Query 003473
Match_columns 817
No_of_seqs 534 out of 4099
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:42:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003473.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1520-1524//hhsearch_pdb/003473hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 690.7 40.2 450 324-784 6-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 672.9 37.5 458 312-785 11-469 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 438.2 28.7 257 321-580 136-393 (405)
4 4b4t_H 26S protease regulatory 1.0 1 1 430.8 26.5 258 324-584 200-458 (467)
5 4b4t_I 26S protease regulatory 1.0 1 1 428.3 28.5 256 322-580 171-427 (437)
6 4b4t_M 26S protease regulatory 1.0 1 1 423.1 27.2 253 323-578 171-424 (434)
7 3cf2_A TER ATPase, transitiona 1.0 1 1 422.1 10.0 246 326-577 197-460 (806)
8 4b4t_L 26S protease subunit RP 1.0 1 1 421.6 29.1 254 322-578 170-424 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 414.7 27.7 253 323-578 162-416 (428)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 384.2 22.6 316 242-560 342-702 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=690.73 Aligned_cols=450 Identities=49% Similarity=0.783 Sum_probs=411.4
Q ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHH
Q ss_conf 457-9862223445865769999999998229258855089999728999289991899999999833996899521136
Q 003473 324 SEQ-GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~-~~~vtf~DI~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~l 402 (817)
.+. .+.++|+||+|++++|+++++++.+++++..|..++.++|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 6 ~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~ 85 (476)
T 2ce7_A 6 KPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF 85 (476)
T ss_dssp CCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT
T ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHH
T ss_conf 46778999988818849999999999998407287764378889738998899988899999999981998660789999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 88862011589999999997329959999365510001588654346068999999999610399999948999983899
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~~ 482 (817)
.++|.|.+..+++.+|..|+..+||||||||||.++.+++... .+.+++..+++++|+.+||++..+.+++||++||++
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 9997341088999999999845997899856665421004666-767688999999999997533788888999956875
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98993347999422699940799999999999998228999864478788986367999999999999999999870793
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 562 (817)
Q Consensus 483 d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~~ 562 (817)
+.||++++|||||++.|.+++|+.++|.+|++.++++. ++.+++++..++..++|++|+||.++|++|++.|.+++..
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~ 242 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD 242 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66363312267530686158999899999999999727--8860554999987557983999999999999999974898
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 00398899999998603012333202522468876310210221236430899984322223477755320498246755
Q 003473 563 VVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANED 642 (817)
Q Consensus 563 ~It~~di~~Al~r~i~g~~~~~~~ls~~ek~~ia~hEaGHAvv~~~l~~~l~~~~~v~kisI~pr~g~alG~t~~~~~e~ 642 (817)
.|+++||..|+++++.|.+++...+++.+++.++|||+|||+++ +++++.+++++++|+||+.+++||+++.|.+|
T Consensus 243 ~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~----~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~ 318 (476)
T 2ce7_A 243 KITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVS----TVVPNGEPVHRISIIPRGYKALGYTLHLPEED 318 (476)
T ss_dssp SBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH----HHSTTCCCCCEEECC-----------------
T ss_pred EECHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHH----HCCCCCCCCCEEEEECCCCCCCCEEEECCCCC
T ss_conf 23399999999998557443430321001046379986247876----31477654350466057420041278767311
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCCC-CCC
Q ss_conf 3032399998244450351247887519976787001899999999999998166688885100135789-97899-999
Q 003473 643 RYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG-GIDES-GGG 720 (817)
Q Consensus 643 ~~~~t~~~l~~~I~vlLgGRaAEeiifg~~vstGA~nDL~~AT~lAr~MV~~~GMs~~lg~~~~~~~~~~-~~~~~-~~~ 720 (817)
++++++.+|+++|+++|||||||+++| |++||||+|||++||++|+.||++||||+++||+++...... .+... ...
T Consensus 319 ~~~~~~~~l~~~i~~~l~Gr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~ 397 (476)
T 2ce7_A 319 KYLVSRNELLDKLTALLGGRAAEEVVF-GDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRL 397 (476)
T ss_dssp CCSCBHHHHHHHHHHHTHHHHHHHHHH-SSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------C
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 232679999999999875899996023-7977450789999999999999984888768851314777654456543345
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 7789552789999999999999999999999999669999999999999535599999998717
Q 003473 721 VPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGM 784 (817)
Q Consensus 721 ~~~~~~~~~~~~~id~Ev~~ll~~a~~~A~~iL~~nr~~L~~la~~LlekEtL~geei~~il~~ 784 (817)
.++ +..++..||+||++++++||++|++||.+|++.|++||++|+|+|||+++||.+|++.
T Consensus 398 ~~~---s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 398 RNY---SEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp CCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCC
T ss_conf 665---6778999999999999999999999999969999999999997490589999999645
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=672.92 Aligned_cols=458 Identities=45% Similarity=0.700 Sum_probs=412.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 56678999984345798622234458657699999999982292588550899997289992899918999999998339
Q 003473 312 HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE 391 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~vtf~DI~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eag 391 (817)
.+.++++....+.+. +.++|+||+|++++|.++++++.++.++..|..++.++|+|+||+||||||||+||+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 11 AFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp -------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEECCC-CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 777566764363269-9999998188399999999999983060655414687886389989999889999999988748
Q ss_pred CCEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 96899521136888620115899999999973299599993655100015886543460689999999996103999999
Q 003473 392 VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 471 (817)
Q Consensus 392 vpfi~is~s~l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~ 471 (817)
.+|+.++++++.+.++|.+..+++.+|+.++...|||+||||||.++..++... .+.+++..+++++++.+|+++....
T Consensus 90 ~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 90 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 987998336877764215899999999998715998899742988987424676-7874899999999998741466676
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 48999983899989933479994226999407999999999999982289998644787889863679999999999999
Q 003473 472 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 551 (817)
Q Consensus 472 ~ViVIaATN~~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~Lvne 551 (817)
.++++++||+|+.||++++|||||++.|.|++|+.++|.+||+.|+++ .++.+++++..++..++|++|+||+++|++
T Consensus 169 ~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~ 246 (499)
T 2dhr_A 169 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNE 246 (499)
T ss_dssp CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 189999568845438312556614569852899999999999999826--999768889999986389979999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999870793003988999999986030123332025224688763102102212364308999843222234777553
Q 003473 552 AALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGA 631 (817)
Q Consensus 552 Aal~A~r~~~~~It~~di~~Al~r~i~g~~~~~~~ls~~ek~~ia~hEaGHAvv~~~l~~~l~~~~~v~kisI~pr~g~a 631 (817)
|++.|.++++..|+++||.+|+++++.+.++++..+++.+++.++|||+|||+++ +++++.++|++++|+|| +++
T Consensus 247 Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~----~~l~~~~~v~~~~i~pr-~~~ 321 (499)
T 2dhr_A 247 AALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA----HFLEHADGVHKVTIVPR-GRA 321 (499)
T ss_dssp HHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH----CCSSSCCCCCCEESCCS-SCT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCCEEEEEEEECC-CCC
T ss_conf 9999998289865799999999987236443321124777762189999899998----66578870667874047-776
Q ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 204982467-5530323999982444503512478875199767870018999999999999981666888851001357
Q 003473 632 LGFTYTPAN-EDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLS 710 (817)
Q Consensus 632 lG~t~~~~~-e~~~~~t~~~l~~~I~vlLgGRaAEeiifg~~vstGA~nDL~~AT~lAr~MV~~~GMs~~lg~~~~~~~~ 710 (817)
+||++ |. ++.|++|+.+++++|.++||||+||+++| +++||||+|||++||+||+.||++||||+++|++++....
T Consensus 322 ~g~~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~-g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~ 398 (499)
T 2dhr_A 322 LGFMM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVF-DDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRE 398 (499)
T ss_dssp TCSSH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHS-CSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCC
T ss_pred CCCCC--CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 76003--41465430489999999999964376778630-3567660879999999999999983888878843535777
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 899789999977895527899999999999999999999999996699999999999995355999999987176
Q 003473 711 SGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACLEEKEKVEGEELQEWLGMV 785 (817)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~id~Ev~~ll~~a~~~A~~iL~~nr~~L~~la~~LlekEtL~geei~~il~~~ 785 (817)
+..+.... ..+++ ..++..||+||++++++||++|++||.+|++.|++||++|+|+|||+++||.+|++..
T Consensus 399 ~~~~~~~~-~~~~s---~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~ 469 (499)
T 2dhr_A 399 DTYLGGYD-VRQYS---EETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGL 469 (499)
T ss_dssp CCSSCCCC-CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTC
T ss_pred CCCCCCCC-CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCCC
T ss_conf 64334434-34458---9999999999999999999999999999799999999999974856799999996638
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=438.22 Aligned_cols=257 Identities=38% Similarity=0.630 Sum_probs=240.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8434579862223445865769999999998-229258855089999728999289991899999999833996899521
Q 003473 321 AKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 399 (817)
Q Consensus 321 ~~~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~ 399 (817)
....++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred HCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEH
T ss_conf 13555799998888288899999999999998749999986799988825885899998789999999851888528886
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 13688862011589999999997329959999365510001588654346068999999999610399999948999983
Q 003473 400 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 479 (817)
Q Consensus 400 s~l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaAT 479 (817)
+++.++|+|++++.++.+|..|+..+||||||||||+++.+|.... .+.+.+..+++++||.+|||+....+|+||+||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 8951133546899999999999870994676533411115778889-997689999999999960433888875788126
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89998993347999422699940799999999999998228999864478788986367999999999999999999870
Q 003473 480 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 559 (817)
Q Consensus 480 N~~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~ 559 (817)
|+|+.||||++||||||+.|+|++|+.++|.+||+.|+++. ++.++++++.+|..|.||||+||.++|++|++.|.++
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM--NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--BCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 98144899672877676699769969999999999985599--9996579999998779999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHCCH
Q ss_conf 793003988999999986030
Q 003473 560 NKVVVEKIDFIHAVERSIAGI 580 (817)
Q Consensus 560 ~~~~It~~di~~Al~r~i~g~ 580 (817)
++..|+++||..|+++++...
T Consensus 373 ~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 373 RRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp TCSBCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCC
T ss_conf 998759999999999985726
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.79 Aligned_cols=258 Identities=41% Similarity=0.670 Sum_probs=242.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHH
Q ss_conf 4579862223445865769999999998-229258855089999728999289991899999999833996899521136
Q 003473 324 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 402 (817)
Q Consensus 324 ~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~l 402 (817)
.++.|.++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 88862011589999999997329959999365510001588654346068999999999610399999948999983899
Q 003473 403 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 482 (817)
Q Consensus 403 ~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~~ 482 (817)
.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... .+......++++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 0266778999999999998761784675223211013556767-786278999999999986555788837988287893
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98993347999422699940799999999999998228999864478788986367999999999999999999870793
Q 003473 483 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 562 (817)
Q Consensus 483 d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~~ 562 (817)
+.||||++||||||++|+|++|+.++|.+||+.|+++ +++..+++++.||..|.||||+||.++|++|++.|+++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 1179546366655079983896999999999998548--99987779999997779999999999999999999983887
Q ss_pred CCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 0039889999999860301233
Q 003473 563 VVEKIDFIHAVERSIAGIEKKT 584 (817)
Q Consensus 563 ~It~~di~~Al~r~i~g~~~~~ 584 (817)
.|+++||..|+++++.|.++++
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHCCCCCCH
T ss_conf 6699999999999964745612
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=428.28 Aligned_cols=256 Identities=39% Similarity=0.662 Sum_probs=240.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECH
Q ss_conf 434579862223445865769999999998-2292588550899997289992899918999999998339968995211
Q 003473 322 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 400 (817)
Q Consensus 322 ~~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s 400 (817)
...++.|.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred EEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHH
T ss_conf 54336899860055769999999999999987699999867999777884488999639999999999859987998879
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 36888620115899999999973299599993655100015886543460689999999996103999999489999838
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 401 ~l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN 480 (817)
++.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||.+||++....+|+||+|||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 953144766999999999999865991898761222036677888-7765899999999999724767889979999579
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99989933479994226999407999999999999982289998644787889863679999999999999999998707
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 481 ~~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 560 (817)
+|+.|||||+||||||++|+|++||.++|.+||+.|+++ +++.++++++.+|..|.||||+||.++|++|++.|.+++
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 805559988648860279980896999999999999648--999976799999976799989999999999999999848
Q ss_pred CCCCCHHHHHHHHHHHHCCH
Q ss_conf 93003988999999986030
Q 003473 561 KVVVEKIDFIHAVERSIAGI 580 (817)
Q Consensus 561 ~~~It~~di~~Al~r~i~g~ 580 (817)
+..|+++||..|++++..+.
T Consensus 408 ~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 408 RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp CSCBCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC
T ss_conf 99669999999999870798
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=423.14 Aligned_cols=253 Identities=41% Similarity=0.649 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 34579862223445865769999999998-22925885508999972899928999189999999983399689952113
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 323 ~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~ 401 (817)
..+..|.++|+||+|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 66889799867609579999999999999974999998679998872687794999889999999999599889986446
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 68886201158999999999732995999936551000158865434606899999999961039999994899998389
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 402 l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~ 481 (817)
+.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.... ..+..+..+++++||.+||++....+|+||||||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 43134563899999999999861990896033256652257788-88746999999999997136688899899994899
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99899334799942269994079999999999999822899986447878898636799999999999999999987079
Q 003473 482 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 561 (817)
Q Consensus 482 ~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~ 561 (817)
|+.||||++||||||++|+|++|+.++|.+||+.|+++. ++.++++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM--TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS--CBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 223399671577403899808959999999999985689--998767999999868998999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 30039889999999860
Q 003473 562 VVVEKIDFIHAVERSIA 578 (817)
Q Consensus 562 ~~It~~di~~Al~r~i~ 578 (817)
..|+++||..|++++..
T Consensus 408 ~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQA 424 (434)
T ss_dssp SSBCHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 87699999999999737
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=422.14 Aligned_cols=246 Identities=43% Similarity=0.681 Sum_probs=172.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHH
Q ss_conf 79862223445865769999999998-22925885508999972899928999189999999983399689952113688
Q 003473 326 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 404 (817)
Q Consensus 326 ~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~l~~ 404 (817)
..+.++|+||+|++++|++|++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 86201158999999999732995999936551000158865434606899999999961039999994899998389998
Q 003473 405 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 484 (817)
Q Consensus 405 ~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~~d~ 484 (817)
+|.|+++.+++.+|+.|+.++||||||||||+++++|+.. .++...+++++|+.+||++..+.+|+||++||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf 3316789999999999997299299985100233445778----873999999999999746666698799996698032
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 99334799942269994079999999999999822899986447878898636799999999999999999987079---
Q 003473 485 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK--- 561 (817)
Q Consensus 485 LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~~--- 561 (817)
||++|+|||||++.|++++|+.++|.+||+.|+++ .++..++++..+|..|.||+|+||.++|++|++.|.++..
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 69888578636168866897989999999998568--9988643899999756899899999999999999998414512
Q ss_pred --------------CCCCHHHHHHHHHHHH
Q ss_conf --------------3003988999999986
Q 003473 562 --------------VVVEKIDFIHAVERSI 577 (817)
Q Consensus 562 --------------~~It~~di~~Al~r~i 577 (817)
..++++||..|+....
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ 460 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSS
T ss_pred CCCCCCCCHHHHCCCEEEHHHHHHHHHHCC
T ss_conf 000133204552255651999999997287
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=421.59 Aligned_cols=254 Identities=42% Similarity=0.666 Sum_probs=238.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECH
Q ss_conf 434579862223445865769999999998-2292588550899997289992899918999999998339968995211
Q 003473 322 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 400 (817)
Q Consensus 322 ~~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s 400 (817)
...++.|.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred EEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHH
T ss_conf 13315999896671785999999999999987499999867989787699989999849999999999859998998414
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 36888620115899999999973299599993655100015886543460689999999996103999999489999838
Q 003473 401 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 480 (817)
Q Consensus 401 ~l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN 480 (817)
++.++|+|.++..++.+|..|+..+||||||||||+++.+|.... ...+.+..+++++||.+|||+....+|+||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 620552017899999999999863896464204433333334478-8753689999999999834666779869999339
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99989933479994226999407999999999999982289998644787889863679999999999999999998707
Q 003473 481 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 481 ~~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 560 (817)
+|+.|||||+||||||+.|+|++|+.++|.+||+.|+++. ++..+++++.+|..|.||||+||.++|++|++.|.+++
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~ 406 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9033189782777102001359969999999999986589--99864589999976899999999999999999999869
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 930039889999999860
Q 003473 561 KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 561 ~~~It~~di~~Al~r~i~ 578 (817)
+..|+++||..|++++..
T Consensus 407 ~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 407 RDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp CSSBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 987799999999999875
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=414.70 Aligned_cols=253 Identities=43% Similarity=0.648 Sum_probs=236.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHH
Q ss_conf 34579862223445865769999999998-22925885508999972899928999189999999983399689952113
Q 003473 323 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 401 (817)
Q Consensus 323 ~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~ 401 (817)
..++.|.++|+||+|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 67789999888851699999999999999873999998679998865888898998889999999998679969993304
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 68886201158999999999732995999936551000158865434606899999999961039999994899998389
Q 003473 402 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 481 (817)
Q Consensus 402 l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~ 481 (817)
+.++|+|.++..++++|..|+..+||||||||+|+++..|.... ...+.+..+++++||++|||+....+|+||+|||+
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 43145460599999999999973997463002243303556787-88871899999999998438787799799996198
Q ss_pred CCCCCCCCCCCCCCCEEEEEE-CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 998993347999422699940-7999999999999982289998644787889863679999999999999999998707
Q 003473 482 SDVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 482 ~d~LDpALlRpgRFdr~I~v~-~Pd~~eR~~ILk~~l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 560 (817)
|+.||||++||||||+.|+|+ +|+.++|..||+.|+++. ++.++++++.+|..|.||||+||.++|++|++.|.+++
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS--CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 1556966636875159998199999999999999985579--99963589999977799889999999999999999879
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 930039889999999860
Q 003473 561 KVVVEKIDFIHAVERSIA 578 (817)
Q Consensus 561 ~~~It~~di~~Al~r~i~ 578 (817)
+..|+++||..|+.+++.
T Consensus 399 ~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 399 RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp CSSBCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 987799999999997617
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=384.16 Aligned_cols=316 Identities=36% Similarity=0.670 Sum_probs=261.0
Q ss_pred CEEEEECCCCCCCCHHHH--HHHCCCEECCCCC---------------------------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 059995499998506999--9849937615888---------------------------88771899999999999999
Q 003473 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLA 292 (817)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 292 (817)
.++.+|++|.++++.+.+ +++..+++..|+. .+.||.++++..++-.+.+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99996698032698885786361688668979899999999985689988643899999756899899999999999999
Q ss_pred HHHHHCCCC-CCCCC------------CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHH
Q ss_conf 998520431-12222------------3655--55667899998434579862223445865769999999998-22925
Q 003473 293 GLLHRFPVS-FSQQT------------AGQV--GHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 356 (817)
Q Consensus 293 ~~~~~~~~~-~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~vtf~DI~G~ee~K~~L~eiv~~-L~~p~ 356 (817)
.+....... ..... ...+ .......+..+......|.++|+||+|++++|++|.+.+.+ +++|+
T Consensus 422 A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred HHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 99841451200013320455225565199999999728783112344457887888817889999999999975666899
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 88550899997289992899918999999998339968995211368886201158999999999732995999936551
Q 003473 357 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 436 (817)
Q Consensus 357 ~~~~lg~~~pkgILL~GPPGTGKT~LAkALA~eagvpfi~is~s~l~~~~~G~~~~~ir~lF~~Ar~~aP~IIfIDEIDa 436 (817)
.|.+++.++|+|+|||||||||||++|+|+|++++.+|+.+++++++++|+|++++.++.+|+.|+..+||||||||||+
T Consensus 502 ~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHH
T ss_conf 99714888886079866877896399999999838966874241121033436899999999999972996352042567
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 00015886543460689999999996103999999489999838999899334799942269994079999999999999
Q 003473 437 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 516 (817)
Q Consensus 437 L~~~r~~~~~~~~~~e~~~~LnqLL~eldg~~~~~~ViVIaATN~~d~LDpALlRpgRFdr~I~v~~Pd~~eR~~ILk~~ 516 (817)
+...|+... ...+...++++++||++|||+....+|+||||||+|+.||+|++||||||++|+|++|+.++|.+||+.|
T Consensus 582 l~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp CC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 763158888-8986699999999999974878779989999379804389847177855079997996999999999998
Q ss_pred HHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 82289998644787889863679999999999999999998707
Q 003473 517 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 560 (817)
Q Consensus 517 l~~~~~~l~~dvdl~~LA~~t~G~SgaDL~~LvneAal~A~r~~ 560 (817)
+++ .++..+++++.||+.|.||||+||.++|++|++.|.++.
T Consensus 661 l~~--~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 661 LRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SSC--C--CCC----------------CHHHHHHHHHHHHHHHH
T ss_pred HCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 567--999877899999976899999999999999999999999
Done!