Similarity=0.197 Sum_probs=65.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechh-h--------HHHhhccc------------------hH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE-F--------VELYVGMG------------------AS 412 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~g---------vpfi~is~s~-~--------~~~~vG~~------------------~~ 412 (817)
.=|+||||+|||.|+-.+|-.+. ...++++... | .+.|--.. ..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 34999999999999998876543 3366665432 1 11111000 01
Q ss_pred HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCCCC
Q 003473 413 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 486 (817)
Q Consensus 413 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~LD 486 (817)
.+..+-.........+|+||-|-++.+..-.. .....++.+.+..++..|..+....++.|+.|.+-....|
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11122222233456799999999998643211 1123456677888777776665556677765544333333
No 446
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.022 Score=58.14 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e 389 (817)
.+...+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999999974
No 447
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.33 E-value=0.075 Score=57.72 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeec
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 399 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~ 399 (817)
...|+-++|+||+|+|||+++..+|..+ |..+.-+++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3457789999999999999999998765 444444444
No 448
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.32 E-value=0.017 Score=65.78 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcC
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGEAE 391 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e~g 391 (817)
.-++|+||||+|||+|++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999753
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.32 E-value=0.015 Score=61.48 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 003473 369 VLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e 389 (817)
.+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999853
No 450
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.32 E-value=0.01 Score=66.43 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~ 390 (817)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37889999999999999999987
No 451
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.31 E-value=0.0071 Score=60.98 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=41.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------------CCcEEEeechh----hHHHh---------------hc-------
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASE----FVELY---------------VG------- 408 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~-------------gvpfi~is~s~----~~~~~---------------vG------- 408 (817)
-++|+||||+|||+++-.+|..+ +.++++++... +...+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38899999999999999997653 23566665432 11110 00
Q ss_pred ----------cchHHHHHHHHHHHh-cCCeEEEEccccchhhc
Q 003473 409 ----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 440 (817)
Q Consensus 409 ----------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 440 (817)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011234455666666 57899999999998754
No 452
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.30 E-value=0.03 Score=65.85 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHHH--------------hhc--c------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL--------------YVG--M------------ 409 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~~--------------~vG--~------------ 409 (817)
|.+...-+||+|+||+|||+|+..++.+. |-++++++..+-.+. +.. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 34455669999999999999999876432 667777765432221 000 0
Q ss_pred --------chHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCC
Q 003473 410 --------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 410 --------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~ 481 (817)
-...+..+-+.+....|..|+||-+..+...-+ ........+..++..+. ..++.+|.+++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d------~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS------NEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc------CHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 011122333344556788999999987643211 11222445666666554 234555666655
Q ss_pred CC
Q 003473 482 SD 483 (817)
Q Consensus 482 pd 483 (817)
..
T Consensus 177 ~~ 178 (509)
T PRK09302 177 GD 178 (509)
T ss_pred cc
Confidence 43
No 453
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.30 E-value=0.0076 Score=67.27 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=54.3
Q ss_pred cc-cccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcC-CcEEEeechhhHHHhhcc
Q 003473 332 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASEFVELYVGM 409 (817)
Q Consensus 332 f~-DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~g-vpfi~is~s~~~~~~vG~ 409 (817)
|+ ++.|++++.++ +|++++.... -....-+-++|.||+|+|||+|++.|.+-+. .+++.+..+-..+.-...
T Consensus 59 f~~~~~G~~~~i~~---lV~~fk~AA~---g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 59 FEDEFYGMEETIER---LVNYFKSAAQ---GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccccCcHHHHHH---HHHHHHHHHh---ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 55 89999988765 5555554322 1223345588999999999999999987552 366666555444433444
Q ss_pred chHHHHHHHHH
Q 003473 410 GASRVRDLFAR 420 (817)
Q Consensus 410 ~~~~vr~lF~~ 420 (817)
-...+|+.|..
T Consensus 133 ~P~~~r~~~~~ 143 (358)
T PF08298_consen 133 FPKELRREFED 143 (358)
T ss_pred CCHhHHHHHHH
Confidence 45666766654
No 454
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.29 E-value=0.011 Score=66.26 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc---------CCcEEEeechh------hHHH--hhccc---------------
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVEL--YVGMG--------------- 410 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~---------gvpfi~is~s~------~~~~--~vG~~--------------- 410 (817)
.....-++++|+||+|||.|+..+|-.+ +.+.++++... +.+. ..+..
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 3444457899999999999999887432 12567776554 1111 00100
Q ss_pred hHHHHHHH----HHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 411 ASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 411 ~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
...+..++ .......+.+|+||-|-++.+..-.. .+.-.++.+.+.+++..|..+....++.||.+.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 11111122 22344578899999999987532110 112234455677777777665555666666554
No 455
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.29 E-value=0.0098 Score=65.90 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhcC---------CcEEEeechhh------HHHh--hccc--------------
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 410 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~g---------vpfi~is~s~~------~~~~--vG~~-------------- 410 (817)
|..+..-+.++||||+|||+|+..+|..+. ...++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 344455588999999999999999886321 24566665441 1100 0110
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 411 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 411 -~~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
.. .+..+........+++|+||-|-++.+..-.. .+.-..+...+.+++..|..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 11222222234568899999999886432110 011123334456666666555444556666553
No 456
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.28 E-value=0.017 Score=59.48 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
-+.|+|++|+|||++++.++..+|.+++. +.++...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHHHH
Confidence 38899999999999999999988988874 5555443
No 457
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.27 E-value=0.0083 Score=69.49 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=61.1
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhcCCcEE-EeechhhHHH
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 405 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~e~gvpfi-~is~s~~~~~ 405 (817)
...+|+++.......+.+.+++ ..|.| +|++||.|+|||+...++.++++-+.. .++..|=++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~--------------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLL--------------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHH--------------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 3567888888777777666654 24556 667799999999999999998865544 2333333321
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCeEEEEccccc
Q 003473 406 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 406 ------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 436 (817)
-.|.+ ....++....+.|+||.+.||-.
T Consensus 299 ~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 11211 23344555668899999999954
No 458
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.27 E-value=0.0099 Score=61.05 Aligned_cols=43 Identities=28% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc-CCcEEEeechhhHHH
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVEL 405 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~-gvpfi~is~s~~~~~ 405 (817)
...|.-+++.|+||+|||+++..+..++ +-.++.++..+|...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3568889999999999999999999988 777888888877654
No 459
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.26 E-value=0.017 Score=58.43 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
|.|+|+||+|||++++.+++ +|++++.+ .++...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~--D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA--DKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec--CHHHHh
Confidence 68999999999999999998 78877654 455443
No 460
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.26 E-value=0.023 Score=55.53 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCcHHH-HHHHHHHhc
Q 003473 367 RGVLLVGLPGTGKTL-LAKAVAGEA 390 (817)
Q Consensus 367 kgVLL~GPPGTGKT~-LAkALA~e~ 390 (817)
+.+++.||+|||||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555554443
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.25 E-value=0.0032 Score=58.57 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~ 390 (817)
|+|.|+||||||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 462
>PRK01184 hypothetical protein; Provisional
Probab=96.25 E-value=0.0039 Score=62.85 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 397 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~i 397 (817)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 789999888665
No 463
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.24 E-value=0.014 Score=58.89 Aligned_cols=107 Identities=25% Similarity=0.352 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeechh--------hHHH--h-------hcc------------chH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--------FVEL--Y-------VGM------------GAS 412 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~s~--------~~~~--~-------vG~------------~~~ 412 (817)
.+..-+.|.||+|+|||+|++.+++.... --+.+++.+ +... | +|. +..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 34456899999999999999999986521 011222111 0000 0 010 112
Q ss_pred HHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCCCC
Q 003473 413 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 413 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~pd~ 484 (817)
+.+-.+..|-...|.++++||--+ +.+....+.+.+++.++.. ..+..+|.+|+.++.
T Consensus 103 ~qrl~laral~~~p~llllDEP~~-----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTS-----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc-----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 233445555667899999999753 2334445566666666531 112355556766543
No 464
>PLN02674 adenylate kinase
Probab=96.23 E-value=0.0054 Score=65.55 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
+++..++|.||||+|||++|+.||...+++. ++..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 4456799999999999999999999998655 455666543
No 465
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.22 E-value=0.023 Score=59.92 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAG 388 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~ 388 (817)
..-++|.||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999987
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.21 E-value=0.017 Score=68.76 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++..-+.|+||+|+|||||++.+++..
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455569999999999999999999865
No 467
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.025 Score=59.15 Aligned_cols=126 Identities=25% Similarity=0.326 Sum_probs=75.8
Q ss_pred cChhHHhhhCCCCCCe--EEEEcCCCCcHHHHHHHHHHhc---CCcEEEeech----hhHH-----------H-------
Q 003473 353 RSPDKYIRLGARPPRG--VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVE-----------L------- 405 (817)
Q Consensus 353 k~p~~~~~lg~~~pkg--VLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s----~~~~-----------~------- 405 (817)
.+.+.-.++|+-.|-| +++.|+.|||||.|.+.++-=+ +....+++.. +|.. .
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444455677766666 8889999999999999987522 3333333321 1111 0
Q ss_pred h-----------hccchHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEE
Q 003473 406 Y-----------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 474 (817)
Q Consensus 406 ~-----------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VI 474 (817)
+ .....+.+..+.+..+.....||+||-+..+.... .++.+++++..+..+....++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEE
Confidence 0 01122334445555555666799999999886321 1334556666666666667766
Q ss_pred EEEEcCCCCCCCcccCC
Q 003473 475 VLGATNRSDVLDPALRR 491 (817)
Q Consensus 475 VIaATN~pd~LDpALlR 491 (817)
++ |-+|+.++++.+-
T Consensus 162 il--Tvhp~~l~e~~~~ 176 (235)
T COG2874 162 IL--TVHPSALDEDVLT 176 (235)
T ss_pred EE--EeChhhcCHHHHH
Confidence 65 4467888877764
No 468
>PRK04182 cytidylate kinase; Provisional
Probab=96.20 E-value=0.0045 Score=61.46 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCcEEE
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 396 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~gvpfi~ 396 (817)
-|+|.|+||+|||++|+.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 469
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.20 E-value=0.068 Score=66.03 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~e 389 (817)
..++|+||.|+|||++.|.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999876
No 470
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.012 Score=59.24 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
+..-+.|.||+|+|||+|++++++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999864
No 471
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.19 E-value=0.025 Score=61.33 Aligned_cols=171 Identities=17% Similarity=0.216 Sum_probs=94.2
Q ss_pred ccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhhccchH
Q 003473 333 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 412 (817)
Q Consensus 333 ~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~vG~~~~ 412 (817)
=+++-.+++.+.+..+..-|..|. .++||+|.+|+||++++|-.|--++..++.+..+.-.+ ..+...
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 356778888888888887776642 46999999999999999999988999999887543111 112234
Q ss_pred HHHHHHHHHH-hcCCeEEEEccccchhh----------ccCCccccccchHHHHHHHHHHhhccC--CC-----------
Q 003473 413 RVRDLFARAK-KEAPSIIFIDEIDAVAK----------SRDGRFRIVSNDEREQTLNQLLTEMDG--FD----------- 468 (817)
Q Consensus 413 ~vr~lF~~A~-~~aP~ILfIDEIDaL~~----------~r~~~~~~~~~~e~~~~Ln~LL~emdg--~~----------- 468 (817)
.++.++.+|. +..|.+++|+|-+-.-. ..+.-..--..+|.+..+..+-..... ..
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 5666666665 45688888877432210 000000112346666666666554321 11
Q ss_pred ----CCCcEEEEEEcCCCCCC------CcccCCCCccceEEEeeCCCHHHHHHHHHHHHhc
Q 003473 469 ----SNSAVIVLGATNRSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 519 (817)
Q Consensus 469 ----~~~~VIVIaATN~pd~L------DpALlRpGRFdr~I~V~~Pd~~eR~~ILk~~l~~ 519 (817)
.+=.|+++ -+...+.+ -|+|.. +..+..+..-+.+....+-..++.+
T Consensus 156 ~rvr~nLHivl~-~sp~~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 156 ERVRKNLHIVLC-MSPVGPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHCCCEEEEEE-ESTTTTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhheeEEEE-ECCCCchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 11123333 22222222 255553 2346667777778888887777754
No 472
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.19 E-value=0.0098 Score=69.63 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=58.6
Q ss_pred CccccccccCchHhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCCcHHHHHHHHHHhcC---CcEEEeech-hh
Q 003473 328 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EF 402 (817)
Q Consensus 328 ~~vtf~DV~G~eeaKeeL~eiV~~Lk~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkALA~e~g---vpfi~is~s-~~ 402 (817)
...+++++.-.++..+.+++++. .+.| +|++||+|+|||++..++..++. ..++.+.-. ++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578887666666666666442 2445 78999999999999999887764 334443211 11
Q ss_pred HHHh-----hcc-chHHHHHHHHHHHhcCCeEEEEcccc
Q 003473 403 VELY-----VGM-GASRVRDLFARAKKEAPSIIFIDEID 435 (817)
Q Consensus 403 ~~~~-----vG~-~~~~vr~lF~~A~~~aP~ILfIDEID 435 (817)
.-.. +.. ......+....+....|+||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1000 110 01234455666777899999999994
No 473
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.18 E-value=0.031 Score=56.74 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHH
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 405 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~ 405 (817)
|.|+|.+|||||++++.++...+.+++. +.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~--~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVID--ADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe--CCHHHHH
Confidence 6899999999999999999987677754 4555443
No 474
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.16 E-value=0.0036 Score=61.19 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.5
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCcEEEeechhhHHHhh
Q 003473 371 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 407 (817)
Q Consensus 371 L~GPPGTGKT~LAkALA~e~gvpfi~is~s~~~~~~v 407 (817)
|.||||+|||++|+.||.+.|. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999985 5566677766443
No 475
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.14 E-value=0.025 Score=58.82 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAG 388 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~ 388 (817)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.14 E-value=0.01 Score=60.84 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46679999999999999999998865
No 477
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.12 E-value=0.032 Score=63.06 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~ 390 (817)
-++|+||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 478
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.041 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.+...+.|.||+|+|||+|++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999864
No 479
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.11 E-value=0.0052 Score=60.58 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCcEEEe
Q 003473 369 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 397 (817)
Q Consensus 369 VLL~GPPGTGKT~LAkALA~e~gvpfi~i 397 (817)
|.++|++|+|||++|+.+|+.+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997653
No 480
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.019 Score=68.91 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGE 389 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e 389 (817)
..+|...+-|+||+|.|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456677999999999999999999774
No 481
>PRK12338 hypothetical protein; Provisional
Probab=96.08 E-value=0.067 Score=59.38 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCcEE
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 395 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvpfi 395 (817)
.|.-+++.|+||||||++|+++|..+|.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4667999999999999999999999998653
No 482
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.08 E-value=0.0068 Score=67.83 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCC--cEEEeec-hhhH-------HHh------hccchHHHHHHHHHHHhcCCeEE
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 429 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gv--pfi~is~-s~~~-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 429 (817)
.+++++.|++|+|||++.+++.++..- ..+.+.. .++. ... .|.+.-.+.++++.+..+.|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 457999999999999999999987631 1122211 1111 000 12233457788999999999999
Q ss_pred EEcccc
Q 003473 430 FIDEID 435 (817)
Q Consensus 430 fIDEID 435 (817)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 483
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.07 E-value=0.018 Score=68.44 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++..-+.|+||+|+|||||++.+++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445559999999999999999999965
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.04 E-value=0.021 Score=69.51 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
++...+.++||+|+|||||++.+++..
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445559999999999999999999864
No 485
>PF13245 AAA_19: Part of AAA domain
Probab=96.01 E-value=0.0091 Score=52.49 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHH-HHHHHHHHhc------CCcEEEeec
Q 003473 369 VLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 399 (817)
Q Consensus 369 VLL~GPPGTGKT-~LAkALA~e~------gvpfi~is~ 399 (817)
+++.|||||||| ++++.++... +..+..++.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 5666665554 445555544
No 486
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.00 E-value=0.017 Score=70.42 Aligned_cols=28 Identities=46% Similarity=0.616 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++...+.++||+|+|||||++.+++..
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999865
No 487
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.00 E-value=0.023 Score=69.11 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++...+.++||+|+|||||++.+++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455669999999999999999999864
No 488
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.99 E-value=0.024 Score=69.50 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=57.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---C--CcEEEeechhh----HHHhhccchHHHHHHHHHHH----------hcCCeE
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA---E--VPFISCSASEF----VELYVGMGASRVRDLFARAK----------KEAPSI 428 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~---g--vpfi~is~s~~----~~~~vG~~~~~vr~lF~~A~----------~~aP~I 428 (817)
-++|.|+||||||++++++...+ + .+++-+..+.- +....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986543 4 45554433211 11222333344444443211 123469
Q ss_pred EEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEcCCC
Q 003473 429 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 429 LfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaATN~p 482 (817)
|+|||+..+.. ..+..|+..+. ...++++++=.+..
T Consensus 420 lIvDEaSMvd~---------------~~~~~Ll~~~~---~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMDT---------------WLALSLLAALP---DHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCCH---------------HHHHHHHHhCC---CCCEEEEECccccc
Confidence 99999987631 24456665443 45678888765543
No 489
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.97 E-value=0.026 Score=66.39 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++..-+.|+||+|+|||||++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999865
No 490
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.96 E-value=0.027 Score=56.35 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhH
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 403 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~ 403 (817)
.+.-+.|.|+||+|||++|++++..+ +..+..++...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 34568999999999999999999887 4445556665443
No 491
>PF13479 AAA_24: AAA domain
Probab=95.96 E-value=0.0086 Score=62.37 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcCCcE-EEeechh--hHH-----HhhccchHHHHHHHHHHH--hcCCeEEEEcccc
Q 003473 366 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASE--FVE-----LYVGMGASRVRDLFARAK--KEAPSIIFIDEID 435 (817)
Q Consensus 366 pkgVLL~GPPGTGKT~LAkALA~e~gvpf-i~is~s~--~~~-----~~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 435 (817)
+..++||||||+|||++|..+ +-|+ +.+..+. +.. .+.=.....+.+.+..+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 445999999999999999988 3333 2232221 100 000113445566665442 2344599999988
Q ss_pred ch
Q 003473 436 AV 437 (817)
Q Consensus 436 aL 437 (817)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 492
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.96 E-value=0.027 Score=68.68 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
++...+.++||+|+|||+|++.+++..
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445569999999999999999999864
No 493
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.95 E-value=0.055 Score=62.42 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc----CCcEEEeechhhHH-------Hh--------h--c--cch-HHHHHHHH
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY--------V--G--MGA-SRVRDLFA 419 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~----gvpfi~is~s~~~~-------~~--------v--G--~~~-~~vr~lF~ 419 (817)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+.. .+ . + ..+ ....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457889999999999999988887653 55666666543321 01 0 0 111 23355666
Q ss_pred HHHhcCCeEEEEccccc
Q 003473 420 RAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 420 ~A~~~aP~ILfIDEIDa 436 (817)
.++.....+|+||=.-.
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 66666677899886544
No 494
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.94 E-value=0.025 Score=59.25 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 003473 367 RGVLLVGLPGTGKTLLAKAVAG 388 (817)
Q Consensus 367 kgVLL~GPPGTGKT~LAkALA~ 388 (817)
.-++|+||+|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999974
No 495
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.90 E-value=0.02 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 364 RPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 364 ~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.+..-+.|.||+|+|||+|.+.+++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558899999999999999999853
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.90 E-value=0.051 Score=63.88 Aligned_cols=107 Identities=24% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhc---CCcEEEeechhhHHHh------hcc----------------------c
Q 003473 362 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM----------------------G 410 (817)
Q Consensus 362 g~~~pkgVLL~GPPGTGKT~LAkALA~e~---gvpfi~is~s~~~~~~------vG~----------------------~ 410 (817)
|......++++||||+|||+|+..++.+. |-+.++++..+-.+.+ .|. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34455568999999999999999987654 6677776553221100 010 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccccchhhccCCccccccchHHHHHHHHHHhhccCCCCCCcEEEEEEc
Q 003473 411 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 411 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln~LL~emdg~~~~~~VIVIaAT 479 (817)
...+..+.+......|.+|+||-+..+.... ......+.+..|...+. +.++.+|.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1222333344455678899999998886421 12233444555555544 2345555554
No 497
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.89 E-value=0.012 Score=57.39 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhcCCc
Q 003473 365 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 393 (817)
Q Consensus 365 ~pkgVLL~GPPGTGKT~LAkALA~e~gvp 393 (817)
+..-++|.|+.|+|||+++|.+++.++++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34468999999999999999999999864
No 498
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.88 E-value=0.024 Score=67.61 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhc
Q 003473 363 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 363 ~~~pkgVLL~GPPGTGKT~LAkALA~e~ 390 (817)
.++..-+.++||+|+|||||++.+++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4455569999999999999999999864
No 499
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.88 E-value=0.0048 Score=64.33 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 003473 368 GVLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 368 gVLL~GPPGTGKT~LAkALA~e~ 390 (817)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998764
No 500
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.88 E-value=0.018 Score=59.25 Aligned_cols=30 Identities=40% Similarity=0.689 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCCcHHHHHHHHHHhc
Q 003473 361 LGARPPRG--VLLVGLPGTGKTLLAKAVAGEA 390 (817)
Q Consensus 361 lg~~~pkg--VLL~GPPGTGKT~LAkALA~e~ 390 (817)
.....++| ++|+||+|.|||+|.|.+..+.
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34445555 8899999999999999998764
Done!